Citrus Sinensis ID: 002435

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920--
Protein Sequence
MQFVFSLIFFNFTISNFTSSMLSPLCHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLCGKPLPKECENDEAPTNEDQVEGSEESLLSGTSDWKIILIGYAGGLIVGVVLGLNFSIGILEWFSKKFGMQPKRRRRIRRARNRM
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEccccccEEEEEcccccccEEEcccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccHHHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEccccccccccccEEEcccccccccccccccccccccEEEccccccEEEEcccccccccccccEEEccccEEEEEccccccccccccEEEccccccccccHHccccccccEEEcccccccccccccccccccccccEEEcccccccccccccccccccccccEEEccccccccccccccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccEEEcccccccccccHHHHHcccccEEEcccccccccccHHHHccccccEEEccccccEEEccccccccccccccEEEcccccccccccHHHHHcHHHHHHccccccccccccccccccccccccEEEEEEEEEEEcccEEEEcccccccEEEEcccccccccccHHHHccccccccccccccccccccccHHccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEHHHHHHHHHHHccccccHHHHcccHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEcccccccccccccccHHccHHccEEEccccccccccccHHHccccccEEEEcccccccccccHHHHcccccEEEEcccccccccccccccccHHHHHcccccEEEEcccccccccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccccEEccccccccccccEEEccccccccccHHHHcccccccEEEcccccccccccHHHHccccccEEEEcccccccccccHHHHcccccccEEEcccccccccccccccccccccEEEccccccccccHHHHccccccEEEEccccccccccHHHHHcccccccEEEcccccccccccccccccccccEEEEEcccccccccccccccccEEEEEccccccccccHHHHccccccEEEEcccccccccccHHHHccccccEEEEccccccccccccHHccccccEEEEcccccccccccHHHHHccccEEEEcccccccccccHHHHcccccEEEEEEcccccccccccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEccccHHHHHcccEEEEEEcccccccccccHHHHHHHHHHEEEccccccccccHHHccccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEcccccccccccccccccccccccccccccccccHEEEEEEHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MQFVFSLIFFNFTisnftssmlsplchSYERSALLQFKESLTIIrktssyyiwdpchpktaswkpeeanidcclwdgvecnentghvikldlsnsclqgfinsssglfklVHLEWLDLAFNyficseippeiiNLSRlsylnlssagffgqiPSEILELSNlvsldlshnsyynlielkepnlgNLVKKLTNLkelalggvtisspiphslanlssltllslsgcelrgripSLLGNLTKLMYLDLSFNNllgelptsignldclkrLDISWnelsgelpasignLASLEQLELSLNrfrgktphsmgnftRLYWLSLAsndfsgelpasfgnlrslegldiseckfssqipssLRNLAQLKFLEfshnnfsgpidldMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSqkfnfvglrscnlnefpnflknQHYLEVLDLScnkihgkvpkwliepsmqnfsylnLSHNFLigfyqhpmffprnydgftlDLSYnylqgplpvpppqtkhylvsnnsltgkipfwicnssnslEILDLSynnlsgllpqcldnfsDHLSILDLqhnkfcgsipqtflSGRSLMMIDLsdnllqgriprslvncsslkfldlgnnqisgtfpswlgTLRELNVLILKSnklhgmirepntgcgfpelriidlsnnrftgklpskyFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIydysltmsnkgqmmsydkvpnFLTGVIlssnrfdgeiptsianlkgLQVLSLANNSLHGHILSClgnltglesldlsnnkfsgqipqqlvDLTFLEFFNvsnnnltgpipqgnqfptfdktsfngnlglcgkplpkecendeaptnedqvegseesllsgtsdwKIILIGYAGGLIVGVVLGLNFSIGILEWFSkkfgmqpkrRRRIRRARNRM
Flexible Loop (DISEMBL)
MQFVFSLIFFNFTISNFTSSMLSPLCHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLCGKPLPKECENDeaptnedqvegsEESLLSGTSDWKIILIGYAGGLIVGVVLGLNFSIGILEwfskkfgmqpkrrrrirrarnrm
Low Complexity Region (SEG)
MQFVfsliffnftisnftssMLSPLCHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIInlsrlsylnlssAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHslanlssltllslsGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLCGKPLPKECENDEAPTNEDQVegseesllsgTSDWKiiligyagglivgvvlglNFSIGILEWFSKKFGMQPKrrrrirrarnrM
Disordered region (IsUnstruct)
**FVFSLIFFNFTISNFTSSMLSPLCHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLC******************************TSDWKIILIGYAGGLIVGVVLGLNFSIGILEWFSKKF*****************
Disordered Region (DISOPRED)
MQFVFSLIFFNFTISNFTSSML***CHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQV*******YMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLCGKPL**************************TSDWKIILIGYAGGLIVGVVLGLNFSIGILEWFSKKFGMQPKRRRRIRR*****
Disordered Region (DISEMBL)
MQFVFSLIFFNFTISNFTSSMLSPLCHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLCGKPLPKECE*******************SGTSDWKIILIGYAGGLIVGVVLGLNFSIGILEWFSKKFGMQPKRRRRIRRARNRM
Disordered Region (DISPRO)
MQFVFSLIFFNFTISNFTSSMLSPLCHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLCGKPLPK*C*********************GTSDWKIILIGYAGGLIVGVVLGLNFSIGILEWFSKKFGMQPKRRRR********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQFVFSLIFFNFTISNFTSSMLSPLCHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLCGKPLPKECENDEAPTNEDQVEGSEESLLSGTSDWKIILIGYAGGLIVGVVLGLNFSIGILEWFSKKFGMQPKRRRRIRRARNRM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	922	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.878	0.956	0.349	1e-122
Q9FL28	1173	LRR receptor-like serine/	no	no	0.761	0.598	0.322	1e-80
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.796	0.587	0.316	9e-74
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.708	0.592	0.339	2e-66
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.801	0.590	0.307	2e-65
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.800	0.619	0.296	4e-65
Q9LP24	1120	Probable leucine-rich rep	no	no	0.764	0.629	0.310	8e-63
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.636	0.561	0.323	2e-62
O82318	960	Probably inactive leucine	no	no	0.611	0.587	0.339	3e-62
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.652	0.553	0.324	1e-60

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  441 bits (1135), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 325/931 (34%), Positives = 467/931 (50%), Gaps = 121/931 (12%)

Query: 2   QFVFS---LIFFNFTISNFTSSMLSP-LCHSYERSALLQFKESLTIIRKTSSYYIWDPCH 57
            +VFS   +IF +  + +  SS  SP  C   +R ALL+F+    I    +S++I +   
Sbjct: 8   HWVFSSRIIIFLSLLVHSLASS--SPHFCRDDQRDALLEFRGEFPI---NASWHIMN--- 59

Query: 58  PKTASWK-PEEANIDCCLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWL 116
                W+ P   + DCCLW+GV CN+ +G VI LD+ N+ L  ++ ++S LFKL +L  L
Sbjct: 60  ----QWRGPWNKSTDCCLWNGVTCNDKSGQVISLDIPNTFLNNYLKTNSSLFKLQYLRHL 115

Query: 117 DLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLI 176
           DL  N  +  EIP  + NLS L+ +NL    F G+IP+ I                    
Sbjct: 116 DLT-NCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPASI-------------------- 154

Query: 177 ELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLG 236
                  GN    L  L+ L L    ++  IP SL NLS L  L L    L G+IP  +G
Sbjct: 155 -------GN----LNQLRHLILANNVLTGEIPSSLGNLSRLVNLELFSNRLVGKIPDSIG 203

Query: 237 NLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSL 296
           +L +L  L L+ NNL+GE+P+S+GNL  L  L ++ N+L GE+PASIGNL  L  +    
Sbjct: 204 DLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFEN 263

Query: 297 NRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLR 356
           N   G  P S  N T+L    L+SN+F+   P       +LE  D+S   FS   P SL 
Sbjct: 264 NSLSGNIPISFANLTKLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSFSGPFPKSLL 323

Query: 357 NLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRL---------SLFTKAIFNT 407
            +  L+ +    N F+GPI+      + K L+ L L  NRL          L      + 
Sbjct: 324 LIPSLESIYLQENQFTGPIEFANTSSSTK-LQDLILGRNRLHGPIPESISRLLNLEELDI 382

Query: 408 SQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSH 467
           S   NF G     +++  N L        LDLS N + G+VP  L        + + LSH
Sbjct: 383 SHN-NFTGAIPPTISKLVNLLH-------LDLSKNNLEGEVPACLWR-----LNTMVLSH 429

Query: 468 NFLIGFY---QHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFW 524
           N    F    Q             LDL+ N  QGP                     IP+ 
Sbjct: 430 NSFSSFENTSQEEALIEE------LDLNSNSFQGP---------------------IPYM 462

Query: 525 ICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMI 584
           IC  S SL  LDLS N  SG +P C+ NFS  +  L+L  N F G++P  F     L+ +
Sbjct: 463 ICKLS-SLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATELVSL 521

Query: 585 DLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIR 644
           D+S N L+G+ P+SL+NC +L+ +++ +N+I   FPSWL +L  L+VL L+SNK +G + 
Sbjct: 522 DVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFYGPLY 581

Query: 645 EPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYA 704
             +   GF  LRIID+S+N F+G LP  YF  W  M  +     +YM           YA
Sbjct: 582 HRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMT------EFWRYA 635

Query: 705 ALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNS 764
               Y + + M NKG  MS++++      +  S N+ +G IP S+  LK L+VL+L+ N+
Sbjct: 636 --DSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNA 693

Query: 765 LHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFP 824
               I   L NLT LE+LD+S NK SGQIPQ L  L+FL + N S+N L GP+P+G QF 
Sbjct: 694 FTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQ 753

Query: 825 TFDKTSFNGNLGLCGKPLPKECENDEA--PTNE--DQVEGSEESLLSGTSDWKIILIGYA 880
               +SF  N GL G  L   C +  A  PT++  + +  +EE++     +W    I Y 
Sbjct: 754 RQKCSSFLDNPGLYG--LEDICRDTGALNPTSQLPEDLSEAEENMF----NWVAAAIAYG 807

Query: 881 GGLIVGVVLGLNFSIGILEWFSKKFGMQPKR 911
            G++ G+V+G  ++    EWF++KFG +  +
Sbjct: 808 PGVLCGLVIGHFYTSHNHEWFTEKFGRKQHK 838

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  301 bits (772), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 259/804 (32%), Positives = 368/804 (45%), Gaps = 102/804 (12%)

Query: 73  CLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEI 132
           C W G+ C ++TGHV+ + L    L+G +  S  +  L +L+ LDL  N F   +IP EI
Sbjct: 61  CNWTGITC-DSTGHVVSVSLLEKQLEGVL--SPAIANLTYLQVLDLTSNSF-TGKIPAEI 116

Query: 133 INLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTN 192
             L+ L+ L L    F G IPS I EL N+  LDL +N                      
Sbjct: 117 GKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNN---------------------- 154

Query: 193 LKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLL 252
                     +S  +P  +   SSL L+      L G+IP  LG+L  L     + N+L 
Sbjct: 155 ---------LLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLT 205

Query: 253 GELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTR 312
           G +P SIG L  L  LD+S N+L+G++P   GNL +L+ L L+ N   G  P  +GN + 
Sbjct: 206 GSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSS 265

Query: 313 LYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFS 372
           L  L L  N  +G++PA  GNL  L+ L I + K +S IPSSL  L QL  L  S N+  
Sbjct: 266 LVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLV 325

Query: 373 GPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQH 432
           GPI  ++  +  + LE L+L SN                NF G       EFP  + N  
Sbjct: 326 GPISEEIGFL--ESLEVLTLHSN----------------NFTG-------EFPQSITNLR 360

Query: 433 YLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFT-LDL 491
            L VL +  N I G++P  L    + N   L+   N L G     +    N  G   LDL
Sbjct: 361 NLTVLTVGFNNISGELPADL--GLLTNLRNLSAHDNLLTGPIPSSI---SNCTGLKLLDL 415

Query: 492 SYNYLQGPLPVPPPQTKHYLVS--NNSLTGKIPFWICNSSN------------------- 530
           S+N + G +P    +     +S   N  TG+IP  I N SN                   
Sbjct: 416 SHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLI 475

Query: 531 ----SLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDL 586
                L IL +SYN+L+G +P+ + N  D L+IL L  N F G IP+   +   L  + +
Sbjct: 476 GKLQKLRILQVSYNSLTGPIPREIGNLKD-LNILYLHSNGFTGRIPREMSNLTLLQGLRM 534

Query: 587 SDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREP 646
             N L+G IP  + +   L  LDL NN+ SG  P+    L  L  L L+ NK +G I  P
Sbjct: 535 YSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSI--P 592

Query: 647 NTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAAL 706
            +      L   D+S+N  TG +P +       MQ+        + G I P  L     +
Sbjct: 593 ASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTI-PKELGKLEMV 651

Query: 707 GIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQV---LSLANN 763
              D S  + +     S     N  T +  S N   G IP  +   +G+ +   L+L+ N
Sbjct: 652 QEIDLSNNLFSGSIPRSLQACKNVFT-LDFSQNNLSGHIPDEV--FQGMDMIISLNLSRN 708

Query: 764 SLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQF 823
           S  G I    GN+T L SLDLS+N  +G+IP+ L +L+ L+   +++NNL G +P+   F
Sbjct: 709 SFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVF 768

Query: 824 PTFDKTSFNGNLGLCGKPLP-KEC 846
              + +   GN  LCG   P K C
Sbjct: 769 KNINASDLMGNTDLCGSKKPLKPC 792

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  279 bits (713), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 268/846 (31%), Positives = 391/846 (46%), Gaps = 112/846 (13%)

Query: 69  NIDCCLWDGVECNENTG--HVIKLDLSNSCLQGFINSSSGLFK-LVHLEWLDLAFNYFIC 125
           NI+ C W GV C +NTG   VI L+L+   L G I+   G F  L+HL   DL+ N  + 
Sbjct: 54  NINYCSWTGVTC-DNTGLFRVIALNLTGLGLTGSISPWFGRFDNLIHL---DLSSNNLV- 108

Query: 126 SEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGN 185
             IP  + NL+ L  L L S    G+IPS++  L N+ SL +  N     I     NL N
Sbjct: 109 GPIPTALSNLTSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDIPETLGNLVN 168

Query: 186 L-----------------VKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELR 228
           L                 + +L  ++ L L    +  PIP  L N S LT+ + +   L 
Sbjct: 169 LQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLN 228

Query: 229 GRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLAS 288
           G IP+ LG L  L  L+L+ N+L GE+P+ +G +  L+ L +  N+L G +P S+ +L +
Sbjct: 229 GTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGN 288

Query: 289 LEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASF-GNLRSLEGLDISECKF 347
           L+ L+LS N   G+ P    N ++L  L LA+N  SG LP S   N  +LE L +S  + 
Sbjct: 289 LQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQL 348

Query: 348 SSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNT 407
           S +IP  L     LK L+ S+N+ +G I   +F      L  L L +N L        + 
Sbjct: 349 SGEIPVELSKCQSLKQLDLSNNSLAGSIPEALF--ELVELTDLYLHNNTLEGTLSPSISN 406

Query: 408 SQKFNFVGLRSCNLN-EFPNFLKNQHYLEVLDLSCNKIHGKVPKWL-------------- 452
                ++ L   NL  + P  +     LEVL L  N+  G++P+ +              
Sbjct: 407 LTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGN 466

Query: 453 -----IEPSMQNFSYLNLSH---NFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVP- 503
                I PS+     LNL H   N L+G    P      +    LDL+ N L G +P   
Sbjct: 467 HFEGEIPPSIGRLKELNLLHLRQNELVGGL--PASLGNCHQLNILDLADNQLSGSIPSSF 524

Query: 504 --PPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLL-PQCL---------- 550
                 +  ++ NNSL G +P  + +  N L  ++LS+N L+G + P C           
Sbjct: 525 GFLKGLEQLMLYNNSLQGNLPDSLISLRN-LTRINLSHNRLNGTIHPLCGSSSYLSFDVT 583

Query: 551 -DNFSDHLSI----------LDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSL 599
            + F D + +          L L  N+  G IP T    R L ++D+S N L G IP  L
Sbjct: 584 NNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQL 643

Query: 600 VNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIID 659
           V C  L  +DL NN +SG  P WLG L +L  L L SN+    +      C   +L ++ 
Sbjct: 644 VLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNC--TKLLVLS 701

Query: 660 LSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKG 719
           L  N   G +P +      A+ V+N  + ++   +  P A+   + L    Y L      
Sbjct: 702 LDGNSLNGSIPQEIGNL-GALNVLNLDKNQFSGSL--PQAMGKLSKL----YELR----- 749

Query: 720 QMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQ-VLSLANNSLHGHILSCLGNLTG 778
                           LS N   GEIP  I  L+ LQ  L L+ N+  G I S +G L+ 
Sbjct: 750 ----------------LSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSK 793

Query: 779 LESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLC 838
           LE+LDLS+N+ +G++P  + D+  L + NVS NNL G + +  QF  +   SF GN GLC
Sbjct: 794 LETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLKK--QFSRWPADSFLGNTGLC 851

Query: 839 GKPLPK 844
           G PL +
Sbjct: 852 GSPLSR 857

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  254 bits (650), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 245/721 (33%), Positives = 339/721 (47%), Gaps = 68/721 (9%)

Query: 181 PNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTK 240
           P++G LV    +LK+L L    +S  IP  + N SSL +L L+  +  G IP  +G L  
Sbjct: 91  PSIGGLV----HLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVS 146

Query: 241 LMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFR 300
           L  L +  N + G LP  IGNL  L +L    N +SG+LP SIGNL  L       N   
Sbjct: 147 LENLIIYNNRISGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMIS 206

Query: 301 GKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQ 360
           G  P  +G    L  L LA N  SGELP   G L+ L  + + E +FS  IP  + N   
Sbjct: 207 GSLPSEIGGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTS 266

Query: 361 LKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLS-LFTKAIFNTSQKFNFVGLRSC 419
           L+ L    N   GPI  +  L + + LE L L  N L+    + I N S         + 
Sbjct: 267 LETLALYKNQLVGPIPKE--LGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENA 324

Query: 420 NLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMF 479
              E P  L N   LE+L L  N++ G +P  L   +++N S L+LS N L G    P+ 
Sbjct: 325 LTGEIPLELGNIEGLELLYLFENQLTGTIPVEL--STLKNLSKLDLSINALTGPI--PLG 380

Query: 480 FPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYL------VSNNSLTGKIPFWICNSSNSLE 533
           F      F L L  N L G +   PP+   Y       +S+N L+G+IP ++C  SN + 
Sbjct: 381 FQYLRGLFMLQLFQNSLSGTI---PPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMI- 436

Query: 534 ILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQG 593
           IL+L  NNLSG +P  +      L  L L  N   G  P       ++  I+L  N  +G
Sbjct: 437 ILNLGTNNLSGNIPTGITT-CKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRG 495

Query: 594 RIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFP 653
            IPR + NCS+L+ L L +N  +G  P  +G L +L  L + SNKL G +      C   
Sbjct: 496 SIPREVGNCSALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKM- 554

Query: 654 ELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSL 713
            L+ +D+  N F+G LPS+    +  ++++  S    + G I P AL + +         
Sbjct: 555 -LQRLDMCCNNFSGTLPSEVGSLYQ-LELLKLSN-NNLSGTI-PVALGNLSR-------- 602

Query: 714 TMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQV-LSLANNSLHGHILSC 772
                            LT + +  N F+G IP  + +L GLQ+ L+L+ N L G I   
Sbjct: 603 -----------------LTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPE 645

Query: 773 LGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFN 832
           L NL  LE L L+NN  SG+IP    +L+ L  +N S N+LTGPIP          +SF 
Sbjct: 646 LSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIP---LLRNISMSSFI 702

Query: 833 GNLGLCGKPLPKECENDE--APTNEDQVEGSEESLLSGTSDWKIILIGYAGGLIVGVVLG 890
           GN GLCG PL  +C   +  AP+      G       G    KII I  A  +I GV L 
Sbjct: 703 GNEGLCGPPL-NQCIQTQPFAPSQSTGKPG-------GMRSSKIIAITAA--VIGGVSLM 752

Query: 891 L 891
           L
Sbjct: 753 L 753

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  251 bits (640), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 254/827 (30%), Positives = 374/827 (45%), Gaps = 88/827 (10%)

Query: 73  CLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFK-LVHLEWLDLAFNYFICSEIPPE 131
           C W GV C      +I L+LS   L G I+ S G F  L+H+   DL+ N  +   IP  
Sbjct: 61  CNWTGVTCGGR--EIIGLNLSGLGLTGSISPSIGRFNNLIHI---DLSSNRLV-GPIPTT 114

Query: 132 IINLSRLSYLNLSSAGFF-GQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKL 190
           + NLS         +    G IPS++  L NL SL L  N     I       GNLV   
Sbjct: 115 LSNLSSSLESLHLFSNLLSGDIPSQLGSLVNLKSLKLGDNELNGTIP---ETFGNLV--- 168

Query: 191 TNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNN 250
            NL+ LAL    ++  IP     L  L  L L   EL G IP+ +GN T L     +FN 
Sbjct: 169 -NLQMLALASCRLTGLIPSRFGRLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNR 227

Query: 251 LLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNF 310
           L G LP  +  L  L+ L++  N  SGE+P+ +G+L S++ L L  N+ +G  P  +   
Sbjct: 228 LNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTEL 287

Query: 311 TRL-----------------YW-------LSLASNDFSGELPASF-GNLRSLEGLDISEC 345
             L                 +W       L LA N  SG LP +   N  SL+ L +SE 
Sbjct: 288 ANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSET 347

Query: 346 KFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMF----------------------LVN 383
           + S +IP+ + N   LK L+ S+N  +G I   +F                      + N
Sbjct: 348 QLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISN 407

Query: 384 FKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLN-EFPNFLKNQHYLEVLDLSCN 442
             +L+  +L  N L            K   + L     + E P  + N   L+ +D   N
Sbjct: 408 LTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGN 467

Query: 443 KIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPV 502
           ++ G++P  +    +++ + L+L  N L+G    P      +    +DL+ N L G +P 
Sbjct: 468 RLSGEIPSSI--GRLKDLTRLHLRENELVG--NIPASLGNCHQMTVIDLADNQLSGSIPS 523

Query: 503 P---PPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLL-PQCLDNFSDHLS 558
                   + +++ NNSL G +P  + N  N L  ++ S N  +G + P C    S +LS
Sbjct: 524 SFGFLTALELFMIYNNSLQGNLPDSLINLKN-LTRINFSSNKFNGSISPLC--GSSSYLS 580

Query: 559 ILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGT 618
             D+  N F G IP       +L  + L  N   GRIPR+    S L  LD+  N +SG 
Sbjct: 581 -FDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGI 639

Query: 619 FPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWN 678
            P  LG  ++L  + L +N L G+I  P      P L  + LS+N+F G LP++ F   N
Sbjct: 640 IPVELGLCKKLTHIDLNNNYLSGVI--PTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTN 697

Query: 679 AMQVVNTSELRYMEGMIYPFA--LVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVIL 736
            + +    +   + G I      L +  AL + +  L+    G + S     + L  + L
Sbjct: 698 ILTLF--LDGNSLNGSIPQEIGNLQALNALNLEENQLS----GPLPSTIGKLSKLFELRL 751

Query: 737 SSNRFDGEIPTSIANLKGLQ-VLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQ 795
           S N   GEIP  I  L+ LQ  L L+ N+  G I S +  L  LESLDLS+N+  G++P 
Sbjct: 752 SRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPG 811

Query: 796 QLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLCGKPL 842
           Q+ D+  L + N+S NNL G + +  QF  +   +F GN GLCG PL
Sbjct: 812 QIGDMKSLGYLNLSYNNLEGKLKK--QFSRWQADAFVGNAGLCGSPL 856

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  250 bits (638), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 255/859 (29%), Positives = 386/859 (44%), Gaps = 121/859 (14%)

Query: 83  NTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLN 142
           N  H+  LDLS + L G +     L +L  L +LDL+ N+F  S  P   I+L  LS L+
Sbjct: 111 NLKHLQTLDLSGNSLTGLLPRL--LSELPQLLYLDLSDNHFSGSLPPSFFISLPALSSLD 168

Query: 143 LSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNL--------------GNLVK 188
           +S+    G+IP EI +LSNL +L +  NS+   I  +  N+              G L K
Sbjct: 169 VSNNSLSGEIPPEIGKLSNLSNLYMGLNSFSGQIPSEIGNISLLKNFAAPSCFFNGPLPK 228

Query: 189 KLTNLKELA---LGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLD 245
           +++ LK LA   L    +   IP S   L +L++L+L   EL G IP  LGN   L  L 
Sbjct: 229 EISKLKHLAKLDLSYNPLKCSIPKSFGELHNLSILNLVSAELIGLIPPELGNCKSLKSLM 288

Query: 246 LSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPH 305
           LSFN+L G LP  +  +  L       N+LSG LP+ +G    L+ L L+ NRF G+ PH
Sbjct: 289 LSFNSLSGPLPLELSEIPLLT-FSAERNQLSGSLPSWMGKWKVLDSLLLANNRFSGEIPH 347

Query: 306 SMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLE 365
            + +   L  LSLASN  SG +P       SLE +D+S    S  I       + L  L 
Sbjct: 348 EIEDCPMLKHLSLASNLLSGSIPRELCGSGSLEAIDLSGNLLSGTIEEVFDGCSSLGELL 407

Query: 366 FSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLS-LFTKAIFNTSQKFNFVGLRSCNLNEF 424
            ++N  +G I  D++ +    L  L L SN  +    K+++ ++    F    +      
Sbjct: 408 LTNNQINGSIPEDLWKL---PLMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGYL 464

Query: 425 PNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNY 484
           P  + N   L+ L LS N++ G++P+ +    + + S LNL+ N   G  + P+      
Sbjct: 465 PAEIGNAASLKRLVLSDNQLTGEIPREI--GKLTSLSVLNLNANMFQG--KIPVELGDCT 520

Query: 485 DGFTLDLSYNYLQGPLP---VPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNN 541
              TLDL  N LQG +P       Q +  ++S N+L+G IP       + +E+ DLS   
Sbjct: 521 SLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLS--- 577

Query: 542 LSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVN 601
                      F  H  I DL +N+  G IP+       L+ I LS+N L G IP SL  
Sbjct: 578 -----------FLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSR 626

Query: 602 CSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLS 661
            ++L  LDL  N ++G+ P  +G   +L  L L +N+L+G I E     G   L  ++L+
Sbjct: 627 LTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLG--SLVKLNLT 684

Query: 662 NNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSN-KGQ 720
            N+  G +P+          + N  EL +M+                    L+ +N  G+
Sbjct: 685 KNKLDGPVPA---------SLGNLKELTHMD--------------------LSFNNLSGE 715

Query: 721 MMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLE 780
           + S       L G+ +  N+F GEIP+ + NL                        T LE
Sbjct: 716 LSSELSTMEKLVGLYIEQNKFTGEIPSELGNL------------------------TQLE 751

Query: 781 SLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLCGK 840
            LD+S N  SG+IP ++  L  LEF N++ NNL G +P         K   +GN  LCG+
Sbjct: 752 YLDVSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVPSDGVCQDPSKALLSGNKELCGR 811

Query: 841 PLPKECENDEAPTNEDQVEGSEESLLSGTSDWKIILIGYAGGLIVGVVLGLNFSIGILEW 900
            +  +C          ++EG++       S W     G AG ++   ++   F   +  W
Sbjct: 812 VVGSDC----------KIEGTKLR-----SAW-----GIAGLMLGFTIIVFVFVFSLRRW 851

Query: 901 FSKKFGMQPKRRRRIRRAR 919
              K   Q     R+  +R
Sbjct: 852 AMTKRVKQRDDPERMEESR 870

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  242 bits (618), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 263/847 (31%), Positives = 372/847 (43%), Gaps = 142/847 (16%)

Query: 30  ERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCLWDGVECNENTGHVIK 89
           E +ALL++K + T   K SS+      H    +      +  C  W GV CN   G + +
Sbjct: 33  EANALLKWKSTFTNSSKLSSW-----VHDANTN-----TSFSCTSWYGVSCNSR-GSIEE 81

Query: 90  LDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFF 149
           L+L+N+ ++G               + D  F            I+LS L+Y++LS     
Sbjct: 82  LNLTNTGIEG--------------TFQDFPF------------ISLSNLAYVDLSMNLLS 115

Query: 150 GQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPH 209
           G IP                           P  GNL K    L    L    ++  I  
Sbjct: 116 GTIP---------------------------PQFGNLSK----LIYFDLSTNHLTGEISP 144

Query: 210 SLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLD 269
           SL NL +LT+L L    L   IPS LGN+  +  L LS N L G +P+S+GNL  L  L 
Sbjct: 145 SLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLY 204

Query: 270 ISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPA 329
           +  N L+G +P  +GN+ S+  L LS N+  G  P ++GN   L  L L  N  +G +P 
Sbjct: 205 LYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPP 264

Query: 330 SFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEH 389
             GN+ S+  L +S+ K +  IPSSL NL  L  L    N  +G I     L N + +  
Sbjct: 265 EIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPK--LGNIESMID 322

Query: 390 LSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVP 449
           L LS+N+L+                          P+ L N   L +L L  N + G +P
Sbjct: 323 LELSNNKLT-----------------------GSIPSSLGNLKNLTILYLYENYLTGVIP 359

Query: 450 KWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKH 509
             L   +M++   L L++N L G    P  F    +   L L  NYL G +P      + 
Sbjct: 360 PEL--GNMESMIDLQLNNNKLTG--SIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMES 415

Query: 510 YL---VSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNK 566
            +   +S N LTG +P    N +  LE L L  N+LSG +P  + N S HL+ L L  N 
Sbjct: 416 MINLDLSQNKLTGSVPDSFGNFT-KLESLYLRVNHLSGAIPPGVAN-SSHLTTLILDTNN 473

Query: 567 FCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTL 626
           F G  P+T   GR L  I L  N L+G IP+SL +C SL       N+ +G      G  
Sbjct: 474 FTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDCKSLIRARFLGNKFTGDIFEAFGIY 533

Query: 627 RELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVV--- 683
            +LN +    NK HG I   +     P+L  + +SNN  TG +P+   + WN  Q+V   
Sbjct: 534 PDLNFIDFSHNKFHGEIS--SNWEKSPKLGALIMSNNNITGAIPT---EIWNMTQLVELD 588

Query: 684 ------------------NTSELR----YMEGMIYPFALVSYAALGIYDYSLTMSNKGQM 721
                             N S LR     + G + P  L     L   D S    +    
Sbjct: 589 LSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRV-PAGLSFLTNLESLDLSSNNFSSEIP 647

Query: 722 MSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLES 781
            ++D     L  + LS N+FDG IP  ++ L  L  L L++N L G I S L +L  L+ 
Sbjct: 648 QTFDSFLK-LHDMNLSRNKFDGSIP-RLSKLTQLTQLDLSHNQLDGEIPSQLSSLQSLDK 705

Query: 782 LDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNG---NLGLC 838
           LDLS+N  SG IP     +  L   ++SNN L GP+P     PTF K + +    N+GLC
Sbjct: 706 LDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGPLPDT---PTFRKATADALEENIGLC 762

Query: 839 GKPLPKE 845
              +PK+
Sbjct: 763 SN-IPKQ 768

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  241 bits (615), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 210/650 (32%), Positives = 311/650 (47%), Gaps = 63/650 (9%)

Query: 30  ERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCLWDGVECNENTGHVIK 89
           E +ALL++K + T   +TSS  +    +P T+S+        C  W GV C  + G +I+
Sbjct: 50  EANALLKWKSTFT--NQTSSSKLSSWVNPNTSSF--------CTSWYGVAC--SLGSIIR 97

Query: 90  LDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFF 149
           L+L+N+ ++G          L +L ++DL+ N F    I P     S+L Y +LS     
Sbjct: 98  LNLTNTGIEGTFEDFP-FSSLPNLTFVDLSMNRF-SGTISPLWGRFSKLEYFDLSINQLV 155

Query: 150 GQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPH 209
           G+IP E+ +LSNL +L L  N     I  +       + +LT + E+A+    ++ PIP 
Sbjct: 156 GEIPPELGDLSNLDTLHLVENKLNGSIPSE-------IGRLTKVTEIAIYDNLLTGPIPS 208

Query: 210 SLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLD 269
           S  NL+ L  L L    L G IPS +GNL  L  L L  NNL G++P+S GNL  +  L+
Sbjct: 209 SFGNLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLN 268

Query: 270 ISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPA 329
           +  N+LSGE+P  IGN+ +L+ L L  N+  G  P ++GN   L  L L  N  +G +P 
Sbjct: 269 MFENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPP 328

Query: 330 SFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEH 389
             G + S+  L+ISE K +  +P S   L  L++L    N  SGPI     + N   L  
Sbjct: 329 ELGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPG--IANSTELTV 386

Query: 390 LSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVP 449
           L L +N                NF G         P+ +     LE L L  N   G VP
Sbjct: 387 LQLDTN----------------NFTGF-------LPDTICRGGKLENLTLDDNHFEGPVP 423

Query: 450 KWLIEPS---MQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQ 506
           K L +        F   + S +    F  +P     N+    +DLS N   G L     Q
Sbjct: 424 KSLRDCKSLIRVRFKGNSFSGDISEAFGVYPTL---NF----IDLSNNNFHGQLSANWEQ 476

Query: 507 TKH---YLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQ 563
           ++    +++SNNS+TG IP  I N +  L  LDLS N ++G LP+ + N  + +S L L 
Sbjct: 477 SQKLVAFILSNNSITGAIPPEIWNMTQ-LSQLDLSSNRITGELPESISNI-NRISKLQLN 534

Query: 564 HNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWL 623
            N+  G IP       +L  +DLS N     IP +L N   L +++L  N +  T P  L
Sbjct: 535 GNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGL 594

Query: 624 GTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKY 673
             L +L +L L  N+L G I   +       L  +DLS+N  +G++P  +
Sbjct: 595 TKLSQLQMLDLSYNQLDGEIS--SQFRSLQNLERLDLSHNNLSGQIPPSF 642

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score =  241 bits (614), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 213/628 (33%), Positives = 303/628 (48%), Gaps = 64/628 (10%)

Query: 27  HSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCLWDGVECNENTGH 86
           H+ E   LL FK S           I DP     +SW     N D CLW GV CN N   
Sbjct: 28  HANELELLLSFKSS-----------IQDPLK-HLSSWSYSSTN-DVCLWSGVVCN-NISR 73

Query: 87  VIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSR--LSYLNLS 144
           V+ LDLS   + G I  ++  F+L  L+ ++L+ N  +   IP +I   S   L YLNLS
Sbjct: 74  VVSLDLSGKNMSGQI-LTAATFRLPFLQTINLSNNN-LSGPIPHDIFTTSSPSLRYLNLS 131

Query: 145 SAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTIS 204
           +  F G IP   L   NL +LDLS+N +   I        N +   +NL+ L LGG  ++
Sbjct: 132 NNNFSGSIPRGFLP--NLYTLDLSNNMFTGEIY-------NDIGVFSNLRVLDLGGNVLT 182

Query: 205 SPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDC 264
             +P  L NLS L  L+L+  +L G +P  LG +  L ++ L +NNL GE+P  IG L  
Sbjct: 183 GHVPGYLGNLSRLEFLTLASNQLTGGVPVELGKMKNLKWIYLGYNNLSGEIPYQIGGLSS 242

Query: 265 LKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFS 324
           L  LD+ +N LSG +P S+G+L  LE + L  N+  G+ P S+ +   L  L  + N  S
Sbjct: 243 LNHLDLVYNNLSGPIPPSLGDLKKLEYMFLYQNKLSGQIPPSIFSLQNLISLDFSDNSLS 302

Query: 325 GELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNF 384
           GE+P     ++SLE L +     + +IP  + +L +LK L+   N FSG I  +  L   
Sbjct: 303 GEIPELVAQMQSLEILHLFSNNLTGKIPEGVTSLPRLKVLQLWSNRFSGGIPAN--LGKH 360

Query: 385 KHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLN-EFPNFLKNQHYLEVLDLSCNK 443
            +L  L LS+N L+         S     + L S +L+ + P  L     LE + L  N 
Sbjct: 361 NNLTVLDLSTNNLTGKLPDTLCDSGHLTKLILFSNSLDSQIPPSLGMCQSLERVRLQNNG 420

Query: 444 IHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPV- 502
             GK+P+   +  + NF                            LDLS N LQG +   
Sbjct: 421 FSGKLPRGFTKLQLVNF----------------------------LDLSNNNLQGNINTW 452

Query: 503 PPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDL 562
             PQ +   +S N   G++P +  + S  L+ LDLS N +SG++PQ L  F + +  LDL
Sbjct: 453 DMPQLEMLDLSVNKFFGELPDF--SRSKRLKKLDLSRNKISGVVPQGLMTFPEIMD-LDL 509

Query: 563 QHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSW 622
             N+  G IP+   S ++L+ +DLS N   G IP S      L  LDL  NQ+SG  P  
Sbjct: 510 SENEITGVIPRELSSCKNLVNLDLSHNNFTGEIPSSFAEFQVLSDLDLSCNQLSGEIPKN 569

Query: 623 LGTLRELNVLILKSNKLHGMIREPNTGC 650
           LG +  L  + +  N LHG +  P TG 
Sbjct: 570 LGNIESLVQVNISHNLLHGSL--PFTGA 595

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  235 bits (600), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 235/725 (32%), Positives = 338/725 (46%), Gaps = 123/725 (16%)

Query: 141 LNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGG 200
           LNLS++G  GQ+ SEI EL +LV+LDLS NS+  L+      LGN     T+L+ L L  
Sbjct: 81  LNLSASGLSGQLGSEIGELKSLVTLDLSLNSFSGLLP---STLGNC----TSLEYLDLSN 133

Query: 201 VTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIG 260
              S  +P    +L +LT L L    L G IP+ +G L +L+ L +S+NNL G +P  +G
Sbjct: 134 NDFSGEVPDIFGSLQNLTFLYLDRNNLSGLIPASVGGLIELVDLRMSYNNLSGTIPELLG 193

Query: 261 NLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLAS 320
           N   L+ L ++ N+L+G LPAS+  L +L +L +S N   G+      N  +L  L L+ 
Sbjct: 194 NCSKLEYLALNNNKLNGSLPASLYLLENLGELFVSNNSLGGRLHFGSSNCKKLVSLDLSF 253

Query: 321 NDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMF 380
           NDF G +P   GN  SL  L + +C  +  IPSS+  L ++  ++ S N  SG I  +  
Sbjct: 254 NDFQGGVPPEIGNCSSLHSLVMVKCNLTGTIPSSMGMLRKVSVIDLSDNRLSGNIPQE-- 311

Query: 381 LVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLS 440
           L N   LE L L+ N+L                         E P  L     L+ L+L 
Sbjct: 312 LGNCSSLETLKLNDNQLQ-----------------------GEIPPALSKLKKLQSLELF 348

Query: 441 CNKIHGKVP--KWLIEPSMQNFSYLN------------LSH-----NFLIGFYQH-PMFF 480
            NK+ G++P   W I+   Q   Y N            L H      F  GFY   PM  
Sbjct: 349 FNKLSGEIPIGIWKIQSLTQMLVYNNTLTGELPVEVTQLKHLKKLTLFNNGFYGDIPMSL 408

Query: 481 PRNYDGFTLDLSYNYLQGPLPVPPPQTKH------YLVSNNSLTGKIPFWICNSSNSLEI 534
             N     +DL  N   G +   PP   H      +++ +N L GKIP  I     +LE 
Sbjct: 409 GLNRSLEEVDLLGNRFTGEI---PPHLCHGQKLRLFILGSNQLHGKIPASI-RQCKTLER 464

Query: 535 LDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGR 594
           + L  N LSG+LP+  ++ S  LS ++L  N F GSIP++  S ++L+ IDLS N L G 
Sbjct: 465 VRLEDNKLSGVLPEFPESLS--LSYVNLGSNSFEGSIPRSLGSCKNLLTIDLSQNKLTGL 522

Query: 595 IPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPE 654
           IP  L N  SL  L+L +N + G  PS L                        +GC    
Sbjct: 523 IPPELGNLQSLGLLNLSHNYLEGPLPSQL------------------------SGCA--R 556

Query: 655 LRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLT 714
           L   D+ +N   G +PS  F+ W ++  +  S+  ++ G I  F                
Sbjct: 557 LLYFDVGSNSLNGSIPSS-FRSWKSLSTLVLSDNNFL-GAIPQF---------------- 598

Query: 715 MSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQV-LSLANNSLHGHILSCL 773
                 +   D+    L+ + ++ N F G+IP+S+  LK L+  L L+ N   G I + L
Sbjct: 599 ------LAELDR----LSDLRIARNAFGGKIPSSVGLLKSLRYGLDLSANVFTGEIPTTL 648

Query: 774 GNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNG 833
           G L  LE L++SNNK +G +   L  L  L   +VS N  TGPIP        + + F+G
Sbjct: 649 GALINLERLNISNNKLTGPL-SVLQSLKSLNQVDVSYNQFTGPIPVN---LLSNSSKFSG 704

Query: 834 NLGLC 838
           N  LC
Sbjct: 705 NPDLC 709

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	922
359485824	973	PREDICTED: receptor-like protein 12-like	0.977	0.926	0.487	0.0
359490156	886	PREDICTED: receptor-like protein 12-like	0.945	0.984	0.484	0.0
359485822	993	PREDICTED: receptor-like protein 12-like	0.981	0.911	0.454	0.0
147804670	1004	hypothetical protein VITISV_022039 [Viti	0.966	0.887	0.455	0.0
147782974	1719	hypothetical protein VITISV_036826 [Viti	0.954	0.511	0.453	0.0
224140513	947	predicted protein [Populus trichocarpa]	0.979	0.953	0.452	0.0
224140517	979	predicted protein [Populus trichocarpa]	0.969	0.913	0.446	0.0
224140509	961	predicted protein [Populus trichocarpa]	0.958	0.919	0.435	0.0
225447578	1946	PREDICTED: uncharacterized protein LOC10	0.919	0.435	0.459	0.0
255548694	984	serine/threonine-protein kinase bri1, pu	0.950	0.890	0.438	0.0

>gi|359485824|ref|XP_003633343.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/979 (48%), Positives = 596/979 (60%), Gaps = 78/979 (7%)

Query: 1   MQFVFSLIFFNFTISNFTSSMLSPLCHSYERSALLQFKESLTIIRKTSSYYIWDP-CHPK 59
           ++F+  L  F   ++N +SSM  PLCH  E SALLQFK+S  I    S     +P  +PK
Sbjct: 11  VRFLLFLSSFYLMVTNSSSSMHRPLCHDSEGSALLQFKQSFLIDEHASG----NPSAYPK 66

Query: 60  TASWKP----EEANIDCCLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEW 115
            A WK     E    DCC WDGVEC+  TGHVI L L++SCL G INSSS LF LVHL+ 
Sbjct: 67  VAMWKSHGEGEREGSDCCSWDGVECDRETGHVIGLHLASSCLYGSINSSSTLFSLVHLQR 126

Query: 116 LDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNL 175
           LDL+ N F  SEIP  +  LSRL  L+LS +GF GQIPSE+L LS LV LDLS N     
Sbjct: 127 LDLSDNDFNYSEIPFGVGQLSRLRSLDLSFSGFSGQIPSELLALSKLVFLDLSANPK--- 183

Query: 176 IELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLL 235
           ++L++P L NLV+ LT+LK+L L  V ISS IP+ LA+LSSLT L L  C L G  P  +
Sbjct: 184 LQLQKPGLRNLVQNLTHLKKLHLSQVNISSTIPYELASLSSLTSLFLGECGLHGEFPMKI 243

Query: 236 GNLTKLMYL------------------------DLSFNNLLGELPTSIGNLDCLKRLDIS 271
             L  L YL                        DL+  +  GELPTSIG L  L  LDIS
Sbjct: 244 FQLPSLQYLTVRDNLDLISYLPEFQETSPLKMLDLAGTSFSGELPTSIGRLGSLTELDIS 303

Query: 272 WNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFS------- 324
               +G +P+S+G+L  L  L+LS N F G+ P SM N T+L +LSL+ NDF+       
Sbjct: 304 SCNFTGSVPSSLGHLTQLYYLDLSNNHFSGQIPSSMANLTQLIYLSLSWNDFNVGTLSWL 363

Query: 325 -----------------GELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFS 367
                            GE+P S  N+  L  L +S+ + S QIPSSL  L  L+ L   
Sbjct: 364 GQQTKLTYLYLNQINLIGEIPFSLVNMSQLNILSLSDNQLSGQIPSSLFELVNLQGLYLL 423

Query: 368 HNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFN-TSQKFNFVGLRSCNLNEFPN 426
            N  +G ++L + L   K+L +L LS NRLS  +    N T  KF  +GL SCNL EFP+
Sbjct: 424 SNYLNGTVELQL-LSKLKNLIYLQLSDNRLSFLSYTRTNATLPKFKHLGLGSCNLTEFPD 482

Query: 427 FLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDG 486
           FL+NQH LE++ LS NKIHG +PKW+   S +    L LS NFL GF Q P   P +   
Sbjct: 483 FLQNQHELEIITLSENKIHGPIPKWVWNISKETLVTLELSENFLTGFDQRPFVLPWS-KL 541

Query: 487 FTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLL 546
            TL L  N LQGPLPVPPP T  YLVS N LTG+I   ICN + SLE+LDLS NNLSG +
Sbjct: 542 HTLRLDSNMLQGPLPVPPPSTVEYLVSGNKLTGEISPLICNMT-SLELLDLSSNNLSGRI 600

Query: 547 PQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLK 606
           PQCL NFS  L +LDL  N   G IP+      +L +IDL DN  QG+IPRSLVNC+ L+
Sbjct: 601 PQCLANFSRSLFVLDLGSNSLDGPIPEICTVSHNLNVIDLGDNQFQGQIPRSLVNCTMLE 660

Query: 607 FLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFT 666
            L LGNN+I+  FP WLG L +L VLIL+SN+ HG I   +T   FP+LRIIDLS+N F 
Sbjct: 661 HLVLGNNKINDIFPFWLGALPQLQVLILRSNRFHGAIGSWHTNFRFPKLRIIDLSDNEFI 720

Query: 667 GKLPSKYFQCWNAMQVVN-TSELRYMEGMIYPFA-LVSYAALGIYDYSLTMSNKGQMMSY 724
           G LPS+YFQ W+AM++ +  S LRYM+  I P   L +   +  Y YS+TM+NKG    Y
Sbjct: 721 GDLPSEYFQNWDAMKLTDIASGLRYMQ--ISPMIDLKNNVMITGYMYSMTMTNKGMQRFY 778

Query: 725 DKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDL 784
           +++ +    +  S N F G+IPTSI +LKG+ +L+L  N L GHI S LGNLT LESLDL
Sbjct: 779 ERILDTFMAIDFSGNNFKGQIPTSIGSLKGIHLLNLGGNDLTGHIPSSLGNLTQLESLDL 838

Query: 785 SNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLCGKPLPK 844
           S NK SG+IP QL  LTFLEFFNVS+N+LTG IPQG QF TF+  SF+GNLGLCG PL +
Sbjct: 839 SQNKLSGEIPWQLTRLTFLEFFNVSHNHLTGHIPQGKQFATFENASFDGNLGLCGSPLSR 898

Query: 845 ECENDEA--PTNEDQVEGSEESLLSGTSDWKIILIGYAGGLIVGVVLGLNFSIGILEWFS 902
           EC + EA  PT+    +GS         DWKI+L+GY  GL++GV +G   +    EWF 
Sbjct: 899 ECGSSEALPPTSSSSKQGSTTKF-----DWKIVLMGYGSGLLIGVSIGYCLTSWKHEWFV 953

Query: 903 KKFGMQPKRRRRIRRARNR 921
           K  G   KR+R+  R   R
Sbjct: 954 KTIG---KRQRKWTRKEGR 969

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490156|ref|XP_003634044.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  732 bits (1889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/918 (48%), Positives = 568/918 (61%), Gaps = 46/918 (5%)

Query: 14  ISNFTSSMLSPLCHSYERSALLQFKESLTIIRKTSSYYIWDP-CHPKTASWKPE---EAN 69
           ++N +S M  PLCH  ERSALLQFK+S  I    S     DP  +PK A WK     E  
Sbjct: 2   VANSSSFMQQPLCHDSERSALLQFKQSFLIDGHASG----DPSAYPKVAMWKSHGEGEEG 57

Query: 70  IDCCLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIP 129
            DCC WDGVEC+  TGHVI L L++SCL G INS+S LF LVHL  LDL+ N F  S+IP
Sbjct: 58  SDCCSWDGVECDRETGHVIGLHLASSCLYGSINSNSTLFSLVHLRRLDLSDNDFNYSQIP 117

Query: 130 PEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKK 189
             +  LSRL  L+LSS  F GQIPSE+L LS LV L+LS N    +++L++P L  LV+ 
Sbjct: 118 FGVGQLSRLRSLDLSSDRFAGQIPSELLALSKLVFLNLSANP---MLQLQKPGLRYLVQN 174

Query: 190 LTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFN 249
           LT+LKEL L  V ISS IPH LANLSSL  L L  C L G  P  +  L  L +L + +N
Sbjct: 175 LTHLKELHLRQVNISSTIPHELANLSSLRTLFLRECGLHGEFPMNIFQLPSLQFLSVRYN 234

Query: 250 -NLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMG 308
            +L+G LP        LK L +S    SGELP SIG L SL +L++S   F G  P  +G
Sbjct: 235 PDLIGYLP-EFQETSPLKLLYLSGTSFSGELPTSIGRLGSLTKLDISSCNFTGLVPSPLG 293

Query: 309 NFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSH 368
           + ++L +L L++N FSG++P+S  NL  L  LD+S       IP+SL  L  L++L  + 
Sbjct: 294 HLSQLSYLDLSNNFFSGQIPSSMANLTRLTFLDLSLNNLEGGIPTSLFELVNLQYLSVAD 353

Query: 369 NNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFN-TSQKFNFVGLRSCNLNEFPNF 427
           N+ +G ++L                 NRLSL      N T  KF  +GL SCNL EFP+F
Sbjct: 354 NSLNGTVEL-----------------NRLSLLGYTRTNVTLPKFKLLGLDSCNLTEFPDF 396

Query: 428 LKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGF 487
           L+NQ  LEVL LS NKIHG +PKW+   S +N   L+LS N L GF QHP+  P +    
Sbjct: 397 LQNQDELEVLFLSDNKIHGPIPKWMWNISQENLESLDLSGNLLTGFNQHPVVLPWSKLSI 456

Query: 488 TLDLSYNYLQGPLPVPPPQT-KHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLL 546
            L+L  N LQGPLP+PPP T ++Y VS N L G+I   ICN S+ + +  LS NNLSG +
Sbjct: 457 -LELDSNMLQGPLPIPPPSTIEYYSVSRNKLIGEISPLICNMSSLILLD-LSSNNLSGRI 514

Query: 547 PQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLK 606
           PQCL N S  L ILDL  N   G IPQT     +L +IDL +N  QG+IPRS  NC  L+
Sbjct: 515 PQCLANLSKSLFILDLGSNNLDGPIPQTCTVPNNLRVIDLGENQFQGQIPRSFANCMMLE 574

Query: 607 FLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFT 666
            L LGNNQI   FP WLG L +L VLIL+SN+ HG I   ++   FP+LRI+DLS+N+F 
Sbjct: 575 HLVLGNNQIDDIFPFWLGALPQLQVLILRSNRFHGAIGSWHSNFRFPKLRIVDLSDNKFI 634

Query: 667 GKLPSKYFQCWNAMQVVNTS-ELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYD 725
           G LPS+YFQ W+AM++ + + +LRYM+     F +  Y     Y YS+TM+N+G    Y+
Sbjct: 635 GDLPSEYFQNWDAMKLTDIANDLRYMQARP-KFQIPGYGWTAHYMYSMTMTNRGMQRFYE 693

Query: 726 KVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLS 785
           K+P+    +  S N F G+IPTSI NL G  +L+L +N+L GHI S LG+LT LESLDLS
Sbjct: 694 KIPDVFIAIDFSGNNFKGQIPTSIGNLNGFHLLNLGSNNLTGHIPSSLGDLTQLESLDLS 753

Query: 786 NNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLCGKPLPKE 845
            N+ SG+IP QL  +TFL FFNVS+N+LTGPIPQGNQF TF   SF+GNLGLCG PL + 
Sbjct: 754 QNQLSGEIPLQLTRITFLAFFNVSHNHLTGPIPQGNQFTTFPNASFDGNLGLCGSPLSRA 813

Query: 846 CENDEA--PTNEDQVEGSEESLLSGTSDWKIILIGYAGGLIVGVVLGLNFSIGILEWFSK 903
           C + EA  PT+    +GS         DWK +L+GY  GL++GV +G   +    EWF K
Sbjct: 814 CGSSEASPPTSSSSKQGSTSEF-----DWKFVLMGYGSGLVIGVSIGYYLTSWKHEWFVK 868

Query: 904 KFGMQPKRRRRIRRARNR 921
            FG   KR+R+  R   R
Sbjct: 869 TFG---KRQRKWTRKERR 883

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485822|ref|XP_003633342.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/998 (45%), Positives = 571/998 (57%), Gaps = 93/998 (9%)

Query: 1   MQFVFSLIFFNFTISNFTSSMLSPLCHSYERSALLQFKESLTIIRKTS--SYYIWDPCHP 58
           M+F+  L  F+  ++N +SS+  PLCH  E SALLQFK+S  I    S  SY      +P
Sbjct: 11  MRFLALLSSFHLIVTNSSSSVQQPLCHDNESSALLQFKQSFLIDEYASEDSY-----AYP 65

Query: 59  KTASWKPEEANIDCCLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDL 118
           K A+WK      DCC WDGVEC+  TGHVI L L++SCL G INSSS LF LVHL  LDL
Sbjct: 66  KVATWKSHGEGSDCCSWDGVECDRETGHVIGLHLASSCLYGSINSSSTLFSLVHLRRLDL 125

Query: 119 AFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEI-LELSNLVSLDLSHNSYYNLIE 177
           + N F  SEIP  +  LSRL  LNLS + F GQIPSE+ L LS LV LDLS N    +++
Sbjct: 126 SDNDFNYSEIPHGVSQLSRLRSLNLSDSQFSGQIPSEVLLALSKLVFLDLSGNP---MLQ 182

Query: 178 LKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGN 237
           L++  L NLV+ LT  K+L L  V ISS IPH+LANLSSLT L L  C L G  P  +  
Sbjct: 183 LQKHGLRNLVQNLTLFKKLHLSQVNISSTIPHALANLSSLTSLRLRECGLHGEFPKKILQ 242

Query: 238 LTKLMYLDLSFNNLL------------------------GELPTSIGNLDCLKRLDISWN 273
           L  L +L L +N  L                        GELP S+G L  L  LDIS  
Sbjct: 243 LPSLQFLSLRYNPNLNIYFPEFQETSPLKVLYLAGTSYSGELPASMGKLSSLSELDISSC 302

Query: 274 ELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNF----------------------- 310
             +G +P+S+G+L  L  L+LS N F G  P  + N                        
Sbjct: 303 NFTGLVPSSLGHLTQLSYLDLSYNFFSGPIPSFLANLTTLTYLSLTSNNFSAGTLAWLGE 362

Query: 311 -TRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHN 369
            T+L  L L   + +GE+P+S  N+  L  L++S+ +   QIPS L NL QL  L    N
Sbjct: 363 QTKLTILYLDQINLNGEIPSSLVNMSELTILNLSKNQLIGQIPSWLMNLTQLTELYLQEN 422

Query: 370 NFSGPIDLDMF-----------------------LVNFKHLEHLSLSSNRLSLFTKAIFN 406
              GPI   +F                       L N K+L  L LS NR+SL +    N
Sbjct: 423 KLEGPIPSSLFELVNLQYLYLHSNYLTGTVELHMLSNLKNLTDLQLSYNRISLLSYTSTN 482

Query: 407 -TSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNL 465
            T  KF  +GL SCNL EFP+FL+NQ  LEVL LS NKIHG +PKW+   S +    L L
Sbjct: 483 ATLPKFKLLGLASCNLTEFPDFLQNQQELEVLILSTNKIHGPIPKWMWNISKETLEALFL 542

Query: 466 SHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWI 525
           S+NFL GF Q P   P +     L+LS N LQG LPVPP  T  Y VS N L G+IP  I
Sbjct: 543 SNNFLSGFSQVPDVLPWSRMSI-LELSSNMLQGSLPVPPSSTVEYSVSRNRLAGEIPSLI 601

Query: 526 CNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMID 585
           CN ++   +     NNLSG +PQC    S  LSIL+L+ N   G IPQT  +  +L MID
Sbjct: 602 CNLTSLSLLDLSG-NNLSGSIPQCFTKLSSSLSILNLRRNNLNGPIPQTCTNTSNLRMID 660

Query: 586 LSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIRE 645
           LS+N LQG+IP+SL +C  L+ L LGNN I+  FP WLG+L  L VLIL+ N+ HG I  
Sbjct: 661 LSENQLQGQIPKSLASCMMLEELVLGNNLINDIFPFWLGSLPRLQVLILRFNRFHGAIGS 720

Query: 646 PNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAA 705
           P T   F +LRIIDLS N FTG LPS+Y + W+AM++V+   L Y++ +   F +  Y+ 
Sbjct: 721 PKTNFEFSKLRIIDLSYNGFTGNLPSEYLKNWDAMRIVDAENLTYIQ-VDEEFEVPQYSW 779

Query: 706 LGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSL 765
              Y +S TM+NKG    Y+ +P+ L  + LSSNRF GEIP SI N  GL+ L+L+NN+L
Sbjct: 780 EEPYPFSTTMTNKGMTREYELIPDILIAIDLSSNRFHGEIPESIGNPNGLRWLNLSNNAL 839

Query: 766 HGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPT 825
            G I + L NLT LE+LDLS NK S +IPQQLV LTFL FFNVS+N+LTGPIPQG QF T
Sbjct: 840 IGAIPTSLANLTLLEALDLSQNKLSREIPQQLVQLTFLAFFNVSHNHLTGPIPQGKQFAT 899

Query: 826 FDKTSFNGNLGLCGKPLPKECENDEA--PTNEDQVEGSEESLLSGTSDWKIILIGYAGGL 883
           F + SF+GN GLCG PL + C + E   PT     +GS         DWK +L+G   GL
Sbjct: 900 FSRASFDGNPGLCGSPLSRACGSSEQSPPTPSSSKQGSTSEF-----DWKFVLMGCGSGL 954

Query: 884 IVGVVLGLNFSIGILEWFSKKFGMQPKRRRRIRRARNR 921
           ++GV +G   +    EWF K FG Q  +  R  R  +R
Sbjct: 955 VIGVSIGYCLTSWKHEWFVKTFGKQHTKWTRKERRGHR 992

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147804670|emb|CAN66864.1| hypothetical protein VITISV_022039 [Vitis vinifera]

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/993 (45%), Positives = 569/993 (57%), Gaps = 102/993 (10%)

Query: 10  FNFTISNFTSSMLSPLCHSYERSALLQFKESLTIIRKTSSYYIWDP-CHPKTASWKP--- 65
           F   ++N +SSM  PLCH  E SALLQFK+S  I  + S+    DP  +PK A WK    
Sbjct: 20  FYLMVANSSSSMRQPLCHDSESSALLQFKQSFLIDERASA----DPSAYPKVAMWKSHGE 75

Query: 66  -EEANIDCCLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFI 124
            E    DCC WDGVEC+  TGHVI L L++SCL G INSSS LF LVHL  LDL+ N F 
Sbjct: 76  GEGEESDCCSWDGVECDRETGHVIGLHLASSCLYGSINSSSTLFSLVHLRRLDLSDNDFN 135

Query: 125 CSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLG 184
            S IP  +  LSRL  L+LS + F GQIPS++L LS LV LDLS N    +++L++P L 
Sbjct: 136 YSVIPFGVGQLSRLRSLDLSYSRFSGQIPSKLLALSKLVFLDLSANP---MLQLQKPGLR 192

Query: 185 NLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYL 244
           NLV+ LT+LK+L L  V I S IPH LA+LSSLT L L  C L G  P  +  L  L YL
Sbjct: 193 NLVQNLTHLKKLHLSQVNIFSTIPHELASLSSLTSLFLRECGLHGEFPMKIFQLPSLQYL 252

Query: 245 DLSFN------------------------NLLGELPTSIGNLDCLKRLDISWNELSGELP 280
            + +N                        +  GELP SIG+LD L  LDIS    +   P
Sbjct: 253 SVRYNPDLIGYLPEFQETSPLKMLYLAGTSFYGELPASIGSLDSLTELDISSCNFTRLFP 312

Query: 281 ASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFS---------------- 324
           + + ++  L  L+LS N F G+ P  M N T+L +L L+SNDFS                
Sbjct: 313 SPLAHIPQLSLLDLSNNSFSGQIPSFMANLTQLTYLDLSSNDFSVGTLAWVGKQTKLTYL 372

Query: 325 --------GELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPID 376
                   GE+P+S  N+  L  L +S  +   QIPS L NL QL  L    N   GPI 
Sbjct: 373 YLDQMNLTGEIPSSLVNMSELTILSLSRNQLIGQIPSWLMNLTQLTELYLEENKLEGPIP 432

Query: 377 LDMF-LVNF----------------------KHLEHLSLSSNRLSLFTKAIFN-TSQKFN 412
             +F LVN                       K+L  L LS NRLSL +    N T   F 
Sbjct: 433 SSLFELVNLQSLYLHSNYLTGTVELHMLSKLKNLTGLLLSGNRLSLLSYTRTNATLPTFK 492

Query: 413 FVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIG 472
            +GL SCNL EFP+FL+NQ  L VL LS NKIHG +PKW+   S +    L LS NFL G
Sbjct: 493 LLGLGSCNLTEFPDFLQNQDELVVLSLSDNKIHGPIPKWVWNISKETLEALRLSGNFLTG 552

Query: 473 FYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSL 532
           F Q P+  P +   ++L L +N LQGPLP+PPP T  Y V  N LTG+I   ICN S SL
Sbjct: 553 FDQRPVVLPWSRL-YSLQLDFNMLQGPLPIPPPSTILYSVYGNKLTGEISPLICNMS-SL 610

Query: 533 EILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQ 592
           ++LDL+ NNLSG +PQCL NFS  LS+LDL  N   G IPQT     +L +IDL +N  +
Sbjct: 611 KLLDLARNNLSGRIPQCLANFSKSLSVLDLGSNSLDGPIPQTCTVPNNLRVIDLGENQFR 670

Query: 593 GRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGF 652
           G+IPRS  NC  L+ L LGNNQI   FP WLG L +L VLIL+SN+ HG I   +T   F
Sbjct: 671 GQIPRSFANCMMLEHLVLGNNQIDDIFPFWLGALPQLQVLILRSNRFHGAIGSWHTNFRF 730

Query: 653 PELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIY--PFALVSYAALGIY- 709
           P+L IIDLS N FTG LPS+YFQ  +AM++++  +L Y +  +   P  L +   +G   
Sbjct: 731 PKLHIIDLSYNEFTGNLPSEYFQNLDAMRILDGGQLGYKKANVVQLPIVLRTKYMMGDMV 790

Query: 710 ----DYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSL 765
               D  + M  KG    Y  +P  L  + LSSN+FDGEIP SI  L GL  L+L+NN+L
Sbjct: 791 GPRNDTHIKMMIKGMRREYKNIPYNLMNIDLSSNKFDGEIPESIGGLVGLYSLNLSNNAL 850

Query: 766 HGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPT 825
            G IL+ L NLT LE+LDLS NK  G+IPQQL  LTFL  F+VS+N+LTGPIPQG QF T
Sbjct: 851 TGPILTSLANLTQLEALDLSQNKLLGEIPQQLTQLTFLAVFSVSHNHLTGPIPQGKQFNT 910

Query: 826 FDKTSFNGNLGLCGKPLPKECENDEA----PTNEDQVEGSEESLLSGTSDWKIILIGYAG 881
           F  +SF+GN GLCG PL + C + +     P       GS         DWKI+L+GY  
Sbjct: 911 FSNSSFDGNPGLCGSPLSRVCGSSKGWSLTPPPSTFGNGSPSDF-----DWKIVLMGYGS 965

Query: 882 GLIVGVVLGLNFSIGILEWFSKKFGMQPKRRRR 914
           G+++GV +G   ++   EWF K FG Q ++ R+
Sbjct: 966 GIVMGVSIGYCLTVWKHEWFVKTFGRQQRKLRK 998

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782974|emb|CAN66148.1| hypothetical protein VITISV_036826 [Vitis vinifera]

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/971 (45%), Positives = 562/971 (57%), Gaps = 91/971 (9%)

Query: 25   LCHSYERS--ALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCLWDGVECNE 82
            LC   E S   LL+FK+S  I +  S        +PK A+WK EE + DCC WDGVECN+
Sbjct: 765  LCDDNESSDDPLLEFKQSFVIAQHASDXPF---AYPKVATWKSEEGS-DCCSWDGVECNK 820

Query: 83   NTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLN 142
            +TGHVI LDL +SCL G INSSS LF LVHL+ LDL+ N F  S IP  +  LS L  LN
Sbjct: 821  DTGHVIGLDLGSSCLYGSINSSSTLFLLVHLQSLDLSDNDFNYSNIPSGVDQLSSLRSLN 880

Query: 143  LSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVT 202
            LSS+ F GQIPSE+L LS LV LDLS N      +L++P+L NLV+KL +LK L L  V 
Sbjct: 881  LSSSRFSGQIPSEVLALSKLVFLDLSQNQX----KLQKPDLRNLVQKLIHLKNLDLSQVN 936

Query: 203  ISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLL---------- 252
            ISSP+P +LAN SSL  L L  C L G  P  +  L  L +L +  N  L          
Sbjct: 937  ISSPVPDTLANYSSLXSLFLENCGLSGEFPRDILQLPSLQFLSVRNNPDLTGYLPEFQET 996

Query: 253  --------------GELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNR 298
                          G LP S+ NL  L  LDIS    +G + +SIG L+ L  L+LS N 
Sbjct: 997  SPLKLLTLAGTSFSGGLPASVDNLYSLNELDISSCHFTGLVSSSIGQLSQLTHLDLSRNS 1056

Query: 299  FRGKTPHSMGNFTRLYWLSLASNDFSGE------------------------LPASFGNL 334
            FRG+ P S+ N ++L +L ++SN+FSGE                        +P    NL
Sbjct: 1057 FRGQIPSSLANLSQLTFLEVSSNNFSGEAMDWVGKLTKLTHLGLDSINLKGEIPPFLANL 1116

Query: 335  RSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMF-LVNFK--HLEHLS 391
              L+ L +   + + +IPS + NL +L  L   +N   GPI   +F LVN +  +L    
Sbjct: 1117 TQLDYLSLEFNQLTGKIPSWVMNLTRLTSLALGYNKLHGPIPSSIFELVNLEILYLRSXD 1176

Query: 392  LS--------------------SNRLSLFTKAIFN-TSQKFNFVGLRSCNLNEFPNFLKN 430
            L+                     N+L L T    N    KF  +GL SCNL EFP+FL+N
Sbjct: 1177 LTGILELDMLLKLKKLTRLGLXDNKLLLRTDTSSNGXGPKFKVLGLASCNLGEFPHFLRN 1236

Query: 431  QHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLD 490
            Q  LE+L LS NKIHGK+PKW+     +  S ++L+HNFL GF Q  +  P       L+
Sbjct: 1237 QDELELLKLSNNKIHGKIPKWIWNIGKETLSLMDLAHNFLTGFEQPXVXLPW-XSLIYLE 1295

Query: 491  LSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCL 550
            LS N LQG LPVPP     Y V NN  TGKIP   CN S  L +LDLS N LSG++P+CL
Sbjct: 1296 LSSNMLQGSLPVPPSSISTYFVENNRFTGKIPPLXCNLS-LLHMLDLSNNTLSGMIPECL 1354

Query: 551  DNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDL 610
             N  + LS+L+L  N F G+IPQ F  G  L MIDLS NLL+G +PRSL NC+ L+ L+L
Sbjct: 1355 SNLXNSLSVLNLXGNNFHGAIPQAFEVGSKLKMIDLSQNLLEGPVPRSLTNCTVLESLNL 1414

Query: 611  GNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLP 670
            GNNQIS TFP WLG L EL VLIL+SN+ HG I +P T   FP+LRIIDLS N F+G LP
Sbjct: 1415 GNNQISDTFPFWLGALPELQVLILRSNRFHGAIGKPRTNFEFPKLRIIDLSYNSFSGNLP 1474

Query: 671  SKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNF 730
            S YF  W AM+ ++     YM+     F+  +Y     Y YS+TM+NKG    Y+K+P  
Sbjct: 1475 SVYFLDWIAMKSIDADNFTYMQAS-SGFSTQTYKLYDNYTYSMTMTNKGMERVYEKIPGI 1533

Query: 731  LTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFS 790
               +  SSN+F GEIPTSI  LKGL +L+ + NSL G I + L NLT LE+LDLS N   
Sbjct: 1534 FRAIDFSSNKFKGEIPTSIGTLKGLHLLNFSXNSLTGRIPTSLRNLTELEALDLSQNNLL 1593

Query: 791  GQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLCGKPLPKECENDE 850
            G+IPQQL ++TFL FFNVS+NNLTGPIPQ  QF TF   S+ GN GLCG PL ++C N +
Sbjct: 1594 GEIPQQLTEMTFLGFFNVSHNNLTGPIPQXKQFDTFQSDSYEGNPGLCGNPLIRKCGNPK 1653

Query: 851  APTNEDQVEGSEESLLSGTS-DWKIILIGYAGGLIVGVVLGLNFSIGILEWFSKKFGMQP 909
              + +       + L   +  D K++L+GY   L+ GV++G  F+    EWF K FG   
Sbjct: 1654 QASPQPSTSEQGQDLEPASXFDRKVVLMGYXSXLVFGVIIGYIFTTRKHEWFVKTFG--- 1710

Query: 910  KRRRRIRRARN 920
              RR+ ++ RN
Sbjct: 1711 --RRQQQQERN 1719

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140513|ref|XP_002323627.1| predicted protein [Populus trichocarpa] gi|222868257|gb|EEF05388.1| predicted protein [Populus trichocarpa]

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/952 (45%), Positives = 573/952 (60%), Gaps = 49/952 (5%)

Query: 1   MQFVFSLIFFNFTISNFTSSMLSPLCHSYERSALLQFKESLTIIRKTSSYYIWDPC-HPK 59
           M  +F L FF+    + + SM  PLCH  E  AL+QFKESL I R  S    +DP  +PK
Sbjct: 12  MLSLFLLSFFHLRACHSSPSM-QPLCHDEESHALMQFKESLVIHRSAS----YDPAAYPK 66

Query: 60  TASWKPEEANIDCCLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLA 119
            ASW  +  + DCC WDGVEC+ ++GHVI LDLS+SCL G I+S+S LF LV L  LDLA
Sbjct: 67  VASWSVDRESGDCCSWDGVECDGDSGHVIGLDLSSSCLYGSIDSNSSLFHLVQLRRLDLA 126

Query: 120 FNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELK 179
            N F  S+IP EI NLSRL  L+LS + F GQIP+EILELS LVSLDL  NS    ++L+
Sbjct: 127 DNDFNNSKIPSEIRNLSRLFDLDLSYSSFSGQIPAEILELSKLVSLDLGWNS----LKLQ 182

Query: 180 EPNLGNLVKKLTNLKELA------------------------LGGVTISSPIPHSLANLS 215
           +P L +LVK L NL+ L+                        L G + S  +P S+ NL 
Sbjct: 183 KPGLEHLVKALINLRFLSIQHNPYLSGYFPEIHWGSQLQTLFLAGTSFSGKLPESIGNLK 242

Query: 216 SLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNEL 275
           SL    +  C   G IPS LGNLTKL YLDLSFN   G++P++  NL  +  L +S+N  
Sbjct: 243 SLKEFDVGDCNFSGVIPSSLGNLTKLNYLDLSFNFFSGKIPSTFVNLLQVSYLSLSFNNF 302

Query: 276 SGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLR 335
                  +GNL +L+ ++L      G  P S+ N T+L  L+L  N  +G++P+  GN  
Sbjct: 303 RCGTLDWLGNLTNLKIVDLQGTNSYGNIPSSLRNLTQLTALALHQNKLTGQIPSWIGNHT 362

Query: 336 SLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSN 395
            L  L +   K    IP S+  L  L+ L+ + N FSG +DL++ L+ F++L  L LS  
Sbjct: 363 QLISLYLGVNKLHGPIPESIYRLQNLEQLDLASNFFSGTLDLNL-LLKFRNLVSLQLSYT 421

Query: 396 RLSLFTKAIFNTSQ-KFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIE 454
            LSL         Q K   + L   NL EFP+FL++Q++LE+LDL+ +K+ G++PKW + 
Sbjct: 422 NLSLLNSNNATIPQSKLELLTLSGYNLGEFPSFLRDQNHLELLDLADDKLDGRIPKWFMN 481

Query: 455 PSMQNFSYLNLSHNFLIGFYQHPMFFP-RNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVS 513
            S      L L+ N L GF Q     P +N    +L L  N LQG LP+PPP    Y V 
Sbjct: 482 MSTITLEALCLTGNLLTGFEQSFDVLPWKNLR--SLQLYSNKLQGSLPIPPPAIFEYKVW 539

Query: 514 NNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQ 573
           NN LTG+IP  IC+ + SL +L+LS NNLSG LP CL N S   S+L+L+HN F G IP+
Sbjct: 540 NNKLTGEIPKVICDLT-SLSVLELSNNNLSGKLPPCLGNKSRTASVLNLRHNSFSGDIPE 598

Query: 574 TFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLI 633
           TF SG SL ++D S N L+G+IP+SL NC+ L+ L+L  N I+  FPSWLG L +L V+I
Sbjct: 599 TFTSGCSLRVVDFSQNKLEGKIPKSLANCTELEILNLEQNNINDVFPSWLGILPDLRVMI 658

Query: 634 LKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQ-VVNTSELRYME 692
           L+SN LHG+I  P T   FP L+I+DLSNN F GKLP +YF+ W AM+ V N   L YM+
Sbjct: 659 LRSNGLHGVIGNPETNVEFPTLQIVDLSNNSFKGKLPLEYFRNWTAMKNVRNDQHLIYMQ 718

Query: 693 GMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANL 752
                F        G Y+YS+TM+NKG M  Y+K+ + LT + LS N F+G IP  + +L
Sbjct: 719 ANA-SFQTSQIRMTGKYEYSMTMTNKGVMRLYEKIQDSLTVIDLSRNGFEGGIPEVLGDL 777

Query: 753 KGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNN 812
           K L +L+L+NN L G I   L NL  LE+LDLS NK SG+IP QL  LTFL  FNVS+N 
Sbjct: 778 KALHLLNLSNNFLSGGIPPSLSNLKKLEALDLSQNKLSGEIPVQLAQLTFLAVFNVSHNF 837

Query: 813 LTGPIPQGNQFPTFDKTSFNGNLGLCGKPLPKECENDEAPTNEDQVEGSEESLLSGTS-- 870
           L+G IP+GNQF TFD TSF+ N  LCG+PL KEC N+     ED +  ++E   SG    
Sbjct: 838 LSGRIPRGNQFETFDNTSFDANPALCGEPLSKECGNN----GEDSLPAAKEDEGSGYQLE 893

Query: 871 -DWKIILIGYAGGLIVGVVLGLNFSIGILEWFSKKFGMQPKRRRRIRRARNR 921
             WK+++IGYA GL++GV+LG   +    EW  K +  + + + +  + R R
Sbjct: 894 FGWKVVVIGYASGLVIGVILGCAMNTRKYEWLVKNYFARRQNKGQDLKTRLR 945

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140517|ref|XP_002323629.1| predicted protein [Populus trichocarpa] gi|222868259|gb|EEF05390.1| predicted protein [Populus trichocarpa]

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/987 (44%), Positives = 580/987 (58%), Gaps = 93/987 (9%)

Query: 1   MQFVFSLIFFNFTISNFTSSMLSPLCHSYERSALLQFKESLTIIRKTSSYYIWDP-CHPK 59
           M F+FSL  F+     ++S  + PLCH  E  ALLQ KESL I    SS    DP  +PK
Sbjct: 12  MLFLFSLSLFHLRAC-YSSPSMQPLCHEDESYALLQIKESLVINESASS----DPSAYPK 66

Query: 60  TASWKPEEANIDCCLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLA 119
            ASW+ +  + DCC WDGVEC+ ++GHVI LDLS+SCL G I+S+S LF+LV L  L LA
Sbjct: 67  VASWRVDGESGDCCSWDGVECDGDSGHVIGLDLSSSCLYGSIDSNSSLFRLVLLRRLHLA 126

Query: 120 FNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELK 179
            N F  SEIP EI NLSRL  LNLS +GF GQIP+EILELS LVSLDL  NS    ++L+
Sbjct: 127 DNDFNKSEIPSEIRNLSRLFDLNLSMSGFSGQIPAEILELSKLVSLDLGVNS----LKLQ 182

Query: 180 EPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLT 239
           +P L +LV+ LTNL+ L L GV IS+ +P  + NLSSL+ L L  C L+G  P  +  L 
Sbjct: 183 KPGLQHLVEALTNLEVLHLTGVNISAKVPQIMTNLSSLSSLFLRDCGLQGEFPMGIFQLP 242

Query: 240 KLMYLDLSFNNLL------------------------GELPTSIGNLDCLKRLDISWNEL 275
            L +L +  N  L                        G+LP SIGNL  +K LD++    
Sbjct: 243 NLRFLSIRNNPYLTGYLSEFQSGSQLEILYLAGTSFSGKLPVSIGNLKSMKELDVAACYF 302

Query: 276 SGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLR 335
           SG +P+S+GNL  L+ L+LS N F GK P +  N  +L  LSL+SN+F  +     GNL 
Sbjct: 303 SGVIPSSLGNLTKLDYLDLSHNSFYGKIPSTFVNLLQLTDLSLSSNNFRSDTLDWLGNLT 362

Query: 336 SLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPID---------LDMFL----- 381
           +L  +D+++      IPSSLRNL QL  L    N  +G I          + ++L     
Sbjct: 363 NLNYVDLTQTNSYGNIPSSLRNLTQLTVLRLHGNKLTGQIQSWIGNHTQLISLYLGFNKL 422

Query: 382 --------VNFKHLEHLSLSSNRLS----------------LFTKAIFNTSQ-------K 410
                      ++LE L LS+N  S                 +      TS        K
Sbjct: 423 HGPIPESIYRLQNLEELDLSNNFFSGSLELNRFRNLNSLLLSYNNLSLLTSHNATFPLPK 482

Query: 411 FNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFL 470
              + L  CN+ E P FL++Q+ LE+L++  NK+ G +PKW +  S      L+L+ N L
Sbjct: 483 LQLLSLEGCNIGELPGFLRDQNQLEILEIGDNKLEGHIPKWFMNMSTITLEALSLAGNLL 542

Query: 471 IGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSN 530
            GF Q     P N +  +L L+ N  QG LP+PPP    Y VSNN L G+IP  ICN + 
Sbjct: 543 TGFEQSFDVLPWN-NLRSLSLNSNKFQGSLPIPPPAIFEYKVSNNKLNGEIPEVICNLT- 600

Query: 531 SLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNL 590
           SL +LDLS NNLSG LPQCL N S   S+L+L +N F G IP+TF SG SL ++D S N 
Sbjct: 601 SLFVLDLSINNLSGKLPQCLGNKSSTASVLNLHNNSFSGDIPETFTSGCSLRVVDFSQNK 660

Query: 591 LQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGC 650
           L+G+IP+SL NC+ L+ L+L  N I+  FPSWLG L +L V+IL+SN LHG+I +P T  
Sbjct: 661 LEGKIPKSLANCTELEILNLEQNNINDVFPSWLGVLPDLRVMILRSNGLHGVIGKPETNV 720

Query: 651 GFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYD 710
            FP L+I+DLSNN F GKLP +YF+ W AM+ V   +L YM+     F          Y+
Sbjct: 721 EFPRLQIVDLSNNSFKGKLPLEYFRNWTAMKNVRNEDLIYMQANT-SFLTSHNTMEKQYE 779

Query: 711 YSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHIL 770
           YS+TM+NKG M  Y+K+ + LT + LSSN F+G IP  + +LK L +L+L+NN L G I 
Sbjct: 780 YSMTMTNKGVMRLYEKIQDSLTAIDLSSNGFEGGIPEVLGDLKALHLLNLSNNFLSGGIP 839

Query: 771 SCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTS 830
             L NL  LE+LDLS+NK SG+IP QL  LTFL  FNVS+N L+G IP+GNQF TFD TS
Sbjct: 840 PSLSNLKELEALDLSHNKLSGEIPVQLAQLTFLAVFNVSHNFLSGRIPRGNQFETFDNTS 899

Query: 831 FNGNLGLCGKPLPKECENDEAPTNEDQVEGSEESLLSGT---SDWKIILIGYAGGLIVGV 887
           F+ N GLCG+PL KEC N      ED +  ++E   SG+   S WK+++IGYA GL++GV
Sbjct: 900 FDANPGLCGEPLSKECGN-----GEDSLPAAKEDEGSGSPPESRWKVVVIGYASGLVIGV 954

Query: 888 VLGLNFSIGILEWFSKKFGMQPKRRRR 914
           +LG   +    EW  + +     RR R
Sbjct: 955 ILGCAMNTRKYEWLVENYF---ARRHR 978

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140509|ref|XP_002323625.1| predicted protein [Populus trichocarpa] gi|222868255|gb|EEF05386.1| predicted protein [Populus trichocarpa]

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/976 (43%), Positives = 568/976 (58%), Gaps = 92/976 (9%)

Query: 22  LSPLCHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCLWDGVECN 81
           + PLC+  E  ALLQFKESL I    SSY       PK ASWK +  + DCC W+GVEC+
Sbjct: 1   MQPLCNDEESHALLQFKESLVINESASSY---SSACPKVASWKVDGESGDCCSWEGVECD 57

Query: 82  ENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYL 141
            ++GHVI LDLS+SCL G I+S+S LF LV L  L+LA N F  S+IP EI NL RL  L
Sbjct: 58  RDSGHVIGLDLSSSCLHGSIDSNSSLFHLVQLRRLNLADNDFNNSKIPSEIRNLPRLFDL 117

Query: 142 NLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGV 201
           NLS  GF GQIP+EILELS LVSLDL  NS    ++L++P L +LV+ LTNL+ L L  V
Sbjct: 118 NLSITGFTGQIPAEILELSKLVSLDLGLNS----LKLQKPGLQHLVEALTNLEVLHLSEV 173

Query: 202 TISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLL--------- 252
            IS+ +P  + NLSSL+ L L  C L+G  P  +  L  L +L++ +N  L         
Sbjct: 174 NISAKVPQVMTNLSSLSSLFLRDCGLQGEFPMGIFQLPNLRFLNIRYNPHLTGYLPEFQL 233

Query: 253 ---------------GELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLN 297
                          G+LP S+GNL  +K  D++    SG +P+S+GNL  L  L+LS N
Sbjct: 234 GNQLEKLLLARTSFSGQLPGSLGNLKSMKEFDVAGCYFSGVIPSSLGNLTKLNYLDLSSN 293

Query: 298 RFRGKTP------------------------HSMGNFTRLYWLSLASNDFSGELPASFGN 333
            F GK P                        H + N T+L ++ LA  +  GE+P+  GN
Sbjct: 294 VFFGKIPRSVVNLLQLTDLSLSSNNFSSGTLHWLCNLTKLNYVDLAQTNSYGEIPSCLGN 353

Query: 334 LRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMF------------- 380
           L  L  L++   + + QIPS + N  QL  L+  HN   GPI   +F             
Sbjct: 354 LTQLTELNLDANELTGQIPSWIGNKTQLISLDLGHNKLHGPISESIFWLPNLEILDLEEN 413

Query: 381 ---------LVNFKHLEHLSLSSNRLSLFTKAIFNTS-QKFNFVGLRSCNLN-EFPNFLK 429
                    L+  + L    LS N LS+      + +  K   +GL  CNL+ EFP+FL 
Sbjct: 414 LFSGTVEFGLLKSRSLVSFQLSGNNLSVIGNHNDSAALPKIQILGLGGCNLSGEFPSFLH 473

Query: 430 NQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTL 489
            Q++LE ++L  NKI G +P W +    +   +L+L  N L GF Q     P N   + L
Sbjct: 474 GQNHLEFVELGGNKIEGHIPTWFMNLGTETLWHLDLIGNLLTGFEQSVDILPWNNLRY-L 532

Query: 490 DLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQC 549
            LS+N L G LP+PP     Y+VS+N L G+IP  ICN + SL IL LS NNLSG LPQC
Sbjct: 533 RLSFNKLDGALPIPPHSIIIYIVSDNHLNGEIPPAICNLT-SLVILQLSNNNLSGKLPQC 591

Query: 550 LDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLD 609
           L N S+  S+LDL++N F G IP+ F SG +L  ID S N L+G+IP+SL NC+ L+ L+
Sbjct: 592 LGNISNTASVLDLRNNTFSGDIPEAFSSGCTLRAIDFSQNQLEGKIPKSLANCTKLEILN 651

Query: 610 LGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKL 669
           +  N+I+  FPSWLG L +L VLIL+SN+LHG+I +P     F  L+I+DLS N F G L
Sbjct: 652 IEQNKITDVFPSWLGILPKLRVLILRSNRLHGVIGKPKANFEFQRLQIVDLSGNCFLGNL 711

Query: 670 PSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPN 729
           P +YF+ W+AM+ +      YM+ ++  F L  Y     +DYS+TM+NKG M  Y+K+  
Sbjct: 712 PLEYFRNWSAMKTIYKERPLYMQ-VVSSFQLPRYGMTYHFDYSMTMTNKGVMTLYEKIQE 770

Query: 730 FLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKF 789
           FLT + LSSNRF+G IP ++ +LK L +L+L+NN L G I   L NL GLE+LDLS NK 
Sbjct: 771 FLTAIDLSSNRFEGGIPDALGDLKELYLLNLSNNFLTGRIPPSLSNLKGLEALDLSQNKL 830

Query: 790 SGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLCGKPLPKECEND 849
           SG+IP QL  LTFL  FNVS+N L+GPIP+GNQF TFD TSF+ + GLCGKPL K+C + 
Sbjct: 831 SGEIPVQLAQLTFLAVFNVSHNLLSGPIPRGNQFETFDSTSFDADSGLCGKPLSKKCGSG 890

Query: 850 E----APTNEDQVEGSEESLLSGTSDWKIILIGYAGGLIVGVVLGLNFSIGILEWFSKKF 905
           E    AP  +   EGS   L  G   W +++IGYA GL+ G +LG   +    EW  K +
Sbjct: 891 EDSLPAPKED---EGSGSPLEFG---WTVVVIGYASGLVTGAILGCVMNTRKYEWQVKNY 944

Query: 906 GMQPKRRRRIRRARNR 921
            +  + + +  + R R
Sbjct: 945 FVSWQHKGQYLKTRLR 960

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447578|ref|XP_002270154.1| PREDICTED: uncharacterized protein LOC100264911 [Vitis vinifera]

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/935 (45%), Positives = 541/935 (57%), Gaps = 87/935 (9%)

Query: 56   CHPKTASWKPEEANIDCCLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEW 115
            C+    + K EE   DCC W GVEC+  +GHVI L L++S L G IN SS LF LVHL  
Sbjct: 1022 CYNSGETLKNEEGR-DCCSWHGVECDRESGHVIGLHLASSHLYGSINCSSTLFSLVHLRR 1080

Query: 116  LDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNL 175
            LDL+ N F  S IP  +  LSRL  LNLS++ F GQIPS++L LS LVSLDLS N     
Sbjct: 1081 LDLSDNDFNYSRIPHGVGQLSRLRSLNLSNSQFSGQIPSKLLALSKLVSLDLSSNP---T 1137

Query: 176  IELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRG------ 229
            ++L++P+L NLV+ L +LKEL L  V ISS +P  LANLSSL  LSL  C L G      
Sbjct: 1138 LQLQKPDLRNLVQNLIHLKELHLSQVNISSTVPVILANLSSLRSLSLENCGLHGEFPMGI 1197

Query: 230  -RIPSL-----------------LGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDIS 271
             ++PSL                   N + L YLDL + +  G+LP SIG L  LK LDI 
Sbjct: 1198 FKLPSLELLDLMSNRYLTGHLPEFHNASHLKYLDLYWTSFSGQLPASIGFLSSLKELDIC 1257

Query: 272  WNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFS------- 324
                SG +P ++GNL  L  L+LS N F+G+   S+ N   L +L ++ NDFS       
Sbjct: 1258 SCNFSGMVPTALGNLTQLTHLDLSSNSFKGQLTSSLTNLIHLNFLDISRNDFSVGTLSWI 1317

Query: 325  ------------------GELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEF 366
                              GE+  S  NL  L  L++   + + +IP  L NL  LK L  
Sbjct: 1318 IVKLTKFTALNLEKTNLIGEILPSLSNLTGLTYLNLEYNQLTGRIPPCLGNLTLLKTLGL 1377

Query: 367  SHNNFSGPIDLDMF-----------------------LVNFKHLEHLSLSSNRLSLFTKA 403
             +NN  GPI   +F                       LV  K+L  L LS N LSL T  
Sbjct: 1378 GYNNLEGPIPSSIFELMNLDTLILRANKLSGTVELNMLVKLKNLHKLGLSHNDLSLLTNN 1437

Query: 404  IFNTS-QKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSY 462
              N S  +   +GL SCNL+EFP+FL+NQ  L+ L LS NKIHG++PKW+     +    
Sbjct: 1438 SLNGSLPRLRLLGLASCNLSEFPHFLRNQDELKFLTLSDNKIHGQIPKWMWNMGKETLWV 1497

Query: 463  LNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIP 522
            ++LS+N L  F Q P+  P       L+LSYN LQG LPVPP     Y V NN L GK P
Sbjct: 1498 MDLSNNLLTCFEQAPVVLPW-ITLRVLELSYNQLQGSLPVPPSSISDYFVHNNRLNGKFP 1556

Query: 523  FWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLM 582
              IC S + L ILDLS NNLSG++PQCL + SD LS+L+L+ N F GSIPQTF S   L 
Sbjct: 1557 SLIC-SLHHLHILDLSNNNLSGMIPQCLSDSSDSLSVLNLRGNNFHGSIPQTFTSQCRLK 1615

Query: 583  MIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGM 642
            MID S N L+G+IPRSL NC  L+ L+LGNNQI+ TFP WLG+  EL +LIL+ N+ HG 
Sbjct: 1616 MIDFSYNQLEGQIPRSLGNCKELEILNLGNNQINDTFPFWLGSFPELQLLILRHNRFHGA 1675

Query: 643  IREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVS 702
            I  P     FP L IIDLS N F G LP+ YF  W AM  V+     YM+ M     + +
Sbjct: 1676 IENPRANFEFPTLCIIDLSYNNFAGNLPAGYFLTWVAMSRVDEENFSYMQSMTGFVLIRT 1735

Query: 703  YAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLAN 762
            Y     Y+YS+TM+NKG    Y K+P     + LSSN+F GEIP SI  L+GL +L++++
Sbjct: 1736 YRLYENYNYSMTMTNKGMERVYPKIPRSFKAIDLSSNKFIGEIPKSIGKLRGLHLLNISS 1795

Query: 763  NSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQ 822
            NSL GHI S LGNL  LE+LDLS N  SG+IPQQL  +TFLEFFNVS+N+L GPIPQG Q
Sbjct: 1796 NSLTGHIPSFLGNLAQLEALDLSQNNLSGEIPQQLKGMTFLEFFNVSHNHLMGPIPQGKQ 1855

Query: 823  FPTFDKTSFNGNLGLCGKPLPKECENDEA---PTNEDQVEGSEESLLSGTSDWKIILIGY 879
            F TF   S+ GN GLCG PL KECEN ++   P   D+  G  ES      +  I+L+GY
Sbjct: 1856 FNTFQNDSYEGNPGLCGNPLSKECENSKSTAPPPPTDKHGGDLES--GRKVELMIVLMGY 1913

Query: 880  AGGLIVGVVLGLNFSIGILEWFSKKFGMQPKRRRR 914
              GL+VG+ +G   +    EWF K FG   KR+R+
Sbjct: 1914 GSGLVVGMAIGYTLTTRKHEWFVKTFG---KRQRK 1945

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548694|ref|XP_002515403.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223545347|gb|EEF46852.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/972 (43%), Positives = 576/972 (59%), Gaps = 96/972 (9%)

Query: 23  SPLCHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCLWDGVECNE 82
           S +CH  ERSAL QFKESL +       +  DP   K +SW  +    +CC W G+ECN 
Sbjct: 24  SSICHDDERSALWQFKESLVV-----DNFACDP-SAKLSSWSLQGDMNNCCSWGGIECNN 77

Query: 83  NTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLN 142
           NTGHVI LDLS+SCL G INSSS +F+L++L  L+LA N F  S IP EI  LS L+YLN
Sbjct: 78  NTGHVIALDLSSSCLYGSINSSSTIFRLIYLTSLNLADNNFNASTIPSEIRTLSSLTYLN 137

Query: 143 LSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVT 202
           LS + F  QIP ++LELS LVSLDLS N     ++L+ P+L +LV+KL +L +L L GVT
Sbjct: 138 LSLSNFSNQIPIQVLELSKLVSLDLSDNP----LKLQNPSLKDLVEKLAHLSQLHLNGVT 193

Query: 203 ISSPIPH---------------------------SLANL--------------------- 214
           ISS +P                             L NL                     
Sbjct: 194 ISSEVPQSLANLSFLSSLLLRDCKLQGEFPVKIFQLPNLRILIVRLNPDLTGYLPEFQVG 253

Query: 215 SSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNE 274
           SSL  L L G    G++P  +GNL  L           G +P SIG+L  L  LD+S+N 
Sbjct: 254 SSLEALWLEGTNFSGQLPHSIGNLKLLSSFVAGSCRFGGPIPPSIGDLGNLNFLDLSYNN 313

Query: 275 LSGELPASIGNLASLEQLELSLNRF------------------------RGKTPHSMGNF 310
            SG++P+S GNL  L  L LS N F                         G  P S+GN 
Sbjct: 314 FSGKIPSSFGNLLQLTYLSLSFNNFSPGTLYWLGNLTNLYFLNLAQTNSHGNIPSSVGNM 373

Query: 311 TRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNN 370
           T+L +L L SN  +G++P+  GNL +L  L ++  +    IP S+  L  L+ LE   NN
Sbjct: 374 TKLIYLRLYSNKLTGQVPSWLGNLTALLELQLAANELQGPIPESIFELPSLQVLELHSNN 433

Query: 371 FSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFN-TSQKFNFVGLRSCNLNEFPNFLK 429
            SG +  D+FL + K+L  L LS N LSL +    N T  +F  +GL SCNL+EFP FL+
Sbjct: 434 LSGTLKFDLFLKS-KNLVSLQLSDNHLSLISSPPINITVHRFKTLGLNSCNLSEFPFFLR 492

Query: 430 NQH-YLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFT 488
            ++  LE LDLS N+I G +P W+ +   ++   LNL+ NFL GF +     P   +   
Sbjct: 493 GENDDLEHLDLSQNEIQGLIPDWITDLGTESLIILNLASNFLTGFERPFNVLPWK-NLHV 551

Query: 489 LDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQ 548
           L+LS N L+GPLP+PPP    Y++S NSLTG+I    CN ++ L  LDLS NNLSG LP+
Sbjct: 552 LNLSANNLEGPLPIPPPSISIYIISQNSLTGEISPMFCNLTSVL-TLDLSRNNLSGSLPR 610

Query: 549 CLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFL 608
           CL NFS+ + ++DL+ N F G+IP  F S   + M+D S N L+G++PRSL NC+ L+ L
Sbjct: 611 CLGNFSNFVLVMDLRSNNFSGTIPDRFESECKVRMMDFSHNKLEGKLPRSLANCTKLEML 670

Query: 609 DLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGK 668
           +LGNNQI   FPSW G L +L VLIL+SN+L G++ +P T   FP+L+IIDLS+N FTG+
Sbjct: 671 NLGNNQIYDVFPSWAGLLPQLRVLILRSNRLVGVVGKPETNFDFPQLQIIDLSDNTFTGE 730

Query: 669 LPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVP 728
           LP +YFQ W AM+ ++  +L+Y+E  I  F ++ Y+    + YS+T++NKG+  +Y+++ 
Sbjct: 731 LPFEYFQKWTAMKSIDQDQLKYIEVDI-SFQVLDYSWSNHFSYSITITNKGRETTYERIL 789

Query: 729 NFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNK 788
            F   +  SSNRF+G IP  I NL+ +Q+L+L+NN L G I   LG++  LE+LDLS N+
Sbjct: 790 KFFAVINFSSNRFEGRIPEVIGNLREVQLLNLSNNILTGQIPPSLGSMKELEALDLSRNQ 849

Query: 789 FSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLCGKPLPKECEN 848
            SG+IP +L  L+FL FFNVS+NNLTGP+P+GNQF TF+  SF+ N GLCG PL K+C  
Sbjct: 850 LSGEIPMKLAQLSFLAFFNVSDNNLTGPVPRGNQFDTFENNSFDANPGLCGNPLSKKCGF 909

Query: 849 DE----APTNEDQVEGSEESLLSGTSDWKIILIGYAGGLIVGVVLGLNFSIGILEWFSKK 904
            E    AP+N +Q +GSE  L  G   WK++L GYA GL++GVV+G        EW    
Sbjct: 910 SEASTLAPSNFEQDQGSEFPLEFG---WKVVLFGYASGLVIGVVIGCILDTEKNEWLVNT 966

Query: 905 FG-MQPKRRRRI 915
           F   Q K RR +
Sbjct: 967 FANWQLKVRRTL 978

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	922
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.783	0.708	0.381	3.3e-118
TAIR|locus:2087253	884	RLP39 "AT3G24900" [Arabidopsis	0.818	0.854	0.372	3.5e-114
TAIR|locus:2046357	890	RLP23 "receptor like protein 2	0.793	0.822	0.379	4.5e-114
TAIR|locus:2086974	881	RLP41 "AT3G25010" [Arabidopsis	0.818	0.856	0.366	8.4e-113
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.869	0.850	0.353	4.6e-112
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.708	0.656	0.388	3.8e-110
TAIR|locus:2119430	741	RLP47 "receptor like protein 4	0.665	0.828	0.391	1.6e-109
TAIR|locus:2829370	915	RLP40 "receptor like protein 4	0.822	0.828	0.362	1.5e-108
TAIR|locus:2046585	808	RLP27 "receptor like protein 2	0.663	0.757	0.411	2.4e-108
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.855	0.885	0.348	4.4e-107

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 1164 (414.8 bits), Expect = 3.3e-118, P = 3.3e-118
 Identities = 290/760 (38%), Positives = 418/760 (55%)

Query:   110 LVHLEWLDLAFNYFICSEIPPEIIXXXXXXXXXXXXAGFFGQIPSEILELSNLVSLDLSH 169
             L +L  LD+++   I SEIP E                 FG+ PS IL + NL S+DL +
Sbjct:   226 LRNLRELDMSY-VKISSEIPEEFSNIRSLRSLNLNGCNLFGEFPSSILLIPNLQSIDLGN 284

Query:   170 NSYYNLIELKEPNL-GNL--VKKLTNLKELALGGVTISSPIPHXXXXXXXXXXXXXXGCE 226
             N          PNL GNL    +  +L +L +   + S  IP                  
Sbjct:   285 N----------PNLRGNLPVFHENNSLLKLTILYTSFSGAIPDSISSLKNLTSLTLSVSY 334

Query:   227 LRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNL 286
               G+IP  LGNL+ L +L LS NNL+GE+P+SIGNL+ L    +  N+LSG LPA++ NL
Sbjct:   335 FSGKIPFSLGNLSHLSHLSLSSNNLIGEIPSSIGNLNQLTNFYVGGNKLSGNLPATLSNL 394

Query:   287 ASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECK 346
               L  + LS N+F G  P S+   ++L +     N F G + +    + SL  + +S  +
Sbjct:   395 TKLNTISLSSNQFTGSLPPSISQLSKLKFFFADDNPFIGAILSPLLKIPSLTRIHLSYNQ 454

Query:   347 FSSQIPSSLRNLAQLKFLE---FSHNNFSG--PIDLDMFLVNFKHLEHLSLSSNRLSLFT 401
              +  +   + N+  L  LE     H N++   P+DL++F  + K L  L +S   +S  T
Sbjct:   455 LNDLV--GIENIFMLPNLETFYIYHYNYTKVRPLDLNVFS-SLKQLGTLYISRIPIST-T 510

Query:   402 KAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFS 461
                 +      ++ LRSCN+ +FP F++    L++LDLS NKI G+VP WL    M   +
Sbjct:   511 NITSDFPSNLEYLSLRSCNITDFPEFIRKGRNLQILDLSNNKIKGQVPDWLWR--MPTLN 568

Query:   462 YLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKI 521
              ++LS+N L GF+      P +    ++DLS N  QGPL +P    +++  SNN+ TGKI
Sbjct:   569 SVDLSNNSLSGFHVSVKASPES-QLTSVDLSSNAFQGPLFLPSKSLRYFSGSNNNFTGKI 627

Query:   522 PFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSL 581
             P  IC  S SLEILDLS NNL+G LP CL+     LS LDL++N   GS+P+ F++   L
Sbjct:   628 PRSICGLS-SLEILDLSNNNLNGSLPWCLETLMSSLSDLDLRNNSLSGSLPEIFMNATKL 686

Query:   582 MMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHG 641
               +D+S N ++G++P SL  CSSL+ L++G+N+I+  FP  L +L++L VL+L SNK HG
Sbjct:   687 RSLDVSHNRMEGKLPGSLTGCSSLEVLNVGSNRINDMFPFELNSLQKLQVLVLHSNKFHG 746

Query:   642 MIREPN-TGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVV--NTSELRYMEGMIYPF 698
              +   +    GFP+L+IID+S+N F G LPS YF  W AM     N  E  Y++    P 
Sbjct:   747 TLHNVDGVWFGFPQLQIIDVSHNDFFGILPSDYFMNWTAMSSKKDNNIEPEYIQN---PS 803

Query:   699 ALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVL 758
                S  +LG Y  SL + +KG  M  ++V    T + LS N+  G+IP SI  LK L++L
Sbjct:   804 VYGS--SLGYYT-SLVLMSKGVSMEMERVLTIYTAIDLSGNQLHGKIPDSIGLLKELRIL 860

Query:   759 SLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIP 818
             ++++N   GHI S L NL  LESLD+S N  SG+IP +L  L+ L + NVS+N L G IP
Sbjct:   861 NMSSNGFTGHIPSSLANLKNLESLDISQNNISGEIPPELGTLSSLAWINVSHNQLVGSIP 920

Query:   819 QGNQFPTFDKTSFNGNLGLCGKPLPKECEN--DEAPTNED 856
             QG QF     +S+ GN GL G  L   C +  +  PT  +
Sbjct:   921 QGTQFQRQKCSSYEGNPGLNGPSLENVCGHIKESTPTQTE 960

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2087253 RLP39 "AT3G24900" [Arabidopsis thaliana (taxid:3702)]

 Score = 1126 (401.4 bits), Expect = 3.5e-114, P = 3.5e-114
 Identities = 292/783 (37%), Positives = 402/783 (51%)

Query:    76 DGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIIXX 135
             +GV C+ +TG V+KL L  +CL G + S+S LF+   L  L L++N F  S IP E    
Sbjct:    65 NGVWCDNSTGAVMKLRL-RACLSGTLKSNSSLFQFHQLRHLYLSYNNFTPSSIPSEFGML 123

Query:   136 XXXXXXXXXXAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKE 195
                        GF GQ+PS    LS L +L L HN     +     NL  L   + ++  
Sbjct:   124 NKLEVLFMSTGGFLGQVPSSFSNLSMLSALLLHHNELTGSLSFVR-NLRKLT--ILDVSH 180

Query:   196 LALGGVTISSPIPHXXXXXXXXXXXXXXGCE--LRGRIPSLLGNLTKLMYLDLSFNNLLG 253
                 G T++   P+              G        +P   GNL KL  LD+S N+  G
Sbjct:   181 NHFSG-TLN---PNSSLFELHNLAYLDLGSNNFTSSSLPYEFGNLNKLELLDVSSNSFFG 236

Query:   254 ELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRL 313
             ++P +I NL  L  L +  N+ +G LP  + NL  L  L LS N F G  P S+     L
Sbjct:   237 QVPPTISNLTQLTELYLPLNDFTGSLPL-VQNLTKLSILHLSDNHFSGTIPSSLFTMPFL 295

Query:   314 YWLSLASNDFSGELPASFGNLRS-LEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFS 372
              +L L  N+ SG +     +L S LE L++ E  F  +I   +  L  LK L  S  N S
Sbjct:   296 SYLDLGGNNLSGSIEVPNSSLSSRLENLNLGENHFEGKIIEPISKLINLKELHLSFLNTS 355

Query:   373 GPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFN-TSQKFNFVGLRSCNLNEFPNFLKNQ 431
              PI+L +F  + K+L  L LS   +S  + ++ +        + L+ CN++ FPN LK  
Sbjct:   356 YPINLKLFS-SLKYLLLLDLSGGWISQASLSLDSYIPSTLEALLLKHCNISVFPNILKTL 414

Query:   432 HYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDL 491
               LE + LS NKI GK+P+WL   S+   S + +  N   GF         N     L+L
Sbjct:   415 PNLEFIALSTNKISGKIPEWLW--SLPRLSSVFIEENLFTGFEGSSEILV-NSSVRILNL 471

Query:   492 SYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLD 551
               N L+G LP  P    ++   NN   G IP  IC S  SL  LDLSYNN +G +P C  
Sbjct:   472 LSNNLEGALPHLPLSVNYFSARNNRYGGDIPLSIC-SRRSLVFLDLSYNNFTGPIPPCPS 530

Query:   552 NFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLG 611
             NF     IL+L+ N   GSIP T+ +   L  +D+  N L G++PRSL+NCS+L+FL + 
Sbjct:   531 NFL----ILNLRKNNLEGSIPDTYYADAPLRSLDVGYNRLTGKLPRSLLNCSALQFLSVD 586

Query:   612 NNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGC-GFPELRIIDLSNNRFTGKLP 670
             +N I  TFP  L  L +L VLIL SN  +G +  PN G  GFPELRI++++ N+FTG LP
Sbjct:   587 HNGIKDTFPFSLKALPKLQVLILHSNNFYGPLSPPNQGSLGFPELRILEIAGNKFTGSLP 646

Query:   671 SKYFQCWNAMQV-VNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPN 729
               +F+ W A  + +N  +  YM      +    + +L   D    +  KG  M  ++V +
Sbjct:   647 PDFFENWKASSLTMNEDQGLYMVYNKVVYGTYYFTSLEAID----LQYKGLSMEQNRVLS 702

Query:   730 FLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKF 789
                 +  S NR +GEIP SI  LK L  L+L+NN+  GHI   L NL  +ESLDLS+N+ 
Sbjct:   703 SSATIDFSGNRLEGEIPESIGLLKALIALNLSNNAFTGHIPLSLANLKKIESLDLSSNQL 762

Query:   790 SGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLCGKPLPKECEND 849
             SG IP  +  L+FL + NVS+N L G IPQG Q     K+SF GN GLCG PL + C   
Sbjct:   763 SGTIPNGIGTLSFLAYMNVSHNQLNGEIPQGTQITGQPKSSFEGNAGLCGLPLQESCFGT 822

Query:   850 EAP 852
              AP
Sbjct:   823 NAP 825

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046357 RLP23 "receptor like protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 1125 (401.1 bits), Expect = 4.5e-114, P = 4.5e-114
 Identities = 291/766 (37%), Positives = 396/766 (51%)

Query:    96 CLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIIXXXXXXXXXXXXAGFFGQIPSE 155
             CL G + S+S LF    L ++DL  N    S +P                 GF GQ+PS 
Sbjct:    83 CLSGTLKSNSSLFGFHQLRYVDLQNNNLTSSSLPSGFGNLKRLEGLFLSSNGFLGQVPSS 142

Query:   156 ILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPI-PHXXXXX 214
                L+ L  LDLS    YN +    P    LV+ L  L  L L     S  + P+     
Sbjct:   143 FSNLTMLAQLDLS----YNKLTGSFP----LVRGLRKLIVLDLSYNHFSGTLNPNSSLFE 194

Query:   215 XXXXXXXXXGCE-LRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWN 273
                              +PS  GNL +L  L LS N   G++P++I NL  L +L +  N
Sbjct:   195 LHQLRYLNLAFNNFSSSLPSKFGNLHRLENLILSSNGFSGQVPSTISNLTRLTKLYLDQN 254

Query:   274 ELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGN 333
             +L+   P  + NL +L +L+LS N+F G  P S+     L  L+L  N+ +G +  S  +
Sbjct:   255 KLTSSFPL-VQNLTNLYELDLSYNKFFGVIPSSLLTLPFLAHLALRENNLAGSVEVSNSS 313

Query:   334 LRS-LEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSL 392
               S LE + +    F  QI   +  L  LK L+ S  N S PIDL +F  + K L  L L
Sbjct:   314 TSSRLEIMYLGSNHFEGQILEPISKLINLKHLDLSFLNTSYPIDLKLFS-SLKSLRSLDL 372

Query:   393 SSNRLSLFTKAIFNTSQ---KFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVP 449
             S N +S  + ++ + S        + LR C++NEFPN LK    L  +D+S N++ GK+P
Sbjct:   373 SGNSIS--SASLSSDSYIPLTLEMLTLRHCDINEFPNILKTLKELVYIDISNNRMKGKIP 430

Query:   450 KWLIE-PSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTK 508
             +WL   P +Q+   + L +N+  GF Q       N     L L  N  +G LP  P   K
Sbjct:   431 EWLWSLPLLQS---VTLGNNYFTGF-QGSAEILVNSSVLLLYLDSNNFEGALPDLPLSIK 486

Query:   509 HYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFC 568
              + V++NS T +IP  ICN S SL  +DLSYNN +G +P CL N    L ++ L++N   
Sbjct:   487 GFGVASNSFTSEIPLSICNRS-SLAAIDLSYNNFTGPIPPCLRN----LELVYLRNNNLE 541

Query:   569 GSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRE 628
             GSIP     G SL  +D+S N L G++PRS VNCSSLKFL + NN+I  TFP WL  L  
Sbjct:   542 GSIPDALCDGASLRTLDVSHNRLTGKLPRSFVNCSSLKFLSVINNRIEDTFPFWLKALPN 601

Query:   629 LNVLILKSNKLHGMIREPNTG-CGFPELRIIDLSNNRFTGKLPSKYFQCWNAM-QVVNTS 686
             L VL L+SN+ +G I  P+ G  GFPELRI ++S+N+FTG LP  YF  W A  + +N  
Sbjct:   602 LQVLTLRSNRFYGPISPPHQGPLGFPELRIFEISDNKFTGSLPPNYFVNWKASSRTMNQD 661

Query:   687 ELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIP 746
                YM   +Y   L      G  D +L +  KG  M   K       +  S NR +G+IP
Sbjct:   662 GGLYM---VYEEKLFDEGGYGYTD-ALDLQYKGLHMEQAKALTSYAAIDFSGNRLEGQIP 717

Query:   747 TSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFF 806
              SI  LK L  ++++NN+  GHI   + NL  LESLD+S N+ SG IP  L  ++FL + 
Sbjct:   718 ESIGLLKALIAVNISNNAFTGHIPLSMANLENLESLDMSRNQLSGTIPNGLGSISFLAYI 777

Query:   807 NVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLCGKPLPKECENDEAP 852
             NVS+N LTG IPQG Q     K+SF GN GLCG PL + C    AP
Sbjct:   778 NVSHNQLTGEIPQGTQITGQSKSSFEGNAGLCGLPLKESCFGTGAP 823

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2086974 RLP41 "AT3G25010" [Arabidopsis thaliana (taxid:3702)]

 Score = 1113 (396.9 bits), Expect = 8.4e-113, P = 8.4e-113
 Identities = 288/785 (36%), Positives = 405/785 (51%)

Query:    75 WDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIIX 134
             W+GV C+ +TG V K+    +CL G + S+S LF+   L  L L  N F  S I  +   
Sbjct:    63 WNGVWCDNSTGAVTKIQFM-ACLSGTLKSNSSLFQFHELRSLLLIHNNFTSSSISSKFGM 121

Query:   135 XXXXXXXXXXXAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLK 194
                        +GF GQ+P     LS L +LDLS N     +     NL  L  ++ ++ 
Sbjct:   122 LNKLEVLFLSSSGFLGQVPFSFSNLSMLSALDLSDNELTGSLSFVR-NLRKL--RVLDVS 178

Query:   195 ELALGGVTISSPIPHXXXXXXXXXXXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGE 254
                  G+   +P                        +P   GNL KL  LD+S N+  G+
Sbjct:   179 YNHFSGIL--NPNSSLFELHHLTYLSLGSNSFTSSTLPYEFGNLNKLELLDVSSNSFFGQ 236

Query:   255 LPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLY 314
             +P +I NL  L  L +  N+ +G LP  + NL  L  L L  N F G  P S+     L 
Sbjct:   237 VPPTISNLTQLTELYLPLNDFTGSLPL-VQNLTKLSILALFGNHFSGTIPSSLFTMPFLS 295

Query:   315 WLSLASNDFSG--ELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFS 372
             +LSL  N+ +G  E+P S  + R LE L + +  F  +I   +  L  LK L+ S  + S
Sbjct:   296 YLSLKGNNLNGSIEVPNSSSSSR-LESLYLGKNHFEGKILKPISKLINLKELDLSFLSTS 354

Query:   373 GPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFN-TSQKFNFVGLRSCNLNEFPNFLKNQ 431
              PIDL +F  +FK L  L L+ + +S    +  +  S     + ++ CN+++FPN LK+ 
Sbjct:   355 YPIDLSLFS-SFKSLLVLDLTGDWISQAGLSSDSYISLTLEALYMKQCNISDFPNILKSL 413

Query:   432 HYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDL 491
               LE +D+S N++ GK+P+WL   S+   S + +  N L GF         N     L L
Sbjct:   414 PNLECIDVSNNRVSGKIPEWLW--SLPRLSSVFIGDNLLTGFEGSSEILV-NSSVQILVL 470

Query:   492 SYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLD 551
               N L+G LP  P    ++    N   G IP  ICN S SL++LDL YNN +G +P CL 
Sbjct:   471 DSNSLEGALPHLPLSIIYFSARYNRFKGDIPLSICNRS-SLDVLDLRYNNFTGPIPPCLS 529

Query:   552 NFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLG 611
             N    L  L+L+ N   GSIP T+ +   L  +D+  N L G++PRSL+NCS+L+FL + 
Sbjct:   530 N----LLFLNLRKNNLEGSIPDTYFADAPLRSLDVGYNRLTGKLPRSLLNCSALQFLSVD 585

Query:   612 NNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGC-GFPELRIIDLSNNRFTGKLP 670
             +N I  TFP +L  L +L VL+L SNK +G +  PN G  GFPELRI++++ N+ TG LP
Sbjct:   586 HNGIEDTFPFYLKVLPKLQVLLLSSNKFYGPLSPPNQGSLGFPELRILEIAGNKLTGSLP 645

Query:   671 SKYFQCWNAMQV-VNTSELRYM--EGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKV 727
               +F  W A  + +N  +  YM    ++Y    +SY A      ++ +  KG  M    V
Sbjct:   646 QDFFVNWKASSLTMNEDQGLYMVYSKVVYGIYYLSYLA------TIDLQYKGLSMEQKWV 699

Query:   728 PNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNN 787
                   + LS NR +GEIP SI  LK L  L+L+NN+  GHI   L NL  +ESLDLS+N
Sbjct:   700 LTSSATIDLSGNRLEGEIPESIGLLKALIALNLSNNAFTGHIPLSLANLVKIESLDLSSN 759

Query:   788 KFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLCGKPLPKECE 847
             + SG IP  L  L+FL + NVS+N L G IPQG Q     K+SF GN GLCG PL + C 
Sbjct:   760 QLSGTIPNGLGTLSFLAYVNVSHNQLNGEIPQGTQITGQPKSSFEGNAGLCGLPLQQRCF 819

Query:   848 NDEAP 852
                AP
Sbjct:   820 GTNAP 824

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 1106 (394.4 bits), Expect = 4.6e-112, P = 4.6e-112
 Identities = 309/873 (35%), Positives = 438/873 (50%)

Query:    25 LCHSYERSALLQFKESLTIIRKTSSYYIW------DPCHPKTASWKPEEANIDCCLWDGV 78
             LC   +R ALL+ K    I + +S+ Y +       P HP T SW+    N DCC W+G+
Sbjct:    37 LCLPEQRDALLELKNEFEIGKPSSNDYCYRNNSRVSP-HPTTESWRN---NSDCCNWEGI 92

Query:    79 ECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIIXXXXX 138
              C+  +G VI+LDLS S L G  +S+S LF+L +L  LDL  N  +  EIP  I      
Sbjct:    93 TCDTKSGEVIELDLSCSWLYGSFHSNSSLFRLQNLRVLDLTQND-LDGEIPSSIGNLSHL 151

Query:   139 XXXXXXXAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNL------------ 186
                      F G IPS I  LS L SL LS N +   I     NL +L            
Sbjct:   152 TSLHLSYNQFLGLIPSSIENLSRLTSLHLSSNQFSGQIPSSIGNLSHLTSLELSSNQFSG 211

Query:   187 -----VKKLTNLKELALGGVTISSPIPHXXXXXXXXXXXXXXGCELRGRIPSLLGNLTKL 241
                  +  L+NL  L+L        IP                    G IPS  GNL +L
Sbjct:   212 QIPSSIGNLSNLTFLSLPSNDFFGQIPSSIGNLARLTYLYLSYNNFVGEIPSSFGNLNQL 271

Query:   242 MYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRG 301
             + L +  N L G +P S+ NL  L  L +S N+ +G +P +I  L++L   E S N F G
Sbjct:   272 IVLQVDSNKLSGNVPISLLNLTRLSALLLSHNQFTGTIPNNISLLSNLMDFEASNNAFTG 331

Query:   302 KTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRS---LEGLDISECKFSSQIPSSLRNL 358
               P S+ N   L  L L+ N  +G L   FGN+ S   L+ L I    F   IP SL   
Sbjct:   332 TLPSSLFNIPPLIRLDLSDNQLNGTL--HFGNISSPSNLQYLIIGSNNFIGTIPRSLSRF 389

Query:   359 AQLKFLEFSH-NNFSGPIDLDMFLVNFKHLEHLSLS---SNRLSLFT-KAIFNTSQKFNF 413
               L   + SH N    P+D  +F  + K L+ L LS   +  + L      F T +  + 
Sbjct:   390 VNLTLFDLSHLNTQCRPVDFSIFS-HLKSLDDLRLSYLTTTTIDLNDILPYFKTLRSLDI 448

Query:   414 VG--LRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLI 471
              G  + + N +   +   +Q  ++ L LS   I    P+ L   +     +L++S+N + 
Sbjct:   449 SGNLVSATNKSSVSSDPPSQS-IQSLYLSGCGITD-FPEIL--RTQHELGFLDVSNNKIK 504

Query:   472 G-----FYQHPMFFPRNYDGFTLDLSY---NYLQGPLPVPPPQTKHYLVSNNSLTGKIPF 523
             G      +  P  F  N    T  +S+   +   G   V  P   H   SNN+ TGKIP 
Sbjct:   505 GQVPGWLWTLPNLFYLNLSNNTF-ISFESSSKKHGLSSVRKPSMIHLFASNNNFTGKIPS 563

Query:   524 WICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMM 583
             +IC    SL  LDLS NN +G +P+C++     L +L+L+ N   G +P+      SL  
Sbjct:   564 FICGL-RSLNTLDLSENNYNGSIPRCMEKLKSTLFVLNLRQNNLSGGLPKHIFE--SLRS 620

Query:   584 IDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMI 643
             +D+  NLL G++PRSL+  S+L+ L++ +N+I+ TFP WL +L +L VL+L+SN  HG I
Sbjct:   621 LDVGHNLLVGKLPRSLIRFSNLEVLNVESNRINDTFPFWLSSLSKLQVLVLRSNAFHGPI 680

Query:   644 REPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSY 703
              E      FPELRIID+S+N F G LP++YF  W+AM  +  +E +  E          Y
Sbjct:   681 HEAT----FPELRIIDISHNHFNGTLPTEYFVKWSAMSSLGKNEDQSNE---------KY 727

Query:   704 AALGIY-DYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLAN 762
                G+Y   S+ + NKG  M   ++    T +  S N+F+GEIP SI  LK L VL+L+N
Sbjct:   728 MGSGLYYQDSMVLMNKGLAMELVRILTIYTALDFSGNKFEGEIPKSIGLLKELLVLNLSN 787

Query:   763 NSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQ 822
             N+  GHI S +GNLT LESLD+S NK +G+IPQ+L DL+FL + N S+N L G +P G Q
Sbjct:   788 NAFGGHIPSSMGNLTALESLDVSQNKLTGEIPQELGDLSFLAYMNFSHNQLAGLVPGGTQ 847

Query:   823 FPTFDKTSFNGNLGLCGKPLPKECENDEAPTNE 855
             F   + ++F  NLGL G  L + C +   P ++
Sbjct:   848 FRRQNCSAFENNLGLFGPSLDEVCRDKHTPASQ 880

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 1088 (388.1 bits), Expect = 3.8e-110, P = 3.8e-110
 Identities = 264/680 (38%), Positives = 385/680 (56%)

Query:   180 EPNLGNLVKKLTNLKELALGGVTISSPIPHXXXXXXXXXXXXXXGCELRGRIPSLLGNLT 239
             E +L N ++  + LK L++   + S  IP+                   GRIPS L +L+
Sbjct:   268 EGSLPNFLRNNSLLK-LSIYNTSFSGTIPNSISNLKHLTSLKLQQSAFSGRIPSSLRSLS 326

Query:   240 KLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRF 299
              L  L LS NN +GE+P+S+ NL  L   D+S N L+G  P+S+ NL  L  +++  N F
Sbjct:   327 HLSNLVLSENNFVGEIPSSVSNLKQLTLFDVSDNNLNGNFPSSLLNLNQLRYIDICSNHF 386

Query:   300 RGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLA 359
              G  P ++   + L + S   N F+G +P+S  N+ SL  L +S  + +    ++++N++
Sbjct:   387 TGFLPPTISQLSNLEFFSACDNSFTGSIPSSLFNISSLTTLGLSYNQLNDT--TNIKNIS 444

Query:   360 QLKFLE---FSHNNF-SGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNT--SQKFNF 413
              L  L+     +NNF +  +DLD+FL + K L  L+LS   LS  T    ++  S    +
Sbjct:   445 LLHNLQRLLLDNNNFKASQVDLDVFL-SLKRLVSLALSGIPLST-TNITSDSEFSSHLEY 502

Query:   414 VGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGF 473
             + L  CN+ EFP F++NQ  L  +DLS N I G+VP WL    +   S ++LS+N LIGF
Sbjct:   503 LELSGCNIIEFPEFIRNQRNLSSIDLSNNNIKGQVPNWLWR--LPELSTVDLSNNSLIGF 560

Query:   474 YQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLE 533
                 +          LDLS N  QGPL +PP   +++L S N+ TG IP  IC  +N L 
Sbjct:   561 -NGSLKALSGSKIVMLDLSSNAFQGPLFMPPRGIQYFLGSYNNFTGYIPPSICGLANPL- 618

Query:   534 ILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQG 593
             ILDLS NNL GL+P+CL+     LS+L+L++N   GS+P  F++ + L  +D+S N L+G
Sbjct:   619 ILDLSNNNLHGLIPRCLEAQMSSLSVLNLRNNSLDGSLPNIFMNAKVLSSLDVSHNTLEG 678

Query:   594 RIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPN-TGCGF 652
             ++P SL  CS+L+ L++ +N I+ TFP WL +L +L VL+L+SN   G +   +    GF
Sbjct:   679 KLPASLAGCSALEILNVESNNINDTFPFWLNSLPKLQVLVLRSNNFRGTLHNVDGVWFGF 738

Query:   653 PELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYS 712
             P LRI D+S+N F G LPS YF  W A+    T EL+Y+     P     Y   G Y  S
Sbjct:   739 PLLRITDVSHNDFVGTLPSDYFMNWTAISKSET-ELQYIGD---P---EDY---GYYT-S 787

Query:   713 LTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSC 772
             L + NKG  M   ++    T +  + N+  G+IP S+  LK L VL+L++N+  GHI S 
Sbjct:   788 LVLMNKGVSMEMQRILTKYTVIDFAGNKIQGKIPESVGILKELHVLNLSSNAFTGHIPSS 847

Query:   773 LGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFN 832
             L NLT LESLD+S NK  G+IP +L  L+ LE+ NVS+N L G IPQG QF   + +S+ 
Sbjct:   848 LANLTNLESLDISQNKIGGEIPPELGTLSSLEWINVSHNQLVGSIPQGTQFHRQNCSSYE 907

Query:   833 GNLGLCGKPLPKECENDEAP 852
             GN G+ G  L   C +  AP
Sbjct:   908 GNPGIYGSSLKDVCGDIHAP 927

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 1082 (385.9 bits), Expect = 1.6e-109, P = 1.6e-109
 Identities = 253/647 (39%), Positives = 364/647 (56%)

Query:   227 LRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNL 286
             L G +P  +GNL +L  L L   NL G++P+S+GNL  L  LD+S+N+ + E P S+GNL
Sbjct:    62 LSGILPDSIGNLKRLKVLVLVNCNLFGKIPSSLGNLSYLTHLDLSYNDFTSEGPDSMGNL 121

Query:   287 ASLEQLELSL----------NRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRS 336
               L  + L L          N+ +G  P +M + ++L    ++ N FSG +P+S   + S
Sbjct:   122 NRLTDMLLKLSSVTWIDLGDNQLKGMLPSNMSSLSKLEAFDISGNSFSGTIPSSLFMIPS 181

Query:   337 LEGLDISECKFSSQIP-SSLRNLAQLKFLEFSHNNFSGPI-DLDMFLVNFKHLEHLSLSS 394
             L  L +    FS      ++ + + L+ L    NNF+  I DL +F      L +L +S 
Sbjct:   182 LILLHLGRNDFSGPFEIGNISSPSNLQLLNIGRNNFNPDIVDLSIFSPLLS-LGYLDVSG 240

Query:   395 NRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIE 454
               L +   +  +      ++GL SCN++EFP FL+NQ  LE LD+S N+I G+VP+WL  
Sbjct:   241 INLKI--SSTVSLPSPIEYLGLLSCNISEFPKFLRNQTSLEYLDISANQIEGQVPEWLW- 297

Query:   455 PSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVS- 513
              S+    Y+N+SHN   GF           +   LD+S N  Q P P+ P  + +YL S 
Sbjct:   298 -SLPELRYVNISHNSFNGFEGPADVIQGGRELLVLDISSNIFQDPFPLLPVVSMNYLFSS 356

Query:   514 NNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQ 573
             NN  +G+IP  IC   N L IL LS NN SG +P+C +N   HL +L L++N   G  P+
Sbjct:   357 NNRFSGEIPKTICELDN-LRILVLSNNNFSGSIPRCFENL--HLYVLHLRNNNLSGIFPE 413

Query:   574 TFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLI 633
               +S   L   D+  NL  G +P+SL+NCS ++FL++ +N+I+ TFPSWL  L  L +L+
Sbjct:   414 EAIS-HHLQSFDVGHNLFSGELPKSLINCSDIEFLNVEDNRINDTFPSWLELLPNLQILV 472

Query:   634 LKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEG 693
             L+SN+ +G I  P     F  LRI D+S NRFTG LPS YF  W+ M     S +  ++G
Sbjct:   473 LRSNEFYGPIFSPGDSLSFSRLRIFDISENRFTGVLPSDYFVGWSVM-----SSVVDIDG 527

Query:   694 MIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLT---GVILSSNRFDGEIPTSIA 750
              I  + +        Y  S+ + NKG  M  + V +  T    + +S NR +G+IP SI 
Sbjct:   528 RIIQYTVTGIDR-DFYHKSVALINKGLKM--ELVGSGFTIYKTIDVSGNRLEGDIPESIG 584

Query:   751 NLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSN 810
              LK + VLS++NN+  GHI   L NL+ L+SLDLS N+ SG IP +L  LTFLE+ N S+
Sbjct:   585 LLKEVIVLSMSNNAFTGHIPPSLSNLSNLQSLDLSQNRLSGSIPGELGKLTFLEWMNFSH 644

Query:   811 NNLTGPIPQGNQFPTFDKTSFNGNLGLCGKPLPKECENDEAPTNEDQ 857
             N L GPIP+  Q  T D +SF  N GLCG PL K+C  +E  T ++Q
Sbjct:   645 NRLEGPIPETTQIQTQDSSSFTENPGLCGAPLLKKCGGEEEATKQEQ 691

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2829370 RLP40 "receptor like protein 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 1073 (382.8 bits), Expect = 1.5e-108, P = 1.5e-108
 Identities = 284/783 (36%), Positives = 391/783 (49%)

Query:    75 WDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIIX 134
             W+GV C+++TG V  L L  +CL G +  +S LF+  HL  L L  N F  S I  +   
Sbjct:    94 WNGVWCDDSTGAVTMLQL-RACLSGTLKPNSSLFQFHHLRSLLLPHNNFTSSSISSKFGM 152

Query:   135 XXXXXXXXXXXAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLK 194
                        +GF  Q+P     LS L +L LS+N     +     NL  L  ++ ++ 
Sbjct:   153 LNNLEVLSLSSSGFLAQVPFSFSNLSMLSALVLSNNDLTGSLSFAR-NLRKL--RVLDVS 209

Query:   195 ELALGGVTISSPIPHXXXXXXXXXXXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGE 254
                  G+   +P                        +P   GNL KL  LD+S N+  G+
Sbjct:   210 YNHFSGIL--NPNSSLFELHHIIYLNLRYNNFTSSSLPYEFGNLNKLEVLDVSSNSFFGQ 267

Query:   255 LPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLY 314
             +P +I NL  L  L +  N  +G LP  + NL  L  L L  N F G  P S+     L 
Sbjct:   268 VPPTISNLTQLTELYLPLNHFTGSLPL-VQNLTKLSILHLFGNHFSGTIPSSLFTMPFLS 326

Query:   315 WLSLASNDFSG--ELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFS 372
             +LSL  N+ +G  E+P S  + R LE L + E  F  +I   +  L  LK L+ S  N S
Sbjct:   327 YLSLKGNNLNGSIEVPNSSSSSR-LESLHLGENHFEGKILEPISKLINLKELDLSFLNTS 385

Query:   373 GPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFN-TSQKFNFVGLRSCNLNEFPNFLKNQ 431
              PIDL +F  + K L  L LS + +S  +  + +        + L  C++++FPN  K  
Sbjct:   386 YPIDLSLFS-SLKSLLLLDLSGDWISKASLTLDSYIPSTLEVLRLEHCDISDFPNVFKTL 444

Query:   432 HYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDL 491
             H LE + LS N+I GK P+WL   S+   S + ++ N L GF         N     L L
Sbjct:   445 HNLEYIALSNNRISGKFPEWLW--SLPRLSSVFITDNLLTGFEGSSEVLV-NSSVQILSL 501

Query:   492 SYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLD 551
               N L+G LP  P    ++   +N   G IP  ICN S SL++LDLSYNN +G +P CL 
Sbjct:   502 DTNSLEGALPHLPLSINYFSAIDNRFGGDIPLSICNRS-SLDVLDLSYNNFTGPIPPCLS 560

Query:   552 NFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLG 611
             N    L  L L+ N   GSIP  +     L  +D+  N L G++PRSL+NCS+L+FL + 
Sbjct:   561 N----LLYLKLRKNNLEGSIPDKYYEDTPLRSLDVGYNRLTGKLPRSLINCSALQFLSVD 616

Query:   612 NNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTG-CGFPELRIIDLSNNRFTGK-L 669
             +N I  TFP  L  L +L VL+L SNK +G +  PN G  GFPELRI++++ N+ TG  L
Sbjct:   617 HNGIKDTFPFSLKALPKLQVLLLSSNKFYGPLSPPNEGPLGFPELRILEIAGNKLTGSFL 676

Query:   670 PSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPN 729
              S +F  W A       +L     M+Y   +     L  Y+ ++ +  KG  M    V  
Sbjct:   677 SSDFFVNWKASSHTMNEDLGLY--MVYGKVIFGNYHLTYYE-TIDLRYKGLSMEQRNVLT 733

Query:   730 FLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKF 789
                 +  S NR +GEIP SI  LK L  L+L+NN+  GHI     NL  +ESLDLS+N+ 
Sbjct:   734 SSATIDFSGNRLEGEIPESIGLLKALIALNLSNNAFTGHIPLSFANLKKMESLDLSSNQL 793

Query:   790 SGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLCGKPLPKECEND 849
             SG IP  L  L+FL + NVS+N L G IPQG Q     K+SF GN GLCG PL + C   
Sbjct:   794 SGTIPNGLRTLSFLAYVNVSHNQLIGEIPQGTQITGQPKSSFEGNAGLCGFPLQESCFGT 853

Query:   850 EAP 852
               P
Sbjct:   854 NTP 856

GO:0009507 "chloroplast" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 1071 (382.1 bits), Expect = 2.4e-108, P = 2.4e-108
 Identities = 260/632 (41%), Positives = 343/632 (54%)

Query:   231 IPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLE 290
             +PS  GNL +L  L LS N  LG++P+S  NL  L  LD+S NEL+G  P  + NL  L 
Sbjct:   114 LPSGFGNLNRLEVLYLSSNGFLGQVPSSFSNLSQLNILDLSHNELTGSFPF-VQNLTKLS 172

Query:   291 QLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRS-LEGLDISECKFSS 349
              L LS N F G  P S+     L  L L  N  +G + A   +  S LE + +    F  
Sbjct:   173 ILVLSYNHFSGTIPSSLLTLPFLSSLDLRENYLTGSIEAPNSSTSSRLEFMYLGNNHFEG 232

Query:   350 QIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQ 409
             QI   +  L  LK L+ S    S PIDL++F  +FK L  L LS N L L T    ++  
Sbjct:   233 QILEPISKLINLKHLDLSFLKTSYPIDLNLFS-SFKSLVRLVLSGNSL-LATSITSDSKI 290

Query:   410 KFNFVGL--RSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSH 467
               N   L   SC L EFP  LKN   LE +DLS NKI GKVP+W    ++     +NL +
Sbjct:   291 PLNLENLVLLSCGLIEFPTILKNLTKLEHIDLSNNKIKGKVPEWFW--NLPRLRRVNLFN 348

Query:   468 NFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICN 527
             N              N     LDL+YN+ +GP P PP         NNS TG IP   CN
Sbjct:   349 NLFTDLEGSEEVLV-NSSVRLLDLAYNHFRGPFPKPPLSINLLSAWNNSFTGNIPLETCN 407

Query:   528 SSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLS 587
              S SL ILDLSYNNL+G +P+CL +F + L +++L+ N   GS+P  F  G  L  +D+ 
Sbjct:   408 RS-SLAILDLSYNNLTGPIPRCLSDFQESLIVVNLRKNNLEGSLPDIFSDGALLRTLDVG 466

Query:   588 DNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPN 647
              N L G++PRSL+NCS L+F+ + +N+I  TFP WL  L +L  L L+SNK HG I  P+
Sbjct:   467 YNQLTGKLPRSLLNCSMLRFVSVDHNKIKDTFPFWLKALPDLQALTLRSNKFHGPISPPD 526

Query:   648 TG-CGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELR-YMEGMIYPFALVSYAA 705
              G   FP+LRI+++S+N FTG LP  YF  W A  +    + R YM     P+    Y  
Sbjct:   527 RGPLAFPKLRILEISDNNFTGSLPPNYFVNWEASSLQMNEDGRIYMGDYNNPY----Y-- 580

Query:   706 LGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSL 765
               IY+ ++ +  KG  M   KV      +  S N+ +G+IP SI  LK L  L+L+NN+ 
Sbjct:   581 --IYEDTVDLQYKGLFMEQGKVLTSYATIDFSGNKLEGQIPESIGLLKALIALNLSNNAF 638

Query:   766 HGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPT 825
              GHI   L N+T LESLDLS N+ SG IP  L  L+FL + +V++N L G IPQG Q   
Sbjct:   639 TGHIPLSLANVTELESLDLSRNQLSGTIPNGLKTLSFLAYISVAHNQLIGEIPQGTQITG 698

Query:   826 FDKTSFNGNLGLCGKPLPKECENDEAPTNEDQ 857
               K+SF GN GLCG PL   C     P  +++
Sbjct:   699 QSKSSFEGNAGLCGLPLQGSCFAPPTPQPKEE 730

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 1059 (377.8 bits), Expect = 4.4e-107, P = 4.4e-107
 Identities = 300/861 (34%), Positives = 443/861 (51%)

Query:    25 LCHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCLWDGVECNENT 84
             LC   +R ALL+FK   +I    S   +       TA W+    N DCC W G+ C+  T
Sbjct:    25 LCLPDQRDALLEFKNEFSIPSPDSDLML---ILQTTAKWRN---NTDCCSWGGISCDPKT 78

Query:    85 GHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIIXXXXXXXXXXX 144
             G V++LDL NS L G + S+S LF+L HL+ LDL++N   C+ +P               
Sbjct:    79 GVVVELDLGNSDLNGRLRSNSSLFRLQHLQSLDLSYNDLSCT-LPDSSGNFKYLRVLNLL 137

Query:   145 XAGFFGQIPSEILELSNLVSLDLSHNSYYNLI-ELKEPNLGNLVKKLTNLKELALGGVTI 203
                 FG+IP+ +  LS L  LDLS+N   +L  E+ + ++GNL     +L+ L+L     
Sbjct:   138 GCNLFGEIPTSLRSLSYLTDLDLSYND--DLTGEILD-SMGNL----KHLRVLSLTSCKF 190

Query:   204 SSPIPHXXXXXXXXXXXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLD 263
             +  IP                    G +P  +GNL  L  L+L   N  G++PTS+G+L 
Sbjct:   191 TGKIPSSLGNLTYLTDLDLSWNYFTGELPDSMGNLKSLRVLNLHRCNFFGKIPTSLGSLS 250

Query:   264 CLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDF 323
              L  LDIS NE + E P S+ +L  L   +L L            N + L  + L+SN F
Sbjct:   251 NLTDLDISKNEFTSEGPDSMSSLNRLTDFQLMLL-----------NLSSLTNVDLSSNQF 299

Query:   324 SGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDL------ 377
                LP++  +L  LE  DIS   FS  IPSSL  L  L  L+   N+FSGP+ +      
Sbjct:   300 KAMLPSNMSSLSKLEAFDISGNSFSGTIPSSLFMLPSLIKLDLGTNDFSGPLKIGNISSP 359

Query:   378 ----DMFL----VNF----KHLEHLSLSSNRLSLF-TKAIFNTSQKFNFVGLRSCNLNEF 424
                 ++++    +N       L+ + LS+  LS + T  I + S       LRS +L+  
Sbjct:   360 SNLQELYIGENNINGPIPRSILKLVGLSALSLSFWDTGGIVDFSIFLQLKSLRSLDLSGI 419

Query:   425 PNFLKNQHYL--EVLDL---SCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMF 479
                + + H+L   ++ L   SCN    + PK+L   +  +  +L++S N + G  Q P +
Sbjct:   420 NLNISSSHHLPSHMMHLILSSCNI--SQFPKFL--ENQTSLYHLDISANQIEG--QVPEW 473

Query:   480 FPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSY 539
               R      ++++ N   G L + P     ++ S+N  +G+IP  +C     +  L LS 
Sbjct:   474 LWRLPTLRYVNIAQNAFSGELTMLPNPIYSFIASDNKFSGEIPRAVCE----IGTLVLSN 529

Query:   540 NNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSL 599
             NN SG +P C +  +  LSIL L++N   G IP+  L G  L  +D+  N L G+ P+SL
Sbjct:   530 NNFSGSIPPCFEISNKTLSILHLRNNSLSGVIPEESLHGY-LRSLDVGSNRLSGQFPKSL 588

Query:   600 VNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIID 659
             +NCS L+FL++  N+I+ TFPSWL +L  L +L+L+SN+ HG I  P     F +LR  D
Sbjct:   589 INCSYLQFLNVEENRINDTFPSWLKSLPNLQLLVLRSNEFHGPIFSPGDSLSFSKLRFFD 648

Query:   660 LSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYP-FALVSYAALGIYDYSLTMSNK 718
             +S NRF+G LPS YF  W+ M    +S +  ++    P F +V       +  S+ ++ K
Sbjct:   649 ISENRFSGVLPSDYFVGWSVM----SSFVDIIDNT--PGFTVVGDDQESFHK-SVVLTIK 701

Query:   719 GQMMSY--DKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNL 776
             G  M         + T + +S NR +G+IP SI  LK L VL+++NN+  GHI   L NL
Sbjct:   702 GLNMELVGSGFEIYKT-IDVSGNRLEGDIPESIGILKELIVLNMSNNAFTGHIPPSLSNL 760

Query:   777 TGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLG 836
             + L+SLDLS N+ SG IP +L +LTFL   N S N L GPIPQG Q  + + +SF  N G
Sbjct:   761 SNLQSLDLSQNRLSGSIPGELGELTFLARMNFSYNMLEGPIPQGTQIQSQNSSSFAENPG 820

Query:   837 LCGKPLPKECENDEAPTNEDQ 857
             LCG PL K+C  +E    E +
Sbjct:   821 LCGAPLQKKCGGEEEEDKEKE 841

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029123001 SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (983 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	922
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-77
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-62
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-23
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-19
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-13
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-07
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-06
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	6e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  272 bits (696), Expect = 2e-77
 Identities = 218/675 (32%), Positives = 328/675 (48%), Gaps = 101/675 (14%)

Query: 1   MQFVFSLIFFNFTISNFTSSMLSPLCHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKT 60
           + F+   +F NF++            H+ E   LL FK S+            DP     
Sbjct: 12  LIFMLFFLFLNFSML-----------HAEELELLLSFKSSIN-----------DPLK-YL 48

Query: 61  ASWKPEEANIDCCLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAF 120
           ++W     + D CLW G+ CN N+  V+ +DLS   + G I  SS +F+L +++ ++L+ 
Sbjct: 49  SNWNS---SADVCLWQGITCN-NSSRVVSIDLSGKNISGKI--SSAIFRLPYIQTINLSN 102

Query: 121 NYFICSEIPPEIINLS-RLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELK 179
           N  +   IP +I   S  L YLNLS+  F G IP     + NL +LDLS+N     I   
Sbjct: 103 NQ-LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG--SIPNLETLDLSNNMLSGEIP-- 157

Query: 180 EPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLT 239
                N +   ++LK L LGG  +   IP+SL NL+SL  L+L+  +L G+IP  LG + 
Sbjct: 158 -----NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK 212

Query: 240 KLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRF 299
            L ++ L +NNL GE+P  IG L  L  LD+ +N L+G +P+S+GNL +L+ L L  N+ 
Sbjct: 213 SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272

Query: 300 RGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLA 359
            G  P S+ +  +L  L L+ N  SGE+P     L++LE L +    F+ +IP +L +L 
Sbjct: 273 SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLP 332

Query: 360 QLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSC 419
           +L+ L+   N FSG I  ++   N  +L  L LS+N L+                     
Sbjct: 333 RLQVLQLWSNKFSGEIPKNLGKHN--NLTVLDLSTNNLT--------------------- 369

Query: 420 NLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMF 479
              E P  L +   L  L L  N + G++PK L   + ++   + L  N           
Sbjct: 370 --GEIPEGLCSSGNLFKLILFSNSLEGEIPKSL--GACRSLRRVRLQDN----------- 414

Query: 480 FPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYL-VSNNSLTGKI--PFWICNSSNSLEILD 536
                  F+ +L   + + PL        ++L +SNN+L G+I    W      SL++L 
Sbjct: 415 ------SFSGELPSEFTKLPL-------VYFLDISNNNLQGRINSRKW---DMPSLQMLS 458

Query: 537 LSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIP 596
           L+ N   G LP      S  L  LDL  N+F G++P+   S   LM + LS+N L G IP
Sbjct: 459 LARNKFFGGLPDSFG--SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP 516

Query: 597 RSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELR 656
             L +C  L  LDL +NQ+SG  P+    +  L+ L L  N+L G I   N G     L 
Sbjct: 517 DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI-PKNLG-NVESLV 574

Query: 657 IIDLSNNRFTGKLPS 671
            +++S+N   G LPS
Sbjct: 575 QVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  228 bits (582), Expect = 2e-62
 Identities = 186/632 (29%), Positives = 290/632 (45%), Gaps = 94/632 (14%)

Query: 213 NLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNL-DCLKRLDIS 271
           N S +  + LSG  + G+I S +  L  +  ++LS N L G +P  I      L+ L++S
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 272 WNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASF 331
            N  +G +P   G++ +LE L+LS N   G+ P+ +G+F+ L  L L  N   G++P S 
Sbjct: 127 NNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184

Query: 332 GNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLS 391
            NL SLE L ++  +   QIP  L  +  LK++   +NN SG I  +  +     L HL 
Sbjct: 185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE--IGGLTSLNHLD 242

Query: 392 LSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKW 451
           L  N L+                          P+ L N   L+ L L  NK+ G +P  
Sbjct: 243 LVYNNLT-----------------------GPIPSSLGNLKNLQYLFLYQNKLSGPIPPS 279

Query: 452 LIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKH-- 509
           +       FS   L                      +LDLS N L G +P    Q ++  
Sbjct: 280 I-------FSLQKL---------------------ISLDLSDNSLSGEIPELVIQLQNLE 311

Query: 510 --YLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKF 567
             +L SNN  TGKIP  +  S   L++L L  N  SG +P+ L    ++L++LDL  N  
Sbjct: 312 ILHLFSNN-FTGKIPVALT-SLPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLDLSTNNL 368

Query: 568 CGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLR 627
            G IP+   S  +L  + L  N L+G IP+SL  C SL+ + L +N  SG  PS    L 
Sbjct: 369 TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP 428

Query: 628 ELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSE 687
            +  L + +N L G I   +     P L+++ L+ N+F G LP  +      ++ ++ S 
Sbjct: 429 LVYFLDISNNNLQGRIN--SRKWDMPSLQMLSLARNKFFGGLPDSFGS--KRLENLDLSR 484

Query: 688 LRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPT 747
            ++  G +                   + +  ++M             LS N+  GEIP 
Sbjct: 485 NQF-SGAV----------------PRKLGSLSELMQLK----------LSENKLSGEIPD 517

Query: 748 SIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFN 807
            +++ K L  L L++N L G I +    +  L  LDLS N+ SG+IP+ L ++  L   N
Sbjct: 518 ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN 577

Query: 808 VSNNNLTGPIPQGNQFPTFDKTSFNGNLGLCG 839
           +S+N+L G +P    F   + ++  GN+ LCG
Sbjct: 578 ISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  104 bits (262), Expect = 8e-23
 Identities = 80/245 (32%), Positives = 125/245 (51%), Gaps = 19/245 (7%)

Query: 90  LDLSNSCLQGFIN----SSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSS 145
           LDLS + L G I     SS  LFKL+        F+  +  EIP  +     L  + L  
Sbjct: 361 LDLSTNNLTGEIPEGLCSSGNLFKLI-------LFSNSLEGEIPKSLGACRSLRRVRLQD 413

Query: 146 AGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISS 205
             F G++PSE  +L  +  LD+S+N+    I  ++         + +L+ L+L       
Sbjct: 414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK-------WDMPSLQMLSLARNKFFG 466

Query: 206 PIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCL 265
            +P S  +   L  L LS  +  G +P  LG+L++LM L LS N L GE+P  + +   L
Sbjct: 467 GLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL 525

Query: 266 KRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSG 325
             LD+S N+LSG++PAS   +  L QL+LS N+  G+ P ++GN   L  ++++ N   G
Sbjct: 526 VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585

Query: 326 ELPAS 330
            LP++
Sbjct: 586 SLPST 590

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 92.6 bits (230), Expect = 3e-19
 Identities = 62/192 (32%), Positives = 93/192 (48%), Gaps = 34/192 (17%)

Query: 730 FLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKF 789
           F+ G+ L +    G IP  I+ L+ LQ ++L+ NS+ G+I   LG++T LE LDLS N F
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 790 SGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFN--GNLGLCGKPLPKECE 847
           +G IP+ L  LT L   N++ N+L+G +P         + SFN   N GLCG P  + C 
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC- 537

Query: 848 NDEAPTNEDQVEGSEESLLSGTSDWKIILIGYAGGLIVGVVLGLNFSIGILEWFSKKFGM 907
                       G   S+ +         IG A G+ V  +  +  ++    W+      
Sbjct: 538 ------------GPHLSVGAK--------IGIAFGVSVAFLFLVICAMC---WW------ 568

Query: 908 QPKRRRRIRRAR 919
             KRR+ I RA+
Sbjct: 569 --KRRQNILRAQ 578

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 79.1 bits (195), Expect = 5e-15
 Identities = 34/89 (38%), Positives = 54/89 (60%)

Query: 220 LSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGEL 279
           L L    LRG IP+ +  L  L  ++LS N++ G +P S+G++  L+ LD+S+N  +G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 280 PASIGNLASLEQLELSLNRFRGKTPHSMG 308
           P S+G L SL  L L+ N   G+ P ++G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 77.5 bits (191), Expect = 2e-14
 Identities = 36/89 (40%), Positives = 51/89 (57%)

Query: 244 LDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKT 303
           L L    L G +P  I  L  L+ +++S N + G +P S+G++ SLE L+LS N F G  
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 304 PHSMGNFTRLYWLSLASNDFSGELPASFG 332
           P S+G  T L  L+L  N  SG +PA+ G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 73.7 bits (181), Expect = 2e-13
 Identities = 34/78 (43%), Positives = 53/78 (67%)

Query: 207 IPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLK 266
           IP+ ++ L  L  ++LSG  +RG IP  LG++T L  LDLS+N+  G +P S+G L  L+
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 267 RLDISWNELSGELPASIG 284
            L+++ N LSG +PA++G
Sbjct: 494 ILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 64.2 bits (156), Expect = 1e-10
 Identities = 81/220 (36%), Positives = 116/220 (52%), Gaps = 17/220 (7%)

Query: 81  NENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINL-SRLS 139
           +EN  +++ L   +  L    ++ S L +L +L  LDL  N    ++IPP I  L S L 
Sbjct: 86  SENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNN--ITDIPPLIGLLKSNLK 143

Query: 140 YLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALG 199
            L+LS       +PS +  L NL +LDLS N           +L  L+  L+NL  L L 
Sbjct: 144 ELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDL--------SDLPKLLSNLSNLNNLDLS 194

Query: 200 GVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSI 259
           G  IS  +P  +  LS+L  L LS   +   + S L NL  L  L+LS NN L +LP SI
Sbjct: 195 GNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELS-NNKLEDLPESI 251

Query: 260 GNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRF 299
           GNL  L+ LD+S N++S    +S+G+L +L +L+LS N  
Sbjct: 252 GNLSNLETLDLSNNQISS--ISSLGSLTNLRELDLSGNSL 289

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.3 bits (154), Expect = 4e-10
 Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 31/120 (25%)

Query: 141 LNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGG 200
           L L + G  G IP++I +L +L S++LS NS                             
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNS----------------------------- 453

Query: 201 VTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIG 260
             I   IP SL +++SL +L LS     G IP  LG LT L  L+L+ N+L G +P ++G
Sbjct: 454 --IRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.4 bits (149), Expect = 2e-09
 Identities = 31/81 (38%), Positives = 46/81 (56%)

Query: 275 LSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNL 334
           L G +P  I  L  L+ + LS N  RG  P S+G+ T L  L L+ N F+G +P S G L
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 335 RSLEGLDISECKFSSQIPSSL 355
            SL  L+++    S ++P++L
Sbjct: 490 TSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 4e-09
 Identities = 43/125 (34%), Positives = 56/125 (44%), Gaps = 15/125 (12%)

Query: 535 LDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGR 594
           L L    L G +P  +     HL  ++L  N   G+IP +  S  SL ++DLS N   G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 595 IPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIRE--PNTG-CG 651
           IP SL   +SL+ L+L  N +SG  P+ LG              LH        N G CG
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGR-----------LLHRASFNFTDNAGLCG 530

Query: 652 FPELR 656
            P LR
Sbjct: 531 IPGLR 535

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.9 bits (140), Expect = 2e-08
 Identities = 56/213 (26%), Positives = 78/213 (36%), Gaps = 80/213 (37%)

Query: 30  ERSALLQFKESLTIIRKTSSYYIW--DPCHPKTASWKPEEANIDCCLWDGVEC--NENTG 85
           E SAL   K SL +       + W  DPC P+   W             G +C  +   G
Sbjct: 373 EVSALQTLKSSLGL----PLRFGWNGDPCVPQQHPW------------SGADCQFDSTKG 416

Query: 86  H--VIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNL 143
              +  L L N  L+GFI                           P +I  L  L  +NL
Sbjct: 417 KWFIDGLGLDNQGLRGFI---------------------------PNDISKLRHLQSINL 449

Query: 144 SSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTI 203
           S     G IP  +  +++L  LDLS+NS+                               
Sbjct: 450 SGNSIRGNIPPSLGSITSLEVLDLSYNSF------------------------------- 478

Query: 204 SSPIPHSLANLSSLTLLSLSGCELRGRIPSLLG 236
           +  IP SL  L+SL +L+L+G  L GR+P+ LG
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.5 bits (139), Expect = 2e-08
 Identities = 27/74 (36%), Positives = 40/74 (54%)

Query: 300 RGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLA 359
           RG  P+ +     L  ++L+ N   G +P S G++ SLE LD+S   F+  IP SL  L 
Sbjct: 431 RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490

Query: 360 QLKFLEFSHNNFSG 373
            L+ L  + N+ SG
Sbjct: 491 SLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.4 bits (131), Expect = 2e-07
 Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 6/96 (6%)

Query: 489 LDLSYNYLQGPLPVPPPQTKHYL---VSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGL 545
           L L    L+G +P    + +H     +S NS+ G IP  + + + SLE+LDLSYN+ +G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSIT-SLEVLDLSYNSFNGS 481

Query: 546 LPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSL 581
           +P+ L   +  L IL+L  N   G +P   L GR L
Sbjct: 482 IPESLGQLTS-LRILNLNGNSLSGRVPAA-LGGRLL 515

Length = 623

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 54.9 bits (132), Expect = 2e-07
 Identities = 61/221 (27%), Positives = 95/221 (42%), Gaps = 28/221 (12%)

Query: 158 ELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSL 217
            L+ L ++DL  +   NL E+  P+L       TNL+ L L   +    +P S+  L+ L
Sbjct: 632 SLTGLRNIDLRGSK--NLKEI--PDL----SMATNLETLKLSDCSSLVELPSSIQYLNKL 683

Query: 218 TLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSG 277
             L +S CE    +P+ + NL  L  L+LS  + L   P    N+  L   + +  E   
Sbjct: 684 EDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPS 742

Query: 278 ELPASIGNLASLEQLELSLNRFRGKT----------PHSMGNFTRLYWLSLASNDFSGEL 327
            L   + NL  L   E+   +   +             S+   TRL+   L+      EL
Sbjct: 743 NLR--LENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL---TRLF---LSDIPSLVEL 794

Query: 328 PASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSH 368
           P+S  NL  LE L+I  C     +P+ + NL  L+ L+ S 
Sbjct: 795 PSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSG 834

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 54.5 bits (131), Expect = 2e-07
 Identities = 84/325 (25%), Positives = 132/325 (40%), Gaps = 47/325 (14%)

Query: 131 EIINLS---RLSYLNLSSAGFFGQIPSEILELSNLVSLDLSH-------NSYYNLIELKE 180
           EI +LS    L  L LS      ++PS I  L+ L  LD+S         +  NL  L  
Sbjct: 649 EIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYR 708

Query: 181 PNLGNLVKKL------TNLKELALGGVTISS-PIPHSLANLSSLTLLSLSGCELRGRIPS 233
            NL    +        TN+  L L    I   P    L NL  L L  +   +L  R+  
Sbjct: 709 LNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQP 768

Query: 234 LLGNLT----KLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGE-LPASIGNLAS 288
           L   +T     L  L LS    L ELP+SI NL  L+ L+I  N ++ E LP  I NL S
Sbjct: 769 LTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEI-ENCINLETLPTGI-NLES 826

Query: 289 LEQLELS-LNRFRG-------------------KTPHSMGNFTRLYWLSLASNDFSGELP 328
           LE L+LS  +R R                    + P  +  F+ L +L +   +    + 
Sbjct: 827 LESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVS 886

Query: 329 ASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLE 388
            +   L+ LE +D S+C   ++   +          +  H+    P  + +  +N  +L+
Sbjct: 887 LNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKL--PSTVCINFINCFNLD 944

Query: 389 HLSLSSNRLSLFTKAIFNTSQKFNF 413
             +L   + S+F + I +  +  ++
Sbjct: 945 QEALLQQQ-SIFKQLILSGEEVPSY 968

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 52.7 bits (126), Expect = 6e-07
 Identities = 61/214 (28%), Positives = 91/214 (42%), Gaps = 9/214 (4%)

Query: 452 LIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQG-PLPVPPPQTKHY 510
           L+  S+     L+L     I                +LDL+ N L+     +        
Sbjct: 61  LLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTS 120

Query: 511 LVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGS 570
           L  +N+    IP  I    ++L+ LDLS N +   LP  L N   +L  LDL  N     
Sbjct: 121 LDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNL-PNLKNLDLSFNDLS-D 177

Query: 571 IPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELN 630
           +P+   +  +L  +DLS N +   +P  +   S+L+ LDL NN I     S L  L+ L+
Sbjct: 178 LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLS 235

Query: 631 VLILKSNKLHGMIREPNTGCGFPELRIIDLSNNR 664
            L L +NKL      P +      L  +DLSNN+
Sbjct: 236 GLELSNNKL---EDLPESIGNLSNLETLDLSNNQ 266

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 50.0 bits (119), Expect = 4e-06
 Identities = 59/174 (33%), Positives = 82/174 (47%), Gaps = 15/174 (8%)

Query: 126 SEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGN 185
           S++P  + NLS L+ L+LS       +P EI  LS L  LDLS+NS   L+         
Sbjct: 176 SDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSS------- 227

Query: 186 LVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLD 245
            +  L NL  L L    +   +P S+ NLS+L  L LS  ++     S LG+LT L  LD
Sbjct: 228 -LSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELD 283

Query: 246 LSFNNLLGELPTSIGNLDCLKRLD---ISWNELSGELPASIGNLASLEQLELSL 296
           LS N+L   LP     L  L+ L    ++   L  +L + + N   L   E S 
Sbjct: 284 LSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSS 337

Length = 394

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 13/55 (23%)

Query: 27 HSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCLWDGVECN 81
           + +R ALL FK SL                   +SW P   + D C W GV C+
Sbjct: 1  LNDDRDALLAFKSSLN-----------GDPSGALSSWNPS--SSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 19/60 (31%), Positives = 28/60 (46%)

Query: 556 HLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQI 615
           +L  LDL +N+        F    +L ++DLS N L    P +     SL+ LDL  N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 6e-05
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 604 SLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNN 663
           +LK LDL NN+++         L  L VL L  N L  +   P    G P LR +DLS N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSI--SPEAFSGLPSLRSLDLSGN 58

Query: 664 RF 665
             
Sbjct: 59  NL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.8 bits (109), Expect = 6e-05
 Identities = 58/274 (21%), Positives = 89/274 (32%), Gaps = 61/274 (22%)

Query: 186 LVKKLTNLKELALGGVTIS----SPIPHSLANLSSLTLLSLSGCELR------GRIPSLL 235
           L+ KL  L+ L L G T+       +  +L    SL  L LS  E          +   L
Sbjct: 18  LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL 77

Query: 236 GNLTKLMYLDLSFNNLLGELPTSIGNL-----------------------------DC-- 264
                L  LDLS N L  +    + +L                             D   
Sbjct: 78  TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPP 137

Query: 265 -LKRLDISWNELSGELPASIGNLA----SLEQLELSLNRFRG----KTPHSMGNFTRLYW 315
            L++L +  N L G    ++         L++L L+ N             +     L  
Sbjct: 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEV 197

Query: 316 LSLASNDFSGE----LPASFGNLRSLEGLDISECKFSSQI-----PSSLRNLAQLKFLEF 366
           L L +N  + E    L  +  +L+SLE L++ +   +         + L     L  L  
Sbjct: 198 LDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSL 257

Query: 367 SHNNF--SGPIDLDMFLVNFKHLEHLSLSSNRLS 398
           S N+    G  DL   L   + L  L L  N+  
Sbjct: 258 SCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.0 bits (97), Expect = 8e-05
 Identities = 18/60 (30%), Positives = 29/60 (48%)

Query: 312 RLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNF 371
            L  L L++N  +     +F  L +L+ LD+S    +S  P +   L  L+ L+ S NN 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 52/247 (21%), Positives = 79/247 (31%), Gaps = 60/247 (24%)

Query: 427 FLKNQHYLEVLDLSCNKIHGKVPKWLIE--PSMQNFSYLNLSHNFLIGFYQH----PMFF 480
            L     L+VL L  N +  +  K L        +   L LS N      +         
Sbjct: 18  LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL 77

Query: 481 PRNYDGFTLDLSYNYLQ------------------------------------GPLPVPP 504
            +      LDLS N L                                     G   +PP
Sbjct: 78  TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPP 137

Query: 505 PQTKHYLVSNNSLTGKIPFWICN---SSNSLEILDLSYNNLSG----LLPQCLDNFSDHL 557
              K  L   N L G     +     ++  L+ L+L+ N +       L + L     +L
Sbjct: 138 ALEKLVL-GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANC-NL 195

Query: 558 SILDLQHNKF----CGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVN-----CSSLKFL 608
            +LDL +N        ++ +T  S +SL +++L DN L      +L +       SL  L
Sbjct: 196 EVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTL 255

Query: 609 DLGNNQI 615
            L  N I
Sbjct: 256 SLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 2e-04
 Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 15/117 (12%)

Query: 316 LSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPI 375
           L L +    G +P     LR L+ +++S       IP SL ++  L+ L+ S+N+F+G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 376 DLDMFLVNFKHLEHLSLSSNRLS----------LFTKAIFNTSQKFNFV---GLRSC 419
                L     L  L+L+ N LS          L  +A FN +         GLR+C
Sbjct: 483 PES--LGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 537

Length = 623

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 45.3 bits (107), Expect = 2e-04
 Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 29/164 (17%)

Query: 127 EIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKE-PNLGN 185
           E+P  I NL +L +L + +      +P+ I  L +L SLDLS  S      L+  P++  
Sbjct: 793 ELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS-----RLRTFPDIS- 845

Query: 186 LVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLD 245
                TN+ +L L    I   +P  +   S+L+ L ++GC    R+   +  L  L  +D
Sbjct: 846 -----TNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD 899

Query: 246 LSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASL 289
            S               DC    + SWN    E+  +  N+ S 
Sbjct: 900 FS---------------DCGALTEASWNGSPSEVAMATDNIHSK 928

syringae 6; Provisional. Length = 1153

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 19/60 (31%), Positives = 26/60 (43%)

Query: 580 SLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKL 639
           +L  +DLS+N L      +     +LK LDL  N ++   P     L  L  L L  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 20/60 (33%), Positives = 27/60 (45%)

Query: 754 GLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNL 813
            L+ L L+NN L          L  L+ LDLS N  +   P+    L  L   ++S NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 22/60 (36%), Positives = 26/60 (43%)

Query: 216 SLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNEL 275
           +L  L LS   L          L  L  LDLS NNL    P +   L  L+ LD+S N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 7e-04
 Identities = 22/60 (36%), Positives = 27/60 (45%)

Query: 192 NLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNL 251
           NLK L L    ++     +   L +L +L LSG  L    P     L  L  LDLS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 20/59 (33%), Positives = 26/59 (44%)

Query: 731 LTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKF 789
           L  + LS+NR       +   L  L+VL L+ N+L          L  L SLDLS N  
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.0 bits (96), Expect = 0.003
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 608 LDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTG 667
           L L N  + G  P+ +  LR L  + L  N + G I  P +      L ++DLS N F G
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNI--PPSLGSITSLEVLDLSYNSFNG 480

Query: 668 KLP 670
            +P
Sbjct: 481 SIP 483

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	922
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
PLN03150	623	hypothetical protein; Provisional	99.64
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.57
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.55
PLN03150	623	hypothetical protein; Provisional	99.44
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.1
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.09
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.08
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.07
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.06
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.04
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.01
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.01
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.93
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.92
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.88
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.85
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.84
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.83
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.78
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.75
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.67
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.63
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.58
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.52
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.43
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.41
KOG4341	483	consensus F-box protein containing LRR [General fu	98.38
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.28
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.27
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.25
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.23
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.15
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.14
KOG4341	483	consensus F-box protein containing LRR [General fu	98.03
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.78
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.78
PRK15386	426	type III secretion protein GogB; Provisional	97.76
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.68
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.67
PRK15386	426	type III secretion protein GogB; Provisional	97.57
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.52
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.49
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.18
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.68
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.68
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.63
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.57
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.47
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.43
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.05
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.9
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.6
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.57
KOG4308	478	consensus LRR-containing protein [Function unknown	93.87
KOG4308	478	consensus LRR-containing protein [Function unknown	93.41
smart00370	26	LRR Leucine-rich repeats, outliers.	88.96
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.96
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.58
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.12
smart00370	26	LRR Leucine-rich repeats, outliers.	87.12
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	85.68
KOG3864	221	consensus Uncharacterized conserved protein [Funct	84.15
KOG3864	221	consensus Uncharacterized conserved protein [Funct	83.49
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	83.09
KOG0473	326	consensus Leucine-rich repeat protein [Function un	82.19
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	81.92

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=6.1e-73  Score=710.78  Aligned_cols=584  Identities=38%  Similarity=0.615  Sum_probs=420.4

Q ss_pred             CHHHHHHHHHHhhcCCcCCCCCcccccCCCCCCCCCCCCCCCCCCCccccceEecCCCCcEEEEECCCCCCCCcccCccc
Q 002435           27 HSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCLWDGVECNENTGHVIKLDLSNSCLQGFINSSSG  106 (922)
Q Consensus        27 ~~~~~~all~~k~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~  106 (922)
                      +++|++||++||+++.++.+            .+.+|+.   ..+||.|+||+|++ .++|+.|+|+++.++|.++.  .
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~------------~~~~w~~---~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~--~   88 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLK------------YLSNWNS---SADVCLWQGITCNN-SSRVVSIDLSGKNISGKISS--A   88 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcc------------cCCCCCC---CCCCCcCcceecCC-CCcEEEEEecCCCccccCCh--H
Confidence            55899999999999975543            5789976   67899999999986 46999999999999987654  7


Q ss_pred             cccCCCCCeeeCCCCCCCCCCCCcccc-CCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhH
Q 002435          107 LFKLVHLEWLDLAFNYFICSEIPPEII-NLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGN  185 (922)
Q Consensus       107 l~~l~~L~~L~Ls~n~~~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~  185 (922)
                      +..+++|++|+|++|.+.+. +|..+. .+++|++|+|++|.+.+.+|.  +.+++|++|++++|.              
T Consensus        89 ~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~--------------  151 (968)
T PLN00113         89 IFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNM--------------  151 (968)
T ss_pred             HhCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCc--------------
Confidence            77788888888888877654 666544 777777777777777776664  345566666666554              


Q ss_pred             HHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCC
Q 002435          186 LVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCL  265 (922)
Q Consensus       186 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  265 (922)
                                       +.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..++++++|
T Consensus       152 -----------------~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  214 (968)
T PLN00113        152 -----------------LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL  214 (968)
T ss_pred             -----------------ccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence                             344445555555555555555555555555555555555555555555555555555555556


Q ss_pred             cEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCC
Q 002435          266 KRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISEC  345 (922)
Q Consensus       266 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  345 (922)
                      ++|++++|.+++.+|..+.++++|++|++++|.+.+..|..++.+++|+.|++++|.+.+.+|..+.++++|++|++++|
T Consensus       215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  294 (968)
T PLN00113        215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN  294 (968)
T ss_pred             cEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence            66666655555555555555556666666555555555555555555555555555555555555555556666666666


Q ss_pred             ccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCc
Q 002435          346 KFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFP  425 (922)
Q Consensus       346 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp  425 (922)
                      .+.+.+|..+..+++|+.|++++|.+.+.++                                                 
T Consensus       295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------------------------------------------------  325 (968)
T PLN00113        295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIP-------------------------------------------------  325 (968)
T ss_pred             eeccCCChhHcCCCCCcEEECCCCccCCcCC-------------------------------------------------
Confidence            5555555555555555555555554443322                                                 


Q ss_pred             ccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCC
Q 002435          426 NFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPP  505 (922)
Q Consensus       426 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~  505 (922)
                      ..+..+++|+.|++++|.+.+.+|..+.                                                    
T Consensus       326 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~----------------------------------------------------  353 (968)
T PLN00113        326 VALTSLPRLQVLQLWSNKFSGEIPKNLG----------------------------------------------------  353 (968)
T ss_pred             hhHhcCCCCCEEECcCCCCcCcCChHHh----------------------------------------------------
Confidence            1122333444444444444443333322                                                    


Q ss_pred             CCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEe
Q 002435          506 QTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMID  585 (922)
Q Consensus       506 ~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  585 (922)
                                           . +++|+.|++++|++++.+|..+..+. +|+.|++++|++.+.+|..+..+++|+.|+
T Consensus       354 ---------------------~-~~~L~~L~Ls~n~l~~~~p~~~~~~~-~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~  410 (968)
T PLN00113        354 ---------------------K-HNNLTVLDLSTNNLTGEIPEGLCSSG-NLFKLILFSNSLEGEIPKSLGACRSLRRVR  410 (968)
T ss_pred             ---------------------C-CCCCcEEECCCCeeEeeCChhHhCcC-CCCEEECcCCEecccCCHHHhCCCCCCEEE
Confidence                                 2 44566666666666666666666655 577777777777777777777777788888


Q ss_pred             cCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcC
Q 002435          586 LSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRF  665 (922)
Q Consensus       586 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l  665 (922)
                      +++|++++..|..+..++.|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|...   ..++|+.||+++|++
T Consensus       411 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~---~~~~L~~L~ls~n~l  487 (968)
T PLN00113        411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF---GSKRLENLDLSRNQF  487 (968)
T ss_pred             CcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc---ccccceEEECcCCcc
Confidence            88888877777778888888888888888888888777788888888888888887777653   357899999999999


Q ss_pred             CCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccC
Q 002435          666 TGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEI  745 (922)
Q Consensus       666 ~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~i  745 (922)
                      ++.+|..+ ..                                                   .+.|+.|+|++|+++|.+
T Consensus       488 ~~~~~~~~-~~---------------------------------------------------l~~L~~L~Ls~N~l~~~~  515 (968)
T PLN00113        488 SGAVPRKL-GS---------------------------------------------------LSELMQLKLSENKLSGEI  515 (968)
T ss_pred             CCccChhh-hh---------------------------------------------------hhccCEEECcCCcceeeC
Confidence            98887541 11                                                   245788999999999999


Q ss_pred             cccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCCCC
Q 002435          746 PTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPT  825 (922)
Q Consensus       746 p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~~~~~~~  825 (922)
                      |..++++++|++|+|++|.++|.+|..++++++|++|||++|+++|.+|..+.++++|++|++++|+++|.+|..++|.+
T Consensus       516 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~  595 (968)
T PLN00113        516 PDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLA  595 (968)
T ss_pred             ChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccCCCcCCCCCC
Q 002435          826 FDKTSFNGNLGLCGKP  841 (922)
Q Consensus       826 ~~~~s~~gn~~lcg~~  841 (922)
                      +...+|.||+++||.+
T Consensus       596 ~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        596 INASAVAGNIDLCGGD  611 (968)
T ss_pred             cChhhhcCCccccCCc
Confidence            9999999999999864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=7.1e-57  Score=565.42  Aligned_cols=515  Identities=36%  Similarity=0.587  Sum_probs=361.3

Q ss_pred             CCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhcc-CCCCCCEEeccCccCCccCccccCCC
Q 002435          160 SNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLA-NLSSLTLLSLSGCELRGRIPSLLGNL  238 (922)
Q Consensus       160 ~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~l  238 (922)
                      .+++.|++++|.+.       +.++..+..+++|++|++++|.+.+.+|..+. .+++|++|++++|.+.+.+|.  +.+
T Consensus        69 ~~v~~L~L~~~~i~-------~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l  139 (968)
T PLN00113         69 SRVVSIDLSGKNIS-------GKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSI  139 (968)
T ss_pred             CcEEEEEecCCCcc-------ccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--ccc
Confidence            35666666666532       22334455555555555555555554444433 455555555555555544443  234


Q ss_pred             CCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEe
Q 002435          239 TKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSL  318 (922)
Q Consensus       239 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  318 (922)
                      ++|++|+|++|.+++.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+..|..++.+++|+.|++
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  219 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL  219 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence            45555555555555555555555555555555555555455555555555555555555555444555555555555555


Q ss_pred             eccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCcccc
Q 002435          319 ASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLS  398 (922)
Q Consensus       319 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~  398 (922)
                      ++|.+.+.+|..++++++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+                       
T Consensus       220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-----------------------  276 (968)
T PLN00113        220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI-----------------------  276 (968)
T ss_pred             cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC-----------------------
Confidence            555554444444444555555555555444444444444444444444444443332                       


Q ss_pred             ccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCC
Q 002435          399 LFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPM  478 (922)
Q Consensus       399 ~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  478 (922)
                                                |..+..+++|++|++++|.+.+.+|..+.  .+++|+.|++++|.+        
T Consensus       277 --------------------------p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~l~~n~~--------  320 (968)
T PLN00113        277 --------------------------PPSIFSLQKLISLDLSDNSLSGEIPELVI--QLQNLEILHLFSNNF--------  320 (968)
T ss_pred             --------------------------chhHhhccCcCEEECcCCeeccCCChhHc--CCCCCcEEECCCCcc--------
Confidence                                      33344455566666666666666665554  444554444444433        


Q ss_pred             CCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCccc
Q 002435          479 FFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLS  558 (922)
Q Consensus       479 ~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~  558 (922)
                                                             ++.+|..+.. +++|+.|++++|.+++.+|..+..+. +|+
T Consensus       321 ---------------------------------------~~~~~~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~~~-~L~  359 (968)
T PLN00113        321 ---------------------------------------TGKIPVALTS-LPRLQVLQLWSNKFSGEIPKNLGKHN-NLT  359 (968)
T ss_pred             ---------------------------------------CCcCChhHhc-CCCCCEEECcCCCCcCcCChHHhCCC-CCc
Confidence                                                   2334444444 78899999999999999999999987 799


Q ss_pred             EEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCc
Q 002435          559 ILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNK  638 (922)
Q Consensus       559 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~  638 (922)
                      .|++++|++++.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++..|..|..+++|+.|++++|+
T Consensus       360 ~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~  439 (968)
T PLN00113        360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN  439 (968)
T ss_pred             EEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeec
Q 002435          639 LHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNK  718 (922)
Q Consensus       639 l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  718 (922)
                      +.+.+|...  ..+++|+.|++++|++.+.+|..+ .                                           
T Consensus       440 l~~~~~~~~--~~l~~L~~L~L~~n~~~~~~p~~~-~-------------------------------------------  473 (968)
T PLN00113        440 LQGRINSRK--WDMPSLQMLSLARNKFFGGLPDSF-G-------------------------------------------  473 (968)
T ss_pred             ccCccChhh--ccCCCCcEEECcCceeeeecCccc-c-------------------------------------------
Confidence            999887655  578999999999999998777421 0                                           


Q ss_pred             ccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCccccc
Q 002435          719 GQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLV  798 (922)
Q Consensus       719 ~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~  798 (922)
                               ...|+.|||++|+++|.+|..+.++++|+.|+|++|++++.+|+.++++++|++|+|++|.++|.+|..+.
T Consensus       474 ---------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  544 (968)
T PLN00113        474 ---------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS  544 (968)
T ss_pred             ---------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHh
Confidence                     13588999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCeEeccCCccccCCCCCC-CCCCCCccccCCCcCCC
Q 002435          799 DLTFLEFFNVSNNNLTGPIPQGN-QFPTFDKTSFNGNLGLC  838 (922)
Q Consensus       799 ~L~~L~~L~ls~N~lsg~iP~~~-~~~~~~~~s~~gn~~lc  838 (922)
                      +++.|+.||+++|+++|.+|... .+..+......+|+..+
T Consensus       545 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             CcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            99999999999999999999752 23334444556665444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.5e-38  Score=332.89  Aligned_cols=404  Identities=24%  Similarity=0.281  Sum_probs=255.4

Q ss_pred             CEEEcCCCcCCCCCchhccCC--CCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcc
Q 002435          194 KELALGGVTISSPIPHSLANL--SSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDIS  271 (922)
Q Consensus       194 ~~L~L~~n~~~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  271 (922)
                      +.|++++..+....-..+..+  +.-+.|++++|.+....+..|.++++|+.+++.+|.++ .+|.......+|+.|+|.
T Consensus        55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~  133 (873)
T KOG4194|consen   55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLR  133 (873)
T ss_pred             eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeee
Confidence            345555555443222222222  23344666666666555555666666666666666655 445444444456666666


Q ss_pred             cCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccC
Q 002435          272 WNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQI  351 (922)
Q Consensus       272 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  351 (922)
                      +|.|+..-.+.+..++.|+.|||+.|.++......|..-.++++|+|++|+|+..-...|..+.+|..|.|+.|+++...
T Consensus       134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp  213 (873)
T KOG4194|consen  134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP  213 (873)
T ss_pred             ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC
Confidence            66665555555555666666666666665544445555555666666666665555555555556666666666665544


Q ss_pred             chhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcccccCC
Q 002435          352 PSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQ  431 (922)
Q Consensus       352 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~  431 (922)
                      +..|..+++|+.|+|..|.+. .+....| .++++|+.|.+..|.+..+.+++|..+.++++|+|+.|+++.        
T Consensus       214 ~r~Fk~L~~L~~LdLnrN~ir-ive~ltF-qgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~--------  283 (873)
T KOG4194|consen  214 QRSFKRLPKLESLDLNRNRIR-IVEGLTF-QGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA--------  283 (873)
T ss_pred             HHHhhhcchhhhhhcccccee-eehhhhh-cCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh--------
Confidence            455555666666666666554 2222222 555555555555555555555555555555555555554443        


Q ss_pred             CCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceee
Q 002435          432 HYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYL  511 (922)
Q Consensus       432 ~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~  511 (922)
                                     .-..|+.  ++++|+.|++++|.|..+....+.+                               
T Consensus       284 ---------------vn~g~lf--gLt~L~~L~lS~NaI~rih~d~Wsf-------------------------------  315 (873)
T KOG4194|consen  284 ---------------VNEGWLF--GLTSLEQLDLSYNAIQRIHIDSWSF-------------------------------  315 (873)
T ss_pred             ---------------hhccccc--ccchhhhhccchhhhheeecchhhh-------------------------------
Confidence                           3333433  4445555555544444333222222                               


Q ss_pred             ccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcc
Q 002435          512 VSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLL  591 (922)
Q Consensus       512 ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  591 (922)
                                       +++|++|+|++|+|+...+.+|..+. .|++|+|++|+|+..-...|..+.+|++|||++|.|
T Consensus       316 -----------------tqkL~~LdLs~N~i~~l~~~sf~~L~-~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l  377 (873)
T KOG4194|consen  316 -----------------TQKLKELDLSSNRITRLDEGSFRVLS-QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL  377 (873)
T ss_pred             -----------------cccceeEeccccccccCChhHHHHHH-HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence                             56788888888888887788888887 688888888888877778888888888889888888


Q ss_pred             cccCCc---cccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCC
Q 002435          592 QGRIPR---SLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGK  668 (922)
Q Consensus       592 ~~~~~~---~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~  668 (922)
                      +..+.+   .|.++++|+.|+|.+|++..+.-.+|.+++.|+.|+|.+|.+..+-|..+  ..+ +|+.|-+..-.|-|.
T Consensus       378 s~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAF--e~m-~Lk~Lv~nSssflCD  454 (873)
T KOG4194|consen  378 SWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAF--EPM-ELKELVMNSSSFLCD  454 (873)
T ss_pred             EEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccc--ccc-hhhhhhhcccceEEe
Confidence            776543   57788889999999999887777888889999999999998888876665  444 788888888888888


Q ss_pred             CChhhhhcc
Q 002435          669 LPSKYFQCW  677 (922)
Q Consensus       669 ip~~~~~~~  677 (922)
                      +-..|+..|
T Consensus       455 Cql~Wl~qW  463 (873)
T KOG4194|consen  455 CQLKWLAQW  463 (873)
T ss_pred             ccHHHHHHH
Confidence            887887665

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.2e-40  Score=335.26  Aligned_cols=476  Identities=28%  Similarity=0.393  Sum_probs=377.0

Q ss_pred             EEEEECCCCCCCCcccCccccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEE
Q 002435           87 VIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLD  166 (922)
Q Consensus        87 v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  166 (922)
                      +..+.+++|.+.-..   +.+.++..|.+|+++.|++.  ++|++++.+..++.|+.++|.+ ..+|++++.+.+|+.|+
T Consensus        47 l~~lils~N~l~~l~---~dl~nL~~l~vl~~~~n~l~--~lp~aig~l~~l~~l~vs~n~l-s~lp~~i~s~~~l~~l~  120 (565)
T KOG0472|consen   47 LQKLILSHNDLEVLR---EDLKNLACLTVLNVHDNKLS--QLPAAIGELEALKSLNVSHNKL-SELPEQIGSLISLVKLD  120 (565)
T ss_pred             hhhhhhccCchhhcc---HhhhcccceeEEEeccchhh--hCCHHHHHHHHHHHhhcccchH-hhccHHHhhhhhhhhhh
Confidence            567888888876542   27888999999999999985  5899999999999999999998 78999999999999999


Q ss_pred             cCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeC
Q 002435          167 LSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDL  246 (922)
Q Consensus       167 Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  246 (922)
                      .++|.+        ..+++.++.+..|+.++..+|+++. .|+++.++.+|..+++.+|.+....|..+. |+.|++||.
T Consensus       121 ~s~n~~--------~el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~  190 (565)
T KOG0472|consen  121 CSSNEL--------KELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDC  190 (565)
T ss_pred             ccccce--------eecCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhccc
Confidence            999985        4566788999999999999999876 688899999999999999999955555444 999999999


Q ss_pred             cCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCc
Q 002435          247 SFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGE  326 (922)
Q Consensus       247 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  326 (922)
                      ..|.++ .+|+.++.+.+|+.|++.+|++. ..| .|..+..|++|.++.|++.-........++++..||+.+|++. +
T Consensus       191 ~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e  266 (565)
T KOG0472|consen  191 NSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-E  266 (565)
T ss_pred             chhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-c
Confidence            999876 78889999999999999999998 667 7999999999999999998444455568999999999999998 7


Q ss_pred             ccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhc-cCCcceEe-------CcCccc-
Q 002435          327 LPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVN-FKHLEHLS-------LSSNRL-  397 (922)
Q Consensus       327 ~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~-l~~L~~L~-------Ls~n~l-  397 (922)
                      .|+.+.-+.+|++||+++|.+++ +|.+++++ +|+.|-+.+|.+. ++..+....+ -.-|++|.       ++..+- 
T Consensus       267 ~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~  343 (565)
T KOG0472|consen  267 VPDEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGG  343 (565)
T ss_pred             CchHHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCccc
Confidence            89999999999999999999994 77789999 9999999999886 2222211000 01122221       111110 


Q ss_pred             --c-----ccccccccCCCCccEEEecCCCCCCCcccccCCCC---ccEEECcCCCCCCCCCccccccCCCCccEEEccC
Q 002435          398 --S-----LFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHY---LEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSH  467 (922)
Q Consensus       398 --~-----~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~---L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~  467 (922)
                        +     ...........+.+.|++++-+++.+|+.......   ....+++.|++. .+|..+.  .+..+.      
T Consensus       344 ~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~--~lkelv------  414 (565)
T KOG0472|consen  344 TETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLV--ELKELV------  414 (565)
T ss_pred             ccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhH--HHHHHH------
Confidence              0     00011122345778889999999999976544443   888999999997 6676544  222211      


Q ss_pred             CccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCC
Q 002435          468 NFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLP  547 (922)
Q Consensus       468 n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p  547 (922)
                                                              +.+.+++| ..+.+|..++. +++|..|+|++|-+. .+|
T Consensus       415 ----------------------------------------T~l~lsnn-~isfv~~~l~~-l~kLt~L~L~NN~Ln-~LP  451 (565)
T KOG0472|consen  415 ----------------------------------------TDLVLSNN-KISFVPLELSQ-LQKLTFLDLSNNLLN-DLP  451 (565)
T ss_pred             ----------------------------------------HHHHhhcC-ccccchHHHHh-hhcceeeecccchhh-hcc
Confidence                                                    11122222 22356677777 889999999999887 678


Q ss_pred             chhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCC
Q 002435          548 QCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLR  627 (922)
Q Consensus       548 ~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  627 (922)
                      ..++.+. .|+.|++++|+|. .+|.....+..++.+-.++|++....|..+.++.+|++|||.+|.+. .+|..+++++
T Consensus       452 ~e~~~lv-~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmt  528 (565)
T KOG0472|consen  452 EEMGSLV-RLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMT  528 (565)
T ss_pred             hhhhhhh-hhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcccc
Confidence            8888888 6999999999997 77888888888888888999999877777999999999999999998 7788999999


Q ss_pred             CCCEEEcCCCccc
Q 002435          628 ELNVLILKSNKLH  640 (922)
Q Consensus       628 ~L~~L~L~~N~l~  640 (922)
                      +|++|.+.+|+|.
T Consensus       529 nL~hLeL~gNpfr  541 (565)
T KOG0472|consen  529 NLRHLELDGNPFR  541 (565)
T ss_pred             ceeEEEecCCccC
Confidence            9999999999998

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=7.9e-37  Score=322.66  Aligned_cols=390  Identities=24%  Similarity=0.271  Sum_probs=280.8

Q ss_pred             CCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCC
Q 002435          162 LVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKL  241 (922)
Q Consensus       162 L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  241 (922)
                      -+.||.+++.+..+   +...++..+  .+.-+.|++++|.++..-+..|.++++|+++++.+|.++ .+|...+...+|
T Consensus        54 ~~lldcs~~~lea~---~~~~l~g~l--p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl  127 (873)
T KOG4194|consen   54 TRLLDCSDRELEAI---DKSRLKGFL--PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHL  127 (873)
T ss_pred             ceeeecCccccccc---cccccCCcC--ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccce
Confidence            35688888875221   111111111  134567999999999999999999999999999999998 788877777889


Q ss_pred             CEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeecc
Q 002435          242 MYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASN  321 (922)
Q Consensus       242 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  321 (922)
                      +.|+|.+|.|+..-.+.+..++.|+.|||+.|.|+..--..|..-.++++|+|++|.|+......|..+.+|..|.|+.|
T Consensus       128 ~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN  207 (873)
T KOG4194|consen  128 EKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN  207 (873)
T ss_pred             eEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC
Confidence            99999999999888889999999999999999998555556777789999999999999999999999999999999999


Q ss_pred             CCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccc
Q 002435          322 DFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFT  401 (922)
Q Consensus       322 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  401 (922)
                      +++...+..|.++++|+.|+|..|++.-..-..|.++++|+.|.+..|.+.. .....| ..+.++++|+|+.|+++.+.
T Consensus       208 rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~k-L~DG~F-y~l~kme~l~L~~N~l~~vn  285 (873)
T KOG4194|consen  208 RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISK-LDDGAF-YGLEKMEHLNLETNRLQAVN  285 (873)
T ss_pred             cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccc-ccCcce-eeecccceeecccchhhhhh
Confidence            9997777788889999999999999985545678999999999999999983 444445 68999999999999999999


Q ss_pred             cccccCCCCccEEEecCCCCCCC-cccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCC
Q 002435          402 KAIFNTSQKFNFVGLRSCNLNEF-PNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFF  480 (922)
Q Consensus       402 ~~~~~~~~~L~~L~L~~~~l~~l-p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  480 (922)
                      ...+..+..|+.|++++|.|..+ ++....+++|++|+|++|+|+..-+..+.  .+..|+.|+|++|.+..        
T Consensus       286 ~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~--~L~~Le~LnLs~Nsi~~--------  355 (873)
T KOG4194|consen  286 EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFR--VLSQLEELNLSHNSIDH--------  355 (873)
T ss_pred             cccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHH--HHHHhhhhcccccchHH--------
Confidence            88777777777777777777744 34455666777777777777654444443  34444444444444321        


Q ss_pred             CCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCc---hhhhccCcc
Q 002435          481 PRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQ---CLDNFSDHL  557 (922)
Q Consensus       481 ~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~---~l~~l~~~L  557 (922)
                                                              +....+..+++|++|||++|.++..+-+   .|.+++ +|
T Consensus       356 ----------------------------------------l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~-~L  394 (873)
T KOG4194|consen  356 ----------------------------------------LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLP-SL  394 (873)
T ss_pred             ----------------------------------------HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccch-hh
Confidence                                                    1222222245555556655555543322   233333 45


Q ss_pred             cEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECC
Q 002435          558 SILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLG  611 (922)
Q Consensus       558 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls  611 (922)
                      +.|++.+|++..+...+|.++.+|+.|||.+|.|..+-|++|..+ .|+.|.+.
T Consensus       395 rkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  395 RKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             hheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence            555555555554444455555555555555555554555555544 44444443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3.2e-39  Score=326.81  Aligned_cols=482  Identities=28%  Similarity=0.358  Sum_probs=312.6

Q ss_pred             CCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCC
Q 002435          160 SNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLT  239 (922)
Q Consensus       160 ~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~  239 (922)
                      ..|+.|++++|.+        ..+.+.+.++..|.+|++++|++.. .|++++.+..++.++.++|.+. .+|+.++.+.
T Consensus        45 v~l~~lils~N~l--------~~l~~dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~  114 (565)
T KOG0472|consen   45 VDLQKLILSHNDL--------EVLREDLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLI  114 (565)
T ss_pred             cchhhhhhccCch--------hhccHhhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhh
Confidence            4455566666543        2222344555555566665555543 4555666666666666666665 5566666666


Q ss_pred             CCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEee
Q 002435          240 KLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLA  319 (922)
Q Consensus       240 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  319 (922)
                      +|..|+.++|.+. .+|+.++.+..|+.++..+|+++ ..|+.+..+.+|..+++.+|++....|..+. ++.|++++..
T Consensus       115 ~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~  191 (565)
T KOG0472|consen  115 SLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCN  191 (565)
T ss_pred             hhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccc
Confidence            6666666666665 44555666666666666666665 4555666666666666666666654444444 6666666666


Q ss_pred             ccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccc
Q 002435          320 SNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSL  399 (922)
Q Consensus       320 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  399 (922)
                      .|.+. .+|..++.+.+|+-|++..|++. .+| .|.+|..|++++++.|.+. .+|.+.. .+++++..||+.+|+++.
T Consensus       192 ~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~-~~L~~l~vLDLRdNklke  266 (565)
T KOG0472|consen  192 SNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHL-KHLNSLLVLDLRDNKLKE  266 (565)
T ss_pred             hhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHh-cccccceeeecccccccc
Confidence            66554 55666666666666666666665 344 5666666666666666665 4444443 566666666666666666


Q ss_pred             cccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEE-------ccCC---c
Q 002435          400 FTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLN-------LSHN---F  469 (922)
Q Consensus       400 ~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~-------L~~n---~  469 (922)
                      .+.... -+.+|++|++++|.++.+|..++++ +|+.|-+.+|.+...--+.+..+.-.-|++|.       ++..   .
T Consensus       267 ~Pde~c-lLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~  344 (565)
T KOG0472|consen  267 VPDEIC-LLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGT  344 (565)
T ss_pred             CchHHH-HhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccc
Confidence            655432 4556667777777777777777777 67777777777642211111100000111110       0000   0


Q ss_pred             cccccCCCCCCCC---CCCCceEeccCccccCCCCCCC-----CCCceeeccCCcccCcCChhhhhcCCcc-ceEEccCc
Q 002435          470 LIGFYQHPMFFPR---NYDGFTLDLSYNYLQGPLPVPP-----PQTKHYLVSNNSLTGKIPFWICNSSNSL-EILDLSYN  540 (922)
Q Consensus       470 l~~~~~~~~~~~~---~~~l~~L~ls~n~l~~~~~~~~-----~~l~~L~ls~n~l~~~ip~~~~~~~~~L-~~L~Ls~N  540 (922)
                      -+........++.   ....+.|+++.-+++..+...+     .-++..+++.|++. .+|..+.. +..+ +.+++++|
T Consensus       345 e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~-lkelvT~l~lsnn  422 (565)
T KOG0472|consen  345 ETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVE-LKELVTDLVLSNN  422 (565)
T ss_pred             cccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHH-HHHHHHHHHhhcC
Confidence            0000001111111   2234567777777776554322     23678889999988 78877766 3343 45666776


Q ss_pred             cCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcc
Q 002435          541 NLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFP  620 (922)
Q Consensus       541 ~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p  620 (922)
                      .+. -+|..++.++ +|..|+|++|-+. .+|..++.+..|+.||++.|++. ..|.++..+..|+.+-.++|++....|
T Consensus       423 ~is-fv~~~l~~l~-kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~  498 (565)
T KOG0472|consen  423 KIS-FVPLELSQLQ-KLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDP  498 (565)
T ss_pred             ccc-cchHHHHhhh-cceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccCh
Confidence            665 7788888888 7999999999887 78999999999999999999998 789999888999999999999998888


Q ss_pred             hhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChh
Q 002435          621 SWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSK  672 (922)
Q Consensus       621 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~  672 (922)
                      ..+.++.+|++|+|.+|.+..+.|.-   +++++|++|++++|+|.  .|+.
T Consensus       499 ~~l~nm~nL~tLDL~nNdlq~IPp~L---gnmtnL~hLeL~gNpfr--~Pr~  545 (565)
T KOG0472|consen  499 SGLKNMRNLTTLDLQNNDLQQIPPIL---GNMTNLRHLELDGNPFR--QPRH  545 (565)
T ss_pred             HHhhhhhhcceeccCCCchhhCChhh---ccccceeEEEecCCccC--CCHH
Confidence            88999999999999999998775443   68999999999999997  6654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=7.1e-36  Score=332.51  Aligned_cols=450  Identities=28%  Similarity=0.346  Sum_probs=261.7

Q ss_pred             CchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCC
Q 002435          207 IPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNL  286 (922)
Q Consensus       207 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l  286 (922)
                      .|..+..+++|+.|.++.|.+. ..|.+..++.+|++|.|.+|.+. ..|..+..+.+|+.|+++.|.+. .+|..+..+
T Consensus        60 fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~l  136 (1081)
T KOG0618|consen   60 FPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVL  136 (1081)
T ss_pred             CCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhh
Confidence            3444555555555555555555 44555666666666666666655 55666666666667777766665 566666666


Q ss_pred             CCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEc
Q 002435          287 ASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEF  366 (922)
Q Consensus       287 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  366 (922)
                      +.++.+..++|....    .++... ++.+++..|.+.+.++..+..++.  .|+|++|.+. .  ..+..+++|+.+..
T Consensus       137 t~~~~~~~s~N~~~~----~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c  206 (1081)
T KOG0618|consen  137 TAEEELAASNNEKIQ----RLGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHC  206 (1081)
T ss_pred             hHHHHHhhhcchhhh----hhcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhh
Confidence            667777777662111    122222 666777777777766666666555  6788888776 1  24567777888888


Q ss_pred             cCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCC
Q 002435          367 SHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHG  446 (922)
Q Consensus       367 ~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~  446 (922)
                      ..|++... .     -.-++|+.|+.++|.+......  ....++++++++.++++.+|+|+..+.+|+.++..+|.++ 
T Consensus       207 ~rn~ls~l-~-----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-  277 (1081)
T KOG0618|consen  207 ERNQLSEL-E-----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-  277 (1081)
T ss_pred             hhcccceE-E-----ecCcchheeeeccCcceeeccc--cccccceeeecchhhhhcchHHHHhcccceEecccchhHH-
Confidence            87777622 1     2457788888888887733221  2356777778888888878888877888888877777774 


Q ss_pred             CCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhh
Q 002435          447 KVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWIC  526 (922)
Q Consensus       447 ~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~  526 (922)
                      .+|..+.  ...+|+.|...+|.+.                                                .+|....
T Consensus       278 ~lp~ri~--~~~~L~~l~~~~nel~------------------------------------------------yip~~le  307 (1081)
T KOG0618|consen  278 ALPLRIS--RITSLVSLSAAYNELE------------------------------------------------YIPPFLE  307 (1081)
T ss_pred             hhHHHHh--hhhhHHHHHhhhhhhh------------------------------------------------hCCCccc
Confidence            4444433  3444444444444332                                                2232222


Q ss_pred             hcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCc
Q 002435          527 NSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLK  606 (922)
Q Consensus       527 ~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~  606 (922)
                      . .++|+.|||..|++....+..+.....+|..|+.+.|++....-..=...+.|+.|++.+|.++...-..+.+..+|+
T Consensus       308 ~-~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLK  386 (1081)
T KOG0618|consen  308 G-LKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLK  386 (1081)
T ss_pred             c-cceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcccccee
Confidence            2 456777777777776332222222222355555566665532211112234455555555555554444555555555


Q ss_pred             EEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccc
Q 002435          607 FLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTS  686 (922)
Q Consensus       607 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~  686 (922)
                      +|+|++|++.......+.+                          ++.|+.|+||+|+++ .+|.. ...|         
T Consensus       387 VLhLsyNrL~~fpas~~~k--------------------------le~LeeL~LSGNkL~-~Lp~t-va~~---------  429 (1081)
T KOG0618|consen  387 VLHLSYNRLNSFPASKLRK--------------------------LEELEELNLSGNKLT-TLPDT-VANL---------  429 (1081)
T ss_pred             eeeecccccccCCHHHHhc--------------------------hHHhHHHhcccchhh-hhhHH-HHhh---------
Confidence            5555555555333333444                          444555555555554 34422 1112         


Q ss_pred             cccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCcccc
Q 002435          687 ELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLH  766 (922)
Q Consensus       687 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~  766 (922)
                                                                ..|++|...+|++. ..| ++.+++.|+.+|+|.|+|+
T Consensus       430 ------------------------------------------~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  430 ------------------------------------------GRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             ------------------------------------------hhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence                                                      22444555566666 556 7778888888888888887


Q ss_pred             cc-CCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCC
Q 002435          767 GH-ILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNN  811 (922)
Q Consensus       767 ~~-ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N  811 (922)
                      .. +|..... ++|++|||++|.=.-.-...|..+..+..+++.-|
T Consensus       466 ~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  466 EVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             hhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            54 3443333 68888888888743344455666777777777766

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-35  Score=327.36  Aligned_cols=471  Identities=27%  Similarity=0.324  Sum_probs=260.0

Q ss_pred             cccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHH
Q 002435          107 LFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNL  186 (922)
Q Consensus       107 l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~  186 (922)
                      +..-..++.|+++.|.+.... -+.+.+.-+|+.||+++|.+ +..|..+..+.+|+.|+++.|.|        ..+|..
T Consensus        17 i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~-~~fp~~it~l~~L~~ln~s~n~i--------~~vp~s   86 (1081)
T KOG0618|consen   17 ILNNEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQI-SSFPIQITLLSHLRQLNLSRNYI--------RSVPSS   86 (1081)
T ss_pred             hccHHHHHhhhccccccccCc-hHHhhheeeeEEeecccccc-ccCCchhhhHHHHhhcccchhhH--------hhCchh
Confidence            333344666666666553221 13334444466666666665 55666666666666666666654        333455


Q ss_pred             HhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCc
Q 002435          187 VKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLK  266 (922)
Q Consensus       187 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  266 (922)
                      ..++.+|+++.|.+|.+.. .|..+..+.+|+.|+++.|.+. .+|..+..++.++.++.++|....    .++... ++
T Consensus        87 ~~~~~~l~~lnL~~n~l~~-lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~----~lg~~~-ik  159 (1081)
T KOG0618|consen   87 CSNMRNLQYLNLKNNRLQS-LPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQ----RLGQTS-IK  159 (1081)
T ss_pred             hhhhhcchhheeccchhhc-CchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhh----hhcccc-ch
Confidence            5666666666666665443 5666666666666666666665 556666666666666666662211    122222 66


Q ss_pred             EEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCc
Q 002435          267 RLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECK  346 (922)
Q Consensus       267 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  346 (922)
                      .+++..|.+.+.++..+..+..  .|+|.+|.+.   ...+..+.+|+.+....|.+...    --.-++|+.|+.++|.
T Consensus       160 ~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~  230 (1081)
T KOG0618|consen  160 KLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNP  230 (1081)
T ss_pred             hhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceE----EecCcchheeeeccCc
Confidence            6666666666666655555555  5666666655   22345556666666666665421    1123566666666666


Q ss_pred             cCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcc
Q 002435          347 FSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPN  426 (922)
Q Consensus       347 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~  426 (922)
                      ++...+  -....+|++++++.|+++ .+| ++ ...+.+|+.+++.+|++..++...+ ...+|+.+.+..|.+..+|.
T Consensus       231 l~~~~~--~p~p~nl~~~dis~n~l~-~lp-~w-i~~~~nle~l~~n~N~l~~lp~ri~-~~~~L~~l~~~~nel~yip~  304 (1081)
T KOG0618|consen  231 LTTLDV--HPVPLNLQYLDISHNNLS-NLP-EW-IGACANLEALNANHNRLVALPLRIS-RITSLVSLSAAYNELEYIPP  304 (1081)
T ss_pred             ceeecc--ccccccceeeecchhhhh-cch-HH-HHhcccceEecccchhHHhhHHHHh-hhhhHHHHHhhhhhhhhCCC
Confidence            652221  123345666677766666 334 22 2566667777777766655544333 45667777777777777777


Q ss_pred             cccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCC
Q 002435          427 FLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQ  506 (922)
Q Consensus       427 ~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~  506 (922)
                      .....++|++|+|..|++. ..|+.+.......+..|+.+.|++....                                
T Consensus       305 ~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp--------------------------------  351 (1081)
T KOG0618|consen  305 FLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLP--------------------------------  351 (1081)
T ss_pred             cccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccc--------------------------------
Confidence            7777777777777777775 3444332111122344444444332211                                


Q ss_pred             CceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEec
Q 002435          507 TKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDL  586 (922)
Q Consensus       507 l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  586 (922)
                                      ..-....+.|+.|++.+|.++...-..+.++. .|+.|+|++|++.......+.++..|++|+|
T Consensus       352 ----------------~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~-hLKVLhLsyNrL~~fpas~~~kle~LeeL~L  414 (1081)
T KOG0618|consen  352 ----------------SYEENNHAALQELYLANNHLTDSCFPVLVNFK-HLKVLHLSYNRLNSFPASKLRKLEELEELNL  414 (1081)
T ss_pred             ----------------cccchhhHHHHHHHHhcCcccccchhhhcccc-ceeeeeecccccccCCHHHHhchHHhHHHhc
Confidence                            11111134455555555555554444444444 4666666666555444444555556666666


Q ss_pred             CCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCc
Q 002435          587 SDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNR  664 (922)
Q Consensus       587 s~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~  664 (922)
                      |+|+++ .+|.++.++..|++|...+|++. ..| .+..++.|+++|++.|+++...-....  ..++|++||+++|.
T Consensus       415 SGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~--p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  415 SGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL--PSPNLKYLDLSGNT  487 (1081)
T ss_pred             ccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC--CCcccceeeccCCc
Confidence            666665 44555666666666666666655 344 555566666666666665544322221  12556666666665

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=2.5e-33  Score=297.60  Aligned_cols=375  Identities=29%  Similarity=0.393  Sum_probs=216.6

Q ss_pred             ccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHH
Q 002435          108 FKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLV  187 (922)
Q Consensus       108 ~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~  187 (922)
                      +-++..+-.|+++|.|+|+.+|.....++.++.|.|....+ ..+|..++.|.+|++|.+++|++.        .+...+
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L-~~vPeEL~~lqkLEHLs~~HN~L~--------~vhGEL   74 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL-EQVPEELSRLQKLEHLSMAHNQLI--------SVHGEL   74 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh-hhChHHHHHHhhhhhhhhhhhhhH--------hhhhhh
Confidence            34566777888888888888898888999999999988887 678999999999999999998752        223344


Q ss_pred             hcCCCCCEEEcCCCcCC-CCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCc
Q 002435          188 KKLTNLKELALGGVTIS-SPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLK  266 (922)
Q Consensus       188 ~~l~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  266 (922)
                      +.++.|+.+.+..|++. .-+|..+-.+..|+.||||+|++. ..|..+..-+++-.|+||+|+|..+....|.++..|-
T Consensus        75 s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL  153 (1255)
T KOG0444|consen   75 SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL  153 (1255)
T ss_pred             ccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence            55555555555555543 224444555555555555555555 4455555555555555555555433333444455555


Q ss_pred             EEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCc
Q 002435          267 RLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECK  346 (922)
Q Consensus       267 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  346 (922)
                      .|||++|++. .+|..+..+.+|++|+|++|                        .+....-..+..+++|+.|.+++.+
T Consensus       154 fLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~N------------------------PL~hfQLrQLPsmtsL~vLhms~Tq  208 (1255)
T KOG0444|consen  154 FLDLSNNRLE-MLPPQIRRLSMLQTLKLSNN------------------------PLNHFQLRQLPSMTSLSVLHMSNTQ  208 (1255)
T ss_pred             hhccccchhh-hcCHHHHHHhhhhhhhcCCC------------------------hhhHHHHhcCccchhhhhhhccccc
Confidence            5555555554 34444444555555555554                        4432222233345566666666654


Q ss_pred             cC-ccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCc
Q 002435          347 FS-SQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFP  425 (922)
Q Consensus       347 l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp  425 (922)
                      -+ ..+|.++..+.+|..+|++.|++.                                                  .+|
T Consensus       209 RTl~N~Ptsld~l~NL~dvDlS~N~Lp--------------------------------------------------~vP  238 (1255)
T KOG0444|consen  209 RTLDNIPTSLDDLHNLRDVDLSENNLP--------------------------------------------------IVP  238 (1255)
T ss_pred             chhhcCCCchhhhhhhhhccccccCCC--------------------------------------------------cch
Confidence            33 346666767777777777666554                                                  123


Q ss_pred             ccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCC
Q 002435          426 NFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPP  505 (922)
Q Consensus       426 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~  505 (922)
                      +.+.++++|+.|+||+|+|+..-. ...  .                                                 
T Consensus       239 ecly~l~~LrrLNLS~N~iteL~~-~~~--~-------------------------------------------------  266 (1255)
T KOG0444|consen  239 ECLYKLRNLRRLNLSGNKITELNM-TEG--E-------------------------------------------------  266 (1255)
T ss_pred             HHHhhhhhhheeccCcCceeeeec-cHH--H-------------------------------------------------
Confidence            333444445555555554441100 000  1                                                 


Q ss_pred             CCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCccc-CCCcccccCCCCccEE
Q 002435          506 QTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFC-GSIPQTFLSGRSLMMI  584 (922)
Q Consensus       506 ~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L  584 (922)
                                             ..+|+.|++|.|+++ .+|++++.++ .|+.|++.+|+++ .-+|..++.+.+|+++
T Consensus       267 -----------------------W~~lEtLNlSrNQLt-~LP~avcKL~-kL~kLy~n~NkL~FeGiPSGIGKL~~Levf  321 (1255)
T KOG0444|consen  267 -----------------------WENLETLNLSRNQLT-VLPDAVCKLT-KLTKLYANNNKLTFEGIPSGIGKLIQLEVF  321 (1255)
T ss_pred             -----------------------Hhhhhhhccccchhc-cchHHHhhhH-HHHHHHhccCcccccCCccchhhhhhhHHH
Confidence                                   224455555555554 4455555555 4555555555553 2345566666666666


Q ss_pred             ecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCC
Q 002435          585 DLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREP  646 (922)
Q Consensus       585 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~  646 (922)
                      ..++|.+. ..|+.+..|..|+.|.|+.|++. ..|.++.-++.|++|+++.|.---+.|.+
T Consensus       322 ~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP  381 (1255)
T KOG0444|consen  322 HAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKP  381 (1255)
T ss_pred             Hhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCc
Confidence            66666665 56666666666666666666665 45666666666666666666655444443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=1.9e-31  Score=283.37  Aligned_cols=365  Identities=25%  Similarity=0.365  Sum_probs=263.3

Q ss_pred             CCCCCEEEcCCCcCC-CCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEE
Q 002435          190 LTNLKELALGGVTIS-SPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRL  268 (922)
Q Consensus       190 l~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  268 (922)
                      ++-.+-.++++|.++ +..|..+..+++++.|.|...++. .+|+.++.+.+|++|.+++|++.. +-..+..++.|+.+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv   83 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSV   83 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHH
Confidence            445566777888877 456777777888888888777776 677778888888888888887763 33556777778888


Q ss_pred             EcccCCCCC-CchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCcc
Q 002435          269 DISWNELSG-ELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKF  347 (922)
Q Consensus       269 ~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  347 (922)
                      .+..|++.. -+|..+.++..|..|||++|++. ..|..+..-+++-.|+|++|+|..+....|.+++.|-.|||++|++
T Consensus        84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL  162 (1255)
T KOG0444|consen   84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL  162 (1255)
T ss_pred             hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence            888777653 36777777777778888887776 4566676777777777777777643334455667777777777777


Q ss_pred             CccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCC--CCc
Q 002435          348 SSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLN--EFP  425 (922)
Q Consensus       348 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~--~lp  425 (922)
                      . .+|+.+..+..|++|+|++|.+.-    . -+..+|                     .+.+|+.|.+++.+-+  .+|
T Consensus       163 e-~LPPQ~RRL~~LqtL~Ls~NPL~h----f-QLrQLP---------------------smtsL~vLhms~TqRTl~N~P  215 (1255)
T KOG0444|consen  163 E-MLPPQIRRLSMLQTLKLSNNPLNH----F-QLRQLP---------------------SMTSLSVLHMSNTQRTLDNIP  215 (1255)
T ss_pred             h-hcCHHHHHHhhhhhhhcCCChhhH----H-HHhcCc---------------------cchhhhhhhcccccchhhcCC
Confidence            6 455566666677777777665431    0 001111                     2233344444444333  455


Q ss_pred             ccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCC
Q 002435          426 NFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPP  505 (922)
Q Consensus       426 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~  505 (922)
                      ..+..+.+|..+|+|.|.+.                                                            
T Consensus       216 tsld~l~NL~dvDlS~N~Lp------------------------------------------------------------  235 (1255)
T KOG0444|consen  216 TSLDDLHNLRDVDLSENNLP------------------------------------------------------------  235 (1255)
T ss_pred             CchhhhhhhhhccccccCCC------------------------------------------------------------
Confidence            55555555555555555543                                                            


Q ss_pred             CCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEe
Q 002435          506 QTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMID  585 (922)
Q Consensus       506 ~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  585 (922)
                                    .+|..+.+ +.+|+.|+||+|.|+ .+..+...+. +|++|++|+|+++ .+|+++..++.|+.|.
T Consensus       236 --------------~vPecly~-l~~LrrLNLS~N~it-eL~~~~~~W~-~lEtLNlSrNQLt-~LP~avcKL~kL~kLy  297 (1255)
T KOG0444|consen  236 --------------IVPECLYK-LRNLRRLNLSGNKIT-ELNMTEGEWE-NLETLNLSRNQLT-VLPDAVCKLTKLTKLY  297 (1255)
T ss_pred             --------------cchHHHhh-hhhhheeccCcCcee-eeeccHHHHh-hhhhhccccchhc-cchHHHhhhHHHHHHH
Confidence                          34455555 677888888888887 3445666676 7999999999998 8899999999999999


Q ss_pred             cCCCcccc-cCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCc
Q 002435          586 LSDNLLQG-RIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNR  664 (922)
Q Consensus       586 Ls~N~l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~  664 (922)
                      +.+|+++- -+|+.++.+.+|+++..++|++. ..|..+..|..|+.|.|++|++... |+.+  .-++.|..||+..|+
T Consensus       298 ~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTL-PeaI--HlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  298 ANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITL-PEAI--HLLPDLKVLDLRENP  373 (1255)
T ss_pred             hccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeec-hhhh--hhcCCcceeeccCCc
Confidence            99999863 48999999999999999999998 8999999999999999999999865 4444  447899999999997


Q ss_pred             CC
Q 002435          665 FT  666 (922)
Q Consensus       665 l~  666 (922)
                      =-
T Consensus       374 nL  375 (1255)
T KOG0444|consen  374 NL  375 (1255)
T ss_pred             Cc
Confidence            43

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.92  E-value=3.4e-27  Score=239.81  Aligned_cols=302  Identities=18%  Similarity=0.205  Sum_probs=176.6

Q ss_pred             CCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccC-CCCcCccchhhhhhccCCcceE
Q 002435          312 RLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSH-NNFSGPIDLDMFLVNFKHLEHL  390 (922)
Q Consensus       312 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~l~~L~~L  390 (922)
                      .-.+++|..|.|+...+..|+.+++|+.|||++|+|+.+-|.+|.+++++.+|-+.+ |+++ .++...| .++..|+.|
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F-~gL~slqrL  145 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAF-GGLSSLQRL  145 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHh-hhHHHHHHH
Confidence            344555556665555555555556666666666666555555555555555544444 4444 4444444 555555555


Q ss_pred             eCcCccccccccccccCCCCccEEEecCCCCCCCcc-cccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCc
Q 002435          391 SLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPN-FLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNF  469 (922)
Q Consensus       391 ~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~-~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~  469 (922)
                      .+.-|++.-+...+|..++++..|.+.+|.+..++. .+..+                          ..++.+.+..|.
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l--------------------------~~i~tlhlA~np  199 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGL--------------------------AAIKTLHLAQNP  199 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccch--------------------------hccchHhhhcCc
Confidence            555555555555555555555555555554444443 33333                          444444444444


Q ss_pred             cccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCch
Q 002435          470 LIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQC  549 (922)
Q Consensus       470 l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~  549 (922)
                      +......++...        +                     +.-+      |..... .....-..+.+.++..+-+..
T Consensus       200 ~icdCnL~wla~--------~---------------------~a~~------~ietsg-arc~~p~rl~~~Ri~q~~a~k  243 (498)
T KOG4237|consen  200 FICDCNLPWLAD--------D---------------------LAMN------PIETSG-ARCVSPYRLYYKRINQEDARK  243 (498)
T ss_pred             cccccccchhhh--------H---------------------Hhhc------hhhccc-ceecchHHHHHHHhcccchhh
Confidence            322111110000        0                     0000      000000 111222233344444443444


Q ss_pred             hhhccCcccEEEcCCCcccCCCc-ccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCC
Q 002435          550 LDNFSDHLSILDLQHNKFCGSIP-QTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRE  628 (922)
Q Consensus       550 l~~l~~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  628 (922)
                      |....+.+..-..+.+...++.| ..|..+++|++|+|++|+|+++-+.+|.++..++.|.|..|+|...-...|.++..
T Consensus       244 f~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~  323 (498)
T KOG4237|consen  244 FLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSG  323 (498)
T ss_pred             hhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcccc
Confidence            43322222222223333333444 46888999999999999999998999999999999999999998877888999999


Q ss_pred             CCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhcccc
Q 002435          629 LNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNA  679 (922)
Q Consensus       629 L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~  679 (922)
                      |++|+|.+|+|+...|..+  ..+.+|..|+|-.|+|.|.+-..|+..|-.
T Consensus       324 L~tL~L~~N~it~~~~~aF--~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr  372 (498)
T KOG4237|consen  324 LKTLSLYDNQITTVAPGAF--QTLFSLSTLNLLSNPFNCNCRLAWLGEWLR  372 (498)
T ss_pred             ceeeeecCCeeEEEecccc--cccceeeeeehccCcccCccchHHHHHHHh
Confidence            9999999999998877665  567889999999999999998888887743

>PLN03210 Resistant to P

Probab=99.89  E-value=1e-21  Score=247.07  Aligned_cols=359  Identities=23%  Similarity=0.272  Sum_probs=276.1

Q ss_pred             CcEEEEECCCCCCCCcccCccccccCCCCCeeeCCCCCCCC-----CCCCccccCCC-CCCEEECCCCCCCCcCchhhcC
Q 002435           85 GHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFIC-----SEIPPEIINLS-RLSYLNLSSAGFFGQIPSEILE  158 (922)
Q Consensus        85 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~-----~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~  158 (922)
                      .+|+.+.+.-..+....-...+|..+++|+.|.+..+....     ..+|..+..++ +|+.|++.++.+ ..+|..+ .
T Consensus       532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l-~~lP~~f-~  609 (1153)
T PLN03210        532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL-RCMPSNF-R  609 (1153)
T ss_pred             ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC-CCCCCcC-C
Confidence            45666555433333221122468889999999997654321     13677777764 599999999987 6778777 5


Q ss_pred             CCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCC
Q 002435          159 LSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNL  238 (922)
Q Consensus       159 l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l  238 (922)
                      ..+|++|++++|++.        .++..+..+++|+.|+++++.....+|. ++.+++|++|++++|.....+|..++++
T Consensus       610 ~~~L~~L~L~~s~l~--------~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L  680 (1153)
T PLN03210        610 PENLVKLQMQGSKLE--------KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYL  680 (1153)
T ss_pred             ccCCcEEECcCcccc--------ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhcc
Confidence            789999999999863        3445567899999999999876566664 8889999999999998777899999999


Q ss_pred             CCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEe
Q 002435          239 TKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSL  318 (922)
Q Consensus       239 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  318 (922)
                      ++|+.|++++|...+.+|..+ ++++|+.|++++|.....+|..   .++|++|++++|.+. .+|..+ .+++|+.|.+
T Consensus       681 ~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l  754 (1153)
T PLN03210        681 NKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELIL  754 (1153)
T ss_pred             CCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccc
Confidence            999999999987666777665 7899999999999766666643   468999999999987 455444 5788888888


Q ss_pred             eccCCC-------CcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEe
Q 002435          319 ASNDFS-------GELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLS  391 (922)
Q Consensus       319 ~~n~l~-------~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~  391 (922)
                      .++...       ...+......++|++|++++|...+.+|..++++++|+.|++++|...+.+|..   ..+++|+.|+
T Consensus       755 ~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~  831 (1153)
T PLN03210        755 CEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG---INLESLESLD  831 (1153)
T ss_pred             cccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC---CCccccCEEE
Confidence            774421       111222334578999999999888889999999999999999998766566644   2689999999


Q ss_pred             CcCccc-cccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCc
Q 002435          392 LSSNRL-SLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNF  469 (922)
Q Consensus       392 Ls~n~l-~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~  469 (922)
                      +++|.. ..++.    ...+++.|++++|.++.+|.++..+++|+.|++++|.-...+|....  .+++|+.+++++|.
T Consensus       832 Ls~c~~L~~~p~----~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~--~L~~L~~L~l~~C~  904 (1153)
T PLN03210        832 LSGCSRLRTFPD----ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS--KLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCCccccccc----cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccc--cccCCCeeecCCCc
Confidence            999853 33222    24689999999999999999999999999999999665555666555  77888888888774

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.88  E-value=5.2e-21  Score=240.72  Aligned_cols=345  Identities=21%  Similarity=0.282  Sum_probs=200.5

Q ss_pred             cccCCCCCCCEEeCcCCC------CCCCcccccCCCC-CCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcc
Q 002435          233 SLLGNLTKLMYLDLSFNN------LLGELPTSIGNLD-CLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPH  305 (922)
Q Consensus       233 ~~l~~l~~L~~L~Ls~n~------l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  305 (922)
                      .+|.+|++|+.|.+..+.      +...+|+.+..++ +|+.|++.++.+. .+|..+ ...+|++|++.+|.+. ..+.
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~  628 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD  628 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence            445666666666665442      2223455555543 4777777777665 556555 4567777777777765 3455


Q ss_pred             cccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccC
Q 002435          306 SMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFK  385 (922)
Q Consensus       306 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~  385 (922)
                      .+..+++|+.++|+++...+.+|. +..+++|++|++++|.....+|..+..+++|+.|++++|...+.+|..   .+++
T Consensus       629 ~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~---i~l~  704 (1153)
T PLN03210        629 GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG---INLK  704 (1153)
T ss_pred             ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc---CCCC
Confidence            566777777777777654445554 666777777777777666667777777777888888776554455532   2466


Q ss_pred             CcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEc
Q 002435          386 HLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNL  465 (922)
Q Consensus       386 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L  465 (922)
                      +|+.|++++|......+.   ...+|+.|++++|.+..+|..+ .+++|++|++.++...                    
T Consensus       705 sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~--------------------  760 (1153)
T PLN03210        705 SLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSE--------------------  760 (1153)
T ss_pred             CCCEEeCCCCCCcccccc---ccCCcCeeecCCCccccccccc-cccccccccccccchh--------------------
Confidence            677777766642211111   1234455555555555444432 2344444444432211                    


Q ss_pred             cCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCC
Q 002435          466 SHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGL  545 (922)
Q Consensus       466 ~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~  545 (922)
                            ......                ..+.......+++++.|++++|...+.+|..+.. +++|+.|++++|..-+.
T Consensus       761 ------~l~~~~----------------~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~-L~~L~~L~Ls~C~~L~~  817 (1153)
T PLN03210        761 ------KLWERV----------------QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQN-LHKLEHLEIENCINLET  817 (1153)
T ss_pred             ------hccccc----------------cccchhhhhccccchheeCCCCCCccccChhhhC-CCCCCEEECCCCCCcCe
Confidence                  000000                0000000112345666666666666667776665 77777777777654445


Q ss_pred             CCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCC-cCccCcchhhc
Q 002435          546 LPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNN-QISGTFPSWLG  624 (922)
Q Consensus       546 ~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N-~l~~~~p~~~~  624 (922)
                      +|..+ .++ +|+.|++++|..-..+|..   ..+|+.|+|++|.++ .+|.++..+++|+.|++++| ++. .+|..+.
T Consensus       818 LP~~~-~L~-sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~  890 (1153)
T PLN03210        818 LPTGI-NLE-SLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNIS  890 (1153)
T ss_pred             eCCCC-Ccc-ccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccc
Confidence            66554 344 6777777776544444432   356777777777776 45667777777777777774 344 4555666


Q ss_pred             CCCCCCEEEcCCCc
Q 002435          625 TLRELNVLILKSNK  638 (922)
Q Consensus       625 ~l~~L~~L~L~~N~  638 (922)
                      .+++|+.+++++|.
T Consensus       891 ~L~~L~~L~l~~C~  904 (1153)
T PLN03210        891 KLKHLETVDFSDCG  904 (1153)
T ss_pred             cccCCCeeecCCCc
Confidence            67777777776664

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.2e-21  Score=227.85  Aligned_cols=80  Identities=28%  Similarity=0.412  Sum_probs=46.1

Q ss_pred             ceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccC
Q 002435          731 LTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSN  810 (922)
Q Consensus       731 l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~  810 (922)
                      |+.|+|++|+|++ +|...   ++|+.|++++|+|++ +|...   ..|+.|+|++|+|+ .+|..+.+++.|+.|++++
T Consensus       384 L~~LdLs~N~Lt~-LP~l~---s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~  454 (788)
T PRK15387        384 LKELIVSGNRLTS-LPVLP---SELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG  454 (788)
T ss_pred             cceEEecCCcccC-CCCcc---cCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCC
Confidence            4556666666653 44322   355666666666664 44322   34556666666666 4566666666666666666


Q ss_pred             CccccCCCC
Q 002435          811 NNLTGPIPQ  819 (922)
Q Consensus       811 N~lsg~iP~  819 (922)
                      |+|+|.+|.
T Consensus       455 N~Ls~~~~~  463 (788)
T PRK15387        455 NPLSERTLQ  463 (788)
T ss_pred             CCCCchHHH
Confidence            666666554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=1.3e-24  Score=221.15  Aligned_cols=276  Identities=21%  Similarity=0.208  Sum_probs=182.2

Q ss_pred             CEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcC-CCCCCCcccccCCCCCCcEEEccc
Q 002435          194 KELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSF-NNLLGELPTSIGNLDCLKRLDISW  272 (922)
Q Consensus       194 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~L~~  272 (922)
                      .+++|..|+|+...+.+|+.+++|+.|||++|+|+.+-|.+|.++++|..|-+-+ |+|+......|+++..|+.|.+.-
T Consensus        70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa  149 (498)
T KOG4237|consen   70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA  149 (498)
T ss_pred             eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence            3555666666666677777777888888888887777777777777776665544 777766667777788888888777


Q ss_pred             CCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCC------------cccccccCCCCCceE
Q 002435          273 NELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSG------------ELPASFGNLRSLEGL  340 (922)
Q Consensus       273 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~------------~~p~~l~~l~~L~~L  340 (922)
                      |++.-...+.|..+++|..|.+.+|.+....-..|..+..++.+.+..|.+..            ..|..++...-..-.
T Consensus       150 n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~  229 (498)
T KOG4237|consen  150 NHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPY  229 (498)
T ss_pred             hhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchH
Confidence            77776667777778888888888877775544567777777777777776321            112222222222222


Q ss_pred             ecCCCccCccCchhhcC-CCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCC
Q 002435          341 DISECKFSSQIPSSLRN-LAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSC  419 (922)
Q Consensus       341 ~Ls~n~l~~~~~~~l~~-l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~  419 (922)
                      .+.+.++...-+..+.. +..+..=..+.+...+.-|...| ..+++|+.|++++|+++.+.+.+|.....++.|.|..|
T Consensus       230 rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf-~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N  308 (498)
T KOG4237|consen  230 RLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCF-KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN  308 (498)
T ss_pred             HHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHH-hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc
Confidence            33333333222221111 11111111222333334444444 78888888888888888888888888888888888888


Q ss_pred             CCCCCcc-cccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCcccc
Q 002435          420 NLNEFPN-FLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIG  472 (922)
Q Consensus       420 ~l~~lp~-~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~  472 (922)
                      ++..+.. .+..+..|+.|+|++|+|+...|..|.  .+..|.+|++-.|++..
T Consensus       309 ~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~--~~~~l~~l~l~~Np~~C  360 (498)
T KOG4237|consen  309 KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ--TLFSLSTLNLLSNPFNC  360 (498)
T ss_pred             hHHHHHHHhhhccccceeeeecCCeeEEEeccccc--ccceeeeeehccCcccC
Confidence            8876654 567788888888888888877777776  67788888888887654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=2.6e-21  Score=224.99  Aligned_cols=186  Identities=27%  Similarity=0.363  Sum_probs=117.2

Q ss_pred             ccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEEC
Q 002435          531 SLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDL  610 (922)
Q Consensus       531 ~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  610 (922)
                      +|+.|++++|+++. +|..    +++|+.|++++|++++ +|..   ..+|+.|++++|++++ +|..   ..+|++|+|
T Consensus       283 ~L~~L~Ls~N~Lt~-LP~~----p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdL  349 (788)
T PRK15387        283 GLCKLWIFGNQLTS-LPVL----PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSV  349 (788)
T ss_pred             hcCEEECcCCcccc-cccc----ccccceeECCCCcccc-CCCC---cccccccccccCcccc-cccc---ccccceEec
Confidence            45556666666653 3321    1256666666666664 2321   2345666666666663 3321   135677777


Q ss_pred             CCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccccc
Q 002435          611 GNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRY  690 (922)
Q Consensus       611 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~  690 (922)
                      ++|+|++ +|..   .++|+.|++++|++++. |..     ..+|+.|++++|++++ +|..                  
T Consensus       350 S~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~L-P~l-----~~~L~~LdLs~N~Lt~-LP~l------------------  400 (788)
T PRK15387        350 SDNQLAS-LPTL---PSELYKLWAYNNRLTSL-PAL-----PSGLKELIVSGNRLTS-LPVL------------------  400 (788)
T ss_pred             CCCccCC-CCCC---CcccceehhhccccccC-ccc-----ccccceEEecCCcccC-CCCc------------------
Confidence            7777764 3332   24566677777777653 321     2457788888887762 3421                  


Q ss_pred             cccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccccccCC
Q 002435          691 MEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHIL  770 (922)
Q Consensus       691 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip  770 (922)
                                                           ++.|+.|++++|+|++ +|...   .+|+.|+|++|+|+ .+|
T Consensus       401 -------------------------------------~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP  438 (788)
T PRK15387        401 -------------------------------------PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLP  438 (788)
T ss_pred             -------------------------------------ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccC
Confidence                                                 2346778888888874 66533   45778888888888 578


Q ss_pred             ccccCCCCCCEEeCCCCcCcccCcccccCC
Q 002435          771 SCLGNLTGLESLDLSNNKFSGQIPQQLVDL  800 (922)
Q Consensus       771 ~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L  800 (922)
                      ..+.+++.|+.|+|++|.|+|.+|..+..+
T Consensus       439 ~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        439 ESLIHLSSETTVNLEGNPLSERTLQALREI  468 (788)
T ss_pred             hHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence            888888889999999999988888877544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=2.2e-19  Score=210.69  Aligned_cols=243  Identities=23%  Similarity=0.358  Sum_probs=151.6

Q ss_pred             eEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcc
Q 002435          488 TLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKF  567 (922)
Q Consensus       488 ~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l  567 (922)
                      .|+++++.++..+...++.++.|++++|.++ .+|..++   ++|+.|++++|+++ .+|..+.   .+|+.|+|++|.+
T Consensus       182 ~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L  253 (754)
T PRK15370        182 ELRLKILGLTTIPACIPEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP---DTIQEMELSINRI  253 (754)
T ss_pred             EEEeCCCCcCcCCcccccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh---ccccEEECcCCcc
Confidence            4444444444433334456677777777766 4565543   36777777777776 3455443   2577777777777


Q ss_pred             cCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCC
Q 002435          568 CGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPN  647 (922)
Q Consensus       568 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~  647 (922)
                      + .+|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|++++|++++ +|..+.  ++|+.|++++|+++.. |...
T Consensus       254 ~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~L-P~~l  323 (754)
T PRK15370        254 T-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTAL-PETL  323 (754)
T ss_pred             C-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccC-Cccc
Confidence            6 4455443  46777777777777 3455443  467777777777774 343332  3577777777777653 3222


Q ss_pred             CCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccccc
Q 002435          648 TGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKV  727 (922)
Q Consensus       648 ~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  727 (922)
                          .++|+.|++++|.+++ +|..+                                                      
T Consensus       324 ----~~sL~~L~Ls~N~Lt~-LP~~l------------------------------------------------------  344 (754)
T PRK15370        324 ----PPGLKTLEAGENALTS-LPASL------------------------------------------------------  344 (754)
T ss_pred             ----cccceeccccCCcccc-CChhh------------------------------------------------------
Confidence                2567777777777663 44221                                                      


Q ss_pred             cccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCccc----ccCCCCC
Q 002435          728 PNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQ----LVDLTFL  803 (922)
Q Consensus       728 ~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~----l~~L~~L  803 (922)
                      ++.|+.|+|++|+|+ .+|..+.  +.|+.|+|++|+|++ +|..+.  ..|+.|++++|+|++ +|..    +..++.+
T Consensus       345 ~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l  417 (754)
T PRK15370        345 PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLVR-LPESLPHFRGEGPQP  417 (754)
T ss_pred             cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCccc-CchhHHHHhhcCCCc
Confidence            235777788888877 4666553  577888888888874 455444  267778888888774 3443    3445777


Q ss_pred             CeEeccCCccc
Q 002435          804 EFFNVSNNNLT  814 (922)
Q Consensus       804 ~~L~ls~N~ls  814 (922)
                      ..+++.+|+++
T Consensus       418 ~~L~L~~Npls  428 (754)
T PRK15370        418 TRIIVEYNPFS  428 (754)
T ss_pred             cEEEeeCCCcc
Confidence            78888888776

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=1e-18  Score=205.18  Aligned_cols=54  Identities=22%  Similarity=0.267  Sum_probs=26.7

Q ss_pred             ccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccc
Q 002435          411 FNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLI  471 (922)
Q Consensus       411 L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~  471 (922)
                      ...|++++++++.+|..+  .+.|+.|++++|+++ .+|..+.    .+|+.|++++|.++
T Consensus       180 ~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~----~nL~~L~Ls~N~Lt  233 (754)
T PRK15370        180 KTELRLKILGLTTIPACI--PEQITTLILDNNELK-SLPENLQ----GNIKTLYANSNQLT  233 (754)
T ss_pred             ceEEEeCCCCcCcCCccc--ccCCcEEEecCCCCC-cCChhhc----cCCCEEECCCCccc
Confidence            344555555555555433  234666666666665 3343321    34555555555443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=7.7e-19  Score=192.43  Aligned_cols=256  Identities=22%  Similarity=0.209  Sum_probs=129.3

Q ss_pred             eeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCc----CchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCC
Q 002435          116 LDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQ----IPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLT  191 (922)
Q Consensus       116 L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~  191 (922)
                      |+|+.+.+.+...+..+..+++|++|+++++.+++.    ++..+...++|++|+++++.+... ......++..+..++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~-~~~~~~~~~~l~~~~   81 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRI-PRGLQSLLQGLTKGC   81 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCc-chHHHHHHHHHHhcC
Confidence            444455544343444455555566666666655332    344444555566666666543210 000122334555566


Q ss_pred             CCCEEEcCCCcCCCCCchhccCCCC---CCEEeccCccCCc----cCccccCCC-CCCCEEeCcCCCCCCC----ccccc
Q 002435          192 NLKELALGGVTISSPIPHSLANLSS---LTLLSLSGCELRG----RIPSLLGNL-TKLMYLDLSFNNLLGE----LPTSI  259 (922)
Q Consensus       192 ~L~~L~L~~n~~~~~~~~~l~~l~~---L~~L~Ls~n~l~~----~~~~~l~~l-~~L~~L~Ls~n~l~~~----~~~~l  259 (922)
                      +|++|++++|.+.+..+..+..+..   |++|++++|++.+    .+...+..+ ++|+.|++++|.+++.    ++..+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            6666666666665544444444433   6666666666652    222334445 6666666666666532    22344


Q ss_pred             CCCCCCcEEEcccCCCCCC----chhhhhCCCCCCEEEccCCCCCCCCc----ccccCCCCCcEEEeeccCCCCcccccc
Q 002435          260 GNLDCLKRLDISWNELSGE----LPASIGNLASLEQLELSLNRFRGKTP----HSMGNFTRLYWLSLASNDFSGELPASF  331 (922)
Q Consensus       260 ~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~p~~l  331 (922)
                      ..+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+...    ..+..+++|++|++++|.+++.....+
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l  241 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL  241 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence            5556666666666666532    23334445566666666666553222    223344555555555555543211111


Q ss_pred             c-----CCCCCceEecCCCccCc----cCchhhcCCCCccEEEccCCCCc
Q 002435          332 G-----NLRSLEGLDISECKFSS----QIPSSLRNLAQLKFLEFSHNNFS  372 (922)
Q Consensus       332 ~-----~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~  372 (922)
                      .     ..+.|++|++++|.++.    .+...+..+++|+++++++|.+.
T Consensus       242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            1     12455566665555541    12233344455555555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=2.2e-18  Score=188.89  Aligned_cols=230  Identities=23%  Similarity=0.266  Sum_probs=130.9

Q ss_pred             EEECCCCCCC-CcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCC------CCchhcc
Q 002435          140 YLNLSSAGFF-GQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISS------PIPHSLA  212 (922)
Q Consensus       140 ~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~------~~~~~l~  212 (922)
                      .|+|..+.+. ...+..+..+++|++|+++++.+...   ....++..+...+++++++++++.+.+      .++..+.
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~---~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~   78 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEE---AAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT   78 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHH---HHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH
Confidence            4677777776 34455566777889999988875321   113456667777788888888877652      2234566


Q ss_pred             CCCCCCEEeccCccCCccCccccCCCCC---CCEEeCcCCCCCCC----cccccCCC-CCCcEEEcccCCCCCC----ch
Q 002435          213 NLSSLTLLSLSGCELRGRIPSLLGNLTK---LMYLDLSFNNLLGE----LPTSIGNL-DCLKRLDISWNELSGE----LP  280 (922)
Q Consensus       213 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~---L~~L~Ls~n~l~~~----~~~~l~~l-~~L~~L~L~~n~l~~~----~~  280 (922)
                      .+++|++|++++|.+.+..+..+..+.+   |++|++++|++++.    +...+..+ ++|+.|++++|.+++.    ++
T Consensus        79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~  158 (319)
T cd00116          79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA  158 (319)
T ss_pred             hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence            6777777777777776544444444433   77777777766531    22334455 6677777777776632    23


Q ss_pred             hhhhCCCCCCEEEccCCCCCCCC----cccccCCCCCcEEEeeccCCCCc----ccccccCCCCCceEecCCCccCccCc
Q 002435          281 ASIGNLASLEQLELSLNRFRGKT----PHSMGNFTRLYWLSLASNDFSGE----LPASFGNLRSLEGLDISECKFSSQIP  352 (922)
Q Consensus       281 ~~l~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~~  352 (922)
                      ..+..+++|++|++++|.+++..    +..+..+++|++|++++|.+.+.    ++..+..+++|++|++++|.+++...
T Consensus       159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~  238 (319)
T cd00116         159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA  238 (319)
T ss_pred             HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence            34455566666666666665321    12233445666666666655432    22233445555555555555553221


Q ss_pred             hhhc-----CCCCccEEEccCCCCc
Q 002435          353 SSLR-----NLAQLKFLEFSHNNFS  372 (922)
Q Consensus       353 ~~l~-----~l~~L~~L~L~~n~l~  372 (922)
                      ..+.     ..+.|+.|++++|.++
T Consensus       239 ~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         239 AALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHHHHHHhccCCCceEEEccCCCCC
Confidence            1111     1245555555555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03150 hypothetical protein; Provisional

Probab=99.64  E-value=4.9e-16  Score=182.43  Aligned_cols=118  Identities=39%  Similarity=0.675  Sum_probs=105.6

Q ss_pred             cceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEecc
Q 002435          730 FLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVS  809 (922)
Q Consensus       730 ~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls  809 (922)
                      .++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..+++|++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccCCCCCCC--CCCCCccccCCCcCCCCCCCCCCCC
Q 002435          810 NNNLTGPIPQGNQ--FPTFDKTSFNGNLGLCGKPLPKECE  847 (922)
Q Consensus       810 ~N~lsg~iP~~~~--~~~~~~~s~~gn~~lcg~~~~~~c~  847 (922)
                      +|+++|.+|....  +.......+.+|+++||.|....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            9999999997521  2233456789999999977555563

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.57  E-value=3.8e-17  Score=147.95  Aligned_cols=158  Identities=31%  Similarity=0.507  Sum_probs=103.5

Q ss_pred             ccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhH
Q 002435          106 GLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGN  185 (922)
Q Consensus       106 ~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~  185 (922)
                      .+..+.+.+.|.||.|+++  .+|+.|..+.+|++|++++|++ ..+|.+++.+++|+.|+++-|++             
T Consensus        28 gLf~~s~ITrLtLSHNKl~--~vppnia~l~nlevln~~nnqi-e~lp~~issl~klr~lnvgmnrl-------------   91 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLT--VVPPNIAELKNLEVLNLSNNQI-EELPTSISSLPKLRILNVGMNRL-------------   91 (264)
T ss_pred             cccchhhhhhhhcccCcee--ecCCcHHHhhhhhhhhcccchh-hhcChhhhhchhhhheecchhhh-------------
Confidence            4556666777777777764  2566666777777777776666 55666666666666666666552             


Q ss_pred             HHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCC-ccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCC
Q 002435          186 LVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELR-GRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDC  264 (922)
Q Consensus       186 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  264 (922)
                                         ...|..|+.++.|+.|||.+|.+. ..+|..|..++.|+.|+|+.|.+. .+|..++++++
T Consensus        92 -------------------~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~  151 (264)
T KOG0617|consen   92 -------------------NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTN  151 (264)
T ss_pred             -------------------hcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcc
Confidence                               124666777777777777777665 345666666777777777777765 56666777777


Q ss_pred             CcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCC
Q 002435          265 LKRLDISWNELSGELPASIGNLASLEQLELSLNRFR  300 (922)
Q Consensus       265 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  300 (922)
                      |+.|.+..|.+. .+|..++.++.|++|.+.+|+++
T Consensus       152 lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  152 LQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             eeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence            777777776665 45666666666666666666665

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.55  E-value=7.4e-17  Score=146.10  Aligned_cols=159  Identities=31%  Similarity=0.554  Sum_probs=98.5

Q ss_pred             CCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEccc
Q 002435          193 LKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISW  272 (922)
Q Consensus       193 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~  272 (922)
                      +..|.+++|+++. +|..++.+.+|+.|++++|++. .+|..++.+++|+.|+++-|++. ..|..|+.++.|+.||+.+
T Consensus        35 ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlty  111 (264)
T KOG0617|consen   35 ITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTY  111 (264)
T ss_pred             hhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccc
Confidence            3334444444433 3445666666666666666666 45666666666666666666665 5566666666666666666


Q ss_pred             CCCCC-CchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccC
Q 002435          273 NELSG-ELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQI  351 (922)
Q Consensus       273 n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  351 (922)
                      |++.. .+|..|..++.|+.|.|++|.+. .+|..++++++|+.|.+.+|.+. .+|..++.++.|++|.+.+|+++ .+
T Consensus       112 nnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vl  188 (264)
T KOG0617|consen  112 NNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VL  188 (264)
T ss_pred             cccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ec
Confidence            66643 35666666666666666666665 55566666666666666666655 56666666667777777777666 34


Q ss_pred             chhhcC
Q 002435          352 PSSLRN  357 (922)
Q Consensus       352 ~~~l~~  357 (922)
                      |+.++.
T Consensus       189 ppel~~  194 (264)
T KOG0617|consen  189 PPELAN  194 (264)
T ss_pred             Chhhhh
Confidence            444444

>PLN03150 hypothetical protein; Provisional

Probab=99.44  E-value=6.9e-13  Score=156.03  Aligned_cols=127  Identities=33%  Similarity=0.486  Sum_probs=82.4

Q ss_pred             CCCCHHHHHHHHHHhhcCCcCCCCCcccccCCCCCCCCCCCCCCCCCCC----ccccceEecCC--C--CcEEEEECCCC
Q 002435           24 PLCHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDC----CLWDGVECNEN--T--GHVIKLDLSNS   95 (922)
Q Consensus        24 ~~~~~~~~~all~~k~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~----c~w~gv~c~~~--~--~~v~~L~L~~~   95 (922)
                      ..+.++|.+||+++|+.+..+.              ..+|..    ..|    |.|.||.|...  .  ..|+.|+|+++
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~--------------~~~W~g----~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n  428 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPL--------------RFGWNG----DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ  428 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCcc--------------cCCCCC----CCCCCcccccccceeeccCCCCceEEEEEECCCC
Confidence            4567789999999999886532              136753    233    27999999532  1  24888888888


Q ss_pred             CCCCcccCccccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCC
Q 002435           96 CLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNS  171 (922)
Q Consensus        96 ~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~  171 (922)
                      .+.|.++.  .+..+++|+.|+|++|.+.+. +|+.++.+++|++|+|++|.+.|.+|..++++++|++|+|++|.
T Consensus       429 ~L~g~ip~--~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~  501 (623)
T PLN03150        429 GLRGFIPN--DISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS  501 (623)
T ss_pred             CccccCCH--HHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence            88776554  566666666666666666544 55556666666666666666666666555555555555555554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.10  E-value=1.3e-11  Score=125.59  Aligned_cols=192  Identities=20%  Similarity=0.251  Sum_probs=90.4

Q ss_pred             cCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchh-------------ccCCCCCCEEecc
Q 002435          157 LELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHS-------------LANLSSLTLLSLS  223 (922)
Q Consensus       157 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~-------------l~~l~~L~~L~Ls  223 (922)
                      ..+++|++||||.|-+..-.   ...+...+..++.|++|.|.+|.+.-..-..             .+.-+.|+++...
T Consensus        89 ~~~~~L~~ldLSDNA~G~~g---~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~  165 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNAFGPKG---IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG  165 (382)
T ss_pred             hcCCceeEeeccccccCccc---hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence            34556666666666532111   1233345566666666666666654221111             2223445555555


Q ss_pred             CccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCC----CchhhhhCCCCCCEEEccCCCC
Q 002435          224 GCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSG----ELPASIGNLASLEQLELSLNRF  299 (922)
Q Consensus       224 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l  299 (922)
                      .|++...-..                    .+...|...+.|+.+.+..|.|..    .+...+..+++|+.|||.+|.+
T Consensus       166 rNrlen~ga~--------------------~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtf  225 (382)
T KOG1909|consen  166 RNRLENGGAT--------------------ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTF  225 (382)
T ss_pred             ccccccccHH--------------------HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchh
Confidence            5544321110                    011223334444444444444321    1223344555555555555554


Q ss_pred             CCCC----cccccCCCCCcEEEeeccCCCCccccc----c-cCCCCCceEecCCCccCcc----CchhhcCCCCccEEEc
Q 002435          300 RGKT----PHSMGNFTRLYWLSLASNDFSGELPAS----F-GNLRSLEGLDISECKFSSQ----IPSSLRNLAQLKFLEF  366 (922)
Q Consensus       300 ~~~~----~~~l~~l~~L~~L~L~~n~l~~~~p~~----l-~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L  366 (922)
                      +...    ...+..+++|+.+++++|.+...-...    + ...|+|+.|.+.+|.++..    +...+...+.|..|++
T Consensus       226 t~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnL  305 (382)
T KOG1909|consen  226 TLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNL  305 (382)
T ss_pred             hhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcC
Confidence            4221    123344455555555555554322111    1 1246677777777766532    2223445677777777


Q ss_pred             cCCCC
Q 002435          367 SHNNF  371 (922)
Q Consensus       367 ~~n~l  371 (922)
                      ++|.+
T Consensus       306 ngN~l  310 (382)
T KOG1909|consen  306 NGNRL  310 (382)
T ss_pred             Ccccc
Confidence            77777

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.09  E-value=1.3e-10  Score=131.05  Aligned_cols=179  Identities=36%  Similarity=0.479  Sum_probs=99.1

Q ss_pred             CCccEEecCCCcccccCCccccCCC-CCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccE
Q 002435          579 RSLMMIDLSDNLLQGRIPRSLVNCS-SLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRI  657 (922)
Q Consensus       579 ~~L~~L~Ls~N~l~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~  657 (922)
                      +.++.|++.+|.++ .++....... +|+.|++++|++. .+|..++.+++|+.|++++|++....+..   ...+.|+.
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~---~~~~~L~~  190 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLL---SNLSNLNN  190 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhh---hhhhhhhh
Confidence            44555555555554 2333333332 5555555555555 23344555555555555555555443221   13455666


Q ss_pred             EEccCCcCCCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEec
Q 002435          658 IDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILS  737 (922)
Q Consensus       658 LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls  737 (922)
                      |++++|++. .+|... .                                                   .+..++.|+++
T Consensus       191 L~ls~N~i~-~l~~~~-~---------------------------------------------------~~~~L~~l~~~  217 (394)
T COG4886         191 LDLSGNKIS-DLPPEI-E---------------------------------------------------LLSALEELDLS  217 (394)
T ss_pred             eeccCCccc-cCchhh-h---------------------------------------------------hhhhhhhhhhc
Confidence            666666665 333220 0                                                   01235555666


Q ss_pred             cccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCC
Q 002435          738 SNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPI  817 (922)
Q Consensus       738 ~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~i  817 (922)
                      +|.+. .++..+.++..+..|.+++|++... +..++.+..++.|++++|.++...+  ++.+..|+.|++++|.++...
T Consensus       218 ~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~  293 (394)
T COG4886         218 NNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNAL  293 (394)
T ss_pred             CCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceecccccccccccc--ccccCccCEEeccCccccccc
Confidence            66433 3455566666666677777776643 5566667777777777777775433  667777777777777777666


Q ss_pred             CC
Q 002435          818 PQ  819 (922)
Q Consensus       818 P~  819 (922)
                      |.
T Consensus       294 ~~  295 (394)
T COG4886         294 PL  295 (394)
T ss_pred             hh
Confidence            54

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.08  E-value=5.4e-11  Score=121.19  Aligned_cols=247  Identities=23%  Similarity=0.264  Sum_probs=129.3

Q ss_pred             ccccCCCCCCEEECCCCCCCCc----CchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCC
Q 002435          130 PEIINLSRLSYLNLSSAGFFGQ----IPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISS  205 (922)
Q Consensus       130 ~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~  205 (922)
                      +.+..+..+++++||+|.+...    +...+.+.++|+..++|.-.....    ...+|..+.-                
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~----~~Ei~e~L~~----------------   83 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRL----KDEIPEALKM----------------   83 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCc----HHHHHHHHHH----------------
Confidence            3456677888888888887432    334555667777777765421000    0112211100                


Q ss_pred             CCchhccCCCCCCEEeccCccCCccCccc----cCCCCCCCEEeCcCCCCCCCc-------------ccccCCCCCCcEE
Q 002435          206 PIPHSLANLSSLTLLSLSGCELRGRIPSL----LGNLTKLMYLDLSFNNLLGEL-------------PTSIGNLDCLKRL  268 (922)
Q Consensus       206 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~----l~~l~~L~~L~Ls~n~l~~~~-------------~~~l~~l~~L~~L  268 (922)
                       +.+++..+++|++|+||+|.+....+..    +.+++.|++|.|.+|.+.-.-             ....+.-++|+++
T Consensus        84 -l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~  162 (382)
T KOG1909|consen   84 -LSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVF  162 (382)
T ss_pred             -HHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEE
Confidence             1123334455555555555554332222    244566666666666553111             1123344678888


Q ss_pred             EcccCCCCCC----chhhhhCCCCCCEEEccCCCCCCCCc----ccccCCCCCcEEEeeccCCCCc----ccccccCCCC
Q 002435          269 DISWNELSGE----LPASIGNLASLEQLELSLNRFRGKTP----HSMGNFTRLYWLSLASNDFSGE----LPASFGNLRS  336 (922)
Q Consensus       269 ~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~  336 (922)
                      ...+|++...    +...|...+.|+.+.++.|.+.....    ..+..+++|+.|||.+|.++..    +...+..+++
T Consensus       163 i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~  242 (382)
T KOG1909|consen  163 ICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH  242 (382)
T ss_pred             EeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch
Confidence            8888877632    33456667788888888877653222    3455667777777777766532    2334455566


Q ss_pred             CceEecCCCccCccCchhh-----cCCCCccEEEccCCCCcCcc--chhhhhhccCCcceEeCcCccc
Q 002435          337 LEGLDISECKFSSQIPSSL-----RNLAQLKFLEFSHNNFSGPI--DLDMFLVNFKHLEHLSLSSNRL  397 (922)
Q Consensus       337 L~~L~Ls~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~--~~~~~~~~l~~L~~L~Ls~n~l  397 (922)
                      |++|++++|.+...-..++     ...|+|+.|.+.+|.++..-  .........+.|+.|+|++|++
T Consensus       243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             heeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            6666666666653322221     23456666666666554211  0111112345555555555555

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.07  E-value=2.2e-10  Score=129.26  Aligned_cols=183  Identities=40%  Similarity=0.571  Sum_probs=97.8

Q ss_pred             ccCCCCCCEEECCCCCCCCcCchhhcCCC-CCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchh
Q 002435          132 IINLSRLSYLNLSSAGFFGQIPSEILELS-NLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHS  210 (922)
Q Consensus       132 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~  210 (922)
                      +..++.++.|++.+|.+ ..+|+..+.+. +|+.|++++|++        ..+|..+..+++|+.|++++|++.. +|..
T Consensus       112 ~~~~~~l~~L~l~~n~i-~~i~~~~~~~~~nL~~L~l~~N~i--------~~l~~~~~~l~~L~~L~l~~N~l~~-l~~~  181 (394)
T COG4886         112 LLELTNLTSLDLDNNNI-TDIPPLIGLLKSNLKELDLSDNKI--------ESLPSPLRNLPNLKNLDLSFNDLSD-LPKL  181 (394)
T ss_pred             hhcccceeEEecCCccc-ccCccccccchhhcccccccccch--------hhhhhhhhccccccccccCCchhhh-hhhh
Confidence            33445555555555555 33444444442 555555555543        2222344555555555555555544 2333


Q ss_pred             ccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCC
Q 002435          211 LANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLE  290 (922)
Q Consensus       211 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  290 (922)
                      .+..+.|+.|++++|++. .+|..+.....|++|.+++|.+. ..+..+.++.++..+.+.+|++. .++..+..+++++
T Consensus       182 ~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~  258 (394)
T COG4886         182 LSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLE  258 (394)
T ss_pred             hhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccc
Confidence            335556666666666665 44444444455666666666432 23345556666666666666654 2245556666666


Q ss_pred             EEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccc
Q 002435          291 QLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPA  329 (922)
Q Consensus       291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~  329 (922)
                      +|++++|.++....  ++.+.+++.|++++|.+....|.
T Consensus       259 ~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         259 TLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             eecccccccccccc--ccccCccCEEeccCccccccchh
Confidence            66666666664333  56666666666666666544443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.06  E-value=1.3e-11  Score=132.70  Aligned_cols=172  Identities=29%  Similarity=0.370  Sum_probs=138.2

Q ss_pred             ceEeccCccccCCCCCC--CCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCC
Q 002435          487 FTLDLSYNYLQGPLPVP--PPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQH  564 (922)
Q Consensus       487 ~~L~ls~n~l~~~~~~~--~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~  564 (922)
                      ...|++.|++...+...  +..++.+.+..|.+. .||..++. +..|+++||+.|+++ ..|..++.++  |+.|-+++
T Consensus        78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~-L~~lt~l~ls~NqlS-~lp~~lC~lp--Lkvli~sN  152 (722)
T KOG0532|consen   78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICN-LEALTFLDLSSNQLS-HLPDGLCDLP--LKVLIVSN  152 (722)
T ss_pred             hhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhh-hhHHHHhhhccchhh-cCChhhhcCc--ceeEEEec
Confidence            44566666665443322  456777788888887 78888888 889999999999998 7788888887  99999999


Q ss_pred             CcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCC
Q 002435          565 NKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIR  644 (922)
Q Consensus       565 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~  644 (922)
                      |+++ .+|..++.+..|..||.+.|.+. .+|..+.++.+|+.|.+..|++. .+|..+..| .|..||++.|++..+ |
T Consensus       153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis~i-P  227 (722)
T KOG0532|consen  153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKISYL-P  227 (722)
T ss_pred             Cccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCceeec-c
Confidence            9997 77888888899999999999998 67888999999999999999998 456666644 588999999999865 3


Q ss_pred             CCCCCCCCCCccEEEccCCcCCCCCCh
Q 002435          645 EPNTGCGFPELRIIDLSNNRFTGKLPS  671 (922)
Q Consensus       645 ~~~~~~~l~~L~~LdLs~N~l~g~ip~  671 (922)
                      ..  ++.+..|++|-|.+|++. +-|.
T Consensus       228 v~--fr~m~~Lq~l~LenNPLq-SPPA  251 (722)
T KOG0532|consen  228 VD--FRKMRHLQVLQLENNPLQ-SPPA  251 (722)
T ss_pred             hh--hhhhhhheeeeeccCCCC-CChH
Confidence            33  478899999999999997 4443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.04  E-value=1.1e-11  Score=133.16  Aligned_cols=175  Identities=34%  Similarity=0.456  Sum_probs=101.1

Q ss_pred             cCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHh
Q 002435          109 KLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVK  188 (922)
Q Consensus       109 ~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~  188 (922)
                      .+.--...||+.|++.  .+|...+.+..|+.+.|..|.+ -.+|..++++..|.+|||+.|++.        .+|..+.
T Consensus        73 ~ltdt~~aDlsrNR~~--elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS--------~lp~~lC  141 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS--ELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLS--------HLPDGLC  141 (722)
T ss_pred             cccchhhhhccccccc--cCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhh--------cCChhhh
Confidence            4555566778888774  4777777777788888887777 667777888888888888887742        2333333


Q ss_pred             cCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEE
Q 002435          189 KLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRL  268 (922)
Q Consensus       189 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  268 (922)
                      .|+ |+.|-+++|+++. +|+.++....|..||.+.|.+. .+|..++.+.+|+.|.+..|++. .+|+.+..+ .|..|
T Consensus       142 ~lp-Lkvli~sNNkl~~-lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~l  216 (722)
T KOG0532|consen  142 DLP-LKVLIVSNNKLTS-LPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRL  216 (722)
T ss_pred             cCc-ceeEEEecCcccc-CCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeee
Confidence            332 5555555555443 3444554555555555555554 34444555555555555555554 233334422 25555


Q ss_pred             EcccCCCCCCchhhhhCCCCCCEEEccCCCCC
Q 002435          269 DISWNELSGELPASIGNLASLEQLELSLNRFR  300 (922)
Q Consensus       269 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  300 (922)
                      |++.|+++ .+|..|.+|..|++|.|.+|.+.
T Consensus       217 DfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  217 DFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             ecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            55555554 44555555555555555555554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=7.9e-11  Score=123.14  Aligned_cols=184  Identities=23%  Similarity=0.259  Sum_probs=82.5

Q ss_pred             CCCCCcEEEcccCCCCCC--chhhhhCCCCCCEEEccCCCCCCCCccc-ccCCCCCcEEEeeccCCCC-cccccccCCCC
Q 002435          261 NLDCLKRLDISWNELSGE--LPASIGNLASLEQLELSLNRFRGKTPHS-MGNFTRLYWLSLASNDFSG-ELPASFGNLRS  336 (922)
Q Consensus       261 ~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~  336 (922)
                      .|++++.|||++|-+..-  +......+++|+.|+|+.|++....... -..+++|+.|.++.|.++- .+-..+..+|+
T Consensus       144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs  223 (505)
T KOG3207|consen  144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS  223 (505)
T ss_pred             hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence            344444444444444321  1122344555555555555544222111 1234555666666665542 11122334566


Q ss_pred             CceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccc------cCCCC
Q 002435          337 LEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIF------NTSQK  410 (922)
Q Consensus       337 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~------~~~~~  410 (922)
                      |+.|++..|.....-......+..|++|+|++|++.. .+.......++.|+.|+++.+.+..+.....      ..+++
T Consensus       224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~k  302 (505)
T KOG3207|consen  224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPK  302 (505)
T ss_pred             HHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccchhhhccccc
Confidence            6666666664222222223344556666666666542 2211222455666666666665554432221      23445


Q ss_pred             ccEEEecCCCCCCCcc--cccCCCCccEEECcCCCCC
Q 002435          411 FNFVGLRSCNLNEFPN--FLKNQHYLEVLDLSCNKIH  445 (922)
Q Consensus       411 L~~L~L~~~~l~~lp~--~l~~~~~L~~L~Ls~n~l~  445 (922)
                      |++|++..|++..++.  .+..+++|+.|.+..|.+.
T Consensus       303 L~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  303 LEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            5555555555543332  2333444444444444443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=6.9e-11  Score=123.58  Aligned_cols=215  Identities=28%  Similarity=0.302  Sum_probs=108.4

Q ss_pred             cCCCCCCEEECCCCCCCCcCc--hhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchh
Q 002435          133 INLSRLSYLNLSSAGFFGQIP--SEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHS  210 (922)
Q Consensus       133 ~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~  210 (922)
                      .++++|+...|.++.. +..+  .....|++++.||||.|-+++.     ..+-.....+++|+.|+++.|.+.......
T Consensus       118 sn~kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~NL~~nw-----~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~  191 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSRNLFHNW-----FPVLKIAEQLPSLENLNLSSNRLSNFISSN  191 (505)
T ss_pred             hhHHhhhheeecCccc-cccchhhhhhhCCcceeecchhhhHHhH-----HHHHHHHHhcccchhcccccccccCCcccc
Confidence            4567777777777665 2222  2455577777777777755433     223455566677777777776654432221


Q ss_pred             c-cCCCCCCEEeccCccCCcc-CccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCch--hhhhCC
Q 002435          211 L-ANLSSLTLLSLSGCELRGR-IPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELP--ASIGNL  286 (922)
Q Consensus       211 l-~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~l~~l  286 (922)
                      . ..+++|+.|.++.|.++.. +-..+..+++|+.|+|..|.....-.....-+..|++|+|++|++.. .+  ...+.+
T Consensus       192 ~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l  270 (505)
T KOG3207|consen  192 TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTL  270 (505)
T ss_pred             chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccc
Confidence            1 2346666666666666522 11223455666666666664222222233344556666666665542 12  224455


Q ss_pred             CCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCcc-CchhhcCCCCccEEE
Q 002435          287 ASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQ-IPSSLRNLAQLKFLE  365 (922)
Q Consensus       287 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~  365 (922)
                      +.|+.|+++.+.+....-...                  ..-+-...+++|++|++..|++... .-..+..+++|+.|.
T Consensus       271 ~~L~~Lnls~tgi~si~~~d~------------------~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~  332 (505)
T KOG3207|consen  271 PGLNQLNLSSTGIASIAEPDV------------------ESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLR  332 (505)
T ss_pred             cchhhhhccccCcchhcCCCc------------------cchhhhcccccceeeecccCccccccccchhhccchhhhhh
Confidence            555555555555443211110                  0000023345666666666665321 112334455566666


Q ss_pred             ccCCCCc
Q 002435          366 FSHNNFS  372 (922)
Q Consensus       366 L~~n~l~  372 (922)
                      +..|.+.
T Consensus       333 ~~~n~ln  339 (505)
T KOG3207|consen  333 ITLNYLN  339 (505)
T ss_pred             ccccccc
Confidence            6666554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.93  E-value=1.7e-10  Score=114.43  Aligned_cols=131  Identities=26%  Similarity=0.286  Sum_probs=58.4

Q ss_pred             CCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEe
Q 002435          239 TKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSL  318 (922)
Q Consensus       239 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  318 (922)
                      +.|+++|||+|.|+ .+.++..-.++++.|++++|.+.. + +.+..+++|+.|||++|.++. ...+-..+-+++.|.|
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeeh
Confidence            34444444444443 222333334444444444444431 1 124444444444444444432 1122223344444555


Q ss_pred             eccCCCCcccccccCCCCCceEecCCCccCcc-CchhhcCCCCccEEEccCCCCcCcc
Q 002435          319 ASNDFSGELPASFGNLRSLEGLDISECKFSSQ-IPSSLRNLAQLKFLEFSHNNFSGPI  375 (922)
Q Consensus       319 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~  375 (922)
                      ++|.+..  -..++.+-+|..||+++|+|... .-..++++|.|+.+.+.+|.+.+..
T Consensus       360 a~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  360 AQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            5544421  12244445555556665555421 1124556666666666666665433

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.92  E-value=3e-10  Score=112.75  Aligned_cols=133  Identities=21%  Similarity=0.202  Sum_probs=78.7

Q ss_pred             CCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEE
Q 002435          286 LASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLE  365 (922)
Q Consensus       286 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  365 (922)
                      ...|+++||++|.++ .+..+..-.|.++.|++++|.+...  ..+..+++|+.|||++|.++. +..+-..+-+++.|.
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLK  358 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeee
Confidence            344666666666665 3334455556666666666666522  225566666777777666652 233444556666777


Q ss_pred             ccCCCCcCccchhhhhhccCCcceEeCcCccccccccc-cccCCCCccEEEecCCCCCCCcc
Q 002435          366 FSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKA-IFNTSQKFNFVGLRSCNLNEFPN  426 (922)
Q Consensus       366 L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~L~~L~L~~~~l~~lp~  426 (922)
                      +++|.+..-   + -+..+-+|..||+++|+|...... .++.+|.|+.+.+.+|.+..+++
T Consensus       359 La~N~iE~L---S-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  359 LAQNKIETL---S-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhhhhHhhh---h-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            777665421   1 124566677777777776665432 35667777777777777766654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.88  E-value=1.4e-09  Score=104.63  Aligned_cols=106  Identities=33%  Similarity=0.412  Sum_probs=28.8

Q ss_pred             CCCCCCEEeccCccCCccCccccC-CCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhh-hCCCCCC
Q 002435          213 NLSSLTLLSLSGCELRGRIPSLLG-NLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASI-GNLASLE  290 (922)
Q Consensus       213 ~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~  290 (922)
                      +..++++|+|++|+|+..  +.++ .+.+|+.|++++|.++..  +.+..+++|++|++++|.++. +...+ ..+++|+
T Consensus        17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred             cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence            444566677777666632  3344 466777777777777643  346666777777777777763 33333 3567777


Q ss_pred             EEEccCCCCCCCCc-ccccCCCCCcEEEeeccCC
Q 002435          291 QLELSLNRFRGKTP-HSMGNFTRLYWLSLASNDF  323 (922)
Q Consensus       291 ~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l  323 (922)
                      +|++++|++..... ..+..+++|+.|++.+|.+
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence            77777777654221 2333444444444444444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.85  E-value=1.7e-09  Score=85.38  Aligned_cols=60  Identities=40%  Similarity=0.594  Sum_probs=38.2

Q ss_pred             CCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcc
Q 002435          754 GLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNL  813 (922)
Q Consensus       754 ~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~l  813 (922)
                      +|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455666666666655556666666666666666666666666666666666666666654

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.84  E-value=2.7e-09  Score=128.18  Aligned_cols=85  Identities=33%  Similarity=0.355  Sum_probs=41.6

Q ss_pred             ccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhc
Q 002435          132 IINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSL  211 (922)
Q Consensus       132 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l  211 (922)
                      |..++.|++|||++|.=.+.+|..|++|-+||+|+++++.+        ..+|..+.+++.|.+|++..+.....+|..+
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I--------~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~  638 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI--------SHLPSGLGNLKKLIYLNLEVTGRLESIPGIL  638 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc--------cccchHHHHHHhhheeccccccccccccchh
Confidence            44455555555555444445555555555555555555543        2344455555555555555444333333334


Q ss_pred             cCCCCCCEEeccC
Q 002435          212 ANLSSLTLLSLSG  224 (922)
Q Consensus       212 ~~l~~L~~L~Ls~  224 (922)
                      ..+++|++|.+..
T Consensus       639 ~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  639 LELQSLRVLRLPR  651 (889)
T ss_pred             hhcccccEEEeec
Confidence            4455555555543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.83  E-value=2.6e-09  Score=102.80  Aligned_cols=84  Identities=33%  Similarity=0.379  Sum_probs=16.9

Q ss_pred             CCCCCCEEeCcCCCCCCCcccccC-CCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcE
Q 002435          237 NLTKLMYLDLSFNNLLGELPTSIG-NLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYW  315 (922)
Q Consensus       237 ~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  315 (922)
                      +..++++|+|++|.|+.+  +.++ .+.+|+.|++++|.++. + +.+..+++|++|++++|.++...+.....+++|++
T Consensus        17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             cccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            334556666666666532  2343 35556666666666552 2 23445555555555555555332211123455555


Q ss_pred             EEeeccCCC
Q 002435          316 LSLASNDFS  324 (922)
Q Consensus       316 L~L~~n~l~  324 (922)
                      |++++|++.
T Consensus        93 L~L~~N~I~  101 (175)
T PF14580_consen   93 LYLSNNKIS  101 (175)
T ss_dssp             EE-TTS---
T ss_pred             EECcCCcCC
Confidence            555555543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.78  E-value=5.3e-09  Score=82.57  Aligned_cols=61  Identities=38%  Similarity=0.480  Sum_probs=57.2

Q ss_pred             ccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcC
Q 002435          729 NFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKF  789 (922)
Q Consensus       729 ~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l  789 (922)
                      +.|+.|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3588999999999977778999999999999999999999999999999999999999986

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.75  E-value=4.8e-09  Score=126.10  Aligned_cols=178  Identities=26%  Similarity=0.291  Sum_probs=115.4

Q ss_pred             cEEEEECCCCCC-CCcccCccccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCE
Q 002435           86 HVIKLDLSNSCL-QGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVS  164 (922)
Q Consensus        86 ~v~~L~L~~~~l-~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  164 (922)
                      .+++|-+.++.. -..++. ..|..++.|++|||++|.-. ..+|..|+.+-+||||+|+++.+ ..+|..+++|..|.+
T Consensus       546 ~L~tLll~~n~~~l~~is~-~ff~~m~~LrVLDLs~~~~l-~~LP~~I~~Li~LryL~L~~t~I-~~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISG-EFFRSLPLLRVLDLSGNSSL-SKLPSSIGELVHLRYLDLSDTGI-SHLPSGLGNLKKLIY  622 (889)
T ss_pred             ccceEEEeecchhhhhcCH-HHHhhCcceEEEECCCCCcc-CcCChHHhhhhhhhcccccCCCc-cccchHHHHHHhhhe
Confidence            467777777652 111111 24777999999999997644 45999999999999999999998 589999999999999


Q ss_pred             EEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcC--CCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCC
Q 002435          165 LDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTI--SSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLM  242 (922)
Q Consensus       165 L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~--~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  242 (922)
                      |++..+...       ..+|.....+++||+|.+.....  +...-..+.++.+|+.+.......  .+-..+..+++|.
T Consensus       623 Lnl~~~~~l-------~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~  693 (889)
T KOG4658|consen  623 LNLEVTGRL-------ESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLR  693 (889)
T ss_pred             ecccccccc-------ccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHH
Confidence            999987521       23356677799999999987652  222334455556666665543332  1112223333333


Q ss_pred             ----EEeCcCCCCCCCcccccCCCCCCcEEEcccCCCC
Q 002435          243 ----YLDLSFNNLLGELPTSIGNLDCLKRLDISWNELS  276 (922)
Q Consensus       243 ----~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  276 (922)
                          .+.+..+... ..+..+..+.+|+.|.+.++.+.
T Consensus       694 ~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  694 SLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             HHhHhhhhcccccc-eeecccccccCcceEEEEcCCCc
Confidence                2222222221 23345566667777777666654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.67  E-value=3.7e-09  Score=119.30  Aligned_cols=199  Identities=27%  Similarity=0.271  Sum_probs=95.4

Q ss_pred             cCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCc
Q 002435          259 IGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLE  338 (922)
Q Consensus       259 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  338 (922)
                      +..+++|+.|++.+|++.. +...+..+++|++|++++|.|+...+  +..++.|+.|++.+|.+...  ..+..++.|+
T Consensus        91 l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~  165 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLK  165 (414)
T ss_pred             cccccceeeeeccccchhh-cccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhhh
Confidence            3344444444444444442 11113444555555555555543322  33344455555555555421  2233355566


Q ss_pred             eEecCCCccCccCc-hhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEec
Q 002435          339 GLDISECKFSSQIP-SSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLR  417 (922)
Q Consensus       339 ~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~  417 (922)
                      .+++++|++....+ . ...+.+++.+++.+|.+......    ..+..+..+++..|.++.+..........|+.++++
T Consensus       166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~----~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~  240 (414)
T KOG0531|consen  166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGL----DLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLS  240 (414)
T ss_pred             cccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccch----HHHHHHHHhhcccccceeccCcccchhHHHHHHhcc
Confidence            66666666554322 1 35555666666666655422211    223333344555565554432211111126666666


Q ss_pred             CCCCCCCcccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccc
Q 002435          418 SCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLI  471 (922)
Q Consensus       418 ~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~  471 (922)
                      ++.+..++..+..+..+..|++.+|++...-...    ....+..+....|.+.
T Consensus       241 ~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~----~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  241 GNRISRSPEGLENLKNLPVLDLSSNRISNLEGLE----RLPKLSELWLNDNKLA  290 (414)
T ss_pred             cCccccccccccccccccccchhhcccccccccc----ccchHHHhccCcchhc
Confidence            6666666555666677777777777765332211    2334444444444443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.63  E-value=3.3e-09  Score=119.73  Aligned_cols=62  Identities=29%  Similarity=0.251  Sum_probs=31.6

Q ss_pred             cCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCC
Q 002435          109 KLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYY  173 (922)
Q Consensus       109 ~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~  173 (922)
                      .+..++.+++..|.+..  +-..++.+++|++|++.+|.+... ...+..+++|++|++++|.|.
T Consensus        70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~  131 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT  131 (414)
T ss_pred             HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccc
Confidence            44555555566555532  223355556666666666655322 222444555666666665543

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.58  E-value=6.7e-08  Score=69.57  Aligned_cols=42  Identities=40%  Similarity=0.786  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHhhcCCcCCCCCcccccCCCCCCCCCCCCCCCCCCCccccceEec
Q 002435           28 SYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCLWDGVECN   81 (922)
Q Consensus        28 ~~~~~all~~k~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~   81 (922)
                      ++|++||++||+++..++.           ..+.+|+... ..+||.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~-----------~~l~~W~~~~-~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPS-----------GVLSSWNPSS-DSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC------------CCCTT--TT---S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccC-----------cccccCCCcC-CCCCeeeccEEeC
Confidence            6899999999999986443           2789999731 2799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=2.4e-09  Score=106.53  Aligned_cols=177  Identities=23%  Similarity=0.167  Sum_probs=90.7

Q ss_pred             CCEEECCCCCCCCc-CchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCc-CCCC-CchhccCC
Q 002435          138 LSYLNLSSAGFFGQ-IPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVT-ISSP-IPHSLANL  214 (922)
Q Consensus       138 L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~-~~~~-~~~~l~~l  214 (922)
                      |++||||...++.. +-.-+..|.+|+.|.+.++++.       ..+...+.+-.+|+.|+++.+. ++.. ..--+.+|
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld-------D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~sc  259 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD-------DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSC  259 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC-------cHHHHHHhccccceeeccccccccchhHHHHHHHhh
Confidence            55555555544321 1122344555555555555421       2333445555555555555543 2221 11224556


Q ss_pred             CCCCEEeccCccCCccCccc-cC-CCCCCCEEeCcCCCC--C-CCcccccCCCCCCcEEEcccCC-CCCCchhhhhCCCC
Q 002435          215 SSLTLLSLSGCELRGRIPSL-LG-NLTKLMYLDLSFNNL--L-GELPTSIGNLDCLKRLDISWNE-LSGELPASIGNLAS  288 (922)
Q Consensus       215 ~~L~~L~Ls~n~l~~~~~~~-l~-~l~~L~~L~Ls~n~l--~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~  288 (922)
                      +.|+.|++++|.+....... +. --++|+.|+|+++.-  . ..+..-...+++|..|||++|. ++...-..|.+++.
T Consensus       260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~  339 (419)
T KOG2120|consen  260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY  339 (419)
T ss_pred             hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence            66666666666654322111 11 124566666666521  1 1122223456777777777663 44344455667777


Q ss_pred             CCEEEccCCCCCCCCcc---cccCCCCCcEEEeeccCC
Q 002435          289 LEQLELSLNRFRGKTPH---SMGNFTRLYWLSLASNDF  323 (922)
Q Consensus       289 L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~L~~n~l  323 (922)
                      |++|.++.|..  .+|.   .+...+.|.+|+..++--
T Consensus       340 L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  340 LQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             heeeehhhhcC--CChHHeeeeccCcceEEEEeccccC
Confidence            88877777753  3443   346667788888776643

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.43  E-value=1.1e-07  Score=94.79  Aligned_cols=204  Identities=17%  Similarity=0.159  Sum_probs=123.1

Q ss_pred             CCCCcEEEcccCCCCC--CchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCC-cccccccCCCCCc
Q 002435          262 LDCLKRLDISWNELSG--ELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSG-ELPASFGNLRSLE  338 (922)
Q Consensus       262 l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~  338 (922)
                      ++.++.+||.+|.++.  .+...+.++|.|+.|+|+.|++...+...-....+|+.|-|.+..+.= .....+..+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            4566667777776653  344445667777777777777665443222345667777776665531 2223455667777


Q ss_pred             eEecCCCccCccC--chhhc-CCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccc-cccccCCCCccEE
Q 002435          339 GLDISECKFSSQI--PSSLR-NLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFT-KAIFNTSQKFNFV  414 (922)
Q Consensus       339 ~L~Ls~n~l~~~~--~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~~~~L~~L  414 (922)
                      +|.++.|.+....  ..... .-+.+++|.+-.|...-..........+|++..+.+..|.+.... ...+..++.+..|
T Consensus       150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L  229 (418)
T KOG2982|consen  150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL  229 (418)
T ss_pred             hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence            7777777432110  01111 112445555555543322222223356788999999999887654 3456778888899


Q ss_pred             EecCCCCCCCc--ccccCCCCccEEECcCCCCCCCC----CccccccCCCCccEEEc
Q 002435          415 GLRSCNLNEFP--NFLKNQHYLEVLDLSCNKIHGKV----PKWLIEPSMQNFSYLNL  465 (922)
Q Consensus       415 ~L~~~~l~~lp--~~l~~~~~L~~L~Ls~n~l~~~~----p~~~~~~~l~~L~~L~L  465 (922)
                      +|+.+++.++.  +.+..++.|..|.++++.+...+    +..+.-..+++++.|+=
T Consensus       230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG  286 (418)
T KOG2982|consen  230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG  286 (418)
T ss_pred             hhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence            99999998665  46788999999999999876443    33222235566666653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=1.2e-08  Score=101.69  Aligned_cols=156  Identities=27%  Similarity=0.365  Sum_probs=78.4

Q ss_pred             CCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCcc-CCcc-CccccCCC
Q 002435          161 NLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCE-LRGR-IPSLLGNL  238 (922)
Q Consensus       161 ~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~-~~~~l~~l  238 (922)
                      .||+||||...+      +...+...+..|.+|+.|.+.++++.+.+...+++-.+|+.|+++.+. ++.. ..-.+.++
T Consensus       186 Rlq~lDLS~s~i------t~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~sc  259 (419)
T KOG2120|consen  186 RLQHLDLSNSVI------TVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSC  259 (419)
T ss_pred             hhHHhhcchhhe------eHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhh
Confidence            467777776542      223444556667777777777777777666666666777777776653 2211 11123566


Q ss_pred             CCCCEEeCcCCCCCCCcccc-cCC-CCCCcEEEcccCCCC---CCchhhhhCCCCCCEEEccCCC-CCCCCcccccCCCC
Q 002435          239 TKLMYLDLSFNNLLGELPTS-IGN-LDCLKRLDISWNELS---GELPASIGNLASLEQLELSLNR-FRGKTPHSMGNFTR  312 (922)
Q Consensus       239 ~~L~~L~Ls~n~l~~~~~~~-l~~-l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~  312 (922)
                      +.|..|+|++|.++...... +.+ -++|+.|+++++.-.   ..+..-...+++|.+|||++|. ++......|.+++.
T Consensus       260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~  339 (419)
T KOG2120|consen  260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY  339 (419)
T ss_pred             hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence            66666666666554332111 111 145556666554211   1122222345555555555543 22222223334444


Q ss_pred             CcEEEeeccC
Q 002435          313 LYWLSLASND  322 (922)
Q Consensus       313 L~~L~L~~n~  322 (922)
                      |++|.++.|.
T Consensus       340 L~~lSlsRCY  349 (419)
T KOG2120|consen  340 LQHLSLSRCY  349 (419)
T ss_pred             heeeehhhhc
Confidence            4444444443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.38  E-value=1e-08  Score=107.11  Aligned_cols=298  Identities=19%  Similarity=0.128  Sum_probs=143.0

Q ss_pred             CcEEEEECCCCCCCCcccCccccccCCCCCeeeCCCCCCCCCCCCccc-cCCCCCCEEECCCCC-CCCcCchhh-cCCCC
Q 002435           85 GHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEI-INLSRLSYLNLSSAG-FFGQIPSEI-LELSN  161 (922)
Q Consensus        85 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l-~~l~~L~~L~Ls~n~-l~~~~p~~l-~~l~~  161 (922)
                      +++++|.++|.+-.+.-+.-.....++++++|++.++...++..-..+ ..+++|++|+|..|. ++...-..+ ..+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            567777777765444322211334677777777777754322222222 357777888777743 332222222 24777


Q ss_pred             CCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhc----cCCCCCCEEeccCcc-CCccCcc-cc
Q 002435          162 LVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSL----ANLSSLTLLSLSGCE-LRGRIPS-LL  235 (922)
Q Consensus       162 L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l----~~l~~L~~L~Ls~n~-l~~~~~~-~l  235 (922)
                      |++|+++.+.     ++....+.....++..++.+.+.+|.-.+  .+.+    +.+..+.++++..|. +++..-. .-
T Consensus       218 L~~lNlSwc~-----qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~  290 (483)
T KOG4341|consen  218 LKYLNLSWCP-----QISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA  290 (483)
T ss_pred             HHHhhhccCc-----hhhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHHh
Confidence            7888877773     44445555666666666666666543211  1111    233445555555543 2221111 11


Q ss_pred             CCCCCCCEEeCcCCCCCCC-cccc-cCCCCCCcEEEcccCCC-CCCchhhh-hCCCCCCEEEccCCCCCCC--CcccccC
Q 002435          236 GNLTKLMYLDLSFNNLLGE-LPTS-IGNLDCLKRLDISWNEL-SGELPASI-GNLASLEQLELSLNRFRGK--TPHSMGN  309 (922)
Q Consensus       236 ~~l~~L~~L~Ls~n~l~~~-~~~~-l~~l~~L~~L~L~~n~l-~~~~~~~l-~~l~~L~~L~L~~n~l~~~--~~~~l~~  309 (922)
                      ..+..|+.|+.+++.-.+. .-.+ -.+..+|+.|.++.++- +..--..+ .+++.|+.+++..+.....  +...-.+
T Consensus       291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~  370 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN  370 (483)
T ss_pred             hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence            2456666776666533211 1111 23456677777666652 21111112 2455666666665543211  1122234


Q ss_pred             CCCCcEEEeeccCCCCcc-----cccccCCCCCceEecCCCccC-ccCchhhcCCCCccEEEccCCCCcCccchhhhhhc
Q 002435          310 FTRLYWLSLASNDFSGEL-----PASFGNLRSLEGLDISECKFS-SQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVN  383 (922)
Q Consensus       310 l~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~  383 (922)
                      ++.|+.+.++.+......     ...-..+..|+.+.++++... ...-+.+..+++|+.+++.+++-....+...|..+
T Consensus       371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~  450 (483)
T KOG4341|consen  371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATH  450 (483)
T ss_pred             CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhh
Confidence            556666666655432111     111123345555555555433 22223344555555555555544333333334344


Q ss_pred             cCCcce
Q 002435          384 FKHLEH  389 (922)
Q Consensus       384 l~~L~~  389 (922)
                      +|+++.
T Consensus       451 lp~i~v  456 (483)
T KOG4341|consen  451 LPNIKV  456 (483)
T ss_pred             Ccccee
Confidence            444443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.28  E-value=3.2e-07  Score=90.51  Aligned_cols=247  Identities=20%  Similarity=0.177  Sum_probs=121.0

Q ss_pred             ccCCCCCCEEECCCCCCCCcCc----hhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCC
Q 002435          132 IINLSRLSYLNLSSAGFFGQIP----SEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPI  207 (922)
Q Consensus       132 l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~  207 (922)
                      +..+..++.+|||+|.|...-.    ..|.+-.+|+..+++.-..    ......++..+.                 .+
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ft----gr~kde~~~~L~-----------------~L   84 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFT----GRDKDELYSNLV-----------------ML   84 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhh----cccHHHHHHHHH-----------------HH
Confidence            4456778888888887754433    3344456677666665321    000011111100                 01


Q ss_pred             chhccCCCCCCEEeccCccCCccCccc----cCCCCCCCEEeCcCCCCCCC----ccc---------ccCCCCCCcEEEc
Q 002435          208 PHSLANLSSLTLLSLSGCELRGRIPSL----LGNLTKLMYLDLSFNNLLGE----LPT---------SIGNLDCLKRLDI  270 (922)
Q Consensus       208 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~----l~~l~~L~~L~Ls~n~l~~~----~~~---------~l~~l~~L~~L~L  270 (922)
                      ..++.+||+|+..+||.|.+....|+.    +++-+.|++|.+++|.+.-.    +..         -...-+.|++...
T Consensus        85 l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vic  164 (388)
T COG5238          85 LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC  164 (388)
T ss_pred             HHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence            123444555555555555554433332    34455566666666654311    111         1223466777777


Q ss_pred             ccCCCCCCc----hhhhhCCCCCCEEEccCCCCCCCCc-----ccccCCCCCcEEEeeccCCCCc----ccccccCCCCC
Q 002435          271 SWNELSGEL----PASIGNLASLEQLELSLNRFRGKTP-----HSMGNFTRLYWLSLASNDFSGE----LPASFGNLRSL  337 (922)
Q Consensus       271 ~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~-----~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L  337 (922)
                      ..|++....    ...+..-.+|+++.+..|.|.....     ..+..+.+|+.|++.+|.++..    +...+...+.|
T Consensus       165 grNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l  244 (388)
T COG5238         165 GRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL  244 (388)
T ss_pred             ccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence            777765221    1123333567777777776653211     1234556677777777766532    22333445566


Q ss_pred             ceEecCCCccCccCchhh------cCCCCccEEEccCCCCcCccchhhh-----hhccCCcceEeCcCccccc
Q 002435          338 EGLDISECKFSSQIPSSL------RNLAQLKFLEFSHNNFSGPIDLDMF-----LVNFKHLEHLSLSSNRLSL  399 (922)
Q Consensus       338 ~~L~Ls~n~l~~~~~~~l------~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~l~~L~~L~Ls~n~l~~  399 (922)
                      ++|.+.+|-++..-..++      ...++|+.|...+|...+.+-...+     ...+|-|..|.+.+|++..
T Consensus       245 rEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         245 RELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             hhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence            777777776653322211      1245666666666655543322211     1234455555555555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.27  E-value=1.7e-08  Score=111.93  Aligned_cols=125  Identities=30%  Similarity=0.364  Sum_probs=52.6

Q ss_pred             CCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeec
Q 002435          241 LMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLAS  320 (922)
Q Consensus       241 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  320 (922)
                      |...+.++|.+. .+..++.-++.|+.|+|++|+++..  +.+..+++|++|||++|.+....--....+. |+.|.+++
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence            444444444443 2233444445555555555555422  2444555555555555554422211122222 45555555


Q ss_pred             cCCCCcccccccCCCCCceEecCCCccCcc-CchhhcCCCCccEEEccCCCC
Q 002435          321 NDFSGELPASFGNLRSLEGLDISECKFSSQ-IPSSLRNLAQLKFLEFSHNNF  371 (922)
Q Consensus       321 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l  371 (922)
                      |.++..  ..+.++.+|+.||+++|-+.+. .-.-+..+..|+.|+|.+|.+
T Consensus       242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            544321  1234444445555555444321 011123334444444444443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.25  E-value=2.3e-07  Score=91.42  Aligned_cols=189  Identities=22%  Similarity=0.199  Sum_probs=89.6

Q ss_pred             CCCCCeeeCCCCCCCCC---CCCccccCCCCCCEEECCCCCC---CCcCc-------hhhcCCCCCCEEEcCCCCCCCcc
Q 002435          110 LVHLEWLDLAFNYFICS---EIPPEIINLSRLSYLNLSSAGF---FGQIP-------SEILELSNLVSLDLSHNSYYNLI  176 (922)
Q Consensus       110 l~~L~~L~Ls~n~~~~~---~~p~~l~~l~~L~~L~Ls~n~l---~~~~p-------~~l~~l~~L~~L~Ls~n~~~~~~  176 (922)
                      +..+..+|||+|.|...   .+...|.+-.+|++.+++.-..   ...++       +.+.+|++|+..+||.|.+..-.
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            44445555555544322   1223344455566665554311   11122       23456667777777766543221


Q ss_pred             cccCCChhHHHhcCCCCCEEEcCCCcCCCCCch-------------hccCCCCCCEEeccCccCCccCc----cccCCCC
Q 002435          177 ELKEPNLGNLVKKLTNLKELALGGVTISSPIPH-------------SLANLSSLTLLSLSGCELRGRIP----SLLGNLT  239 (922)
Q Consensus       177 ~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~-------------~l~~l~~L~~L~Ls~n~l~~~~~----~~l~~l~  239 (922)
                      .   ..+...+++-+.|.+|.+++|.+.-..-.             -.++-|.|++.....|++.....    ..+..-.
T Consensus       109 ~---e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~  185 (388)
T COG5238         109 P---EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE  185 (388)
T ss_pred             c---hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence            1   33445666667777777776665321111             12334666666666666542211    1122224


Q ss_pred             CCCEEeCcCCCCCCCc-----ccccCCCCCCcEEEcccCCCCCC----chhhhhCCCCCCEEEccCCCCCC
Q 002435          240 KLMYLDLSFNNLLGEL-----PTSIGNLDCLKRLDISWNELSGE----LPASIGNLASLEQLELSLNRFRG  301 (922)
Q Consensus       240 ~L~~L~Ls~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~  301 (922)
                      .|+.+.+..|.|.-.-     -..+..+.+|+.||+..|.++-.    +..++...+.|++|.+..|-++.
T Consensus       186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~  256 (388)
T COG5238         186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN  256 (388)
T ss_pred             CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence            5666666666553210     01123345566666666655421    12233344445555555555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.23  E-value=4.1e-07  Score=90.91  Aligned_cols=88  Identities=22%  Similarity=0.232  Sum_probs=60.3

Q ss_pred             CCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCC--CCcccccCCCCc
Q 002435          357 NLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLN--EFPNFLKNQHYL  434 (922)
Q Consensus       357 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~--~lp~~l~~~~~L  434 (922)
                      .++.++++|+.+|.++..-.....+.++|.|+.|++++|.+.......-.+..+|+.+-|.+..+.  .....+..++.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            455677777777777766555555667777777777777776555443345677888888777665  555666777777


Q ss_pred             cEEECcCCCC
Q 002435          435 EVLDLSCNKI  444 (922)
Q Consensus       435 ~~L~Ls~n~l  444 (922)
                      ++|.+|.|.+
T Consensus       149 telHmS~N~~  158 (418)
T KOG2982|consen  149 TELHMSDNSL  158 (418)
T ss_pred             hhhhhccchh
Confidence            7777777744

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.15  E-value=7.9e-08  Score=84.97  Aligned_cols=58  Identities=26%  Similarity=0.383  Sum_probs=26.4

Q ss_pred             CCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcc
Q 002435          754 GLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNL  813 (922)
Q Consensus       754 ~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~l  813 (922)
                      .++.|||++|.|+. +|..+..++.|+.|+++.|.+.- .|+-+..|.+|.+||...|.+
T Consensus        78 t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen   78 TATTLNLANNEISD-VPEELAAMPALRSLNLRFNPLNA-EPRVIAPLIKLDMLDSPENAR  135 (177)
T ss_pred             hhhhhhcchhhhhh-chHHHhhhHHhhhcccccCcccc-chHHHHHHHhHHHhcCCCCcc
Confidence            44444444444442 33334444444455555544442 233333344444444444444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.14  E-value=1.7e-07  Score=104.24  Aligned_cols=128  Identities=29%  Similarity=0.327  Sum_probs=65.7

Q ss_pred             cceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECC
Q 002435          532 LEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLG  611 (922)
Q Consensus       532 L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls  611 (922)
                      |...+.++|.+. .+..++.-++ .|+.|+|++|+++...  .+..++.|+.|||++|.+....--.-.+|. |+.|.++
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~-ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLP-ALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR  240 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHH-HhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence            444455555554 3333444444 4666666666665332  455566666666666666533222333343 6666666


Q ss_pred             CCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCC
Q 002435          612 NNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTG  667 (922)
Q Consensus       612 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g  667 (922)
                      +|.++..  ..+.++.+|+-||+++|-+.+.-.-. ..+.+..|+.|+|.+|++-|
T Consensus       241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~-pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELE-PLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhh-HHHHHHHHHHHhhcCCcccc
Confidence            6665532  33455666666666666555431111 11234556666666666543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.03  E-value=3.2e-07  Score=96.13  Aligned_cols=298  Identities=18%  Similarity=0.133  Sum_probs=145.9

Q ss_pred             CCCEEECCCCCCCCcCc--hhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCc-CCCCCchhc-c
Q 002435          137 RLSYLNLSSAGFFGQIP--SEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVT-ISSPIPHSL-A  212 (922)
Q Consensus       137 ~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~-~~~~~~~~l-~  212 (922)
                      .|+.|.++++.-.+.-+  ..-.+++++++|++.++.     .+++..+-..-..+++|++|++..|. ++...-..+ .
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~-----~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~  213 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK-----KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE  213 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcce-----eccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence            46667777665433222  223346666666666663     23334444445556666666665532 332222211 2


Q ss_pred             CCCCCCEEeccCcc-CCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhh----hCCC
Q 002435          213 NLSSLTLLSLSGCE-LRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASI----GNLA  287 (922)
Q Consensus       213 ~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l----~~l~  287 (922)
                      .+++|++|++++|. +++.                       .+...+.+++.++.+.+.+|.=.+  ...+    ..+.
T Consensus       214 gC~kL~~lNlSwc~qi~~~-----------------------gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~  268 (483)
T KOG4341|consen  214 GCRKLKYLNLSWCPQISGN-----------------------GVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCL  268 (483)
T ss_pred             hhhhHHHhhhccCchhhcC-----------------------cchHHhccchhhhhhhhccccccc--HHHHHHHhccCh
Confidence            34455555555443 2210                       011122334444444444432110  0111    1223


Q ss_pred             CCCEEEccCCC-CCCCCc-ccccCCCCCcEEEeeccCCCCcc-c-ccccCCCCCceEecCCCcc-CccCchhh-cCCCCc
Q 002435          288 SLEQLELSLNR-FRGKTP-HSMGNFTRLYWLSLASNDFSGEL-P-ASFGNLRSLEGLDISECKF-SSQIPSSL-RNLAQL  361 (922)
Q Consensus       288 ~L~~L~L~~n~-l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~-p-~~l~~l~~L~~L~Ls~n~l-~~~~~~~l-~~l~~L  361 (922)
                      .+..+++.++. ++...- ..-..+.+|+.++.+++...+.. - .--.+..+|+.|.++.|+- +..--..+ .+++.|
T Consensus       269 ~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~L  348 (483)
T KOG4341|consen  269 EILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHL  348 (483)
T ss_pred             HhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhh
Confidence            34444443432 222111 11234556677776665532211 1 1123467777777777753 21111112 456778


Q ss_pred             cEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccc-----cccccCCCCccEEEecCCCCC--CCcccccCCCCc
Q 002435          362 KFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFT-----KAIFNTSQKFNFVGLRSCNLN--EFPNFLKNQHYL  434 (922)
Q Consensus       362 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~~~~~~~L~~L~L~~~~l~--~lp~~l~~~~~L  434 (922)
                      +.+++..+.....-.......+++.|+.+.++++......     ...-.....++.+.+++|..+  ..-+.+..+++|
T Consensus       349 e~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~L  428 (483)
T KOG4341|consen  349 ERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNL  428 (483)
T ss_pred             hhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccc
Confidence            8888877765433333334467888888888888644332     111234567788888888766  344567778888


Q ss_pred             cEEECcCCCCCCCCCccccccCCCCccEEE
Q 002435          435 EVLDLSCNKIHGKVPKWLIEPSMQNFSYLN  464 (922)
Q Consensus       435 ~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~  464 (922)
                      +.+++.+++-...-+..-...+++++++..
T Consensus       429 eri~l~~~q~vtk~~i~~~~~~lp~i~v~a  458 (483)
T KOG4341|consen  429 ERIELIDCQDVTKEAISRFATHLPNIKVHA  458 (483)
T ss_pred             ceeeeechhhhhhhhhHHHHhhCccceehh
Confidence            888888876433322221112556555443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.78  E-value=1.5e-05  Score=57.50  Aligned_cols=36  Identities=44%  Similarity=0.616  Sum_probs=15.7

Q ss_pred             CCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCc
Q 002435          754 GLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFS  790 (922)
Q Consensus       754 ~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~  790 (922)
                      +|++|+|++|+|+. +|..+++|++|+.|++++|+|+
T Consensus         2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            34444444444442 2333444444444444444444

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.78  E-value=2.1e-06  Score=76.18  Aligned_cols=60  Identities=23%  Similarity=0.403  Sum_probs=28.7

Q ss_pred             CCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCC
Q 002435          239 TKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFR  300 (922)
Q Consensus       239 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  300 (922)
                      +.++.|+|++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++-.|+..+|.+.
T Consensus        77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            34444444444444 33444555555555555555544 33444444555555555554443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.76  E-value=0.00012  Score=79.56  Aligned_cols=32  Identities=25%  Similarity=0.238  Sum_probs=15.5

Q ss_pred             CCccEEecCCCcccccCCccccCCCCCcEEECCCC
Q 002435          579 RSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNN  613 (922)
Q Consensus       579 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N  613 (922)
                      ++|++|++++|... ..|..+.  .+|+.|+++.|
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            34555555555543 2233332  35666666554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.68  E-value=5.5e-05  Score=72.15  Aligned_cols=126  Identities=22%  Similarity=0.178  Sum_probs=84.2

Q ss_pred             ceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCC
Q 002435          533 EILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGN  612 (922)
Q Consensus       533 ~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~  612 (922)
                      +.++|.+.++...  ..++.+..+...+||++|.+..  -..|..++.|.+|.|++|+|+.+.|.--.-+++|+.|.|.+
T Consensus        22 ~e~~LR~lkip~i--enlg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   22 RELDLRGLKIPVI--ENLGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             cccccccccccch--hhccccccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            4455555555422  1133333467778888888853  24567788888888888888887777666778888889988


Q ss_pred             CcCccCcc-hhhcCCCCCCEEEcCCCcccccCC-CCCCCCCCCCccEEEccC
Q 002435          613 NQISGTFP-SWLGTLRELNVLILKSNKLHGMIR-EPNTGCGFPELRIIDLSN  662 (922)
Q Consensus       613 N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~~~l~~L~~LdLs~  662 (922)
                      |+|..... .-+..||.|+.|.+-+|+....-- .....+.+|+|+.||...
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            88764321 336678888888888888764311 112235678888888765

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.67  E-value=3.1e-05  Score=55.78  Aligned_cols=38  Identities=32%  Similarity=0.531  Sum_probs=32.8

Q ss_pred             cceEEEeccccccccCcccccccCCCCEEeCCCcccccc
Q 002435          730 FLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGH  768 (922)
Q Consensus       730 ~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~  768 (922)
                      .|+.|++++|+|+ .+|..+++|++|+.|++++|+++..
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence            5889999999999 6787899999999999999999853

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.57  E-value=0.00024  Score=77.18  Aligned_cols=76  Identities=16%  Similarity=0.237  Sum_probs=49.8

Q ss_pred             ccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCC-cccccCCCCCCCCCCC
Q 002435          575 FLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSN-KLHGMIREPNTGCGFP  653 (922)
Q Consensus       575 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~  653 (922)
                      +..+..++.|++++|.++. +| .+  -++|+.|+++++.--..+|..+  .++|+.|++++| .+.. +|        +
T Consensus        48 ~~~~~~l~~L~Is~c~L~s-LP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-LP--------~  112 (426)
T PRK15386         48 IEEARASGRLYIKDCDIES-LP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-LP--------E  112 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcc-cC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-cc--------c
Confidence            4456889999999998874 45 22  2469999998854334566544  257888888888 4432 22        3


Q ss_pred             CccEEEccCCcC
Q 002435          654 ELRIIDLSNNRF  665 (922)
Q Consensus       654 ~L~~LdLs~N~l  665 (922)
                      +|+.|++++|..
T Consensus       113 sLe~L~L~~n~~  124 (426)
T PRK15386        113 SVRSLEIKGSAT  124 (426)
T ss_pred             ccceEEeCCCCC
Confidence            477777776553

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.52  E-value=5.6e-05  Score=89.22  Aligned_cols=152  Identities=26%  Similarity=0.326  Sum_probs=104.7

Q ss_pred             CCCCCEEECCCCCCCC-cCchhhcC-CCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhcc
Q 002435          135 LSRLSYLNLSSAGFFG-QIPSEILE-LSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLA  212 (922)
Q Consensus       135 l~~L~~L~Ls~n~l~~-~~p~~l~~-l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~  212 (922)
                      -.+|++||+++..... .-|..++. ||.|++|.+++-.+      ....+.....++++|+.||+++++++..  ..++
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~------~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS  192 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF------DNDDFSQLCASFPNLRSLDISGTNISNL--SGIS  192 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee------cchhHHHHhhccCccceeecCCCCccCc--HHHh
Confidence            4678888888865432 23344554 88899998887552      1233566778889999999999888764  6788


Q ss_pred             CCCCCCEEeccCccCCc-cCccccCCCCCCCEEeCcCCCCCCCc--c----cccCCCCCCcEEEcccCCCCCCchhhh-h
Q 002435          213 NLSSLTLLSLSGCELRG-RIPSLLGNLTKLMYLDLSFNNLLGEL--P----TSIGNLDCLKRLDISWNELSGELPASI-G  284 (922)
Q Consensus       213 ~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~--~----~~l~~l~~L~~L~L~~n~l~~~~~~~l-~  284 (922)
                      ++++|++|.+.+=.+.. ..-..+.++++|+.||+|........  .    +.-..+|+|+.||.+++.+...+-+.+ .
T Consensus       193 ~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~  272 (699)
T KOG3665|consen  193 RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN  272 (699)
T ss_pred             ccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH
Confidence            88999999888766552 22345678999999999987654321  1    223458999999999998876554443 3


Q ss_pred             CCCCCCEEEc
Q 002435          285 NLASLEQLEL  294 (922)
Q Consensus       285 ~l~~L~~L~L  294 (922)
                      ..++|+.+.+
T Consensus       273 sH~~L~~i~~  282 (699)
T KOG3665|consen  273 SHPNLQQIAA  282 (699)
T ss_pred             hCccHhhhhh
Confidence            4556665543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.49  E-value=7.4e-05  Score=88.21  Aligned_cols=152  Identities=20%  Similarity=0.217  Sum_probs=107.8

Q ss_pred             CCCCCEEEcCCCCCCCcccccCCChhHHH-hcCCCCCEEEcCCCcCCCC-CchhccCCCCCCEEeccCccCCccCccccC
Q 002435          159 LSNLVSLDLSHNSYYNLIELKEPNLGNLV-KKLTNLKELALGGVTISSP-IPHSLANLSSLTLLSLSGCELRGRIPSLLG  236 (922)
Q Consensus       159 l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~-~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~  236 (922)
                      -.+|++||+++...   +  . ...|..+ .-+|+|+.|.+.+-.+... .-....++|+|..||+|+++++..  ..++
T Consensus       121 r~nL~~LdI~G~~~---~--s-~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS  192 (699)
T KOG3665|consen  121 RQNLQHLDISGSEL---F--S-NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGIS  192 (699)
T ss_pred             HHhhhhcCccccch---h--h-ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHh
Confidence            36899999999753   1  1 3333333 4579999999999776543 344556889999999999999854  7789


Q ss_pred             CCCCCCEEeCcCCCCCC-CcccccCCCCCCcEEEcccCCCCCCc--h----hhhhCCCCCCEEEccCCCCCCCCcccc-c
Q 002435          237 NLTKLMYLDLSFNNLLG-ELPTSIGNLDCLKRLDISWNELSGEL--P----ASIGNLASLEQLELSLNRFRGKTPHSM-G  308 (922)
Q Consensus       237 ~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--~----~~l~~l~~L~~L~L~~n~l~~~~~~~l-~  308 (922)
                      ++++|+.|.+.+-.+.. ..-..+.+|++|+.||+|........  .    +.-..+|+|+.||.+++.+....-+.+ .
T Consensus       193 ~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~  272 (699)
T KOG3665|consen  193 RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN  272 (699)
T ss_pred             ccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH
Confidence            99999999998877763 23346778999999999987655321  1    112358999999999988776544332 3


Q ss_pred             CCCCCcEEEe
Q 002435          309 NFTRLYWLSL  318 (922)
Q Consensus       309 ~l~~L~~L~L  318 (922)
                      ..++|+.+..
T Consensus       273 sH~~L~~i~~  282 (699)
T KOG3665|consen  273 SHPNLQQIAA  282 (699)
T ss_pred             hCccHhhhhh
Confidence            3445554443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.18  E-value=0.00063  Score=65.09  Aligned_cols=66  Identities=26%  Similarity=0.265  Sum_probs=27.0

Q ss_pred             cCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCcccc
Q 002435          332 GNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLS  398 (922)
Q Consensus       332 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~  398 (922)
                      ..++.|.+|.+.+|+|+...|.--..+++|+.|.+.+|++....+.... ..+|+|++|.+-+|.++
T Consensus        61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL-a~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen   61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPL-ASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchh-ccCCccceeeecCCchh
Confidence            3344444444444444433333333334444444444444322222211 33444444444444433

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.68  E-value=0.0031  Score=58.32  Aligned_cols=36  Identities=19%  Similarity=0.232  Sum_probs=12.0

Q ss_pred             ccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEc
Q 002435          234 LLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDI  270 (922)
Q Consensus       234 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  270 (922)
                      .|.++++|+.+.+..+ +.......|.++++|+.+.+
T Consensus        30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~   65 (129)
T PF13306_consen   30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITF   65 (129)
T ss_dssp             TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE
T ss_pred             hccccccccccccccc-ccccceeeeecccccccccc
Confidence            3444444444444332 32222233444434444444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.68  E-value=0.0037  Score=57.80  Aligned_cols=83  Identities=17%  Similarity=0.185  Sum_probs=31.7

Q ss_pred             ccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCC
Q 002435          234 LLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRL  313 (922)
Q Consensus       234 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  313 (922)
                      .|.++++|+.+.+.. .+...-...|.++++|+.+.+..+ +...-..+|.++++|+.+.+.. .+.......|..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            344555555555543 333333344555555665555543 3322233444554555555543 2222223344444455


Q ss_pred             cEEEee
Q 002435          314 YWLSLA  319 (922)
Q Consensus       314 ~~L~L~  319 (922)
                      +.+.+.
T Consensus        84 ~~i~~~   89 (129)
T PF13306_consen   84 KNIDIP   89 (129)
T ss_dssp             CEEEET
T ss_pred             cccccC
Confidence            555443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.63  E-value=0.00097  Score=66.75  Aligned_cols=61  Identities=31%  Similarity=0.319  Sum_probs=28.8

Q ss_pred             CCCCCEEeccCccCCccCccccCCCCCCCEEeCcCC--CCCCCcccccCCCCCCcEEEcccCCCC
Q 002435          214 LSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFN--NLLGELPTSIGNLDCLKRLDISWNELS  276 (922)
Q Consensus       214 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~L~~n~l~  276 (922)
                      +..|+.|++.+..++..  ..+-.+++|++|.++.|  ++.+.++-....+++|++|++++|++.
T Consensus        42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            34444555554444321  23344555555555555  333333333334455555555555543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.57  E-value=0.00084  Score=78.08  Aligned_cols=16  Identities=25%  Similarity=0.434  Sum_probs=9.3

Q ss_pred             ccCCCCCceEecCCCc
Q 002435          331 FGNLRSLEGLDISECK  346 (922)
Q Consensus       331 l~~l~~L~~L~Ls~n~  346 (922)
                      ...+++++.+.+..+.
T Consensus       358 ~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  358 LRSCPKLTDLSLSYCG  373 (482)
T ss_pred             HhcCCCcchhhhhhhh
Confidence            3455666666666655

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.47  E-value=0.00056  Score=79.54  Aligned_cols=110  Identities=29%  Similarity=0.267  Sum_probs=49.0

Q ss_pred             cCCCCCEEEcCCCcCCCC--CchhccCCCCCCEEeccCc-cCCccCc----cccCCCCCCCEEeCcCCC-CCCCcccccC
Q 002435          189 KLTNLKELALGGVTISSP--IPHSLANLSSLTLLSLSGC-ELRGRIP----SLLGNLTKLMYLDLSFNN-LLGELPTSIG  260 (922)
Q Consensus       189 ~l~~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~Ls~n-~l~~~~~----~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~  260 (922)
                      .++.|+.|.+.++.-...  .-.....++.|+.|+++++ ......+    .....+++|+.|+++++. +++..-..++
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            355666666555532222  2233445566666666552 1111111    122334555566665555 3333222222


Q ss_pred             C-CCCCcEEEcccCC-CCCC-chhhhhCCCCCCEEEccCCC
Q 002435          261 N-LDCLKRLDISWNE-LSGE-LPASIGNLASLEQLELSLNR  298 (922)
Q Consensus       261 ~-l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L~L~~n~  298 (922)
                      . +++|++|.+.++. +++. +-.....+++|++|+++++.
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            2 4555555555554 3322 12222345555555555544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.43  E-value=0.00022  Score=71.27  Aligned_cols=85  Identities=27%  Similarity=0.249  Sum_probs=51.8

Q ss_pred             CCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCc-ccccccCCCCCceE
Q 002435          262 LDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGE-LPASFGNLRSLEGL  340 (922)
Q Consensus       262 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L  340 (922)
                      +.+.+.|+..+|.+++.  ....+++.|+.|.|+-|+|+...|  +..|++|++|+|..|.|... --..+.++|+|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            44566777777777632  335577778888888777775443  55666777777777666531 11234555666666


Q ss_pred             ecCCCccCcc
Q 002435          341 DISECKFSSQ  350 (922)
Q Consensus       341 ~Ls~n~l~~~  350 (922)
                      .|..|.-.+.
T Consensus        94 WL~ENPCc~~  103 (388)
T KOG2123|consen   94 WLDENPCCGE  103 (388)
T ss_pred             hhccCCcccc
Confidence            6666554443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.05  E-value=0.0046  Score=62.05  Aligned_cols=67  Identities=27%  Similarity=0.337  Sum_probs=31.5

Q ss_pred             ccCCCCCcEEECCCC--cCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCC
Q 002435          599 LVNCSSLKFLDLGNN--QISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFT  666 (922)
Q Consensus       599 l~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~  666 (922)
                      |..+++|+.|+++.|  ++++-.+.....+++|++|++++|+++-+ ...-....+++|..||+.+|.-+
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l-stl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL-STLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc-cccchhhhhcchhhhhcccCCcc
Confidence            344445555555555  34333333334445555555555555421 01111133556666777666544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.90  E-value=0.00044  Score=69.13  Aligned_cols=87  Identities=26%  Similarity=0.261  Sum_probs=54.7

Q ss_pred             CCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCc-hhhhhCCCCCCEE
Q 002435          214 LSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGEL-PASIGNLASLEQL  292 (922)
Q Consensus       214 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L  292 (922)
                      +.+.++|++.+|.+.++  ....+|+.|+.|.||-|+|+..  ..+..|++|++|+|..|.|...- -..+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            34556667777776643  2345677777777777777644  34667777777777777776321 1235567777777


Q ss_pred             EccCCCCCCCCc
Q 002435          293 ELSLNRFRGKTP  304 (922)
Q Consensus       293 ~L~~n~l~~~~~  304 (922)
                      -|..|.-.+..+
T Consensus        94 WL~ENPCc~~ag  105 (388)
T KOG2123|consen   94 WLDENPCCGEAG  105 (388)
T ss_pred             hhccCCcccccc
Confidence            777766555444

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.60  E-value=0.0045  Score=37.03  Aligned_cols=12  Identities=42%  Similarity=0.639  Sum_probs=5.3

Q ss_pred             CCEEeCCCcccc
Q 002435          755 LQVLSLANNSLH  766 (922)
Q Consensus       755 L~~L~Ls~N~l~  766 (922)
                      |++|||++|+|+
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.57  E-value=0.0052  Score=36.75  Aligned_cols=20  Identities=45%  Similarity=0.742  Sum_probs=10.3

Q ss_pred             CCEEeCCCCcCcccCcccccC
Q 002435          779 LESLDLSNNKFSGQIPQQLVD  799 (922)
Q Consensus       779 L~~L~Ls~N~l~g~ip~~l~~  799 (922)
                      |+.||||+|+|+ .+|..|++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            455555555555 44444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.87  E-value=0.00087  Score=75.86  Aligned_cols=88  Identities=27%  Similarity=0.320  Sum_probs=47.5

Q ss_pred             CCCCCEEeCcCCCCCCC----cccccCCCCC-CcEEEcccCCCCCC----chhhhhCC-CCCCEEEccCCCCCCCCcc--
Q 002435          238 LTKLMYLDLSFNNLLGE----LPTSIGNLDC-LKRLDISWNELSGE----LPASIGNL-ASLEQLELSLNRFRGKTPH--  305 (922)
Q Consensus       238 l~~L~~L~Ls~n~l~~~----~~~~l~~l~~-L~~L~L~~n~l~~~----~~~~l~~l-~~L~~L~L~~n~l~~~~~~--  305 (922)
                      ..++++|.+++|.++..    +...+...+. +..|++..|.+.+.    ....+..+ ..+++++++.|.++.....  
T Consensus       203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L  282 (478)
T KOG4308|consen  203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL  282 (478)
T ss_pred             cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence            45566666666655421    1122333344 55566666666532    12233334 4567777777777654433  


Q ss_pred             --cccCCCCCcEEEeeccCCCC
Q 002435          306 --SMGNFTRLYWLSLASNDFSG  325 (922)
Q Consensus       306 --~l~~l~~L~~L~L~~n~l~~  325 (922)
                        .+..++.++.+.+++|.+..
T Consensus       283 ~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  283 AEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHhhhHHHHHhhcccCcccc
Confidence              33455677777777777653

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.41  E-value=0.001  Score=75.35  Aligned_cols=136  Identities=26%  Similarity=0.385  Sum_probs=65.0

Q ss_pred             CCEEeccCccCCcc----CccccCCCCCCCEEeCcCCCCCC----Cccc----ccCCCCCCcEEEcccCCCCCC----ch
Q 002435          217 LTLLSLSGCELRGR----IPSLLGNLTKLMYLDLSFNNLLG----ELPT----SIGNLDCLKRLDISWNELSGE----LP  280 (922)
Q Consensus       217 L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~----~~~~----~l~~l~~L~~L~L~~n~l~~~----~~  280 (922)
                      +++|++..|.+++.    +.+.+.....++.++++.|.+..    .++.    .+....++++|++.+|.++..    +.
T Consensus       146 l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~  225 (478)
T KOG4308|consen  146 LQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLD  225 (478)
T ss_pred             HHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHH
Confidence            44444444444322    23334445555555665555421    1111    223355666666666665521    11


Q ss_pred             hhhhCCCC-CCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCC-CCCceEecCCCccCcc----Cchh
Q 002435          281 ASIGNLAS-LEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNL-RSLEGLDISECKFSSQ----IPSS  354 (922)
Q Consensus       281 ~~l~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~----~~~~  354 (922)
                      ..+...++ +..|++..|.+.+....                    .....+..+ ..+++++++.|.++..    +...
T Consensus       226 ~~l~~~~~~~~el~l~~n~l~d~g~~--------------------~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~  285 (478)
T KOG4308|consen  226 EVLASGESLLRELDLASNKLGDVGVE--------------------KLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEV  285 (478)
T ss_pred             HHHhccchhhHHHHHHhcCcchHHHH--------------------HHHHHhcccchhhhhhhhhcCCccccchHHHHHH
Confidence            22333333 44455555554432111                    111222333 4566667777666643    3344


Q ss_pred             hcCCCCccEEEccCCCCc
Q 002435          355 LRNLAQLKFLEFSHNNFS  372 (922)
Q Consensus       355 l~~l~~L~~L~L~~n~l~  372 (922)
                      +..++.++++.++.|.+.
T Consensus       286 l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  286 LVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HhhhHHHHHhhcccCccc
Confidence            556667777777777665

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.96  E-value=0.32  Score=30.30  Aligned_cols=17  Identities=47%  Similarity=0.579  Sum_probs=9.3

Q ss_pred             CCCCEEeCCCCcCcccC
Q 002435          777 TGLESLDLSNNKFSGQI  793 (922)
Q Consensus       777 ~~L~~L~Ls~N~l~g~i  793 (922)
                      ++|++|+|++|+|+...
T Consensus         2 ~~L~~L~L~~N~l~~lp   18 (26)
T smart00370        2 PNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCEEECCCCcCCcCC
Confidence            45555555555555443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.96  E-value=0.32  Score=30.30  Aligned_cols=17  Identities=47%  Similarity=0.579  Sum_probs=9.3

Q ss_pred             CCCCEEeCCCCcCcccC
Q 002435          777 TGLESLDLSNNKFSGQI  793 (922)
Q Consensus       777 ~~L~~L~Ls~N~l~g~i  793 (922)
                      ++|++|+|++|+|+...
T Consensus         2 ~~L~~L~L~~N~l~~lp   18 (26)
T smart00369        2 PNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCEEECCCCcCCcCC
Confidence            45555555555555443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.58  E-value=0.025  Score=55.54  Aligned_cols=83  Identities=18%  Similarity=0.120  Sum_probs=71.4

Q ss_pred             ccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEec
Q 002435          729 NFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNV  808 (922)
Q Consensus       729 ~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~l  808 (922)
                      ...+.||++.|++. ..-..|.-++.|..||+|.|.+. ..|..++.+..+..+++.+|.++ ..|.++..++.++++++
T Consensus        42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence            34678999999987 34456777889999999999987 67889999999999999999998 46889999999999999


Q ss_pred             cCCccc
Q 002435          809 SNNNLT  814 (922)
Q Consensus       809 s~N~ls  814 (922)
                      -.|.+.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            999865

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.12  E-value=0.41  Score=29.82  Aligned_cols=23  Identities=30%  Similarity=0.351  Sum_probs=16.3

Q ss_pred             cCCCCEEeCCCccccccCCcccc
Q 002435          752 LKGLQVLSLANNSLHGHILSCLG  774 (922)
Q Consensus       752 l~~L~~L~Ls~N~l~~~ip~~l~  774 (922)
                      |++|+.|+|++|+|+...+..|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46788888888888866555443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.12  E-value=0.41  Score=29.82  Aligned_cols=23  Identities=30%  Similarity=0.351  Sum_probs=16.3

Q ss_pred             cCCCCEEeCCCccccccCCcccc
Q 002435          752 LKGLQVLSLANNSLHGHILSCLG  774 (922)
Q Consensus       752 l~~L~~L~Ls~N~l~~~ip~~l~  774 (922)
                      |++|+.|+|++|+|+...+..|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46788888888888866555443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=85.68  E-value=0.58  Score=25.87  Aligned_cols=10  Identities=20%  Similarity=0.242  Sum_probs=3.0

Q ss_pred             cEEEecCCCC
Q 002435          412 NFVGLRSCNL  421 (922)
Q Consensus       412 ~~L~L~~~~l  421 (922)
                      +.|++++|++
T Consensus         4 ~~L~l~~n~L   13 (17)
T PF13504_consen    4 RTLDLSNNRL   13 (17)
T ss_dssp             SEEEETSS--
T ss_pred             CEEECCCCCC
Confidence            3333333333

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.15  E-value=0.18  Score=48.83  Aligned_cols=82  Identities=22%  Similarity=0.278  Sum_probs=40.5

Q ss_pred             CCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCc-CCCCCchhccCCC
Q 002435          137 RLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVT-ISSPIPHSLANLS  215 (922)
Q Consensus       137 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~-~~~~~~~~l~~l~  215 (922)
                      .++.+|-+++.+..+--..+.+++.++.|.+.+|..     +++..+...-.-.++|+.|++++|. |+......+..++
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~-----~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lk  176 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKY-----FDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLK  176 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccc-----hhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhh
Confidence            356677777666555555666677777777776642     1112221111223444444444443 4443334444444


Q ss_pred             CCCEEecc
Q 002435          216 SLTLLSLS  223 (922)
Q Consensus       216 ~L~~L~Ls  223 (922)
                      +|+.|.+.
T Consensus       177 nLr~L~l~  184 (221)
T KOG3864|consen  177 NLRRLHLY  184 (221)
T ss_pred             hhHHHHhc
Confidence            44444443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.49  E-value=0.25  Score=47.95  Aligned_cols=60  Identities=22%  Similarity=0.229  Sum_probs=31.6

Q ss_pred             CCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCc
Q 002435          336 SLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSN  395 (922)
Q Consensus       336 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n  395 (922)
                      .++.+|-+++.|..+--+.+..++.++.|.+.+|.--++-.......-.++|+.|++++|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC  161 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGC  161 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCC
Confidence            455666666666554445555666666666666554433332222233455566666555

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=83.09  E-value=0.19  Score=30.64  Aligned_cols=13  Identities=62%  Similarity=0.922  Sum_probs=4.4

Q ss_pred             CCCEEeCCCCcCc
Q 002435          778 GLESLDLSNNKFS  790 (922)
Q Consensus       778 ~L~~L~Ls~N~l~  790 (922)
                      +|++|+|++|+|+
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            3344444444433

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=82.19  E-value=0.029  Score=55.03  Aligned_cols=88  Identities=25%  Similarity=0.222  Sum_probs=54.8

Q ss_pred             hccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCC
Q 002435          210 SLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASL  289 (922)
Q Consensus       210 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  289 (922)
                      .+......+.||++.|++. ..-..++.++.|..|+++.|.+. ..|+.++....++.+++..|..+ ..|.++...+++
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            3455566677777777655 22334555666667777766665 45666666666666666666665 556666666666


Q ss_pred             CEEEccCCCCC
Q 002435          290 EQLELSLNRFR  300 (922)
Q Consensus       290 ~~L~L~~n~l~  300 (922)
                      +++++..|.+.
T Consensus       114 k~~e~k~~~~~  124 (326)
T KOG0473|consen  114 KKNEQKKTEFF  124 (326)
T ss_pred             chhhhccCcch
Confidence            66666666543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=81.92  E-value=0.23  Score=30.29  Aligned_cols=18  Identities=28%  Similarity=0.375  Sum_probs=9.9

Q ss_pred             CCCCEEeCCCccccccCC
Q 002435          753 KGLQVLSLANNSLHGHIL  770 (922)
Q Consensus       753 ~~L~~L~Ls~N~l~~~ip  770 (922)
                      ++|++|+|++|+|++...
T Consensus         2 ~~L~~L~l~~n~i~~~g~   19 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGA   19 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHH
T ss_pred             CCCCEEEccCCcCCHHHH
Confidence            456677777777665433

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	922
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-44
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-44
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-19
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		3e-07
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		5e-07
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		8e-04
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		9e-07
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		6e-04
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		1e-05
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		2e-05
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		4e-05
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		4e-05
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		1e-04
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		5e-05
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		1e-04
4eco_A	636	Crystal Structure Of A Hypothetical Protein (Bacegg		2e-04
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		2e-04
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		3e-04
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		4e-04
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		4e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		6e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  178 bits (452), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 198/695 (28%), Positives = 295/695 (42%), Gaps = 117/695 (16%)
Query: 227 LRGRIPSL--LGNLTKLMYLDLSFNNLLGELPTSIGN---LDCLKRLDISWNELSGELPA 281
           L G + +L  LG+ + L +L++S N L  + P  +     L+ L+ LD+S N +SG    
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDLSANSISGA--N 167
Query: 282 SIG-----NLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRS 336
            +G         L+ L +S N+  G     +     L +L ++SN+FS  +P   G+  +
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSA 224
Query: 337 LEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNR 396
           L+ LDIS  K S     ++    +LK L  S N F GPI      +  K L++LSL+ N+
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP----LPLKSLQYLSLAENK 280
Query: 397 LSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQ-HYLEVLDLSCNKIHGKVPKWLIEP 455
                           F G       E P+FL      L  LDLS N  +G VP +    
Sbjct: 281 ----------------FTG-------EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317
Query: 456 -----------------------SMQNFSYLNLSHNFLIGFYQHPMFFPRNYDG--FTLD 490
                                   M+    L+LS N   G     +    N      TLD
Sbjct: 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL---TNLSASLLTLD 374
Query: 491 LSYNYLQGPL-----PVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGL 545
           LS N   GP+       P    +   + NN  TGKIP  + N S  L  L LS+N LSG 
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGT 433
Query: 546 LPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSL 605
           +P  L + S  L  L L  N   G IPQ  +  ++L  + L  N L G IP  L NC++L
Sbjct: 434 IPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 606 KFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRF 665
            ++ L NN+++G  P W+G L  L +L L +N   G I      C    L  +DL+ N F
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC--RSLIWLDLNTNLF 550
Query: 666 TGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYD 725
            G +P+  F+    +     +  RY+           + A  + ++    S +   +S  
Sbjct: 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610
Query: 726 KVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLS 785
              N      ++S  + G    +  N   +  L ++ N L G+I   +G++  L  L+L 
Sbjct: 611 NPCN------ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 664
Query: 786 NNKFSGQIPQQLVDLTFLEFFNVSNNNLT------------------------GPIPQGN 821
           +N  SG IP ++ DL  L   ++S+N L                         GPIP+  
Sbjct: 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 724
Query: 822 QFPTFDKTSFNGNLGLCGKPLPKECENDEAPTNED 856
           QF TF    F  N GLCG PLP+ C+    P+N D
Sbjct: 725 QFETFPPAKFLNNPGLCGYPLPR-CD----PSNAD 754

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  178 bits (452), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 198/695 (28%), Positives = 295/695 (42%), Gaps = 117/695 (16%)
Query: 227 LRGRIPSL--LGNLTKLMYLDLSFNNLLGELPTSIGN---LDCLKRLDISWNELSGELPA 281
           L G + +L  LG+ + L +L++S N L  + P  +     L+ L+ LD+S N +SG    
Sbjct: 109 LSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDLSANSISGA--N 164
Query: 282 SIG-----NLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRS 336
            +G         L+ L +S N+  G     +     L +L ++SN+FS  +P   G+  +
Sbjct: 165 VVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSA 221
Query: 337 LEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNR 396
           L+ LDIS  K S     ++    +LK L  S N F GPI      +  K L++LSL+ N+
Sbjct: 222 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP----LPLKSLQYLSLAENK 277
Query: 397 LSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQ-HYLEVLDLSCNKIHGKVPKWLIEP 455
                           F G       E P+FL      L  LDLS N  +G VP +    
Sbjct: 278 ----------------FTG-------EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 314
Query: 456 -----------------------SMQNFSYLNLSHNFLIGFYQHPMFFPRNYDG--FTLD 490
                                   M+    L+LS N   G     +    N      TLD
Sbjct: 315 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL---TNLSASLLTLD 371
Query: 491 LSYNYLQGPL-----PVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGL 545
           LS N   GP+       P    +   + NN  TGKIP  + N S  L  L LS+N LSG 
Sbjct: 372 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGT 430
Query: 546 LPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSL 605
           +P  L + S  L  L L  N   G IPQ  +  ++L  + L  N L G IP  L NC++L
Sbjct: 431 IPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 489
Query: 606 KFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRF 665
            ++ L NN+++G  P W+G L  L +L L +N   G I      C    L  +DL+ N F
Sbjct: 490 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC--RSLIWLDLNTNLF 547
Query: 666 TGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYD 725
            G +P+  F+    +     +  RY+           + A  + ++    S +   +S  
Sbjct: 548 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 607
Query: 726 KVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLS 785
              N      ++S  + G    +  N   +  L ++ N L G+I   +G++  L  L+L 
Sbjct: 608 NPCN------ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 661
Query: 786 NNKFSGQIPQQLVDLTFLEFFNVSNNNLT------------------------GPIPQGN 821
           +N  SG IP ++ DL  L   ++S+N L                         GPIP+  
Sbjct: 662 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 721
Query: 822 QFPTFDKTSFNGNLGLCGKPLPKECENDEAPTNED 856
           QF TF    F  N GLCG PLP+ C+    P+N D
Sbjct: 722 QFETFPPAKFLNNPGLCGYPLPR-CD----PSNAD 751

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 108/255 (42%), Gaps = 31/255 (12%)
Query: 589 NLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNT 648
           N L G IP ++   + L +L + +  +SG  P +L  ++ L  L    N L G +  P +
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL--PPS 144
Query: 649 GCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGI 708
               P L  I    NR +G +P  Y         +  S  R + G I P    ++A L  
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPP----TFANLN- 198
Query: 709 YDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGH 768
                                 L  V LS N  +G+      + K  Q + LA NSL   
Sbjct: 199 ----------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL-AF 235
Query: 769 ILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDK 828
            L  +G    L  LDL NN+  G +PQ L  L FL   NVS NNL G IPQG     FD 
Sbjct: 236 DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDV 295
Query: 829 TSFNGNLGLCGKPLP 843
           +++  N  LCG PLP
Sbjct: 296 SAYANNKCLCGSPLP 310

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 70/144 (48%), Gaps = 6/144 (4%)
Query: 239 TKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIG-NLASLEQLELSLN 297
           T L YLDLSFN ++      +G L+ L+ LD   + L      S+  +L +L  L++S  
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431
Query: 298 RFRGKTPHSMGNFTRLYWLSLASNDFSGE-LPASFGNLRSLEGLDISECKFSSQIPSSLR 356
             R          + L  L +A N F    LP  F  LR+L  LD+S+C+     P++  
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491
Query: 357 NLAQLKFLEFSHNNFSGPIDLDMF 380
           +L+ L+ L  SHNNF     LD F
Sbjct: 492 SLSSLQVLNMSHNNF---FSLDTF 512

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 70/144 (48%), Gaps = 6/144 (4%)
Query: 239 TKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIG-NLASLEQLELSLN 297
           T L YLDLSFN ++      +G L+ L+ LD   + L      S+  +L +L  L++S  
Sbjct: 78  TSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136
Query: 298 RFRGKTPHSMGNFTRLYWLSLASNDFSGE-LPASFGNLRSLEGLDISECKFSSQIPSSLR 356
             R          + L  L +A N F    LP  F  LR+L  LD+S+C+     P++  
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 196
Query: 357 NLAQLKFLEFSHNNFSGPIDLDMF 380
           +L+ L+ L  SHNNF     LD F
Sbjct: 197 SLSSLQVLNMSHNNF---FSLDTF 217

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 126/325 (38%), Gaps = 67/325 (20%)
Query: 264 CLKRLDISWNEL----SGELPASIGNLASLEQLELSLNRFRGKTPHSM-GNFTRLYWLSL 318
           C  R   S  E+     G      G  +S  +LEL  N+ +   PH +    T+L  LSL
Sbjct: 1   CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSL 59
Query: 319 ASN--DFSGELPASFGNLRSLEGLDISECKFSSQIP--SSLRNLAQLKFLEFSHNNFSGP 374
           +SN   F G    S     SL+ LD+S   F+  I   S+   L QL+ L+F H+N    
Sbjct: 60  SSNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQM 116
Query: 375 IDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNE--FPNFLKNQH 432
            +  +FL + ++L +L +S     +    IFN       + +   +  E   P+      
Sbjct: 117 SEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175
Query: 433 YLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLS 492
            L  LDLS  ++    P      S+ +   LN+SHN                + F+LD  
Sbjct: 176 NLTFLDLSQCQLEQLSPTAF--NSLSSLQVLNMSHN----------------NFFSLD-- 215
Query: 493 YNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDN 552
                                        P+   NS   L++LD S N++     Q L +
Sbjct: 216 ---------------------------TFPYKCLNS---LQVLDYSLNHIMTSKKQELQH 245
Query: 553 FSDHLSILDLQHNKF-CGSIPQTFL 576
           F   L+ L+L  N F C    Q+FL
Sbjct: 246 FPSSLAFLNLTQNDFACTCEHQSFL 270

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 122/308 (39%), Gaps = 42/308 (13%)
Query: 82  ENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEW-LDLAFNYFICSEIPPEIIXXXXXXX 140
            N G++ K D   S L+G  N +   F+L +L++ LD   + F C               
Sbjct: 262 RNEGNLEKFD--KSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNC--------------- 304
Query: 141 XXXXXAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNL-VKKLTNLKELAL- 198
                   F  +   I  +      D S+N  +  +EL     G     KL +LK L   
Sbjct: 305 --LTNVSSFSLVSVTIERVK-----DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 357
Query: 199 ---GGVTISS-PIPHXXXXXXXXXXXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGE 254
              GG   S   +P               GC  +    ++      L YLDLSFN ++  
Sbjct: 358 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTI-----SLKYLDLSFNGVITM 412
Query: 255 LPTSIGNLDCLKRLDISWNELSGELPASIG-NLASLEQLELSLNRFRGKTPHSMGNFTRL 313
               +G L+ L+ LD   + L      S+  +L +L  L++S    R          + L
Sbjct: 413 SSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 471
Query: 314 YWLSLASNDFSGE-LPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFS 372
             L +A N F    LP  F  LR+L  LD+S+C+     P++  +L+ L+ L  SHNNF 
Sbjct: 472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF- 530
Query: 373 GPIDLDMF 380
               LD F
Sbjct: 531 --FSLDTF 536

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 125/491 (25%), Positives = 195/491 (39%), Gaps = 85/491 (17%)
Query: 259 IGNLDCLKRLDISWNEL-SGELPASIGNLASLEQLELSLNRFRG------KTPHSM---- 307
           IG+L  LK L+++ N + S +LP    NL +LE L+LS N+ +       +  H M    
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203
Query: 308 ---------------GNFT--RLYWLSLASNDFSGELPASFGNLRSLEGLDISEC----- 345
                          G F   RL+ L+L +N     L      ++ L GL++        
Sbjct: 204 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN--FDSLNVMKTCIQGLAGLEVHRLVLGEF 261
Query: 346 -------KFSSQIPSSLRNLAQLKF-LEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRL 397
                  KF       L NL   +F L +      G IDL   L N      +S++  R+
Sbjct: 262 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV 321
Query: 398 SLFTKAIFNTSQKFNF----VGLRSCNLNEFPNF-LKNQHYLEVLDLSCNKIHGKVPKWL 452
             F+         +NF    + L +C   +FP   LK+   L+ L  + NK  G     +
Sbjct: 322 KDFS---------YNFGWQHLELVNCKFGQFPTLKLKS---LKRLTFTSNK-GGNAFSEV 368
Query: 453 IEPSMQNFSYLNLSHNFL--IGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPP-----P 505
             PS++   +L+LS N L   G      F   +     LDLS+N   G + +        
Sbjct: 369 DLPSLE---FLDLSRNGLSFKGCCSQSDFGTISLK--YLDLSFN---GVITMSSNFLGLE 420
Query: 506 QTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHN 565
           Q +H    +++L     F +  S  +L  LD+S+ +         +  S  L +L +  N
Sbjct: 421 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGN 479
Query: 566 KFCGS-IPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISG--TFPSW 622
            F  + +P  F   R+L  +DLS   L+   P +  + SSL+ L++ +N      TFP  
Sbjct: 480 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP-- 537
Query: 623 LGTLRELNVLILKSNKLHGMIREPNTGCGFP-ELRIIDLSNNRFTGKLPSKYFQCWNAMQ 681
              L  L VL    N  H M  +      FP  L  ++L+ N F      + F  W   Q
Sbjct: 538 YKCLNSLQVLDYSLN--HIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQ 595
Query: 682 VVNTSELRYME 692
                E+  ME
Sbjct: 596 RQLLVEVERME 606

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 147/376 (39%), Gaps = 97/376 (25%)
Query: 265 LKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFS 324
           L+ LD++   LS ELP+ +  L++L++L LS N+F      S  NF  L  LS+  N   
Sbjct: 280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 325 GELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNF 384
            EL                           L NL  L+ L+ SH++       ++ L N 
Sbjct: 339 LELGT-----------------------GCLENLENLRELDLSHDDIETSDCCNLQLRNL 375
Query: 385 KHLEHLSLSSNR-LSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNK 443
            HL+ L+LS N  LSL T+A     Q                        LE+LDL+  +
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKECPQ------------------------LELLDLAFTR 411
Query: 444 IHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVP 503
           +  K  +   + ++     LNLSH+                    LD+S   L   LP  
Sbjct: 412 LKVKDAQSPFQ-NLHLLKVLNLSHSL-------------------LDISSEQLFDGLPA- 450
Query: 504 PPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQ 563
               +H  +  N      P      +NSL+ L        G L   + +F D LS +D Q
Sbjct: 451 ---LQHLNLQGN----HFPKGNIQKTNSLQTL--------GRLEILVLSFCD-LSSID-Q 493
Query: 564 HNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWL 623
           H          F S + +  +DLS N L      +L +   + +L+L +N IS   PS L
Sbjct: 494 H---------AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLL 543
Query: 624 GTLRELNVLILKSNKL 639
             L +   + L+ N L
Sbjct: 544 PILSQQRTINLRQNPL 559

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 115/289 (39%), Gaps = 24/289 (8%)
Query: 92  LSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIIXXXXXXXXXXXXAGFFGQ 151
           L+++  +G  + S     L    + DL+ + F C     E+             A     
Sbjct: 242 LTSATFEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQEL----------DLTAAHLNG 291
Query: 152 IPSEILELSNLVSLDLSHNSYYNLIELKE---PNLGNLVKKLTNLKELALGGVTISSPIP 208
           +PS I  +++L  L L+ NS+  L ++     P+L +L  K  N+++L LG   +     
Sbjct: 292 LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIK-GNMRKLDLGTRCLEKLEN 350
Query: 209 HXXXXXXXXXXXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRL 268
                           C L+      L NL  L YL+LS+N  LG    +      L+ L
Sbjct: 351 LQKLDLSHSDIEASDCCNLQ------LKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELL 404
Query: 269 DISWNELSGELPAS-IGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFS-GE 326
           D+++  L  + P S   NL  L  L LS         H +     L  L+L  N F  G 
Sbjct: 405 DVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGS 464
Query: 327 LPAS--FGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSG 373
           +  +     + SLE L +S C   S    +   L  +  L+ SHN+ +G
Sbjct: 465 ISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTG 513

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 101/239 (42%), Gaps = 23/239 (9%)
Query: 583 MIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGM 642
           ++DL +N +         N  +L  L L NN+IS   P     L +L  L L  N+L  +
Sbjct: 56  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115
Query: 643 IRE-PNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVN--TSELR---YMEGMIY 696
             + P T     ELR+ +   N  T K+    F   N M VV   T+ L+      G   
Sbjct: 116 PEKMPKT---LQELRVHE---NEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168
Query: 697 PFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQ 756
               +SY  + I D ++T   +G       +P  LT + L  N+       S+  L  L 
Sbjct: 169 GMKKLSY--IRIADTNITTIPQG-------LPPSLTELHLDGNKITKVDAASLKGLNNLA 219
Query: 757 VLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTG 815
            L L+ NS+       L N   L  L L+NNK   ++P  L D  +++   + NNN++ 
Sbjct: 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 159/406 (39%), Gaps = 85/406 (20%)
Query: 265 LKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFS 324
           L+ LD++   L G LP+ +  L  L++L LS+N F      S  NF  L  L +      
Sbjct: 277 LQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIR----- 330
Query: 325 GELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNF 384
                  GN++ L  L +            L  L  L+ L+ SHN+        + L N 
Sbjct: 331 -------GNVKKLH-LGVG----------CLEKLGNLQTLDLSHNDIEASDCCSLQLKNL 372
Query: 385 KHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKI 444
            HL+ L+LS N                  +GL+S    E P        LE+LDL+  ++
Sbjct: 373 SHLQTLNLSHNEP----------------LGLQSQAFKECPQ-------LELLDLAFTRL 409
Query: 445 HGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPP 504
           H   P+   + ++     LNL++ F                   LD S  +L   LPV  
Sbjct: 410 HINAPQSPFQ-NLHFLQVLNLTYCF-------------------LDTSNQHLLAGLPV-- 447
Query: 505 PQTKHY-LVSNNSLTGKIPFW-ICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDL 562
              +H  L  N+   G I    +  +  SLE+L LS   L  +  Q   +    +S +DL
Sbjct: 448 --LRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGK-MSHVDL 504
Query: 563 QHNKF-CGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPS 621
            HN   C SI    LS    + ++L+ N +    PR L   S    ++L +N +      
Sbjct: 505 SHNSLTCDSIDS--LSHLKGIYLNLAANSINIISPRLLPILSQQSTINLSHNPLD----- 557
Query: 622 WLGTLRELNVLILKSNKLHGMIREPNTGCGF-PELRIIDLSNNRFT 666
              T   ++ L      LH +     T C   P LR + LS+ + +
Sbjct: 558 --CTCSNIHFLTWYKENLHKLEGSEETTCANPPSLRGVKLSDVKLS 601

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 80/210 (38%), Gaps = 40/210 (19%)
Query: 614 QISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKY 673
           Q S T   WLGT  +++   + S  L G+           E R  D+S         S  
Sbjct: 220 QNSTTQSLWLGTFEDIDDEDISSAMLKGLCEMSVESLNLQEHRFSDIS---------STT 270
Query: 674 FQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTG 733
           FQC+  +Q                            +  LT ++   + S  K  N L  
Sbjct: 271 FQCFTQLQ----------------------------ELDLTATHLKGLPSGMKGLNLLKK 302
Query: 734 VILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHI-LSCLGNLTGLESLDLSNNKFSGQ 792
           ++LS N FD     S AN   L  L +  N    H+ + CL  L  L++LDLS+N     
Sbjct: 303 LVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEAS 362
Query: 793 --IPQQLVDLTFLEFFNVSNNNLTGPIPQG 820
                QL +L+ L+  N+S+N   G   Q 
Sbjct: 363 DCCSLQLKNLSHLQTLNLSHNEPLGLQSQA 392

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 101/239 (42%), Gaps = 23/239 (9%)
Query: 583 MIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGM 642
           ++DL +N +         N  +L  L L NN+IS   P     L +L  L L  N+L  +
Sbjct: 56  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115
Query: 643 IRE-PNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVN--TSELR---YMEGMIY 696
             + P T     ELR+ +   N  T K+    F   N M VV   T+ L+      G   
Sbjct: 116 PEKMPKT---LQELRVHE---NEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168
Query: 697 PFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQ 756
               +SY  + I D ++T   +G       +P  LT + L  N+       S+  L  L 
Sbjct: 169 GMKKLSY--IRIADTNITTIPQG-------LPPSLTELHLDGNKITKVDAASLKGLNNLA 219
Query: 757 VLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTG 815
            L L+ NS+       L N   L  L L+NNK   ++P  L D  +++   + NNN++ 
Sbjct: 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 112/299 (37%), Gaps = 29/299 (9%)
Query: 82  ENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEW-LDLAFNYFICSEIPPEIIXXXXXXX 140
            N G++ K D   S L+G  N +   F+L +L++ LD   + F C               
Sbjct: 238 RNEGNLEKFD--KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC--------------- 280
Query: 141 XXXXXAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNL-VKKLTNLKELALG 199
                   F  +   I  +      D S+N  +  +EL     G     KL +LK L   
Sbjct: 281 --LTNVSSFSLVSVTIERVK-----DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 333
Query: 200 GVTISSPIPHXXXXXXXXXXXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSI 259
                +                  G   +G         T L YLDLSFN ++      +
Sbjct: 334 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL 393
Query: 260 GNLDCLKRLDISWNELSGELPASIG-NLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSL 318
           G L+ L+ LD   + L      S+  +L +L  L++S    R          + L  L +
Sbjct: 394 G-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452
Query: 319 ASNDFSGE-LPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPID 376
           A N F    LP  F  LR+L  LD+S+C+     P++  +L+ L+ L  + N      D
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511

>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329) From Bacteroides Eggerthii Dsm 20697 At 2.70 A Resolution Length = 636

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 100/218 (45%), Gaps = 24/218 (11%)
Query: 279 LPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASF-GNLRSL 337
           +  S+     L  LE   N+  GK P + G+  +L  L+LA N  + E+PA+F G    +
Sbjct: 322 VETSLQKXKKLGXLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQV 379
Query: 338 EGLDISECKFSSQIPS--SLRNLAQLKFLEFSHNNFSGPID------LDMFLVNFKHLEH 389
           E L  +  K    IP+    ++++    ++FS+N   G +D      LD       ++  
Sbjct: 380 ENLSFAHNKLK-YIPNIFDAKSVSVXSAIDFSYNEI-GSVDGKNFDPLDPTPFKGINVSS 437
Query: 390 LSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFP---------NFLKNQHYLEVLDLS 440
           ++LS+N++S F K +F+T    + + L    L E P         NF KN + L  +DL 
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIPKNSLKDENENF-KNTYLLTSIDLR 496
Query: 441 CNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPM 478
            NK+  K+       ++     ++LS+N    F   P+
Sbjct: 497 FNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL 533

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 121/521 (23%), Positives = 202/521 (38%), Gaps = 77/521 (14%)
Query: 330 SFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEH 389
           +F NL +L  LD+   K     P + + L  L  L       S  +  D +  N K L  
Sbjct: 68  AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127
Query: 390 LSLSSNRL-SLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLD--------LS 440
           L LS N++ SL+    F    K N   L+S + +    FL  +H LE L         L+
Sbjct: 128 LDLSKNQIRSLYLHPSFG---KLN--SLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182
Query: 441 CNKIHGKVP-KWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGP 499
            N ++ +V   W     M  F  + L    + G            +G+T+D++ N+    
Sbjct: 183 ANSLYSRVSVDW--GKCMNPFRNMVLEILDVSG------------NGWTVDITGNFSNA- 227
Query: 500 LPVPPPQTKHYLVSNNSLTGKIPF----------WICNSSNSLEILDLSYNNLSGLLPQC 549
             +   Q    +++++ +     F          +   + +S+  LDLS+  +  L  + 
Sbjct: 228 --ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285
Query: 550 LDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLD 609
            +   D L +L+L +NK      + F    +L +++LS NLL      +      + ++D
Sbjct: 286 FETLKD-LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344
Query: 610 LGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKL 669
           L  N I+         L +L  L L+ N L        T    P +  I LS N+    L
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-------TTIHFIPSIPDIFLSGNKLV-TL 396
Query: 670 PSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPN 729
           P           +++ SE R +E +   + L+    L I    +   N+    S D+ P+
Sbjct: 397 PKINL----TANLIHLSENR-LENLDILYFLLRVPHLQIL---ILNQNRFSSCSGDQTPS 448
Query: 730 ---FLTGVILSSNRFDGEIPTSIA-----NLKGLQVLSLANNSLHGHILSCLGNLTGLES 781
               L  + L  N       T +       L  LQVL L +N L+        +LT L  
Sbjct: 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG 508
Query: 782 LDLSNNKFS----GQIPQQLVDLTFLEFFNVSNNNLTGPIP 818
           L L++N+ +      +P        LE  ++S N L  P P
Sbjct: 509 LSLNSNRLTVLSHNDLPAN------LEILDISRNQLLAPNP 543

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 66/154 (42%), Gaps = 7/154 (4%)
Query: 244 LDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKT 303
           ++L+F  +   LP S  NLD      +SWN L      S  +   L+ L+LS    +   
Sbjct: 16  MELNFYKIPDNLPFSTKNLD------LSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 69
Query: 304 PHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKF 363
             +  + + L  L L  N        +F  L SL+ L   E   +S     + +L  LK 
Sbjct: 70  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 129
Query: 364 LEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRL 397
           L  +HN       L  +  N  +LEHL LSSN++
Sbjct: 130 LNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSNKI 162

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 66/154 (42%), Gaps = 7/154 (4%)
Query: 244 LDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKT 303
           ++L+F  +   LP S  NLD      +SWN L      S  +   L+ L+LS    +   
Sbjct: 17  MELNFYKIPDNLPFSTKNLD------LSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 70
Query: 304 PHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKF 363
             +  + + L  L L  N        +F  L SL+ L   E   +S     + +L  LK 
Sbjct: 71  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 130
Query: 364 LEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRL 397
           L  +HN       L  +  N  +LEHL LSSN++
Sbjct: 131 LNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSNKI 163

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 236 GNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELS 295
           G L  L  LDLS N L   LP     L  L  LD+S+N L+     ++  L  L++L L 
Sbjct: 74  GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 296 LNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLD 341
            N  +   P  +    +L  LSLA+ND + ELPA  G L  LE LD
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPA--GLLNGLENLD 175

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 99/227 (43%), Gaps = 26/227 (11%)
Query: 149 FGQIPSEILELSNLVSL---DLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISS 205
           FG   +++  L+NL +L   D+S N   ++         +++ KLTNL+ L      IS 
Sbjct: 158 FGNQVTDLKPLANLTTLERLDISSNKVSDI---------SVLAKLTNLESLIATNNQISD 208
Query: 206 PIPHXXXXXXXXXXXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCL 265
             P               G +L+      L +LT L  LDL+ N +    P  +  L  L
Sbjct: 209 ITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKL 262
Query: 266 KRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSG 325
             L +  N++S   P  +  L +L  LEL+ N+    +P  + N   L +L+L  N+ S 
Sbjct: 263 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 318
Query: 326 ELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFS 372
             P S  +L  L+ L  S  K S    SSL NL  + +L   HN  S
Sbjct: 319 ISPVS--SLTKLQRLFFSNNKVSD--VSSLANLTNINWLSAGHNQIS 361

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	922
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-100
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-83
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-55
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-79
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-77
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-69
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-66
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-56
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-53
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-41
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-34
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-78
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-75
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-58
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-52
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-51
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-75
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-63
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-43
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-31
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-19
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-69
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-61
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-56
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-49
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-46
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-67
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-67
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-62
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-62
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-60
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-67
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-60
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-35
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-55
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-46
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-30
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-30
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-51
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-47
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-45
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-45
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-42
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-42
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-31
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-27
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-41
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-38
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-35
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-30
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-39
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-34
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-36
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-35
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-31
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-34
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-33
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-32
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-31
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-33
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-33
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-31
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-30
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-29
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-29
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-24
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-20
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  612 bits (1581), Expect = 0.0
 Identities = 236/866 (27%), Positives = 353/866 (40%), Gaps = 132/866 (15%)

Query: 18  TSSMLSPLCHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCLWDG 77
           +           E   L+ FK+ L                     W     N + C +DG
Sbjct: 1   SFQASPSQSLYREIHQLISFKDVLPD-------------KNLLPDWSS---NKNPCTFDG 44

Query: 78  VECNENTGHVIKLDLSNSCLQGFINS-SSGLFKLVHLEWLDLAFNYFICSEIPPEIINLS 136
           V C      V  +DLS+  L    ++ SS L  L  LE L L+ ++   +         +
Sbjct: 45  VTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHI--NGSVSGFKCSA 100

Query: 137 RLSYLNLSSAGFFGQIPS--EILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLK 194
            L+ L+LS     G + +   +   S L  L++S N+     ++      +   KL +L+
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV------SGGLKLNSLE 154

Query: 195 ELALGGVTISSPIPHSLA---NLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNL 251
            L L   +IS               L  L++SG ++ G +   +     L +LD+S NN 
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNF 212

Query: 252 LGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFT 311
              +P  +G+   L+ LDIS N+LSG+   +I     L+ L +S N+F G  P       
Sbjct: 213 STGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLK 269

Query: 312 RLYWLSLASNDFSGELPAS-FGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNN 370
            L +LSLA N F+GE+P    G   +L GLD+S   F   +P    + + L+ L  S NN
Sbjct: 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329

Query: 371 FSGPIDLDMFLVNFKHLEHLSLSSNRLS-LFTKAIFNTSQKFNFVGLRSCNLNEFPNFLK 429
           FSG + +D  L+  + L+ L LS N  S    +++ N S                     
Sbjct: 330 FSGELPMD-TLLKMRGLKVLDLSFNEFSGELPESLTNLSAS------------------- 369

Query: 430 NQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTL 489
               L  LDLS N   G +   L +        L L                        
Sbjct: 370 ----LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ----------------------- 402

Query: 490 DLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQC 549
                                   NN  TGKIP  + N S  L  L LS+N LSG +P  
Sbjct: 403 ------------------------NNGFTGKIPPTLSNCSE-LVSLHLSFNYLSGTIPSS 437

Query: 550 LDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLD 609
           L + S  L  L L  N   G IPQ  +  ++L  + L  N L G IP  L NC++L ++ 
Sbjct: 438 LGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496

Query: 610 LGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKL 669
           L NN+++G  P W+G L  L +L L +N   G I  P        L  +DL+ N F G +
Sbjct: 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNTNLFNGTI 554

Query: 670 PSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYS----LTMSNKGQMMSYD 725
           P+  F+    +     +  RY+           + A  + ++       ++        +
Sbjct: 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614

Query: 726 KVPNFLTGVI--------------LSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILS 771
                  G                +S N   G IP  I ++  L +L+L +N + G I  
Sbjct: 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674

Query: 772 CLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSF 831
            +G+L GL  LDLS+NK  G+IPQ +  LT L   ++SNNNL+GPIP+  QF TF    F
Sbjct: 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKF 734

Query: 832 NGNLGLCGKPLPKECENDEAPTNEDQ 857
             N GLCG PLP+   ++       Q
Sbjct: 735 LNNPGLCGYPLPRCDPSNADGYAHHQ 760

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  326 bits (837), Expect = e-100
 Identities = 140/717 (19%), Positives = 230/717 (32%), Gaps = 88/717 (12%)

Query: 137 RLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKEL 196
                + S      Q+P ++   +N+  L+L+HN    L  L   N        + L  L
Sbjct: 5   SHEVADCSHLKLT-QVPDDLP--TNITVLNLTHN---QLRRLPAANFTRY----SQLTSL 54

Query: 197 ALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELP 256
            +G  TIS   P     L  L +L+L   EL           T L  L L  N++     
Sbjct: 55  DVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 114

Query: 257 TSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNF--TRLY 314
                   L  LD+S N LS     +   L +L++L LS N+ +      +  F  + L 
Sbjct: 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174

Query: 315 WLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLR---NLAQLKFLEFSHNNF 371
            L L+SN      P  F  +  L GL ++  +    +   L        ++ L  S++  
Sbjct: 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234

Query: 372 SGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQ 431
           S   +     + + +L  L LS N L++                          +     
Sbjct: 235 STTSNTTFLGLKWTNLTMLDLSYNNLNVVG-----------------------NDSFAWL 271

Query: 432 HYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDL 491
             LE   L  N I       L    + N  YLNL  +F                     +
Sbjct: 272 PQLEYFFLEYNNIQHLFSHSLH--GLFNVRYLNLKRSFT-----------------KQSI 312

Query: 492 SYNYLQGPLPVP---PPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQ 548
           S   L              +H  + +N + G          N L+ L LS +  S L   
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN-LKYLSLSNSFTS-LRTL 370

Query: 549 CLDNFSD----HLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRS-LVNCS 603
             + F       L IL+L  NK        F     L ++DL  N +   +         
Sbjct: 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE 430

Query: 604 SLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNN 663
           ++  + L  N+      +    +  L  L+L+   L  +   P+       L I+DLSNN
Sbjct: 431 NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490

Query: 664 RFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMS 723
                +     +    +++++               L  +A  G   Y L   +      
Sbjct: 491 NIAN-INDDMLEGLEKLEILDLQHNNLAR-------LWKHANPGGPIYFLKGLSH----- 537

Query: 724 YDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLD 783
                  L  + L SN FD        +L  L+++ L  N+L+    S   N   L+SL+
Sbjct: 538 -------LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 590

Query: 784 LSNNKFSGQIPQQLVD-LTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLCG 839
           L  N  +    +        L   ++  N           F  +   +      L  
Sbjct: 591 LQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSS 647

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  281 bits (720), Expect = 4e-83
 Identities = 145/635 (22%), Positives = 225/635 (35%), Gaps = 71/635 (11%)

Query: 86  HVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEII-NLSRLSYLNLS 144
            +  LD+  + +           KL  L+ L+L  N    S++  +     + L+ L+L 
Sbjct: 50  QLTSLDVGFNTISKLEPEL--CQKLPMLKVLNLQHNEL--SQLSDKTFAFCTNLTELHLM 105

Query: 145 SAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTIS 204
           S        +  ++  NL++LDLSHN    L   K          L NL+EL L    I 
Sbjct: 106 SNSIQKIKNNPFVKQKNLITLDLSHN---GLSSTKLGTQVQ----LENLQELLLSNNKIQ 158

Query: 205 SPIPHSLA--NLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNL 262
           +     L     SSL  L LS  +++   P     + +L  L L+   L   L   +   
Sbjct: 159 ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE 218

Query: 263 DC---LKRLDISWNELSGELPASIGNLA--SLEQLELSLNRFRGKTPHSMGNFTRLYWLS 317
                ++ L +S ++LS     +   L   +L  L+LS N        S     +L +  
Sbjct: 219 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278

Query: 318 LASNDFSGELPASFGNLRSLEGLD---------ISECKFSSQIPSSLRNLAQLKFLEFSH 368
           L  N+       S   L ++  L+         IS          S + L  L+ L    
Sbjct: 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338

Query: 369 NNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNE----- 423
           N+  G I  +MF     +L++LSLS++  SL T     T        L   NL +     
Sbjct: 339 NDIPG-IKSNMF-TGLINLKYLSLSNSFTSLRTL-TNETFVSLAHSPLHILNLTKNKISK 395

Query: 424 -FPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPR 482
              +      +LEVLDL  N+I  ++        ++N   + LS+N  +        F  
Sbjct: 396 IESDAFSWLGHLEVLDLGLNEIGQELTGQEWR-GLENIFEIYLSYNKYLQL--TRNSFAL 452

Query: 483 NYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNL 542
                 L L    L+                        P       N L ILDLS NN+
Sbjct: 453 VPSLQRLMLRRVALKNV-------------------DSSPSPFQPLRN-LTILDLSNNNI 492

Query: 543 SGLLPQCLDNFSDHLSILDLQHNK--------FCGSIPQTFLSGRSLMMIDLSDNLLQGR 594
           + +    L+     L ILDLQHN           G           L +++L  N     
Sbjct: 493 ANINDDMLEGLE-KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI 551

Query: 595 IPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPE 654
                 +   LK +DLG N ++    S       L  L L+ N +  + ++   G  F  
Sbjct: 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK-VFGPAFRN 610

Query: 655 LRIIDLSNNRFTGKLPS-KYFQCWNAMQVVNTSEL 688
           L  +D+  N F     S  +F  W      N  EL
Sbjct: 611 LTELDMRFNPFDCTCESIAWFVNWINETHTNIPEL 645

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  202 bits (515), Expect = 5e-55
 Identities = 97/525 (18%), Positives = 167/525 (31%), Gaps = 69/525 (13%)

Query: 83  NTGHVIKLDLSNSCLQGFINSSSGLF-KLVHLEWLDLAFNYFICSEIPPEII---NLSRL 138
             G +  L L+N  L   +     L      +  L L+ +    S            + L
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL--STTSNTTFLGLKWTNL 250

Query: 139 SYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNL--VKKLT---NL 193
           + L+LS              L  L    L +N   N+  L   +L  L  V+ L    + 
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN---NIQHLFSHSLHGLFNVRYLNLKRSF 307

Query: 194 KELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLG 253
            + ++   ++      S   L  L  L++   ++ G   ++   L  L YL LS +    
Sbjct: 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367

Query: 254 ELPTSIG----NLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSM-G 308
              T+          L  L+++ N++S     +   L  LE L+L LN    +       
Sbjct: 368 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427

Query: 309 NFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSS--QIPSSLRNLAQLKFLEF 366
               ++ + L+ N +      SF  + SL+ L +      +    PS  + L  L  L+ 
Sbjct: 428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487

Query: 367 SHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPN 426
           S+NN +     D  L   + LE L L  N L+   K                        
Sbjct: 488 SNNNIANIN--DDMLEGLEKLEILDLQHNNLARLWKHANP---------------GGPIY 530

Query: 427 FLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDG 486
           FLK   +L +L+L  N       +      +     ++L  N L         F      
Sbjct: 531 FLKGLSHLHILNLESNGFDEIPVEVF--KDLFELKIIDLGLNNLNTL--PASVFNNQVSL 586

Query: 487 FTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLL 546
            +L+L                       N +T         +  +L  LD+ +N      
Sbjct: 587 KSLNL---------------------QKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625

Query: 547 PQCLD----NFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLS 587
                        H +I +L  +  C + P     G  + + D S
Sbjct: 626 ESIAWFVNWINETHTNIPELSSHYLCNTPPH--YHGFPVRLFDTS 668

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  122 bits (307), Expect = 1e-28
 Identities = 60/297 (20%), Positives = 103/297 (34%), Gaps = 39/297 (13%)

Query: 529 SNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSD 588
           + S E+ D S+  L+  +P   D+   ++++L+L HN+        F     L  +D+  
Sbjct: 3   TVSHEVADCSHLKLTQ-VP---DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF 58

Query: 589 NLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNT 648
           N +    P        LK L+L +N++S            L  L L SN +  +    N 
Sbjct: 59  NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK--NNP 116

Query: 649 GCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAAL-G 707
                 L  +DLS+N  +             +Q +                 +S   +  
Sbjct: 117 FVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELL----------------LSNNKIQA 159

Query: 708 IYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHG 767
           +    L +             + L  + LSSN+     P     +  L  L L N  L  
Sbjct: 160 LKSEELDIFA----------NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209

Query: 768 HILSCLG---NLTGLESLDLSNNKFSGQIPQQLVDLTF--LEFFNVSNNNLTGPIPQ 819
            +   L      T + +L LSN++ S       + L +  L   ++S NNL      
Sbjct: 210 SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND 266

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  268 bits (687), Expect = 3e-79
 Identities = 119/568 (20%), Positives = 202/568 (35%), Gaps = 36/568 (6%)

Query: 126 SEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGN 185
            +IP  +        L+LS                 L  LDLS      +  +++    +
Sbjct: 20  YKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC---EIQTIEDGAYQS 74

Query: 186 LVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLD 245
               L++L  L L G  I S    + + LSSL  L      L       +G+L  L  L+
Sbjct: 75  ----LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 246 LSFNNLLG-ELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLE----QLELSLNRFR 300
           ++ N +   +LP    NL  L+ LD+S N++       +  L  +      L+LSLN   
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 301 GKTPHSMGNFTRLYWLSLASNDFSGELPA-SFGNLRSLEGLDISECKFSSQ------IPS 353
                      RL+ L+L +N  S  +       L  LE   +   +F ++        S
Sbjct: 191 F-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249

Query: 354 SLRNLAQLKFLEFSHNNFSG-PIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFN 412
           +L  L  L   EF          D+        ++   SL S  +       +N   +  
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ-- 307

Query: 413 FVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIG 472
            + L +C   +FP        L+ L  + NK      +      + +  +L+LS N L  
Sbjct: 308 HLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGNAFSEV----DLPSLEFLDLSRNGLSF 361

Query: 473 FYQHPMFFPRNYDGFTLDLSYNYLQGPLP--VPPPQTKHYLVSNNSLTGKIPFWICNSSN 530
                           LDLS+N +       +   Q +H    +++L     F +  S  
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 531 SLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSG-RSLMMIDLSDN 589
           +L  LD+S+ +         +  S  L +L +  N F  +      +  R+L  +DLS  
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

Query: 590 LLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTG 649
            L+   P +  + SSL+ L++ +N            L  L VL    N +     +    
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK-KQELQ 539

Query: 650 CGFPELRIIDLSNNRFTGKLPSKYFQCW 677
                L  ++L+ N F      + F  W
Sbjct: 540 HFPSSLAFLNLTQNDFACTCEHQSFLQW 567

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  261 bits (670), Expect = 7e-77
 Identities = 118/637 (18%), Positives = 196/637 (30%), Gaps = 113/637 (17%)

Query: 191 TNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNN 250
            + K L L    +     +S  +   L +L LS CE++        +L+ L  L L+ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 251 LLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRG-KTPHSMGN 309
           +      +   L  L++L      L+      IG+L +L++L ++ N  +  K P    N
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 310 FTRLYWLSLASNDFSGELPASFGNLRSLE----GLDISECKFSSQIPSSLRNLAQLKFLE 365
            T L  L L+SN            L  +      LD+S    +   P + + + +L  L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLT 206

Query: 366 FSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFP 425
             +N  S  +           LE   L                 K    GL +  + EF 
Sbjct: 207 LRNNFDSLNVMKTCIQ-GLAGLEVHRLVLGEFRNEGN--LEKFDKSALEGLCNLTIEEF- 262

Query: 426 NFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYD 485
                   L  LD   + I        +   + N S  +L    +         F  N+ 
Sbjct: 263 -------RLAYLDYYLDDIID------LFNCLTNVSSFSLVSVTIERVKD----FSYNFG 305

Query: 486 GFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLS-- 543
              L+L          +     K    ++N            S   LE LDLS N LS  
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS---LEFLDLSRNGLSFK 362

Query: 544 GLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRS-LVNC 602
           G   Q     +  L  LDL  N    ++   FL    L  +D   + L+     S  ++ 
Sbjct: 363 GCCSQSDFGTT-SLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 603 SSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSN 662
            +L +LD+ +      F      L                            L ++ ++ 
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGL--------------------------SSLEVLKMAG 454

Query: 663 NRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMM 722
           N F        F     +  ++                                      
Sbjct: 455 NSFQENFLPDIFTELRNLTFLD-------------------------------------- 476

Query: 723 SYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESL 782
                        LS  + +   PT+  +L  LQVL++++N+           L  L+ L
Sbjct: 477 -------------LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 523

Query: 783 DLSNNKFSGQIPQQLVDL-TFLEFFNVSNNNLTGPIP 818
           D S N       Q+L    + L F N++ N+      
Sbjct: 524 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  241 bits (617), Expect = 2e-69
 Identities = 115/692 (16%), Positives = 211/692 (30%), Gaps = 138/692 (19%)

Query: 112 HLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNS 171
             + LDL+FN            +   L  L+LS              LS+L +L L+ N 
Sbjct: 29  STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 172 YYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRG-R 230
             +L              L++L++L      ++S     + +L +L  L+++   ++  +
Sbjct: 88  IQSLAL-------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 231 IPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLK----RLDISWNELSGELPASIGNL 286
           +P    NLT L +LDLS N +     T +  L  +      LD+S N ++   P +   +
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 287 ASLEQLELSLNRFRGK-TPHSMGNFTRLYWLSLASNDFSGEL------PASFGNLRSLEG 339
             L +L L  N          +     L    L   +F  E        ++   L +L  
Sbjct: 201 -RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 340 LDISECK---FSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNR 396
            +        +   I      L  +              D           +HL L + +
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS----YNFGWQHLELVNCK 315

Query: 397 LSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPS 456
              F      + ++  F   +  N     +       LE LDLS N +  K      +  
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL----PSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 457 MQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNS 516
             +  YL+LS N +I    + +   +      LD                       +++
Sbjct: 372 TTSLKYLDLSFNGVITMSSNFLGLEQLE---HLDFQ---------------------HSN 407

Query: 517 LTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFL 576
           L     F +  S  +L  LD+S+ +         +  S  L +L +  N F  +      
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIF 466

Query: 577 SG-RSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILK 635
           +  R+L  +DLS   L+   P +  + SSL+ L++ +N            L  L VL   
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL--- 523

Query: 636 SNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMI 695
                                  D S N        +     +++  +N           
Sbjct: 524 -----------------------DYSLNHIMTSKKQELQHFPSSLAFLN----------- 549

Query: 696 YPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTS--IANLK 753
                                                   L+ N F         +  +K
Sbjct: 550 ----------------------------------------LTQNDFACTCEHQSFLQWIK 569

Query: 754 GLQVLSLANNSLHGHILSCLGNLTGLESLDLS 785
             + L +    +     S    +  + SL+++
Sbjct: 570 DQRQLLVEVERMECATPSDKQGMP-VLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  232 bits (594), Expect = 3e-66
 Identities = 114/617 (18%), Positives = 175/617 (28%), Gaps = 132/617 (21%)

Query: 207 IPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLK 266
           IP +L    S   L LS   LR        +  +L  LDLS   +      +  +L  L 
Sbjct: 22  IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 267 RLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDF-SG 325
            L ++ N +      +   L+SL++L              +G+   L  L++A N   S 
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 326 ELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFK 385
           +LP  F NL +LE LD+S  K  S   + LR L Q+  L  S                  
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS------------------ 181

Query: 386 HLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIH 445
               L LS N ++      F   +                        L  L L  N   
Sbjct: 182 ----LDLSLNPMNFIQPGAFKEIR------------------------LHKLTLRNNFDS 213

Query: 446 GKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFT-LDLSYNYLQGPLPVPP 504
             V K  I+  +       L             F     +G   L +    L        
Sbjct: 214 LNVMKTCIQ-GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA------- 265

Query: 505 PQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQH 564
                     +     I       +N +    L    +  +      +++     L+L +
Sbjct: 266 --------YLDYYLDDIIDLFNCLTN-VSSFSLVSVTIERVKD---FSYNFGWQHLELVN 313

Query: 565 NKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQIS--GTFPSW 622
            KF         S + L                S V+  SL+FLDL  N +S  G     
Sbjct: 314 CKFGQFPTLKLKSLKRLTFTSNKGG-----NAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 623 LGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQV 682
                 L  L L  N +  M    +   G  +L  +D  ++          F     +  
Sbjct: 369 DFGTTSLKYLDLSFNGVITM---SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 683 VNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFD 742
           ++                                                   +S     
Sbjct: 426 LD---------------------------------------------------ISHTHTR 434

Query: 743 GEIPTSIANLKGLQVLSLANNSLHGHILSC-LGNLTGLESLDLSNNKFSGQIPQQLVDLT 801
                    L  L+VL +A NS   + L      L  L  LDLS  +     P     L+
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 802 FLEFFNVSNNNLTGPIP 818
            L+  N+S+NN      
Sbjct: 495 SLQVLNMSHNNFFSLDT 511

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  203 bits (519), Expect = 4e-56
 Identities = 109/576 (18%), Positives = 182/576 (31%), Gaps = 103/576 (17%)

Query: 83  NTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLN 142
               + KL    + L    N    +  L  L+ L++A N     ++P    NL+ L +L+
Sbjct: 98  GLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155

Query: 143 LSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVT 202
           LSS        +++  L  +  L+LS +   N +   +P       K   L +L L    
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF----KEIRLHKLTLRNNF 211

Query: 203 ISSPIP-HSLANLSSLTLLSLSGCELRGR------IPSLLGNLTKLMYLDLSFNNL---L 252
            S  +    +  L+ L +  L   E R          S L  L  L   +     L   L
Sbjct: 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271

Query: 253 GELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTR 312
            ++      L  +    +    +      S       + LEL   +F       + +  R
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQFPTLKLKSLKR 329

Query: 313 LYWLSLASNDFSGELPASFGNLRSLEGLDISECK--FSSQIPSSLRNLAQLKFLEFSHNN 370
           L + S    +       S  +L SLE LD+S     F      S      LK+L+ S N 
Sbjct: 330 LTFTSNKGGN-----AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 371 FSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKN 430
                 +    +  + LEHL    + L   ++                       +   +
Sbjct: 385 VIT---MSSNFLGLEQLEHLDFQHSNLKQMSE----------------------FSVFLS 419

Query: 431 QHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLD 490
              L  LD+S                    S L                         L 
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIF-----NGLSSLE-----------------------VLK 451

Query: 491 LSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCL 550
           ++ N  Q                        P       N L  LDLS   L  L P   
Sbjct: 452 MAGNSFQENFL--------------------PDIFTELRN-LTFLDLSQCQLEQLSPTAF 490

Query: 551 DNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNC-SSLKFLD 609
           ++ S  L +L++ HN F       +    SL ++D S N +     + L +  SSL FL+
Sbjct: 491 NSLS-SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 549

Query: 610 LGNNQISGTFPS--WLGTLRELNVLILKSNKLHGMI 643
           L  N  + T     +L  +++   L+++  ++    
Sbjct: 550 LTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECAT 585

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  196 bits (499), Expect = 2e-53
 Identities = 96/585 (16%), Positives = 171/585 (29%), Gaps = 119/585 (20%)

Query: 245 DLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTP 304
                N   ++P ++      K LD+S+N L      S  +   L+ L+LS    +    
Sbjct: 13  QCMELNFY-KIPDNLPFS--TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 305 HSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFL 364
            +  + + L  L L  N        +F  L SL+ L   E   +S     + +L  LK L
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 365 EFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEF 424
             +HN       L  +  N  +LEHL LSSN++                         + 
Sbjct: 130 NVAHNLIQS-FKLPEYFSNLTNLEHLDLSSNKIQSIYC-------------------TDL 169

Query: 425 PNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNY 484
               +       LDLS N ++   P             L L +NF               
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAF---KEIRLHKLTLRNNFD-------------- 212

Query: 485 DGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSG 544
                                            +  +          LE+  L       
Sbjct: 213 ---------------------------------SLNVMKTCIQGLAGLEVHRLVLGEFRN 239

Query: 545 L--LPQCLDNFSDHLSILDLQHNK------FCGSIPQTFLSGRSLMMIDLSDNLLQGRIP 596
              L +   +  + L  L ++  +      +   I   F    ++    L    ++    
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299

Query: 597 RSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELR 656
            S       + L+L N +        L +L+ L     K       +         P L 
Sbjct: 300 FS--YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV-------DLPSLE 350

Query: 657 IIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMS 716
            +DLS N  +       F+   +     T+ L+Y++        +S+  +     +    
Sbjct: 351 FLDLSRNGLS-------FKGCCSQSDFGTTSLKYLD--------LSFNGVITMSSNFLGL 395

Query: 717 NKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSI-ANLKGLQVLSLANNSLHGHILSCLGN 775
            +            L  +    +        S+  +L+ L  L +++             
Sbjct: 396 EQ------------LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443

Query: 776 LTGLESLDLSNNKFSGQI-PQQLVDLTFLEFFNVSNNNLTGPIPQ 819
           L+ LE L ++ N F     P    +L  L F ++S   L    P 
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  159 bits (404), Expect = 5e-41
 Identities = 80/382 (20%), Positives = 136/382 (35%), Gaps = 48/382 (12%)

Query: 90  LDLSNSCLQGFINSSSGLF-KLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGF 148
            +   + L  +++    LF  L ++    L        E   +        +L L +   
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI---ERVKDFSYNFGWQHLELVNCK- 315

Query: 149 FGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGG--VTISSP 206
           FGQ P+  L+L +L  L  + N   N     +         L +L+ L L    ++    
Sbjct: 316 FGQFPT--LKLKSLKRLTFTSNKGGNAFSEVD---------LPSLEFLDLSRNGLSFKGC 364

Query: 207 IPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSI-GNLDCL 265
              S    +SL  L LS   +   + S    L +L +LD   +NL      S+  +L  L
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423

Query: 266 KRLDISWNELSGELPASIGNLASLEQLELSLNRFRGK-TPHSMGNFTRLYWLSLASNDFS 324
             LDIS              L+SLE L+++ N F+    P        L +L L+     
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 325 GELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNF 384
              P +F +L SL+ L++S   F S      + L  L+ L++S N+              
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK-KQELQHFP 542

Query: 385 KHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKI 444
             L  L+L+ N  +                   +C    F  ++K+Q     L +   ++
Sbjct: 543 SSLAFLNLTQNDFA------------------CTCEHQSFLQWIKDQR---QLLVEVERM 581

Query: 445 HGKVPKWLIEPSMQNFSYLNLS 466
               P        Q    L+L+
Sbjct: 582 ECATP-----SDKQGMPVLSLN 598

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  139 bits (353), Expect = 1e-34
 Identities = 78/501 (15%), Positives = 131/501 (26%), Gaps = 128/501 (25%)

Query: 335 RSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSS 394
            S + LD+S          S  +  +L+ L+ S        D      +  HL  L L+ 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTG 85

Query: 395 NRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIE 454
           N +       F+                           L+ L      +       L  
Sbjct: 86  NPIQSLALGAFS-----------------------GLSSLQKLVAVETNLAS-----LEN 117

Query: 455 PSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSN 514
             + +   L                         L++++N +Q                 
Sbjct: 118 FPIGHLKTLK-----------------------ELNVAHNLIQS---------------- 138

Query: 515 NSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFS---DHLSILDLQHNKFCGSI 571
                K+P +  N +N LE LDLS N +  +    L            LDL  N      
Sbjct: 139 ----FKLPEYFSNLTN-LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193

Query: 572 PQTFLSGRSLMMIDLSDNLLQGRIPR-SLVNCSSLKFLDL------GNNQISGTFPSWLG 624
           P  F     L  + L +N     + +  +   + L+   L          +     S L 
Sbjct: 194 PGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252

Query: 625 TLRELNVLILKSNKLHGMIRE-PNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVV 683
            L  L +   +   L   + +  +       +    L +          Y   W      
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ----- 307

Query: 684 NTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPN--FLTGVILSSNRF 741
                                        L + N      + + P     +   L+    
Sbjct: 308 ----------------------------HLELVN----CKFGQFPTLKLKSLKRLTFTSN 335

Query: 742 DGEIPTSIANLKGLQVLSLANNSLH--GHILSCLGNLTGLESLDLSNNKFSGQIPQQLVD 799
            G    S  +L  L+ L L+ N L   G         T L+ LDLS N     +    + 
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLG 394

Query: 800 LTFLEFFNVSNNNLTGPIPQG 820
           L  LE  +  ++NL       
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFS 415

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  127 bits (322), Expect = 9e-31
 Identities = 62/339 (18%), Positives = 103/339 (30%), Gaps = 67/339 (19%)

Query: 508 KHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKF 567
             Y     +   KIP  +     S + LDLS+N L  L      +F   L +LDL   + 
Sbjct: 10  ITYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEI 64

Query: 568 CGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLR 627
                  + S   L  + L+ N +Q     +    SSL+ L      ++      +G L+
Sbjct: 65  QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124

Query: 628 ELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSE 687
            L  L +  N +    + P        L  +DLS+N+                       
Sbjct: 125 TLKELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSNKIQS-------------------- 163

Query: 688 LRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVI------------ 735
                  IY   L     + + + SL +S            N +  +             
Sbjct: 164 -------IYCTDLRVLHQMPLLNLSLDLSL-----------NPMNFIQPGAFKEIRLHKL 205

Query: 736 -LSSNRFDGEIP-TSIANLKGLQVLSLANNSLHGHILSC---LGNLTGLESLDLSNNKFS 790
            L +N     +  T I  L GL+V  L                  L GL +L +   + +
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 791 ------GQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQF 823
                   I      LT +  F++ +  +         F
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF 304

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  265 bits (679), Expect = 7e-78
 Identities = 97/644 (15%), Positives = 193/644 (29%), Gaps = 103/644 (15%)

Query: 58  PKTASWKPEEANIDCCLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLD 117
              A+W   +         GV  N + G V  L L      G +     + +L  LE L 
Sbjct: 55  QPGANWNFNKELDMWGAQPGVSLN-SNGRVTGLSLEGFGASGRV--PDAIGQLTELEVLA 111

Query: 118 LAFNYFICSE---IPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYN 174
           L  +    +E    P  I               +                 DL  +   +
Sbjct: 112 LGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDY---DPREDFSDLIKDCINS 168

Query: 175 LIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSL 234
             + K   +    +      ++      I+  +  ++  L+ L    +            
Sbjct: 169 DPQQKS--IKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICE 225

Query: 235 LGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLEL 294
                     +  +            NL  L  +++       +LP  +  L  ++ + +
Sbjct: 226 AWEN-----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280

Query: 295 SLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSS-QIPS 353
           + NR                 +S        +  A       ++ + I      +  + +
Sbjct: 281 ACNRG----------------ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324

Query: 354 SLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNF 413
           SL+ + +L  LE  +N   G +       +   L  L+L+ N+++         +++   
Sbjct: 325 SLQKMKKLGMLECLYNQLEGKLPA---FGSEIKLASLNLAYNQITEIPANFCGFTEQVEN 381

Query: 414 VGLRSCNLNEFPN--FLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLI 471
           +      L   PN    K+   +  +D S N+I     K         F  +N+S     
Sbjct: 382 LSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS----- 436

Query: 472 GFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNS 531
                           +++LS                     NN ++          S  
Sbjct: 437 ----------------SINLS---------------------NNQISKFPKELFSTGSP- 458

Query: 532 LEILDLSYNNLSGLLPQCLDNFSD------HLSILDLQHNKFCGSIPQTFLSG--RSLMM 583
           L  ++L  N L+ +    L + ++       L+ +DL+ NK    +   F +     L+ 
Sbjct: 459 LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL-TKLSDDFRATTLPYLVG 517

Query: 584 IDLSDNLLQGRIPRSLVNCSSLKFLDLGN------NQISGTFPSWLGTLRELNVLILKSN 637
           IDLS N      P   +N S+LK   + N      N+    +P  +     L  L + SN
Sbjct: 518 IDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576

Query: 638 KLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQ 681
            +  +  +       P + ++D+ +N       S       A  
Sbjct: 577 DIRKVNEKI-----TPNISVLDIKDNPNISIDLSYVCPYIEAGM 615

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  256 bits (657), Expect = 8e-75
 Identities = 92/699 (13%), Positives = 188/699 (26%), Gaps = 171/699 (24%)

Query: 134 NLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNL 193
           +  R++ L+L   G  G++P  I +L+ L  L L  +        +       +    + 
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSH---GEKVNERLFGPKGISANMSD 135

Query: 194 KELALGGVTISSPIPHSLA--NLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNL 251
           ++     +             + S L    ++    +  I        K   +    NN+
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 252 LGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFT 311
              +  ++  L  L++  +  +    E         + E  +               N  
Sbjct: 196 -TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-----EDLKWDNLK 249

Query: 312 RLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSS--QIPSSLRNLAQLKFLEFSHN 369
            L  + + +     +LP     L  ++ ++++  +  S  Q+    + LA          
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADA-------- 301

Query: 370 NFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLK 429
                          + ++ + +  N L  F                           L+
Sbjct: 302 ------------PVGEKIQIIYIGYNNLKTFPV----------------------ETSLQ 327

Query: 430 NQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTL 489
               L +L+   N++ G        P+  +   L                        +L
Sbjct: 328 KMKKLGMLECLYNQLEG------KLPAFGSEIKLA-----------------------SL 358

Query: 490 DLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQC 549
           +L+YN +                        IP   C  +  +E L  ++N L  +    
Sbjct: 359 NLAYNQITE----------------------IPANFCGFTEQVENLSFAHNKLKYIPNIF 396

Query: 550 LDNFSDHLSILDLQHNKF-------CGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNC 602
                  +S +D  +N+           +  T   G ++  I+LS+N +           
Sbjct: 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456

Query: 603 SSLKFLDLGNNQISG-------TFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPEL 655
           S L  ++L  N ++                   L  + L+ NKL  +  +       P L
Sbjct: 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDF-RATTLPYL 515

Query: 656 RIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTM 715
             IDLS N F+   P++             S L+                          
Sbjct: 516 VGIDLSYNSFSK-FPTQPLNS---------STLKGF------------------------ 541

Query: 716 SNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGN 775
                                  NR   E P  I     L  L + +N +         N
Sbjct: 542 -------------GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPN 588

Query: 776 LTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLT 814
           +     LD+ +N         +        + +  +   
Sbjct: 589 I---SVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  211 bits (539), Expect = 2e-58
 Identities = 91/622 (14%), Positives = 177/622 (28%), Gaps = 133/622 (21%)

Query: 210 SLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLG----ELPTSIGNLDCL 265
           SL +   +T LSL G    GR+P  +G LT+L  L L  +          P  I      
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 266 KRLDISWNELSGELPASIGNLA--SLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDF 323
           ++                       L +  ++ +  +     S     +   +   SN+ 
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 324 SGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVN 383
           +  +  +   L  L    +    F ++                 +       DL     N
Sbjct: 196 TF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLK--WDN 247

Query: 384 FKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNK 443
            K L  + + +                          L + P FLK    +++++++CN+
Sbjct: 248 LKDLTDVEVYNCPN-----------------------LTKLPTFLKALPEMQLINVACNR 284

Query: 444 IHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVP 503
                    ++   Q  +   +                       + + YN L+      
Sbjct: 285 GISGEQ---LKDDWQALADAPVGEKIQ-----------------IIYIGYNNLK------ 318

Query: 504 PPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQ 563
                         T  +   +      L +L+  YN L G LP    +    L+ L+L 
Sbjct: 319 --------------TFPVETSLQKMKK-LGMLECLYNQLEGKLP-AFGSEI-KLASLNLA 361

Query: 564 HNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLV--NCSSLKFLDLGNNQISGTFPS 621
           +N+              +  +  + N L+  IP      + S +  +D   N+I      
Sbjct: 362 YNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420

Query: 622 WLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQ 681
               L                     T      +  I+LSNN+ +   P + F   + + 
Sbjct: 421 NFDPL-------------------DPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLS 460

Query: 682 VVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRF 741
            +N               L       + D +    N             LT + L  N+ 
Sbjct: 461 SINLMGNM----------LTEIPKNSLKDENENFKNTYL----------LTSIDLRFNKL 500

Query: 742 DGEIPTSIA--NLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSN------NKFSGQI 793
              +        L  L  + L+ NS      +   N + L+   + N      N+   + 
Sbjct: 501 TK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558

Query: 794 PQQLVDLTFLEFFNVSNNNLTG 815
           P+ +     L    + +N++  
Sbjct: 559 PEGITLCPSLTQLQIGSNDIRK 580

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  192 bits (489), Expect = 6e-52
 Identities = 62/496 (12%), Positives = 157/496 (31%), Gaps = 99/496 (19%)

Query: 89  KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSE------------------IPP 130
           ++   ++ +      S  + +L  L    +  + F+                        
Sbjct: 187 QIGQLSNNITFV---SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL 243

Query: 131 EIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNL--VK 188
           +  NL  L+ + + +     ++P+ +  L  +  ++++ N   +  +LK+ +   L    
Sbjct: 244 KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD-DWQALADAP 302

Query: 189 KLTNLKELALGGVTISS-PIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLS 247
               ++ + +G   + + P+  SL  +  L +L     +L G++P+  G+  KL  L+L+
Sbjct: 303 VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF-GSEIKLASLNLA 361

Query: 248 FNNLLGELPTSIGNLDCLKRLDISWNELSGELPA--SIGNLASLEQLELSLNRFRGKT-- 303
           +N +        G  + ++ L  + N+L   +P      +++ +  ++ S N        
Sbjct: 362 YNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420

Query: 304 -----PHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSS-------QI 351
                  +      +  ++L++N  S      F     L  +++     +          
Sbjct: 421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480

Query: 352 PSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKF 411
             + +N   L  ++   N  +  +  D       +L  + LS N  S F     N+S   
Sbjct: 481 NENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSST-- 537

Query: 412 NFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLI 471
               L+   +                D   N+   + P+ +      + + L +  N + 
Sbjct: 538 ----LKGFGI------------RNQRDAQGNRTLREWPEGIT--LCPSLTQLQIGSNDIR 579

Query: 472 GFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYL----VSNNSLTGKIPFWICN 527
                                             +    +    + +N        ++C 
Sbjct: 580 KV------------------------------NEKITPNISVLDIKDNPNISIDLSYVCP 609

Query: 528 SSNSLEILDLSYNNLS 543
                 +  L Y+   
Sbjct: 610 YIE-AGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  191 bits (486), Expect = 2e-51
 Identities = 71/533 (13%), Positives = 152/533 (28%), Gaps = 107/533 (20%)

Query: 295 SLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDIS----ECKFSSQ 350
            L+ +  +   S+ +  R+  LSL     SG +P + G L  LE L +     +      
Sbjct: 65  ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124

Query: 351 IPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQK 410
            P  +      +  +    ++           +F  L    ++S+      K     + K
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK 184

Query: 411 FNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFL 470
              +G  S N+      +     L    +  +    +      E   +N  Y        
Sbjct: 185 DTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWE--NENSEYAQQYKT-- 240

Query: 471 IGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSN 530
                              DL ++ L+              V N     K+P ++     
Sbjct: 241 ------------------EDLKWDNLK--------DLTDVEVYNCPNLTKLPTFLKALPE 274

Query: 531 SLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDN- 589
            +++++++ N          D                          G  + +I +  N 
Sbjct: 275 -MQLINVACNRGISGEQLKDD-----------------WQALADAPVGEKIQIIYIGYNN 316

Query: 590 LLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTG 649
           L    +  SL     L  L+   NQ+ G  P+  G+  +L  L L  N++  +    N  
Sbjct: 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIP--ANFC 373

Query: 650 CGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIY 709
               ++  +  ++N+    +P+ +          + S +                     
Sbjct: 374 GFTEQVENLSFAHNKLKY-IPNIFDAK-------SVSVMSA------------------- 406

Query: 710 DYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHI 769
              +  S            N +  V     +    +  +      +  ++L+NN +    
Sbjct: 407 ---IDFSY-----------NEIGSV---DGKNFDPLDPTPFKGINVSSINLSNNQISKFP 449

Query: 770 LSCLGNLTGLESLDLSNNKFSG-------QIPQQLVDLTFLEFFNVSNNNLTG 815
                  + L S++L  N  +           +   +   L   ++  N LT 
Sbjct: 450 KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  151 bits (384), Expect = 2e-38
 Identities = 49/533 (9%), Positives = 131/533 (24%), Gaps = 153/533 (28%)

Query: 315 WLSLASNDFSGELP-ASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSG 373
           W      D  G  P  S  +   + GL +     S ++P ++  L +L+ L    +    
Sbjct: 60  WNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKV 119

Query: 374 PIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHY 433
                                                              P  +     
Sbjct: 120 NE---------------------------------------------RLFGPKGISANMS 134

Query: 434 LEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSY 493
            E               +       +     ++ +      +             + L  
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK---------KSSRITLKD 185

Query: 494 NYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNF 553
             +                 +N++T  +   +   +  L    +  +             
Sbjct: 186 TQI--------------GQLSNNITF-VSKAVMRLTK-LRQFYMGNSPFVAENICEA--- 226

Query: 554 SDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNN 613
                  + ++ +   +    + + + L  +++ +     ++P  L     ++ +++  N
Sbjct: 227 ---WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283

Query: 614 QI--------SGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRF 665
           +              +      ++ ++ +  N L        +     +L +++   N+ 
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT-FPVETSLQKMKKLGMLECLYNQL 342

Query: 666 TGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYD 725
            GKLP+            +  +L                        L ++         
Sbjct: 343 EGKLPA----------FGSEIKLAS----------------------LNLAY-------- 362

Query: 726 KVPNFLTGVI--------------LSSNRFDGEIP--TSIANLKGLQVLSLANNSLHG-- 767
              N +T +                + N+    IP      ++  +  +  + N +    
Sbjct: 363 ---NQITEIPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVD 418

Query: 768 -----HILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTG 815
                 +         + S++LSNN+ S    +     + L   N+  N LT 
Sbjct: 419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  125 bits (317), Expect = 4e-30
 Identities = 52/454 (11%), Positives = 117/454 (25%), Gaps = 105/454 (23%)

Query: 383 NFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCN 442
           +   +  LSL     S                          P+ +     LEVL L  +
Sbjct: 79  SNGRVTGLSLEGFGAS-----------------------GRVPDAIGQLTELEVLALGSH 115

Query: 443 KIHGKVPKWLIE--PSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPL 500
                   +  +   +  +                   F   +      DL  + +    
Sbjct: 116 GEKVNERLFGPKGISANMSDEQKQKMRMHYQK-----TFVDYDPREDFSDLIKDCI---- 166

Query: 501 PVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSIL 560
                       +++     I      +    + +    NN++ +  + +   +  L   
Sbjct: 167 ------------NSDPQQKSIKKSSRITLKDTQ-IGQLSNNITFV-SKAVMRLT-KLRQF 211

Query: 561 DLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFP 620
            + ++ F                 +               N   L  +++ N       P
Sbjct: 212 YMGNSPFVAENICEAWE-----NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP 266

Query: 621 SWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAM 680
           ++L  L E+ ++                          +++ NR                
Sbjct: 267 TFLKALPEMQLI--------------------------NVACNRGIS-GEQLKDDWQALA 299

Query: 681 QVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNR 740
                 +++                + I   +L        +   K+   L  +    N+
Sbjct: 300 DAPVGEKIQI---------------IYIGYNNLKTFPVETSLQ--KMKK-LGMLECLYNQ 341

Query: 741 FDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQ--QLV 798
            +G++P +  +   L  L+LA N +     +  G    +E+L  ++NK    IP      
Sbjct: 342 LEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAK 399

Query: 799 DLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFN 832
            ++ +   + S N +         F   D T F 
Sbjct: 400 SVSVMSAIDFSYNEIGSVDG--KNFDPLDPTPFK 431

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  122 bits (309), Expect = 5e-29
 Identities = 41/252 (16%), Positives = 77/252 (30%), Gaps = 18/252 (7%)

Query: 83  NTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYF------ICSEIPPEIINLS 136
            T  V  L  +++ L+  I +      +  +  +D ++N            + P      
Sbjct: 375 FTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433

Query: 137 RLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKEL 196
            +S +NLS+              S L S++L  N    + +    +     K    L  +
Sbjct: 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSI 493

Query: 197 ALGGVTISS-PIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYL------DLSFN 249
            L    ++          L  L  + LS        P+   N + L         D   N
Sbjct: 494 DLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGN 552

Query: 250 NLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGN 309
             L E P  I     L +L I  N++   +   I    ++  L++  N         +  
Sbjct: 553 RTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCP 609

Query: 310 FTRLYWLSLASN 321
           +       L  +
Sbjct: 610 YIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  105 bits (265), Expect = 1e-23
 Identities = 37/309 (11%), Positives = 78/309 (25%), Gaps = 64/309 (20%)

Query: 519 GKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSG 578
           G  P    NS+  +  L L     SG +P  +   +  L +L L  +    +        
Sbjct: 70  GAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLT-ELEVLALGSHGEKVNERLF---- 124

Query: 579 RSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNK 638
                            P+ +    S +           TF  +       +++    N 
Sbjct: 125 ----------------GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINS 168

Query: 639 LHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPF 698
                    +     +   I   +N  T  +     +          ++LR         
Sbjct: 169 DPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRL---------TKLRQ-------- 210

Query: 699 ALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVL 758
                    + +      N         +            +          NLK L  +
Sbjct: 211 -------FYMGNSPFVAEN---------ICEAWENENSEYAQQYKTEDLKWDNLKDLTDV 254

Query: 759 SLANNSLHGHILSCLGNLTGLESLDLSNNKF--------SGQIPQQLVDLTFLEFFNVSN 810
            + N      + + L  L  ++ ++++ N+           Q          ++   +  
Sbjct: 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314

Query: 811 NNL-TGPIP 818
           NNL T P+ 
Sbjct: 315 NNLKTFPVE 323

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.0 bits (138), Expect = 2e-08
 Identities = 15/105 (14%), Positives = 30/105 (28%), Gaps = 4/105 (3%)

Query: 737 SSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQ---- 792
             + +  +   S+ +   +  LSL      G +   +G LT LE L L ++         
Sbjct: 65  ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124

Query: 793 IPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGL 837
            P+ +      E       +        +    F     +     
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSD 169

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  263 bits (674), Expect = 3e-75
 Identities = 106/650 (16%), Positives = 205/650 (31%), Gaps = 72/650 (11%)

Query: 30  ERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCLWDGVECNE--NTGHV 87
           +  AL    E+L   +    Y         + +W     N +  +W      +  N G V
Sbjct: 270 DYKALKAIWEALDG-KNWRYYSGTINNTIHSLNWNF---NKELDMWGDQPGVDLDNNGRV 325

Query: 88  IKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAG 147
             L L+    +G +  +  + +L  L+ L    +    S        L+           
Sbjct: 326 TGLSLAGFGAKGRVPDA--IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 148 FFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVT-ISSP 206
                   +     L   DL  ++     E+K     + +    +LK+  +G +T   + 
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI----SLKDTQIGNLTNRITF 439

Query: 207 IPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLK 266
           I  ++  L+ L ++  +         ++          +  +         S  NL  L 
Sbjct: 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWED-----ANSDYAKQYENEELSWSNLKDLT 494

Query: 267 RLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGE 326
            +++       +LP  + +L  L+ L ++ NR          ++TR              
Sbjct: 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS-AAQLKADWTR-------------- 539

Query: 327 LPASFGNLRSLEGLDISECKFSS-QIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFK 385
           L         ++   +           +SL+ + +L  L+  HN                
Sbjct: 540 LADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA----FGTNV 595

Query: 386 HLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPN--FLKNQHYLEVLDLSCNK 443
            L  L L  N++    +     + +   +G     L   PN    K+ + +  +D S NK
Sbjct: 596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK 655

Query: 444 IHGKVPKWLIEPSMQNF---SYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPL 500
           I  +                S + LS+N +  F      F       T+ LS N +   +
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKF--PTELFATGSPISTIILSNNLMTS-I 712

Query: 501 PVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSIL 560
           P              +          N+   L  +DL +N L+ L          +LS +
Sbjct: 713 P-------------ENSLKPKDGNYKNTYL-LTTIDLRFNKLTSLSDDFRATTLPYLSNM 758

Query: 561 DLQHNKFCGSIPQTFLSGRSLMMIDLSDNL------LQGRIPRSLVNCSSLKFLDLGNNQ 614
           D+ +N F  S P   L+   L    +          +  + P  +  C SL  L +G+N 
Sbjct: 759 DVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817

Query: 615 ISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNR 664
           I          L  L+   +  N    +  +  + C + E  +  L  ++
Sbjct: 818 IRKVDEKLTPQLYILD---IADNPNISI--DVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  228 bits (582), Expect = 7e-63
 Identities = 97/702 (13%), Positives = 185/702 (26%), Gaps = 162/702 (23%)

Query: 124 ICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNL 183
              +   ++ N  R++ L+L+  G  G++P  I +L+ L  L    +S      L     
Sbjct: 311 WGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEE 370

Query: 184 GNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMY 243
                       + +    +       L     L        E++        +L     
Sbjct: 371 LTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQI 430

Query: 244 LDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKT 303
            +L   N +  +  +I  L  L+ +  + +  + +  A        E       +     
Sbjct: 431 GNL--TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAV-----DWEDANSDYAKQYENE 483

Query: 304 PHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKF 363
             S  N   L  + L +     +LP    +L  L+ L+I+  +  S       +  +L  
Sbjct: 484 ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS-AAQLKADWTRLA- 541

Query: 364 LEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNE 423
                                  ++   +  N L  F                       
Sbjct: 542 ---------------DDEDTGPKIQIFYMGYNNLEEFPA--------------------- 565

Query: 424 FPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRN 483
               L+    L +LD   NK+           +      L                    
Sbjct: 566 -SASLQKMVKLGLLDCVHNKVR-------HLEAFGTNVKLT------------------- 598

Query: 484 YDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLS 543
                L L YN ++                       IP   C  ++ +E L  S+N L 
Sbjct: 599 ----DLKLDYNQIEE----------------------IPEDFCAFTDQVEGLGFSHNKLK 632

Query: 544 GLLPQCLDNFSDHLSILDLQHNKFCGSIPQTF-----LSGRSLMMIDLSDNLLQGRIPRS 598
            +           +  +D  +NK                G +   + LS N +Q      
Sbjct: 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL 692

Query: 599 LVNCSSLKFLDLGNNQIS-------GTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCG 651
               S +  + L NN ++                   L  + L+ NKL   + +      
Sbjct: 693 FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATT 751

Query: 652 FPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDY 711
            P L  +D+S N F+   P++     + ++       R                      
Sbjct: 752 LPYLSNMDVSYNCFSS-FPTQPLNS-SQLKAFGIRHQR---------------------- 787

Query: 712 SLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILS 771
                                      NR   + PT I     L  L + +N +   +  
Sbjct: 788 -----------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDE 823

Query: 772 CLGNLTGLESLDLSNNKF-SGQIPQQLVDLTFLEFFNVSNNN 812
            L     L  LD+++N   S  +      +    +  + +  
Sbjct: 824 KL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  168 bits (426), Expect = 5e-43
 Identities = 73/570 (12%), Positives = 154/570 (27%), Gaps = 106/570 (18%)

Query: 268 LDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGEL 327
           + I   E +  +       A  E L+    R+   T ++  +     W      D  G+ 
Sbjct: 257 VPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLN--WNFNKELDMWGDQ 314

Query: 328 PA-SFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKH 386
           P     N   + GL ++      ++P ++  L +LK L F  ++ +    L         
Sbjct: 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPD 374

Query: 387 LEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHG 446
           +        R+                             FL     L + DL  + I+ 
Sbjct: 375 MSEERKHRIRMHYK------------------------KMFLDYDQRLNLSDLLQDAINR 410

Query: 447 KVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFT----LDLSYNYLQGPLPV 502
                 I+      S ++L    +        F  +     T    +  + +        
Sbjct: 411 NPEMKPIKKD----SRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNI- 465

Query: 503 PPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDL 562
                +                  N  + L  ++L        LP  L +    L  L++
Sbjct: 466 -AVDWEDANSDYAKQYENEELSWSNLKD-LTDVELYNCPNMTQLPDFLYDLP-ELQSLNI 522

Query: 563 QHNKF---------CGSIPQTFLSGRSLMMIDLSDNLLQG-RIPRSLVNCSSLKFLDLGN 612
             N+             +     +G  + +  +  N L+      SL     L  LD  +
Sbjct: 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH 582

Query: 613 NQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSK 672
           N++     +  GT  +L  L L  N++  +    +      ++  +  S+N+    +P+ 
Sbjct: 583 NKVR-HLEA-FGTNVKLTDLKLDYNQIEEIP--EDFCAFTDQVEGLGFSHNKLKY-IPNI 637

Query: 673 YFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLT 732
           +          +   +                       S+  S            N + 
Sbjct: 638 FNAK-------SVYVMG----------------------SVDFSY-----------NKIG 657

Query: 733 GVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFS-- 790
                    +               ++L+ N +           + + ++ LSNN  +  
Sbjct: 658 SEGR-----NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI 712

Query: 791 -----GQIPQQLVDLTFLEFFNVSNNNLTG 815
                        +   L   ++  N LT 
Sbjct: 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  129 bits (327), Expect = 6e-31
 Identities = 53/418 (12%), Positives = 113/418 (27%), Gaps = 71/418 (16%)

Query: 427 FLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDG 486
            L N   +  L L+     G+VP  + +  +     L+   +         +F       
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQ--LTELKVLSFGTHSETVS--GRLFGDEELTP 373

Query: 487 FTLDLSYNYLQGPLP----VPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNL 542
              +   + ++            +     +  +++            + + + D    NL
Sbjct: 374 DMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL 433

Query: 543 SGLL---PQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSL 599
           +  +    + +   +  L I+   ++ F                 +            S 
Sbjct: 434 TNRITFISKAIQRLT-KLQIIYFANSPFTYDNIAVDWE-----DANSDYAKQYENEELSW 487

Query: 600 VNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIRE-------PNTGCGF 652
            N   L  ++L N       P +L  L EL  L +  N+     +         +     
Sbjct: 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG 547

Query: 653 PELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYS 712
           P+++I  +  N       S   Q           +L                 L      
Sbjct: 548 PKIQIFYMGYNNLEEFPASASLQ--------KMVKLGL---------------LDCVHNK 584

Query: 713 LTMSNKGQMMSYDKVPNF-----LTGVILSSNRFDGEIPTSI-ANLKGLQVLSLANNSLH 766
           +             +  F     LT + L  N+ + EIP    A    ++ L  ++N L 
Sbjct: 585 VR-----------HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK 632

Query: 767 G-HILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTF-----LEFFNVSNNNLTGPIP 818
               +    ++  + S+D S NK   +       +            +S N +     
Sbjct: 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT 690

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  108 bits (271), Expect = 3e-24
 Identities = 38/314 (12%), Positives = 89/314 (28%), Gaps = 53/314 (16%)

Query: 519 GKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSG 578
           G  P    +++  +  L L+     G +P  +   +  L +L    +    S        
Sbjct: 312 GDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLT-ELKVLSFGTHSETVSGRLFGDEE 370

Query: 579 RSLMMIDLSDNLLQGRIPR-SLVNCSSLKFLDLGNNQIS-----GTFPSWLGTLRELNVL 632
            +  M +   + ++    +  L     L   DL  + I+                +   +
Sbjct: 371 LTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQI 430

Query: 633 ILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYME 692
              +N++  +           +L+II  +N+ FT    +  ++  N+             
Sbjct: 431 GNLTNRITFI---SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE---- 483

Query: 693 GMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANL 752
                 +  +            + +             LT V L +     ++P  + +L
Sbjct: 484 ----ELSWSN------------LKD-------------LTDVELYNCPNMTQLPDFLYDL 514

Query: 753 KGLQVLSLANNSLHG---------HILSCLGNLTGLESLDLSNNKFSG-QIPQQLVDLTF 802
             LQ L++A N              +         ++   +  N          L  +  
Sbjct: 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVK 574

Query: 803 LEFFNVSNNNLTGP 816
           L   +  +N +   
Sbjct: 575 LGLLDCVHNKVRHL 588

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 92.2 bits (229), Expect = 3e-19
 Identities = 42/329 (12%), Positives = 90/329 (27%), Gaps = 50/329 (15%)

Query: 527 NSSNSLEILDLSYNNLSGLLP--QCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMI 584
           N       + +     +  +   + L         LD ++ ++        +   +    
Sbjct: 249 NKLTKDANVPIQLKETAEYIKDYKALKAI---WEALDGKNWRYYSGTINNTIHSLNWNF- 304

Query: 585 DLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIR 644
           +   ++   +    L N   +  L L      G  P  +G L EL VL   ++      R
Sbjct: 305 NKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGR 364

Query: 645 EPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYA 704
                   P++   +   +R        +      + + +  +                 
Sbjct: 365 LFGDEELTPDM--SEERKHRIRMHYKKMFLDYDQRLNLSDLLQD---------------- 406

Query: 705 ALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNS 764
                  ++  + + + +  D   +     I +       I  +I  L  LQ++  AN+ 
Sbjct: 407 -------AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP 459

Query: 765 LHG-------------------HILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEF 805
                                 +      NL  L  ++L N     Q+P  L DL  L+ 
Sbjct: 460 FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519

Query: 806 FNVSNNNLTGPIPQGNQFPTFDKTSFNGN 834
            N++ N           +         G 
Sbjct: 520 LNIACNRGISAAQLKADWTRLADDEDTGP 548

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  230 bits (589), Expect = 9e-69
 Identities = 93/351 (26%), Positives = 150/351 (42%), Gaps = 55/351 (15%)

Query: 25  LCHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCC--LWDGVECNE 82
           LC+  ++ ALLQ K+ L            +P     +SW P     DCC   W GV C+ 
Sbjct: 2   LCNPQDKQALLQIKKDLG-----------NP--TTLSSWLP---TTDCCNRTWLGVLCDT 45

Query: 83  --NTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSY 140
              T  V  LDLS   L       S L  L +L +L +     +   IPP I  L++L Y
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 141 LNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGG 200
           L ++     G IP  + ++  LV+LD S+N+                             
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNA----------------------------- 136

Query: 201 VTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLM-YLDLSFNNLLGELPTSI 259
             +S  +P S+++L +L  ++  G  + G IP   G+ +KL   + +S N L G++P + 
Sbjct: 137 --LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194

Query: 260 GNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLA 319
            NL+ L  +D+S N L G+     G+  + +++ L+ N         +G    L  L L 
Sbjct: 195 ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLR 252

Query: 320 SNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNN 370
           +N   G LP     L+ L  L++S      +IP    NL +     +++N 
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  210 bits (537), Expect = 1e-61
 Identities = 89/331 (26%), Positives = 125/331 (37%), Gaps = 61/331 (18%)

Query: 529 SNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGS--IPQTFLSGRSLMMIDL 586
           S+ L   D       G+L       +  ++ LDL          IP +  +   L  + +
Sbjct: 25  SSWLPTTDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI 83

Query: 587 SD-NLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIRE 645
              N L G IP ++   + L +L + +  +SG  P +L  ++ L  L    N L G +  
Sbjct: 84  GGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL-- 141

Query: 646 PNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAA 705
           P +    P L  I    NR +G +P  Y                                
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT------------------------ 177

Query: 706 LGIYDYSLTMSNKGQMMSYDKVPNFLTGVI-------------LSSNRFDGEIPTSIANL 752
                 S+T+S            N LTG I             LS N  +G+      + 
Sbjct: 178 ------SMTISR-----------NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD 220

Query: 753 KGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNN 812
           K  Q + LA NSL   +   +G    L  LDL NN+  G +PQ L  L FL   NVS NN
Sbjct: 221 KNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 813 LTGPIPQGNQFPTFDKTSFNGNLGLCGKPLP 843
           L G IPQG     FD +++  N  LCG PLP
Sbjct: 280 LCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  194 bits (496), Expect = 8e-56
 Identities = 70/272 (25%), Positives = 120/272 (44%), Gaps = 22/272 (8%)

Query: 207 IPHSLANLSSLTLLSLSGCELRGR--IPSLLGNLTKLMYLDLS-FNNLLGELPTSIGNLD 263
           +  +      +  L LSG  L     IPS L NL  L +L +   NNL+G +P +I  L 
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 264 CLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDF 323
            L  L I+   +SG +P  +  + +L  L+ S N   G  P S+ +   L  ++   N  
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 324 SGELPASFGNLRSL-EGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLV 382
           SG +P S+G+   L   + IS  + + +IP +  NL  L F++ S N   G     +   
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDA--SVLFG 218

Query: 383 NFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLN------EFPNFLKNQHYLEV 436
           + K+ + + L+ N L+      F+  +      L   +L         P  L    +L  
Sbjct: 219 SDKNTQKIHLAKNSLA------FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272

Query: 437 LDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHN 468
           L++S N + G++P+     ++Q F     ++N
Sbjct: 273 LNVSFNNLCGEIPQ---GGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  175 bits (447), Expect = 4e-49
 Identities = 82/377 (21%), Positives = 121/377 (32%), Gaps = 96/377 (25%)

Query: 207 IPHSLANLSSL----TLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGE--LPTSIG 260
           I   L N ++L               G +        ++  LDLS  NL     +P+S+ 
Sbjct: 14  IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA 73

Query: 261 NLDCLKRLDIS-WNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLA 319
           NL  L  L I   N L G +P +I  L  L  L ++     G  P  +     L  L  +
Sbjct: 74  NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133

Query: 320 SNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQL-KFLEFSHNNFSG--PID 376
            N  SG LP S  +L +L G+     + S  IP S  + ++L   +  S N  +G  P  
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193

Query: 377 LDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEV 436
                                                      NLN           L  
Sbjct: 194 F-----------------------------------------ANLN-----------LAF 201

Query: 437 LDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYL 496
           +DLS N + G         S +N   ++L+ N                           L
Sbjct: 202 VDLSRNMLEGDASVLF--GSDKNTQKIHLAKNS--------------------------L 233

Query: 497 QGPLP--VPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFS 554
              L             + NN + G +P  +      L  L++S+NNL G +PQ   N  
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF-LHSLNVSFNNLCGEIPQ-GGNLQ 291

Query: 555 DHLSILDLQHNKF-CGS 570
               +    +NK  CGS
Sbjct: 292 -RFDVSAYANNKCLCGS 307

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  168 bits (427), Expect = 2e-46
 Identities = 84/401 (20%), Positives = 129/401 (32%), Gaps = 109/401 (27%)

Query: 278 ELPASIGNLASL----EQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGN 333
           ++   +GN  +L       +     + G    +     R+  L L+  +     P     
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP----- 67

Query: 334 LRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSH-NNFSGPIDLDMFLVNFKHLEHLSL 392
                            IPSSL NL  L FL     NN  GPI     +     L +L +
Sbjct: 68  -----------------IPSSLANLPYLNFLYIGGINNLVGPIPPA--IAKLTQLHYLYI 108

Query: 393 SSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWL 452
           +   +S                          P+FL     L  LD S N + G +P  +
Sbjct: 109 THTNVS-----------------------GAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145

Query: 453 IEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLV 512
              S+ N   +                                                 
Sbjct: 146 --SSLPNLVGITFD---------------------------------------------- 157

Query: 513 SNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIP 572
             N ++G IP    + S     + +S N L+G +P    N +  L+ +DL  N   G   
Sbjct: 158 -GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--LAFVDLSRNMLEGDAS 214

Query: 573 QTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVL 632
             F S ++   I L+ N L   +   +    +L  LDL NN+I GT P  L  L+ L+ L
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273

Query: 633 ILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFT--GKLPS 671
            +  N L G I  P  G       +   +NN+      LP+
Sbjct: 274 NVSFNNLCGEI--PQGG-NLQRFDVSAYANNKCLCGSPLPA 311

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 95.3 bits (238), Expect = 2e-21
 Identities = 40/168 (23%), Positives = 61/168 (36%), Gaps = 14/168 (8%)

Query: 90  LDLSNSCLQGFINSSSGLFKLVHL-EWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGF 148
           +    + + G I  S        L   + ++ N     +IPP   NL+ L++++LS    
Sbjct: 154 ITFDGNRISGAIPDS--YGSFSKLFTSMTISRNRLT-GKIPPTFANLN-LAFVDLSRNML 209

Query: 149 FGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIP 208
            G          N   + L+ NS    +      +G       NL  L L    I   +P
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDL----GKVGLS----KNLNGLDLRNNRIYGTLP 261

Query: 209 HSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELP 256
             L  L  L  L++S   L G IP   GNL +      + N  L   P
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  236 bits (603), Expect = 2e-67
 Identities = 100/585 (17%), Positives = 195/585 (33%), Gaps = 53/585 (9%)

Query: 244 LDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKT 303
            +     L  E+P ++ N    + L+ S+N L      +   L +L  L+L+  +     
Sbjct: 17  YNCENLGL-NEIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 304 PHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKF 363
             +  +  RL  L L +N        +    ++L+ L   +   SS     L N   L+ 
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133

Query: 364 LEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFN--TSQKFNFVGLRSCNL 421
           L    N+ S  I L       + L+ L   +N +   +K   +         + L   ++
Sbjct: 134 LYLGSNHISS-IKLPKGF-PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191

Query: 422 NEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFP 481
                   +    + L+    +    + K L   ++Q+                      
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 482 RNYDGFTLDLSYNYLQGPLP---VPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLS 538
                 +++L  +Y               +   ++   L+ ++P  +   S  L+ L LS
Sbjct: 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLST-LKKLVLS 309

Query: 539 YNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSG-RSLMMIDLSDNLLQ--GRI 595
            N    L      NF   L+ L ++ N     +    L    +L  +DLS + ++     
Sbjct: 310 ANKFENLCQISASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC 368

Query: 596 PRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPEL 655
              L N S L+ L+L  N+             +L +L L   +L       +       L
Sbjct: 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD-AQSPFQNLHLL 427

Query: 656 RIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTM 715
           ++++LS++        + F    A+Q +N                               
Sbjct: 428 KVLNLSHSLLDI-SSEQLFDGLPALQHLNLQ----------------------------- 457

Query: 716 SNKGQMMSYDKVPNF-----LTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHIL 770
            N     +  K  +      L  ++LS          +  +LK +  + L++N L    +
Sbjct: 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517

Query: 771 SCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTG 815
             L +L G+  L+L++N  S  +P  L  L+     N+  N L  
Sbjct: 518 EALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  233 bits (597), Expect = 9e-67
 Identities = 109/578 (18%), Positives = 198/578 (34%), Gaps = 52/578 (8%)

Query: 112 HLEWLDLAFNYFICSEIPPEII-NLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHN 170
             E L+ +FN      I       L  L++L+L+    +            L +L L+ N
Sbjct: 34  STECLEFSFNVL--PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 171 SYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGR 230
               + E         +     LK L      ISS     L N  +L  L L    +   
Sbjct: 92  PLIFMAE-------TALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144

Query: 231 IPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKR--LDISWNELSGELPASIGNLAS 288
                    KL  LD   N +       + +L       L+++ N+++  +     + A 
Sbjct: 145 KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAV 203

Query: 289 LEQLELSLNRFRGKTPHSMGN--FTRLYWLSLASNDFSGELPASFGNLR--SLEGLDISE 344
            + L     +        + N     L+  +    D     PA F  L   S+E +++ +
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263

Query: 345 CKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAI 404
             F +   ++    + L+ L+ +  + S   +L   LV    L+ L LS+N+     +  
Sbjct: 264 HYFFNISSNTFHCFSGLQELDLTATHLS---ELPSGLVGLSTLKKLVLSANKFENLCQIS 320

Query: 405 FNTSQKFNFVGLRSCNL--NEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSY 462
            +       + ++            L+N   L  LDLS + I       L   ++ +   
Sbjct: 321 ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380

Query: 463 LNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIP 522
           LNLS+N  +                   L    L                +   L  K  
Sbjct: 381 LNLSYNEPLSL-------KTEAFKECPQLELLDL----------------AFTRLKVKDA 417

Query: 523 FWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQ---TFLSGR 579
                + + L++L+LS++ L     Q  D     L  L+LQ N F     Q   +  +  
Sbjct: 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP-ALQHLNLQGNHFPKGNIQKTNSLQTLG 476

Query: 580 SLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKL 639
            L ++ LS   L      +  +   +  +DL +N+++ +    L  L+ +  L L SN +
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI 535

Query: 640 HGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCW 677
             ++  P+      + R I+L  N       + YF  W
Sbjct: 536 SIIL--PSLLPILSQQRTINLRQNPLDCTCSNIYFLEW 571

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  221 bits (566), Expect = 2e-62
 Identities = 105/666 (15%), Positives = 201/666 (30%), Gaps = 135/666 (20%)

Query: 138 LSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELA 197
              L L+       IP  +   ++   L+ S N                           
Sbjct: 19  CENLGLNE------IPGTLP--NSTECLEFSFNV-------------------------- 44

Query: 198 LGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPT 257
                + +    + + L +LT L L+ C++         +  +L  L L+ N L+    T
Sbjct: 45  -----LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET 99

Query: 258 SIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLS 317
           ++     LK L      +S      + N  +LE L L  N              +L  L 
Sbjct: 100 ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159

Query: 318 LASNDFSGELPASFGNLRSLEG--LDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPI 375
             +N           +L+      L+++    +  I     + A  + L F        I
Sbjct: 160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVI 218

Query: 376 DLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLE 435
              +     + L   +         + A+F    + +                     +E
Sbjct: 219 FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS---------------------VE 257

Query: 436 VLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNY 495
            ++L  +                    L+L+   L      P           L LS N 
Sbjct: 258 SINLQKHYFFNISSNTF--HCFSGLQELDLTATHLSEL---PSGLVGLSTLKKLVLSANK 312

Query: 496 LQGPLPVPP------PQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQC 549
            +    +        P   H  +  N+   ++      +  +L  LDLS++++      C
Sbjct: 313 FEN---LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET-SDCC 368

Query: 550 LDNFSD--HLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRS-LVNCSSLK 606
                +  HL  L+L +N+      + F     L ++DL+   L+ +  +S   N   LK
Sbjct: 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428

Query: 607 FLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMI-REPNTGCGFPELRIIDLSNNRF 665
            L+L ++ +  +       L  L  L L+ N       ++ N+      L I+ LS    
Sbjct: 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488

Query: 666 TGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYD 725
           +  +    F         +   + +                                   
Sbjct: 489 SS-IDQHAFT--------SLKMMNH----------------------------------- 504

Query: 726 KVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLS 785
                   V LS NR       ++++LKG+  L+LA+N +   + S L  L+   +++L 
Sbjct: 505 --------VDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR 555

Query: 786 NNKFSG 791
            N    
Sbjct: 556 QNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  220 bits (563), Expect = 5e-62
 Identities = 96/558 (17%), Positives = 176/558 (31%), Gaps = 53/558 (9%)

Query: 126 SEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGN 185
           +EIP  +   +    L  S         +    L NL  LDL+                 
Sbjct: 25  NEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ-------------- 68

Query: 186 LVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLD 245
                            I      +  +   L  L L+   L     + L     L +L 
Sbjct: 69  -----------------IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111

Query: 246 LSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPH 305
                +       + N   L+ L +  N +S            L+ L+   N     +  
Sbjct: 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171

Query: 306 SMGNFTRLYWLSLASND-FSGELPASFGNLRSLEGLDISECKFSSQIPSSLRN--LAQLK 362
            M +  +   LSL  N      +     +    + L+    +    I   L+N  +  L 
Sbjct: 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLW 231

Query: 363 FLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLN 422
              F   +           +    +E ++L  +     +   F+       + L + +L+
Sbjct: 232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291

Query: 423 EFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPR 482
           E P+ L     L+ L LS NK    + +     +  + ++L++  N              
Sbjct: 292 ELPSGLVGLSTLKKLVLSANKFEN-LCQISAS-NFPSLTHLSIKGNTKRLELG-TGCLEN 348

Query: 483 NYDGFTLDLSYNYLQGPLPVPPPQTK-----HYL-VSNNSLTGKIPFWICNSSNSLEILD 536
             +   LDLS++ ++        Q +       L +S N     +          LE+LD
Sbjct: 349 LENLRELDLSHDDIET-SDCCNLQLRNLSHLQSLNLSYNEPLS-LKTEAFKECPQLELLD 406

Query: 537 LSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRI- 595
           L++  L     Q        L +L+L H+    S  Q F    +L  ++L  N       
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466

Query: 596 --PRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFP 653
               SL     L+ L L    +S        +L+ +N + L  N+L     E  +     
Sbjct: 467 QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL--- 523

Query: 654 ELRIIDLSNNRFTGKLPS 671
           +   ++L++N  +  LPS
Sbjct: 524 KGIYLNLASNHISIILPS 541

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  215 bits (550), Expect = 3e-60
 Identities = 104/549 (18%), Positives = 178/549 (32%), Gaps = 53/549 (9%)

Query: 90  LDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEII-NLSRLSYLNLSSAGF 148
           LDL+   +      +        L+ L L  N      +    +     L +L     G 
Sbjct: 62  LDLTRCQIYWIHEDT--FQSQHRLDTLVLTANPL--IFMAETALSGPKALKHLFFIQTGI 117

Query: 149 FGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIP 208
                  +     L SL L  N   ++  +K P           LK L      I     
Sbjct: 118 SSIDFIPLHNQKTLESLYLGSN---HISSIKLPKGFPT----EKLKVLDFQNNAIHYLSK 170

Query: 209 HSLANLSSLTL--LSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDC-- 264
             +++L   T   L+L+G ++ G I     +      L+      L  +   + N     
Sbjct: 171 EDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229

Query: 265 LKRLDISWNELSGELPASIGNLA--SLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASND 322
           L        +     PA    L   S+E + L  + F   + ++   F+ L  L L +  
Sbjct: 230 LWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289

Query: 323 FSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLV 382
            S ELP+    L +L+ L +S  KF +    S  N   L  L    N     +       
Sbjct: 290 LS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE- 347

Query: 383 NFKHLEHLSLSSNRLSL--FTKAIFNTSQKFNFVGLRSCNLNEF-PNFLKNQHYLEVLDL 439
           N ++L  L LS + +                  + L             K    LE+LDL
Sbjct: 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407

Query: 440 SCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGP 499
           +  ++  K  +   + ++     LNLSH+ L         F        L+L  N+    
Sbjct: 408 AFTRLKVKDAQSPFQ-NLHLLKVLNLSHSLLDIS--SEQLFDGLPALQHLNLQGNHFPKG 464

Query: 500 LPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSI 559
                   +                       LEIL LS+ +LS +      +    ++ 
Sbjct: 465 NIQKTNSLQT-------------------LGRLEILVLSFCDLSSIDQHAFTSLK-MMNH 504

Query: 560 LDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGT- 618
           +DL HN+   S  +     + +  ++L+ N +   +P  L   S  + ++L  N +  T 
Sbjct: 505 VDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563

Query: 619 ----FPSWL 623
               F  W 
Sbjct: 564 SNIYFLEWY 572

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  159 bits (403), Expect = 6e-41
 Identities = 85/369 (23%), Positives = 136/369 (36%), Gaps = 29/369 (7%)

Query: 86  HVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSS 145
            V  ++L         +++        L+ LDL   +   SE+P  ++ LS L  L LS+
Sbjct: 255 SVESINLQKHYFFNISSNT--FHCFSGLQELDLTATHL--SELPSGLVGLSTLKKLVLSA 310

Query: 146 AGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGG--VTI 203
             F            +L  L +  N+    +          ++ L NL+EL L    +  
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGT------GCLENLENLRELDLSHDDIET 364

Query: 204 SSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSI-GNL 262
           S      L NLS L  L+LS  E             +L  LDL+F  L  +   S   NL
Sbjct: 365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424

Query: 263 DCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNF---TRLYWLSLA 319
             LK L++S + L          L +L+ L L  N F         +     RL  L L+
Sbjct: 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484

Query: 320 SNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDM 379
             D S     +F +L+ +  +D+S  + +S    +L +L  + +L  + N+ S  +    
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIIL--PS 541

Query: 380 FLVNFKHLEHLSLSSNRLS------LFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHY 433
            L        ++L  N L        F +      QK        C     P  L+    
Sbjct: 542 LLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCE---NPPLLRGV-R 597

Query: 434 LEVLDLSCN 442
           L  + LSC+
Sbjct: 598 LSDVTLSCS 606

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  108 bits (272), Expect = 1e-24
 Identities = 53/318 (16%), Positives = 97/318 (30%), Gaps = 32/318 (10%)

Query: 526 CNSSNSLEILDLS---------------------YNNLSGLLPQCLDNFSDHLSILDLQH 564
           C      +  +                       +N L  +          +L+ LDL  
Sbjct: 8   CIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLI-NLTFLDLTR 66

Query: 565 NKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLG 624
            +       TF S   L  + L+ N L      +L    +LK L      IS      L 
Sbjct: 67  CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH 126

Query: 625 TLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVV- 683
             + L  L L SN +  +      G    +L+++D  NN     L  +          + 
Sbjct: 127 NQKTLESLYLGSNHISSIK--LPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLS 183

Query: 684 -NTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFD 742
            N +           F    + +L  +  +  +    + +    + + L          +
Sbjct: 184 LNLNGNDIAGIEPGAFDSAVFQSL-NFGGTQNLLVIFKGLKNSTIQS-LWLGTFEDMDDE 241

Query: 743 GEIPTSIANLKGLQV--LSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDL 800
              P     L  + V  ++L  +       +     +GL+ LDL+    S ++P  LV L
Sbjct: 242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGL 300

Query: 801 TFLEFFNVSNNNLTGPIP 818
           + L+   +S N       
Sbjct: 301 STLKKLVLSANKFENLCQ 318

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  107 bits (268), Expect = 5e-24
 Identities = 61/268 (22%), Positives = 106/268 (39%), Gaps = 19/268 (7%)

Query: 82  ENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEII-NLSRLSY 140
           EN  ++ +LDLS+  ++     +  L  L HL+ L+L++N      +  E      +L  
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP--LSLKTEAFKECPQLEL 404

Query: 141 LNLSSAGFFGQIPSEILE-LSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALG 199
           L+L+      +      + L  L  L+LSH+      E        L   L  L+ L L 
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE-------QLFDGLPALQHLNLQ 457

Query: 200 G---VTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELP 256
           G      +    +SL  L  L +L LS C+L         +L  + ++DLS N L     
Sbjct: 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517

Query: 257 TSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWL 316
            ++ +L  +  L+++ N +S  LP+ +  L+    + L  N     T  ++     L W 
Sbjct: 518 EALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC-TCSNIYF---LEWY 572

Query: 317 SLASNDFSGELPASFGNLRSLEGLDISE 344
                           N   L G+ +S+
Sbjct: 573 KENMQKLEDTEDTLCENPPLLRGVRLSD 600

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.3 bits (157), Expect = 1e-10
 Identities = 16/89 (17%), Positives = 29/89 (32%)

Query: 731 LTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFS 790
           LT + L+  +       +  +   L  L L  N L     + L     L+ L       S
Sbjct: 59  LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS 118

Query: 791 GQIPQQLVDLTFLEFFNVSNNNLTGPIPQ 819
                 L +   LE   + +N+++     
Sbjct: 119 SIDFIPLHNQKTLESLYLGSNHISSIKLP 147

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.5 bits (155), Expect = 2e-10
 Identities = 38/231 (16%), Positives = 63/231 (27%), Gaps = 35/231 (15%)

Query: 606 KFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRF 665
           K  +  N  ++   P  L        L    N L  +     T      L  +DL+  + 
Sbjct: 15  KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQ--NTTFSRLINLTFLDLTRCQI 69

Query: 666 TGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYD 725
              +    FQ        +   L                 L +    L    +  +    
Sbjct: 70  YW-IHEDTFQ--------SQHRLDT---------------LVLTANPLIFMAETALSG-- 103

Query: 726 KVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLS 785
             P  L  +              + N K L+ L L +N +    L        L+ LD  
Sbjct: 104 --PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ 161

Query: 786 NNKFSGQIPQQLVDLTFLE--FFNVSNNNLTGPIPQGNQFPTFDKTSFNGN 834
           NN       + +  L        N++ N++ G  P       F   +F G 
Sbjct: 162 NNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  235 bits (601), Expect = 3e-67
 Identities = 116/580 (20%), Positives = 199/580 (34%), Gaps = 62/580 (10%)

Query: 126 SEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGN 185
             + P I  +  ++           ++P +I   S+  ++DLS N    L  LK  +  N
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS-KVPDDIP--SSTKNIDLSFN---PLKILKSYSFSN 54

Query: 186 LVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLD 245
                + L+ L L    I +    +   L  L+ L L+G  ++   P     LT L  L 
Sbjct: 55  F----SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110

Query: 246 LSFNNLLGELPTSIGNLDCLKRLDISWNELSG-ELPASIGNLASLEQLELSLNRFRGKTP 304
                L       IG L  LK+L+++ N +   +LPA   NL +L  ++LS N  +  T 
Sbjct: 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170

Query: 305 HSMGNFTRLYW----LSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPS-SLRNLA 359
           + +            L ++ N        +F  +  L  L +     SS I    L+NLA
Sbjct: 171 NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLA 229

Query: 360 QLKFLEFSHNNFSGPIDLDMF------------------------------LVNFKHLEH 389
            L         F    +L++F                                   ++  
Sbjct: 230 GLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSA 289

Query: 390 LSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVP 449
           +SL+   +        +   +   + +  C L +FP    +  +L+ L L+ NK      
Sbjct: 290 MSLAGVSIKYLEDVPKHFKWQS--LSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISFK 345

Query: 450 KWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPP--PQT 507
           K     ++ + SYL+LS N L                  LDLS+N             + 
Sbjct: 346 KV----ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEEL 401

Query: 508 KHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKF 567
           +H    +++L     F    S   L  LD+SY N            +  L+ L +  N F
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT-SLNTLKMAGNSF 460

Query: 568 CGSIPQTFLSG-RSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTL 626
             +      +   +L  +DLS   L+            L+ L++ +N +     S    L
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520

Query: 627 RELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFT 666
             L+ L    N++               L   +L+NN   
Sbjct: 521 YSLSTLDCSFNRIETSK--GILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  216 bits (553), Expect = 1e-60
 Identities = 120/605 (19%), Positives = 195/605 (32%), Gaps = 67/605 (11%)

Query: 229 GRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLAS 288
           G +   +  +  +         L  ++P  I +    K +D+S+N L      S  N + 
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS-KVPDDIPSS--TKNIDLSFNPLKILKSYSFSNFSE 57

Query: 289 LEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFS 348
           L+ L+LS          +      L  L L  N      P SF  L SLE L   E K +
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 349 SQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTS 408
           S     +  L  LK L  +HN       L  +  N  +L H+ LS N +   T       
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHS-CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176

Query: 409 QKFNFVG----LRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLN 464
           ++   V     +    ++   +       L  L L  N     + K  ++ ++       
Sbjct: 177 RENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQ-NLAGLHVHR 235

Query: 465 LSHNFLIGFYQHPMFFPRNYDGFT------LDLSYNYLQGPLPVPPPQTKH--YL-VSNN 515
           L            +F P   +G          L+Y        V      +   + ++  
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295

Query: 516 SLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTF 575
           S+               + L +    L       L      L  L L  NK  GSI    
Sbjct: 296 SIKYLEDVP---KHFKWQSLSIIRCQLKQFPTLDLPF----LKSLTLTMNK--GSISFKK 346

Query: 576 LSGRSLMMIDLSDNLLQGRIPRSLVN--CSSLKFLDLGNNQISGTFPSWLGTLRELNVLI 633
           ++  SL  +DLS N L      S  +   +SL+ LDL  N       +    L EL  L 
Sbjct: 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLD 405

Query: 634 LKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEG 693
            + + L  +  E +      +L  +D+S            F           + L     
Sbjct: 406 FQHSTLKRVT-EFSAFLSLEKLLYLDISYTNTKI-DFDGIFL--------GLTSLNT--- 452

Query: 694 MIYPFALVSYAALGIYDYSLTMS-NKGQMMSYDKVPNFLTGV---ILSSNRFDGEIPTSI 749
                              L M+ N  +  +   V    T +    LS  + +       
Sbjct: 453 -------------------LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493

Query: 750 ANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVS 809
             L  LQ+L++++N+L     S    L  L +LD S N+              L FFN++
Sbjct: 494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLT 553

Query: 810 NNNLT 814
           NN++ 
Sbjct: 554 NNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  141 bits (358), Expect = 3e-35
 Identities = 67/321 (20%), Positives = 116/321 (36%), Gaps = 22/321 (6%)

Query: 82  ENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYL 141
           E    V   +   +    F +       L ++  + LA       +   ++    +   L
Sbjct: 256 EGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI---KYLEDVPKHFKWQSL 312

Query: 142 NLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGV 201
           ++       Q P+  L+L  L SL L+ N       +    +      L +L  L L   
Sbjct: 313 SIIRCQ-LKQFPT--LDLPFLKSLTLTMNK----GSISFKKVA-----LPSLSYLDLSRN 360

Query: 202 TISSPIPHSLANL--SSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTS- 258
            +S     S ++L  +SL  L LS       + +    L +L +LD   + L      S 
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSA 419

Query: 259 IGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSM-GNFTRLYWLS 317
             +L+ L  LDIS+     +       L SL  L+++ N F+  T  ++  N T L +L 
Sbjct: 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479

Query: 318 LASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDL 377
           L+           F  L  L+ L++S         S    L  L  L+ S N        
Sbjct: 480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK-- 537

Query: 378 DMFLVNFKHLEHLSLSSNRLS 398
            +     K L   +L++N ++
Sbjct: 538 GILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  127 bits (322), Expect = 9e-31
 Identities = 56/265 (21%), Positives = 88/265 (33%), Gaps = 20/265 (7%)

Query: 89  KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLS--SA 146
            L +    L+ F         L  L+ L L  N      I  + + L  LSYL+LS  + 
Sbjct: 311 SLSIIRCQLKQFPTLD-----LPFLKSLTLTMNKG---SISFKKVALPSLSYLDLSRNAL 362

Query: 147 GFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSP 206
            F G      L  ++L  LDLS N       +   N   L      L+ L     T+   
Sbjct: 363 SFSGCCSYSDLGTNSLRHLDLSFNG----AIIMSANFMGL----EELQHLDFQHSTLKRV 414

Query: 207 IPHS-LANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSI-GNLDC 264
              S   +L  L  L +S    +     +   LT L  L ++ N+      +++  N   
Sbjct: 415 TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474

Query: 265 LKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFS 324
           L  LD+S  +L          L  L+ L +S N               L  L  + N   
Sbjct: 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534

Query: 325 GELPASFGNLRSLEGLDISECKFSS 349
                     +SL   +++    + 
Sbjct: 535 TSKGILQHFPKSLAFFNLTNNSVAC 559

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 96.6 bits (241), Expect = 9e-21
 Identities = 45/198 (22%), Positives = 72/198 (36%), Gaps = 13/198 (6%)

Query: 81  NENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEII--NLSRL 138
           +  T  +  LDLS +        S+    L  L+ LD   +      +       +L +L
Sbjct: 372 DLGTNSLRHLDLSFNGAIIM---SANFMGLEELQHLDFQHSTL--KRVTEFSAFLSLEKL 426

Query: 139 SYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELAL 198
            YL++S            L L++L +L ++ NS       K+  L N+    TNL  L L
Sbjct: 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS------FKDNTLSNVFANTTNLTFLDL 480

Query: 199 GGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTS 258
               +          L  L LL++S   L     S    L  L  LD SFN +       
Sbjct: 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540

Query: 259 IGNLDCLKRLDISWNELS 276
                 L   +++ N ++
Sbjct: 541 QHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.1 bits (159), Expect = 6e-11
 Identities = 18/80 (22%), Positives = 28/80 (35%)

Query: 736 LSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQ 795
           LS    +     +   L  L  L L  N +          LT LE+L     K +     
Sbjct: 63  LSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESF 122

Query: 796 QLVDLTFLEFFNVSNNNLTG 815
            +  L  L+  NV++N +  
Sbjct: 123 PIGQLITLKKLNVAHNFIHS 142

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.1 bits (154), Expect = 2e-10
 Identities = 21/92 (22%), Positives = 29/92 (31%)

Query: 727 VPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSN 786
           +P+    + LS N        S +N   LQ L L+   +          L  L +L L+ 
Sbjct: 30  IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89

Query: 787 NKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIP 818
           N      P     LT LE        L     
Sbjct: 90  NPIQSFSPGSFSGLTSLENLVAVETKLASLES 121

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.6 bits (119), Expect = 4e-06
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 3/86 (3%)

Query: 734 VILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQI 793
                 +   ++P  I      + + L+ N L         N + L+ LDLS  +     
Sbjct: 16  YQCMDQKLS-KVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 794 PQQLVDLTFLEFFNVSNNNLTGPIPQ 819
            +    L  L    ++ N +    P 
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPG 98

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  200 bits (511), Expect = 2e-55
 Identities = 118/560 (21%), Positives = 198/560 (35%), Gaps = 50/560 (8%)

Query: 138 LSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELA 197
              LN         IP  +    +  +LDLS N    L  L   +  +       L+ L 
Sbjct: 14  CMELNFYK------IPDNLP--FSTKNLDLSFN---PLRHLGSYSFFSF----PELQVLD 58

Query: 198 LGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPT 257
           L    I +    +  +LS L+ L L+G  ++         L+ L  L     NL      
Sbjct: 59  LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118

Query: 258 SIGNLDCLKRLDISWNEL-SGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRL--- 313
            IG+L  LK L+++ N + S +LP    NL +LE L+LS N+ +      +    ++   
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 314 -YWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPS-SLRNLAQLKFLEFSHNNF 371
              L L+ N  +   P +F  +  L  L +     S  +    ++ LA L+        F
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

Query: 372 SGPIDLDMFLVN-FKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVG------LRSCNLNEF 424
               +L+ F  +  + L +L++   RL+     + +    FN +       L S  +   
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 425 PNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNY 484
            +F  N    + L+L   K             +++   L  + N       +        
Sbjct: 298 KDFSYNFG-WQHLELVNCKFG-----QFPTLKLKSLKRLTFTSNKG----GNAFSEVDLP 347

Query: 485 DGFTLDLSYNYLQGPLPVP-----PPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSY 539
               LDLS N L                K+  +S N +   +          LE LD  +
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQ-LEHLDFQH 405

Query: 540 NNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPR-S 598
           +NL  +    +     +L  LD+ H     +    F    SL ++ ++ N  Q       
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

Query: 599 LVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRII 658
                +L FLDL   Q+    P+   +L  L VL + SN+L  +            L+ I
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV--PDGIFDRLTSLQKI 523

Query: 659 DLSNNRFTGKLPS-KYFQCW 677
            L  N +    P   Y   W
Sbjct: 524 WLHTNPWDCSCPRIDYLSRW 543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  174 bits (444), Expect = 2e-46
 Identities = 105/577 (18%), Positives = 182/577 (31%), Gaps = 67/577 (11%)

Query: 245 DLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTP 304
                N   ++P ++      K LD+S+N L      S  +   L+ L+LS    +    
Sbjct: 13  QCMELNFY-KIPDNLPFS--TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 305 HSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFL 364
            +  + + L  L L  N        +F  L SL+ L   E   +S     + +L  LK L
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 365 EFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIF----NTSQKFNFVGLRSCN 420
             +HN       L  +  N  +LEHL LSSN++                    + L    
Sbjct: 130 NVAHNLIQS-FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 421 LNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFF 480
           +N        +  L  L L  N     V K  I+  +       L             F 
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ-GLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 481 PRNYDGFT-LDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSY 539
               +G   L +    L                +           + N   ++    L  
Sbjct: 248 KSALEGLCNLTIEEFRL----------------AYLDYYLDDIIDLFNCLTNVSSFSLVS 291

Query: 540 NNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSL 599
             +  +     +    HL +++ +  +F        L  +SL  +  + N        S 
Sbjct: 292 VTIERVKDFSYNFGWQHLELVNCKFGQF------PTLKLKSLKRLTFTSNKGGN--AFSE 343

Query: 600 VNCSSLKFLDLGNNQIS--GTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRI 657
           V+  SL+FLDL  N +S  G           L  L L  N +  M    +   G  +L  
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM---SSNFLGLEQLEH 400

Query: 658 IDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSN 717
           +D  ++          F         +   L Y               L I      ++ 
Sbjct: 401 LDFQHSNLKQMSEFSVFL--------SLRNLIY---------------LDISHTHTRVAF 437

Query: 718 KGQMMSYDKVPNFLTGVILSSNRFDGEIPTSI-ANLKGLQVLSLANNSLHGHILSCLGNL 776
            G    ++ + + L  + ++ N F       I   L+ L  L L+   L     +   +L
Sbjct: 438 NG---IFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 777 TGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNL 813
           + L+ L++++N+           LT L+   +  N  
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  130 bits (330), Expect = 7e-32
 Identities = 83/370 (22%), Positives = 135/370 (36%), Gaps = 22/370 (5%)

Query: 84  TGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNL 143
               + LDLS + +        G FK + L  L L  N+   + +   I  L+ L    L
Sbjct: 176 PLLNLSLDLSLNPMNFI---QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232

Query: 144 SSAGFFGQIPSEILE---LSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGG 200
               F  +   E  +   L  L +L +        ++    ++ +L   LTN+   +L  
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEF-RLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291

Query: 201 VTISSPIPHS-LANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSI 259
           VTI      S       L L++    +           L  L  L  + +N  G   + +
Sbjct: 292 VTIERVKDFSYNFGWQHLELVNCKFGQFPT------LKLKSLKRLTFT-SNKGGNAFSEV 344

Query: 260 GNLDCLKRLDISWNELS--GELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLS 317
            +L  L+ LD+S N LS  G    S     SL+ L+LS N        +     +L  L 
Sbjct: 345 -DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 402

Query: 318 LASNDFSGELPAS-FGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPID 376
              ++       S F +LR+L  LDIS              L+ L+ L+ + N+F     
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 377 LDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFP-NFLKNQHYLE 435
            D+F    ++L  L LS  +L   +   FN+      + + S  L   P         L+
Sbjct: 463 PDIF-TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521

Query: 436 VLDLSCNKIH 445
            + L  N   
Sbjct: 522 KIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  126 bits (319), Expect = 2e-30
 Identities = 92/491 (18%), Positives = 159/491 (32%), Gaps = 76/491 (15%)

Query: 89  KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGF 148
           KL    + L    N    +  L  L+ L++A N     ++P    NL+ L +L+LSS   
Sbjct: 104 KLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 149 FGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIP 208
                +++  L  +  L+LS +   N +   +P       K   L +L L     S  + 
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF----KEIRLHKLTLRNNFDSLNVM 217

Query: 209 H-SLANLSSLTLLSLSGCELRGRI------PSLLGNLTKLMYLDLSFNNL---LGELPTS 258
              +  L+ L +  L   E R          S L  L  L   +     L   L ++   
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277

Query: 259 IGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSL 318
              L  +    +    +      S       + LEL   +F       + +  RL     
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQFPTLKLKSLKRLT---F 332

Query: 319 ASNDFSGELPASFGNLRSLEGLDISECKFSSQ--IPSSLRNLAQLKFLEFSHNNFSGPID 376
            SN        S  +L SLE LD+S    S +     S      LK+L+ S N       
Sbjct: 333 TSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI---T 387

Query: 377 LDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEV 436
           +    +  + LEHL    + L   ++                       +   +   L  
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSE----------------------FSVFLSLRNLIY 425

Query: 437 LDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYL 496
           LD+S           +    + +   L ++ N     +  P  F    +   LDLS   L
Sbjct: 426 LDISHTHTRV-AFNGIFN-GLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLSQCQL 482

Query: 497 QGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDH 556
           +              +S  +             +SL++L+++ N L  +     D  +  
Sbjct: 483 EQ-------------LSPTAFNSL---------SSLQVLNMASNQLKSVPDGIFDRLT-S 519

Query: 557 LSILDLQHNKF 567
           L  + L  N +
Sbjct: 520 LQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  124 bits (314), Expect = 8e-30
 Identities = 73/493 (14%), Positives = 148/493 (30%), Gaps = 63/493 (12%)

Query: 335 RSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSS 394
            S + LD+S          S  +  +L+ L+ S       I+   +  +  HL  L L+ 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQ-SLSHLSTLILTG 85

Query: 395 NRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPN-FLKNQHYLEVLDLSCNKIHGKVPKWLI 453
           N +       F+       +     NL    N  + +   L+ L+++ N I         
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEY 144

Query: 454 EPSMQNFSYLNLSHNFLIGFYQHPMFFPRN--YDGFTLDLSYNYLQG--PLPVPPPQTKH 509
             ++ N  +L+LS N +   Y   +           +LDLS N +    P      +   
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204

Query: 510 YLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCG 569
             + NN  +  +          LE+  L               F +  ++     +   G
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE-----------FRNEGNLEKFDKSALEG 253

Query: 570 SIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFP-SWLGTLRE 628
            +    +    L  +D   +     I       +++    L +  I      S+    + 
Sbjct: 254 -LCNLTIEEFRLAYLDYYLDD----IIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQH 308

Query: 629 LNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSEL 688
           L ++  K  +                L+ +  ++N+                  V+   L
Sbjct: 309 LELVNCKFGQF--------PTLKLKSLKRLTFTSNKGGNAFSE-----------VDLPSL 349

Query: 689 RYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTS 748
            +               L +    L+         +      L  + LS N     + ++
Sbjct: 350 EF---------------LDLSRNGLSFKGCCSQSDFG--TTSLKYLDLSFNGVI-TMSSN 391

Query: 749 IANLKGLQVLSLANNSLHGHI-LSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFN 807
              L+ L+ L   +++L      S   +L  L  LD+S+             L+ LE   
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 808 VSNNNLTGPIPQG 820
           ++ N+        
Sbjct: 452 MAGNSFQENFLPD 464

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 96.3 bits (240), Expect = 1e-20
 Identities = 67/353 (18%), Positives = 118/353 (33%), Gaps = 32/353 (9%)

Query: 488 TLDLSYNYLQGPLPVPPPQTKHYL------VSNNSLTGKIPFWICNSSNSLEILDLSYNN 541
            LDLS+N L+    +       +       +S   +   I      S + L  L L+ N 
Sbjct: 32  NLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 542 LSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQ-GRIPRSLV 600
           +  L        S  L  L                  ++L  ++++ NL+Q  ++P    
Sbjct: 88  IQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 601 NCSSLKFLDLGNNQISGTFPSWLGTLRELNV----LILKSNKLHGMIREPNTGCGFPELR 656
           N ++L+ LDL +N+I   + + L  L ++ +    L L  N ++ +            L 
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE---IRLH 203

Query: 657 IIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEG----MIYPFALVSYAALGIYDYS 712
            + L NN  +  +     Q    ++V       +            AL     L I ++ 
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 713 LTMSNKGQMMSYD--KVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHIL 770
           L   +       D       ++   L S   +  +    +   G Q L L N        
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVK-DFSYNFGWQHLELVNCKFGQFPT 321

Query: 771 SCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQF 823
             L +L     L  ++NK         VDL  LEF ++S N L+         
Sbjct: 322 LKLKSLK---RLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSD 369

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 95.9 bits (239), Expect = 1e-20
 Identities = 63/314 (20%), Positives = 102/314 (32%), Gaps = 45/314 (14%)

Query: 513 SNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIP 572
              +   KIP  +     S + LDLS+N L  L      +F   L +LDL   +      
Sbjct: 15  MELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIED 69

Query: 573 QTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVL 632
             + S   L  + L+ N +Q     +    SSL+ L      ++      +G L+ L  L
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 633 ILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYME 692
            +  N +    + P        L  +DLS+N+                            
Sbjct: 130 NVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQS------------------------- 163

Query: 693 GMIYPFALVSYAALGIYDYSLTMS-NKGQMMSYDKVPNF-LTGVILSSNRFDGEIP-TSI 749
             IY   L     + + + SL +S N    +         L  + L +N     +  T I
Sbjct: 164 --IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI 221

Query: 750 ANLKGLQVLSLANNSLHGH---------ILSCLGNLTGLESLDLSNNKFSGQIPQQLVDL 800
             L GL+V  L                  L  L NLT  E      + +   I      L
Sbjct: 222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL 281

Query: 801 TFLEFFNVSNNNLT 814
           T +  F++ +  + 
Sbjct: 282 TNVSSFSLVSVTIE 295

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 3/81 (3%)

Query: 734 VILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQI 793
                  F  +IP ++      + L L+ N L         +   L+ LDLS  +     
Sbjct: 12  YQCMELNFY-KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 794 PQQLVDLTFLEFFNVSNNNLT 814
                 L+ L    ++ N + 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQ 89

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  192 bits (489), Expect = 7e-51
 Identities = 119/584 (20%), Positives = 198/584 (33%), Gaps = 51/584 (8%)

Query: 110 LVHLEWLDLAFNYFICSEIPPEII-NLSRLSYLNLSSAGFFGQIPSEILE-LSNLVSLDL 167
           L   E L L+FNY     +       L +L  L L S      I  E    L NL  LDL
Sbjct: 23  LNTTERLLLSFNYI--RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 168 SHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPI--PHSLANLSSLTLLSLSGC 225
             +  Y L         +  + L +L EL L    +S  +       NL +LT L LS  
Sbjct: 81  GSSKIYFLHP-------DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133

Query: 226 ELRG-RIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDC--LKRLDISWNELSGELPAS 282
           ++R   +    G L  L  +D S N +       +  L    L    ++ N L   +   
Sbjct: 134 QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD 193

Query: 283 IGN-LASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLD 341
            G  +     + L +           GN   +      SN  S     S      + G  
Sbjct: 194 WGKCMNPFRNMVLEILDVS-------GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246

Query: 342 ISECKFSSQIPSSLRNLAQ--LKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSL 399
                      ++   LA+  ++ L+ SH      ++  +F    K L+ L+L+ N+++ 
Sbjct: 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS-LNSRVF-ETLKDLKVLNLAYNKINK 304

Query: 400 FTKAIFNTSQKFNFVGLRSCNLNEFP-NFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQ 458
                F        + L    L E   +       +  +DL  N I     +      ++
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF--KFLE 362

Query: 459 NFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLT 518
               L+L  N L   +  P           + LS N L   LP          +S N L 
Sbjct: 363 KLQTLDLRDNALTTIHFIPSI-------PDIFLSGNKLVT-LPKINLTANLIHLSENRLE 414

Query: 519 GKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSG 578
                +       L+IL L+ N  S        + +  L  L L  N    +        
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474

Query: 579 -----RSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLI 633
                  L ++ L+ N L    P    + ++L+ L L +N+++    + L     L +L 
Sbjct: 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILD 532

Query: 634 LKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCW 677
           +  N+L     +      F  L ++D+++N+F  +     F  W
Sbjct: 533 ISRNQLLAPNPDV-----FVSLSVLDITHNKFICECELSTFINW 571

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  181 bits (461), Expect = 2e-47
 Identities = 127/634 (20%), Positives = 221/634 (34%), Gaps = 86/634 (13%)

Query: 215 SSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNE 274
               +     C L  ++P +L        L LSFN +     +S   L+ L+ L++    
Sbjct: 4   FDGRIAFYRFCNLT-QVPQVLNTTE---RLLLSFNYIRTVTASSFPFLEQLQLLELGSQY 59

Query: 275 LSGEL-PASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGEL--PASF 331
               +   +  NL +L  L+L  ++     P +      L+ L L     S  +     F
Sbjct: 60  TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119

Query: 332 GNLRSLEGLDISECKFSS-QIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHL 390
            NL++L  LD+S+ +  S  +  S   L  LK ++FS N      + ++  +  K L   
Sbjct: 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179

Query: 391 SLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPK 450
           SL++N L       +                 +  N  +N   LE+LD+S N     +  
Sbjct: 180 SLAANSLYSRVSVDWG----------------KCMNPFRNMV-LEILDVSGNGWTVDITG 222

Query: 451 WLI-EPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKH 509
                 S      L L+H+ +                      ++ ++            
Sbjct: 223 NFSNAISKSQAFSLILAHHIM-----------------GAGFGFHNIKD----------- 254

Query: 510 YLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCG 569
                N+  G          +S+  LDLS+  +  L  +  +     L +L+L +NK   
Sbjct: 255 --PDQNTFAGLA-------RSSVRHLDLSHGFVFSLNSRVFETLK-DLKVLNLAYNKINK 304

Query: 570 SIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLREL 629
              + F    +L +++LS NLL      +      + ++DL  N I+         L +L
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL 364

Query: 630 NVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELR 689
             L L+ N L  +          P +  I LS N+    LP       N + +     L 
Sbjct: 365 QTLDLRDNALTTI-------HFIPSIPDIFLSGNKLV-TLPKINLTA-NLIHLSENR-LE 414

Query: 690 YMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSI 749
            ++ + +   +     L +     +  +  Q  S       L  + L  N       T +
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS---ENPSLEQLFLGENMLQLAWETEL 471

Query: 750 -----ANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLE 804
                  L  LQVL L +N L+        +LT L  L L++N+ +      L     LE
Sbjct: 472 CWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLE 529

Query: 805 FFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLC 838
             ++S N L  P P    F +        N  +C
Sbjct: 530 ILDISRNQLLAPNPD--VFVSLSVLDITHNKFIC 561

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  174 bits (442), Expect = 5e-45
 Identities = 93/551 (16%), Positives = 185/551 (33%), Gaps = 70/551 (12%)

Query: 90  LDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFF 149
           L L    L   +        L  L  LDL+ N      + P    L+ L  ++ SS    
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QI 160

Query: 150 GQIPSEI---LELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSP 206
             +       L+   L    L+ NS Y+ + +      N  + +  L+ L + G   +  
Sbjct: 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM-VLEILDVSGNGWTVD 219

Query: 207 IPHSLAN-LSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDC- 264
           I  + +N +S     SL                  +M     F+N+      +   L   
Sbjct: 220 ITGNFSNAISKSQAFSLI-------------LAHHIMGAGFGFHNIKDPDQNTFAGLARS 266

Query: 265 -LKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDF 323
            ++ LD+S   +          L  L+ L L+ N+       +      L  L+L+ N  
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326

Query: 324 SGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVN 383
                ++F  L  +  +D+ +   +     + + L +L+ L+   N  +        +  
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-------TIHF 379

Query: 384 FKHLEHLSLSSNRL-SLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCN 442
              +  + LS N+L +L    +       +   L + ++  F   + +   L++L L+ N
Sbjct: 380 IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPH---LQILILNQN 436

Query: 443 KIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFT----LDLSYNYLQG 498
           +               +   L L  N  +            ++G +    L L++NYL  
Sbjct: 437 RFSSCSGDQTPS-ENPSLEQLFLGENM-LQLAWETELCWDVFEGLSHLQVLYLNHNYLN- 493

Query: 499 PLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLS 558
                                 +P  + +   +L  L L+ N L+ L     ++   +L 
Sbjct: 494 ---------------------SLPPGVFSHLTALRGLSLNSNRLTVLSH---NDLPANLE 529

Query: 559 ILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIP----RSLVNCSSLKFLDLGNNQ 614
           ILD+  N+     P  F    SL ++D++ N            + +N +++       + 
Sbjct: 530 ILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADI 586

Query: 615 ISGTFPSWLGT 625
                 S+ G 
Sbjct: 587 YCVYPDSFSGV 597

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 98.3 bits (245), Expect = 4e-21
 Identities = 52/309 (16%), Positives = 101/309 (32%), Gaps = 27/309 (8%)

Query: 526 CNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMID 585
           C+      I    + NL+ + PQ L+        L L  N        +F     L +++
Sbjct: 2   CSFDGR--IAFYRFCNLTQV-PQVLNT----TERLLLSFNYIRTVTASSFPFLEQLQLLE 54

Query: 586 LSDNLLQGRI-PRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIR 644
           L        I   +  N  +L+ LDLG+++I    P     L  L  L L    L   + 
Sbjct: 55  LGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVL 114

Query: 645 EPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYA 704
           +         L  +DLS N+         F   N+++ ++ S  +      +    +   
Sbjct: 115 KDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174

Query: 705 ALGIYDYSLTMSNKGQMMSYDKVPNFLTGVIL-----SSNRFDGEIP------------T 747
            L  +  +         + + K  N    ++L     S N +  +I              
Sbjct: 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234

Query: 748 SIANLKGLQVLSLANNSLHGHILSCLGNL--TGLESLDLSNNKFSGQIPQQLVDLTFLEF 805
           S+     +       +++     +    L  + +  LDLS+        +    L  L+ 
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294

Query: 806 FNVSNNNLT 814
            N++ N + 
Sbjct: 295 LNLAYNKIN 303

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  171 bits (434), Expect = 2e-45
 Identities = 104/548 (18%), Positives = 197/548 (35%), Gaps = 70/548 (12%)

Query: 138 LSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELA 197
               + +S      IPS +   + + SLDLS N    +  +   +L        NL+ L 
Sbjct: 12  GRSRSFTS------IPSGLT--AAMKSLDLSFN---KITYIGHGDLRAC----ANLQVLI 56

Query: 198 LGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLG-ELP 256
           L    I++    +  +L SL  L LS   L     S  G L+ L YL+L  N      + 
Sbjct: 57  LKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT 116

Query: 257 TSIGNLDCLKRLDISWNELSGELPA-SIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYW 315
           +   NL  L+ L I   E   E+       L SL +LE+     R     S+ +   ++ 
Sbjct: 117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176

Query: 316 LSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLE--------FS 367
           L+L  ++ +  L      L S+  L++ +   +    S L        ++         +
Sbjct: 177 LTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236

Query: 368 HNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVG---LRSCNLNEF 424
             +F+  + L  +++    +E    + N L  F  +  +   +   V    +R  ++ +F
Sbjct: 237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF 296

Query: 425 ------PNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPM 478
                          ++ + +  +K+   VP    +  +++  +L+LS N ++  Y    
Sbjct: 297 YLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQ-HLKSLEFLDLSENLMVEEYLKNS 354

Query: 479 FFPRNYDG-FTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDL 537
                +    TL LS N+L+  +                        I  +  +L  LD+
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRS-MQKTG-------------------EILLTLKNLTSLDI 394

Query: 538 SYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPR 597
           S N    +   C     + +  L+L        +        +L ++D+S+N L      
Sbjct: 395 SRNTFHPMPDSCQW--PEKMRFLNLSSTGI-RVVKTCIPQ--TLEVLDVSNNNLD-SFSL 448

Query: 598 SLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRI 657
            L     L+ L +  N++  T P        L V+ +  N+L  +            L+ 
Sbjct: 449 FL---PRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSV--PDGIFDRLTSLQK 501

Query: 658 IDLSNNRF 665
           I L  N +
Sbjct: 502 IWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  161 bits (408), Expect = 6e-42
 Identities = 98/535 (18%), Positives = 175/535 (32%), Gaps = 57/535 (10%)

Query: 112 HLEWLDLAFNYFICSEIPPEII-NLSRLSYLNLSSAGFFGQIPSEILE-LSNLVSLDLSH 169
            ++ LDL+FN    + I    +   + L  L L S+     I  +    L +L  LDLS 
Sbjct: 27  AMKSLDLSFNKI--TYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSD 83

Query: 170 NSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISS-PIPHSLANLSSLTLLSLSGCELR 228
           N   +L  L     G     L++LK L L G    +  +     NL++L  L +   E  
Sbjct: 84  N---HLSSLSSSWFGP----LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136

Query: 229 GRIP-SLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLA 287
             I       LT L  L++   +L      S+ ++  +  L +  +E +  L      L+
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS 196

Query: 288 SLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKF 347
           S+  LEL            +        +   +   S     SF  L  L    +   + 
Sbjct: 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256

Query: 348 SSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNT 407
                    +       +F+ +      +L    V    +  L +    L      +++ 
Sbjct: 257 ------EFDDCTLNGLGDFNPSESDVVSEL--GKVETVTIRRLHIPQFYLFYDLSTVYSL 308

Query: 408 SQKFNFVGLRSCNLNEFP-NFLKNQHYLEVLDLSCNKIHGKVPKWLIEPS-MQNFSYLNL 465
            +K   + + +  +   P +F ++   LE LDLS N +  +  K         +   L L
Sbjct: 309 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368

Query: 466 SHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWI 525
           S N L    +         +  +LD+S N                               
Sbjct: 369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS----------------------- 405

Query: 526 CNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMID 585
           C     +  L+LS   +  +           L +LD+ +N     +    L    L  + 
Sbjct: 406 CQWPEKMRFLNLSSTGIRVVKTCIPQT----LEVLDVSNNN----LDSFSLFLPRLQELY 457

Query: 586 LSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLH 640
           +S N L+  +P +      L  + +  NQ+          L  L  + L +N   
Sbjct: 458 ISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  160 bits (407), Expect = 8e-42
 Identities = 95/582 (16%), Positives = 175/582 (30%), Gaps = 94/582 (16%)

Query: 244 LDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKT 303
            D    +    +P+ +     +K LD+S+N+++      +   A+L+ L L  +R     
Sbjct: 10  CDGRSRSF-TSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE 66

Query: 304 PHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSS-QIPSSLRNLAQLK 362
             +  +   L  L L+ N  S    + FG L SL+ L++    + +  + S   NL  L+
Sbjct: 67  GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126

Query: 363 FLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLN 422
            L   +      I    F      L  L + +  L  +      + +  + + L      
Sbjct: 127 TLRIGNVETFSEIRRIDFA-GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

Query: 423 EFPN-FLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFP 481
                F      +  L+L    +     ++   P  +  S +                  
Sbjct: 186 FLLEIFADILSSVRYLELRDTNLAR--FQFSPLPVDEVSSPMKKLAFRGSVL-------- 235

Query: 482 RNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNN 541
                   D S+N L                                 + +E  D + N 
Sbjct: 236 -------TDESFNELLKL-----------------------LRYILELSEVEFDDCTLNG 265

Query: 542 LSGLLPQCLDNFSD-------HLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGR 594
           L    P   D  S+        +  L +        +   +     +  I + ++ +   
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV 325

Query: 595 IPRSLVNCSSLKFLDLGNNQISGTF---PSWLGTLRELNVLILKSNKLHGMIREPNTGCG 651
                 +  SL+FLDL  N +   +    +  G    L  L+L  N L  M +       
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385

Query: 652 FPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDY 711
              L  +D+S N F     S               ++R+                     
Sbjct: 386 LKNLTSLDISRNTFHPMPDS----------CQWPEKMRF--------------------- 414

Query: 712 SLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILS 771
            L +S+ G  +    +P  L  + +S+N  D         L  LQ L ++ N L    L 
Sbjct: 415 -LNLSSTGIRVVKTCIPQTLEVLDVSNNNLD-SFS---LFLPRLQELYISRNKLK--TLP 467

Query: 772 CLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNL 813
                  L  + +S N+           LT L+   +  N  
Sbjct: 468 DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  147 bits (374), Expect = 1e-37
 Identities = 86/481 (17%), Positives = 157/481 (32%), Gaps = 53/481 (11%)

Query: 90  LDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFF 149
           LDLS++ L     SSS    L  L++L+L  N +    +     NL+ L  L + +   F
Sbjct: 79  LDLSDNHLSSL--SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136

Query: 150 GQIPSEILE-LSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIP 208
            +I       L++L  L++      +L   +  +L +    + ++  L L     +  + 
Sbjct: 137 SEIRRIDFAGLTSLNELEIKAL---SLRNYQSQSLKS----IRDIHHLTLHLSESAFLLE 189

Query: 209 HSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRL 268
                LSS+  L L    L     S L        +             S   L  L R 
Sbjct: 190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249

Query: 269 DISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELP 328
            +  +E+         +       + + +     +         +  L +       +L 
Sbjct: 250 ILELSEV------EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303

Query: 329 ASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFS-GPIDLDMFLVNFKHL 387
             +  L  ++ + +   K      S  ++L  L+FL+ S N      +        +  L
Sbjct: 304 TVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363

Query: 388 EHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGK 447
           + L LS N L                      ++ +    L     L  LD+S N  H  
Sbjct: 364 QTLVLSQNHLR---------------------SMQKTGEILLTLKNLTSLDISRNTFHPM 402

Query: 448 VPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFT-LDLSYNYLQGPLPVPPPQ 506
                    M+   +LNLS   +       +           LD+S N L     +  P+
Sbjct: 403 PDSCQWPEKMR---FLNLSSTGI------RVVKTCIPQTLEVLDVSNNNLDS-FSLFLPR 452

Query: 507 TKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNK 566
            +   +S N L   +P    +    L ++ +S N L  +     D  +  L  + L  N 
Sbjct: 453 LQELYISRNKLK-TLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLT-SLQKIWLHTNP 508

Query: 567 F 567
           +
Sbjct: 509 W 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  115 bits (289), Expect = 7e-27
 Identities = 70/399 (17%), Positives = 132/399 (33%), Gaps = 57/399 (14%)

Query: 89  KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEII-NLSRLSYLNLSSAG 147
            L + N      I        L  L  L++            + + ++  + +L L  + 
Sbjct: 127 TLRIGNVETFSEIRRID-FAGLTSLNELEIKALSL--RNYQSQSLKSIRDIHHLTLHLSE 183

Query: 148 FFGQIPSEILELSNLVSLDLSHNSYY------------------------NLIELKEPNL 183
               +      LS++  L+L   +                           L +     L
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243

Query: 184 GNLVKKLTNLKELALGGVTI---------SSPIPHSLANLSSLTL--LSLSGCELRGRIP 232
             L++ +  L E+     T+          S +   L  + ++T+  L +    L   + 
Sbjct: 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303

Query: 233 SLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGEL---PASIGNLASL 289
           ++   L K+  + +  + +     +   +L  L+ LD+S N +  E     A  G   SL
Sbjct: 304 TVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363

Query: 290 EQLELSLNRFR--GKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKF 347
           + L LS N  R   KT   +     L  L ++ N F   +P S      +  L++S    
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI 422

Query: 348 SSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNT 407
              + + +     L+ L+ S+NN      LD F +    L+ L +S N+L     A    
Sbjct: 423 RV-VKTCI--PQTLEVLDVSNNN------LDSFSLFLPRLQELYISRNKLKTLPDASLFP 473

Query: 408 SQKFNFVGLRSCNLNEFP-NFLKNQHYLEVLDLSCNKIH 445
                 + +    L   P         L+ + L  N   
Sbjct: 474 V--LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 99.8 bits (249), Expect = 7e-22
 Identities = 73/412 (17%), Positives = 140/412 (33%), Gaps = 28/412 (6%)

Query: 412 NFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLI 471
                RS +    P+ L     ++ LDLS NKI   +    +  +  N   L L  + + 
Sbjct: 8   GVCDGRSRSFTSIPSGLTAA--MKSLDLSFNKIT-YIGHGDL-RACANLQVLILKSSRIN 63

Query: 472 GFYQHPMFFPRNYDGFTLDLSYNYLQGPLPV----PPPQTKHYLVSNNSLTGKIPFWICN 527
                   F        LDLS N+L   L      P    K+  +  N         +  
Sbjct: 64  TI--EGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120

Query: 528 SSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLS 587
           +  +L+ L +        + +        L+ L+++         Q+  S R +  + L 
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180

Query: 588 DNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPN 647
            +     +       SS+++L+L +  ++    S L      + +   + +   +  E  
Sbjct: 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240

Query: 648 TGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALG 707
                    I++LS   F           +N  +    SEL  +E        V+   L 
Sbjct: 241 NELLKLLRYILELSEVEFDD-CTLNGLGDFNPSESDVVSELGKVE-------TVTIRRLH 292

Query: 708 IYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHG 767
           I  + L          Y  +   +  + + +++      +   +LK L+ L L+ N +  
Sbjct: 293 IPQFYLFYDLST---VYSLLEK-VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE 348

Query: 768 HIL---SCLGNLTGLESLDLSNNKFS--GQIPQQLVDLTFLEFFNVSNNNLT 814
             L   +C G    L++L LS N      +  + L+ L  L   ++S N   
Sbjct: 349 EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 80.2 bits (198), Expect = 1e-15
 Identities = 56/306 (18%), Positives = 105/306 (34%), Gaps = 26/306 (8%)

Query: 513 SNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIP 572
            + S T  IP  +   + +++ LDLS+N ++ +    L   + +L +L L+ ++      
Sbjct: 13  RSRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACA-NLQVLILKSSRINTIEG 67

Query: 573 QTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISG-TFPSWLGTLRELNV 631
             F S  SL  +DLSDN L           SSLK+L+L  N        S    L  L  
Sbjct: 68  DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127

Query: 632 LILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTS--ELR 689
           L + + +    IR      G   L  +++          S+  +    +  +     E  
Sbjct: 128 LRIGNVETFSEIR-RIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESA 185

Query: 690 YMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSI 749
           ++  +     L S   L + D +L         S   V    + +   + R       S 
Sbjct: 186 FLLEIFAD-ILSSVRYLELRDTNLARFQ----FSPLPVDEVSSPMKKLAFRGSVLTDESF 240

Query: 750 ANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVS 809
             L  L    L  + +         + T     D + ++        + +L  +E   + 
Sbjct: 241 NELLKLLRYILELSEVE------FDDCTLNGLGDFNPSESD-----VVSELGKVETVTIR 289

Query: 810 NNNLTG 815
             ++  
Sbjct: 290 RLHIPQ 295

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 75.9 bits (187), Expect = 2e-14
 Identities = 44/302 (14%), Positives = 91/302 (30%), Gaps = 32/302 (10%)

Query: 531 SLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNL 590
           +  + D    + + +        +  +  LDL  NK          +  +L ++ L  + 
Sbjct: 6   ASGVCDGRSRSFTSIPS----GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 591 LQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGC 650
           +      +  +  SL+ LDL +N +S    SW G L  L  L L  N     +   +   
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFP 120

Query: 651 GFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYD 710
               L+ + + N     ++    F           + L                 L I  
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFA--------GLTSLNE---------------LEIKA 157

Query: 711 YSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHIL 770
            SL         S   + + +  + L  +     +      L  ++ L L + +L     
Sbjct: 158 LSLRNYQSQ---SLKSIRD-IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQF 213

Query: 771 SCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTS 830
           S L        +     + S    +   +L  L  + +  + +       N    F+ + 
Sbjct: 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273

Query: 831 FN 832
            +
Sbjct: 274 SD 275

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 75.1 bits (185), Expect = 4e-14
 Identities = 38/264 (14%), Positives = 82/264 (31%), Gaps = 39/264 (14%)

Query: 555 DHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQ 614
           D   + D +   F  SIP    +  ++  +DLS N +       L  C++L+ L L +++
Sbjct: 5   DASGVCDGRSRSF-TSIPSGLTA--AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 615 ISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYF 674
           I+        +L  L  L L  N L  +    +       L+ ++L  N +     +  F
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSL--SSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 675 QCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVP----NF 730
                    N + L+                       L + N        ++       
Sbjct: 120 P--------NLTNLQT----------------------LRIGNVETFSEIRRIDFAGLTS 149

Query: 731 LTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFS 790
           L  + + +         S+ +++ +  L+L  +     +      L+ +  L+L +   +
Sbjct: 150 LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA 209

Query: 791 GQIPQQLVDLTFLEFFNVSNNNLT 814
                 L                +
Sbjct: 210 RFQFSPLPVDEVSSPMKKLAFRGS 233

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.4 bits (126), Expect = 5e-07
 Identities = 33/217 (15%), Positives = 67/217 (30%), Gaps = 35/217 (16%)

Query: 600 VNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIID 659
           ++C +    D  +   + + PS L     +  L L  NK+  +            L+++ 
Sbjct: 2   LSCDASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYI--GHGDLRACANLQVLI 56

Query: 660 LSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKG 719
           L ++R    +    F         +   L +               L + D  L+  +  
Sbjct: 57  LKSSRIN-TIEGDAFY--------SLGSLEH---------------LDLSDNHLSSLSSS 92

Query: 720 QMMSYDKVPNFLTGVILSSNRFDG-EIPTSIANLKGLQVLSLANNSLHGHIL-SCLGNLT 777
               +  + + L  + L  N +    + +   NL  LQ L + N      I       LT
Sbjct: 93  ---WFGPLSS-LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148

Query: 778 GLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLT 814
            L  L++          Q L  +  +    +  +   
Sbjct: 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  158 bits (401), Expect = 1e-41
 Identities = 97/502 (19%), Positives = 179/502 (35%), Gaps = 54/502 (10%)

Query: 101 INSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELS 160
           IN       L       L       ++      +L +++ L     G   +    +  L+
Sbjct: 14  INQIFTDTALAEKMKTVLGKTNV--TDTVS-QTDLDQVTTLQADRLGI--KSIDGVEYLN 68

Query: 161 NLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLL 220
           NL  ++ S+N   ++  L         K LT L ++ +    I+   P  LANL++LT L
Sbjct: 69  NLTQINFSNNQLTDITPL---------KNLTKLVDILMNNNQIADITP--LANLTNLTGL 117

Query: 221 SLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELP 280
           +L   ++    P  L NLT L  L+LS N +     +++  L  L++L    N+++   P
Sbjct: 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKP 172

Query: 281 ASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGL 340
             + NL +LE+L++S N+        +   T L  L   +N  S   P   G L +L+ L
Sbjct: 173 --LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 226

Query: 341 DISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLF 400
            ++  +       +L +L  L  L+ ++N  S    L         L  L L +N++S  
Sbjct: 227 SLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS----GLTKLTELKLGANQISNI 280

Query: 401 TKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEP--SMQ 458
           +            + L    L +       ++ L  L L  N I        I P  S+ 
Sbjct: 281 SP--LAGLTALTNLELNENQLEDISPISNLKN-LTYLTLYFNNISD------ISPVSSLT 331

Query: 459 NFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYL-VSNNSL 517
               L   +N +              +   L   +N +    P+        L +++ + 
Sbjct: 332 KLQRLFFYNNKVSD----VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAW 387

Query: 518 TGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLS 577
           T        N   ++ I +   N    L+     +     +  D+  N       +   +
Sbjct: 388 TNAPV----NYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLP-SYTNEVSYT 442

Query: 578 GRSLMMIDLSDNLLQGRIPRSL 599
               + I        G + + L
Sbjct: 443 FSQPVTIGKGTTTFSGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  156 bits (396), Expect = 5e-41
 Identities = 102/513 (19%), Positives = 178/513 (34%), Gaps = 75/513 (14%)

Query: 159 LSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLT 218
           L+  +   L   +  + +   +         L  +  L    + I S     +  L++LT
Sbjct: 23  LAEKMKTVLGKTNVTDTVSQTD---------LDQVTTLQADRLGIKSIDG--VEYLNNLT 71

Query: 219 LLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGE 278
            ++ S  +L    P  L NLTKL+ + ++ N +     T + NL  L  L +  N+++  
Sbjct: 72  QINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITD- 126

Query: 279 LPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLE 338
               + NL +L +LELS N        ++   T L  LS   N  +   P    NL +LE
Sbjct: 127 -IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTDLKP--LANLTTLE 180

Query: 339 GLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLS 398
            LDIS  K S    S L  L  L+ L  ++N  S    L        +L+ LSL+ N+L 
Sbjct: 181 RLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLG----ILTNLDELSLNGNQLK 234

Query: 399 LFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQ 458
                   +      + L +  ++     L     L  L L  N+I            + 
Sbjct: 235 DIG--TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISN-------ISPLA 284

Query: 459 NFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYL-VSNNSL 517
             + L                         L+L+ N L+   P+   +   YL +  N++
Sbjct: 285 GLTALT-----------------------NLELNENQLEDISPISNLKNLTYLTLYFNNI 321

Query: 518 TGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLS 577
           +   P    +S   L+ L    N +S +    L N + +++ L   HN+     P   L+
Sbjct: 322 SDISPV---SSLTKLQRLFFYNNKVSDVSS--LANLT-NINWLSAGHNQISDLTPLANLT 375

Query: 578 GRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSN 637
              +  + L+D            N S    +      +    P+ +          +  N
Sbjct: 376 --RITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWN 431

Query: 638 KLHGMIREPNTGCGFPELRIIDLSNNRFTGKLP 670
                         F +   I      F+G + 
Sbjct: 432 LPSYT---NEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  127 bits (320), Expect = 4e-31
 Identities = 106/588 (18%), Positives = 192/588 (32%), Gaps = 142/588 (24%)

Query: 210 SLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLD 269
           +   L+      L    +   +     +L ++  L      +       +  L+ L +++
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 74

Query: 270 ISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPA 329
            S N+L+   P  + NL  L  + ++ N+    TP  + N T L  L+L +N  +     
Sbjct: 75  FSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD--ID 128

Query: 330 SFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEH 389
              NL +L  L++S    S    S+L  L  L+ L F  N  +    L     N   LE 
Sbjct: 129 PLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKPLA----NLTTLER 181

Query: 390 LSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVP 449
           L +SSN++S                           + L     LE L  + N+I     
Sbjct: 182 LDISSNKVS-------------------------DISVLAKLTNLESLIATNNQISD--- 213

Query: 450 KWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKH 509
                  +   + L+                        L L+ N L+    +       
Sbjct: 214 ----ITPLGILTNLD-----------------------ELSLNGNQLKDIGTL------- 239

Query: 510 YLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCG 569
                 SLT            +L  LDL+ N +S L P  L   +  L+ L L  N+   
Sbjct: 240 -----ASLT------------NLTDLDLANNQISNLAP--LSGLT-KLTELKLGANQISN 279

Query: 570 SIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLREL 629
             P   L+  +L  ++L++N L+   P  + N  +L +L L  N IS   P  + +L +L
Sbjct: 280 ISPLAGLT--ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKL 333

Query: 630 NVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELR 689
             L   +NK    + + ++      +  +   +N+ +   P           + N + + 
Sbjct: 334 QRLFFYNNK----VSDVSSLANLTNINWLSAGHNQISDLTP-----------LANLTRIT 378

Query: 690 YMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSI 749
                           LG+ D              +   N      + +       P +I
Sbjct: 379 Q---------------LGLND------QAWTNAPVNYKANVSIPNTVKNVTGALIAPATI 417

Query: 750 ANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQL 797
           ++        +  N             +   ++      FSG + Q L
Sbjct: 418 SDGGSYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFSGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  123 bits (310), Expect = 9e-30
 Identities = 74/325 (22%), Positives = 124/325 (38%), Gaps = 35/325 (10%)

Query: 89  KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGF 148
           +L   N      +     L  L  LE LD++ N          +  L+ L  L  ++   
Sbjct: 160 QLSFGNQ-----VTDLKPLANLTTLERLDISSNKV---SDISVLAKLTNLESLIATNNQI 211

Query: 149 FGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIP 208
               P  +  L+NL  L L+ N   ++  L           LTNL +L L    IS+  P
Sbjct: 212 SDITP--LGILTNLDELSLNGNQLKDIGTLA---------SLTNLTDLDLANNQISNLAP 260

Query: 209 HSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRL 268
             L+ L+ LT L L   ++    P  L  LT L  L+L+ N L     + I NL  L  L
Sbjct: 261 --LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED--ISPISNLKNLTYL 314

Query: 269 DISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELP 328
            + +N +S   P  + +L  L++L    N+       S+ N T + WLS   N  S   P
Sbjct: 315 TLYFNNISDISP--VSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTP 370

Query: 329 ASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLE 388
               NL  +  L +++  +++   +   N++    ++        P      + +     
Sbjct: 371 --LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPAT----ISDGGSYT 424

Query: 389 HLSLSSNRLSLFTKAIFNTSQKFNF 413
              ++ N  S   +  +  SQ    
Sbjct: 425 EPDITWNLPSYTNEVSYTFSQPVTI 449

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  116 bits (292), Expect = 2e-27
 Identities = 95/514 (18%), Positives = 172/514 (33%), Gaps = 117/514 (22%)

Query: 309 NFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSH 368
                    L   + +  +     +L  +  L        S     +  L  L  + FS+
Sbjct: 22  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 77

Query: 369 NNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFL 428
           N  +    L     N   L  + +++N+++                     ++    N L
Sbjct: 78  NQLTDITPLK----NLTKLVDILMNNNQIA---------------------DITPLAN-L 111

Query: 429 KNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYL-NLSHNFLIGFYQHPMFFPRNYDGF 487
            N   L  L L  N+I            +     L NL+                     
Sbjct: 112 TN---LTGLTLFNNQIT----------DIDPLKNLTNLNR-------------------- 138

Query: 488 TLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLP 547
            L+LS N +     +    +   L   N +T   P     +   LE LD+S N +S +  
Sbjct: 139 -LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTT---LERLDISSNKVSDISV 194

Query: 548 QCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKF 607
             L   + +L  L   +N+     P   L+  +L  + L+ N L+     +L + ++L  
Sbjct: 195 --LAKLT-NLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTD 247

Query: 608 LDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTG 667
           LDL NNQIS   P  L  L +L  L L +N++  +   P  G     L  ++L+ N+   
Sbjct: 248 LDLANNQISNLAP--LSGLTKLTELKLGANQISNI--SPLAGL--TALTNLELNENQLED 301

Query: 668 KLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKV 727
             P           + N   L Y               L +Y  +++  +         +
Sbjct: 302 ISP-----------ISNLKNLTY---------------LTLYFNNISDIS-----PVSSL 330

Query: 728 PNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNN 787
              L  +   +N+      +S+ANL  +  LS  +N +    L+ L NLT +  L L++ 
Sbjct: 331 TK-LQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQ 385

Query: 788 KFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGN 821
            ++        +++           L  P    +
Sbjct: 386 AWTNAPVNYKANVSIPNTVKNVTGALIAPATISD 419

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 97.7 bits (244), Expect = 2e-21
 Identities = 72/403 (17%), Positives = 137/403 (33%), Gaps = 80/403 (19%)

Query: 428 LKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGF 487
                      L    +   V +      +   + L      +           ++ DG 
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVSQ----TDLDQVTTLQADRLGI-----------KSIDGV 64

Query: 488 -------TLDLSYNYLQGPLPVPPPQTKHYL-VSNNSLTGKIPFWICNSSNSLEILDLSY 539
                   ++ S N L    P+        + ++NN +    P     +  +L  L L  
Sbjct: 65  EYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPL---ANLTNLTGLTLFN 121

Query: 540 NNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSL 599
           N ++ + P  L N + +L+ L+L  N        + L+  SL  +   + +      + L
Sbjct: 122 NQITDIDP--LKNLT-NLNRLELSSNTISDISALSGLT--SLQQLSFGNQVTD---LKPL 173

Query: 600 VNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIID 659
            N ++L+ LD+ +N++S    S L  L  L  LI  +N++  +            L  + 
Sbjct: 174 ANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGI----LTNLDELS 227

Query: 660 LSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLT-MSNK 718
           L+ N+    + +          + + + L                 L + +  ++ ++  
Sbjct: 228 LNGNQLK-DIGT----------LASLTNLTD---------------LDLANNQISNLAPL 261

Query: 719 GQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTG 778
             +         LT + L +N+     P  +A L  L  L L  N L    +S + NL  
Sbjct: 262 SGLTK-------LTELKLGANQISNISP--LAGLTALTNLELNENQLED--ISPISNLKN 310

Query: 779 LESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGN 821
           L  L L  N  S   P  +  LT L+     NN ++      N
Sbjct: 311 LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLAN 351

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.9 bits (125), Expect = 7e-07
 Identities = 41/229 (17%), Positives = 76/229 (33%), Gaps = 55/229 (24%)

Query: 598 SLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRI 657
           +    +      LG   ++ T       L ++  L          I+  +       L  
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLG----IKSIDGVEYLNNLTQ 72

Query: 658 IDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSN 717
           I+ SNN+ T   P           + N ++L                 + + +  +    
Sbjct: 73  INFSNNQLTDITP-----------LKNLTKLVD---------------ILMNNNQIA--- 103

Query: 718 KGQMMSYDKVPNF-----LTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSC 772
                    +        LTG+ L +N+     P  + NL  L  L L++N++    +S 
Sbjct: 104 --------DITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISA 151

Query: 773 LGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGN 821
           L  LT L+ L   N        + L +LT LE  ++S+N ++       
Sbjct: 152 LSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSDISVLAK 197

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  152 bits (386), Expect = 8e-41
 Identities = 50/312 (16%), Positives = 105/312 (33%), Gaps = 37/312 (11%)

Query: 113 LEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSY 172
            E L    +  +       +    R    + +               +N      +  + 
Sbjct: 14  RENLYFQGSTALRP-YHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIETRTGRAL 68

Query: 173 YNLIE----LKEPNLGNL-------------VKKLTNLKELALGGVTISSPIPHSLANLS 215
               +      +P    L               +L++L+ + +    +   +P ++   +
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFA 127

Query: 216 SLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLD---------CLK 266
            L  L+L+   LR  +P+ + +L +L  L +     L ELP  + + D          L+
Sbjct: 128 GLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186

Query: 267 RLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGE 326
            L + W  +   LPASI NL +L+ L++  +        ++ +  +L  L L        
Sbjct: 187 SLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRN 244

Query: 327 LPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKH 386
            P  FG    L+ L + +C     +P  +  L QL+ L+           L   +     
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS--RLPSLIAQLPA 302

Query: 387 LEHLSLSSNRLS 398
              + +  +  +
Sbjct: 303 NCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  145 bits (367), Expect = 2e-38
 Identities = 59/300 (19%), Positives = 108/300 (36%), Gaps = 25/300 (8%)

Query: 69  NIDCCLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEI 128
           N D   W       N+ +      +   L+   +             L+L        + 
Sbjct: 40  NADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDA-TQPGRVALELRSVPL--PQF 96

Query: 129 PPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVK 188
           P +   LS L ++ + +AG   ++P  + + + L +L L+ N    L  L   ++ +L  
Sbjct: 97  PDQAFRLSHLQHMTIDAAGL-MELPDTMQQFAGLETLTLARN---PLRAL-PASIASL-- 149

Query: 189 KLTNLKELALGGVTISSPIPHSLAN---------LSSLTLLSLSGCELRGRIPSLLGNLT 239
               L+EL++      + +P  LA+         L +L  L L    +R  +P+ + NL 
Sbjct: 150 --NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ 206

Query: 240 KLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELS-LNR 298
            L  L +  N+ L  L  +I +L  L+ LD+         P   G  A L++L L   + 
Sbjct: 207 NLKSLKIR-NSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN 265

Query: 299 FRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNL 358
                P  +   T+L  L L        LP+    L +   + +     +          
Sbjct: 266 LL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  136 bits (344), Expect = 3e-35
 Identities = 57/292 (19%), Positives = 91/292 (31%), Gaps = 34/292 (11%)

Query: 129 PPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLS----------------HNSY 172
                + S    L    +         + +     + D +                    
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRT 64

Query: 173 YNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIP 232
              ++     L +          L L  V +    P     LS L  +++    L   +P
Sbjct: 65  GRALKATADLLEDA--TQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELP 120

Query: 233 SLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGN------- 285
             +     L  L L+  N L  LP SI +L+ L+ L I       ELP  + +       
Sbjct: 121 DTMQQFAGLETLTLA-RNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179

Query: 286 --LASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDIS 343
             L +L+ L L     R   P S+ N   L  L + ++  S  L  +  +L  LE LD+ 
Sbjct: 180 QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLR 237

Query: 344 ECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSN 395
            C      P      A LK L     +    + L + +     LE L L   
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNL--LTLPLDIHRLTQLEKLDLRGC 287

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  120 bits (303), Expect = 6e-30
 Identities = 54/295 (18%), Positives = 96/295 (32%), Gaps = 46/295 (15%)

Query: 208 PHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSF------------------- 248
            H   + S    L   G         +L    +    D +                    
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRT 64

Query: 249 NNLLGELPTSIGNL--DCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHS 306
              L      + +        L++    L  + P     L+ L+ + +       + P +
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDT 122

Query: 307 MGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSL---------RN 357
           M  F  L  L+LA N     LPAS  +L  L  L I  C   +++P  L         + 
Sbjct: 123 MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 358 LAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFN-TS-QKFNFVG 415
           L  L+ L            L   + N ++L+ L + ++ LS    AI +    ++ +   
Sbjct: 182 LVNLQSLRLEWTGIR---SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD--- 235

Query: 416 LRSCN-LNEFPNFLKNQHYLEVLDLS-CNKIHGKVPKWLIEPSMQNFSYLNLSHN 468
           LR C  L  +P     +  L+ L L  C+ +   +P  +    +     L+L   
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIH--RLTQLEKLDLRGC 287

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 99.6 bits (249), Expect = 8e-23
 Identities = 54/347 (15%), Positives = 100/347 (28%), Gaps = 31/347 (8%)

Query: 301 GKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQ 360
           G + H   + +    L    +             +     D +             N   
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNN 57

Query: 361 LKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTS--QKFNFVGLRS 418
            +    +        DL            L L S  L  F    F  S  Q      + +
Sbjct: 58  PQIETRTGRALKATADLLEDA-TQPGRVALELRSVPLPQFPDQAFRLSHLQHMT---IDA 113

Query: 419 CNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPM 478
             L E P+ ++    LE L L+ N +   +P  +   S+     L++     +       
Sbjct: 114 AGLMELPDTMQQFAGLETLTLARNPLR-ALPASIA--SLNRLRELSIRACPELT------ 164

Query: 479 FFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLS 538
             P           +  L           +   +    +   +P  I N  N L+ L + 
Sbjct: 165 ELPEPLASTDASGEHQGLV--------NLQSLRLEWTGIR-SLPASIANLQN-LKSLKIR 214

Query: 539 YNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRS 598
            + LS  L   + +    L  LDL+      + P  F     L  + L D      +P  
Sbjct: 215 NSPLSA-LGPAIHHLP-KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272

Query: 599 LVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIRE 645
           +   + L+ LDL         PS +  L    ++++  +    + + 
Sbjct: 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 96.2 bits (240), Expect = 1e-21
 Identities = 41/378 (10%), Positives = 86/378 (22%), Gaps = 77/378 (20%)

Query: 252 LGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFT 311
           +G       +    + L    +         +         + +       +     N  
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWH----SAWRQANSN 56

Query: 312 RLYWLSLASNDFSGELPASFGNLRS--LEGLDISECKFSSQIPSSLRNLAQLKFLEFSHN 369
                +               +        L++         P     L+ L+ +     
Sbjct: 57  NPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAA 114

Query: 370 NFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLK 429
                 +L   +  F  LE L+L+ N L                           P  + 
Sbjct: 115 GLM---ELPDTMQQFAGLETLTLARNPLR------------------------ALPASIA 147

Query: 430 NQHYLEVLDLS-CNKIH------GKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPR 482
           + + L  L +  C ++                  + N   L L    +          P 
Sbjct: 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-------SLPA 200

Query: 483 NYDGFT----LDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLS 538
           +         L +  + L                        +   I +    LE LDL 
Sbjct: 201 SIANLQNLKSLKIRNSPLS----------------------ALGPAIHHLPK-LEELDLR 237

Query: 539 YNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRS 598
                   P      +  L  L L+      ++P        L  +DL   +   R+P  
Sbjct: 238 GCTALRNYPPIFGGRA-PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296

Query: 599 LVNCSSLKFLDLGNNQIS 616
           +    +   + +  +  +
Sbjct: 297 IAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 91.5 bits (228), Expect = 4e-20
 Identities = 56/352 (15%), Positives = 110/352 (31%), Gaps = 73/352 (20%)

Query: 330 SFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEH 389
              +    E L              L    +    + +  + +          N  + + 
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWR------QANSNNPQI 60

Query: 390 LSLSSNRLSLFTKAIFN-TSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKV 448
            + +   L      + + T      + LRS  L +FP+      +L+ + +    +  ++
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-EL 119

Query: 449 PKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTK 508
           P      +MQ F+ L                        TL L+ N L+           
Sbjct: 120 P-----DTMQQFAGLE-----------------------TLTLARNPLR----------- 140

Query: 509 HYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSD--------HLSIL 560
                       +P  I + +  L  L +        LP+ L +           +L  L
Sbjct: 141 -----------ALPASIASLNR-LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188

Query: 561 DLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFP 620
            L+      S+P +  + ++L  + + ++ L   +  ++ +   L+ LDL        +P
Sbjct: 189 RLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYP 246

Query: 621 SWLGTLRELNVLILKS-NKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPS 671
              G    L  LILK  + L  +   P       +L  +DL       +LPS
Sbjct: 247 PIFGGRAPLKRLILKDCSNLLTL---PLDIHRLTQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 90.4 bits (225), Expect = 1e-19
 Identities = 49/311 (15%), Positives = 86/311 (27%), Gaps = 44/311 (14%)

Query: 513 SNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIP 572
            N         W   +SN+ +I   +   L        D        L+L+        P
Sbjct: 39  YNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPL-PQFP 97

Query: 573 QTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVL 632
                   L  + +    L   +P ++   + L+ L L  N +    P+ + +L  L  L
Sbjct: 98  DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155

Query: 633 ILKS-NKLH------GMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNT 685
            +++  +L                 G   L+ + L        LP+      N       
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQN------- 207

Query: 686 SELRYMEGMIYPFALVSYAALGIYDYSLTM--SNKGQMMSYDKVPNFLTGVILSSNRFDG 743
             L+                L I +  L+        +         L  + L       
Sbjct: 208 --LKS---------------LKIRNSPLSALGPAIHHLPK-------LEELDLRGCTALR 243

Query: 744 EIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFL 803
             P        L+ L L + S    +   +  LT LE LDL       ++P  +  L   
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303

Query: 804 EFFNVSNNNLT 814
               V  +   
Sbjct: 304 CIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.8 bits (208), Expect = 2e-17
 Identities = 39/284 (13%), Positives = 76/284 (26%), Gaps = 58/284 (20%)

Query: 531 SLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTF--LSGRSLMMIDLSD 588
                D +  + +          S++  I          +        +    + ++L  
Sbjct: 37  RHYNADRNRWHSAWRQAN-----SNNPQIETRTGRAL-KATADLLEDATQPGRVALELRS 90

Query: 589 NLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNT 648
             L  + P      S L+ + +    +    P  +     L  L L  N L  +   P +
Sbjct: 91  VPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRAL---PAS 145

Query: 649 GCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGI 708
                 LR + +       +LP        + +      L+ +                 
Sbjct: 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR---------------- 189

Query: 709 YDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGH 768
                                      L        +P SIANL+ L+ L + N+ L   
Sbjct: 190 ---------------------------LEWTGIR-SLPASIANLQNLKSLKIRNSPLS-A 220

Query: 769 ILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNN 812
           +   + +L  LE LDL         P        L+   + + +
Sbjct: 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 73.8 bits (182), Expect = 4e-14
 Identities = 30/153 (19%), Positives = 55/153 (35%), Gaps = 12/153 (7%)

Query: 89  KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGF 148
            L L  + ++      + +  L +L+ L +  +    S + P I +L +L  L+L     
Sbjct: 187 SLRLEWTGIRSL---PASIANLQNLKSLKIRNSPL--SALGPAIHHLPKLEELDLRGCTA 241

Query: 149 FGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIP 208
               P      + L  L L   S  NL+ L   ++  L    T L++L L G    S +P
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCS--NLLTL-PLDIHRL----TQLEKLDLRGCVNLSRLP 294

Query: 209 HSLANLSSLTLLSLSGCELRGRIPSLLGNLTKL 241
             +A L +  ++ +                   
Sbjct: 295 SLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 54.6 bits (132), Expect = 6e-08
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 3/83 (3%)

Query: 736 LSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQ 795
           L S     + P     L  LQ +++    L   +   +    GLE+L L+ N     +P 
Sbjct: 88  LRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPA 144

Query: 796 QLVDLTFLEFFNVSNNNLTGPIP 818
            +  L  L   ++        +P
Sbjct: 145 SIASLNRLRELSIRACPELTELP 167

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 54.6 bits (132), Expect = 6e-08
 Identities = 32/247 (12%), Positives = 61/247 (24%), Gaps = 50/247 (20%)

Query: 579 RSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNK 638
                +    +         L         D      +    +         +       
Sbjct: 12  SGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN----SNNPQIETRTGRA 67

Query: 639 LHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPF 698
           L             P    ++L +     + P + F+  +         L++        
Sbjct: 68  LKATADLLED-ATQPGRVALELRSVPLP-QFPDQAFRLSH---------LQH-------- 108

Query: 699 ALVSYAALGIYDYSLTM--SNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQ 756
                  + I    L        Q          L  + L+ N     +P SIA+L  L+
Sbjct: 109 -------MTIDAAGLMELPDTMQQFAG-------LETLTLARNPLR-ALPASIASLNRLR 153

Query: 757 VLSLANNSL---------HGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFN 807
            LS+                        L  L+SL L        +P  + +L  L+   
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLK 212

Query: 808 VSNNNLT 814
           + N+ L+
Sbjct: 213 IRNSPLS 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 9/58 (15%), Positives = 18/58 (31%)

Query: 744 EIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLT 801
            +P  I  L  L+ L L        + S +  L     + +  +  +     + V   
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  151 bits (384), Expect = 2e-39
 Identities = 97/535 (18%), Positives = 184/535 (34%), Gaps = 91/535 (17%)

Query: 108 FKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDL 167
                L+      +    +E+P E  N+   +    + + +    P    E   +    L
Sbjct: 8   VSNTFLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 168 SHNSYYNLIELK--EPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGC 225
                    EL+     L +L +   +L+ L     +++  +P    +L SL + + +  
Sbjct: 66  RDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLK 124

Query: 226 ELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGN 285
            L      L   L    YL +S N  L +LP  + N   LK +D+  N L  +LP    +
Sbjct: 125 AL----SDLPPLLE---YLGVSNNQ-LEKLP-ELQNSSFLKIIDVDNNSLK-KLPDLPPS 174

Query: 286 LASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISEC 345
              LE +    N+   +    + N   L  +   +N    +LP    +L S   +     
Sbjct: 175 ---LEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLK-KLPDLPLSLES---IVAGNN 225

Query: 346 KFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIF 405
                    L+NL  L  +   +N       L     +   LE L++  N L+   +   
Sbjct: 226 ILEE--LPELQNLPFLTTIYADNNLLK---TLPDLPPS---LEALNVRDNYLTDLPELPQ 277

Query: 406 NTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNL 465
           + +     + +     +       N   L  L+ S N+I        +     +   LN+
Sbjct: 278 SLTF----LDVSENIFSGLSELPPN---LYYLNASSNEIRS------LCDLPPSLEELNV 324

Query: 466 SHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWI 525
           S+N LI                            LP  PP+ +  + S N L  ++P   
Sbjct: 325 SNNKLIE---------------------------LPALPPRLERLIASFNHLA-EVPELP 356

Query: 526 CNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMID 585
            N    L+ L + YN L    P   ++      + DL+ N     +P+     ++L  + 
Sbjct: 357 QN----LKQLHVEYNPLRE-FPDIPES------VEDLRMNSHLAEVPELP---QNLKQLH 402

Query: 586 LSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLH 640
           +  N L+   P       S++ L + + ++   +     T  +L   + + +  H
Sbjct: 403 VETNPLR-EFPDIP---ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  136 bits (345), Expect = 2e-34
 Identities = 93/490 (18%), Positives = 156/490 (31%), Gaps = 103/490 (21%)

Query: 190 LTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNL----------- 238
            T L+E       ++  +P    N+ S T    +  E     P   G             
Sbjct: 10  NTFLQEPLRHSSNLTE-MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 239 --TKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSL 296
              +   L+L+ N  L  LP    +L   + L  S N L+ ELP    +L SL     +L
Sbjct: 69  LDRQAHELELN-NLGLSSLPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNL 123

Query: 297 NRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLR 356
                  P        L +L +++N    +LP    N   L+ +D+        +P    
Sbjct: 124 KALSDLPPL-------LEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLKK-LPDLPP 173

Query: 357 NLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGL 416
           +L   +F+   +N      +L     N   L  +   +N L        +       +  
Sbjct: 174 SL---EFIAAGNNQLEELPEL----QNLPFLTAIYADNNSLKKLPDLPLSLES----IVA 222

Query: 417 RSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQH 476
            +  L E P  L+N  +L  +    N +        +     +   LN+  N+L      
Sbjct: 223 GNNILEELPE-LQNLPFLTTIYADNNLLKT------LPDLPPSLEALNVRDNYLTDL--- 272

Query: 477 PMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILD 536
           P           LD+S N   G L   PP   +   S+N +       +C+   SLE L+
Sbjct: 273 PELPQSLT---FLDVSENIFSG-LSELPPNLYYLNASSNEIRS-----LCDLPPSLEELN 323

Query: 537 LSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIP 596
           +S N L  L P         L  L    N                             +P
Sbjct: 324 VSNNKLIEL-PALPPR----LERLIASFNHLA-------------------------EVP 353

Query: 597 RSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELR 656
                  +LK L +  N +   FP    ++ +L +    ++ L  +   P        L+
Sbjct: 354 ELP---QNLKQLHVEYNPLR-EFPDIPESVEDLRM----NSHLAEVPELP------QNLK 399

Query: 657 IIDLSNNRFT 666
            + +  N   
Sbjct: 400 QLHVETNPLR 409

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  129 bits (327), Expect = 4e-32
 Identities = 88/555 (15%), Positives = 178/555 (32%), Gaps = 111/555 (20%)

Query: 237 NLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSL 296
           + T L       +NL  E+P    N+        +W+E     P   G    +    L  
Sbjct: 9   SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 297 NRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLR 356
              R           + + L L +   S  LP    +L SL     S    +  +P   +
Sbjct: 68  CLDR-----------QAHELELNNLGLS-SLPELPPHLESL---VASCNSLTE-LPELPQ 111

Query: 357 NLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGL 416
           +L  L     +    S              LE+L +S+N+L    +     S     + +
Sbjct: 112 SLKSLLVDNNNLKALSDLPP---------LLEYLGVSNNQLEKLPE--LQNSSFLKIIDV 160

Query: 417 RSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQH 476
            + +L + P+   +   LE +    N++  ++P+     ++   + +   +N L      
Sbjct: 161 DNNSLKKLPDLPPS---LEFIAAGNNQLE-ELPEL---QNLPFLTAIYADNNSLKKLPDL 213

Query: 477 PMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYL-VSNNSLTGKIPFWICNSSNSLEIL 535
           P+         ++    N L+    +        +   NN L   +P    +    LE L
Sbjct: 214 PLSLE------SIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPDLPPS----LEAL 262

Query: 536 DLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRI 595
           ++  N L+ L P+   +    L+ LD+  N F   + +      +L  ++ S N ++  +
Sbjct: 263 NVRDNYLTDL-PELPQS----LTFLDVSENIFS-GLSELP---PNLYYLNASSNEIR-SL 312

Query: 596 PRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPEL 655
                   SL+ L++ NN++    P+    L  L       N L  +   P        L
Sbjct: 313 CDLP---PSLEELNVSNNKLI-ELPALPPRLERLI---ASFNHLAEVPELP------QNL 359

Query: 656 RIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTM 715
           + + +  N    + P                    +E                    L M
Sbjct: 360 KQLHVEYNPLR-EFP---------------DIPESVE-------------------DLRM 384

Query: 716 SNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGN 775
           ++   +    ++P  L  + + +N    E P    +   ++ L + +  +          
Sbjct: 385 NS--HLAEVPELPQNLKQLHVETNPLR-EFPDIPES---VEDLRMNSERVVDPYEFAHET 438

Query: 776 LTGLESLDLSNNKFS 790
              LE     ++   
Sbjct: 439 TDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 88.9 bits (221), Expect = 1e-18
 Identities = 91/512 (17%), Positives = 158/512 (30%), Gaps = 145/512 (28%)

Query: 303 TPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLK 362
            P ++ N T L      S++ + E+P    N++S      +  ++    P       ++ 
Sbjct: 4   NPRNVSN-TFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 363 FLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLN 422
                                 +    L L++  LS                        
Sbjct: 62  VSRLRDCLD-------------RQAHELELNNLGLS------------------------ 84

Query: 423 EFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPR 482
             P    +   LE L  SCN +  ++P+     S+++    N +                
Sbjct: 85  SLPELPPH---LESLVASCNSLT-ELPELP--QSLKSLLVDNNNLK-------------- 124

Query: 483 NYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNL 542
                            L   PP  ++  VSNN L  K+P  + NSS  L+I+D+  N+L
Sbjct: 125 ----------------ALSDLPPLLEYLGVSNNQLE-KLPE-LQNSSF-LKIIDVDNNSL 165

Query: 543 SGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNC 602
             L P    +    L  +   +N+    +P                          L N 
Sbjct: 166 KKL-PDLPPS----LEFIAAGNNQLE-ELP-------------------------ELQNL 194

Query: 603 SSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSN 662
             L  +   NN +    P    +L  +      +N L     E       P L  I   N
Sbjct: 195 PFLTAIYADNNSLK-KLPDLPLSLESIV---AGNNILE----ELPELQNLPFLTTIYADN 246

Query: 663 NRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMM 722
           N     LP        +++ +N  +    +    P +L            L +S      
Sbjct: 247 NLLK-TLPDL----PPSLEALNVRDNYLTDLPELPQSL----------TFLDVSEN-IFS 290

Query: 723 SYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESL 782
              ++P  L  +  SSN     I +       L+ L+++NN L   + +       LE L
Sbjct: 291 GLSELPPNLYYLNASSNE----IRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERL 342

Query: 783 DLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLT 814
             S N  + ++P+   +L  L   +V  N L 
Sbjct: 343 IASFNHLA-EVPELPQNLKQL---HVEYNPLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 70.8 bits (174), Expect = 8e-13
 Identities = 59/324 (18%), Positives = 104/324 (32%), Gaps = 74/324 (22%)

Query: 508 KHYLVSNNSLTGKIPFWICN------------SSNSLEILDLSYNNLSGLLPQCLDNFSD 555
             Y  + +      P                        L+L+   LS L P+   +   
Sbjct: 37  TEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL-PELPPH--- 92

Query: 556 HLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQI 615
            L  L    N     +P+   S +SL++ + +   L    P        L++L + NNQ+
Sbjct: 93  -LESLVASCNSL-TELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQL 143

Query: 616 SGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQ 675
               P  L     L ++ + +N L  +   P      P L  I   NN+   +LP     
Sbjct: 144 E-KLPE-LQNSSFLKIIDVDNNSLKKLPDLP------PSLEFIAAGNNQLE-ELPE---- 190

Query: 676 CWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVI 735
                 + N   L                        +   N   +     +P  L  ++
Sbjct: 191 ------LQNLPFLTA----------------------IYADNN-SLKKLPDLPLSLESIV 221

Query: 736 LSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQ 795
             +N    E    + NL  L  +   NN L   +     +L   E+L++ +N  +  +P+
Sbjct: 222 AGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSL---EALNVRDNYLT-DLPE 274

Query: 796 QLVDLTFLEFFNVSNNNLTGPIPQ 819
               LTFL+      + L+   P 
Sbjct: 275 LPQSLTFLDVSENIFSGLSELPPN 298

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 66.9 bits (164), Expect = 1e-11
 Identities = 52/316 (16%), Positives = 104/316 (32%), Gaps = 61/316 (19%)

Query: 511 LVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGS 570
           L  +++LT ++P    N  +       +++      P       + +++  L+       
Sbjct: 17  LRHSSNLT-EMPVEAENVKS-KTEYYNAWSEWERNAPPGNGEQRE-MAVSRLRDCLD--- 70

Query: 571 IPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELN 630
                   R    ++L++  L   +P        L+ L    N ++   P    +L+ L 
Sbjct: 71  --------RQAHELELNNLGLS-SLPELP---PHLESLVASCNSLT-ELPELPQSLKSLL 117

Query: 631 VLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSE--L 688
           V       L  +          P L  + +SNN+   KLP    Q  + +++++     L
Sbjct: 118 VDNNNLKALSDLP---------PLLEYLGVSNNQLE-KLPE--LQNSSFLKIIDVDNNSL 165

Query: 689 RYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNF-----LTGVILSSNRFDG 743
           + +     P    S   +   +  L            ++P       LT +   +N    
Sbjct: 166 KKL-----PDLPPSLEFIAAGNNQLE-----------ELPELQNLPFLTAIYADNNSLK- 208

Query: 744 EIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFL 803
           ++P    +L   + +   NN L    L  L NL  L ++   NN     +P     L  L
Sbjct: 209 KLPDLPLSL---ESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEAL 262

Query: 804 EFFNVSNNNLTGPIPQ 819
              +    +L      
Sbjct: 263 NVRDNYLTDLPELPQS 278

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 62.7 bits (153), Expect = 3e-10
 Identities = 49/295 (16%), Positives = 89/295 (30%), Gaps = 77/295 (26%)

Query: 527 NSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDL 586
            S+  L+      +NL+ + P   +N     +      +++  + P      R + +  L
Sbjct: 8   VSNTFLQEPLRHSSNLTEM-PVEAENVK-SKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 587 SDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREP 646
            D L +               L+L N  +S + P     L  L       N L  +   P
Sbjct: 66  RDCLDR-----------QAHELELNNLGLS-SLPELPPHLESLV---ASCNSLTEL---P 107

Query: 647 NTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAAL 706
                   L + + +    +   P                 L Y               L
Sbjct: 108 ELPQSLKSLLVDNNNLKALSDLPPL----------------LEY---------------L 136

Query: 707 GIYDYSLTMSNKGQMMSYDKVPNF-----LTGVILSSNRFDGEIPTSIANLKGLQVLSLA 761
           G+ +  L            K+P       L  + + +N    ++P    +L   + ++  
Sbjct: 137 GVSNNQLE-----------KLPELQNSSFLKIIDVDNNSLK-KLPDLPPSL---EFIAAG 181

Query: 762 NNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGP 816
           NN L    L  L NL  L ++   NN    ++P   + L  +      NN L   
Sbjct: 182 NNQLE--ELPELQNLPFLTAIYADNNSLK-KLPDLPLSLESI---VAGNNILEEL 230

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  143 bits (362), Expect = 2e-36
 Identities = 65/471 (13%), Positives = 145/471 (30%), Gaps = 57/471 (12%)

Query: 207 IPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLK 266
           I     N +   +  ++   L+  + SL  +   +  LDLS N L       +     L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 267 RLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGE 326
            L++S N L       + +L++L  L+L+ N  +      +     +  L  A+N+ S  
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-R 113

Query: 327 LPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKH 386
           +  S    +  + + ++  K +          +++++L+   N     ++      +   
Sbjct: 114 VSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-VNFAELAASSDT 170

Query: 387 LEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHG 446
           LEHL+L  N +      +                             L+ LDLS NK+  
Sbjct: 171 LEHLNLQYNFIYDVKGQVVFAK-------------------------LKTLDLSSNKLAF 205

Query: 447 KVPKWLIEPSMQNFS---YLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQ-GPLPV 502
                 + P  Q+ +   +++L +N L+           + +    DL  N    G L  
Sbjct: 206 ------MGPEFQSAAGVTWISLRNNKLVLI---EKALRFSQNLEHFDLRGNGFHCGTLRD 256

Query: 503 PPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNF----SDHLS 558
              + +           K+            +          L     D          +
Sbjct: 257 FFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHA 316

Query: 559 ILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGT 618
           +L  Q ++    +     +      ID      +  I +  +   +   L+     +   
Sbjct: 317 LLSGQGSET-ERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQ 375

Query: 619 FPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKL 669
             +      EL+  + ++     +            L+++     R+    
Sbjct: 376 VSNGRRAHAELDGTLQQAVGQIELQHATEE---QSPLQLLRAIVKRYEEMY 423

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  131 bits (331), Expect = 2e-32
 Identities = 77/497 (15%), Positives = 147/497 (29%), Gaps = 72/497 (14%)

Query: 152 IPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSL 211
           I       +      ++ +S    +        +L +   N+KEL L G  +S      L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALA-------SLRQSAWNVKELDLSGNPLSQISAADL 54

Query: 212 ANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDIS 271
           A  + L LL+LS   L       L +L+ L  LDL+ N +       +     ++ L  +
Sbjct: 55  APFTKLELLNLSSNVLYE-TLD-LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAA 107

Query: 272 WNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSG-ELPAS 330
            N +S  +  S       + + L+ N+         G  +R+ +L L  N+         
Sbjct: 108 NNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 331 FGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHL 390
             +  +LE L++        +   +   A+LK L+ S N  +    +     +   +  +
Sbjct: 165 AASSDTLEHLNLQYNFIYD-VKGQV-VFAKLKTLDLSSNKLA---FMGPEFQSAAGVTWI 219

Query: 391 SLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPK 450
           SL +N+L L  KA+  +                          LE  DL  N  H    +
Sbjct: 220 SLRNNKLVLIEKALRFSQN------------------------LEHFDLRGNGFHCGTLR 255

Query: 451 WLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHY 510
                + +  +    +   L G  +     P               +  LP P       
Sbjct: 256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL-----GHYGAYCCE-DLPAPFADRLIA 309

Query: 511 LVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGS 570
           L                      +L    +    L  +  +        +D    ++   
Sbjct: 310 L----------------KRKEHALLSGQGSETERLECERENQ--ARQREIDALKEQYRTV 351

Query: 571 IPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELN 630
           I Q  L  ++ + ++     L  ++       + L                       L 
Sbjct: 352 IDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG-QIELQHATEEQSPLQ 410

Query: 631 VLILKSNKLHGMIREPN 647
           +L     +   M  E  
Sbjct: 411 LLRAIVKRYEEMYVEQQ 427

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  130 bits (329), Expect = 4e-32
 Identities = 62/386 (16%), Positives = 133/386 (34%), Gaps = 31/386 (8%)

Query: 90  LDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEII-NLSRLSYLNLSSAGF 148
             +++S L+  + S        +++ LDL+ N    S+I    +   ++L  LNLSS   
Sbjct: 15  EKVTDSSLKQALASL--RQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVL 70

Query: 149 FGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIP 208
                 ++  LS L +LDL++N    + EL             +++ L      IS  + 
Sbjct: 71  --YETLDLESLSTLRTLDLNNN---YVQELLV---------GPSIETLHAANNNISR-VS 115

Query: 209 HSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLG-ELPTSIGNLDCLKR 267
              +       + L+  ++        G  +++ YLDL  N +          + D L+ 
Sbjct: 116 --CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 268 LDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGEL 327
           L++ +N +  ++   +   A L+ L+LS N+          +   + W+SL +N     +
Sbjct: 174 LNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LI 229

Query: 328 PASFGNLRSLEGLDISECKFSS-QIPSSLRNLAQLKFLEFSHNNF-SGPIDLDMFLVNFK 385
             +    ++LE  D+    F    +        +++ +        +G  + +  +    
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 386 HLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIH 445
           H               + I    ++   +  +           +NQ     +D    +  
Sbjct: 290 HYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR 349

Query: 446 GKVPKWLIEPSMQNFSYLNLSHNFLI 471
             V   +     Q    L      L 
Sbjct: 350 -TVIDQVTLR-KQAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  109 bits (273), Expect = 4e-25
 Identities = 64/450 (14%), Positives = 129/450 (28%), Gaps = 47/450 (10%)

Query: 383 NFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCN 442
           N    +   ++ + L     ++                        ++   ++ LDLS N
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLR-----------------------QSAWNVKELDLSGN 44

Query: 443 KIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPV 502
            +       L          LNLS N L       +         TLDL+ NY+Q  L  
Sbjct: 45  PLSQISAADL--APFTKLELLNLSSNVL----YETLDLESLSTLRTLDLNNNYVQE-LL- 96

Query: 503 PPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDL 562
             P  +    +NN+++ ++     +     + + L+ N ++ L        S  +  LDL
Sbjct: 97  VGPSIETLHAANNNIS-RVSC---SRGQGKKNIYLANNKITMLRDLDEGCRS-RVQYLDL 151

Query: 563 QHNKFCGSIPQTFLSG-RSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPS 621
           + N+          +   +L  ++L  N +   +    V  + LK LDL +N+++     
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLA-FMGP 208

Query: 622 WLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQ 681
              +   +  + L++NKL  +            L   DL  N F       +F     +Q
Sbjct: 209 EFQSAAGVTWISLRNNKLVLI---EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265

Query: 682 VVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRF 741
            V    ++ + G                 Y               +      ++      
Sbjct: 266 TVAKQTVKKLTGQNEEE-CTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSE 324

Query: 742 DGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIP---QQLV 798
              +     N    + +          I           +L+        Q+    +   
Sbjct: 325 TERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHA 384

Query: 799 DLTFLEFFNVSNNNLTGPIPQGNQFPTFDK 828
           +L       V    L     + +       
Sbjct: 385 ELDGTLQQAVGQIELQHATEEQSPLQLLRA 414

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 86.1 bits (213), Expect = 1e-17
 Identities = 45/316 (14%), Positives = 91/316 (28%), Gaps = 23/316 (7%)

Query: 89  KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGF 148
            + L+N+ +    +          +++LDL  N            +   L +LNL    F
Sbjct: 124 NIYLANNKITMLRDLD--EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-F 180

Query: 149 FGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIP 208
              +  +++  + L +LDLS N    L  +  P   +       +  ++L    +   I 
Sbjct: 181 IYDVKGQVV-FAKLKTLDLSSN---KLAFM-GPEFQS----AAGVTWISLRNNKLVL-IE 230

Query: 209 HSLANLSSLTLLSLSGCELR-GRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKR 267
            +L    +L    L G     G +        ++  +       L               
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE--ECTVPTL 288

Query: 268 LDISWNELSGELPASIGNLASLEQLELSLNRFRG----KTPHSMGNFTRLYWLSLASNDF 323
                             L +L++ E +L   +G    +      N  R   +      +
Sbjct: 289 GHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQY 348

Query: 324 SGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVN 383
              +       ++   L+  +     Q+ +  R  A+L           G I+L      
Sbjct: 349 RTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAV---GQIELQHATEE 405

Query: 384 FKHLEHLSLSSNRLSL 399
              L+ L     R   
Sbjct: 406 QSPLQLLRAIVKRYEE 421

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 81.8 bits (202), Expect = 2e-16
 Identities = 43/252 (17%), Positives = 91/252 (36%), Gaps = 32/252 (12%)

Query: 570 SIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLREL 629
           +I +   +G    +  ++D+ L+  +     +  ++K LDL  N +S    + L    +L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 630 NVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELR 689
            +L L SN     + E         LR +DL+NN                 +++    + 
Sbjct: 61  ELLNLSSNV----LYETLDLESLSTLRTLDLNNNYVQ--------------ELLVGPSIE 102

Query: 690 YME------GMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDG 743
            +         +          + + +  +TM          +    +  + L  N  D 
Sbjct: 103 TLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSR----VQYLDLKLNEIDT 158

Query: 744 -EIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTF 802
                  A+   L+ L+L  N +  + +        L++LDLS+NK +  +  +      
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFI--YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAG 215

Query: 803 LEFFNVSNNNLT 814
           + + ++ NN L 
Sbjct: 216 VTWISLRNNKLV 227

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 78.0 bits (192), Expect = 4e-15
 Identities = 55/410 (13%), Positives = 105/410 (25%), Gaps = 57/410 (13%)

Query: 430 NQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTL 489
           N +  ++  ++ + +  +    L +    N   L+LS N L                  L
Sbjct: 8   NGNRYKIEKVTDSSLK-QALASLRQS-AWNVKELDLSGNPLSQI--SAADLAPFTKLELL 63

Query: 490 DLSYNYLQGPLPVPPPQTKHYL-VSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQ 548
           +LS N L   L +    T   L ++NN +  ++         S+E L  + NN+S +   
Sbjct: 64  NLSSNVLYETLDLESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHAANNNISRVSCS 117

Query: 549 CLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQG-RIPRSLVNCSSLKF 607
                      + L +NK              +  +DL  N +          +  +L+ 
Sbjct: 118 RGQG----KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 608 LDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTG 667
           L+L  N I       +    +L  L L SNKL  M            +  I L NN+   
Sbjct: 174 LNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAFM---GPEFQSAAGVTWISLRNNKLV- 227

Query: 668 KLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKV 727
            +            +  +  L +                 +              S    
Sbjct: 228 LIEK---------ALRFSQNLEH---------------FDLRGNGFHCGTLRDFFS---- 259

Query: 728 PNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNN 787
                   ++          +        +                  L  L+  + +  
Sbjct: 260 -KNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALL 318

Query: 788 KFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGL 837
              G   ++L           +            Q+ T            
Sbjct: 319 SGQGSETERLECERE------NQARQREIDALKEQYRTVIDQVTLRKQAK 362

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.2 bits (151), Expect = 4e-10
 Identities = 39/276 (14%), Positives = 74/276 (26%), Gaps = 12/276 (4%)

Query: 89  KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGF 148
            + L N+ L         L    +LE  DL  N F C  +        R+  +   +   
Sbjct: 218 WISLRNNKLVLI---EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT--- 271

Query: 149 FGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVK-KLTNLKELALGGVTISSPI 207
             ++  +  E        L H   Y   +L  P    L+  K      L+  G      +
Sbjct: 272 VKKLTGQNEE--ECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETER-L 328

Query: 208 PHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKR 267
                N +    +     + R  I  +       + L+     L  ++         L  
Sbjct: 329 ECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDG 388

Query: 268 LDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGEL 327
                     EL  +    + L+ L   + R+                          +L
Sbjct: 389 TLQQAVGQ-IELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQL 447

Query: 328 PASFGNLRSLEG-LDISECKFSSQIPSSLRNLAQLK 362
                 L+ L G  D++    ++ +   +     L 
Sbjct: 448 AEENARLKKLNGEADLALASANATLQELVVREQNLA 483

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.5 bits (131), Expect = 1e-07
 Identities = 19/77 (24%), Positives = 32/77 (41%)

Query: 745 IPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLE 804
           I     N    ++  + ++SL   + S   +   ++ LDLS N  S      L   T LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 805 FFNVSNNNLTGPIPQGN 821
             N+S+N L   +   +
Sbjct: 62  LLNLSSNVLYETLDLES 78

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  139 bits (353), Expect = 3e-36
 Identities = 85/373 (22%), Positives = 145/373 (38%), Gaps = 42/373 (11%)

Query: 101 INSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELS 160
           IN       L       L       +++      L  ++ L ++           I  L+
Sbjct: 12  INQIFPDADLAEGIRAVLQKASV--TDVVT-QEELESITKLVVAGEKV--ASIQGIEYLT 66

Query: 161 NLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLL 220
           NL  L+L+ N   ++  L           L  L  L +G   I+      L NL++L  L
Sbjct: 67  NLEYLNLNGNQITDISPL---------SNLVKLTNLYIGTNKITDISA--LQNLTNLREL 115

Query: 221 SLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELP 280
            L+   +    P  L NLTK+  L+L  N+ L    + + N+  L  L ++ +++     
Sbjct: 116 YLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKD--V 170

Query: 281 ASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGL 340
             I NL  L  L L+ N+    +P  + + T L++ +   N  +   P    N+  L  L
Sbjct: 171 TPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSL 226

Query: 341 DISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLF 400
            I   K +    S L NL+QL +LE   N  S    +     +   L+ L++ SN++S  
Sbjct: 227 KIGNNKITD--LSPLANLSQLTWLEIGTNQISDINAVK----DLTKLKMLNVGSNQISDI 280

Query: 401 TKAIFNTSQKFNFVGLRSCNL-NEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEP--SM 457
           +  + N   + N + L +  L NE    +     L  L LS N I        I P  S+
Sbjct: 281 S--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD------IRPLASL 332

Query: 458 QNFSYLNLSHNFL 470
                 + ++  +
Sbjct: 333 SKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  139 bits (352), Expect = 4e-36
 Identities = 68/310 (21%), Positives = 124/310 (40%), Gaps = 33/310 (10%)

Query: 89  KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGF 148
            L+L+ +     I   S L  LV L  L +  N          + NL+ L  L L+    
Sbjct: 70  YLNLNGN----QITDISPLSNLVKLTNLYIGTNKI---TDISALQNLTNLRELYLNEDNI 122

Query: 149 FGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIP 208
                S +  L+ + SL+L  N   + +    P     +  +T L  L +    +    P
Sbjct: 123 SD--ISPLANLTKMYSLNLGAN---HNLSDLSP-----LSNMTGLNYLTVTESKVKDVTP 172

Query: 209 HSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRL 268
             +ANL+ L  LSL+  ++    P  L +LT L Y     N +     T + N+  L  L
Sbjct: 173 --IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD--ITPVANMTRLNSL 226

Query: 269 DISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELP 328
            I  N+++    + + NL+ L  LE+  N+      +++ + T+L  L++ SN  S    
Sbjct: 227 KIGNNKITD--LSPLANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD--I 280

Query: 329 ASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLE 388
           +   NL  L  L ++  +  ++    +  L  L  L  S N+ +    L     +   ++
Sbjct: 281 SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA----SLSKMD 336

Query: 389 HLSLSSNRLS 398
               ++  + 
Sbjct: 337 SADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  134 bits (341), Expect = 1e-34
 Identities = 73/415 (17%), Positives = 148/415 (35%), Gaps = 82/415 (19%)

Query: 162 LVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLS 221
             +L         +              L       L   +++  +      L S+T L 
Sbjct: 2   AATLATLPAPINQIFPDA---------DLAEGIRAVLQKASVTDVVT--QEELESITKLV 50

Query: 222 LSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPA 281
           ++G ++   I  +   LT L YL+L+ N +     + + NL  L  L I  N+++    +
Sbjct: 51  VAGEKVAS-IQGI-EYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKITD--IS 104

Query: 282 SIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLD 341
           ++ NL +L +L L+ +     +P  + N T++Y L+L +N       +   N+  L  L 
Sbjct: 105 ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLT 161

Query: 342 ISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFT 401
           ++E K      + + NL  L  L  ++N       L     +   L + +   N+++   
Sbjct: 162 VTESKVKD--VTPIANLTDLYSLSLNYNQIEDISPLA----SLTSLHYFTAYVNQIT--- 212

Query: 402 KAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEP--SMQN 459
                             ++    N +     L  L +  NKI        + P  ++  
Sbjct: 213 ------------------DITPVAN-MTR---LNSLKIGNNKITD------LSPLANLSQ 244

Query: 460 FSYLNLSHNFLIGFYQHPMFFPRNYDGF-------TLDLSYNYLQGPLPVPPPQTKHYL- 511
            ++L +  N +              +          L++  N +     +      + L 
Sbjct: 245 LTWLEIGTNQISDI-----------NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLF 293

Query: 512 VSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNK 566
           ++NN L  +    I   +N L  L LS N+++ + P  L + S  +   D  +  
Sbjct: 294 LNNNQLGNEDMEVIGGLTN-LTTLFLSQNHITDIRP--LASLS-KMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  124 bits (313), Expect = 6e-31
 Identities = 80/452 (17%), Positives = 146/452 (32%), Gaps = 109/452 (24%)

Query: 217 LTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELS 276
              L+     +    P    +L + +   L   ++   +      L+ + +L ++  +++
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 277 GELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRS 336
             +   I  L +LE L L+ N+    +P  + N  +L  L + +N  +    ++  NL +
Sbjct: 58  -SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTN 111

Query: 337 LEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNR 396
           L  L ++E   S    S L NL ++  L    N+    +     L N   L +L+++ ++
Sbjct: 112 LRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLS---PLSNMTGLNYLTVTESK 166

Query: 397 LSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEP- 455
                                   + +      N   L  L L+ N+I        I P 
Sbjct: 167 ------------------------VKDVTPI-ANLTDLYSLSLNYNQIED------ISPL 195

Query: 456 -SMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSN 514
            S+ +  Y                                                    
Sbjct: 196 ASLTSLHYFTAY-----------------------------------------------V 208

Query: 515 NSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQT 574
           N +T   P     +   L  L +  N ++ L P  L N S  L+ L++  N+   S    
Sbjct: 209 NQITDITPV---ANMTRLNSLKIGNNKITDLSP--LANLS-QLTWLEIGTNQI--SDINA 260

Query: 575 FLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLIL 634
                 L M+++  N +       L N S L  L L NNQ+       +G L  L  L L
Sbjct: 261 VKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318

Query: 635 KSNKLHGMIREPNTGCGFPELRIIDLSNNRFT 666
             N     I +        ++   D +N    
Sbjct: 319 SQNH----ITDIRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 97.6 bits (244), Expect = 4e-22
 Identities = 64/333 (19%), Positives = 124/333 (37%), Gaps = 54/333 (16%)

Query: 488 TLDLSYNYLQGPLPVPPPQTKHYL-VSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLL 546
            L ++   +     +       YL ++ N +T   P    ++   L  L +  N ++ + 
Sbjct: 48  KLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPL---SNLVKLTNLYIGTNKITDIS 104

Query: 547 PQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLK 606
              L N + +L  L L  +      P   L+   +  ++L  N         L N + L 
Sbjct: 105 A--LQNLT-NLRELYLNEDNISDISPLANLT--KMYSLNLGANHNLS-DLSPLSNMTGLN 158

Query: 607 FLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFT 666
           +L +  +++    P  +  L +L  L L  N+    I + +       L       N+ T
Sbjct: 159 YLTVTESKVKDVTP--IANLTDLYSLSLNYNQ----IEDISPLASLTSLHYFTAYVNQIT 212

Query: 667 GKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLT-MSNKGQMMSYD 725
              P           V N + L                 L I +  +T +S    +    
Sbjct: 213 DITP-----------VANMTRLNS---------------LKIGNNKITDLSPLANLSQ-- 244

Query: 726 KVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLS 785
                LT + + +N+       ++ +L  L++L++ +N +    +S L NL+ L SL L+
Sbjct: 245 -----LTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLN 295

Query: 786 NNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIP 818
           NN+   +  + +  LT L    +S N++T   P
Sbjct: 296 NNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 97.6 bits (244), Expect = 6e-22
 Identities = 65/365 (17%), Positives = 124/365 (33%), Gaps = 81/365 (22%)

Query: 309 NFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSH 368
           +        L     +  +      L S+  L ++  K +S     +  L  L++L  + 
Sbjct: 20  DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNG 75

Query: 369 NNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFL 428
           N  +    L     N   L +L + +N+++                     +++   N L
Sbjct: 76  NQITDISPLS----NLVKLTNLYIGTNKIT---------------------DISALQN-L 109

Query: 429 KNQHYLEVLDLSCNKIHGKVPKWLIEP--SMQNFSYLNLSHNFLIGFYQHPMFFPRNYDG 486
            N   L  L L+ + I        I P  ++     LNL  N  +               
Sbjct: 110 TN---LRELYLNEDNISD------ISPLANLTKMYSLNLGANHNLSD-------LSPLSN 153

Query: 487 FTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLL 546
            T  L+Y  +                + + +    P         L  L L+YN +  + 
Sbjct: 154 MT-GLNYLTV----------------TESKVKDVTPIANLTD---LYSLSLNYNQIEDIS 193

Query: 547 PQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLK 606
           P  L + +  L       N+     P   ++   L  + + +N +    P  L N S L 
Sbjct: 194 P--LASLT-SLHYFTAYVNQITDITPVANMT--RLNSLKIGNNKITDLSP--LANLSQLT 246

Query: 607 FLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFT 666
           +L++G NQIS    + +  L +L +L + SN+    I + +      +L  + L+NN+  
Sbjct: 247 WLEIGTNQISD--INAVKDLTKLKMLNVGSNQ----ISDISVLNNLSQLNSLFLNNNQLG 300

Query: 667 GKLPS 671
            +   
Sbjct: 301 NEDME 305

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 94.9 bits (237), Expect = 4e-21
 Identities = 66/383 (17%), Positives = 138/383 (36%), Gaps = 62/383 (16%)

Query: 434 LEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSY 493
                L    +   V +      +++ + L ++   +       + +  N +   L+L+ 
Sbjct: 24  GIRAVLQKASVTDVVTQ----EELESITKLVVAGEKVASI--QGIEYLTNLE--YLNLNG 75

Query: 494 NYLQGPLPVPP-PQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDN 552
           N +    P+    +  +  +  N +T         +  +L  L L+ +N+S + P  L N
Sbjct: 76  NQITDISPLSNLVKLTNLYIGTNKITDISAL---QNLTNLRELYLNEDNISDISP--LAN 130

Query: 553 FSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGN 612
            +  +  L+L  N    S      +   L  + ++++ ++   P  + N + L  L L  
Sbjct: 131 LT-KMYSLNLGANHN-LSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY 186

Query: 613 NQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSK 672
           NQI    P  L +L  L+      N++  +            L  + + NN         
Sbjct: 187 NQIEDISP--LASLTSLHYFTAYVNQITDIT----PVANMTRLNSLKIGNN--------- 231

Query: 673 YFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLT-MSNKGQMMSYDKVPNFL 731
                   ++ + S L  +  + +         L I    ++ ++    +         L
Sbjct: 232 --------KITDLSPLANLSQLTW---------LEIGTNQISDINAVKDLTK-------L 267

Query: 732 TGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSG 791
             + + SN+      + + NL  L  L L NN L    +  +G LT L +L LS N  + 
Sbjct: 268 KMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

Query: 792 QIPQQLVDLTFLEFFNVSNNNLT 814
             P  L  L+ ++  + +N  + 
Sbjct: 326 IRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 91.4 bits (228), Expect = 6e-20
 Identities = 61/336 (18%), Positives = 120/336 (35%), Gaps = 56/336 (16%)

Query: 488 TLDLSYNYLQGPLPVPP-PQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLL 546
           TL      +    P     +    ++   S+T  +         S+  L ++   ++ + 
Sbjct: 4   TLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQ---EELESITKLVVAGEKVASIQ 60

Query: 547 PQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLK 606
              ++  + +L  L+L  N+     P + L    L  + +  N +      +L N ++L+
Sbjct: 61  G--IEYLT-NLEYLNLNGNQITDISPLSNLV--KLTNLYIGTNKIT--DISALQNLTNLR 113

Query: 607 FLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFT 666
            L L  + IS   P  L  L ++  L L +N     + + +       L  + ++ ++  
Sbjct: 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHN---LSDLSPLSNMTGLNYLTVTESKVK 168

Query: 667 GKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLT-MSNKGQMMSYD 725
              P           + N ++L                 L +    +  +S    + S  
Sbjct: 169 DVTP-----------IANLTDLYS---------------LSLNYNQIEDISPLASLTS-- 200

Query: 726 KVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLS 785
                L       N+     P  +AN+  L  L + NN +    LS L NL+ L  L++ 
Sbjct: 201 -----LHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIG 251

Query: 786 NNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGN 821
            N+ S      + DLT L+  NV +N ++      N
Sbjct: 252 TNQISD--INAVKDLTKLKMLNVGSNQISDISVLNN 285

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.6 bits (148), Expect = 8e-10
 Identities = 35/218 (16%), Positives = 76/218 (34%), Gaps = 45/218 (20%)

Query: 605 LKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNR 664
              L      I+  FP     L E    +L+   +  ++ +         +  + ++  +
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQEE----LESITKLVVAGEK 55

Query: 665 FTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLT-MSNKGQMMS 723
                              +   + Y+  + Y         L +    +T +S    ++ 
Sbjct: 56  VA-----------------SIQGIEYLTNLEY---------LNLNGNQITDISPLSNLVK 89

Query: 724 YDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLD 783
                  LT + + +N+      +++ NL  L+ L L  +++    +S L NLT + SL+
Sbjct: 90  -------LTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLN 138

Query: 784 LSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGN 821
           L  N         L ++T L +  V+ + +    P  N
Sbjct: 139 LGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTPIAN 175

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  139 bits (351), Expect = 5e-35
 Identities = 72/322 (22%), Positives = 127/322 (39%), Gaps = 14/322 (4%)

Query: 151 QIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHS 210
            +P  I   +    LDL  N    +  L +    +      +L+EL L    +S+  P +
Sbjct: 25  AVPEGIP--TETRLLDLGKN---RIKTLNQDEFASF----PHLEELELNENIVSAVEPGA 75

Query: 211 LANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDI 270
             NL +L  L L    L+     +   L+ L  LD+S N ++  L     +L  LK L++
Sbjct: 76  FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135

Query: 271 SWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPAS 330
             N+L      +   L SLEQL L           ++ +   L  L L   + +     S
Sbjct: 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS 195

Query: 331 FGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHL 390
           F  L  L+ L+IS   +   +  +      L  L  +H N +  +       +  +L  L
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAV-RHLVYLRFL 253

Query: 391 SLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNF-LKNQHYLEVLDLSCNKIHGKVP 449
           +LS N +S    ++ +   +   + L    L     +  +  +YL VL++S N++   + 
Sbjct: 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLE 312

Query: 450 KWLIEPSMQNFSYLNLSHNFLI 471
           + +    + N   L L  N L 
Sbjct: 313 ESVFHS-VGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  127 bits (321), Expect = 3e-31
 Identities = 78/311 (25%), Positives = 127/311 (40%), Gaps = 16/311 (5%)

Query: 90  LDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEI-INLSRLSYLNLSSAGF 148
           LDL  + ++    +        HLE L+L  N    S + P    NL  L  L L S   
Sbjct: 37  LDLGKNRIKTL--NQDEFASFPHLEELELNENIV--SAVEPGAFNNLFNLRTLGLRS-NR 91

Query: 149 FGQIPSEILE-LSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPI 207
              IP  +   LSNL  LD+S N    ++ L +     + + L NLK L +G   +    
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISEN---KIVILLD----YMFQDLYNLKSLEVGDNDLVYIS 144

Query: 208 PHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKR 267
             + + L+SL  L+L  C L       L +L  L+ L L   N+      S   L  LK 
Sbjct: 145 HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV 204

Query: 268 LDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGEL 327
           L+IS       +  +     +L  L ++          ++ +   L +L+L+ N  S   
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE 264

Query: 328 PASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHL 387
            +    L  L+ + +   + +   P + R L  L+ L  S N  +  ++  +F  +  +L
Sbjct: 265 GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT-LEESVF-HSVGNL 322

Query: 388 EHLSLSSNRLS 398
           E L L SN L+
Sbjct: 323 ETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  118 bits (298), Expect = 3e-28
 Identities = 66/309 (21%), Positives = 111/309 (35%), Gaps = 9/309 (2%)

Query: 191 TNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNN 250
           T  + L LG   I +      A+   L  L L+   +    P    NL  L  L L  +N
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR-SN 90

Query: 251 LLGELPTSI-GNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGN 309
            L  +P  +   L  L +LDIS N++   L     +L +L+ LE+  N     +  +   
Sbjct: 91  RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 310 FTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHN 369
              L  L+L   + +     +  +L  L  L +     ++    S + L +LK LE SH 
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210

Query: 370 NFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNF-L 428
            +   +  +       +L  LS++   L+              F+ L    ++      L
Sbjct: 211 PYLDTMTPNCL--YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268

Query: 429 KNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFT 488
                L+ + L   ++   V  +     +     LN+S N L         F    +  T
Sbjct: 269 HELLRLQEIQLVGGQLA-VVEPYAFR-GLNYLRVLNVSGNQLTTL--EESVFHSVGNLET 324

Query: 489 LDLSYNYLQ 497
           L L  N L 
Sbjct: 325 LILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  117 bits (295), Expect = 6e-28
 Identities = 71/376 (18%), Positives = 126/376 (33%), Gaps = 81/376 (21%)

Query: 310 FTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHN 369
            T    L L  N         F +   LE L+++E   S+  P +  NL  L+ L    N
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90

Query: 370 NFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLK 429
                I L +F     +L  L +S N++ +    +F          L +           
Sbjct: 91  RLKL-IPLGVF-TGLSNLTKLDISENKIVILLDYMFQ--------DLYN----------- 129

Query: 430 NQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYL-NLSHNFLIGFYQHPMFFPRNYDGFT 488
               L+ L++  N +        I      FS L +L                       
Sbjct: 130 ----LKSLEVGDNDLV------YISHRA--FSGLNSLE---------------------Q 156

Query: 489 LDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQ 548
           L L    L               +   +L+           + L +L L + N++ +   
Sbjct: 157 LTLEKCNLT-------------SIPTEALSH---------LHGLIVLRLRHLNINAIRDY 194

Query: 549 CLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFL 608
                   L +L++ H  +  ++    L G +L  + ++   L      ++ +   L+FL
Sbjct: 195 SFKRLY-RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL 253

Query: 609 DLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGK 668
           +L  N IS    S L  L  L  + L   +L  +  EP    G   LR++++S N+ T  
Sbjct: 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV--EPYAFRGLNYLRVLNVSGNQLT-T 310

Query: 669 LPSKYFQCWNAMQVVN 684
           L    F     ++ + 
Sbjct: 311 LEESVFHSVGNLETLI 326

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  105 bits (264), Expect = 5e-24
 Identities = 63/332 (18%), Positives = 119/332 (35%), Gaps = 36/332 (10%)

Query: 485 DGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSG 544
               +              P +T+   +  N +   +      S   LE L+L+ N +S 
Sbjct: 12  QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSA 70

Query: 545 LLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSG-RSLMMIDLSDNLLQGRIPRSLVNCS 603
           + P   +N   +L  L L+ N+    IP    +G  +L  +D+S+N +   +     +  
Sbjct: 71  VEPGAFNNLF-NLRTLGLRSNRL-KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128

Query: 604 SLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNN 663
           +LK L++G+N +          L  L  L L+   L  +            L ++ L + 
Sbjct: 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI--PTEALSHLHGLIVLRLRHL 186

Query: 664 RFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMS 723
                +    F+    ++V+  S   Y++               +    L   N      
Sbjct: 187 NIN-AIRDYSFKRLYRLKVLEISHWPYLD--------------TMTPNCLYGLN------ 225

Query: 724 YDKVPNFLTGVILSSNRFDGEIPT-SIANLKGLQVLSLANNSLHGHILSCLGNLTGLESL 782
                  LT + ++       +P  ++ +L  L+ L+L+ N +     S L  L  L+ +
Sbjct: 226 -------LTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEI 277

Query: 783 DLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLT 814
            L   + +   P     L +L   NVS N LT
Sbjct: 278 QLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  104 bits (262), Expect = 9e-24
 Identities = 74/403 (18%), Positives = 122/403 (30%), Gaps = 87/403 (21%)

Query: 266 KRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSG 325
           + +          +P  I        L+L  NR +        +F  L  L L  N  S 
Sbjct: 14  RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70

Query: 326 ELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFK 385
             P +F NL +L  L +   +           L+ L  L+ S N     +   MF  +  
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI-LLDYMF-QDLY 128

Query: 386 HLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIH 445
           +L+ L +  N L   +   F+        GL S               LE L L    + 
Sbjct: 129 NLKSLEVGDNDLVYISHRAFS--------GLNS---------------LEQLTLEKCNLT 165

Query: 446 GKVPKWLIEPSMQNFSYL-NLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPP 504
                  I       S+L  L                       L L +  +        
Sbjct: 166 ------SIPTEA--LSHLHGLI---------------------VLRLRHLNIN------- 189

Query: 505 PQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNN-LSGLLPQCLDNFSDHLSILDLQ 563
                           I  +       L++L++S+   L  + P CL   +  L+ L + 
Sbjct: 190 ---------------AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN--LTSLSIT 232

Query: 564 HNKFCGSIP-QTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSW 622
           H     ++P         L  ++LS N +       L     L+ + L   Q++   P  
Sbjct: 233 HCNL-TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYA 291

Query: 623 LGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRF 665
              L  L VL +  N+L  +  E +       L  + L +N  
Sbjct: 292 FRGLNYLRVLNVSGNQLTTL--EESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 85.5 bits (212), Expect = 2e-17
 Identities = 43/295 (14%), Positives = 94/295 (31%), Gaps = 59/295 (20%)

Query: 526 CNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMID 585
           C  S     +         + P+          +LDL  N+        F S   L  ++
Sbjct: 7   CECSAQDRAVLCHRKRFVAV-PE---GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELE 62

Query: 586 LSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIRE 645
           L++N++    P +  N  +L+ L L +N++          L  L  L +  NK+  +   
Sbjct: 63  LNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL--L 120

Query: 646 PNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAA 705
                    L+ +++ +N     +  + F   N+++ +                      
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLT--------------------- 158

Query: 706 LGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSL 765
                                         L           ++++L GL VL L + ++
Sbjct: 159 ------------------------------LEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188

Query: 766 HGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQG 820
           +         L  L+ L++S+  +   +    +    L   ++++ NLT  +P  
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYL 242

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 85.2 bits (211), Expect = 2e-17
 Identities = 60/336 (17%), Positives = 110/336 (32%), Gaps = 45/336 (13%)

Query: 462 YLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPP------PQTKHYLVSNN 515
            L+L  N +     +   F        L+L+ N +     V P         +   + +N
Sbjct: 36  LLDLGKNRIKTL--NQDEFASFPHLEELELNENIVSA---VEPGAFNNLFNLRTLGLRSN 90

Query: 516 SLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTF 575
            L   IP  +    ++L  LD+S N +  LL     +   +L  L++  N     I    
Sbjct: 91  RLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY-NLKSLEVGDNDL-VYISHRA 147

Query: 576 LSG-RSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLIL 634
            SG  SL  + L    L      +L +   L  L L +  I+         L  L VL +
Sbjct: 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207

Query: 635 KSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGM 694
                   +           L  + +++   T  +P    +        +   LR+    
Sbjct: 208 SHWPYLDTM--TPNCLYGLNLTSLSITHCNLT-AVPYLAVR--------HLVYLRF---- 252

Query: 695 IYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKG 754
                      L +    ++      +    +    L  + L   +     P +   L  
Sbjct: 253 -----------LNLSYNPISTIEGSMLHELLR----LQEIQLVGGQLAVVEPYAFRGLNY 297

Query: 755 LQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFS 790
           L+VL+++ N L     S   ++  LE+L L +N  +
Sbjct: 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  135 bits (340), Expect = 5e-33
 Identities = 99/579 (17%), Positives = 181/579 (31%), Gaps = 63/579 (10%)

Query: 125 CSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLG 184
              I   +        +++           E + L+N   +   ++    + +L      
Sbjct: 16  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS---TMRKLPA---- 68

Query: 185 NLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYL 244
            L+     ++ L L  + I     ++ A   ++  L +    +R   P +  N+  L  L
Sbjct: 69  ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128

Query: 245 DLSFNNLLGELPTSI-GNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKT 303
            L   N L  LP  I  N   L  L +S N L      +     SL+ L+LS NR    T
Sbjct: 129 VLE-RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL---T 184

Query: 304 PHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKF 363
              +     L+  +++ N  S     +     ++E LD S    +  +   +    +L  
Sbjct: 185 HVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINV-VRGPV--NVELTI 236

Query: 364 LEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNE 423
           L+  HNN +   D     +N+  L  + LS N L       F   Q+   + + +  L  
Sbjct: 237 LKLQHNNLT---DTAWL-LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 292

Query: 424 FPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRN 483
              + +    L+VLDLS N +   V +    P       L L HN ++          +N
Sbjct: 293 LNLYGQPIPTLKVLDLSHNHLL-HVERNQ--PQFDRLENLYLDHNSIVTLKLSTHHTLKN 349

Query: 484 YDGFTLDLSYNYLQG-PLPVPPPQTKHYLVSNNSLTGKIPFWI------CNSSNSLEILD 536
                L LS+N      L           V +     KI + +        S        
Sbjct: 350 -----LTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRL 404

Query: 537 LSYNNLSGLL--PQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGR 594
           L Y  L+ ++   Q           ++   +       Q  +  +    ++   N L+  
Sbjct: 405 LQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAE 464

Query: 595 IPR------------------SLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKS 636
           + +                     N    +    G  + S         L+E     L+ 
Sbjct: 465 VQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRE 524

Query: 637 NKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQ 675
                  R         E   ++  N     +L +K  +
Sbjct: 525 T----QARRTEADAKQKETEDLEQENIALEKQLDNKRAK 559

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  121 bits (306), Expect = 8e-29
 Identities = 64/359 (17%), Positives = 126/359 (35%), Gaps = 36/359 (10%)

Query: 89  KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEII-NLSRLSYLNLSSAG 147
            +   NS ++     ++ L     +E L+L        EI          +  L +    
Sbjct: 55  IVTFKNSTMRKL--PAALLDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGF-N 109

Query: 148 FFGQIPSEILE-LSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSP 206
               +P  + + +  L  L L  N   +L  L       +      L  L++    +   
Sbjct: 110 AIRYLPPHVFQNVPLLTVLVLERN---DLSSLPR----GIFHNTPKLTTLSMSNNNLERI 162

Query: 207 IPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLK 266
              +    +SL  L LS   L   +   L  +  L + ++S+N L     +++     ++
Sbjct: 163 EDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL-----STLAIPIAVE 214

Query: 267 RLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGE 326
            LD S N ++  +   +     L  L+L  N         + N+  L  + L+ N+    
Sbjct: 215 ELDASHNSIN-VVRGPV--NVELTILKLQHNNLT--DTAWLLNYPGLVEVDLSYNELEKI 269

Query: 327 LPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKH 386
           +   F  ++ LE L IS  +  + +    + +  LK L+ SHN+      ++     F  
Sbjct: 270 MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL---HVERNQPQFDR 325

Query: 387 LEHLSLSSNRLSLFTKAIFNTSQKFNFVGLR---SCNLNEFPNFLKNQHYLEVLDLSCN 442
           LE+L L  N +     +  +T +           +     F N  +    ++  D  C 
Sbjct: 326 LENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPA--VDDADQHCK 382

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  117 bits (295), Expect = 2e-27
 Identities = 87/486 (17%), Positives = 172/486 (35%), Gaps = 40/486 (8%)

Query: 167 LSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCE 226
             +N      E K  +            ++ +   T           L++  +++     
Sbjct: 5   QRYNVKPRQPEYKCIDSNLQY--DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST 62

Query: 227 LRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSI-GNLDCLKRLDISWNELSGELPASIGN 285
           +R    +LL +  ++  L+L+ +  + E+ T        +++L + +N +    P    N
Sbjct: 63  MRKLPAALLDSFRQVELLNLN-DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121

Query: 286 LASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISEC 345
           +  L  L L  N           N  +L  LS+++N+       +F    SL+ L +S  
Sbjct: 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181

Query: 346 KFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIF 405
           + +  +  SL  +  L     S+N  S        L     +E L  S N +++    + 
Sbjct: 182 RLTH-VDLSL--IPSLFHANVSYNLLS-------TLAIPIAVEELDASHNSINVVRGPVN 231

Query: 406 NTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNL 465
                     L+  NL +      N   L  +DLS N++  K+        MQ    L +
Sbjct: 232 VELTILK---LQHNNLTDTAWL-LNYPGLVEVDLSYNELE-KIMYHPFV-KMQRLERLYI 285

Query: 466 SHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQG-PLPVPPPQTKHYL-VSNNSLTGKIPF 523
           S+N L+      ++         LDLS+N+L       P       L + +NS+   +  
Sbjct: 286 SNNRLVAL---NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV-TLKL 341

Query: 524 WICNSSNSLEILDLSYNNLS---------GLLPQCLDNFSDHLSILDLQHNKFCGSIPQT 574
              ++ ++L+ L LS+N+            +    +D+   H  I     +  C      
Sbjct: 342 ---STHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDK 398

Query: 575 FLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLIL 634
               R L  I L+   +  ++ R+   CS+   ++   +            L+    L  
Sbjct: 399 PYLDRLLQYIALTS--VVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEA 456

Query: 635 KSNKLH 640
           + N+L 
Sbjct: 457 EVNELR 462

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 52.6 bits (126), Expect = 5e-07
 Identities = 38/274 (13%), Positives = 73/274 (26%), Gaps = 57/274 (20%)

Query: 101 INSSSGLFKLVHLEWLDLAFNYFICSEIPPEII-NLSRLSYLNLSSAGFFGQIPSEILEL 159
           +  ++ L     L  +DL++N     +I       + RL  L +S+      +      +
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNEL--EKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPI 300

Query: 160 SNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTL 219
             L  LDLSHN                   L +              +  +      L  
Sbjct: 301 PTLKVLDLSHN------------------HLLH--------------VERNQPQFDRLEN 328

Query: 220 LSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELS-GE 278
           L L    +   +   L     L  L LS N+          + + L+ L  +    +  +
Sbjct: 329 LYLDHNSIV-TLK--LSTHHTLKNLTLSHNDW---------DCNSLRALFRNVARPAVDD 376

Query: 279 LPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLE 338
                     LE               S   +       +A      ++  + G   + +
Sbjct: 377 ADQHCKIDYQLEHGLCCKE--------SDKPYLDRLLQYIALTSVVEKVQRAQGRCSATD 428

Query: 339 GLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFS 372
            ++  +             L   + LE   N   
Sbjct: 429 TINSVQSLSHYITQQGGVPLQGNEQLEAEVNELR 462

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  131 bits (331), Expect = 5e-33
 Identities = 80/406 (19%), Positives = 141/406 (34%), Gaps = 33/406 (8%)

Query: 125 CSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLG 184
              I   +        +++           E + L+N   +   ++    + +L      
Sbjct: 10  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS---TMRKLPA---- 62

Query: 185 NLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYL 244
            L+     ++ L L  + I     ++ A   ++  L +    +R   P +  N+  L  L
Sbjct: 63  ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122

Query: 245 DLSFNNLLGELPTSI-GNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKT 303
            L   N L  LP  I  N   L  L +S N L      +     SL+ L+LS NR    T
Sbjct: 123 VLE-RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL---T 178

Query: 304 PHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKF 363
              +     L+  +++ N  S     +     ++E LD S    +  +   +    +L  
Sbjct: 179 HVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINV-VRGPV--NVELTI 230

Query: 364 LEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNE 423
           L+  HNN +   D     +N+  L  + LS N L       F   Q+   + + +  L  
Sbjct: 231 LKLQHNNLT---DTAWL-LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 286

Query: 424 FPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRN 483
              + +    L+VLDLS N +   V +    P       L L HN ++          +N
Sbjct: 287 LNLYGQPIPTLKVLDLSHNHLL-HVERNQ--PQFDRLENLYLDHNSIVTLKLSTHHTLKN 343

Query: 484 YDGFTLDLSYNYLQG-PLPVPPPQTKHYLVSNNSLTGKIPFWICNS 528
                L LS+N      L           V +     KI + + + 
Sbjct: 344 -----LTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHG 384

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  128 bits (324), Expect = 4e-32
 Identities = 70/392 (17%), Positives = 127/392 (32%), Gaps = 57/392 (14%)

Query: 90  LDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEII-NLSRLSYLNLSSAGF 148
            D+        +        L + + +    +     ++P  ++ +  ++  LNL+    
Sbjct: 24  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLND-LQ 80

Query: 149 FGQIPSEILE-LSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPI 207
             +I +        +  L +  N    +  L      ++ + +  L  L L    +SS  
Sbjct: 81  IEEIDTYAFAYAHTIQKLYMGFN---AIRYLPP----HVFQNVPLLTVLVLERNDLSSLP 133

Query: 208 PHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKR 267
                N   LT LS+S   L           T L  L LS +N L  +   +  +  L  
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS-SNRLTHVD--LSLIPSLFH 190

Query: 268 LDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGEL 327
            ++S+N LS     ++    ++E+L+ S N               L  L L  N+ + + 
Sbjct: 191 ANVSYNLLS-----TLAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLT-DT 241

Query: 328 PASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHL 387
                N   L  +D+S  +    +      + +L+ L  S+N       L+++      L
Sbjct: 242 AW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV---ALNLYGQPIPTL 297

Query: 388 EHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGK 447
           + L LS N L    +      +                        LE L L  N I   
Sbjct: 298 KVLDLSHNHLLHVERNQPQFDR------------------------LENLYLDHNSI--- 330

Query: 448 VPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMF 479
               L   +      L LSHN         +F
Sbjct: 331 --VTLKLSTHHTLKNLTLSHNDWDCNSLRALF 360

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  123 bits (310), Expect = 2e-30
 Identities = 64/359 (17%), Positives = 126/359 (35%), Gaps = 36/359 (10%)

Query: 89  KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEII-NLSRLSYLNLSSAG 147
            +   NS ++     ++ L     +E L+L        EI          +  L +    
Sbjct: 49  IVTFKNSTMRKL--PAALLDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGF-N 103

Query: 148 FFGQIPSEILE-LSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSP 206
               +P  + + +  L  L L  N   +L  L       +      L  L++    +   
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERN---DLSSLPR----GIFHNTPKLTTLSMSNNNLERI 156

Query: 207 IPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLK 266
              +    +SL  L LS   L   +   L  +  L + ++S+N L     +++     ++
Sbjct: 157 EDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL-----STLAIPIAVE 208

Query: 267 RLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGE 326
            LD S N ++  +   +     L  L+L  N         + N+  L  + L+ N+    
Sbjct: 209 ELDASHNSIN-VVRGPV--NVELTILKLQHNNLT--DTAWLLNYPGLVEVDLSYNELEKI 263

Query: 327 LPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKH 386
           +   F  ++ LE L IS  +  + +    + +  LK L+ SHN+      ++     F  
Sbjct: 264 MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL---HVERNQPQFDR 319

Query: 387 LEHLSLSSNRLSLFTKAIFNTSQKFNFVGLR---SCNLNEFPNFLKNQHYLEVLDLSCN 442
           LE+L L  N +     +  +T +           +     F N  +    ++  D  C 
Sbjct: 320 LENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPA--VDDADQHCK 376

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  120 bits (303), Expect = 2e-29
 Identities = 65/367 (17%), Positives = 120/367 (32%), Gaps = 30/367 (8%)

Query: 303 TPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLK 362
              ++      Y + +               L + + +            + L +  Q++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 363 FLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLN 422
            L  +       ID   F      ++ L +  N +      +F        + L   +L+
Sbjct: 73  LLNLNDLQIEE-IDTYAF-AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130

Query: 423 EFP-NFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFP 481
             P     N   L  L +S N +  ++     +    +   L LS N L          P
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQA-TTSLQNLQLSSNRLTHV--DLSLIP 186

Query: 482 RNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNN 541
                F  ++SYN L   L   P   +    S+NS+   +       +  L IL L +NN
Sbjct: 187 SL---FHANVSYNLLST-LA-IPIAVEELDASHNSIN-VVRG---PVNVELTILKLQHNN 237

Query: 542 LSGLLPQCLDNFSD--HLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSL 599
           L+           +   L  +DL +N+    +   F+  + L  + +S+N L   +    
Sbjct: 238 LTDT-----AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYG 291

Query: 600 VNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIID 659
               +LK LDL +N +             L  L L  N +  +            L+ + 
Sbjct: 292 QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLS-----THHTLKNLT 345

Query: 660 LSNNRFT 666
           LS+N + 
Sbjct: 346 LSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  118 bits (298), Expect = 8e-29
 Identities = 82/410 (20%), Positives = 129/410 (31%), Gaps = 48/410 (11%)

Query: 231 IPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLE 290
           I S L        + +               L+  K +    + +     A + +   +E
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 291 QLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQ 350
            L L+  +      ++      +  L +  N      P  F N+  L  L +     SS 
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 132

Query: 351 IPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQK 410
                 N  +L  L  S+NN    I+ D F      L++L LSSNRL+    ++  +   
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLER-IEDDTF-QATTSLQNLQLSSNRLTHVDLSLIPSLFH 190

Query: 411 FNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFL 470
            N   +    L+           +E LD S N I+      +  P     + L L HN L
Sbjct: 191 AN---VSYNLLSTLA----IPIAVEELDASHNSINV-----VRGPVNVELTILKLQHNNL 238

Query: 471 IGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSN 530
                   +         +DLSYN L+                      KI +       
Sbjct: 239 T----DTAWLLNYPGLVEVDLSYNELE----------------------KIMYHPFVKMQ 272

Query: 531 SLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNL 590
            LE L +S N L   L          L +LDL HN     + +       L  + L  N 
Sbjct: 273 RLERLYISNNRLVA-LNLYGQPIP-TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 329

Query: 591 LQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLH 640
           +   +  S     +LK L L +N         L   R +    +     H
Sbjct: 330 IV-TLKLS--THHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  114 bits (288), Expect = 2e-27
 Identities = 70/379 (18%), Positives = 131/379 (34%), Gaps = 48/379 (12%)

Query: 190 LTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFN 249
                ++ +   T           L++  +++     +R    +LL +  ++  L+L+ +
Sbjct: 20  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN-D 78

Query: 250 NLLGELPTSI-GNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMG 308
             + E+ T        +++L + +N +    P    N+  L  L L  N           
Sbjct: 79  LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 138

Query: 309 NFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSH 368
           N  +L  LS+++N+       +F    SL+ L +S  + +  +  S   +  L     S+
Sbjct: 139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLS--LIPSLFHANVSY 195

Query: 369 NNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFL 428
           N  S        L     +E L  S N +++    +           L+  NL +     
Sbjct: 196 NLLS-------TLAIPIAVEELDASHNSINVVRGPVNVELTILK---LQHNNLTDTAWL- 244

Query: 429 KNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFT 488
            N   L  +DLS N++  K+        MQ    L +S+N L+      ++         
Sbjct: 245 LNYPGLVEVDLSYNELE-KIMYHPFV-KMQRLERLYISNNRLVAL---NLYGQPIPTLKV 299

Query: 489 LDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQ 548
           LDLS+N+L                        +          LE L L +N++  L   
Sbjct: 300 LDLSHNHLL----------------------HVERNQPQFDR-LENLYLDHNSIVTLKLS 336

Query: 549 CLDNFSDHLSILDLQHNKF 567
                   L  L L HN +
Sbjct: 337 THHT----LKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 98.6 bits (246), Expect = 5e-22
 Identities = 55/285 (19%), Positives = 105/285 (36%), Gaps = 21/285 (7%)

Query: 530 NSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDN 589
           N+ +I+    + +  L    LD+F   + +L+L   +        F    ++  + +  N
Sbjct: 45  NNQKIVTFKNSTMRKLPAALLDSFR-QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103

Query: 590 LLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTG 649
            ++   P    N   L  L L  N +S           +L  L + +N L  +  E +T 
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI--EDDTF 161

Query: 650 CGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIY 709
                L+ + LS+NR T  +         ++   N S    +  +  P A+     L   
Sbjct: 162 QATTSLQNLQLSSNRLT-HVDLSLIP---SLFHANVSYNL-LSTLAIPIAVEE---LDAS 213

Query: 710 DYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHI 769
             S+ +      +        LT + L  N    +    + N  GL  + L+ N L   +
Sbjct: 214 HNSINVVRGPVNVE-------LTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIM 264

Query: 770 LSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLT 814
                 +  LE L +SNN+    +      +  L+  ++S+N+L 
Sbjct: 265 YHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 85.9 bits (213), Expect = 6e-18
 Identities = 57/337 (16%), Positives = 122/337 (36%), Gaps = 43/337 (12%)

Query: 488 TLDLSYN---YLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSG 544
            +    +    L   L     Q +   +++  +  +I  +    +++++ L + +N +  
Sbjct: 49  IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRY 107

Query: 545 LLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSS 604
           L P    N    L++L L+ N         F +   L  + +S+N L+     +    +S
Sbjct: 108 LPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 166

Query: 605 LKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNR 664
           L+ L L +N+++      L  +  L    +  N L  +            +  +D S+N 
Sbjct: 167 LQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLSTLAIPIA-------VEELDASHNS 216

Query: 665 FTGKLPSKYFQCWNAMQVVNTSELRYME----GMIYPFALVSYAALGIYDYSLTMS-NKG 719
               +                 EL  ++     +     L++Y  L      + +S N+ 
Sbjct: 217 IN-VVRGPVNV-----------ELTILKLQHNNLTDTAWLLNYPGL----VEVDLSYNEL 260

Query: 720 QMMSYDKVPNF--LTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLT 777
           + + Y        L  + +S+NR    +      +  L+VL L++N L  H+        
Sbjct: 261 EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD 318

Query: 778 GLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLT 814
            LE+L L +N     +         L+   +S+N+  
Sbjct: 319 RLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 67.0 bits (164), Expect = 8e-12
 Identities = 47/266 (17%), Positives = 93/266 (34%), Gaps = 43/266 (16%)

Query: 551 DNFSDHLSILDLQHNKFCGSIPQTF--LSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFL 608
            N        D+  +     +   F  ++  +  ++   ++ ++      L +   ++ L
Sbjct: 15  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 74

Query: 609 DLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGK 668
           +L + QI             +  L +  N +  +   P+     P L ++ L  N  +  
Sbjct: 75  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL--PPHVFQNVPLLTVLVLERNDLS-S 131

Query: 669 LPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVP 728
           LP   F         NT +L                 L + + +L         ++    
Sbjct: 132 LPRGIFH--------NTPKLTT---------------LSMSNNNLERIEDD---TFQATT 165

Query: 729 NFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNK 788
           + L  + LSSNR    +   ++ +  L   +++ N L     S L     +E LD S+N 
Sbjct: 166 S-LQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNS 216

Query: 789 FSGQIPQQLVDLTFLEFFNVSNNNLT 814
            +       V+LT L    + +NNLT
Sbjct: 217 INVVRGPVNVELTIL---KLQHNNLT 239

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.4 bits (152), Expect = 3e-10
 Identities = 38/250 (15%), Positives = 79/250 (31%), Gaps = 38/250 (15%)

Query: 565 NKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLG 624
                 I            + +             +  ++ K +   N+ +     + L 
Sbjct: 7   QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLD 66

Query: 625 TLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVN 684
           + R++ +L L   ++  +  +         ++ + +  N     LP   FQ        N
Sbjct: 67  SFRQVELLNLNDLQIEEI--DTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQ--------N 115

Query: 685 TSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGE 744
              L                 L +    L+   +G    +   P  LT + +S+N  +  
Sbjct: 116 VPLLTV---------------LVLERNDLSSLPRG---IFHNTPK-LTTLSMSNNNLERI 156

Query: 745 IPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLE 804
              +      LQ L L++N L  H+   L  +  L   ++S N  S      L     +E
Sbjct: 157 EDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVE 208

Query: 805 FFNVSNNNLT 814
             + S+N++ 
Sbjct: 209 ELDASHNSIN 218

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  128 bits (323), Expect = 3e-31
 Identities = 94/499 (18%), Positives = 180/499 (36%), Gaps = 51/499 (10%)

Query: 141 LNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGG 200
           ++ S  G    +P ++        L++S N    + EL   ++      L+ L+ L +  
Sbjct: 5   VDRSKNGLI-HVPKDLS--QKTTILNISQN---YISELWTSDI----LSLSKLRILIISH 54

Query: 201 VTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLG-ELPTSI 259
             I             L  L LS  +L   I         L +LDLSFN      +    
Sbjct: 55  NRIQYLDISVFKFNQELEYLDLSHNKLVK-ISC--HPTVNLKHLDLSFNAFDALPICKEF 111

Query: 260 GNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLA 319
           GN+  LK L +S   L       I +L   + L +    +                 SL 
Sbjct: 112 GNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG--EKEDPEGLQDFNTESLH 169

Query: 320 SN-----DFSGELPASFGNLRSLEGLDIS------ECKFSSQIPSSLRNLAQLKFLEFSH 368
                  +F   L  S   + +LE  +I       +C +   I + L+   +L  L  ++
Sbjct: 170 IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229

Query: 369 NNFSGPIDLDMF-LVNFKHLEHLSLSSNRL-----SLFTKAIFNTSQKFNFVGLRSCNLN 422
              +    + +  LV    + + S+S+ +L              + +  +   + S    
Sbjct: 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG 289

Query: 423 EFPNFLKNQ-HYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFP 481
              +++      + + + + +    ++   L    +  F +L+ S+N L           
Sbjct: 290 FPQSYIYEIFSNMNIKNFTVSGT--RMVHMLCPSKISPFLHLDFSNNLLTDTV--FENCG 345

Query: 482 RNYDGFTLDLSYNYLQGPLPVPP------PQTKHYLVSNNSLTGKIPFWICNSSNSLEIL 535
              +  TL L  N L+  L             +   +S NS++       C+ + SL  L
Sbjct: 346 HLTELETLILQMNQLKE-LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404

Query: 536 DLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRI 595
           ++S N L+  + +CL      + +LDL  NK   SIP+  +   +L  ++++ N L+  +
Sbjct: 405 NMSSNILTDTIFRCLPP---RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SV 459

Query: 596 PR-SLVNCSSLKFLDLGNN 613
           P       +SL+ + L  N
Sbjct: 460 PDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  125 bits (315), Expect = 3e-30
 Identities = 96/491 (19%), Positives = 171/491 (34%), Gaps = 47/491 (9%)

Query: 191 TNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNN 250
                L +    IS      + +LS L +L +S   ++    S+     +L YLDLS +N
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS-HN 79

Query: 251 LLGELPTSIGNLDCLKRLDISWNEL-SGELPASIGNLASLEQLELSLNRFRGKTPHSMGN 309
            L ++         LK LD+S+N   +  +    GN++ L+ L LS       +   + +
Sbjct: 80  KLVKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 310 FTRLY-WLSLASNDFSGELPASFGNLR--SLEGLDISECKFSSQIPSSLRNLAQLKFLEF 366
                  L L       E P    +    SL  +  +  +F   +  S++ +A L+    
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197

Query: 367 SHNNFSGPID--LDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEF 424
                       L +      + +  +L+ N +     +     Q      +   +++  
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN- 256

Query: 425 PNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNY 484
              L+ Q      D S               S++  S   +  +               Y
Sbjct: 257 -VKLQGQLDFRDFDYSGT-------------SLKALSIHQVVSDVFG------FPQSYIY 296

Query: 485 DGFT----LDLSYNYLQG-PLPVP--PPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDL 537
           + F+     + + +  +   +  P       H   SNN LT    F  C     LE L L
Sbjct: 297 EIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLIL 355

Query: 538 SYNNLSGLLPQCLDNFSDH--LSILDLQHNKFCGSIPQ-TFLSGRSLMMIDLSDNLLQGR 594
             N L   L +  +  +    L  LD+  N       +      +SL+ +++S N+L   
Sbjct: 356 QMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414

Query: 595 IPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPE 654
           I R L     +K LDL +N+I  + P  +  L  L  L + SN+L  +            
Sbjct: 415 IFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSV--PDGIFDRLTS 469

Query: 655 LRIIDLSNNRF 665
           L+ I L  N +
Sbjct: 470 LQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  122 bits (308), Expect = 2e-29
 Identities = 93/526 (17%), Positives = 171/526 (32%), Gaps = 54/526 (10%)

Query: 268 LDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGEL 327
           +D S N L   +P  +        L +S N         + + ++L  L ++ N      
Sbjct: 5   VDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61

Query: 328 PASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHL 387
            + F   + LE LD+S  K    I         LK L+ S N F   + +     N   L
Sbjct: 62  ISVFKFNQELEYLDLSHNKLVK-ISC--HPTVNLKHLDLSFNAFDA-LPICKEFGNMSQL 117

Query: 388 EHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGK 447
           + L LS+  L   +            + +      E  +    Q       L       K
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD-FNTESLHIVFPTNK 176

Query: 448 VPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQT 507
              ++++ S++  + L LS+   +       +F         +   + L           
Sbjct: 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLT---------L 227

Query: 508 KHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDH----LSILDLQ 563
            +   + NS    +         ++    +S   L G L     ++S      LSI  + 
Sbjct: 228 NNIETTWNSFIRILQL---VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVV 284

Query: 564 HNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWL 623
            + F       +    ++ + + + +  +          S    LD  NN ++ T     
Sbjct: 285 SDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENC 344

Query: 624 GTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVV 683
           G L EL  LIL+ N+L  + +          L+ +D+S N  +            ++  +
Sbjct: 345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404

Query: 684 NTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDG 743
           N S                             SN      +  +P  +  + L SN+   
Sbjct: 405 NMS-----------------------------SNILTDTIFRCLPPRIKVLDLHSNKIK- 434

Query: 744 EIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKF 789
            IP  +  L+ LQ L++A+N L          LT L+ + L  N +
Sbjct: 435 SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  121 bits (306), Expect = 4e-29
 Identities = 83/451 (18%), Positives = 154/451 (34%), Gaps = 43/451 (9%)

Query: 239 TKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNR 298
            K   L++S N +     + I +L  L+ L IS N +     +       LE L+LS N+
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 299 FRGKTPHSMGNFTRLYWLSLASNDF-SGELPASFGNLRSLEGLDISECKFSSQIPSSLRN 357
                  S      L  L L+ N F +  +   FGN+  L+ L +S           + +
Sbjct: 81  LVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 358 LAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLR 417
           L   K L      +    D +        L+  +  S  +   T   F+     +   + 
Sbjct: 138 LNISKVLLVLGETYGEKEDPE-------GLQDFNTESLHIVFPTNKEFHFILDVSVKTVA 190

Query: 418 SCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHP 477
           +  L+     L++          C+     + K    P + N +  N+   +        
Sbjct: 191 NLELSNIKCVLEDNK--------CSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI--RI 240

Query: 478 MFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKH-------YLVSNNSLTGKIPFWICNSSN 530
           +    +   +   +S   LQG L                     + + G    +I    +
Sbjct: 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS 300

Query: 531 SLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNL 590
           ++ I + + +    +   C    S     LD  +N    ++ +       L  + L  N 
Sbjct: 301 NMNIKNFTVSGTRMVHMLCPSKISP-FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359

Query: 591 LQ--GRIPRSLVNCSSLKFLDLGNNQISGTFP----SWLGTLRELNVLILKSNKLHGMIR 644
           L+   +I        SL+ LD+  N +S        SW  +L  LN   + SN L   I 
Sbjct: 360 LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN---MSSNILTDTI- 415

Query: 645 EPNTGCGFPELRIIDLSNNRFTGKLPSKYFQ 675
                C  P ++++DL +N+    +P +  +
Sbjct: 416 ---FRCLPPRIKVLDLHSNKIK-SIPKQVVK 442

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 89.9 bits (223), Expect = 8e-19
 Identities = 53/332 (15%), Positives = 113/332 (34%), Gaps = 16/332 (4%)

Query: 86  HVIKLDLSNSCLQGFINSSSGLFKLVHLE-WLDLAFNYFICSEIPPEIINLSRLSYLNLS 144
           ++ K+ L      G      GL         +    N      +   +  ++ L   N+ 
Sbjct: 139 NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198

Query: 145 SAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLT-------NLKELA 197
                 +    +  L+ L +     N   N IE    +   +++ +        ++  + 
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258

Query: 198 LGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPT 257
           L G        +S  +L +L++  +           +    + +   + + +        
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML 318

Query: 258 SIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFR--GKTPHSMGNFTRLYW 315
               +     LD S N L+  +  + G+L  LE L L +N+ +   K          L  
Sbjct: 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378

Query: 316 LSLASNDFSGELPA-SFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGP 374
           L ++ N  S +         +SL  L++S    +  I   L    ++K L+   N     
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-- 434

Query: 375 IDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFN 406
             +   +V  + L+ L+++SN+L      IF+
Sbjct: 435 -SIPKQVVKLEALQELNVASNQLKSVPDGIFD 465

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 88.8 bits (220), Expect = 2e-18
 Identities = 74/404 (18%), Positives = 148/404 (36%), Gaps = 42/404 (10%)

Query: 89  KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGF 148
            LDLS++ L             V+L+ LDL+FN F    I  E  N+S+L +L LS+   
Sbjct: 73  YLDLSHNKLVKIS-----CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-- 125

Query: 149 FGQIPSEILE-LSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPI 207
              +    +  +++L    +         E ++P      + L +    +L  V  ++  
Sbjct: 126 --HLEKSSVLPIAHLNISKVLLVLGETYGEKEDP------EGLQDFNTESLHIVFPTNKE 177

Query: 208 PHSLANLSSLTLLSLS---------GCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTS 258
            H + ++S  T+ +L            +    +  L    T     +L+ NN+     + 
Sbjct: 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF 237

Query: 259 IGNLDCLKRLDISWNELSG----------ELPASIGNLASLEQLELSLNRFRGKTPHSMG 308
           I  L  +    + +  +S           +   S  +L +L   ++  + F     +   
Sbjct: 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE 297

Query: 309 NFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSH 368
            F+ +   +   +            +     LD S    +  +  +  +L +L+ L    
Sbjct: 298 IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357

Query: 369 NNFSG-PIDLDMFLVNFKHLEHLSLSSNRL-SLFTKAIFNTSQKFNFVGLRSCNLNEFPN 426
           N         +M     K L+ L +S N +     K   + ++    + + S  L +   
Sbjct: 358 NQLKELSKIAEMTT-QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI- 415

Query: 427 FLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFL 470
           F      ++VLDL  NKI   +PK ++   ++    LN++ N L
Sbjct: 416 FRCLPPRIKVLDLHSNKIK-SIPKQVV--KLEALQELNVASNQL 456

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 78.8 bits (194), Expect = 3e-15
 Identities = 56/345 (16%), Positives = 107/345 (31%), Gaps = 26/345 (7%)

Query: 488 TLDLSYNYLQGPLPVPP------PQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNN 541
            L++S NY+     +         + +  ++S+N +   +   +   +  LE LDLS+N 
Sbjct: 25  ILNISQNYISE---LWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNK 80

Query: 542 LSGLLPQCLDNFSDHLSILDLQHNKF-CGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLV 600
           L  +      N    L  LDL  N F    I + F +   L  + LS   L+      + 
Sbjct: 81  LVKISCHPTVN----LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 601 NCSSLK-FLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIID 659
           + +  K  L LG        P  L      ++ I+             +      L + +
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 660 LSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYP------FALVSYAALGIYD-YS 712
           +       K                 S L                 LV +  +  +   +
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256

Query: 713 LTMSNKGQMMSYDKVPNFLTGVI---LSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHI 769
           + +  +     +D     L  +    + S+ F             + + +   +      
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH 316

Query: 770 LSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLT 814
           + C   ++    LD SNN  +  + +    LT LE   +  N L 
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 67.2 bits (164), Expect = 1e-11
 Identities = 68/401 (16%), Positives = 127/401 (31%), Gaps = 31/401 (7%)

Query: 434 LEVLDLSCNKIHGKVPKWLIEP----SMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTL 489
             +L++S N I        +      S+     L +SHN +         F  N +   L
Sbjct: 23  TTILNISQNYISE------LWTSDILSLSKLRILIISHNRIQYL--DISVFKFNQELEYL 74

Query: 490 DLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQC 549
           DLS+N L      P    KH  +S N+           + + L+ L LS  +L       
Sbjct: 75  DLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLP 134

Query: 550 LDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLD 609
           + + +    +L L          +     +      L       +    +++ S     +
Sbjct: 135 IAHLNISKVLLVLGETY---GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVAN 191

Query: 610 LGNNQISG-----------TFPSWLGTLRELNVLILKSNKLHG-MIREPNTGCGFPELRI 657
           L  + I             +  + L T  +L+ L L + +                 +  
Sbjct: 192 LELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251

Query: 658 IDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSN 717
             +SN +  G+L  + F          +      +   +P + +      +   + T+S 
Sbjct: 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311

Query: 718 KGQ-MMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLH--GHILSCLG 774
                M      +    +  S+N     +  +  +L  L+ L L  N L     I     
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT 371

Query: 775 NLTGLESLDLSNNKFSGQIPQQLVD-LTFLEFFNVSNNNLT 814
            +  L+ LD+S N  S    +        L   N+S+N LT
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  123 bits (310), Expect = 7e-31
 Identities = 52/282 (18%), Positives = 100/282 (35%), Gaps = 16/282 (5%)

Query: 190 LTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFN 249
               K   +   ++   +     +  ++  L LSG  L     + L   TKL  L+LS +
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS-S 67

Query: 250 NLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGN 309
           N+L E    + +L  L+ LD++ N +       +    S+E L  + N     +      
Sbjct: 68  NVLYETL-DLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSC---SR 118

Query: 310 FTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSS-QIPSSLRNLAQLKFLEFSH 368
                 + LA+N  +       G    ++ LD+   +  +        +   L+ L   +
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 369 NNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFL 428
           N     +   +       L+ L LSSN+L+       + +    ++ LR+  L      L
Sbjct: 179 NFIYD-VKGQVVFAK---LKTLDLSSNKLAFMGPEFQSAA-GVTWISLRNNKLVLIEKAL 233

Query: 429 KNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFL 470
           +    LE  DL  N  H    +     + +  +    +   L
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  119 bits (300), Expect = 1e-29
 Identities = 49/262 (18%), Positives = 100/262 (38%), Gaps = 16/262 (6%)

Query: 207 IPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLK 266
           I     N +   +  ++   L+  + SL  +   +  LDLS N L       +     L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 267 RLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGE 326
            L++S N L  E    + +L++L  L+L+ N  +      +     +  L  A+N+ S  
Sbjct: 62  LLNLSSNVLY-ETL-DLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-R 113

Query: 327 LPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKH 386
           +  S    +  + + ++  K +          +++++L+   N     ++      +   
Sbjct: 114 VSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-VNFAELAASSDT 170

Query: 387 LEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHG 446
           LEHL+L  N +      +     K   + L S  L       ++   +  + L  NK+  
Sbjct: 171 LEHLNLQYNFIYDVKGQVVFAKLK--TLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV- 227

Query: 447 KVPKWLIEPSMQNFSYLNLSHN 468
            + K L     QN  + +L  N
Sbjct: 228 LIEKALR--FSQNLEHFDLRGN 247

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  118 bits (297), Expect = 3e-29
 Identities = 47/289 (16%), Positives = 96/289 (33%), Gaps = 26/289 (8%)

Query: 110 LVHLEWLDLAFNYFICSEIPPEII-NLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLS 168
               +   +  +     +    +  +   +  L+LS         +++   + L  L+LS
Sbjct: 9   GNRYKIEKVTDSSL--KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 169 HNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELR 228
            N    L E    +L +    L+ L+ L L    +       L    S+  L  +   + 
Sbjct: 67  SN---VLYET--LDLES----LSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS 112

Query: 229 GRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSG-ELPASIGNLA 287
            R+            + L+ N +        G    ++ LD+  NE+          +  
Sbjct: 113 -RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 288 SLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKF 347
           +LE L L  N            F +L  L L+SN  +  +   F +   +  + +   K 
Sbjct: 170 TLEHLNLQYNFIYDVKGQV--VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

Query: 348 SSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNR 396
              I  +LR    L+  +   N F     L  F    + ++ ++  + +
Sbjct: 227 VL-IEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  117 bits (295), Expect = 6e-29
 Identities = 54/283 (19%), Positives = 104/283 (36%), Gaps = 26/283 (9%)

Query: 128 IPPEIINLSRLSYLNLSSAGFFGQIPSEILE-LSNLVSLDLSHNSYYNLIELKEPNLGNL 186
           I     N +R     ++      Q  + + +   N+  LDLS N    L ++   +L   
Sbjct: 2   IHEIKQNGNRYKIEKVTD-SSLKQALASLRQSAWNVKELDLSGN---PLSQISAADLAP- 56

Query: 187 VKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDL 246
               T L+ L L    +   +   L +LS+L  L L+   +       L     +  L  
Sbjct: 57  ---FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHA 106

Query: 247 SFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRG-KTPH 305
           + NN +  +  S G     K + ++ N+++       G  + ++ L+L LN         
Sbjct: 107 ANNN-ISRVSCSRGQG--KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163

Query: 306 SMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLE 365
              +   L  L+L  N    ++         L+ LD+S  K +  +    ++ A + ++ 
Sbjct: 164 LAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWIS 220

Query: 366 FSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTS 408
             +N       ++  L   ++LEH  L  N     T   F + 
Sbjct: 221 LRNNKLV---LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  115 bits (291), Expect = 2e-28
 Identities = 54/310 (17%), Positives = 116/310 (37%), Gaps = 29/310 (9%)

Query: 89  KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEII-NLSRLSYLNLSSAG 147
              +++S L+  + S        +++ LDL+ N    S+I    +   ++L  LNLSS  
Sbjct: 14  IEKVTDSSLKQALASL--RQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNV 69

Query: 148 FFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPI 207
                  ++  LS L +LDL++N    + EL             +++ L      IS  +
Sbjct: 70  L--YETLDLESLSTLRTLDLNNN---YVQELLV---------GPSIETLHAANNNISR-V 114

Query: 208 PHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLG-ELPTSIGNLDCLK 266
               +       + L+  ++        G  +++ YLDL  N +          + D L+
Sbjct: 115 S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 267 RLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGE 326
            L++ +N +  ++   +   A L+ L+LS N+          +   + W+SL +N     
Sbjct: 173 HLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-L 228

Query: 327 LPASFGNLRSLEGLDISECKFSS-QIPSSLRNLAQLKFLEFSHNNF-SGPIDLDMFLVNF 384
           +  +    ++LE  D+    F    +        +++ +        +G  + +  +   
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

Query: 385 KHLEHLSLSS 394
            H        
Sbjct: 289 GHYGAYCCED 298

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  102 bits (257), Expect = 5e-24
 Identities = 46/282 (16%), Positives = 94/282 (33%), Gaps = 28/282 (9%)

Query: 89  KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGF 148
            L+LS++     +  +  L  L  L  LDL  NY    E+         +  L+ ++   
Sbjct: 62  LLNLSSN----VLYETLDLESLSTLRTLDLNNNYV--QELLV----GPSIETLHAAN-NN 110

Query: 149 FGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISS-PI 207
             ++           ++ L++N    +  L++ + G      + ++ L L    I +   
Sbjct: 111 ISRVSCSR--GQGKKNIYLANN---KITMLRDLDEGC----RSRVQYLDLKLNEIDTVNF 161

Query: 208 PHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKR 267
               A+  +L  L+L    +   +   +    KL  LDLS N L   +     +   +  
Sbjct: 162 AELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTW 218

Query: 268 LDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSM-GNFTRLYWLSLASNDFSGE 326
           + +  N+L   +  ++    +LE  +L  N F   T         R+  ++  +      
Sbjct: 219 ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277

Query: 327 LPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSH 368
                  + +L       C+           L  L      H
Sbjct: 278 QNEEECTVPTLGHYGAYCCEDLPA--PFADRLIALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  101 bits (255), Expect = 1e-23
 Identities = 58/307 (18%), Positives = 102/307 (33%), Gaps = 26/307 (8%)

Query: 530 NSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDN 589
           N  +I  ++ ++L   L     +   ++  LDL  N               L +++LS N
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAW-NVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 590 LLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTG 649
           +L       L + S+L+ LDL NN +       L     +  L   +N +   +      
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVSCSR-- 118

Query: 650 CGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTS--ELRYMEGMIYPFALVSYAALG 707
                 + I L+NN+ T  L      C + +Q ++    E+  +       +  +   L 
Sbjct: 119 --GQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 708 IYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHG 767
           +    +       + +       L  + LSSN+    +     +  G+  +SL NN L  
Sbjct: 176 LQYNFIYDVKGQVVFAK------LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 768 HILSCLGNLTGLESLDLSNNKFSGQIPQQLVD--LTFLEFFNVSNNNLTGPIPQGNQFPT 825
            I   L     LE  DL  N F     +               +   LTG   +    PT
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 826 FDKTSFN 832
                  
Sbjct: 288 LGHYGAY 294

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 95.8 bits (239), Expect = 1e-21
 Identities = 54/353 (15%), Positives = 103/353 (29%), Gaps = 74/353 (20%)

Query: 327 LPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKH 386
           +     N    +   +++      + S  ++   +K L+ S N  S  I        F  
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADL-APFTK 59

Query: 387 LEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHG 446
           LE L+LSSN L                         E  +       L  LDL+ N +  
Sbjct: 60  LELLNLSSNVLY------------------------ETLDLESLST-LRTLDLNNNYVQE 94

Query: 447 KVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFT----LDLSYNYLQGPLPV 502
                       +   L+ ++N +            +         + L+ N +      
Sbjct: 95  -------LLVGPSIETLHAANNNISRV---------SCSRGQGKKNIYLANNKIT----- 133

Query: 503 PPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDL 562
                             +        + ++ LDL  N +  +    L   SD L  L+L
Sbjct: 134 -----------------MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 563 QHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSW 622
           Q+N       Q   +   L  +DLS N L   +     + + + ++ L NN++       
Sbjct: 177 QYNFIYDVKGQVVFA--KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKA 232

Query: 623 LGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQ 675
           L   + L    L+ N  H      +       ++ +     +       +   
Sbjct: 233 LRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 90.4 bits (225), Expect = 8e-20
 Identities = 60/345 (17%), Positives = 118/345 (34%), Gaps = 71/345 (20%)

Query: 351 IPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQK 410
           I    +N  + K  + + ++        +   +  +++ L LS N LS  + A       
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQ-ALASLR-QSAWNVKELDLSGNPLSQISAADLA---- 55

Query: 411 FNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYL-NLSHNF 469
                                  LE+L+LS N ++             +   L  L    
Sbjct: 56  ----PFTK---------------LELLNLSSNVLY----------ETLDLESLSTLRT-- 84

Query: 470 LIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSS 529
                              LDL+ NY+Q  L    P  +    +NN+++ ++     +  
Sbjct: 85  -------------------LDLNNNYVQE-LL-VGPSIETLHAANNNIS-RVSC---SRG 119

Query: 530 NSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCG-SIPQTFLSGRSLMMIDLSD 588
              + + L+ N ++ L        S  +  LDL+ N+    +  +   S  +L  ++L  
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 589 NLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNT 648
           N +   +    V  + LK LDL +N+++        +   +  + L++NKL  +      
Sbjct: 179 NFIY-DVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLI---EKA 232

Query: 649 GCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEG 693
                 L   DL  N F       +F     +Q V    ++ + G
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 19/74 (25%), Positives = 31/74 (41%)

Query: 745 IPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLE 804
           I     N    ++  + ++SL   + S   +   ++ LDLS N  S      L   T LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 805 FFNVSNNNLTGPIP 818
             N+S+N L   + 
Sbjct: 62  LLNLSSNVLYETLD 75

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 27/193 (13%), Positives = 64/193 (33%), Gaps = 23/193 (11%)

Query: 626 LRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNT 685
                +  +  + L   +   +       ++ +DLS N  + ++ +     +  ++++N 
Sbjct: 9   GNRYKIEKVTDSSLKQAL--ASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNL 65

Query: 686 S--ELRYMEGMIYPFA-LVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFD 742
           S   L            L +   L + +  +     G           +  +  ++N   
Sbjct: 66  SSNVLY----ETLDLESLSTLRTLDLNNNYVQELLVGP---------SIETLHAANNNI- 111

Query: 743 GEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSG-QIPQQLVDLT 801
             +  S    +G + + LANN +        G  + ++ LDL  N+       +      
Sbjct: 112 SRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 802 FLEFFNVSNNNLT 814
            LE  N+  N + 
Sbjct: 170 TLEHLNLQYNFIY 182

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  121 bits (304), Expect = 2e-28
 Identities = 67/329 (20%), Positives = 109/329 (33%), Gaps = 51/329 (15%)

Query: 89  KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRL--SYLNLSSA 146
            L++  S L         L    H+  L +  N    + +P     L  L  S   L+S 
Sbjct: 44  VLNVGESGLTTL---PDCLPA--HITTLVIPDNNL--TSLPALPPELRTLEVSGNQLTS- 95

Query: 147 GFFGQIPSEILELSNLVSLDLSHNSYYNLIE------LKEPNLGNLVKKLTNLKELALGG 200
                +P     L  L            L        +    L +L      L+EL++  
Sbjct: 96  -----LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSD 150

Query: 201 VTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIG 260
             ++S +P   + L  L        +L   +P L   L +   L +S +N L  LPT   
Sbjct: 151 NQLAS-LPALPSELCKLW---AYNNQLT-SLPMLPSGLQE---LSVS-DNQLASLPTLPS 201

Query: 261 NLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLAS 320
               L +L    N L+  LPA       L++L +S NR     P        L  L ++ 
Sbjct: 202 E---LYKLWAYNNRLT-SLPALPSG---LKELIVSGNRLTS-LPVLPSE---LKELMVSG 250

Query: 321 NDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMF 380
           N  +  LP     L S   L +   + +  +P SL +L+    +    N  S        
Sbjct: 251 NRLT-SLPMLPSGLLS---LSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQ--- 302

Query: 381 LVNFKHLEHLSLSSNRLSLFTKAIFNTSQ 409
               + +      S  +  F  A  +  +
Sbjct: 303 --ALREITSAPGYSGPIIRFDMAGASAPR 329

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  117 bits (294), Expect = 2e-27
 Identities = 75/440 (17%), Positives = 119/440 (27%), Gaps = 100/440 (22%)

Query: 190 LTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFN 249
                 L +G   +++ +P  L   + +T L +    L   +P+L   L  L   ++S  
Sbjct: 39  NNGNAVLNVGESGLTT-LPDCL--PAHITTLVIPDNNLT-SLPALPPELRTL---EVS-G 90

Query: 250 NLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGN 309
           N L  LP     L  L         L             L +L +  N+     P     
Sbjct: 91  NQLTSLPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLT-SLPVLPPG 142

Query: 310 FTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHN 369
              L  LS++ N  +  LPA    L     L     + +S +P        L+ L  S N
Sbjct: 143 ---LQELSVSDNQLA-SLPALPSELCK---LWAYNNQLTS-LPMLPSG---LQELSVSDN 191

Query: 370 NFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLK 429
                  L         L  L   +NR                        L   P    
Sbjct: 192 Q------LASLPTLPSELYKLWAYNNR------------------------LTSLPALPS 221

Query: 430 NQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTL 489
               L+ L +S N++        +         L +S N L                   
Sbjct: 222 G---LKELIVSGNRLTS------LPVLPSELKELMVSGNRLTS----------------- 255

Query: 490 DLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQC 549
                     LP+ P       V  N LT ++P  + + S+    ++L  N LS      
Sbjct: 256 ----------LPMLPSGLLSLSVYRNQLT-RLPESLIHLSS-ETTVNLEGNPLSE-RTLQ 302

Query: 550 LDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLD 609
                           +F  +        R+L     + + L                  
Sbjct: 303 ALREITSAPGYSGPIIRFDMAGASAPRETRALH--LAAADWLVPAREGEPAPADRWH--M 358

Query: 610 LGNNQISGTFPSWLGTLREL 629
            G    +  F  +L  L E 
Sbjct: 359 FGQEDNADAFSLFLDRLSET 378

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  108 bits (271), Expect = 2e-24
 Identities = 75/397 (18%), Positives = 115/397 (28%), Gaps = 96/397 (24%)

Query: 238 LTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLN 297
                 L++   + L  LP  +     +  L I  N L+  LPA    L     LE+S N
Sbjct: 39  NNGNAVLNVG-ESGLTTLPDCLPA--HITTLVIPDNNLT-SLPALPPEL---RTLEVSGN 91

Query: 298 RFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRN 357
           +     P        L   S         LPA    L  L    I   + +S +P     
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLT----HLPALPSGLCKL---WIFGNQLTS-LPVLPPG 142

Query: 358 LAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLR 417
           L   + L  S N       L         L  L   +N+L+                   
Sbjct: 143 L---QELSVSDNQ------LASLPALPSELCKLWAYNNQLT------------------- 174

Query: 418 SCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHP 477
                  P        L+ L +S N++        +         L   +N L       
Sbjct: 175 -----SLPMLPSG---LQELSVSDNQLAS------LPTLPSELYKLWAYNNRLT------ 214

Query: 478 MFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDL 537
                                 LP  P   K  +VS N LT  +P         L+ L +
Sbjct: 215 ---------------------SLPALPSGLKELIVSGNRLTS-LPVLPSE----LKELMV 248

Query: 538 SYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPR 597
           S N L+ L P         L  L +  N+    +P++ +   S   ++L  N L  R  +
Sbjct: 249 SGNRLTSL-PMLPSG----LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302

Query: 598 SLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLIL 634
           +L   +S         +      S     R L++   
Sbjct: 303 ALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA 339

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 94.2 bits (234), Expect = 6e-20
 Identities = 73/390 (18%), Positives = 125/390 (32%), Gaps = 81/390 (20%)

Query: 434 LEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFT-LDLS 492
             VL++  + +   +P  L      + + L +  N L          P        L++S
Sbjct: 42  NAVLNVGESGLT-TLPDCL----PAHITTLVIPDNNL-------TSLPALPPELRTLEVS 89

Query: 493 YNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDN 552
            N L   LPV PP      + +N LT  +P         L  L +  N L+ L P     
Sbjct: 90  GNQLTS-LPVLPPGLLELSIFSNPLT-HLPALPSG----LCKLWIFGNQLTSL-PVLPPG 142

Query: 553 FSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGN 612
               L  L +  N+   S+P        L      +N L   +P      S L+ L + +
Sbjct: 143 ----LQELSVSDNQL-ASLPALPSELCKL---WAYNNQLT-SLPMLP---SGLQELSVSD 190

Query: 613 NQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSK 672
           NQ++ + P+    L +L     +   L  +            L+ + +S NR T  LP  
Sbjct: 191 NQLA-SLPTLPSELYKLWAYNNRLTSLPALP---------SGLKELIVSGNRLTS-LPV- 238

Query: 673 YFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLT 732
                        SEL+                       L +S   ++ S   +P+ L 
Sbjct: 239 -----------LPSELK----------------------ELMVSGN-RLTSLPMLPSGLL 264

Query: 733 GVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQ 792
            + +  N+    +P S+ +L     ++L  N L    L  L  +T          +F   
Sbjct: 265 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMA 323

Query: 793 IPQQLVDLTFLEFFNVSNNNLTGPIPQGNQ 822
                 +   L     + + L         
Sbjct: 324 GASAPRETRALH--LAAADWLVPAREGEPA 351

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 93.4 bits (232), Expect = 9e-20
 Identities = 55/275 (20%), Positives = 85/275 (30%), Gaps = 40/275 (14%)

Query: 89  KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGF 148
           KL +  + L               L+ L ++ N    + +P     L +L   N      
Sbjct: 125 KLWIFGNQLTSLPVL------PPGLQELSVSDNQL--ASLPALPSELCKLWAYNNQ---- 172

Query: 149 FGQIPSEILELSNLVSLDLSHN-------SYYNLIELKEPN--LGNLVKKLTNLKELALG 199
              +P      S L  L +S N           L +L   N  L +L    + LKEL + 
Sbjct: 173 LTSLPMLP---SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVS 229

Query: 200 GVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSI 259
           G  ++S +P      S L  L +SG  L   +P L   L  L    +   N L  LP S+
Sbjct: 230 GNRLTS-LPVLP---SELKELMVSGNRLT-SLPMLPSGLLSL---SVY-RNQLTRLPESL 280

Query: 260 GNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLA 319
            +L     +++  N LS E          +                          L LA
Sbjct: 281 IHLSSETTVNLEGNPLS-ERTLQALR--EITSAPGYSGPIIRFDMAGASAPRETRALHLA 337

Query: 320 SNDF----SGELPASFGNLRSLEGLDISECKFSSQ 350
           + D+        PA           D ++      
Sbjct: 338 AADWLVPAREGEPAPADRWHMFGQEDNADAFSLFL 372

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 91.9 bits (228), Expect = 2e-19
 Identities = 79/364 (21%), Positives = 128/364 (35%), Gaps = 75/364 (20%)

Query: 459 NFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLT 518
             + LN+  + L      P   P +    TL +  N L   LP  PP+ +   VS N LT
Sbjct: 41  GNAVLNVGESGLTTL---PDCLPAHIT--TLVIPDNNLTS-LPALPPELRTLEVSGNQLT 94

Query: 519 GKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSG 578
             +P         L I      +L  L           L  L +  N+   S+P      
Sbjct: 95  -SLPVLPPGLLE-LSIFSNPLTHLPALPSG--------LCKLWIFGNQLT-SLPVLPPGL 143

Query: 579 RSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNK 638
           + L    +SDN L   +P      S L  L   NNQ++ + P     L+EL+   +  N+
Sbjct: 144 QEL---SVSDNQLA-SLPALP---SELCKLWAYNNQLT-SLPMLPSGLQELS---VSDNQ 192

Query: 639 LHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPF 698
           L  +   P       EL  +   NNR T  LP+              S L+         
Sbjct: 193 LASL---PT---LPSELYKLWAYNNRLT-SLPA------------LPSGLK--------- 224

Query: 699 ALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVL 758
                         L +S   ++ S   +P+ L  +++S NR    +P   + L     L
Sbjct: 225 -------------ELIVSGN-RLTSLPVLPSELKELMVSGNRLT-SLPMLPSGL---LSL 266

Query: 759 SLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIP 818
           S+  N L   +   L +L+   +++L  N  S +  Q L ++T    ++           
Sbjct: 267 SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGA 325

Query: 819 QGNQ 822
              +
Sbjct: 326 SAPR 329

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 91.5 bits (227), Expect = 3e-19
 Identities = 68/348 (19%), Positives = 123/348 (35%), Gaps = 73/348 (20%)

Query: 488 TLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLP 547
            L++  + L       P      ++ +N+LT  +P         L  L++S N L+ L P
Sbjct: 44  VLNVGESGLTTLPDCLPAHITTLVIPDNNLT-SLPALPPE----LRTLEVSGNQLTSL-P 97

Query: 548 QCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKF 607
                    LSI                     L  + +  N L   +P        L+ 
Sbjct: 98  VLPPGLL-ELSIFSNPLTHLPALPS-------GLCKLWIFGNQLT-SLPVLPPG---LQE 145

Query: 608 LDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTG 667
           L + +NQ++ + P+    L +L      +N+L  +   P        L+ + +S+N+   
Sbjct: 146 LSVSDNQLA-SLPALPSELCKLWAY---NNQLTSLPMLP------SGLQELSVSDNQLA- 194

Query: 668 KLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKV 727
            LP+              SEL                        L   N  ++ S   +
Sbjct: 195 SLPT------------LPSELY----------------------KLWAYNN-RLTSLPAL 219

Query: 728 PNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNN 787
           P+ L  +I+S NR    +P   + L   + L ++ N L    L  L   +GL SL +  N
Sbjct: 220 PSGLKELIVSGNRL-TSLPVLPSEL---KELMVSGNRLT--SLPML--PSGLLSLSVYRN 271

Query: 788 KFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNL 835
           + + ++P+ L+ L+     N+  N L+    Q  +  T         +
Sbjct: 272 QLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPII 318

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 85.3 bits (211), Expect = 3e-17
 Identities = 61/298 (20%), Positives = 102/298 (34%), Gaps = 76/298 (25%)

Query: 530 NSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDN 589
           N   +L++  + L+ L P   D    H++ L +  N    S+P      R+L   ++S N
Sbjct: 40  NGNAVLNVGESGLTTL-P---DCLPAHITTLVIPDNNL-TSLPALPPELRTL---EVSGN 91

Query: 590 LLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTG 649
            L   +P        L         +    P+    L +L    +  N+L  +   P   
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHL----PALPSGLCKLW---IFGNQLTSLPVLP--- 140

Query: 650 CGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIY 709
              P L+ + +S+N+    LP+                         P  L     L  Y
Sbjct: 141 ---PGLQELSVSDNQLA-SLPA------------------------LPSELCK---LWAY 169

Query: 710 DYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHI 769
           +  LT        S   +P+ L  + +S N+    +PT  + L  L   +    SL    
Sbjct: 170 NNQLT--------SLPMLPSGLQELSVSDNQL-ASLPTLPSELYKLWAYNNRLTSLPALP 220

Query: 770 -----LSCLGN--------LTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLT 814
                L   GN         + L+ L +S N+ +  +P     L  L   +V  N LT
Sbjct: 221 SGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT-SLPMLPSGLLSL---SVYRNQLT 274

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 8/87 (9%)

Query: 728 PNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNN 787
            N    + +  +     +P  +     +  L + +N+L   + +    L    +L++S N
Sbjct: 39  NNGNAVLNVGESGL-TTLPDCL--PAHITTLVIPDNNLT-SLPALPPELR---TLEVSGN 91

Query: 788 KFSGQIPQQLVDLTFLEFFNVSNNNLT 814
           + +  +P     L  L  F+    +L 
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLP 117

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  112 bits (281), Expect = 3e-26
 Identities = 81/432 (18%), Positives = 136/432 (31%), Gaps = 59/432 (13%)

Query: 215 SSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSI-GNLDCLKRLDISWN 273
           + +  + LS   +     +    L  L +L +        +  +    L  L  L + +N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 274 ELSGELPASI-GNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPA-SF 331
           +   +L       LA+LE L L+                               L    F
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLD-----------------------GAVLSGNFF 125

Query: 332 GNLRSLEGLDISECKFSSQIPSSL-RNLAQLKFLEFSHNNFSGPIDLDMFL-VNFKHLEH 389
             L SLE L + +       P+S   N+ +   L+ + N     I  +  L    KH   
Sbjct: 126 KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS-ICEEDLLNFQGKHFTL 184

Query: 390 LSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVP 449
           L LSS  L    +      +  N     S               +  LDLS N     + 
Sbjct: 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTS---------------ITTLDLSGNGFKESMA 229

Query: 450 KWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKH 509
           K          +   +    L   Y     F         + ++  L           K 
Sbjct: 230 KRF----FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL------EASGVKT 279

Query: 510 YLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCG 569
             +S + +   +   + +    LE L L+ N ++ +        + HL  L+L  N   G
Sbjct: 280 CDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT-HLLKLNLSQNFL-G 336

Query: 570 SIPQ-TFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRE 628
           SI    F +   L ++DLS N ++    +S +   +LK L L  NQ+          L  
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTS 396

Query: 629 LNVLILKSNKLH 640
           L  + L +N   
Sbjct: 397 LQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  110 bits (277), Expect = 1e-25
 Identities = 79/391 (20%), Positives = 126/391 (32%), Gaps = 25/391 (6%)

Query: 287 ASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPA-SFGNLRSLEGLDISEC 345
           A +  ++LSLN        S      L +L +        +   +F  L SL  L +   
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 346 KFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRL-SLFTKAI 404
           +F      +   LA L+ L  +  N  G +    F      LE L L  N +  +   + 
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 405 FNTSQKFNFVGLRSCNLNEFPN----FLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNF 460
           F   ++F+ + L    +           + +H   +L LS   +      WL      N 
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKH-FTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 461 ------SYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSN 514
                 + L+LS N          FF          L  +                   N
Sbjct: 209 FKNTSITTLDLSGNGFKES-MAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP-DN 266

Query: 515 NSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQT 574
            +  G         ++ ++  DLS + +  LL     +F+  L  L L  N+        
Sbjct: 267 FTFKGL-------EASGVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQNEINKIDDNA 318

Query: 575 FLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLIL 634
           F     L+ ++LS N L     R   N   L+ LDL  N I          L  L  L L
Sbjct: 319 FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378

Query: 635 KSNKLHGMIREPNTGCGFPELRIIDLSNNRF 665
            +N+L  +            L+ I L  N +
Sbjct: 379 DTNQLKSV--PDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 98.3 bits (245), Expect = 1e-21
 Identities = 78/389 (20%), Positives = 143/389 (36%), Gaps = 44/389 (11%)

Query: 111 VHLEWLDLAFNYFICSEIPPEII-NLSRLSYLNLSSAGFFGQIPSEILE-LSNLVSLDLS 168
            H+ ++DL+ N    +E+       L  L +L +        I +     LS+L+ L L 
Sbjct: 30  AHVNYVDLSLNSI--AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87

Query: 169 HNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTI-SSPIPH-SLANLSSLTLLSLSGCE 226
           +N     ++L+          L NL+ L L    +  + +       L+SL +L L    
Sbjct: 88  YN---QFLQLET----GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN 140

Query: 227 LRGRIP-SLLGNLTKLMYLDLSFNNL----------LGELPTSIGNLDCLKRLDISWNEL 275
           ++   P S   N+ +   LDL+FN +                ++  L  +   D++   L
Sbjct: 141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL 200

Query: 276 SGELPASIGNLASLEQLELSLNRFRGKTP---HSMGNFTRLYWL----------SLASND 322
             E   +     S+  L+LS N F+             T++  L          S    +
Sbjct: 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260

Query: 323 FSGELPASFGNLR--SLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMF 380
           F      +F  L    ++  D+S+ K  + + S   +   L+ L  + N  +  ID + F
Sbjct: 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAF 319

Query: 381 LVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPN-FLKNQHYLEVLDL 439
                HL  L+LS N L      +F    K   + L   ++    +        L+ L L
Sbjct: 320 -WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378

Query: 440 SCNKIHGKVPKWLIEPSMQNFSYLNLSHN 468
             N++   VP  + +  + +   + L  N
Sbjct: 379 DTNQLK-SVPDGIFD-RLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 89.8 bits (223), Expect = 7e-19
 Identities = 72/372 (19%), Positives = 118/372 (31%), Gaps = 66/372 (17%)

Query: 488 TLDLSYNYLQGPLPVPP------PQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNN 541
            +DLS N +     +           +   V   +    I        +SL IL L YN 
Sbjct: 34  YVDLSLNSIAE---LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 542 LSGLLPQCLDNFSDHLSILDLQHNKFCGSI--PQTFLSGRSLMMIDLSDNLLQGRIPRSL 599
              L     +  + +L +L L      G++     F    SL M+ L DN ++   P S 
Sbjct: 91  FLQLETGAFNGLA-NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 600 -VNCSSLKFLDLGNNQIS----GTFPSWLGTLRELNVLILKSNKLHGM--IREPNTGCGF 652
            +N      LDL  N++         ++ G      +L L S  L  M         CG 
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGK--HFTLLRLSSITLQDMNEYWLGWEKCGN 207

Query: 653 P----ELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGI 708
           P     +  +DLS N F   +  ++F      +             I    L +   +G 
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK-------------IQSLILSNSYNMGS 254

Query: 709 YDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSI-ANLKGLQVLSLANN---S 764
                   +           + +    LS ++    +  S+ ++   L+ L+LA N    
Sbjct: 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI-FALLKSVFSHFTDLEQLTLAQNEINK 313

Query: 765 LHGHILSCLGN---------------------LTGLESLDLSNNKFSGQIPQQLVD-LTF 802
           +  +    L +                     L  LE LDLS N     +  Q    L  
Sbjct: 314 IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPN 372

Query: 803 LEFFNVSNNNLT 814
           L+   +  N L 
Sbjct: 373 LKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 89.0 bits (221), Expect = 1e-18
 Identities = 71/340 (20%), Positives = 118/340 (34%), Gaps = 50/340 (14%)

Query: 89  KLDLSNSCLQGFINSSSGLF-KLVHLEWLDLAFNYFICSEIPPEI-INLSRLSYLNLSS- 145
            L L  +         +G F  L +LE L L       + +       L+ L  L L   
Sbjct: 83  ILKLDYNQFLQL---ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 146 -------AGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKK------LTN 192
                  A FF         +     LDL+ N    +  + E +L N   K      L++
Sbjct: 140 NIKKIQPASFFLN-------MRRFHVLDLTFN---KVKSICEEDLLNFQGKHFTLLRLSS 189

Query: 193 LKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRG-------------RIPSLLGNLT 239
           +    +    +      +    +S+T L LSG   +              +I SL+ + +
Sbjct: 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249

Query: 240 KLMYLDLSFNNLLGELPTSIGNLDC--LKRLDISWNELSGELPASI-GNLASLEQLELSL 296
             M       N       +   L+   +K  D+S +++   L  S+  +   LEQL L+ 
Sbjct: 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQ 308

Query: 297 NRFRGKTPHSMGNFTRLYWLSLASNDFSGELPA-SFGNLRSLEGLDISECKFSSQIPSSL 355
           N       ++    T L  L+L+ N     + +  F NL  LE LD+S     +    S 
Sbjct: 309 NEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSF 367

Query: 356 RNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSN 395
             L  LK L    N     +   +F      L+ + L +N
Sbjct: 368 LGLPNLKELALDTNQLKS-VPDGIF-DRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 67.5 bits (165), Expect = 9e-12
 Identities = 52/286 (18%), Positives = 98/286 (34%), Gaps = 31/286 (10%)

Query: 556 HLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPR-SLVNCSSLKFLDLGNNQ 614
           H++ +DL  N        +F   + L  + +        I   +    SSL  L L  NQ
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 615 ISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYF 674
                      L  L VL L    L G +   N       L ++ L +N      P+ +F
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 675 QCWNAMQVVNTSE--LRYM-EGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNF- 730
                  V++ +   ++ + E  +  F    +  L +   +L   N+   + ++K  N  
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW-LGWEKCGNPF 209

Query: 731 ----LTGVILSSNRFDGEIPTSIANLKGL-QVLSLANNSLHGHILSCLGN---------- 775
               +T + LS N F   +     +     ++ SL  ++ +    S              
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269

Query: 776 ----LTGLESLDLSNNKFS---GQIPQQLVDLTFLEFFNVSNNNLT 814
                +G+++ DLS +K       +     DL  L    ++ N + 
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQL---TLAQNEIN 312

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 59/237 (24%), Positives = 94/237 (39%), Gaps = 31/237 (13%)

Query: 86  HVIKLDLSNSCLQ-----GFINSSSGLF-KLVHLEWLDLAFNYF--ICSEIPPEIINLSR 137
           H   L LS+  LQ            G   K   +  LDL+ N F    ++   + I  ++
Sbjct: 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK 240

Query: 138 LSYLNLSSAGFFGQIPSEI------------LELSNLVSLDLSHNSYYNLIELKEPNLGN 185
           +  L LS++   G                  LE S + + DLS +    +  L +    +
Sbjct: 241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK---IFALLK----S 293

Query: 186 LVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLD 245
           +    T+L++L L    I+    ++   L+ L  L+LS   L      +  NL KL  LD
Sbjct: 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353

Query: 246 LSFNNLLGELPTSI-GNLDCLKRLDISWNELSGELPASI-GNLASLEQLELSLNRFR 300
           LS  N +  L       L  LK L +  N+L   +P  I   L SL+++ L  N + 
Sbjct: 354 LS-YNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 42/237 (17%), Positives = 78/237 (32%), Gaps = 52/237 (21%)

Query: 603 SSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSN 662
           + + ++DL  N I+    +    L++L  L ++      +I   NT  G   L I+ L  
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVI-RNNTFRGLSSLIILKLDY 88

Query: 663 NRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMM 722
           N+F  +L +  F           + L                        LT++      
Sbjct: 89  NQFL-QLETGAFN--------GLANLEV----------------------LTLTQ----- 112

Query: 723 SYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCL-GNLTGLES 781
                   L G +LS N F          L  L++L L +N++     +    N+     
Sbjct: 113 ------CNLDGAVLSGNFFK--------PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV 158

Query: 782 LDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLC 838
           LDL+ NK      + L++     F  +  +++T               +   N  + 
Sbjct: 159 LDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSIT 215

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  106 bits (266), Expect = 4e-25
 Identities = 62/308 (20%), Positives = 103/308 (33%), Gaps = 34/308 (11%)

Query: 191 TNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNN 250
            +   L L    I+        NL +L  L L   ++    P     L KL  L LS  N
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS-KN 110

Query: 251 LLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNF 310
            L ELP  +     L+ L +  NE++    +    L  +  +EL  N             
Sbjct: 111 QLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP------------ 156

Query: 311 TRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNN 370
                  L S+        +F  ++ L  + I++   ++ IP  L     L  L    N 
Sbjct: 157 -------LKSSGIE---NGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNK 203

Query: 371 FSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKN 430
            +  +D         +L  L LS N +S         +     + L +  L + P  L +
Sbjct: 204 ITK-VDAASL-KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 261

Query: 431 QHYLEVLDLSCNKIH----GKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDG 486
             Y++V+ L  N I                  ++S ++L  N +  +   P  F   Y  
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321

Query: 487 FTLDLSYN 494
             + L   
Sbjct: 322 AAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  105 bits (263), Expect = 1e-24
 Identities = 64/363 (17%), Positives = 115/363 (31%), Gaps = 91/363 (25%)

Query: 310 FTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHN 369
                 L L +N  +      F NL++L  L +   K S   P +   L +L+ L  S N
Sbjct: 51  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110

Query: 370 NFSG-PIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFL 428
                P  +       K L+ L +  N ++   K++FN        GL            
Sbjct: 111 QLKELPEKM------PKTLQELRVHENEITKVRKSVFN--------GLNQ---------- 146

Query: 429 KNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYL-NLSHNFLIGFYQHPMFFPRNYDGF 487
                + V++L  N +        IE     F  +  LS+                    
Sbjct: 147 -----MIVVELGTNPLKSSG----IENGA--FQGMKKLSY-------------------- 175

Query: 488 TLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLP 547
            + ++   +               +                  SL  L L  N ++ +  
Sbjct: 176 -IRIADTNITT-------------IPQGLPP------------SLTELHLDGNKITKVDA 209

Query: 548 QCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKF 607
             L   + +L+ L L  N        +  +   L  + L++N L  ++P  L +   ++ 
Sbjct: 210 ASLKGLN-NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQV 267

Query: 608 LDLGNNQIS----GTF--PSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLS 661
           + L NN IS      F  P +       + + L SN +     +P+T         + L 
Sbjct: 268 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327

Query: 662 NNR 664
           N +
Sbjct: 328 NYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 93.1 bits (232), Expect = 1e-20
 Identities = 62/318 (19%), Positives = 104/318 (32%), Gaps = 55/318 (17%)

Query: 90  LDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFF 149
           LDL N+ +            L +L  L L  N    S+I P                 F 
Sbjct: 57  LDLQNNKITEI--KDGDFKNLKNLHTLILINNKI--SKISPGA---------------FA 97

Query: 150 GQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPH 209
                    L  L  L LS N    L EL    +         L+EL +    I+     
Sbjct: 98  P--------LVKLERLYLSKN---QLKEL-PEKM------PKTLQELRVHENEITKVRKS 139

Query: 210 SLANLSSLTLLSLSGCELR-GRIPS-LLGNLTKLMYLDLSFNNLLGELPTSI--GNLDCL 265
               L+ + ++ L    L+   I +     + KL Y+ ++  N+     T+I  G    L
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-----TTIPQGLPPSL 194

Query: 266 KRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSG 325
             L +  N+++    AS+  L +L +L LS N        S+ N   L  L L +N    
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV- 253

Query: 326 ELPASFGNLRSLEGLDISECKFSS------QIPSSLRNLAQLKFLEFSHNNFS-GPIDLD 378
           ++P    + + ++ + +     S+        P      A    +    N      I   
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313

Query: 379 MFLVNFKHLEHLSLSSNR 396
            F         + L + +
Sbjct: 314 TFR-CVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 89.7 bits (223), Expect = 2e-19
 Identities = 64/315 (20%), Positives = 109/315 (34%), Gaps = 47/315 (14%)

Query: 513 SNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIP 572
           S+  L  K+P  +        +LDL  N ++ +      N   +L  L L +NK     P
Sbjct: 39  SDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKISKISP 93

Query: 573 QTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVL 632
             F     L  + LS N L+  +P  +    +L+ L +  N+I+    S    L ++ V+
Sbjct: 94  GAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVV 150

Query: 633 ILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYME 692
            L +N L     E     G  +L  I +++   T  +P             + +EL    
Sbjct: 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPP--------SLTELH--- 198

Query: 693 GMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANL 752
                          +    +T  +     S   + N L  + LS N        S+AN 
Sbjct: 199 ---------------LDGNKITKVDAA---SLKGLNN-LAKLGLSFNSISAVDNGSLANT 239

Query: 753 KGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSG------QIPQQLVDLTFLEFF 806
             L+ L L NN L   +   L +   ++ + L NN  S         P            
Sbjct: 240 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 298

Query: 807 NVSNNNLT-GPIPQG 820
           ++ +N +    I   
Sbjct: 299 SLFSNPVQYWEIQPS 313

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 80.0 bits (198), Expect = 3e-16
 Identities = 45/255 (17%), Positives = 90/255 (35%), Gaps = 37/255 (14%)

Query: 82  ENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEI-INLSRLSY 140
                + +L LS + L+        + K   L+ L +  N    +++   +   L+++  
Sbjct: 97  APLVKLERLYLSKNQLKEL---PEKMPK--TLQELRVHENEI--TKVRKSVFNGLNQMIV 149

Query: 141 LNLSSAGFFGQIPSEILE------LSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLK 194
           + L +      + S  +E      +  L  + ++     N+  +    L        +L 
Sbjct: 150 VELGT----NPLKSSGIENGAFQGMKKLSYIRIADT---NITTI-PQGL------PPSLT 195

Query: 195 ELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGE 254
           EL L G  I+     SL  L++L  L LS   +       L N   L  L L+ N L+ +
Sbjct: 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K 254

Query: 255 LPTSIGNLDCLKRLDISWNELSG------ELPASIGNLASLEQLELSLNRFRGKT--PHS 306
           +P  + +   ++ + +  N +S         P      AS   + L  N  +     P +
Sbjct: 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314

Query: 307 MGNFTRLYWLSLASN 321
                    + L + 
Sbjct: 315 FRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.5 bits (181), Expect = 5e-14
 Identities = 50/280 (17%), Positives = 97/280 (34%), Gaps = 61/280 (21%)

Query: 513 SNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSI- 571
           S N L  ++P        +L+ L +  N ++ +     +  +  + +++L  N    S  
Sbjct: 108 SKNQLK-ELPE---KMPKTLQELRVHENEITKVRKSVFNGLN-QMIVVELGTNPLKSSGI 162

Query: 572 -PQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELN 630
               F   + L  I ++D  +   IP+ L    SL  L L  N+I+    + L  L  L 
Sbjct: 163 ENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLA 219

Query: 631 VLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRY 690
            L L  N +  +  +  +    P LR + L+NN+   K+P               ++ +Y
Sbjct: 220 KLGLSFNSISAV--DNGSLANTPHLRELHLNNNKLV-KVPG------------GLADHKY 264

Query: 691 MEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIA 750
           ++                    + + N           N ++ +   SN F    P    
Sbjct: 265 IQ-------------------VVYLHN-----------NNISAI--GSNDFCP--PGYNT 290

Query: 751 NLKGLQVLSLANNSLHGHILS--CLGNLTGLESLDLSNNK 788
                  +SL +N +    +       +    ++ L N K
Sbjct: 291 KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  105 bits (265), Expect = 4e-24
 Identities = 65/262 (24%), Positives = 107/262 (40%), Gaps = 17/262 (6%)

Query: 136 SRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKE 195
           ++ S +  +  G   ++P  I   SN   L+L  N   N+  ++     +L     +L+ 
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMEN---NIQMIQADTFRHL----HHLEV 103

Query: 196 LALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGEL 255
           L LG  +I      +   L+SL  L L    L          L+KL  L L  NN +  +
Sbjct: 104 LQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR-NNPIESI 162

Query: 256 PTSI-GNLDCLKRLDIS-WNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRL 313
           P+     +  L RLD+    +L      +   L +L+ L L +   +     ++     L
Sbjct: 163 PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK--DMPNLTPLVGL 220

Query: 314 YWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSG 373
             L ++ N F    P SF  L SL+ L +   + S    ++   LA L  L  +HNN S 
Sbjct: 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280

Query: 374 PIDLDMFLVNFKHLEHLSLSSN 395
            +  D+F    ++L  L L  N
Sbjct: 281 -LPHDLF-TPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 95.2 bits (237), Expect = 1e-20
 Identities = 56/235 (23%), Positives = 91/235 (38%), Gaps = 15/235 (6%)

Query: 112 HLEWLDLAFNYFICSEIPPEI-INLSRLSYLNLSSAGFFGQIPSEILE-LSNLVSLDLSH 169
           +  +L+L  N      I  +   +L  L  L L       QI       L++L +L+L  
Sbjct: 76  NTRYLNLMENNI--QMIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFD 132

Query: 170 NSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRG 229
           N    L  +       L    + L+EL L    I S   ++   + SL  L L   +   
Sbjct: 133 N---WLTVIPSGAFEYL----SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE 185

Query: 230 RIPS-LLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLAS 288
            I       L  L YL+L     + ++P  +  L  L+ L++S N      P S   L+S
Sbjct: 186 YISEGAFEGLFNLKYLNLG-MCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSS 243

Query: 289 LEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDIS 343
           L++L +  ++      ++      L  L+LA N+ S      F  LR L  L + 
Sbjct: 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 87.5 bits (217), Expect = 3e-18
 Identities = 56/294 (19%), Positives = 101/294 (34%), Gaps = 47/294 (15%)

Query: 526 CNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMID 585
           C+ SN    +  +   LS + PQ       +   L+L  N        TF     L ++ 
Sbjct: 50  CSCSNQFSKVVCTRRGLSEV-PQ---GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQ 105

Query: 586 LSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIRE 645
           L  N ++     +    +SL  L+L +N ++         L +L  L L++N +  +   
Sbjct: 106 LGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI--P 163

Query: 646 PNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAA 705
                  P L  +DL   +    +    F+            L+Y               
Sbjct: 164 SYAFNRVPSLMRLDLGELKKLEYISEGAFE--------GLFNLKY--------------- 200

Query: 706 LGIYDYSLTMSNKGQMMSYDKVPNF-----LTGVILSSNRFDGEIPTSIANLKGLQVLSL 760
           L +   ++             +PN      L  + +S N F    P S   L  L+ L +
Sbjct: 201 LNLGMCNIKD-----------MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249

Query: 761 ANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVD-LTFLEFFNVSNNNL 813
            N+ +     +    L  L  L+L++N  S  +P  L   L +L   ++ +N  
Sbjct: 250 MNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.1 bits (203), Expect = 2e-16
 Identities = 51/188 (27%), Positives = 73/188 (38%), Gaps = 19/188 (10%)

Query: 90  LDLSNSCLQGFINSSSGLFK-LVHLEWLDLAFNYFICSEIPPEI-INLSRLSYLNLSSAG 147
           L+L ++ L       SG F+ L  L  L L  N      IP      +  L  L+L    
Sbjct: 128 LELFDNWLTVI---PSGAFEYLSKLRELWLRNNPI--ESIPSYAFNRVPSLMRLDLGELK 182

Query: 148 FFGQIPSEILE-LSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSP 206
               I     E L NL  L+L      N+ ++  PNL  L      L+EL + G      
Sbjct: 183 KLEYISEGAFEGLFNLKYLNLGMC---NIKDM--PNLTPL----VGLEELEMSGNHFPEI 233

Query: 207 IPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSI-GNLDCL 265
            P S   LSSL  L +   ++     +    L  L+ L+L+ +N L  LP  +   L  L
Sbjct: 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA-HNNLSSLPHDLFTPLRYL 292

Query: 266 KRLDISWN 273
             L +  N
Sbjct: 293 VELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 69.4 bits (170), Expect = 2e-12
 Identities = 54/273 (19%), Positives = 94/273 (34%), Gaps = 42/273 (15%)

Query: 386 HLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFP-NFLKNQHYLEVLDLSCNKI 444
               +  +   LS   + I + ++  N   L   N+     +  ++ H+LEVL L  N I
Sbjct: 55  QFSKVVCTRRGLSEVPQGIPSNTRYLN---LMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 445 HGKVPKWLIEP----SMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFT----LDLSYNYL 496
                   IE      + + + L L  N+L         F    +  +    L L  N +
Sbjct: 112 R------QIEVGAFNGLASLNTLELFDNWLTVI--PSGAF----EYLSKLRELWLRNNPI 159

Query: 497 QGPLPVPP------PQTKH-YLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQC 549
           +    +P       P      L     L   I         +L+ L+L   N+  +    
Sbjct: 160 ES---IPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIKDM---- 211

Query: 550 LDNFSD--HLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKF 607
             N +    L  L++  N F    P +F    SL  + + ++ +      +    +SL  
Sbjct: 212 -PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270

Query: 608 LDLGNNQISGTFPSWLGTLRELNVLILKSNKLH 640
           L+L +N +S         LR L  L L  N  +
Sbjct: 271 LNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 4/87 (4%)

Query: 734 VILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQI 793
           V+ +      E+P  I      + L+L  N++         +L  LE L L  N      
Sbjct: 59  VVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE 115

Query: 794 PQQLVDLTFLEFFNVSNNNLTGPIPQG 820
                 L  L    + +N LT  IP G
Sbjct: 116 VGAFNGLASLNTLELFDNWLTV-IPSG 141

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  106 bits (266), Expect = 5e-24
 Identities = 88/467 (18%), Positives = 169/467 (36%), Gaps = 31/467 (6%)

Query: 191 TNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNN 250
              K L+L   +IS      ++ LS L +L LS   +R     +      L YLD+S +N
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS-HN 110

Query: 251 LLGELPTSIGNLDCLKRLDISWNEL-SGELPASIGNLASLEQLELSLNRFRGKTPHSMGN 309
            L  +      +  L+ LD+S+N+     +    GNL  L  L LS  +FR +       
Sbjct: 111 RLQNISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVA 167

Query: 310 FTRLYW--LSLASNDFSGELPASF--GNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLE 365
              L    L L S    G    S    N   L  +      FS Q+  S+  L  L+   
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227

Query: 366 FSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFN-----FVGLRSCN 420
              N+ +    +       +    L+++   +    K      Q F      ++ + +  
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287

Query: 421 LNEFPNFLKNQHY------LEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFY 474
           + E  +  +  +       L +  +          K  +       +   LS +     +
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIH 345

Query: 475 QHPMFFPRNYDGFTLDLSYNYLQG-PLPVPP--PQTKHYLVSNNSLTG-KIPFWICNSSN 530
                 P ++    L+ + N              + +  ++  N L        +  + +
Sbjct: 346 MVCPPSPSSFT--FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS 403

Query: 531 SLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNL 590
           SLE LD+S N+L+         +++ + +L+L  N   GS+ +       + ++DL +N 
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNR 461

Query: 591 LQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSN 637
           +   IP+ + +  +L+ L++ +NQ+          L  L  + L  N
Sbjct: 462 IM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 98.0 bits (244), Expect = 3e-21
 Identities = 97/517 (18%), Positives = 181/517 (35%), Gaps = 77/517 (14%)

Query: 112 HLEWLDLAFNYFICSEIPPEII-NLSRLSYLNLSSAGFFGQIPSEILE-LSNLVSLDLSH 169
             + L L+ N    SE+    I  LS L  L LS       +   +     +L  LD+SH
Sbjct: 53  RTKALSLSQNSI--SELRMPDISFLSELRVLRLSHNRI-RSLDFHVFLFNQDLEYLDVSH 109

Query: 170 NSYYNLIELKEPNLGNL-VKKLTNLKELALGGVTISS-PIPHSLANLSSLTLLSLSGCEL 227
           N            L N+    + +L+ L L        P+     NL+ LT L LS  + 
Sbjct: 110 N-----------RLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158

Query: 228 RGRIPSLLGNLTKLMYLDLSFNNL-LGELPTSIGNLDCLKRLDISWNELSGELPASIGNL 286
           R ++  L      L  + L   +  +    T    +     L + ++  S        ++
Sbjct: 159 R-QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSV 217

Query: 287 ASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECK 346
            +L  L+LS  +       +  N  RL             L  +  ++ +     +   +
Sbjct: 218 NALGHLQLSNIKL------NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271

Query: 347 FSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFN 406
           F             +++L   +   +  ID + F  +   L+ L +   +  +F  +   
Sbjct: 272 FF--------WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEA 323

Query: 407 TSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLS 466
               F                      + +  LS +         +  PS  +F++LN +
Sbjct: 324 LYSVFA--------------------EMNIKMLSISDT--PFIHMVCPPSPSSFTFLNFT 361

Query: 467 HNFLIGFYQHPMFFPRNYDGFT----LDLSYNYLQ-----GPLPVPPPQTKHYLVSNNSL 517
            N             +          L L  N L+       +       +   VS NSL
Sbjct: 362 QNVFTDSV------FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL 415

Query: 518 TGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLS 577
                   C  + S+ +L+LS N L+G + +CL      + +LDL +N+   SIP+    
Sbjct: 416 NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL---PPKVKVLDLHNNRI-MSIPKDVTH 471

Query: 578 GRSLMMIDLSDNLLQGRIPR-SLVNCSSLKFLDLGNN 613
            ++L  ++++ N L+  +P       +SL+++ L +N
Sbjct: 472 LQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 95.7 bits (238), Expect = 2e-20
 Identities = 90/489 (18%), Positives = 158/489 (32%), Gaps = 51/489 (10%)

Query: 316 LSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSG-P 374
           LSL+ N  S         L  L  L +S  +  S           L++L+ SHN      
Sbjct: 57  LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS 116

Query: 375 IDLDMFLVNFKHLEHLSLSSNRL-SLFTKAIFNTSQKFNFVGLRSCNL--NEFPNFLKNQ 431
                       L HL LS N    L     F    K  F+GL +      +        
Sbjct: 117 CC------PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH 170

Query: 432 HYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDL 491
               +LDL    I G   + L  P+      +   ++         +    +     + L
Sbjct: 171 LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL 230

Query: 492 SYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSS-------NSLEILDLSYNNLSG 544
           +    Q  +      T+   + N +L      W C+           +E L++    ++ 
Sbjct: 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE 290

Query: 545 LLPQCLDNFSDH----LSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLV 600
            + +    +S+     L I  +++  F  S    +     + +  LS +           
Sbjct: 291 RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPP 350

Query: 601 NCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDL 660
           + SS  FL+   N  + +      TL+ L  LIL+ N L    +          L  +D+
Sbjct: 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV 410

Query: 661 SNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQ 720
           S N        +      ++ V+N S                             SN   
Sbjct: 411 SLNSLNSHAYDRTCAWAESILVLNLS-----------------------------SNMLT 441

Query: 721 MMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLE 780
              +  +P  +  + L +NR    IP  + +L+ LQ L++A+N L          LT L+
Sbjct: 442 GSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQ 500

Query: 781 SLDLSNNKF 789
            + L +N +
Sbjct: 501 YIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 79.9 bits (197), Expect = 1e-15
 Identities = 96/502 (19%), Positives = 178/502 (35%), Gaps = 80/502 (15%)

Query: 336 SLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSN 395
             + L +S+   S      +  L++L+ L  SHN     +D  +FL N + LE+L +S N
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFN-QDLEYLDVSHN 110

Query: 396 RLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEP 455
           RL           Q  +   + S               L  LDLS N     +P      
Sbjct: 111 RL-----------QNISCCPMAS---------------LRHLDLSFNDFD-VLPVCKEFG 143

Query: 456 SMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQ----GPLPVPPPQTKHYL 511
           ++   ++L LS                +     LDL   +++      L +P     H +
Sbjct: 144 NLTKLTFLGLSAAKFRQL-DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLV 202

Query: 512 VSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGL-LPQCLDNFSDHLSILDLQHNKFCGS 570
              NSL         N+   L++ ++  N+ +   L   L   +   ++L++       +
Sbjct: 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262

Query: 571 IPQT-----FLSGRSLMMIDLSDNLLQGRIPRSLVNCS-----SLKFLDLGNNQISGTFP 620
              +     F   R +  +++ +  +  RI R     S     SL    + N     +  
Sbjct: 263 WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKE 322

Query: 621 SWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAM 680
           +      E+N+ +L  +     I              ++ + N FT     +       +
Sbjct: 323 ALYSVFAEMNIKMLSISDTP-FIHMVCPP-SPSSFTFLNFTQNVFT-DSVFQGCSTLKRL 379

Query: 681 QVVNTS--ELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSS 738
           Q +      L+    +       + ++L   D SL                      L+S
Sbjct: 380 QTLILQRNGLKNFFKV--ALMTKNMSSLETLDVSLNS--------------------LNS 417

Query: 739 NRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLV 798
           + +D     + A  + + VL+L++N L G +  CL     ++ LDL NN+    IP+ + 
Sbjct: 418 HAYD----RTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVT 470

Query: 799 DLTFLEFFNVSNNNLTGPIPQG 820
            L  L+  NV++N L   +P G
Sbjct: 471 HLQALQELNVASNQLKS-VPDG 491

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 79.1 bits (195), Expect = 2e-15
 Identities = 53/353 (15%), Positives = 110/353 (31%), Gaps = 43/353 (12%)

Query: 89  KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNL----- 143
            L LS +  +            +HL  + L    +       E + +   + L+L     
Sbjct: 150 FLGLSAAKFR---QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN 206

Query: 144 ---SSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNL-------------- 186
              S            L+LSN+   D +       +         L              
Sbjct: 207 SLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS 266

Query: 187 -----VKKLTNLKELALGGVTISSPIP-----HSLANLSSLTLLSLSGCELRGRIPSLLG 236
                      ++ L +  +TI+  I      +S   L SL +  +          +L  
Sbjct: 267 VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYS 326

Query: 237 NLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSL 296
              ++    LS ++          +      L+ + N  +  +      L  L+ L L  
Sbjct: 327 VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR 386

Query: 297 NRFR--GKTPHSMGNFTRLYWLSLASNDF-SGELPASFGNLRSLEGLDISECKFSSQIPS 353
           N  +   K      N + L  L ++ N   S     +     S+  L++S    +  +  
Sbjct: 387 NGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR 446

Query: 354 SLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFN 406
            L    ++K L+  +N       +   + + + L+ L+++SN+L      +F+
Sbjct: 447 CL--PPKVKVLDLHNNRIM---SIPKDVTHLQALQELNVASNQLKSVPDGVFD 494

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 76.4 bits (188), Expect = 2e-14
 Identities = 78/424 (18%), Positives = 139/424 (32%), Gaps = 56/424 (13%)

Query: 89  KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGF 148
            LD+S++ LQ     S     +  L  LDL+FN F    +  E  NL++L++L LS+A F
Sbjct: 104 YLDVSHNRLQNI---SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158

Query: 149 ----FGQIPS--EILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVT 202
                  +        L +LVS  +      +L       L  +    +         V 
Sbjct: 159 RQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVN 218

Query: 203 ISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNL 262
               +  S   L+      L            L N+T L +++ ++   +          
Sbjct: 219 ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT-LQHIETTWKCSVKLF--QFFWP 275

Query: 263 DCLKRLDISWNELSG-----ELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLS 317
             ++ L+I    ++      E   S   L SL    +    F          F  +    
Sbjct: 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM 335

Query: 318 LASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDL 377
           L+ +D          +  S   L+ ++  F+  +      L +L+ L    N       +
Sbjct: 336 LSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV 395

Query: 378 DMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVL 437
            +   N   LE L +S N L                      N + +         + VL
Sbjct: 396 ALMTKNMSSLETLDVSLNSL----------------------NSHAYDRTCAWAESILVL 433

Query: 438 DLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFT----LDLSY 493
           +LS N + G V + L          L+L +N +       M  P++         L+++ 
Sbjct: 434 NLSSNMLTGSVFRCLP----PKVKVLDLHNNRI-------MSIPKDVTHLQALQELNVAS 482

Query: 494 NYLQ 497
           N L+
Sbjct: 483 NQLK 486

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 69.9 bits (171), Expect = 2e-12
 Identities = 64/371 (17%), Positives = 122/371 (32%), Gaps = 47/371 (12%)

Query: 482 RNYDGFTLDLSYNYLQGPLPVP---PPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLS 538
            N     +D S   L     VP   PP+TK   +S NS++ ++     +  + L +L LS
Sbjct: 29  SNELESMVDYSNRNLTH---VPKDLPPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLS 84

Query: 539 YNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRS 598
           +N +  L           L  LD+ HN+   +I    ++  SL  +DLS N     +P  
Sbjct: 85  HNRIRSLDFHVFLFNQ-DLEYLDVSHNRL-QNISCCPMA--SLRHLDLSFNDFD-VLPVC 139

Query: 599 LV--NCSSLKFLDLGNNQISGTFPSWLGTLRELNVLI-LKSNKLHGMIREPNTGCGFPEL 655
               N + L FL L   +        +  L    +L+ L S  + G   E         L
Sbjct: 140 KEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL 199

Query: 656 RIIDLSNNRFTGKLPSK------------YFQCWNAMQVVNTSELRYMEGMIYPFALVSY 703
            ++   N+ F+ ++                    N  +++           +    L   
Sbjct: 200 HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259

Query: 704 AA-------------------LGIYDYSLT-MSNKGQMMSYDKVPNFLTGVILSSNRFDG 743
                                L IY+ ++T   ++ +    +     L    + +  F  
Sbjct: 260 ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLF 319

Query: 744 EIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFL 803
                 +    + +  L+ +      + C  + +    L+ + N F+  + Q    L  L
Sbjct: 320 SKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL 379

Query: 804 EFFNVSNNNLT 814
           +   +  N L 
Sbjct: 380 QTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 66.8 bits (163), Expect = 2e-11
 Identities = 43/246 (17%), Positives = 86/246 (34%), Gaps = 21/246 (8%)

Query: 86  HVIKLDLSNSCLQGFINSSSGLF---KLVHLEWLDLAFN--YFICSEIPPEIINLSRLSY 140
            V  L++ N  +   I+     +    L  L    +      F    +      ++    
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK-M 335

Query: 141 LNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGG 200
           L++S   F   +       S+   L+ + N      +            L  L+ L L  
Sbjct: 336 LSISDTPFIHMVCPPSP--SSFTFLNFTQNV---FTDSVFQGCS----TLKRLQTLILQR 386

Query: 201 VTISS--PIPHSLANLSSLTLLSLSGCEL-RGRIPSLLGNLTKLMYLDLSFNNLLGELPT 257
             + +   +     N+SSL  L +S   L              ++ L+LS N L G +  
Sbjct: 387 NGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR 446

Query: 258 SIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLS 317
            +     +K LD+  N +   +P  + +L +L++L ++ N+ +          T L ++ 
Sbjct: 447 CLPPK--VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW 503

Query: 318 LASNDF 323
           L  N +
Sbjct: 504 LHDNPW 509

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  104 bits (262), Expect = 8e-24
 Identities = 60/247 (24%), Positives = 102/247 (41%), Gaps = 16/247 (6%)

Query: 151 QIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHS 210
           ++P  I   +N   L+L  N    +  +K  +  +L     +L+ L L    I +    +
Sbjct: 57  EVPDGIS--TNTRLLNLHEN---QIQIIKVNSFKHL----RHLEILQLSRNHIRTIEIGA 107

Query: 211 LANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSI-GNLDCLKRLD 269
              L++L  L L    L          L+KL  L L  NN +  +P+     +  L+RLD
Sbjct: 108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR-NNPIESIPSYAFNRIPSLRRLD 166

Query: 270 IS-WNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELP 328
           +     LS     +   L++L  L L++   R     ++    +L  L L+ N  S   P
Sbjct: 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLR--EIPNLTPLIKLDELDLSGNHLSAIRP 224

Query: 329 ASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLE 388
            SF  L  L+ L + + +      ++  NL  L  +  +HNN +  +  D+F     HLE
Sbjct: 225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL-LPHDLF-TPLHHLE 282

Query: 389 HLSLSSN 395
            + L  N
Sbjct: 283 RIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  103 bits (259), Expect = 2e-23
 Identities = 60/251 (23%), Positives = 102/251 (40%), Gaps = 15/251 (5%)

Query: 191 TNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNN 250
           TN + L L    I     +S  +L  L +L LS   +R         L  L  L+L  +N
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF-DN 122

Query: 251 LLGELPTSI-GNLDCLKRLDISWNELSGELPASI-GNLASLEQLELS-LNRFRGKTPHSM 307
            L  +P      L  LK L +  N +   +P+     + SL +L+L  L R    +  + 
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 308 GNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFS 367
              + L +L+LA  +   E+P     L  L+ LD+S    S+  P S + L  L+ L   
Sbjct: 182 EGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239

Query: 368 HNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRS------CNL 421
            +     I+ + F  N + L  ++L+ N L+L    +F        + L        C++
Sbjct: 240 QSQIQV-IERNAF-DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297

Query: 422 NEFPNFLKNQH 432
                ++K+  
Sbjct: 298 LWLSWWIKDMA 308

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 87.1 bits (216), Expect = 4e-18
 Identities = 58/293 (19%), Positives = 104/293 (35%), Gaps = 45/293 (15%)

Query: 526 CNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMID 585
           C+ SN    +     NL  + P      S +  +L+L  N+       +F   R L ++ 
Sbjct: 39  CSCSNQFSKVICVRKNLREV-PD---GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQ 94

Query: 586 LSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIRE 645
           LS N ++     +    ++L  L+L +N+++         L +L  L L++N +  +   
Sbjct: 95  LSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI--P 152

Query: 646 PNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAA 705
                  P LR +DL   +    +    F+          S LRY               
Sbjct: 153 SYAFNRIPSLRRLDLGELKRLSYISEGAFE--------GLSNLRY--------------- 189

Query: 706 LGIYDYSLTMSNKGQMMSYDKVPNF-----LTGVILSSNRFDGEIPTSIANLKGLQVLSL 760
           L +   +L            ++PN      L  + LS N      P S   L  LQ L +
Sbjct: 190 LNLAMCNLR-----------EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238

Query: 761 ANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNL 813
             + +     +   NL  L  ++L++N  +         L  LE  ++ +N  
Sbjct: 239 IQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 81.3 bits (201), Expect = 3e-16
 Identities = 53/189 (28%), Positives = 79/189 (41%), Gaps = 19/189 (10%)

Query: 89  KLDLSNSCLQGFINSSSGLFK-LVHLEWLDLAFNYFICSEIPPEI-INLSRLSYLNLSSA 146
            L+L ++ L       +G F  L  L+ L L  N      IP      +  L  L+L   
Sbjct: 116 TLELFDNRLTTI---PNGAFVYLSKLKELWLRNNPI--ESIPSYAFNRIPSLRRLDLGEL 170

Query: 147 GFFGQIPSEILE-LSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISS 205
                I     E LSNL  L+L+     NL E+  PNL  L      L EL L G  +S+
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMC---NLREI--PNLTPL----IKLDELDLSGNHLSA 221

Query: 206 PIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSI-GNLDC 264
             P S   L  L  L +   +++    +   NL  L+ ++L+ +N L  LP  +   L  
Sbjct: 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA-HNNLTLLPHDLFTPLHH 280

Query: 265 LKRLDISWN 273
           L+R+ +  N
Sbjct: 281 LERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 80.6 bits (199), Expect = 5e-16
 Identities = 43/233 (18%), Positives = 74/233 (31%), Gaps = 30/233 (12%)

Query: 265 LKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFS 324
            + L++  N++      S  +L  LE L+LS N  R     +      L  L L  N  +
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125

Query: 325 GELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNF 384
                +F  L  L+ L +      S    +   +  L+ L+         I    F    
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF-EGL 184

Query: 385 KHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKI 444
            +L +L+L+   L                         E PN       L+ LDLS N +
Sbjct: 185 SNLRYLNLAMCNLR------------------------EIPNL-TPLIKLDELDLSGNHL 219

Query: 445 HGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQ 497
               P       + +   L +  + +         F        ++L++N L 
Sbjct: 220 SAIRPGSF--QGLMHLQKLWMIQSQIQVI--ERNAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 68.2 bits (167), Expect = 4e-12
 Identities = 68/380 (17%), Positives = 113/380 (29%), Gaps = 106/380 (27%)

Query: 335 RSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSS 394
            +   L++ E +      +S ++L  L+ L+ S N+    I++  F     +L  L L  
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT-IEIGAF-NGLANLNTLELFD 121

Query: 395 NRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIE 454
           NRL+      F          L                 L+ L L  N I        I 
Sbjct: 122 NRLTTIPNGAFV--------YLSK---------------LKELWLRNNPIE------SIP 152

Query: 455 PSMQNFSYL-NLSHNFLIGFYQHPMFFPRNYDGFTLDLS-YNYLQGPLPVPPPQTKHYLV 512
                F+ + +L                       LDL     L               +
Sbjct: 153 SYA--FNRIPSLRR---------------------LDLGELKRLSY-------------I 176

Query: 513 SNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSD--HLSILDLQHNKFCGS 570
           S  +  G          ++L  L+L+  NL  +      N +    L  LDL  N     
Sbjct: 177 SEGAFEG---------LSNLRYLNLAMCNLREI-----PNLTPLIKLDELDLSGNHLSAI 222

Query: 571 IPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELN 630
            P +F     L  + +  + +Q     +  N  SL  ++L +N ++         L  L 
Sbjct: 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282

Query: 631 VLILKSN----------------KLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYF 674
            + L  N                 +          C  P     +L       +L   YF
Sbjct: 283 RIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPP----NLKGRYIG-ELDQNYF 337

Query: 675 QCWNAMQVVNTSELRYMEGM 694
            C+  + V   ++L   EGM
Sbjct: 338 TCYAPVIVEPPADLNVTEGM 357

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 67.9 bits (166), Expect = 5e-12
 Identities = 51/261 (19%), Positives = 83/261 (31%), Gaps = 58/261 (22%)

Query: 554 SDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNN 613
           S+  S +          +P    +  +  +++L +N +Q     S  +   L+ L L  N
Sbjct: 42  SNQFSKVICVRKNL-REVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 614 QISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKY 673
            I          L  LN L L  N+L  +           +L+ + L NN     +PS  
Sbjct: 99  HIRTIEIGAFNGLANLNTLELFDNRLTTI--PNGAFVYLSKLKELWLRNNPIE-SIPSYA 155

Query: 674 FQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTG 733
           F             LR                L + +                    L+ 
Sbjct: 156 FN--------RIPSLRR---------------LDLGEL-----------------KRLSY 175

Query: 734 VILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQI 793
             +S   F+G        L  L+ L+LA  +L    +  L  L  L+ LDLS N  S   
Sbjct: 176 --ISEGAFEG--------LSNLRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLSAIR 223

Query: 794 PQQLVDLTFLEFFNVSNNNLT 814
           P     L  L+   +  + + 
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQ 244

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 4/90 (4%)

Query: 731 LTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFS 790
            + VI        E+P  I      ++L+L  N +    ++   +L  LE L LS N   
Sbjct: 45  FSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR 101

Query: 791 GQIPQQLVDLTFLEFFNVSNNNLTGPIPQG 820
                    L  L    + +N LT  IP G
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTT-IPNG 130

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  102 bits (257), Expect = 8e-24
 Identities = 60/336 (17%), Positives = 105/336 (31%), Gaps = 45/336 (13%)

Query: 138 LSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELA 197
           L  +  S  G    +P EI    +   LDL +N   ++ EL++ +   L     +L  L 
Sbjct: 35  LRVVQCSDLGL-KAVPKEIS--PDTTLLDLQNN---DISELRKDDFKGL----QHLYALV 84

Query: 198 LGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPT 257
           L    IS     + + L  L  L +S   L   IP  L   + L+ L +  N +      
Sbjct: 85  LVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKG 141

Query: 258 SIGNLDCLKRLDISWNEL-SGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWL 316
               L  +  +++  N L +        +   L  L +S  +  G           L  L
Sbjct: 142 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK---DLPETLNEL 198

Query: 317 SLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPID 376
            L  N               L  L +   +       SL  L  L+ L   +N  S    
Sbjct: 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS---R 255

Query: 377 LDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEV 436
           +   L + K L+ + L +N ++      F             C +               
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNITKVGVNDF-------------CPVGFGVKRAY----YNG 298

Query: 437 LDLSCNKIHGKVPKWLIEPSM----QNFSYLNLSHN 468
           + L  N +      W ++P+      +   +   + 
Sbjct: 299 ISLFNNPVP----YWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 97.8 bits (244), Expect = 3e-22
 Identities = 62/286 (21%), Positives = 100/286 (34%), Gaps = 15/286 (5%)

Query: 215 SSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNE 274
              TLL L   ++          L  L  L L  N +      +   L  L++L IS N 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 275 LSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGEL--PASFG 332
           L  E+P ++   +SL +L +  NR R            +  + +  N        P +F 
Sbjct: 114 LV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 333 NLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSL 392
            L  L  L ISE K +  IP  L     L  L   HN     I+L+  L  +  L  L L
Sbjct: 171 GL-KLNYLRISEAKLTG-IPKDL--PETLNELHLDHNKIQA-IELEDLL-RYSKLYRLGL 224

Query: 393 SSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIH----GKV 448
             N++ +      +       + L +  L+  P  L +   L+V+ L  N I        
Sbjct: 225 GHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284

Query: 449 PKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYN 494
                      ++ ++L +N +  +   P  F    D   +     
Sbjct: 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 97.0 bits (242), Expect = 7e-22
 Identities = 73/406 (17%), Positives = 119/406 (29%), Gaps = 115/406 (28%)

Query: 265 LKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFS 324
           L+ +  S   L   +P  I        L+L  N               LY L L +N  S
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 325 GELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNF 384
                +F  LR L+ L IS+      IP +L                             
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNHLVE-IPPNL----------------------------P 122

Query: 385 KHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKI 444
             L  L +  NR+    K +F+        GLR+               +  +++  N +
Sbjct: 123 SSLVELRIHDNRIRKVPKGVFS--------GLRN---------------MNCIEMGGNPL 159

Query: 445 HGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPP 504
                    EP    F  L L+                      L +S   L G      
Sbjct: 160 ENSG----FEPGA--FDGLKLN---------------------YLRISEAKLTG------ 186

Query: 505 PQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQH 564
                  +  +               +L  L L +N +  +  + L  +S  L  L L H
Sbjct: 187 -------IPKDLPE------------TLNELHLDHNKIQAIELEDLLRYS-KLYRLGLGH 226

Query: 565 NKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQIS----GTFP 620
           N+       +     +L  + L +N L  R+P  L +   L+ + L  N I+      F 
Sbjct: 227 NQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285

Query: 621 S--WLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNR 664
              +       N + L +N +     +P T     +   I   N +
Sbjct: 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 88.9 bits (221), Expect = 3e-19
 Identities = 66/347 (19%), Positives = 104/347 (29%), Gaps = 89/347 (25%)

Query: 336 SLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSN 395
               LD+     S       + L  L  L   +N  S  I    F    + L+ L +S N
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK-IHEKAF-SPLRKLQKLYISKN 112

Query: 396 RLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEP 455
            L      + ++                          L  L +  N+I  KVPK +   
Sbjct: 113 HLVEIPPNLPSS--------------------------LVELRIHDNRIR-KVPKGVFS- 144

Query: 456 SMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNN 515
            ++N + + +  N L      P  F                                   
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAF----------------------------------- 169

Query: 516 SLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTF 575
                           L  L +S   L+G+     +     L+ L L HNK   +I    
Sbjct: 170 ------------DGLKLNYLRISEAKLTGIPKDLPET----LNELHLDHNKI-QAIELED 212

Query: 576 LSG-RSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLIL 634
           L     L  + L  N ++     SL    +L+ L L NN++S   P+ L  L+ L V+ L
Sbjct: 213 LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL 271

Query: 635 KSNKLH----GMIREPNTGCGFPELRIIDLSNNRFT-GKLPSKYFQC 676
            +N +             G        I L NN     ++    F+C
Sbjct: 272 HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 86.6 bits (215), Expect = 2e-18
 Identities = 55/323 (17%), Positives = 100/323 (30%), Gaps = 58/323 (17%)

Query: 86  HVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEII-NLSRLSYLNLS 144
               LDL N+ +            L HL  L L  N    S+I  +    L +L  L +S
Sbjct: 55  DTTLLDLQNNDISEL--RKDDFKGLQHLYALVLVNNKI--SKIHEKAFSPLRKLQKLYIS 110

Query: 145 SAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTIS 204
                 +IP  +   S+LV L +  N                  ++  +           
Sbjct: 111 KN-HLVEIPPNL--PSSLVELRIHDN------------------RIRKVP---------- 139

Query: 205 SPIPHSLANLSSLTLLSLSGCELR-GRIPSLLGNLTKLMYLDLSFNNLLGELPTSI--GN 261
                  + L ++  + + G  L          +  KL YL +S   L     T I    
Sbjct: 140 ---KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL-----TGIPKDL 191

Query: 262 LDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASN 321
            + L  L +  N++       +   + L +L L  N+ R     S+     L  L L +N
Sbjct: 192 PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251

Query: 322 DFSGELPASFGNLRSLEGLDISECKFSSQIPSS-------LRNLAQLKFLEFSHNNFS-G 373
             S  +PA   +L+ L+ + +     +  +  +           A    +   +N     
Sbjct: 252 KLS-RVPAGLPDLKLLQVVYLHTNNITK-VGVNDFCPVGFGVKRAYYNGISLFNNPVPYW 309

Query: 374 PIDLDMFLVNFKHLEHLSLSSNR 396
            +    F         +   + +
Sbjct: 310 EVQPATFR-CVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 83.9 bits (208), Expect = 1e-17
 Identities = 65/291 (22%), Positives = 100/291 (34%), Gaps = 27/291 (9%)

Query: 527 NSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDL 586
           +    L+ L  +Y+        C      HL ++         ++P+         ++DL
Sbjct: 11  SGIPDLDSLPPTYS------AMCPFGCHCHLRVVQCSDLGL-KAVPKEI--SPDTTLLDL 61

Query: 587 SDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREP 646
            +N +             L  L L NN+IS         LR+L  L +  N L  +   P
Sbjct: 62  QNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI--PP 119

Query: 647 NTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYP--FALVSYA 704
           N       L  + + +NR   K+P   F     M  +             P  F  +   
Sbjct: 120 NL---PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLN 175

Query: 705 ALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPT-SIANLKGLQVLSLANN 763
            L I +  LT   K        +P  L  + L  N+    I    +     L  L L +N
Sbjct: 176 YLRISEAKLTGIPKD-------LPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHN 227

Query: 764 SLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLT 814
            +       L  L  L  L L NNK S ++P  L DL  L+   +  NN+T
Sbjct: 228 QIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 81.6 bits (202), Expect = 9e-17
 Identities = 69/290 (23%), Positives = 113/290 (38%), Gaps = 39/290 (13%)

Query: 513 SNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIP 572
           S+  L   +P  I   S    +LDL  N++S L          HL  L L +NK      
Sbjct: 41  SDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQ-HLYALVLVNNKISKIHE 95

Query: 573 QTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVL 632
           + F   R L  + +S N L   IP +L   SSL  L + +N+I          LR +N +
Sbjct: 96  KAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCI 152

Query: 633 ILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYME 692
            +  N L     EP    G  +L  + +S  + T  +P    +          +EL +++
Sbjct: 153 EMGGNPLENSGFEPGAFDG-LKLNYLRISEAKLT-GIPKDLPE--------TLNEL-HLD 201

Query: 693 G----MIYPFALVSYAALGIYDYSLTMS-NKGQMMSY---DKVPNFLTGVILSSNRFDGE 744
                 I    L+ Y+ L    Y L +  N+ +M+       +P  L  + L +N+    
Sbjct: 202 HNKIQAIELEDLLRYSKL----YRLGLGHNQIRMIENGSLSFLPT-LRELHLDNNKLS-R 255

Query: 745 IPTSIANLKGLQVLSLANNSLHG------HILSCLGNLTGLESLDLSNNK 788
           +P  + +LK LQV+ L  N++          +           + L NN 
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.4 bits (191), Expect = 3e-15
 Identities = 46/269 (17%), Positives = 81/269 (30%), Gaps = 40/269 (14%)

Query: 82  ENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEI-INLSRLSY 140
                + KL +S + L         L     L  L +  N     ++P  +   L  ++ 
Sbjct: 99  SPLRKLQKLYISKNHLVEI---PPNLPS--SLVELRIHDNRI--RKVPKGVFSGLRNMNC 151

Query: 141 LNLSS-AGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALG 199
           + +               +   L  L +S      L  +   +L         L EL L 
Sbjct: 152 IEMGGNPLENSGFEPGAFDGLKLNYLRISEA---KLTGI-PKDL------PETLNELHLD 201

Query: 200 GVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSI 259
              I +     L   S L  L L   ++R      L  L  L  L L  N  L  +P  +
Sbjct: 202 HNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGL 260

Query: 260 GNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLA 319
            +L  L+ + +  N ++                ++ +N F                +SL 
Sbjct: 261 PDLKLLQVVYLHTNNIT----------------KVGVNDFCPVGFGV--KRAYYNGISLF 302

Query: 320 SN--DFSGELPASFGNLRSLEGLDISECK 346
           +N   +    PA+F  +     +     K
Sbjct: 303 NNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 49/279 (17%), Positives = 89/279 (31%), Gaps = 60/279 (21%)

Query: 513 SNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKF-CGSI 571
           S N L  +IP    N  +SL  L +  N +  +          +++ +++  N       
Sbjct: 110 SKNHLV-EIPP---NLPSSLVELRIHDNRIRKVPKGVFSGLR-NMNCIEMGGNPLENSGF 164

Query: 572 PQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNV 631
                 G  L  + +S+  L   IP+ L    +L  L L +N+I       L    +L  
Sbjct: 165 EPGAFDGLKLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYR 221

Query: 632 LILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYM 691
           L L  N++  +  E  +    P LR + L NN+ + ++P+            +   L+  
Sbjct: 222 LGLGHNQIRMI--ENGSLSFLPTLRELHLDNNKLS-RVPAGLP---------DLKLLQV- 268

Query: 692 EGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIAN 751
                                + +             N +T V    N F          
Sbjct: 269 ---------------------VYLHT-----------NNITKV--GVNDFCP--VGFGVK 292

Query: 752 LKGLQVLSLANNSLHGHILS--CLGNLTGLESLDLSNNK 788
                 +SL NN +    +       +T   ++   N K
Sbjct: 293 RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 24/91 (26%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 730 FLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKF 789
            L  V  S       +P  I+      +L L NN +          L  L +L L NNK 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 790 SGQIPQQLVDLTFLEFFNVSNNNLTGPIPQG 820
           S    +    L  L+   +S N+L   IP  
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLVE-IPPN 120

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  105 bits (262), Expect = 1e-23
 Identities = 52/297 (17%), Positives = 99/297 (33%), Gaps = 39/297 (13%)

Query: 83  NTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLN 142
           N   + +    N+    + +  S   K           N      +  E + +++ S L 
Sbjct: 9   NNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRN--EAVSLLKECL-INQFSELQ 65

Query: 143 LSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVT 202
           L+       +P  +     +  L+++ N            L +L +   +L+ L      
Sbjct: 66  LNRLN-LSSLPDNL--PPQITVLEITQN-----------ALISLPELPASLEYLDACDNR 111

Query: 203 ISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNL 262
           +S+ +P   A+L     L +   +L   +P L   L     ++   NN L  LP    + 
Sbjct: 112 LST-LPELPASLKH---LDVDNNQLT-MLPELPALLEY---INAD-NNQLTMLPELPTS- 161

Query: 263 DCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRL----YWLSL 318
             L+ L +  N+L+  LP    +   LE L++S N      P              +   
Sbjct: 162 --LEVLSVRNNQLT-FLPELPES---LEALDVSTNLLES-LPAVPVRNHHSEETEIFFRC 214

Query: 319 ASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPI 375
             N  +  +P +  +L     + + +   SS+I  SL               FS   
Sbjct: 215 RENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSD 270

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 98.9 bits (246), Expect = 2e-21
 Identities = 60/312 (19%), Positives = 103/312 (33%), Gaps = 53/312 (16%)

Query: 157 LELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKL----------------------TNLK 194
           + L    +  LS NS+YN I     +  +   K                           
Sbjct: 3   IMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFS 62

Query: 195 ELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGE 254
           EL L  + +SS +P +L     +T+L ++   L   +P L  +L    YLD   +N L  
Sbjct: 63  ELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLPELPASLE---YLDAC-DNRLST 114

Query: 255 LPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLY 314
           LP    +   LK LD+  N+L+  LP        LE +    N+     P    +   L 
Sbjct: 115 LPELPAS---LKHLDVDNNQLT-MLPELPAL---LEYINADNNQLT-MLPELPTS---LE 163

Query: 315 WLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLK----FLEFSHNN 370
            LS+ +N  +  LP    +L +   LD+S     S +P+        +    F     N 
Sbjct: 164 VLSVRNNQLT-FLPELPESLEA---LDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENR 218

Query: 371 FSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKN 430
            +    +   +++      + L  N LS   +   +               +        
Sbjct: 219 IT---HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNT 275

Query: 431 QHYLEVLDLSCN 442
            H      ++  
Sbjct: 276 LHRPLADAVTAW 287

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 95.8 bits (238), Expect = 1e-20
 Identities = 56/359 (15%), Positives = 102/359 (28%), Gaps = 61/359 (16%)

Query: 327 LPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKH 386
           +     N  SL   +      S           + +       N +  + L +       
Sbjct: 3   IMLPINNNFSLS-QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSL-LKECLINQ 60

Query: 387 LEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHG 446
              L L+   LS     +           +    L   P    +   LE LD   N++  
Sbjct: 61  FSELQLNRLNLSSLPDNLPPQITVLE---ITQNALISLPELPAS---LEYLDACDNRLST 114

Query: 447 KVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQ 506
                 +     +  +L++ +N L                             LP  P  
Sbjct: 115 ------LPELPASLKHLDVDNNQLTM---------------------------LPELPAL 141

Query: 507 TKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNK 566
            ++    NN LT  +P    +    LE+L +  N L+ L P+  ++    L  LD+  N 
Sbjct: 142 LEYINADNNQLT-MLPELPTS----LEVLSVRNNQLTFL-PELPES----LEALDVSTNL 191

Query: 567 FCGSIPQTFLSGRSL----MMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSW 622
              S+P   +         +     +N +   IP ++++      + L +N +S      
Sbjct: 192 L-ESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRES 249

Query: 623 LGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQ 681
           L                     + NT        + D     F     S   Q W+A +
Sbjct: 250 LSQQTAQPDYHGPRIYFSMSDGQQNT----LHRPLADAVTAWFPENKQSDVSQIWHAFE 304

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 90.0 bits (223), Expect = 9e-19
 Identities = 53/349 (15%), Positives = 103/349 (29%), Gaps = 57/349 (16%)

Query: 86  HVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRL--SYLNL 143
              +L L+   L         L     +  L++  N      +P    +L  L      L
Sbjct: 60  QFSELQLNRLNLSSL---PDNLPP--QITVLEITQNAL--ISLPELPASLEYLDACDNRL 112

Query: 144 SSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIE----LKEPNLGN-----LVKKLTNLK 194
           S+      +P      ++L  LD+ +N    L E    L+  N  N     L +  T+L+
Sbjct: 113 ST------LPELP---ASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLE 163

Query: 195 ELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKL----MYLDLSFNN 250
            L++    ++  +P       SL  L +S   L   +P++           ++      N
Sbjct: 164 VLSVRNNQLTF-LPELP---ESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCR-EN 217

Query: 251 LLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNF 310
            +  +P +I +LD    + +  N LS  +  S+    +          F           
Sbjct: 218 RITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLH 277

Query: 311 TRLY-----WLSLASNDFSGELPASFGNLRSLEGLDISECKFS---------------SQ 350
             L      W          ++  +F +            + S               + 
Sbjct: 278 RPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAA 337

Query: 351 IPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSL 399
               L   A+L+   F+    +     D   + + +L    L       
Sbjct: 338 WLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEG 386

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 88.9 bits (220), Expect = 2e-18
 Identities = 61/346 (17%), Positives = 116/346 (33%), Gaps = 68/346 (19%)

Query: 500 LPVPPPQTKHYLVSNNSLTGKIP------FWICNSSNSLEILDLSYNNLSGLLPQCLDNF 553
           + +  P   ++ +S NS    I       F   +      +   + N    LL +CL N 
Sbjct: 1   MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN- 59

Query: 554 SDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNN 613
               S L L       S+P        + +++++ N L   +P      +SL++LD  +N
Sbjct: 60  --QFSELQLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLPELP---ASLEYLDACDN 110

Query: 614 QISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKY 673
           ++S T P    +L+ L+   + +N+L  +   P        L  I+  NN+ T  LP   
Sbjct: 111 RLS-TLPELPASLKHLD---VDNNQLTMLPELPAL------LEYINADNNQLT-MLPEL- 158

Query: 674 FQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTG 733
                       + L                 L + +  LT           ++P  L  
Sbjct: 159 -----------PTSLEV---------------LSVRNNQLT--------FLPELPESLEA 184

Query: 734 VILSSNRFDGEIPTSIANLKGLQ----VLSLANNSLHGHILSCLGNLTGLESLDLSNNKF 789
           + +S+N  +  +P         +          N +  HI   + +L    ++ L +N  
Sbjct: 185 LDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPL 242

Query: 790 SGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNL 835
           S +I + L   T    ++      +    Q N        +     
Sbjct: 243 SSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWF 288

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 80.8 bits (199), Expect = 7e-16
 Identities = 45/313 (14%), Positives = 97/313 (30%), Gaps = 61/313 (19%)

Query: 530 NSLEILDLSYNNLSGLLPQCLDNFSD--HLSILDLQHNKFCGSIPQTFLSGRSLMMIDLS 587
           N     +  YN +SG        +      ++     N+    + +  +       + L+
Sbjct: 10  NFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLI--NQFSELQLN 67

Query: 588 DNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPN 647
              L   +P +L     +  L++  N +  + P    +L  L+      N+L  +   P 
Sbjct: 68  RLNLS-SLPDNL--PPQITVLEITQNALI-SLPELPASLEYLD---ACDNRLSTL---PE 117

Query: 648 TGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALG 707
                  L+ +D+ NN+ T  LP               + L Y               + 
Sbjct: 118 L---PASLKHLDVDNNQLT-MLPE------------LPALLEY---------------IN 146

Query: 708 IYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHG 767
             +  LT           ++P  L  + + +N+    +P    +L   + L ++ N L  
Sbjct: 147 ADNNQLT--------MLPELPTSLEVLSVRNNQL-TFLPELPESL---EALDVSTNLLES 194

Query: 768 ---HILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFP 824
                +    +           N+ +  IP+ ++ L       + +N L+  I +     
Sbjct: 195 LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253

Query: 825 TFDKTSFNGNLGL 837
           T         +  
Sbjct: 254 TAQPDYHGPRIYF 266

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  102 bits (255), Expect = 7e-23
 Identities = 75/446 (16%), Positives = 140/446 (31%), Gaps = 70/446 (15%)

Query: 192 NLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNL 251
           N          + +    S   L++LT L      +     + +  LT L  L  + NN 
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNN- 75

Query: 252 LGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFT 311
           +  L   +     L  L    N+L+  L   +  L  L  L    N+    T   +    
Sbjct: 76  ITTLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKL---TKLDVSQNP 127

Query: 312 RLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNF 371
            L +L+ A N  + E+     +   L  LD    K  +++   +    QL  L+ S N  
Sbjct: 128 LLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKI 182

Query: 372 SGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQ 431
           +   +LD  +   K L  L+  +N ++       N + +  F+   S  L E    +   
Sbjct: 183 T---ELD--VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEID--VTPL 232

Query: 432 HYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDL 491
             L   D S N +       L   ++   + L+     L+                 +DL
Sbjct: 233 TQLTYFDCSVNPLTE-----LDVSTLSKLTTLHCIQTDLL----------------EIDL 271

Query: 492 SYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLD 551
           ++N           Q  ++         ++       +  L +LD     ++ L      
Sbjct: 272 THN----------TQLIYFQAEGCRKIKELDV---THNTQLYLLDCQAAGITELDLSQNP 318

Query: 552 NFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLG 611
                L  L L + +    +  +  +   L  +   +  +Q     S+    +L      
Sbjct: 319 K----LVYLYLNNTELT-ELDVSHNT--KLKSLSCVNAHIQD-FS-SVGKIPALNNNFEA 369

Query: 612 NNQISGTFPSWLGTLRELNVLILKSN 637
             Q   T P    T   L + +    
Sbjct: 370 EGQTI-TMPKETLTNNSLTIAVSPDL 394

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 94.0 bits (234), Expect = 3e-20
 Identities = 68/375 (18%), Positives = 130/375 (34%), Gaps = 52/375 (13%)

Query: 82  ENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYL 141
           E    +  LD  NS     I   +G+ KL  L  L    N    + +   +   + L+YL
Sbjct: 39  EQLATLTSLDCHNS----SITDMTGIEKLTGLTKLICTSNNI--TTLD--LSQNTNLTYL 90

Query: 142 NLSSAGFFGQIPS-EILELSNLVSLDLSHNSYYNLIELKEPNLGNL-----------VKK 189
              S     ++ + ++  L+ L  L+   N    L   + P L  L           V  
Sbjct: 91  ACDSN----KLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSH 146

Query: 190 LTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFN 249
            T L EL        + +   +   + LT L  S  ++   +   +     L  L+    
Sbjct: 147 NTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCD-T 200

Query: 250 NLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGN 309
           N + +L   +     L  LD S N+L+ E+   +  L  L   + S+N     T   +  
Sbjct: 201 NNITKLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPL---TELDVST 252

Query: 310 FTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHN 369
            ++L  L     D   E+  +  +   L       C+   ++   + +  QL  L+    
Sbjct: 253 LSKLTTLHCIQTDLL-EIDLT--HNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAA 307

Query: 370 NFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLK 429
             +   +LD  L     L +L L++  L+    +     +  +     + ++ +F +  K
Sbjct: 308 GIT---ELD--LSQNPKLVYLYLNNTELTELDVSHNTKLKSLS---CVNAHIQDFSSVGK 359

Query: 430 NQHYLEVLDLSCNKI 444
               L     +  + 
Sbjct: 360 IPA-LNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 69.7 bits (171), Expect = 2e-12
 Identities = 71/513 (13%), Positives = 136/513 (26%), Gaps = 125/513 (24%)

Query: 337 LEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNR 396
                 +  +  +    S   LA L  L+  +++ +   D+   +     L  L  +SN 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMT-GIEKLTGLTKLICTSNN 75

Query: 397 LSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPS 456
           ++       + +    ++   S  L      +     L  L+   NK+       L    
Sbjct: 76  ITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTK-----LDVSQ 125

Query: 457 MQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNS 516
               +YLN + N L                  +D+S+N           Q        N 
Sbjct: 126 NPLLTYLNCARNTLT----------------EIDVSHN----------TQLTELDCHLNK 159

Query: 517 LTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFL 576
              K+          L  LD S+N ++ L           L+ L+   N           
Sbjct: 160 KITKLDV---TPQTQLTTLDCSFNKITELDVSQNKL----LNRLNCDTNN---------- 202

Query: 577 SGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKS 636
               +  +DL+                 L FLD  +N+++      +  L +L       
Sbjct: 203 ----ITKLDLN-------------QNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSV 242

Query: 637 NKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIY 696
           N L  +           +L  +                     + + + ++L Y      
Sbjct: 243 NPLTELDV-----STLSKLTTLHCIQTDLL------------EIDLTHNTQLIY------ 279

Query: 697 PFALVSYAALGIYDYSLTMSNKGQMMSYDKVPN-FLTGVILSSNRFDGEIPTSIANLKGL 755
                                  ++   D   N  L  +   +     E+   ++    L
Sbjct: 280 ----------------FQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKL 320

Query: 756 QVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTG 815
             L L N  L    L  + + T L+SL   N          +  +  L     +      
Sbjct: 321 VYLYLNNTELT--ELD-VSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTIT 375

Query: 816 PIPQGNQFPTFDKTSFNGNLGLCGKPLPKECEN 848
              +     +         L   G P+  E  +
Sbjct: 376 MPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGD 408

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 97.8 bits (244), Expect = 2e-22
 Identities = 58/253 (22%), Positives = 103/253 (40%), Gaps = 17/253 (6%)

Query: 126 SEIPPEIINLSRLSYLNLSSAGFFGQIPSEILE-LSNLVSLDLSHNSYYNLIELKEPNLG 184
           + +P  I   S  + L L S      +P  + + L+ L  L LS N     +  K     
Sbjct: 20  TSVPTGI--PSSATRLELES-NKLQSLPHGVFDKLTQLTKLSLSSNG----LSFKGCCSQ 72

Query: 185 NLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIP--SLLGNLTKLM 242
           +     T+LK L L    + + +  +   L  L  L      L+ ++   S+  +L  L+
Sbjct: 73  SD-FGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLI 129

Query: 243 YLDLSFNNLLGELPTSI-GNLDCLKRLDISWNELSGELPASI-GNLASLEQLELSLNRFR 300
           YLD+S  +        I   L  L+ L ++ N         I   L +L  L+LS  +  
Sbjct: 130 YLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

Query: 301 GKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNL-A 359
             +P +  + + L  L+++ N+F       +  L SL+ LD S     +     L++  +
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 248

Query: 360 QLKFLEFSHNNFS 372
            L FL  + N+F+
Sbjct: 249 SLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 95.1 bits (237), Expect = 2e-21
 Identities = 63/240 (26%), Positives = 98/240 (40%), Gaps = 14/240 (5%)

Query: 89  KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEI-INLSRLSYLNLSSAG 147
           +L+L ++ LQ          KL  L  L L+ N         +     + L YL+LS  G
Sbjct: 32  RLELESNKLQSL--PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 148 FFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPI 207
               + S  L L  L  LD  H+   NL ++ E    ++   L NL  L +         
Sbjct: 90  -VITMSSNFLGLEQLEHLDFQHS---NLKQMSEF---SVFLSLRNLIYLDISHTHTRVAF 142

Query: 208 PHSLANLSSLTLLSLSGCELRGRIPS-LLGNLTKLMYLDLSFNNLLGELPTSI-GNLDCL 265
                 LSSL +L ++G   +      +   L  L +LDLS    L +L  +   +L  L
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSL 201

Query: 266 KRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNF-TRLYWLSLASNDFS 324
           + L++S N            L SL+ L+ SLN         + +F + L +L+L  NDF+
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 89.7 bits (223), Expect = 1e-19
 Identities = 68/307 (22%), Positives = 116/307 (37%), Gaps = 61/307 (19%)

Query: 266 KRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASND--F 323
             +  +   L+  +P  I   +S  +LEL  N+ +          T+L  LSL+SN   F
Sbjct: 10  TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 324 SGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVN 383
            G    S     SL+ LD+S     + + S+   L QL+ L+F H+N     +  +FL +
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-S 124

Query: 384 FKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEF--PNFLKNQHYLEVLDLSC 441
            ++L +L +S     +    IFN       + +   +  E   P+       L  LDLS 
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 442 NKIHGKVPKWLIEPSMQNFSYL-NLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPL 500
            ++        + P+   F+ L +L                       L++S+N      
Sbjct: 185 CQLEQ------LSPTA--FNSLSSLQV---------------------LNMSHNNFF--- 212

Query: 501 PVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSIL 560
                               +  +     NSL++LD S N++     Q L +F   L+ L
Sbjct: 213 -------------------SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253

Query: 561 DLQHNKF 567
           +L  N F
Sbjct: 254 NLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 87.0 bits (216), Expect = 1e-18
 Identities = 62/313 (19%), Positives = 99/313 (31%), Gaps = 66/313 (21%)

Query: 485 DGFTLDLSYNYLQGPLPVP---PPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNN 541
            G  +  +   L     VP   P       + +N L   +P  + +    L  L LS N 
Sbjct: 8   SGTEIRCNSKGLTS---VPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNG 63

Query: 542 LS--GLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSL 599
           LS  G   Q     +  L  LDL  N    ++   FL    L  +D   + L+     S+
Sbjct: 64  LSFKGCCSQSDFGTT-SLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 121

Query: 600 -VNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRII 658
            ++  +L +LD+ +      F      L  L VL +  N        P+       L  +
Sbjct: 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFL 180

Query: 659 DLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNK 718
           DLS  +   +L    F   +++QV+N                                  
Sbjct: 181 DLSQCQLE-QLSPTAFNSLSSLQVLN---------------------------------- 205

Query: 719 GQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNL-T 777
                            +S N F          L  LQVL  + N +       L +  +
Sbjct: 206 -----------------MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 248

Query: 778 GLESLDLSNNKFS 790
            L  L+L+ N F+
Sbjct: 249 SLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 57/285 (20%), Positives = 97/285 (34%), Gaps = 41/285 (14%)

Query: 388 EHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFP-NFLKNQHYLEVLDLSCNKIHG 446
             +  +S  L+     I +++ +     L S  L   P         L  L LS N +  
Sbjct: 10  TEIRCNSKGLTSVPTGIPSSATRLE---LESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 447 KVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFT----LDLSYNYLQGPLPV 502
           K      +    +  YL+LS N +I           N+ G      LD  ++ L+    +
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVITM-------SSNFLGLEQLEHLDFQHSNLKQ---M 116

Query: 503 PPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDL 562
                   L                   +L  LD+S+ +         +  S  L +L +
Sbjct: 117 SEFSVFLSL------------------RNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKM 157

Query: 563 QHNKFCGSIPQTFLSG-RSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPS 621
             N F  +      +  R+L  +DLS   L+   P +  + SSL+ L++ +N        
Sbjct: 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217

Query: 622 WLGTLRELNVLILKSNKLHGMIREPNTGCGFPE-LRIIDLSNNRF 665
               L  L VL    N +     +      FP  L  ++L+ N F
Sbjct: 218 PYKCLNSLQVLDYSLNHIMTS--KKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.1 bits (211), Expect = 4e-18
 Identities = 57/230 (24%), Positives = 91/230 (39%), Gaps = 28/230 (12%)

Query: 82  ENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYL 141
           +    + KL LS++ L      S   F    L++LDL+FN      +    + L +L +L
Sbjct: 49  DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--ITMSSNFLGLEQLEHL 106

Query: 142 NLS--------SAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNL 193
           +              F       L L NL+ LD+SH    +           +   L++L
Sbjct: 107 DFQHSNLKQMSEFSVF-------LSLRNLIYLDISHT---HTRVAFN----GIFNGLSSL 152

Query: 194 KELALGG-VTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLL 252
           + L + G     + +P     L +LT L LS C+L    P+   +L+ L  L++S NN  
Sbjct: 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212

Query: 253 GELPTSIGNLDCLKRLDISWNELSGELPASI--GNLASLEQLELSLNRFR 300
                    L+ L+ LD S N +             +SL  L L+ N F 
Sbjct: 213 SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 79.3 bits (196), Expect = 4e-16
 Identities = 52/305 (17%), Positives = 92/305 (30%), Gaps = 86/305 (28%)

Query: 513 SNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNK--FCGS 570
           ++  LT  +P  I    +S   L+L  N L  L     D  +  L+ L L  N   F G 
Sbjct: 15  NSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSSNGLSFKGC 69

Query: 571 IPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELN 630
             Q+     SL  +DLS N +   +  + +    L+ LD  ++ +               
Sbjct: 70  CSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-------------- 114

Query: 631 VLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRY 690
                       + E +       L  +D+S+        +  F           S L  
Sbjct: 115 -----------QMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFN--------GLSSLEV 154

Query: 691 MEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSI- 749
           ++                                           ++ N F       I 
Sbjct: 155 LK-------------------------------------------MAGNSFQENFLPDIF 171

Query: 750 ANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVS 809
             L+ L  L L+   L     +   +L+ L+ L++S+N F          L  L+  + S
Sbjct: 172 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231

Query: 810 NNNLT 814
            N++ 
Sbjct: 232 LNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.9 bits (195), Expect = 5e-16
 Identities = 62/309 (20%), Positives = 94/309 (30%), Gaps = 80/309 (25%)

Query: 336 SLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSN 395
           S   L++   K  S        L QL  L  S N  S              L++L LS N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 396 RLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEP 455
            +   +           F+GL                 LE LD   + +       + E 
Sbjct: 89  GVITMSSN---------FLGLEQ---------------LEHLDFQHSNLKQ-----MSEF 119

Query: 456 SMQNFSYL-NLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSN 514
           S+  F  L NL +                     LD+S+ + +                 
Sbjct: 120 SV--FLSLRNLIY---------------------LDISHTHTR----------------- 139

Query: 515 NSLTGKIPFWICNSSNSLEILDLSYNN-LSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQ 573
                     I N  +SLE+L ++ N+     LP        +L+ LDL   +    +  
Sbjct: 140 -----VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-NLTFLDLSQCQL-EQLSP 192

Query: 574 -TFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTL-RELNV 631
             F S  SL ++++S N             +SL+ LD   N I  +    L      L  
Sbjct: 193 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 252

Query: 632 LILKSNKLH 640
           L L  N   
Sbjct: 253 LNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 75.0 bits (185), Expect = 1e-14
 Identities = 46/198 (23%), Positives = 76/198 (38%), Gaps = 18/198 (9%)

Query: 81  NENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEII--NLSRL 138
           +  T  +  LDLS + +      SS    L  LE LD   +     ++    +  +L  L
Sbjct: 74  DFGTTSLKYLDLSFNGVI---TMSSNFLGLEQLEHLDFQHSNL--KQMSEFSVFLSLRNL 128

Query: 139 SYLNLSSAGFFGQIPSEILE-LSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELA 197
            YL++S         + I   LS+L  L ++ NS+          L ++  +L NL  L 
Sbjct: 129 IYLDISH-THTRVAFNGIFNGLSSLEVLKMAGNSFQENF------LPDIFTELRNLTFLD 181

Query: 198 LGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPT 257
           L    +    P +  +LSSL +L++S              L  L  LD S N+ +     
Sbjct: 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKK 240

Query: 258 SI--GNLDCLKRLDISWN 273
                    L  L+++ N
Sbjct: 241 QELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 52/238 (21%), Positives = 80/238 (33%), Gaps = 44/238 (18%)

Query: 584 IDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMI 643
           I  +   L   +P  +   SS   L+L +N++          L +L  L L SN L    
Sbjct: 12  IRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 644 REPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSY 703
               +  G   L+ +DLS N     + S +             +L +             
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL---------GLEQLEH------------- 105

Query: 704 AALGIYDYSLTMS-NKGQMMSYDKVPNFLTGVI---LSSNRFDGEIPTSI-ANLKGLQVL 758
                    L    +  + MS   V   L  +I   +S           I   L  L+VL
Sbjct: 106 ---------LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVL 155

Query: 759 SLANNSLHGHILS-CLGNLTGLESLDLSNNKFSGQIPQQ-LVDLTFLEFFNVSNNNLT 814
            +A NS   + L      L  L  LDLS  +   Q+       L+ L+  N+S+NN  
Sbjct: 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 727 VPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILS--CLGNLTGLESLDL 784
           +P+  T + L SN+           L  L  LSL++N L             T L+ LDL
Sbjct: 26  IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 785 SNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQF 823
           S N     +    + L  LE  +  ++NL   + + + F
Sbjct: 86  SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ-MSEFSVF 122

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 94.4 bits (235), Expect = 7e-21
 Identities = 58/265 (21%), Positives = 103/265 (38%), Gaps = 22/265 (8%)

Query: 152 IPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSL 211
           IPS +     + SLDLS+N    +  +   +L    ++  NL+ L L    I++    S 
Sbjct: 46  IPSGLT--EAVKSLDLSNN---RITYISNSDL----QRCVNLQALVLTSNGINTIEEDSF 96

Query: 212 ANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSI-GNLDCLKRLDI 270
           ++L SL  L LS   L     S    L+ L +L+L  N       TS+  +L  L+ L +
Sbjct: 97  SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156

Query: 271 SWNELSGELPASI-GNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPA 329
              +   ++       L  LE+LE+  +  +   P S+ +   +  L L        L  
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEI 216

Query: 330 SFGNLRSLEGLDISE--------CKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFL 381
                 S+E L++ +         + S+   +SL      + ++ +  +      +   L
Sbjct: 217 FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF---QVMKLL 273

Query: 382 VNFKHLEHLSLSSNRLSLFTKAIFN 406
                L  L  S N+L      IF+
Sbjct: 274 NQISGLLELEFSRNQLKSVPDGIFD 298

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 86.7 bits (215), Expect = 2e-18
 Identities = 56/286 (19%), Positives = 105/286 (36%), Gaps = 31/286 (10%)

Query: 89  KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEI-INLSRLSYLNLSSAG 147
            LDLSN+ +     S+S L + V+L+ L L  N    + I  +   +L  L +L+LS   
Sbjct: 56  SLDLSNNRITYI--SNSDLQRCVNLQALVLTSNGI--NTIEEDSFSSLGSLEHLDLSY-N 110

Query: 148 FFGQIPSEILE-LSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSP 206
           +   + S   + LS+L  L+L  N Y  L E       +L   LT L+ L +G +   + 
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE------TSLFSHLTKLQILRVGNMDTFTK 164

Query: 207 IPH-SLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCL 265
           I     A L+ L  L +   +L+   P  L ++  + +L L     +  L   +     +
Sbjct: 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV 224

Query: 266 KRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSG 325
           + L++   +L                     +       +S+        + +       
Sbjct: 225 ECLELRDTDLDT----------------FHFSELSTGETNSLIKKFTFRNVKITDESLF- 267

Query: 326 ELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNF 371
           ++      +  L  L+ S  +  S        L  L+ +    N +
Sbjct: 268 QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 83.2 bits (206), Expect = 3e-17
 Identities = 57/312 (18%), Positives = 106/312 (33%), Gaps = 46/312 (14%)

Query: 513 SNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIP 572
           S+ SL   IP  +   + +++ LDLS N ++ +    L     +L  L L  N       
Sbjct: 39  SSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCV-NLQALVLTSNGINTIEE 93

Query: 573 QTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFP-SWLGTLRELNV 631
            +F S  SL  +DLS N L           SSL FL+L  N        S    L +L +
Sbjct: 94  DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153

Query: 632 LILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYM 691
           L + +      I +     G   L  +++  +        K  +        +   + + 
Sbjct: 154 LRVGNMDTFTKI-QRKDFAGLTFLEELEIDASDLQ-SYEPKSLK--------SIQNVSH- 202

Query: 692 EGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSI-- 749
                         L ++     +  +      D   + +  + L     D    + +  
Sbjct: 203 --------------LILHMKQHILLLEI---FVDVTSS-VECLELRDTDLDTFHFSELST 244

Query: 750 ------ANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVD-LTF 802
                       + + + + SL   ++  L  ++GL  L+ S N+    +P  + D LT 
Sbjct: 245 GETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTS 302

Query: 803 LEFFNVSNNNLT 814
           L+   +  N   
Sbjct: 303 LQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 77.9 bits (192), Expect = 2e-15
 Identities = 52/284 (18%), Positives = 100/284 (35%), Gaps = 24/284 (8%)

Query: 203 ISSPIPHSLANLSSLTLLSLSGCELRGR----IPSLLGNLTKLMYLDLSFNNLLGELPTS 258
           I S      +N +SL+      C+        IPS  G    +  LDLS N +     + 
Sbjct: 14  IISLSKEESSNQASLSCDRNGICKGSSGSLNSIPS--GLTEAVKSLDLSNNRITYISNSD 71

Query: 259 IGNLDCLKRLDISWNELSGELPASI-GNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLS 317
           +     L+ L ++ N ++  +      +L SLE L+LS N     +       + L +L+
Sbjct: 72  LQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130

Query: 318 LASNDFSGELPAS-FGNLRSLEGLDISECKFSSQIPS-SLRNLAQLKFLEFSHNNFSGPI 375
           L  N +      S F +L  L+ L +      ++I       L  L+ LE   ++     
Sbjct: 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS-Y 189

Query: 376 DLDMFLVNFKHLEHLSLSSNRLSLFTKAIFN-----TSQKFNFVGLRSCNLNEFP----N 426
           +      + +++ HL L   +  L  +   +        +     L + + +E      N
Sbjct: 190 EPKSLK-SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN 248

Query: 427 FLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFL 470
            L  +     + ++   +   +        +     L  S N L
Sbjct: 249 SLIKKFTFRNVKITDESLFQVMKLLNQISGLL---ELEFSRNQL 289

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 50/311 (16%), Positives = 97/311 (31%), Gaps = 62/311 (19%)

Query: 488 TLDLSYNYLQGPLPVPPPQTKHYLV-------SNNSLTGKIPFWICNSSNSLEILDLSYN 540
           +LDLS N +               V       ++N +   I     +S  SLE LDLSYN
Sbjct: 56  SLDLSNNRIT----YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 541 NLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSG-RSLMMIDLSDNLLQGRIP-RS 598
            LS L        S  L+ L+L  N +      +  S    L ++ + +     +I  + 
Sbjct: 111 YLSNLSSSWFKPLS-SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 599 LVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRII 658
               + L+ L++  + +    P  L +++ ++ LIL   +   +            +  +
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL--LEIFVDVTSSVECL 227

Query: 659 DLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNK 718
           +L +              ++ +    T+ L                              
Sbjct: 228 ELRDTDLDTFH-------FSELSTGETNSLIKKF-------------------------- 254

Query: 719 GQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTG 778
                          V ++      ++   +  + GL  L  + N L          LT 
Sbjct: 255 -----------TFRNVKITDESL-FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTS 302

Query: 779 LESLDLSNNKF 789
           L+ + L  N +
Sbjct: 303 LQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 47/262 (17%), Positives = 87/262 (33%), Gaps = 22/262 (8%)

Query: 570 SIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLREL 629
           SIP       ++  +DLS+N +       L  C +L+ L L +N I+        +L  L
Sbjct: 45  SIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102

Query: 630 NVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELR 689
             L L  N L  +    +       L  ++L  N +     +  F     +Q++    + 
Sbjct: 103 EHLDLSYNYLSNL--SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160

Query: 690 YMEGMIYPFA---LVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIP 746
                I       L     L I    L         S   + N ++ +IL   +    + 
Sbjct: 161 TFT-KIQRKDFAGLTFLEELEIDASDLQSYEPK---SLKSIQN-VSHLILHMKQHILLLE 215

Query: 747 TSIANLKGLQVLSLANNSLHGHILSCL--------GNLTGLESLDLSNNKFSGQIPQQLV 798
             +     ++ L L +  L     S L               ++ +++     Q+ + L 
Sbjct: 216 IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLN 274

Query: 799 DLTFLEFFNVSNNNLTGPIPQG 820
            ++ L     S N L   +P G
Sbjct: 275 QISGLLELEFSRNQLKS-VPDG 295

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 43/237 (18%), Positives = 84/237 (35%), Gaps = 34/237 (14%)

Query: 603 SSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSN 662
            ++K LDL NN+I+    S L     L  L+L SN ++ +  E ++      L  +DLS 
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI--EEDSFSSLGSLEHLDLSY 109

Query: 663 NRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMM 722
           N  +  L S +F+          S L +               L +          G+  
Sbjct: 110 NYLS-NLSSSWFK--------PLSSLTF---------------LNLLGNPYKTL--GETS 143

Query: 723 SYDKVPNFLTGVILSSNRFDGEIPTSI-ANLKGLQVLSLANNSLHGHILSCLGNLTGLES 781
            +  +   L  + + +     +I     A L  L+ L +  + L  +    L ++  +  
Sbjct: 144 LFSHLTK-LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202

Query: 782 LDLSNNKFSGQIPQQLVD-LTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGL 837
           L L   +    + +  VD  + +E   + + +L       ++  T +  S       
Sbjct: 203 LILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDT--FHFSELSTGETNSLIKKFTF 256

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 92.7 bits (231), Expect = 9e-21
 Identities = 51/224 (22%), Positives = 80/224 (35%), Gaps = 14/224 (6%)

Query: 151 QIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHS 210
            +P  I   +    + L  N    +  +   +         NL  L L    ++     +
Sbjct: 25  AVPVGIP--AASQRIFLHGN---RISHVPAASFRAC----RNLTILWLHSNVLARIDAAA 75

Query: 211 LANLSSLTLLSLSG-CELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSI-GNLDCLKRL 268
              L+ L  L LS   +LR   P+    L +L  L L     L EL   +   L  L+ L
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYL 134

Query: 269 DISWNELSGELPASI-GNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGEL 327
            +  N L   LP     +L +L  L L  NR       +      L  L L  N  +   
Sbjct: 135 YLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193

Query: 328 PASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNF 371
           P +F +L  L  L +     S+    +L  L  L++L  + N +
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 76.6 bits (189), Expect = 3e-15
 Identities = 48/206 (23%), Positives = 72/206 (34%), Gaps = 27/206 (13%)

Query: 89  KLDLSNSCLQGFINSSSGLFK-LVHLEWLDLAFNYFICSEIPPEI-INLSRLSYLNLSSA 146
           ++ L  + +    +  +  F+   +L  L L  N    + I       L+ L  L+LS  
Sbjct: 36  RIFLHGNRIS---HVPAASFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSDN 90

Query: 147 GFFGQIPSEILE-LSNLVSLDLSHN--------SYYNLIELKEPNLGN---------LVK 188
                +       L  L +L L            +  L  L+   L +           +
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 189 KLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSF 248
            L NL  L L G  ISS    +   L SL  L L    +    P    +L +LM L L  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF- 209

Query: 249 NNLLGELPTSI-GNLDCLKRLDISWN 273
            N L  LPT     L  L+ L ++ N
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.9 bits (177), Expect = 7e-14
 Identities = 48/302 (15%), Positives = 77/302 (25%), Gaps = 84/302 (27%)

Query: 513 SNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIP 572
               L   +P        + + + L  N +S +          +L+IL L  N       
Sbjct: 19  PQQGLQ-AVP---VGIPAASQRIFLHGNRISHVPAASFRACR-NLTILWLHSNVLARIDA 73

Query: 573 QTFLSGRSLMMIDLSDNLLQGRIP-RSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNV 631
             F     L  +DLSDN     +   +      L  L L    +        G  R L  
Sbjct: 74  AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGP--GLFRGL-- 128

Query: 632 LILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYM 691
                                  L+ + L +N     LP   F+        +   L ++
Sbjct: 129 ---------------------AALQYLYLQDNALQ-ALPDDTFR--------DLGNLTHL 158

Query: 692 EGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIAN 751
                                                       L  NR       +   
Sbjct: 159 F-------------------------------------------LHGNRISSVPERAFRG 175

Query: 752 LKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNN 811
           L  L  L L  N +         +L  L +L L  N  S    + L  L  L++  +++N
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

Query: 812 NL 813
             
Sbjct: 236 PW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 39/207 (18%), Positives = 69/207 (33%), Gaps = 32/207 (15%)

Query: 504 PPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQ 563
           P  ++   +  N ++  +P     +  +L IL L  N L+ +        +  L  LDL 
Sbjct: 31  PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA-LLEQLDLS 88

Query: 564 HNKFCGSIPQTFLSG-RSLMMIDLSDNLLQGRIP-------------------------R 597
            N    S+      G   L  + L    LQ  +                           
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDD 147

Query: 598 SLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRI 657
           +  +  +L  L L  N+IS         L  L+ L+L  N++  +   P+       L  
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV--HPHAFRDLGRLMT 205

Query: 658 IDLSNNRFTGKLPSKYFQCWNAMQVVN 684
           + L  N  +  LP++      A+Q + 
Sbjct: 206 LYLFANNLS-ALPTEALAPLRALQYLR 231

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 50/258 (19%), Positives = 73/258 (28%), Gaps = 55/258 (21%)

Query: 310 FTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHN 369
                 + L  N  S    ASF   R+L  L +     +    ++   LA L+ L+ S N
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 370 NFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFP-NFL 428
                +D   F      L  L L    L      +F       ++ L+   L   P +  
Sbjct: 91  AQLRSVDPATF-HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 429 KNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYL-NLSHNFLIGFYQHPMFFPRNYDGF 487
           ++   L  L L  N+I        +      F  L +L                      
Sbjct: 150 RDLGNLTHLFLHGNRISS------VPERA--FRGLHSLDR-------------------- 181

Query: 488 TLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLP 547
            L L  N +               V  ++               L  L L  NNLS L  
Sbjct: 182 -LLLHQNRVAH-------------VHPHAFRD---------LGRLMTLYLFANNLSALPT 218

Query: 548 QCLDNFSDHLSILDLQHN 565
           + L      L  L L  N
Sbjct: 219 EALAPLR-ALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 45/221 (20%), Positives = 65/221 (29%), Gaps = 36/221 (16%)

Query: 425 PNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNY 484
               +    L +L L  N +            +     L+LS N  +       F     
Sbjct: 49  AASFRACRNLTILWLHSNVLARIDAAAFT--GLALLEQLDLSDNAQLRSVDPATF----- 101

Query: 485 DGFT----LDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYN 540
            G      L L    LQ              +      G           +L+ L L  N
Sbjct: 102 HGLGRLHTLHLDRCGLQ-------------ELGPGLFRG---------LAALQYLYLQDN 139

Query: 541 NLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSG-RSLMMIDLSDNLLQGRIPRSL 599
            L  L      +   +L+ L L  N+   S+P+    G  SL  + L  N +    P + 
Sbjct: 140 ALQALPDDTFRDLG-NLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 600 VNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLH 640
            +   L  L L  N +S      L  LR L  L L  N   
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 1/89 (1%)

Query: 727 VPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSN 786
           +P     + L  NR       S    + L +L L +N L     +    L  LE LDLS+
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 787 NKFSGQIPQQ-LVDLTFLEFFNVSNNNLT 814
           N     +       L  L   ++    L 
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 2/85 (2%)

Query: 731 LTGVILSSNRFDGEIPTSI-ANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKF 789
           L  + L       E+   +   L  LQ L L +N+L         +L  L  L L  N+ 
Sbjct: 107 LHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165

Query: 790 SGQIPQQLVDLTFLEFFNVSNNNLT 814
           S    +    L  L+   +  N + 
Sbjct: 166 SSVPERAFRGLHSLDRLLLHQNRVA 190

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 93.9 bits (234), Expect = 3e-20
 Identities = 86/474 (18%), Positives = 151/474 (31%), Gaps = 80/474 (16%)

Query: 215 SSLTLLSLSGCEL-RGRIPSLLGNLTKLMYLDLSFNNL----LGELPTSIGNLDCLKRLD 269
             +  L +   EL   R   LL  L +   + L    L      ++ +++     L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 270 ISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGE--- 326
           +  NEL             +  +   L     +TP       ++  LSL +   +G    
Sbjct: 63  LRSNELGDV---------GVHCVLQGL-----QTPS-----CKIQKLSLQNCCLTGAGCG 103

Query: 327 -LPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQ--------LKFLEFSHNNFS--GPI 375
            L ++   L +L+ L +S+        + L+ L +        L+ L+  + + S     
Sbjct: 104 VLSSTLRTLPTLQELHLSDNLLG---DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160

Query: 376 DLDMFLVNFKHLEHLSLSSNRLS-----LFTKAIFNTSQKFNFVGLRSCNLNE-----FP 425
            L   L      + L++S+N ++     +  + + ++  +   + L SC +         
Sbjct: 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220

Query: 426 NFLKNQHYLEVLDLSCNKIHGKVPKWLIE---PSMQNFSYLNLSHNFL--IGFYQHPMFF 480
             + ++  L  L L  NK+       L             L +    +   G        
Sbjct: 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280

Query: 481 PRNYDGFTLDLSYNYLQGP--------LPVPPPQTKHYLVSNNSLTGKIPFWICN---SS 529
                   L L+ N L           L  P  Q +   V + S T        +    +
Sbjct: 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340

Query: 530 NSLEILDLSYNNLSG----LLPQCLDNFSDHLSILDLQHNKF----CGSIPQTFLSGRSL 581
             L  L +S N L       L Q L      L +L L         C S+  T L+  SL
Sbjct: 341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400

Query: 582 MMIDLSDNLLQGRIPRSL-----VNCSSLKFLDLGNNQISGTFPSWLGTLRELN 630
             +DLS+N L       L          L+ L L +   S      L  L +  
Sbjct: 401 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 454

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 74.6 bits (184), Expect = 5e-14
 Identities = 80/469 (17%), Positives = 145/469 (30%), Gaps = 100/469 (21%)

Query: 265 LKRLDISWNELSGE-LPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDF 323
           ++ LDI   ELS       +  L   + + L                T      ++S   
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-----------GLTEARCKDISS--- 50

Query: 324 SGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQ--------LKFLEFSHNNFS--G 373
                 +     +L  L++   +        +  + Q        ++ L   +   +  G
Sbjct: 51  ------ALRVNPALAELNLRSNELG---DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG 101

Query: 374 PIDLDMFLVNFKHLEHLSLSSNRLS-----LFTKAIFNTSQKFNFVGLRSCNLNE----- 423
              L   L     L+ L LS N L      L  + + +   +   + L  C+L+      
Sbjct: 102 CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161

Query: 424 FPNFLKNQHYLEVLDLSCNKIHGKVPKWL---IEPSMQNFSYLNLSHNFL-------IGF 473
             + L+ +   + L +S N I+    + L   ++ S      L L    +       +  
Sbjct: 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221

Query: 474 YQHPMFFPRNYDGFTLDLSYN--------YLQGPLPVPPPQTKHYLVSNNSLTGKIPFWI 525
                          L L  N         L   L  P  + +   +    +T K    +
Sbjct: 222 I-----VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL 276

Query: 526 CN---SSNSLEILDLSYNNLSG----LLPQCLDNFSDHLSILDLQHNKF----CGSIPQT 574
           C    +  SL+ L L+ N L      LL + L      L  L ++   F    C      
Sbjct: 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 336

Query: 575 FLSGRSLMMIDLSDNLLQGRIPRSL-----VNCSSLKFLDLGNNQIS----GTFPSWLGT 625
               R L+ + +S+N L+    R L        S L+ L L +  +S     +  + L  
Sbjct: 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 396

Query: 626 LRELNVLILKSNKLH--------GMIREPNTGCGFPELRIIDLSNNRFT 666
              L  L L +N L           +R+P        L  + L +  ++
Sbjct: 397 NHSLRELDLSNNCLGDAGILQLVESVRQPGCL-----LEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 74.2 bits (183), Expect = 6e-14
 Identities = 75/409 (18%), Positives = 133/409 (32%), Gaps = 60/409 (14%)

Query: 90  LDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFI---CSEIPPEIINLSRLSYLNLSS- 145
           LD+    L      +  L  L   + + L         C +I   +     L+ LNL S 
Sbjct: 8   LDIQCEEL-SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 66

Query: 146 ----AGFFGQIPSEILELSN--LVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALG 199
                G       + L+  +  +  L L +     L       L + ++ L  L+EL L 
Sbjct: 67  ELGDVGV--HCVLQGLQTPSCKIQKLSLQNC---CLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 200 GVTISSPIPHSLA-----NLSSLTLLSLSGCELRGR----IPSLLGNLTKLMYLDLSFNN 250
              +       L          L  L L  C L       + S+L        L +S N+
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 251 LLGE----LPTSIGNLDC-LKRLDISWNELSGE----LPASIGNLASLEQLELSLNRFRG 301
           +       L   + +  C L+ L +    ++ +    L   + + ASL +L L  N+   
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241

Query: 302 KTPHSMGNF-----TRLYWLSLASNDFSGE----LPASFGNLRSLEGLDISECKFS---- 348
                +        +RL  L +     + +    L        SL+ L ++  +      
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301

Query: 349 SQIPSSLRN-LAQLKFLEFSHNNFS--GPIDLDMFLVNFKHLEHLSLSSNRLS-----LF 400
             +  +L     QL+ L     +F+          L   + L  L +S+NRL        
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361

Query: 401 TKAIFNTSQKFNFVGLRSCNLNE-----FPNFLKNQHYLEVLDLSCNKI 444
            + +         + L  C++++         L   H L  LDLS N +
Sbjct: 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 68.8 bits (169), Expect = 3e-12
 Identities = 74/378 (19%), Positives = 109/378 (28%), Gaps = 72/378 (19%)

Query: 335 RSLEGLDISECKFSSQ-IPSSLRNLAQLKFLEFSHNNFS--GPIDLDMFLVNFKHLEHLS 391
             ++ LDI   + S       L  L Q + +       +     D+   L     L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 392 LSSNRLS-----LFTKAIFNTSQKFNFVGLRSCNLNE-----FPNFLKNQHYLEVLDLSC 441
           L SN L         + +   S K   + L++C L         + L+    L+ L LS 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 442 NKIHGKVPKWLIEPSMQNFS---YLNLSHNFLIGFYQHPMF--FPRNYDGFTLDLSYNYL 496
           N +     + L E  +        L L +  L      P+        D   L +S N +
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 497 QGP--------LPVPPPQTKHYLVSNNSLTGKIPFWICN---SSNSLEILDLSYNNLSG- 544
                      L   P Q +   + +  +T      +C    S  SL  L L  N L   
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242

Query: 545 ---LLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVN 601
               L   L + S  L  L +           T      L               R L  
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIWECGI------TAKGCGDLC--------------RVLRA 282

Query: 602 CSSLKFLDLGNNQISGTFPSWLGTLRE-----LNVLILKSNKLHGMIREPNTGCGF---- 652
             SLK L L  N++       L          L  L +KS             C      
Sbjct: 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT------AACCSHFSSV 336

Query: 653 ----PELRIIDLSNNRFT 666
                 L  + +SNNR  
Sbjct: 337 LAQNRFLLELQISNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 52.3 bits (126), Expect = 4e-07
 Identities = 54/314 (17%), Positives = 96/314 (30%), Gaps = 68/314 (21%)

Query: 528 SSNSLEILDLSYNNLSG----LLPQCLDNFSDHLSILDLQHNKF----CGSIPQTFLSGR 579
            + +L  L+L  N L       + Q L   S  +  L LQ+       CG +  T  +  
Sbjct: 54  VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP 113

Query: 580 SLMMIDLSDNLLQGRIPRSLV-----NCSSLKFLDLGNNQISGTFPSWLGTLRELNVLIL 634
           +L  + LSDNLL     + L          L+ L L    +S      L ++       L
Sbjct: 114 TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV-------L 166

Query: 635 KSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGM 694
           ++                P+ + + +SNN           +        +  +L      
Sbjct: 167 RAK---------------PDFKELTVSNNDINEAG----VRVLCQGLKDSPCQLEA---- 203

Query: 695 IYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGE-----IPTSI 749
                      L +    +T  N   +         L  + L SN+          P  +
Sbjct: 204 -----------LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL 252

Query: 750 ANLKGLQVLSLANNSLH----GHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDL----- 800
                L+ L +    +     G +   L     L+ L L+ N+   +  + L +      
Sbjct: 253 HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPG 312

Query: 801 TFLEFFNVSNNNLT 814
             LE   V + + T
Sbjct: 313 CQLESLWVKSCSFT 326

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 50.3 bits (121), Expect = 2e-06
 Identities = 51/243 (20%), Positives = 85/243 (34%), Gaps = 32/243 (13%)

Query: 86  HVIKLDLSNSCL--QGFINSSSGLFK-LVHLEWLDLAFNYF---ICSEIPPEIINLSRLS 139
              +L +SN+ +   G      GL      LE L L         C ++   + + + L 
Sbjct: 171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 230

Query: 140 YLNLSS-----AGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLK 194
            L L S      G     P  +   S L +L +       +      +L  +++   +LK
Sbjct: 231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC---GITAKGCGDLCRVLRAKESLK 287

Query: 195 ELALGGVTISSPIPHSLANL-----SSLTLLSLSGCELRGR----IPSLLGNLTKLMYLD 245
           EL+L G  +       L          L  L +  C           S+L     L+ L 
Sbjct: 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 347

Query: 246 LSFNNLLGE----LPTSIGNLDC-LKRLDISWNELSGE----LPASIGNLASLEQLELSL 296
           +S N L       L   +G     L+ L ++  ++S      L A++    SL +L+LS 
Sbjct: 348 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN 407

Query: 297 NRF 299
           N  
Sbjct: 408 NCL 410

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 89.7 bits (223), Expect = 1e-19
 Identities = 59/281 (20%), Positives = 112/281 (39%), Gaps = 33/281 (11%)

Query: 158 ELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSL 217
            L+N + +    ++  + +   +         L  +  L+  G  +++     +  L++L
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQAD---------LDGITTLSAFGTGVTTIEG--VQYLNNL 65

Query: 218 TLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSG 277
             L L   ++   +  L  NLTK+  L+LS N L  +  ++I  L  +K LD++  +++ 
Sbjct: 66  IGLELKDNQIT-DLAPL-KNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITD 121

Query: 278 ELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASN---DFSGELPASFGNL 334
                +  L++L+ L L LN+    +P  +   T L +LS+ +    D +        NL
Sbjct: 122 --VTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-----LANL 172

Query: 335 RSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSS 394
             L  L   + K S    S L +L  L  +   +N  S   D+   L N  +L  ++L++
Sbjct: 173 SKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQIS---DVS-PLANTSNLFIVTLTN 226

Query: 395 NRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLE 435
             ++       N     N V   S           N  Y  
Sbjct: 227 QTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYAS 267

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 82.8 bits (205), Expect = 2e-17
 Identities = 62/313 (19%), Positives = 114/313 (36%), Gaps = 30/313 (9%)

Query: 101 INSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELS 160
           IN       L +   +    +    ++      +L  ++ L+    G        +  L+
Sbjct: 9   INVIFPDPALANAIKIAAGKSNV--TDTVT-QADLDGITTLSAFGTGV--TTIEGVQYLN 63

Query: 161 NLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLL 220
           NL+ L+L  N   +L  L         K LT + EL L G  + +     +A L S+  L
Sbjct: 64  NLIGLELKDNQITDLAPL---------KNLTKITELELSGNPLKNVSA--IAGLQSIKTL 112

Query: 221 SLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELP 280
            L+  ++    P  L  L+ L  L L   N +  +   +  L  L+ L I   ++S +L 
Sbjct: 113 DLTSTQITDVTP--LAGLSNLQVLYLD-LNQITNIS-PLAGLTNLQYLSIGNAQVS-DLT 167

Query: 281 ASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGL 340
             + NL+ L  L+   N+    +P  + +   L  + L +N  S   P    N  +L  +
Sbjct: 168 P-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIV 222

Query: 341 DISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLF 400
            ++    ++Q      NL     +       SG       + +       +L+ N  S  
Sbjct: 223 TLTNQTITNQPVFYNNNLVVPNVV----KGPSGAPIAPATISDNGTYASPNLTWNLTSFI 278

Query: 401 TKAIFNTSQKFNF 413
               +  +Q   F
Sbjct: 279 NNVSYTFNQSVTF 291

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 80.9 bits (200), Expect = 1e-16
 Identities = 55/254 (21%), Positives = 99/254 (38%), Gaps = 32/254 (12%)

Query: 86  HVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSS 145
           + IK+    S     +  +     L  +  L         + I   +  L+ L  L L  
Sbjct: 20  NAIKIAAGKS----NVTDTVTQADLDGITTLSAFGTGV--TTIEG-VQYLNNLIGLELKD 72

Query: 146 AGFFGQI--PSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTI 203
                QI   + +  L+ +  L+LS N   N+  +           L ++K L L    I
Sbjct: 73  ----NQITDLAPLKNLTKITELELSGNPLKNVSAI---------AGLQSIKTLDLTSTQI 119

Query: 204 SSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLD 263
           +   P  LA LS+L +L L   ++    P  L  LT L YL +    +     T + NL 
Sbjct: 120 TDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQV--SDLTPLANLS 173

Query: 264 CLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDF 323
            L  L    N++S ++   + +L +L ++ L  N+    +P  + N + L+ ++L +   
Sbjct: 174 KLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTI 229

Query: 324 SGELPASFGNLRSL 337
           + +      NL   
Sbjct: 230 TNQPVFYNNNLVVP 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 80.5 bits (199), Expect = 1e-16
 Identities = 52/258 (20%), Positives = 108/258 (41%), Gaps = 28/258 (10%)

Query: 86  HVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSS 145
            +  L    +     + +  G+  L +L  L+L  N    +++ P + NL++++ L LS 
Sbjct: 42  GITTLSAFGT----GVTTIEGVQYLNNLIGLELKDNQ--ITDLAP-LKNLTKITELELSG 94

Query: 146 AGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISS 205
                +  S I  L ++ +LDL+     ++  L           L+NL+ L L    I++
Sbjct: 95  NPL--KNVSAIAGLQSIKTLDLTSTQITDVTPL---------AGLSNLQVLYLDLNQITN 143

Query: 206 PIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCL 265
             P  LA L++L  LS+   ++    P  L NL+KL  L    +N + ++   + +L  L
Sbjct: 144 ISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKAD-DNKISDIS-PLASLPNL 197

Query: 266 KRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSG 325
             + +  N++S   P  + N ++L  + L+      +      N        +     + 
Sbjct: 198 IEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVP--NVVKGPSGAP 253

Query: 326 ELPASFGNLRSLEGLDIS 343
             PA+  +  +    +++
Sbjct: 254 IAPATISDNGTYASPNLT 271

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 73.6 bits (181), Expect = 3e-14
 Identities = 42/236 (17%), Positives = 92/236 (38%), Gaps = 25/236 (10%)

Query: 235 LGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLEL 294
              L   + +    +N+      +  +LD +  L      ++  +   +  L +L  LEL
Sbjct: 15  DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLEL 70

Query: 295 SLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSS 354
             N+     P  + N T++  L L+ N       ++   L+S++ LD++  + +   P  
Sbjct: 71  KDNQITDLAP--LKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDVTP-- 124

Query: 355 LRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFV 414
           L  L+ L+ L    N  +   ++   L    +L++LS+ + ++S  T        K   +
Sbjct: 125 LAGLSNLQVLYLDLNQIT---NIS-PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTL 178

Query: 415 GLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEP--SMQNFSYLNLSHN 468
                 +++    L +   L  + L  N+I        + P  +  N   + L++ 
Sbjct: 179 KADDNKISDISP-LASLPNLIEVHLKNNQISD------VSPLANTSNLFIVTLTNQ 227

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 46/291 (15%), Positives = 99/291 (34%), Gaps = 49/291 (16%)

Query: 531 SLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNL 590
           +   +    +N++  +     +  D ++ L              +L+  +L+ ++L DN 
Sbjct: 20  NAIKIAAGKSNVTDTVT--QADL-DGITTLSAFGTGVTTIEGVQYLN--NLIGLELKDNQ 74

Query: 591 LQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGC 650
           +   +   L N + +  L+L  N +       +  L+ +  L L S ++  +        
Sbjct: 75  IT-DLA-PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTPLAG--- 127

Query: 651 GFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYD 710
               L+++ L  N                 Q+ N S L  +  + Y         L I +
Sbjct: 128 -LSNLQVLYLDLN-----------------QITNISPLAGLTNLQY---------LSIGN 160

Query: 711 YSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHIL 770
             ++      +     +   LT +    N+   +I   +A+L  L  + L NN +    +
Sbjct: 161 AQVS-----DLTPLANLSK-LTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQISD--V 210

Query: 771 SCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGN 821
           S L N + L  + L+N   + Q      +L         +     P    +
Sbjct: 211 SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISD 261

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 53/289 (18%), Positives = 93/289 (32%), Gaps = 50/289 (17%)

Query: 353 SSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFN 412
                LA    +    +N +  +       +   +  LS     ++  T           
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVTQA----DLDGITTLSAFGTGVT--TIEGVQYLNNLI 66

Query: 413 FVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYL-NLSHNFLI 471
            + L+   + +    LKN   +  L+LS N +           ++   + L ++      
Sbjct: 67  GLELKDNQITDLAP-LKNLTKITELELSGNPLK----------NVSAIAGLQSIK----- 110

Query: 472 GFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYL-VSNNSLTGKIPFWICNSSN 530
                           TLDL+   +    P+        L +  N +T   P        
Sbjct: 111 ----------------TLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPL---AGLT 151

Query: 531 SLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNL 590
           +L+ L +    +S L P  L N S  L+ L    NK     P   L   +L+ + L +N 
Sbjct: 152 NLQYLSIGNAQVSDLTP--LANLS-KLTTLKADDNKISDISPLASLP--NLIEVHLKNNQ 206

Query: 591 LQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKL 639
           +    P  L N S+L  + L N  I+     +   L   NV+   S   
Sbjct: 207 ISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 31/154 (20%), Positives = 64/154 (41%), Gaps = 16/154 (10%)

Query: 513 SNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIP 572
             +++T  +        + +  L      ++ +  + +   + +L  L+L+ N+     P
Sbjct: 27  GKSNVTDTVTQ---ADLDGITTLSAFGTGVTTI--EGVQYLN-NLIGLELKDNQITDLAP 80

Query: 573 QTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVL 632
              L+   +  ++LS N L  +   ++    S+K LDL + QI+   P  L  L  L VL
Sbjct: 81  LKNLT--KITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVL 134

Query: 633 ILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFT 666
            L  N+    I   +   G   L+ + + N + +
Sbjct: 135 YLDLNQ----ITNISPLAGLTNLQYLSIGNAQVS 164

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 51.2 bits (123), Expect = 7e-07
 Identities = 46/247 (18%), Positives = 85/247 (34%), Gaps = 39/247 (15%)

Query: 428 LKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGF 487
                    +    + +   V     +  +   + L+     +              +G 
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT----QADLDGITTLSAFGTGV-----------TTIEGV 59

Query: 488 -------TLDLSYNYLQGPLPVPP-PQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSY 539
                   L+L  N +    P+    +     +S N L             S++ LDL+ 
Sbjct: 60  QYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAI---AGLQSIKTLDLTS 116

Query: 540 NNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSL 599
             ++ + P  L   S +L +L L  N+     P   L+  +L  + + +  +    P  L
Sbjct: 117 TQITDVTP--LAGLS-NLQVLYLDLNQITNISPLAGLT--NLQYLSIGNAQVSDLTP--L 169

Query: 600 VNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIID 659
            N S L  L   +N+IS   P  L +L  L  + LK+N+    I + +       L I+ 
Sbjct: 170 ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQ----ISDVSPLANTSNLFIVT 223

Query: 660 LSNNRFT 666
           L+N   T
Sbjct: 224 LTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 33/203 (16%), Positives = 70/203 (34%), Gaps = 44/203 (21%)

Query: 612 NNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPS 671
              I+  FP     L     +    +     + +  T      +  +       T     
Sbjct: 6   PTAINVIFP--DPALANAIKIAAGKSN----VTDTVTQADLDGITTLSAFGTGVT----- 54

Query: 672 KYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFL 731
                           ++Y+  +I          L + D      N+   ++  K    +
Sbjct: 55  ------------TIEGVQYLNNLIG---------LELKD------NQITDLAPLKNLTKI 87

Query: 732 TGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSG 791
           T + LS N    +  ++IA L+ ++ L L +  +    ++ L  L+ L+ L L  N+ + 
Sbjct: 88  TELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITN 143

Query: 792 QIPQQLVDLTFLEFFNVSNNNLT 814
             P  L  LT L++ ++ N  ++
Sbjct: 144 ISP--LAGLTNLQYLSIGNAQVS 164

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 86.6 bits (215), Expect = 2e-19
 Identities = 33/172 (19%), Positives = 73/172 (42%), Gaps = 14/172 (8%)

Query: 155 EILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANL 214
              ++++L  + L++ +  +L  +         +   N+K+L +  +  ++  P  ++ L
Sbjct: 39  TEAQMNSLTYITLANINVTDLTGI---------EYAHNIKDLTINNIHATNYNP--ISGL 87

Query: 215 SSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNE 274
           S+L  L + G ++       L  LT L  LD+S +     + T I  L  +  +D+S+N 
Sbjct: 88  SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147

Query: 275 LSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGE 326
              ++   +  L  L+ L +  +         + +F +L  L   S    G+
Sbjct: 148 AITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 85.8 bits (213), Expect = 3e-19
 Identities = 37/165 (22%), Positives = 72/165 (43%), Gaps = 14/165 (8%)

Query: 134 NLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNL 193
            ++ L+Y+ L++        + I    N+  L +++    N   +           L+NL
Sbjct: 42  QMNSLTYITLANINV--TDLTGIEYAHNIKDLTINNIHATNYNPIS---------GLSNL 90

Query: 194 KELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLG 253
           + L + G  ++S    +L+ L+SLTLL +S       I + +  L K+  +DLS+N  + 
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 254 ELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNR 298
           ++   +  L  LK L+I ++ +       I +   L QL      
Sbjct: 151 DI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 79.2 bits (196), Expect = 7e-17
 Identities = 37/221 (16%), Positives = 75/221 (33%), Gaps = 37/221 (16%)

Query: 180 EPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSL--LGN 237
           + +  N+    +  K    G +  SS    + A ++SLT ++L+       +  L  +  
Sbjct: 9   KASQDNVNIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANIN----VTDLTGIEY 64

Query: 238 LTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLN 297
              +  L ++  +        I  L  L+RL I   +++ +   ++  L SL  L++S +
Sbjct: 65  AHNIKDLTINNIHA--TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 298 RFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRN 357
                                        +      L  +  +D+S     + I   L+ 
Sbjct: 123 AH------------------------DDSILTKINTLPKVNSIDLSYNGAITDI-MPLKT 157

Query: 358 LAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLS 398
           L +LK L    +      D    + +F  L  L   S  + 
Sbjct: 158 LPELKSLNIQFDGVH---DYR-GIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 29/208 (13%), Positives = 67/208 (32%), Gaps = 35/208 (16%)

Query: 237 NLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSL 296
                +   L  ++       +   ++ L  + ++   ++ +L   I    +++ L ++ 
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT-DLTG-IEYAHNIKDLTINN 75

Query: 297 NRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLR 356
                  P  +   + L  L +   D + +   +   L SL  LDIS       I + + 
Sbjct: 76  IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 357 NLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGL 416
            L ++  ++ S+N     I     L     L+ L++  + +  +                
Sbjct: 134 TLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYR--------------- 175

Query: 417 RSCNLNEFPNFLKNQHYLEVLDLSCNKI 444
               + +FP        L  L      I
Sbjct: 176 ---GIEDFPK-------LNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.1 bits (175), Expect = 4e-14
 Identities = 26/163 (15%), Positives = 54/163 (33%), Gaps = 17/163 (10%)

Query: 89  KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGF 148
            + L+N      +   +G+    +++ L +   +   +   P I  LS L  L +     
Sbjct: 48  YITLANI----NVTDLTGIEYAHNIKDLTINNIHA--TNYNP-ISGLSNLERLRIMGKDV 100

Query: 149 FGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIP 208
                  +  L++L  LD+SH+      +     +      L  +  + L      + I 
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHS---AHDDSILTKINT----LPKVNSIDLSYNGAITDIM 153

Query: 209 HSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNL 251
             L  L  L  L++    +       + +  KL  L      +
Sbjct: 154 -PLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.4 bits (142), Expect = 8e-10
 Identities = 25/137 (18%), Positives = 57/137 (41%), Gaps = 8/137 (5%)

Query: 530 NSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDN 589
           NSL  + L+  N++ L    ++    ++  L + +       P + LS  +L  + +   
Sbjct: 44  NSLTYITLANINVTDLTG--IEYAH-NIKDLTINNIHATNYNPISGLS--NLERLRIMGK 98

Query: 590 LLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTG 649
            +      +L   +SL  LD+ ++    +  + + TL ++N + L  N     I +    
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA---ITDIMPL 155

Query: 650 CGFPELRIIDLSNNRFT 666
              PEL+ +++  +   
Sbjct: 156 KTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 25/138 (18%), Positives = 51/138 (36%), Gaps = 10/138 (7%)

Query: 531 SLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNL 590
           +++ L ++  + +   P  +   S +L  L +                 SL ++D+S + 
Sbjct: 67  NIKDLTINNIHATNYNP--ISGLS-NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123

Query: 591 LQGRIPRSLVNCSSLKFLDL-GNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTG 649
               I   +     +  +DL  N  I+   P  L TL EL  L ++ +     + +    
Sbjct: 124 HDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDG----VHDYRGI 177

Query: 650 CGFPELRIIDLSNNRFTG 667
             FP+L  +   +    G
Sbjct: 178 EDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 731 LTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFS 790
           LT + +S +  D  I T I  L  +  + L+ N     I   L  L  L+SL++  +   
Sbjct: 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVH 172

Query: 791 GQIPQQLVDLTFLEFFNVSNNNLTG 815
                 + D   L      +  + G
Sbjct: 173 DYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 2/83 (2%)

Query: 731 LTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFS 790
           +  + +++          I+ L  L+ L +    +    +  L  LT L  LD+S++   
Sbjct: 68  IKDLTINNIHA--TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 791 GQIPQQLVDLTFLEFFNVSNNNL 813
             I  ++  L  +   ++S N  
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 2/74 (2%)

Query: 747 TSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFF 806
           T I     ++ L++ N        + +  L+ LE L +     +      L  LT L   
Sbjct: 60  TGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117

Query: 807 NVSNNNLTGPIPQG 820
           ++S++     I   
Sbjct: 118 DISHSAHDDSILTK 131

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 16/142 (11%), Positives = 48/142 (33%), Gaps = 31/142 (21%)

Query: 330 SFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEH 389
           +   + SL  + ++    +    + +     +K L  ++ + +   + +  +    +LE 
Sbjct: 39  TEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHAT---NYN-PISGLSNLER 92

Query: 390 LSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVP 449
           L +    ++                       ++    L     L +LD+S +     + 
Sbjct: 93  LRIMGKDVT-----------------------SDKIPNLSGLTSLTLLDISHSAHDDSIL 129

Query: 450 KWLIEPSMQNFSYLNLSHNFLI 471
             +    +   + ++LS+N  I
Sbjct: 130 TKINT--LPKVNSIDLSYNGAI 149

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.4 bits (103), Expect = 9e-05
 Identities = 25/194 (12%), Positives = 56/194 (28%), Gaps = 37/194 (19%)

Query: 598 SLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRI 657
           +    +SL ++ L N  ++      +     +  L + +          N   G   L  
Sbjct: 39  TEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH----ATNYNPISGLSNLER 92

Query: 658 IDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSN 717
           + +     T                                 L    +L + D S +  +
Sbjct: 93  LRIMGKDVTSDKIP---------------------------NLSGLTSLTLLDISHSAHD 125

Query: 718 KGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLT 777
              +   + +P  +  + LS N    +I   +  L  L+ L++  + +H      + +  
Sbjct: 126 DSILTKINTLPK-VNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD--YRGIEDFP 181

Query: 778 GLESLDLSNNKFSG 791
            L  L   +    G
Sbjct: 182 KLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 18/132 (13%), Positives = 46/132 (34%), Gaps = 8/132 (6%)

Query: 488 TLDLSYNYLQGPLPVPPPQTKHYL-VSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLL 546
            L ++  +     P+        L +    +T      +   ++ L +LD+S++     +
Sbjct: 70  DLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTS-LTLLDISHSAHDDSI 128

Query: 547 PQCLDNFSDHLSILDLQHNKFCGSIPQTFLSG-RSLMMIDLSDNLLQGRIPRSLVNCSSL 605
              ++     ++ +DL +N     I    L     L  +++  + +       + +   L
Sbjct: 129 LTKINTLP-KVNSIDLSYNGAITDI--MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKL 183

Query: 606 KFLDLGNNQISG 617
             L   +  I G
Sbjct: 184 NQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 13/67 (19%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 748 SIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFN 807
           + A +  L  ++LAN ++    L+ +     ++ L ++N   +   P  +  L+ LE   
Sbjct: 39  TEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLR 94

Query: 808 VSNNNLT 814
           +   ++T
Sbjct: 95  IMGKDVT 101

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 89.8 bits (222), Expect = 1e-18
 Identities = 51/285 (17%), Positives = 97/285 (34%), Gaps = 25/285 (8%)

Query: 188 KKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLS 247
                  +  L   +++  +      L+S+  +  +  +++  +  +   L  +  L L+
Sbjct: 18  DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQGI-QYLPNVTKLFLN 73

Query: 248 FNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSM 307
            N L    P  + NL  L  L +  N++  +L  S+ +L  L+ L L  N         +
Sbjct: 74  GNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGISDING--L 127

Query: 308 GNFTRLYWLSLASN---DFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFL 364
            +  +L  L L +N   D +         L  L+ L + + + S      L  L +L+ L
Sbjct: 128 VHLPQLESLYLGNNKITDITV-----LSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNL 180

Query: 365 EFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEF 424
             S N+ S   DL   L   K+L+ L L S           +     N V     +L   
Sbjct: 181 YLSKNHIS---DLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT- 235

Query: 425 PNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNF 469
           P  + +    E  ++  +          I              + 
Sbjct: 236 PEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHG 280

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 87.9 bits (217), Expect = 5e-18
 Identities = 59/329 (17%), Positives = 104/329 (31%), Gaps = 82/329 (24%)

Query: 86  HVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSS 145
             IK +L        +  +    +L  ++ +    +         +I ++  + Y     
Sbjct: 22  ETIKDNLKKKS----VTDAVTQNELNSIDQIIANNS---------DIKSVQGIQY----- 63

Query: 146 AGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISS 205
                        L N+  L L+ N    L ++K       +  L NL  L L    I  
Sbjct: 64  -------------LPNVTKLFLNGN---KLTDIKP------LTNLKNLGWLFLDENKIKD 101

Query: 206 PIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCL 265
                L +L  L  LSL    +   I   L +L +L  L L  N +     T +  L  L
Sbjct: 102 LSS--LKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKI--TDITVLSRLTKL 155

Query: 266 KRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASN---D 322
             L +  N++S      I  LA L +L+                      L L+ N   D
Sbjct: 156 DTLSLEDNQIS-----DIVPLAGLTKLQ---------------------NLYLSKNHISD 189

Query: 323 FSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGP--IDLDMF 380
                      L++L+ L++   +  ++  +   NL     ++ +  +   P  I  D  
Sbjct: 190 LRA-----LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGD 244

Query: 381 LVNFKHLEHLSLSSNRLSLFTKAIFNTSQ 409
                   HL   +N +S          +
Sbjct: 245 YEKPNVKWHLPEFTNEVSFIFYQPVTIGK 273

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 83.2 bits (205), Expect = 1e-16
 Identities = 56/231 (24%), Positives = 90/231 (38%), Gaps = 28/231 (12%)

Query: 78  VECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSR 137
                    + ++  +NS     I S  G+  L ++  L L  N    ++I P + NL  
Sbjct: 36  AVTQNELNSIDQIIANNS----DIKSVQGIQYLPNVTKLFLNGNKL--TDIKP-LTNLKN 88

Query: 138 LSYLNLSSAGFFGQIP--SEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKE 195
           L +L L       +I   S + +L  L SL L HN    + ++    L +    L  L+ 
Sbjct: 89  LGWLFLDE----NKIKDLSSLKDLKKLKSLSLEHN---GISDI--NGLVH----LPQLES 135

Query: 196 LALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGEL 255
           L LG   I+      L+ L+ L  LSL   ++   I   L  LTKL  L LS  N + +L
Sbjct: 136 LYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLS-KNHISDL 190

Query: 256 PTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHS 306
             ++  L  L  L++   E   +      NL     ++ +          S
Sbjct: 191 R-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 240

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 80.2 bits (197), Expect = 1e-15
 Identities = 49/287 (17%), Positives = 99/287 (34%), Gaps = 29/287 (10%)

Query: 235 LGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLEL 294
                + +  +L   ++   +      L+ + ++  + +++   +   I  L ++ +L L
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFL 72

Query: 295 SLNRFRGKTPHSMGNFTRLYWLSLASN---DFSGELPASFGNLRSLEGLDISECKFSSQI 351
           + N+     P  + N   L WL L  N   D S        +L+ L+ L +     S   
Sbjct: 73  NGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSS-----LKDLKKLKSLSLEHNGISD-- 123

Query: 352 PSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKF 411
            + L +L QL+ L   +N  +   D+   L     L+ LSL  N++S           K 
Sbjct: 124 INGLVHLPQLESLYLGNNKIT---DIT-VLSRLTKLDTLSLEDNQISDIV--PLAGLTKL 177

Query: 412 NFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLI 471
             + L   ++++    L     L+VL+L   +   K           N    N   N   
Sbjct: 178 QNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPINHQ-----SNLVVPNTVKN-TD 230

Query: 472 GFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLT 518
           G    P     + D    ++ ++  +    V     +   +      
Sbjct: 231 GSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKAR 277

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 68.6 bits (167), Expect = 5e-12
 Identities = 43/309 (13%), Positives = 86/309 (27%), Gaps = 94/309 (30%)

Query: 333 NLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSL 392
                   ++ +   +     +   L  +  +  ++++      +   +    ++  L L
Sbjct: 19  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK---SVQ-GIQYLPNVTKLFL 72

Query: 393 SSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWL 452
           + N+L+                      L    N       L  L L  NKI        
Sbjct: 73  NGNKLTDIK------------------PLTNLKN-------LGWLFLDENKIK------- 100

Query: 453 IEPSMQNFSYL-NLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYL 511
               + +   L  L                       L L +N +               
Sbjct: 101 ---DLSSLKDLKKLKS---------------------LSLEHNGI--------------- 121

Query: 512 VSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSI 571
              + + G     + +    LE L L  N ++ +    L   +  L  L L+ N+    +
Sbjct: 122 ---SDING-----LVHLPQ-LESLYLGNNKITDITV--LSRLT-KLDTLSLEDNQISDIV 169

Query: 572 PQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNV 631
           P   L+   L  + LS N +     R+L    +L  L+L + +      +    L   N 
Sbjct: 170 PLAGLT--KLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 225

Query: 632 LILKSNKLH 640
           +      L 
Sbjct: 226 VKNTDGSLV 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.5 bits (159), Expect = 5e-11
 Identities = 47/293 (16%), Positives = 106/293 (36%), Gaps = 51/293 (17%)

Query: 532 LEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLL 591
           +         +  + P   D F+      +L+      ++ Q  L+  S+  I  +++ +
Sbjct: 1   MGETITVSTPIKQIFP--DDAFA-ETIKDNLKKKSVTDAVTQNELN--SIDQIIANNSDI 55

Query: 592 QGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCG 651
           +  +   +    ++  L L  N+++   P  L  L+ L  L L  NK    I++ ++   
Sbjct: 56  K-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK----IKDLSSLKD 107

Query: 652 FPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDY 711
             +L+ + L +N                  + + + L ++  +           L + + 
Sbjct: 108 LKKLKSLSLEHN-----------------GISDINGLVHLPQLES---------LYLGN- 140

Query: 712 SLTMSNKGQMMSY-DKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHIL 770
                NK   ++   ++   L  + L  N+   +I   +A L  LQ L L+ N +    L
Sbjct: 141 -----NKITDITVLSRLTK-LDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS--DL 190

Query: 771 SCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQF 823
             L  L  L+ L+L + +   +      +L        ++ +L  P    +  
Sbjct: 191 RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG 243

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.7 bits (144), Expect = 3e-09
 Identities = 56/360 (15%), Positives = 104/360 (28%), Gaps = 101/360 (28%)

Query: 261 NLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLAS 320
                 + ++    ++  +      L S++Q+  + +    K+   +     +  L L  
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNG 74

Query: 321 NDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMF 380
           N  +   P    NL++L  L + E K      SSL++L +LK L   HN  S   D++  
Sbjct: 75  NKLTDIKP--LTNLKNLGWLFLDENKIKD--LSSLKDLKKLKSLSLEHNGIS---DIN-G 126

Query: 381 LVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLS 440
           LV+   LE L L +N+++  T                          L     L+ L L 
Sbjct: 127 LVHLPQLESLYLGNNKITDIT-------------------------VLSRLTKLDTLSLE 161

Query: 441 CNKIHGKVPKWLIEPSMQNFSYL-NLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGP 499
            N+I            +   + L  L                       L LS N++   
Sbjct: 162 DNQIS----------DIVPLAGLTKLQ---------------------NLYLSKNHIS-- 188

Query: 500 LPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSI 559
                            L       +    N L++L+L              N     + 
Sbjct: 189 ----------------DLRA-----LAGLKN-LDVLELFSQECLNKPINHQSNLV-VPNT 225

Query: 560 LDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTF 619
           +           P+           ++  +L     P      S + +  +   +    F
Sbjct: 226 VKNTDGSLV--TPEIISDDGDYEKPNVKWHL-----PEFTNEVSFIFYQPVTIGKAKARF 278

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 57.4 bits (138), Expect = 1e-08
 Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 16/155 (10%)

Query: 512 VSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSI 571
           +   S+T  +     N  NS++ +  + +++  +  Q +     +++ L L  NK     
Sbjct: 28  LKKKSVTDAVTQ---NELNSIDQIIANNSDIKSV--QGIQYLP-NVTKLFLNGNKLTDIK 81

Query: 572 PQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNV 631
           P T L   +L  + L +N ++  +  SL +   LK L L +N IS    + L  L +L  
Sbjct: 82  PLTNLK--NLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLES 135

Query: 632 LILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFT 666
           L L +NK    I +        +L  + L +N+ +
Sbjct: 136 LYLGNNK----ITDITVLSRLTKLDTLSLEDNQIS 166

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 53.2 bits (127), Expect = 3e-07
 Identities = 52/331 (15%), Positives = 90/331 (27%), Gaps = 49/331 (14%)

Query: 428 LKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGF 487
                     +L    +   V +      + +   +  +++ +       + +  N    
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVTQ----NELNSIDQIIANNSDIKSV--QGIQYLPNVT-- 68

Query: 488 TLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSN--SLEILDLSYNNLSGL 545
            L L+ N L                            I   +N  +L  L L  N +  L
Sbjct: 69  KLFLNGNKLTD--------------------------IKPLTNLKNLGWLFLDENKIKDL 102

Query: 546 LPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSL 605
               L +    L  L L+HN          L    L  + L +N +       L   + L
Sbjct: 103 SS--LKDLK-KLKSLSLEHNGISDINGLVHLP--QLESLYLGNNKIT--DITVLSRLTKL 155

Query: 606 KFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRF 665
             L L +NQIS   P  L  L +L  L L  N     I +     G   L +++L +   
Sbjct: 156 DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH----ISDLRALAGLKNLDVLELFSQEC 209

Query: 666 TGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYD 725
             K  +          V NT        +I          +  +    T           
Sbjct: 210 LNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPV 269

Query: 726 KVPNFLTGVILSSNRFDGEIPTSIANLKGLQ 756
            +            +   E+ T   ++ G  
Sbjct: 270 TIGKAKARFHGRVTQPLKEVYTVSYDVDGTV 300

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.9 bits (202), Expect = 5e-17
 Identities = 51/313 (16%), Positives = 95/313 (30%), Gaps = 36/313 (11%)

Query: 315 WLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGP 374
           W S  +   + ++    G       L   + +      + +     LK L          
Sbjct: 24  WSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSR 83

Query: 375 IDLDMF-LVNFKHLEHLSLSSNRLS--LFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKN- 430
           I      ++    L+ L+L +  ++       +  T    N + LR+ +      +L   
Sbjct: 84  ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAEL 143

Query: 431 ----QHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIG-FYQHPMFFPRNYD 485
               +  L+VL ++            +       S L+LS N  +G         P  + 
Sbjct: 144 QQWLKPGLKVLSIAQAHSLN-FSCEQVR-VFPALSTLDLSDNPELGERGLISALCPLKFP 201

Query: 486 GF-TLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSG 544
               L L    +                   + +G            L+ LDLS+N+L  
Sbjct: 202 TLQVLALRNAGM------------------ETPSGVCSALAAARVQ-LQGLDLSHNSLRD 242

Query: 545 LLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSS 604
                  ++   L+ L+L        +P+   +   L ++DLS N L  R P        
Sbjct: 243 AAGAPSCDWPSQLNSLNLSFTGL-KQVPKGLPA--KLSVLDLSYNRLD-RNPSPD-ELPQ 297

Query: 605 LKFLDLGNNQISG 617
           +  L L  N    
Sbjct: 298 VGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.1 bits (200), Expect = 1e-16
 Identities = 56/332 (16%), Positives = 88/332 (26%), Gaps = 45/332 (13%)

Query: 345 CKFSSQIP--SSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTK 402
           C FS   P  SS  N      +E      S        L              + +   K
Sbjct: 15  CNFSDPKPDWSSAFNCLGAADVELYGGGRS--------LEYLLKRVDTEADLGQFTDIIK 66

Query: 403 AIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSY 462
           ++           + S  L      L     L+ L L   ++ G  P  L+E +  + + 
Sbjct: 67  SLSLKRLTVRAARIPSRILFGALRVLGISG-LQELTLENLEVTGTAPPPLLEATGPDLNI 125

Query: 463 LNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIP 522
           LNL +           +           L    +                +         
Sbjct: 126 LNLRNVSWATRDA---WLAELQQWLKPGLKVLSI----------------AQAHSLN-FS 165

Query: 523 FWICNSSNSLEILDLSYNNLSG---LLPQCLDNFSDHLSILDLQHNKFC---GSIPQTFL 576
                   +L  LDLS N   G   L+          L +L L++       G       
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225

Query: 577 SGRSLMMIDLSDNLLQGRIPRSL-VNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILK 635
           +   L  +DLS N L+           S L  L+L    +          L  L+   L 
Sbjct: 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLD---LS 282

Query: 636 SNKLHGMIREPNTGCGFPELRIIDLSNNRFTG 667
            N+L             P++  + L  N F  
Sbjct: 283 YNRLDRNPSP----DELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.9 bits (197), Expect = 2e-16
 Identities = 55/282 (19%), Positives = 91/282 (32%), Gaps = 44/282 (15%)

Query: 105 SGLFKLVHLEWLDLAFNYFICSEIP--PEIINLSRLSYLNLSSAGFFGQIPSEILEL--S 160
           + + K + L+ L +         +     ++ +S L  L L +    G  P  +LE    
Sbjct: 62  TDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121

Query: 161 NLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLL 220
           +L  L+L + S+              + +L                          L +L
Sbjct: 122 DLNILNLRNVSW--------ATRDAWLAELQQWL-------------------KPGLKVL 154

Query: 221 SLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELP----TSIGNLDCLKRLDISWNE-- 274
           S++           +     L  LDLS N  LGE              L+ L +      
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214

Query: 275 -LSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNF-TRLYWLSLASNDFSGELPASFG 332
             SG   A       L+ L+LS N  R        ++ ++L  L+L+      ++P   G
Sbjct: 215 TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK--G 271

Query: 333 NLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGP 374
               L  LD+S  +     PS    L Q+  L    N F   
Sbjct: 272 LPAKLSVLDLSYNRLDR-NPSPDE-LPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.6 bits (196), Expect = 3e-16
 Identities = 49/276 (17%), Positives = 83/276 (30%), Gaps = 20/276 (7%)

Query: 209 HSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRL 268
            SL  L           +    I SL  +L +L        + +      +  +  L+ L
Sbjct: 43  RSLEYLLKRVDTEADLGQFTDIIKSL--SLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 269 DISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHS------MGNFTRLYWLSLASND 322
            +   E++G  P  +      +   L+L      T  +            L  LS+A   
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 323 FSGELPASFGNLRSLEGLDISECKFSSQIPSS----LRNLAQLKFLEFSHNNFSGPIDLD 378
                        +L  LD+S+     +              L+ L   +     P  + 
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 379 MFLV-NFKHLEHLSLSSNRLS-LFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEV 436
             L      L+ L LS N L         +   + N + L    L + P  L  +  L V
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK--LSV 278

Query: 437 LDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIG 472
           LDLS N++            +     L+L  N  + 
Sbjct: 279 LDLSYNRLDRNPSPD----ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.2 bits (195), Expect = 4e-16
 Identities = 50/220 (22%), Positives = 72/220 (32%), Gaps = 9/220 (4%)

Query: 86  HVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFIC-SEIPPEIINLS--RLSYLN 142
            + +L L N  + G             L  L+L    +        E+       L  L+
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155

Query: 143 LSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVT 202
           ++ A        ++     L +LDLS N       L           L  L     G  T
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

Query: 203 ISSPIPHSLANLSSLTLLSLSGCELRGRIPSLL-GNLTKLMYLDLSFNNLLGELPTSIGN 261
            S       A    L  L LS   LR    +      ++L  L+LSF   L ++P  +  
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLPA 274

Query: 262 LDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRG 301
              L  LD+S+N L    P S   L  +  L L  N F  
Sbjct: 275 K--LSVLDLSYNRLD-RNP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 72.6 bits (178), Expect = 8e-14
 Identities = 57/313 (18%), Positives = 94/313 (30%), Gaps = 46/313 (14%)

Query: 518 TGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCG-SIPQ--- 573
            G     +     SLE L    +  + L       F+D +  L L+        IP    
Sbjct: 31  LGAADVELYGGGRSLEYLLKRVDTEADLGQ-----FTDIIKSLSLKRLTVRAARIPSRIL 85

Query: 574 ----TFLSGRSLMMIDLSDNLLQGRIPRSLVNCS--SLKFLDLGNNQISGTFPSWLGTLR 627
                 L    L  + L +  + G  P  L+  +   L  L+L N   +    +WL  L+
Sbjct: 86  FGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQ 144

Query: 628 ELNVLILKSNKLHGMIRE---PNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVN 684
           +     LK   +               FP L  +DLS+N   G+                
Sbjct: 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG-------------- 190

Query: 685 TSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGE 744
                 +   + P    +   L + +  +  +  G   +       L G+ LS N     
Sbjct: 191 ------LISALCPLKFPTLQVLALRNAGME-TPSGVCSALAAARVQLQGLDLSHNSLRDA 243

Query: 745 IPTSI-ANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFL 803
                      L  L+L+   L   +   L     L  LDLS N+     P    +L  +
Sbjct: 244 AGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDR-NPSPD-ELPQV 298

Query: 804 EFFNVSNNNLTGP 816
              ++  N     
Sbjct: 299 GNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.8 bits (142), Expect = 2e-09
 Identities = 53/278 (19%), Positives = 86/278 (30%), Gaps = 36/278 (12%)

Query: 549 CLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLS-DNLLQGRIPRSLVNCSSLKF 607
           C  NFSD         N    +  + +  GRSL  +    D          ++   SLK 
Sbjct: 13  CSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKR 72

Query: 608 LDLGNNQISGTFPSW---LGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNR 664
           L +   +I          +  +  L  L L++ ++ G    P      P+L I++L N  
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 665 FTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSY 724
           +  +                          +  +       L I        +  Q+  +
Sbjct: 133 WATRDAW--------------------LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172

Query: 725 DKVPNFLTGVILSSNRFDGEIPTSIA----NLKGLQVLSLANN---SLHGHILSCLGNLT 777
                 L+ + LS N   GE     A        LQVL+L N    +  G   +      
Sbjct: 173 ----PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228

Query: 778 GLESLDLSNNKFSGQIPQQL-VDLTFLEFFNVSNNNLT 814
            L+ LDLS+N              + L   N+S   L 
Sbjct: 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 6/106 (5%)

Query: 731 LTGVILSSNRFDGEIPTSIANLKG--LQVLSLANNSLHGH--ILSCLGNL--TGLESLDL 784
           L  + L +    G  P  +    G  L +L+L N S       L+ L      GL+ L +
Sbjct: 97  LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156

Query: 785 SNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTS 830
           +         +Q+     L   ++S+N   G     +        +
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPT 202

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 77.4 bits (191), Expect = 1e-15
 Identities = 49/260 (18%), Positives = 94/260 (36%), Gaps = 19/260 (7%)

Query: 188 KKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLS 247
                  +  L   +++  +      L+S+  +  +  +++  +  +   L  +  L L+
Sbjct: 21  DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQGI-QYLPNVTKLFLN 76

Query: 248 FNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSM 307
            N L    P  + NL  L  L +  N++  +L  S+ +L  L+ L L  N         +
Sbjct: 77  GNKLTDIKP--LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGISDING--L 130

Query: 308 GNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFS 367
            +  +L  L L +N  +         L  L+ L + + + S      L  L +L+ L  S
Sbjct: 131 VHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLS 186

Query: 368 HNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNF 427
            N+ S   DL   L   K+L+ L L S           +     N V     +L   P  
Sbjct: 187 KNHIS---DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT-PEI 241

Query: 428 LKNQHYLEVLDLSCNKIHGK 447
           + +    E  ++  +     
Sbjct: 242 ISDDGDYEKPNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 62/344 (18%), Positives = 112/344 (32%), Gaps = 83/344 (24%)

Query: 78  VECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSR 137
           +  ++     IK +L        +  +    +L  ++ +    +         +I ++  
Sbjct: 17  IFSDDAFAETIKDNLKKKS----VTDAVTQNELNSIDQIIANNS---------DIKSVQG 63

Query: 138 LSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELA 197
           + Y                  L N+  L L+ N    L ++K       +  L NL  L 
Sbjct: 64  IQY------------------LPNVTKLFLNGN---KLTDIKP------LANLKNLGWLF 96

Query: 198 LGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPT 257
           L    +       L +L  L  LSL    +   I   L +L +L  L L  N +     T
Sbjct: 97  LDENKVKDLSS--LKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKI--TDIT 150

Query: 258 SIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLS 317
            +  L  L  L +  N++S      I  LA L +L+                      L 
Sbjct: 151 VLSRLTKLDTLSLEDNQIS-----DIVPLAGLTKLQ---------------------NLY 184

Query: 318 LASN---DFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGP 374
           L+ N   D           L++L+ L++   +  ++  +   NL     ++ +  +   P
Sbjct: 185 LSKNHISDLRA-----LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239

Query: 375 --IDLDMFLVNFKHLEHLSLSSNRLSL-FTKAIFNTSQKFNFVG 415
             I  D          HL   +N +S  F + +     K  F G
Sbjct: 240 EIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHG 283

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 66.2 bits (162), Expect = 7e-12
 Identities = 41/213 (19%), Positives = 83/213 (38%), Gaps = 23/213 (10%)

Query: 235 LGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLEL 294
                + +  +L   ++   +      L+ + ++  + +++   +   I  L ++ +L L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFL 75

Query: 295 SLNRFRGKTPHSMGNFTRLYWLSLASN---DFSGELPASFGNLRSLEGLDISECKFSSQI 351
           + N+     P  + N   L WL L  N   D S        +L+ L+ L +     S   
Sbjct: 76  NGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-----LKDLKKLKSLSLEHNGISD-- 126

Query: 352 PSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKF 411
            + L +L QL+ L   +N  +   D+   L     L+ LSL  N++S           K 
Sbjct: 127 INGLVHLPQLESLYLGNNKIT---DIT-VLSRLTKLDTLSLEDNQISDIV--PLAGLTKL 180

Query: 412 NFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKI 444
             + L   ++++    L     L+VL+L   + 
Sbjct: 181 QNLYLSKNHISDLRA-LAGLKNLDVLELFSQEC 212

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 43/309 (13%), Positives = 84/309 (27%), Gaps = 96/309 (31%)

Query: 333 NLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSL 392
                   ++ +   +     +   L  +  +  ++++      +   +    ++  L L
Sbjct: 22  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK---SVQ-GIQYLPNVTKLFL 75

Query: 393 SSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWL 452
           + N+L+                      L    N       L  L L  NK+        
Sbjct: 76  NGNKLTDIK------------------PLANLKN-------LGWLFLDENKVK------- 103

Query: 453 IEPSMQNFSYL-NLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYL 511
               + +   L  L                       L L +N +               
Sbjct: 104 ---DLSSLKDLKKLKS---------------------LSLEHNGI--------------- 124

Query: 512 VSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSI 571
              + + G            LE L L  N ++ +    L   +  L  L L+ N+    I
Sbjct: 125 ---SDING------LVHLPQLESLYLGNNKITDITV--LSRLT-KLDTLSLEDNQIS-DI 171

Query: 572 PQTFLSG-RSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELN 630
               L+G   L  + LS N +     R+L    +L  L+L + +      +    L   N
Sbjct: 172 V--PLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 227

Query: 631 VLILKSNKL 639
            +      L
Sbjct: 228 TVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.1 bits (115), Expect = 6e-06
 Identities = 35/155 (22%), Positives = 66/155 (42%), Gaps = 16/155 (10%)

Query: 512 VSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSI 571
           +   S+T  +     N  NS++ +  + +++  +  Q +     +++ L L  NK     
Sbjct: 31  LKKKSVTDAVTQ---NELNSIDQIIANNSDIKSV--QGIQYLP-NVTKLFLNGNKLTDIK 84

Query: 572 PQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNV 631
           P   L   +L  + L +N ++  +  SL +   LK L L +N IS      L  L +L  
Sbjct: 85  PLANLK--NLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGISDING--LVHLPQLES 138

Query: 632 LILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFT 666
           L L +NK    I +        +L  + L +N+ +
Sbjct: 139 LYLGNNK----ITDITVLSRLTKLDTLSLEDNQIS 169

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 731 LTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFS 790
           L  + L  N         + +L  L+ L L NN +    ++ L  LT L++L L +N+ S
Sbjct: 114 LKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS 169

Query: 791 GQIPQQLVDLTFLEFFNVSNNNLT 814
             +P  L  LT L+   +S N+++
Sbjct: 170 DIVP--LAGLTKLQNLYLSKNHIS 191

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 77.6 bits (191), Expect = 2e-15
 Identities = 48/240 (20%), Positives = 79/240 (32%), Gaps = 11/240 (4%)

Query: 207 IPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSI-GNLDCL 265
           IP  L    +   L     +LR            L  +++S N++L  +   +  NL  L
Sbjct: 24  IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81

Query: 266 KRLDIS-WNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFS 324
             + I   N L    P +  NL +L+ L +S    +        +  +   L +  N   
Sbjct: 82  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI 141

Query: 325 GELPA-SFGNLRS-LEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLV 382
             +   SF  L      L +++      I +S  N  QL  L  S NN    +  D+F  
Sbjct: 142 HTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVF-H 199

Query: 383 NFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCN 442
                  L +S  R+           +K         NL + P   +    L    L+  
Sbjct: 200 GASGPVILDISRTRIHSLPSYGLENLKKLRARSTY--NLKKLPTL-EKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 77.2 bits (190), Expect = 3e-15
 Identities = 53/313 (16%), Positives = 103/313 (32%), Gaps = 30/313 (9%)

Query: 126 SEIPPEIINLSRLSYLNLSSAGFFGQIPSEILE-LSNLVSLDLSHNSYYNLIELKEPNLG 184
           S++P   I L R     L        I         +L  +++S N    +IE       
Sbjct: 26  SDLPRNAIEL-RFVLTKLRV------IQKGAFSGFGDLEKIEISQNDVLEVIEA------ 72

Query: 185 NLVKKLTNLKELALGGVT-ISSPIPHSLANLSSLTLLSLSGCELRGRIPSLL-GNLTKLM 242
           ++   L  L E+ +     +    P +  NL +L  L +S   ++  +P +   +  + +
Sbjct: 73  DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKV 131

Query: 243 YLDLSFNNLLGELPTSI--GNLDCLKRLDISWNELSGELPASIGNLASLEQLELS-LNRF 299
            LD+  N  +  +  +   G       L ++ N +  E+  S  N   L++L LS  N  
Sbjct: 132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNL 190

Query: 300 RGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLA 359
                      +    L ++             NL+ L        K   ++P +L  L 
Sbjct: 191 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLP-TLEKLV 246

Query: 360 QLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSC 419
            L     ++     P     F    + +  L    N+  L  +  + T  +     L   
Sbjct: 247 ALMEASLTY-----PSHCCAFANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAED 301

Query: 420 NLNEFPNFLKNQH 432
           N + +       +
Sbjct: 302 NESSYSRGFDMTY 314

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 65.6 bits (160), Expect = 2e-11
 Identities = 60/370 (16%), Positives = 119/370 (32%), Gaps = 60/370 (16%)

Query: 216 SLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNEL 275
           S  +      ++   IPS L      + L      L      +      L++++IS N++
Sbjct: 10  SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 276 SGELPASI-GNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNL 334
              + A +  NL  L ++ +                  L +++          P +F NL
Sbjct: 67  LEVIEADVFSNLPKLHEIRIE-------------KANNLLYIN----------PEAFQNL 103

Query: 335 RSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSS 394
            +L+ L IS             +  Q   L+   N     I+ + F+        L L+ 
Sbjct: 104 PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163

Query: 395 NRLSLFTKAIFNTSQKFNFVGLRSCNLNEFP-NFLKNQHYLEVLDLSCNKIHGKVPKWLI 453
           N +     + FN +Q        + NL E P +         +LD+S  +IH  +P + +
Sbjct: 164 NGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGL 222

Query: 454 EPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFT----LDLSYNYLQGPLPVPPPQTKH 509
           E +++     +  +   +     P       +         L+Y                
Sbjct: 223 E-NLKKLRARSTYNLKKL-----PTL-----EKLVALMEASLTYPS-------------- 257

Query: 510 YLVSNNSLTGKIPFW--ICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKF 567
           +  +  +   +I     ICN S   + +D              DN S +    D+ + +F
Sbjct: 258 HCCAFANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAEDNESSYSRGFDMTYTEF 317

Query: 568 CGSIPQTFLS 577
              +    + 
Sbjct: 318 DYDLCNEVVD 327

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.0 bits (148), Expect = 6e-10
 Identities = 48/279 (17%), Positives = 83/279 (29%), Gaps = 43/279 (15%)

Query: 513 SNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIP 572
             + +T +IP    +   +   L      L  +       F   L  +++  N     I 
Sbjct: 17  QESKVT-EIP---SDLPRNAIELRFVLTKLRVIQKGAFSGFG-DLEKIEISQNDVLEVIE 71

Query: 573 -QTFLSGRSLMMIDLSD-NLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELN 630
              F +   L  I +   N L    P +  N  +L++L + N  I            +  
Sbjct: 72  ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV 131

Query: 631 VLILKSNKLHGMIREPNTGCGFP-ELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELR 689
           +L ++ N     I E N+  G   E  I+ L+ N    ++ +  F            EL 
Sbjct: 132 LLDIQDNINIHTI-ERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNG------TQLDELN 183

Query: 690 YMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSI 749
             +                   +L          +         + +S  R    +P+  
Sbjct: 184 LSDNN-----------------NLEELPND---VFHGASG-PVILDISRTRIH-SLPSYG 221

Query: 750 -ANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNN 787
             NLK L+  S  N       L  L  L  L    L+  
Sbjct: 222 LENLKKLRARSTYNLK----KLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.2 bits (146), Expect = 1e-09
 Identities = 25/153 (16%), Positives = 42/153 (27%), Gaps = 8/153 (5%)

Query: 513 SNNSLTGKIPFWICNSSNSLEILDLSYNN-LSGLLPQCLDNFSDHLSILDLQHNKFCGSI 571
           SN  +   +P      S    +LD+  N  +  +        S    IL L  N      
Sbjct: 112 SNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170

Query: 572 PQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNV 631
              F   +   +    +N L+          S    LD+   +I       L  L++L  
Sbjct: 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA 230

Query: 632 LILKSNKLHGMIREPNTGCGFPELRIIDLSNNR 664
               + K    +           L    L+   
Sbjct: 231 RSTYNLKKLPTLE------KLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.6 bits (134), Expect = 3e-08
 Identities = 52/297 (17%), Positives = 84/297 (28%), Gaps = 75/297 (25%)

Query: 335 RSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLS- 393
           R+   L     K       +      L+ +E S N+    I+ D+F  N   L  + +  
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF-SNLPKLHEIRIEK 88

Query: 394 SNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLI 453
           +N L       F          L +               L+ L +S   I   +P    
Sbjct: 89  ANNLLYINPEAFQ--------NLPN---------------LQYLLISNTGIK-HLPDVHK 124

Query: 454 EPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVS 513
             S+Q    L++  N  I   +   F   +++   L L+ N +Q                
Sbjct: 125 IHSLQKV-LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ---------------- 167

Query: 514 NNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQ 573
                 +I     N +   E+     NNL  L        S    ILD+   +   S+P 
Sbjct: 168 ------EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS-GPVILDISRTRIH-SLP- 218

Query: 574 TFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELN 630
                                    L N   L+     N +   T    L  L E +
Sbjct: 219 ----------------------SYGLENLKKLRARSTYNLKKLPTLEK-LVALMEAS 252

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.2 bits (133), Expect = 4e-08
 Identities = 25/157 (15%), Positives = 51/157 (32%), Gaps = 6/157 (3%)

Query: 510 YLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCG 569
            +   N+L   I      +  +L+ L +S   +   LP      S    +LD+Q N    
Sbjct: 85  RIEKANNLL-YINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIH 142

Query: 570 SIPQTFLSG--RSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLR 627
           +I +    G     +++ L+ N +Q     +       +     NN +            
Sbjct: 143 TIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS 202

Query: 628 ELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNR 664
              +L +   ++H +           +LR     N +
Sbjct: 203 GPVILDISRTRIHSL--PSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.8 bits (132), Expect = 6e-08
 Identities = 49/314 (15%), Positives = 88/314 (28%), Gaps = 79/314 (25%)

Query: 522 PFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSG-RS 580
              IC+ SN   +     + ++ + P    +   +   L     K    I +   SG   
Sbjct: 3   HHRICHCSN--RVFLCQESKVTEI-PS---DLPRNAIELRFVLTKL-RVIQKGAFSGFGD 55

Query: 581 LMMIDLSDNLLQGRIPRS-LVNCSSLKFLDLGN-NQISGTFPSWLGTLRELNVLILKSNK 638
           L  I++S N +   I      N   L  + +   N +    P     L  L  L++ +  
Sbjct: 56  LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115

Query: 639 LHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPF 698
           +  +           +  ++D+ +N     +    F                        
Sbjct: 116 IKHL--PDVHKIHSLQKVLLDIQDNINIHTIERNSF------------------------ 149

Query: 699 ALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVL 758
                                       +      + L+ N    EI  S  N   L  L
Sbjct: 150 --------------------------VGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDEL 182

Query: 759 SLANN----SLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLT 814
           +L++N     L   +       +G   LD+S  +        L +L  L     S  NL 
Sbjct: 183 NLSDNNNLEELPNDVFH---GASGPVILDISRTRIHSLPSYGLENLKKLRAR--STYNLK 237

Query: 815 GPIPQGNQFPTFDK 828
                  + PT +K
Sbjct: 238 -------KLPTLEK 244

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 42/210 (20%), Positives = 69/210 (32%), Gaps = 30/210 (14%)

Query: 86  HVIKLDLSNSCLQGFINSSSGLFK-LVHLEWLDLAFNYFICSEIPPEI-INLSRLSYLNL 143
            + K+++S + +   I +   +F  L  L  + +     +   I PE   NL  L YL +
Sbjct: 55  DLEKIEISQNDVLEVIEA--DVFSNLPKLHEIRIEKANNL-LYINPEAFQNLPNLQYLLI 111

Query: 144 SSAGFFGQIPSEI-LELSNLVSLDLSHNSYYNLIE----------LKEPNLGN------- 185
           S+ G    +P    +     V LD+  N   + IE               L         
Sbjct: 112 SNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170

Query: 186 -LVKKLTNLKELAL-GGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMY 243
                 T L EL L     +           S   +L +S   +       L NL KL  
Sbjct: 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA 230

Query: 244 LDLSFNNLLGELPTSIGNLDCLKRLDISWN 273
                   L +LP ++  L  L    +++ 
Sbjct: 231 RST---YNLKKLP-TLEKLVALMEASLTYP 256

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 72.8 bits (179), Expect = 4e-14
 Identities = 46/227 (20%), Positives = 87/227 (38%), Gaps = 28/227 (12%)

Query: 154 SEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLAN 213
                L+N V  +L   S  +L+  KE         L+ ++        I S     +  
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQKE---------LSGVQNFNGDNSNIQSLAG--MQF 61

Query: 214 LSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDC--LKRLDIS 271
            ++L  L LS  ++   +   L +LTKL  L ++ N L      ++  +    L RL + 
Sbjct: 62  FTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRL-----KNLNGIPSACLSRLFLD 114

Query: 272 WNELSGELPASIGNLASLEQLE-LSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPAS 330
            NEL         +L  L+ LE LS+   + K+   +G  ++L  L L  N+ +      
Sbjct: 115 NNELR-----DTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGG-- 167

Query: 331 FGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDL 377
              L+ +  +D++  K  ++       L     ++     +  P  +
Sbjct: 168 LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYI 214

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 38/191 (19%), Positives = 77/191 (40%), Gaps = 23/191 (12%)

Query: 211 LANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDC---LKR 267
              L++    +L    +   +      L+ +   +   +N+      S+  +     LK 
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNI-----QSLAGMQFFTNLKE 67

Query: 268 LDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGEL 327
           L +S N++S +L   + +L  LE+L ++ NR +          +RL+   L +N+     
Sbjct: 68  LHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLF---LDNNELRD-- 120

Query: 328 PASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHL 387
             S  +L++LE L I   K  S     L  L++L+ L+   N  +   +    L   K +
Sbjct: 121 TDSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEIT---NTG-GLTRLKKV 174

Query: 388 EHLSLSSNRLS 398
             + L+  +  
Sbjct: 175 NWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 65.8 bits (161), Expect = 7e-12
 Identities = 47/262 (17%), Positives = 84/262 (32%), Gaps = 32/262 (12%)

Query: 78  VECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSR 137
           V  +    + +K +L        +       +L  ++  +   +      +   +   + 
Sbjct: 12  VFPDPGLANAVKQNLGKQ----SVTDLVSQKELSGVQNFNGDNSNI--QSLAG-MQFFTN 64

Query: 138 LSYLNLSSAGFFGQIP--SEILELSNLVSLDLSHNSYYNLIELKEPNLGNL--------- 186
           L  L+LS      QI   S + +L+ L  L ++ N   NL  +    L  L         
Sbjct: 65  LKELHLSH----NQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRD 120

Query: 187 ---VKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMY 243
              +  L NL+ L++    + S +   L  LS L +L L G E+       L  L K+ +
Sbjct: 121 TDSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITN--TGGLTRLKKVNW 176

Query: 244 LDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKT 303
           +DL+    + E       L     +           P  I N  S     +         
Sbjct: 177 IDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS--PYYISNGGSYVDGCVLWELPVYTD 234

Query: 304 PHSMGNFTRLYWLSLASNDFSG 325
             S   F+    +      F G
Sbjct: 235 EVSY-KFSEYINVGETEAIFDG 255

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.7 bits (153), Expect = 8e-11
 Identities = 51/270 (18%), Positives = 89/270 (32%), Gaps = 49/270 (18%)

Query: 101 INSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELS 160
           IN       L +    +L               +++ L                   ELS
Sbjct: 9   INQVFPDPGLANAVKQNLGKQ------------SVTDLVSQK---------------ELS 41

Query: 161 NLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLL 220
            + + +  +++  +L  +         +  TNLKEL L    IS   P  L +L+ L  L
Sbjct: 42  GVQNFNGDNSNIQSLAGM---------QFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90

Query: 221 SLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELP 280
           S++   L+  +  +      L  L L  N L      S+ +L  L+ L I  N+L   + 
Sbjct: 91  SVNRNRLK-NLNGI--PSACLSRLFLDNNEL--RDTDSLIHLKNLEILSIRNNKLK-SIV 144

Query: 281 ASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGL 340
             +G L+ LE L+L  N        +     ++ W+ L       E       L     +
Sbjct: 145 -MLGFLSKLEVLDLHGNEITNTGGLT--RLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201

Query: 341 DISECKFSSQIPSSLRNLAQLKFLEFSHNN 370
              + ++ S  P  + N             
Sbjct: 202 KDPDGRWIS--PYYISNGGSYVDGCVLWEL 229

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 14/137 (10%)

Query: 530 NSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDN 589
            +L+ L LS+N +S L P  L + +  L  L +  N+   ++    +    L  + L +N
Sbjct: 63  TNLKELHLSHNQISDLSP--LKDLT-KLEELSVNRNRLK-NLN--GIPSACLSRLFLDNN 116

Query: 590 LLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTG 649
            L+     SL++  +L+ L + NN++       LG L +L VL L  N+    I      
Sbjct: 117 ELRD--TDSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNE----ITNTGGL 168

Query: 650 CGFPELRIIDLSNNRFT 666
               ++  IDL+  +  
Sbjct: 169 TRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 37/288 (12%), Positives = 70/288 (24%), Gaps = 93/288 (32%)

Query: 353 SSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFN 412
                LA          + +  +           +++ +  ++ +               
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQK----ELSGVQNFNGDNSNIQSLA----------- 57

Query: 413 FVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYL-NLSHNFLI 471
                   +  F N       L+ L LS N+I            +     L  L      
Sbjct: 58  -------GMQFFTN-------LKELHLSHNQIS----------DLSPLKDLTKLE----- 88

Query: 472 GFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNS 531
                            L ++ N L+    +P        + NN L             +
Sbjct: 89  ----------------ELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSL---IHLKN 129

Query: 532 LEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLL 591
           LEIL +  N L  ++   L   S  L +LDL  N+                  +      
Sbjct: 130 LEILSIRNNKLKSIVM--LGFLS-KLEVLDLHGNEIT----------------NTGG--- 167

Query: 592 QGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKL 639
                  L     + ++DL   +       +   L   N +     + 
Sbjct: 168 -------LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 20/136 (14%), Positives = 49/136 (36%), Gaps = 14/136 (10%)

Query: 531 SLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNL 590
           +    +L   +++ L+       S  +   +  ++              +L  + LS N 
Sbjct: 20  NAVKQNLGKQSVTDLVS--QKELS-GVQNFNGDNSNI--QSLAGMQFFTNLKELHLSHNQ 74

Query: 591 LQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGC 650
           +   +   L + + L+ L +  N++          L  L    L +N+    +R+ ++  
Sbjct: 75  IS-DLS-PLKDLTKLEELSVNRNRLKNLNGIPSACLSRLF---LDNNE----LRDTDSLI 125

Query: 651 GFPELRIIDLSNNRFT 666
               L I+ + NN+  
Sbjct: 126 HLKNLEILSIRNNKLK 141

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.9 bits (174), Expect = 2e-13
 Identities = 54/181 (29%), Positives = 79/181 (43%), Gaps = 8/181 (4%)

Query: 191 TNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNN 250
            +   L L    + +    +L   + LT L+L   EL  ++  + G L  L  LDLS +N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLS-HN 87

Query: 251 LLGELPTSIGNLDCLKRLDISWNELSGELPASI-GNLASLEQLELSLNRFRGKTPHSMGN 309
            L  LP     L  L  LD+S+N L+  LP      L  L++L L  N  +   P  +  
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 310 FTRLYWLSLASNDFSGELPAS-FGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSH 368
             +L  LSLA+N+ + ELPA     L +L+ L + E    + IP        L F     
Sbjct: 147 TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHG 204

Query: 369 N 369
           N
Sbjct: 205 N 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 46/208 (22%), Positives = 73/208 (35%), Gaps = 12/208 (5%)

Query: 237 NLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSL 296
            +   + ++      L  LP  +        L +S N L     A++     L QL L  
Sbjct: 8   KVASHLEVNCD-KRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 297 NRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLR 356
                      G    L  L L+ N     LP     L +L  LD+S  + +S    +LR
Sbjct: 65  AELT--KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 357 NLAQLKFLEFSHNNFSGPIDLDMF--LVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFV 414
            L +L+ L    N     +   +         LE LSL++N L+     + N  +  + +
Sbjct: 122 GLGELQELYLKGNELKT-LPPGLLTPTPK---LEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 415 GLRSCNLNEFPNFLKNQHYLEVLDLSCN 442
            L+  +L   P      H L    L  N
Sbjct: 178 LLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.5 bits (147), Expect = 6e-10
 Identities = 47/186 (25%), Positives = 64/186 (34%), Gaps = 16/186 (8%)

Query: 89  KLDLSNSCLQGFINSSSGLF-KLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAG 147
            L LS + L  F   S         L  L+L       +++  +   L  L  L+LS   
Sbjct: 35  ILHLSENLLYTF---SLATLMPYTRLTQLNLDRAEL--TKLQVDG-TLPVLGTLDLSHNQ 88

Query: 148 FFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPI 207
               +P     L  L  LD+S N    L  L        ++ L  L+EL L G  + +  
Sbjct: 89  L-QSLPLLGQTLPALTVLDVSFN---RLTSLPL----GALRGLGELQELYLKGNELKTLP 140

Query: 208 PHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKR 267
           P  L     L  LSL+   L      LL  L  L  L L   N L  +P        L  
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ-ENSLYTIPKGFFGSHLLPF 199

Query: 268 LDISWN 273
             +  N
Sbjct: 200 AFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.1 bits (146), Expect = 8e-10
 Identities = 41/186 (22%), Positives = 62/186 (33%), Gaps = 21/186 (11%)

Query: 488 TLDLSYNYLQGPLPVP---PPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSG 544
            ++     L     +P   P  T    +S N L              L  L+L    L+ 
Sbjct: 14  EVNCDKRNLTA---LPPDLPKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTK 69

Query: 545 LLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSS 604
           L     D     L  LDL HN+   S+P    +  +L ++D+S N L      +L     
Sbjct: 70  LQV---DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125

Query: 605 LKFLDLGNNQIS----GTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDL 660
           L+ L L  N++     G          +L  L L +N L  +        G   L  + L
Sbjct: 126 LQELYLKGNELKTLPPGLLTP----TPKLEKLSLANNNLTEL--PAGLLNGLENLDTLLL 179

Query: 661 SNNRFT 666
             N   
Sbjct: 180 QENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.0 bits (130), Expect = 8e-08
 Identities = 55/266 (20%), Positives = 84/266 (31%), Gaps = 63/266 (23%)

Query: 547 PQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLK 606
           P C  +       ++        ++P          ++ LS+NLL      +L+  + L 
Sbjct: 2   PICEVSKVASHLEVNCDKRNL-TALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 607 FLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFT 666
            L+L   ++  T     GTL  L  L L  N+L  +   P  G   P L ++D+S NR T
Sbjct: 59  QLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLT 113

Query: 667 GKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDK 726
             LP                                                        
Sbjct: 114 -SLPLGAL--------------------------------------------------RG 122

Query: 727 VPNFLTGVILSSNRFDGEIPTSI-ANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLS 785
           +   L  + L  N     +P  +      L+ LSLANN+L       L  L  L++L L 
Sbjct: 123 LGE-LQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 786 NNKFSGQIPQQLVDLTFLEFFNVSNN 811
            N     IP+       L F  +  N
Sbjct: 181 ENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.3 bits (123), Expect = 5e-07
 Identities = 34/149 (22%), Positives = 53/149 (35%), Gaps = 10/149 (6%)

Query: 526 CNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMID 585
            +   S   ++    NL+  LP    +     +IL L  N        T +    L  ++
Sbjct: 6   VSKVASHLEVNCDKRNLTA-LPP---DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 586 LSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIRE 645
           L    L  ++         L  LDL +NQ+  + P    TL  L VL +  N+L  +   
Sbjct: 62  LDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL--P 116

Query: 646 PNTGCGFPELRIIDLSNNRFTGKLPSKYF 674
                G  EL+ + L  N     LP    
Sbjct: 117 LGALRGLGELQELYLKGNELK-TLPPGLL 144

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 26/93 (27%), Positives = 35/93 (37%), Gaps = 8/93 (8%)

Query: 736 LSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQ 795
           LS N        ++     L  L+L    L    L   G L  L +LDLS+N+    +P 
Sbjct: 38  LSENLLYTFSLATLMPYTRLTQLNLDRAELT--KLQVDGTLPVLGTLDLSHNQLQ-SLPL 94

Query: 796 QLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDK 828
               L  L   +VS N LT  +P G        
Sbjct: 95  LGQTLPALTVLDVSFNRLTS-LPLG----ALRG 122

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 8/99 (8%)

Query: 731 LTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFS 790
           L  + LS N+    +P     L  L VL ++ N L    L  L  L  L+ L L  N+  
Sbjct: 79  LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137

Query: 791 GQIPQQLVD-LTFLEFFNVSNNNLTGPIPQGNQFPTFDK 828
             +P  L+     LE  +++NNNLT  +P G      + 
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNNLTE-LPAG----LLNG 170

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.5 bits (168), Expect = 7e-13
 Identities = 40/236 (16%), Positives = 77/236 (32%), Gaps = 33/236 (13%)

Query: 215 SSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNE 274
                  ++  +++ RIPSL  +      L L   +L      +  NL  + R+ +S + 
Sbjct: 11  HQEEDFRVTCKDIQ-RIPSLPPSTQ---TLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 275 LSGELPASI-GNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGN 333
              +L +    NL+ +  +E+   R          N T +              P +   
Sbjct: 67  TLQQLESHSFYNLSKVTHIEIRNTR----------NLTYID-------------PDALKE 103

Query: 334 LRSLEGLDISECKFSSQIP--SSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLS 391
           L  L+ L I         P  + + +      LE + N +   I ++ F         L 
Sbjct: 104 LPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK 162

Query: 392 LSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPN--FLKNQHYLEVLDLSCNKIH 445
           L +N  +      FN ++       ++  L       F        +LD+S   + 
Sbjct: 163 LYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 35/220 (15%), Positives = 76/220 (34%), Gaps = 28/220 (12%)

Query: 190 LTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPS-LLGNLTKLMYLDLSF 248
             + + L L    + +   H+ +NL +++ + +S      ++ S    NL+K+ ++++  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 249 NNLLGELPTSI-GNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSM 307
              L  +       L  LK L I    L         +L  +   ++             
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLK-----MFPDLTKVYSTDI------------- 131

Query: 308 GNFTRLYWLSLASNDFSGELPA-SFGNLRS-LEGLDISECKFSSQIPSSLRNLAQLKFLE 365
                 + L +  N +   +P  +F  L +    L +    F+S +     N  +L  + 
Sbjct: 132 -----FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVY 185

Query: 366 FSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIF 405
            + N +   ID D F   +     L +S   ++       
Sbjct: 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGL 225

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.4 bits (160), Expect = 6e-12
 Identities = 42/239 (17%), Positives = 82/239 (34%), Gaps = 29/239 (12%)

Query: 71  DCCLWDGVECNENTGHVI--------KLDLSNSCLQGFINSSSGLFK-LVHLEWLDLAFN 121
           +C   +           I         L L  + L+      S  F  L ++  + ++ +
Sbjct: 9   ECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTI---PSHAFSNLPNISRIYVSID 65

Query: 122 YFICSEIPPEI-INLSRLSYLNLSSAGFFGQIPSEILE-LSNLVSLDLSHNSYYNLIELK 179
             +  ++      NLS+++++ + +      I  + L+ L  L  L + +     L    
Sbjct: 66  VTL-QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT---GLKMFP 121

Query: 180 EPNLGNLVKKLTNLKELALGGVTISSPIP-HSLANLSSLTL-LSLSGCELRGRIPSLLGN 237
           +      V        L +      + IP ++   L + TL L L        +     N
Sbjct: 122 D---LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFN 177

Query: 238 LTKLMYLDLSFNNLLGELPTSI--GNLDCLKRLDISWNELSGELPASIGNLASLEQLEL 294
            TKL  + L+ N  L  +      G       LD+S   ++  LP+    L  L++L  
Sbjct: 178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKG--LEHLKELIA 233

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.4 bits (160), Expect = 7e-12
 Identities = 53/253 (20%), Positives = 89/253 (35%), Gaps = 51/253 (20%)

Query: 128 IPPEIINLSRLSYLNLSSAGFFGQIPSEILE-LSNLVSLDLSHNSYYNLIELKEPNLGNL 186
           +PP    L +L   +L +      IPS     L N+  + +S +                
Sbjct: 29  LPPSTQTL-KLIETHLRT------IPSHAFSNLPNISRIYVSIDV--------------- 66

Query: 187 VKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPS-LLGNLTKLMYLD 245
              L  L+              HS  NLS +T + +        I    L  L  L +L 
Sbjct: 67  --TLQQLE-------------SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111

Query: 246 LSFNNLLGELP--TSIGNLDCLKRLDISWNELSGELPA-SIGNLAS-LEQLELSLNRFRG 301
           +  N  L   P  T + + D    L+I+ N     +P  +   L +    L+L  N F  
Sbjct: 112 IF-NTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT- 169

Query: 302 KTPHSMGNFTRLYWLSLASNDFSGELPA-SFGNLRS-LEGLDISECKFSSQIPSSLRNLA 359
                  N T+L  + L  N +   +   +FG + S    LD+S+   ++     L +L 
Sbjct: 170 SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLK 229

Query: 360 QLKFLEFSHNNFS 372
           +L       N ++
Sbjct: 230 ELIAR----NTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 35/227 (15%), Positives = 65/227 (28%), Gaps = 37/227 (16%)

Query: 334 LRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLS 393
             S + L + E    +    +  NL  +  +  S +     ++   F  N   + H+ + 
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF-YNLSKVTHIEIR 88

Query: 394 SNRL--SLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKW 451
           + R    +   A            L                 L+ L +    +    P  
Sbjct: 89  NTRNLTYIDPDA---------LKELPL---------------LKFLGIFNTGLK-MFPDL 123

Query: 452 LIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPP------P 505
               S   F  L ++ N  +       F     +  TL L  N       V         
Sbjct: 124 TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS---VQGYAFNGTK 180

Query: 506 QTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDN 552
               YL  N  LT           +   +LD+S  +++ L  + L++
Sbjct: 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEH 227

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 31/172 (18%), Positives = 66/172 (38%), Gaps = 12/172 (6%)

Query: 510 YLVSNNSLTGKIPFWICNSSNSLEILDLSYNN-LSGLLPQCLDNFSDHLSILDLQHNKFC 568
           Y+  + +L  ++      + + +  +++     L+ + P  L      L  L + +    
Sbjct: 61  YVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP-LLKFLGIFNTGL- 117

Query: 569 GSIPQT--FLSGRSLMMIDLSDNLLQGRIPRSLVN--CSSLKFLDLGNNQISGTFPSWLG 624
              P      S     +++++DN     IP +     C+    L L NN  + +   +  
Sbjct: 118 KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAF 176

Query: 625 TLRELNVLILKSNKLHGMIREPNTGCGFPE-LRIIDLSNNRFTGKLPSKYFQ 675
              +L+ + L  NK   +I + +   G      ++D+S    T  LPSK  +
Sbjct: 177 NGTKLDAVYLNKNKYLTVI-DKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLE 226

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 41/310 (13%), Positives = 86/310 (27%), Gaps = 91/310 (29%)

Query: 506 QTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHN 565
           Q + + V+   +  +IP    +   S + L L   +L  +      N   ++S + +  +
Sbjct: 12  QEEDFRVTCKDIQ-RIP----SLPPSTQTLKLIETHLRTIPSHAFSNLP-NISRIYVSID 65

Query: 566 KFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQ-ISGTFPSWLG 624
                +                          S  N S +  +++ N + ++   P  L 
Sbjct: 66  VTLQQLE-----------------------SHSFYNLSKVTHIEIRNTRNLTYIDPDALK 102

Query: 625 TLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVN 684
            L  L  L + +  L  M  +           I+++++N +   +P   FQ         
Sbjct: 103 ELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQ--------- 152

Query: 685 TSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGE 744
                                                     + N    + L +N F   
Sbjct: 153 -----------------------------------------GLCNETLTLKLYNNGF-TS 170

Query: 745 IPTSIANLKGLQVLSLANN----SLHGHILSCLGNLTGLESLDLSNNKFS---GQIPQQL 797
           +     N   L  + L  N     +        G  +G   LD+S    +    +  + L
Sbjct: 171 VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFG--GVYSGPSLLDVSQTSVTALPSKGLEHL 228

Query: 798 VDLTFLEFFN 807
            +L     + 
Sbjct: 229 KELIARNTWT 238

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.9 bits (171), Expect = 9e-13
 Identities = 45/188 (23%), Positives = 73/188 (38%), Gaps = 16/188 (8%)

Query: 488 TLDLSYNYLQGPLPVP---PPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSG 544
            L  S   L     VP   P  T    +S+N+L+     W      +L  L LS+N+L+ 
Sbjct: 22  ILSCSKQQLPN---VPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF 78

Query: 545 LLPQCLDNFSDHLSILDLQHNKFCGSIP-QTFLSGRSLMMIDLSDNLLQGRIPR-SLVNC 602
           +  +       +L  LDL  N    ++    F   ++L ++ L +N +   + R +  + 
Sbjct: 79  ISSEAFVPVP-NLRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDM 135

Query: 603 SSLKFLDLGNNQIS----GTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRII 658
           + L+ L L  NQIS             L +L +L L SNKL  +               +
Sbjct: 136 AQLQKLYLSQNQISRFPVELIKDG-NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

Query: 659 DLSNNRFT 666
            L NN   
Sbjct: 195 YLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 67.6 bits (165), Expect = 5e-12
 Identities = 48/168 (28%), Positives = 65/168 (38%), Gaps = 18/168 (10%)

Query: 111 VHLEWLDLAFNYFICSEIPPEII--NLSRLSYLNLSSAGFFGQIPSEILE-LSNLVSLDL 167
            +   LDL+ N    S +  E     L+ L  L LS       I SE    + NL  LDL
Sbjct: 39  SYTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDL 95

Query: 168 SHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCEL 227
           S N   +L  L E     L   L  L+ L L    I     ++  +++ L  L LS  ++
Sbjct: 96  SSN---HLHTLDE----FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148

Query: 228 RGRIP----SLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDIS 271
             R P         L KLM LDLS N L     T +  L    +  + 
Sbjct: 149 S-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.8 bits (163), Expect = 8e-12
 Identities = 37/160 (23%), Positives = 61/160 (38%), Gaps = 10/160 (6%)

Query: 191 TNLKELALGGVTISSPIPH-SLANLSSLTLLSLSGCELRGRIPS-LLGNLTKLMYLDLSF 248
           +    L L    +S      +   L++L  L LS   L   I S     +  L YLDLS 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS- 96

Query: 249 NNLLGELPTSI-GNLDCLKRLDISWNELSGELPASI-GNLASLEQLELSLNR---FRGKT 303
           +N L  L   +  +L  L+ L +  N +   +  +   ++A L++L LS N+   F  + 
Sbjct: 97  SNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155

Query: 304 PHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDIS 343
                   +L  L L+SN            L +     + 
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 9/159 (5%)

Query: 316 LSLASNDFSGELPA--SFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSG 373
           L L+ N+ S  L A  +   L +L  L +S    +     +   +  L++L+ S N+   
Sbjct: 44  LDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102

Query: 374 PIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPN----FLK 429
            +D  +F  + + LE L L +N + +  +  F    +   + L    ++ FP        
Sbjct: 103 -LDEFLF-SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN 160

Query: 430 NQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHN 468
               L +LDLS NK+       L +      + L L +N
Sbjct: 161 KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 46/231 (19%), Positives = 70/231 (30%), Gaps = 72/231 (31%)

Query: 600 VNCSSLKF-------------LDLGNNQISGTFPSW-LGTLRELNVLILKSNKLHGMIRE 645
           ++CS  +              LDL +N +S     W    L  L+ L+L  N L+ +   
Sbjct: 23  LSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI--S 80

Query: 646 PNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAA 705
                  P LR +DLS+N     L    F         +   L                 
Sbjct: 81  SEAFVPVPNLRYLDLSSNHLH-TLDEFLFS--------DLQALEV--------------- 116

Query: 706 LGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANN-- 763
                  L + N           N +   ++  N F+         +  LQ L L+ N  
Sbjct: 117 -------LLLYN-----------NHIV--VVDRNAFED--------MAQLQKLYLSQNQI 148

Query: 764 -SLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVS-NNN 812
                 ++     L  L  LDLS+NK        L  L       +  +NN
Sbjct: 149 SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 46/259 (17%), Positives = 74/259 (28%), Gaps = 67/259 (25%)

Query: 434 LEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFT----L 489
             +LDLS N +     +W     + N   L LSHN L   +     F            L
Sbjct: 41  TALLDLSHNNLSRLRAEWTPT-RLTNLHSLLLSHNHLN--FISSEAF----VPVPNLRYL 93

Query: 490 DLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQC 549
           DLS N+L              L                   +LE+L L  N++  +    
Sbjct: 94  DLSSNHLH----TLDEFLFSDLQ------------------ALEVLLLYNNHIVVVDRNA 131

Query: 550 LDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLD 609
            ++ +  L  L L  N+      +    G  L                       L  LD
Sbjct: 132 FEDMA-QLQKLYLSQNQISRFPVELIKDGNKL---------------------PKLMLLD 169

Query: 610 LGNNQISGTFPSWLGTLREL--NVLILKSNKLH----------GMIREPNTGCGFPELRI 657
           L +N++     + L  L     N L L +N L                  +     +  +
Sbjct: 170 LSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDL 229

Query: 658 IDLSNNRFTGKLPSKYFQC 676
             + + +        +F C
Sbjct: 230 YCMHSKKLHNIFSLDFFNC 248

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 8/88 (9%)

Query: 731 LTGVILSSNRFDGEIPTSI-ANLKGLQVLSLANN---SLHGHILSCLGNLTGLESLDLSN 786
           L  ++LS N  +  I +     +  L+ L L++N   +L   + S   +L  LE L L N
Sbjct: 66  LHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFS---DLQALEVLLLYN 121

Query: 787 NKFSGQIPQQLVDLTFLEFFNVSNNNLT 814
           N           D+  L+   +S N ++
Sbjct: 122 NHIVVVDRNAFEDMAQLQKLYLSQNQIS 149

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 14/107 (13%)

Query: 727 VPNFLTGVILSSNRFDGEIPTSIA--NLKGLQVLSLANN---SLHGHILSCLGNLTGLES 781
           +P++   + LS N     +        L  L  L L++N    +          +  L  
Sbjct: 37  LPSYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV---PVPNLRY 92

Query: 782 LDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDK 828
           LDLS+N           DL  LE   + NN++   + +      F+ 
Sbjct: 93  LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRN----AFED 134

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 70.2 bits (171), Expect = 2e-12
 Identities = 55/312 (17%), Positives = 101/312 (32%), Gaps = 25/312 (8%)

Query: 26  CHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCLWDGVECNENTG 85
            H       +  +E+   +  +    +                +++   W   +      
Sbjct: 241 PHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVE---WRTPDGRNRPS 297

Query: 86  HVIKLDLSNSCLQGFINSSSGLFKLVHLE-WLDLAFNYFICSEIPPEIINLSRLSYLNLS 144
           HV   DL  + L   +   +        +   +             +     +L    LS
Sbjct: 298 HVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELS 357

Query: 145 SAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNL------VKKLTNLKEL-- 196
                  + SE+     L  L+  +      I L    L  L      ++  + LK +  
Sbjct: 358 VE-KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 416

Query: 197 --ALGGVTISSP----IPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNN 250
             A     + S             + + +L L+  +L   +  L   L  + +LDLS +N
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCHL-EQLLLVTHLDLS-HN 473

Query: 251 LLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRG-KTPHSMGN 309
            L  LP ++  L CL+ L  S N L   +   + NL  L++L L  NR +       + +
Sbjct: 474 RLRALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVS 531

Query: 310 FTRLYWLSLASN 321
             RL  L+L  N
Sbjct: 532 CPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 65.5 bits (159), Expect = 4e-11
 Identities = 41/234 (17%), Positives = 73/234 (31%), Gaps = 10/234 (4%)

Query: 165 LDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSG 224
                     L++ +             L    L  V  S+ +   L +   L  L    
Sbjct: 323 TGSDSQKECVLLKDRPECWCRDSATDEQLFRCELS-VEKSTVLQSELESCKELQELEPEN 381

Query: 225 CELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIG 284
                 I  L+  L  L+Y   +         +++  +D ++   +        L  S+ 
Sbjct: 382 KWCLLTIILLMRALDPLLYEKETLQYF-----STLKAVDPMRAAYLDDLRSKFLLENSVL 436

Query: 285 NLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISE 344
            +   +   L L          +     +  L L+ N     LP +   LR LE L  S+
Sbjct: 437 KMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASD 495

Query: 345 CKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLS 398
               +     + NL +L+ L   +N       +   LV+   L  L+L  N L 
Sbjct: 496 NALEN--VDGVANLPRLQELLLCNNRLQQSAAIQ-PLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.9 bits (147), Expect = 1e-09
 Identities = 41/289 (14%), Positives = 82/289 (28%), Gaps = 39/289 (13%)

Query: 379 MFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLD 438
              V    L   SL+        + I+  S       L       +         L   +
Sbjct: 296 PSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCE 355

Query: 439 LSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFT-LDLSYNYLQ 497
           LS  K        +++  +++   L              +   R  D       +  Y  
Sbjct: 356 LSVEKS------TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS 409

Query: 498 GPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHL 557
               V P +  +     +    +        ++   +L L++ +L+              
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADV-RVLHLAHKDLT-------------- 454

Query: 558 SILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISG 617
            +  L+                 +  +DLS N L+  +P +L     L+ L   +N +  
Sbjct: 455 VLCHLEQLLL-------------VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE- 499

Query: 618 TFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFT 666
                +  L  L  L+L +N+L             P L +++L  N   
Sbjct: 500 NVDG-VANLPRLQELLLCNNRLQQ-SAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.0 bits (142), Expect = 4e-09
 Identities = 60/356 (16%), Positives = 113/356 (31%), Gaps = 49/356 (13%)

Query: 467 HNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWIC 526
           H +L+G  +        +   + + +   +    P+        L+           W  
Sbjct: 232 HRWLLGRAEPHDVLCCVH--VSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRT 289

Query: 527 NSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFC-------GSIPQTFLSGR 579
               +        +  +  L   L   +  +        K C           +   +  
Sbjct: 290 PDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDE 349

Query: 580 SLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKL 639
            L   +LS       +   L +C  L+ L+  N                L  +IL    L
Sbjct: 350 QLFRCELSVEKST-VLQSELESCKELQELEPENKW-------------CLLTIILLMRAL 395

Query: 640 HGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFA 699
             ++ E  T   F  L+ +D     +   L SK+    + +++                 
Sbjct: 396 DPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRV---------- 445

Query: 700 LVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLS 759
                 L +    LT+    + +        +T + LS NR    +P ++A L+ L+VL 
Sbjct: 446 ------LHLAHKDLTVLCHLEQLL------LVTHLDLSHNRLR-ALPPALAALRCLEVLQ 492

Query: 760 LANNSLHGHILSCLGNLTGLESLDLSNNKFSG-QIPQQLVDLTFLEFFNVSNNNLT 814
            ++N+L    +  + NL  L+ L L NN+       Q LV    L   N+  N+L 
Sbjct: 493 ASDNAL--ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 54/276 (19%), Positives = 89/276 (32%), Gaps = 57/276 (20%)

Query: 513 SNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIP 572
              +   KIP  +     S + LDLS+N L  L      +F   L +LDL   +   +I 
Sbjct: 15  MELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEI-QTIE 68

Query: 573 -QTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNV 631
              + S   L  + L+ N +Q     +    SSL+ L      ++      +G L+ L  
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 632 LILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYM 691
           L +  N +    + P        L  +DLS+N+    +     +  + M ++N S     
Sbjct: 129 LNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLS----- 181

Query: 692 EGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIAN 751
                                                     + LS N  +  I      
Sbjct: 182 ------------------------------------------LDLSLNPMN-FIQPGAFK 198

Query: 752 LKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNN 787
              L+ L+L  N L          LT L+ + L  N
Sbjct: 199 EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 54/227 (23%), Positives = 88/227 (38%), Gaps = 27/227 (11%)

Query: 126 SEIPPEIINLSRLSYLNLSS--AGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNL 183
             +P    NL  LS+  L    +  F            L  LDLS      +  +++   
Sbjct: 24  DNLPFSTKNL-DLSFNPLRHLGSYSFFS-------FPELQVLDLSRC---EIQTIED--- 69

Query: 184 GNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPS-LLGNLTKLM 242
               + L++L  L L G  I S    + + LSSL  L      L   + +  +G+L  L 
Sbjct: 70  -GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLK 127

Query: 243 YLDLSFNNLLG-ELPTSIGNLDCLKRLDISWNELSGELPASI-GNLASLE----QLELSL 296
            L+++ N +   +LP    NL  L+ LD+S N++   +  +    L  +      L+LSL
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 297 NRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDIS 343
           N              RL  L+L +N         F  L SL+ + + 
Sbjct: 187 NPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 55/239 (23%), Positives = 89/239 (37%), Gaps = 38/239 (15%)

Query: 89  KLDLSNSCLQGFINSSSGLF-KLVHLEWLDLAFNYFICSEIPPEI-INLSRLSYLNLSSA 146
            LDLS + L+   +  S  F     L+ LDL+        I      +LS LS L L+  
Sbjct: 32  NLDLSFNPLR---HLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGN 86

Query: 147 GFFGQIPSEILE-LSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISS 205
                +       LS+L  L        NL  L+       +  L  LKEL +    I S
Sbjct: 87  PI-QSLALGAFSGLSSLQKLVAVET---NLASLEN----FPIGHLKTLKELNVAHNLIQS 138

Query: 206 -PIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDC 264
             +P   +NL++L  L LS  +++    + L  L ++  L+L                  
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL------------------ 180

Query: 265 LKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDF 323
              LD+S N ++  +         L++L L  N+ +          T L  + L +N +
Sbjct: 181 --SLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 48/244 (19%), Positives = 75/244 (30%), Gaps = 67/244 (27%)

Query: 585 DLSDNLLQGRIPRSLVNCSSLKFLDLGNNQIS----GTFPSWLGTLRELNVLILKSNKLH 640
           DLS N L+     S  +   L+ LDL   +I     G + S    L  L+ LIL  N + 
Sbjct: 34  DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS----LSHLSTLILTGNPIQ 89

Query: 641 GMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFAL 700
            +        G   L+ +          L +            +   L+           
Sbjct: 90  SL--ALGAFSGLSSLQKLVAVETNLA-SLENFPIG--------HLKTLKE---------- 128

Query: 701 VSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSL 760
                       L +++           N +         F         NL  L+ L L
Sbjct: 129 ------------LNVAH-----------NLIQ-SFKLPEYFS--------NLTNLEHLDL 156

Query: 761 ANN---SLHGHILSCLGNLTGLE-SLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGP 816
           ++N   S++   L  L  +  L  SLDLS N  +  I         L+   +  N L   
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKS- 214

Query: 817 IPQG 820
           +P G
Sbjct: 215 VPDG 218

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 44/260 (16%), Positives = 77/260 (29%), Gaps = 56/260 (21%)

Query: 310 FTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHN 369
                 L L+ N        SF +   L+ LD+S C+  +    + ++L+ L  L  + N
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 370 NFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLK 429
                + L  F      L+ L      L+                 L++           
Sbjct: 87  PIQS-LALGAF-SGLSSLQKLVAVETNLASLENFPIG--------HLKT----------- 125

Query: 430 NQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPR----NYD 485
               L+ L+++ N I           ++ N  +L+LS N +     +             
Sbjct: 126 ----LKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ--SIYCTDLRVLHQMPLL 178

Query: 486 GFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGL 545
             +LDLS N +        P     +                    L+ L L  N L  +
Sbjct: 179 NLSLDLSLNPMN----FIQPGAFKEI-------------------RLKELALDTNQLKSV 215

Query: 546 LPQCLDNFSDHLSILDLQHN 565
                D  +  L  + L  N
Sbjct: 216 PDGIFDRLT-SLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 46/219 (21%), Positives = 77/219 (35%), Gaps = 29/219 (13%)

Query: 434 LEVLDLSCNKIHGKVPKWLIEP----SMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTL 489
            + LDLS N +        +      S      L+LS   +         +       TL
Sbjct: 30  TKNLDLSFNPLRH------LGSYSFFSFPELQVLDLSRCEIQTI--EDGAYQSLSHLSTL 81

Query: 490 DLSYNYLQGPLPV----PPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGL 545
            L+ N +Q  L +         +  +    +L   +  +      +L+ L++++N +   
Sbjct: 82  ILTGNPIQS-LALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 546 LPQCLDNFSD--HLSILDLQHNKFCGSIPQTFLSG-----RSLMMIDLSDNLLQGRIPRS 598
             +  + FS+  +L  LDL  NK   SI  T L          + +DLS N +   I   
Sbjct: 140 --KLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPG 195

Query: 599 LVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSN 637
                 LK L L  NQ+          L  L  + L +N
Sbjct: 196 AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 67.8 bits (166), Expect = 4e-12
 Identities = 61/350 (17%), Positives = 118/350 (33%), Gaps = 73/350 (20%)

Query: 159 LSN--LVSLDLSHNSYYNLIELKE-PNLGNLVKKLTNLKELALGGVTIS----SPIPHSL 211
           ++   +    L  ++    I  ++  ++  ++ +  ++KE+ L G TI       +  ++
Sbjct: 1   MARFSIEGKSLKLDA----ITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENI 56

Query: 212 ANLSSLTLLSLSGCELRGRIPSL-----------LGNLTKLMYLDLSFNNLLGE----LP 256
           A+   L +   S     GR+              L    KL  + LS N         L 
Sbjct: 57  ASKKDLEIAEFSDIFT-GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI 115

Query: 257 TSIGNLDCLKRLDISWNELSGELPASIGNLAS-LEQLELSLNRFRGKTPHSMGNFTRLYW 315
             +     L+ L +  N L    P +   +A  L++L ++             N   L  
Sbjct: 116 DFLSKHTPLEHLYLHNNGLG---PQAGAKIARALQELAVNKK---------AKNAPPLRS 163

Query: 316 LSLASNDFSGE----LPASFGNLRSLEGLDISECKFSSQ-----IPSSLRNLAQLKFLEF 366
           +    N            +F + R L  + + +     +     +   L    +LK L+ 
Sbjct: 164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDL 223

Query: 367 SHNNFS--GPIDLDMFLVNFKHLEHLSLSSNRLSLF-TKAIFNTSQKFNFVGLRSCNLNE 423
             N F+  G   L + L ++ +L  L L+   LS     A+ +                 
Sbjct: 224 QDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD--------AFSKL---- 271

Query: 424 FPNFLKNQHYLEVLDLSCNKIHGKVPKWL---IEPSMQNFSYLNLSHNFL 470
                +N   L+ L L  N+I     + L   I+  M +  +L L+ N  
Sbjct: 272 -----ENIG-LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.7 bits (158), Expect = 4e-11
 Identities = 48/332 (14%), Positives = 92/332 (27%), Gaps = 67/332 (20%)

Query: 113 LEWLDLAFNYF---ICSEIPPEIINLSRLSYLNLSSAGF----FGQIPSEILELSNLVSL 165
           +E   L  +         +   ++    +  + LS           +   I    +L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 166 DLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGC 225
           + S      + +     L  L++                     +L     L  + LS  
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQ---------------------ALLKCPKLHTVRLSDN 104

Query: 226 ELRGR----IPSLLGNLTKLMYLDLSFNNL-------LGE------LPTSIGNLDCLKRL 268
                    +   L   T L +L L  N L       +        +     N   L+ +
Sbjct: 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI 164

Query: 269 DISWNELSGE----LPASIGNLASLEQLELSLNRFRGKT-----PHSMGNFTRLYWLSLA 319
               N L          +  +   L  +++  N  R +         +     L  L L 
Sbjct: 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQ 224

Query: 320 SNDFSGE----LPASFGNLRSLEGLDISECKFSSQ----IPSSLRNLA--QLKFLEFSHN 369
            N F+      L  +  +  +L  L +++C  S++    +  +   L    L+ L   +N
Sbjct: 225 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 284

Query: 370 NFS--GPIDL-DMFLVNFKHLEHLSLSSNRLS 398
                    L  +       L  L L+ NR S
Sbjct: 285 EIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 64/358 (17%), Positives = 104/358 (29%), Gaps = 71/358 (19%)

Query: 335 RSLEGLDISECKFSSQ----IPSSLRNLAQLKFLEFSHNNFS--GPIDLDMFLVNFKHLE 388
            S+EG  +     +++    + + L     +K +  S N         L   + + K LE
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 389 HLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKV 448
               S          I                L      L     L  + LS N      
Sbjct: 64  IAEFSDIFTGRVKDEIPE-------------ALRLLLQALLKCPKLHTVRLSDNAFGPTA 110

Query: 449 PKWLIE--PSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQ 506
            + LI+         +L L +N  +G        P+        L    +       PP 
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNN-GLG--------PQAGAKIARALQELAVNKKAKNAPPL 161

Query: 507 TKHYLVSNNSLTGKIPFWICN---SSNSLEILDLSYNNL-----SGLLPQCLDNFSDHLS 558
                   N L             S   L  + +  N +       LL + L      L 
Sbjct: 162 RSIIC-GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY-CQELK 219

Query: 559 ILDLQHNKF----CGSIPQTFLSGRSLMMIDLSDNLLQGR----IPRSLVNCS--SLKFL 608
           +LDLQ N F      ++     S  +L  + L+D LL  R    +  +        L+ L
Sbjct: 220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL 279

Query: 609 DLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFT 666
            L  N+I       L T+       +                  P+L  ++L+ NRF+
Sbjct: 280 RLQYNEIELDAVRTLKTV-------IDEK--------------MPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 59.0 bits (143), Expect = 3e-09
 Identities = 40/249 (16%), Positives = 74/249 (29%), Gaps = 47/249 (18%)

Query: 91  DLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYF---ICSEIPPEIINLSRLSYLNLSSAG 147
            + +   +        L K   L  + L+ N F       +   +   + L +L L + G
Sbjct: 74  RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133

Query: 148 F-------------FGQIPSEILELSNLVSLDLSHNSYYNLIELKEP---NLGNLVKKLT 191
                            +  +      L S+    N       L+           +   
Sbjct: 134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR------LENGSMKEWAKTFQSHR 187

Query: 192 NLKELALGGVTISSP-----IPHSLANLSSLTLLSLSGCELRGR----IPSLLGNLTKLM 242
            L  + +    I        +   LA    L +L L            +   L +   L 
Sbjct: 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247

Query: 243 YLDLSFNNL-------LGELPTSIGNLDCLKRLDISWNELSGE----LPASIG-NLASLE 290
            L L+   L       + +  + + N+  L+ L + +NE+  +    L   I   +  L 
Sbjct: 248 ELGLNDCLLSARGAAAVVDAFSKLENI-GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 306

Query: 291 QLELSLNRF 299
            LEL+ NRF
Sbjct: 307 FLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.5 bits (134), Expect = 4e-08
 Identities = 66/420 (15%), Positives = 112/420 (26%), Gaps = 118/420 (28%)

Query: 211 LANLSSLTLLSLSGCELRGR----IPSLLGNLTKLMYLDLSFNNL-------LGELPTSI 259
           +A  S +   SL    +       + ++L     +  + LS N +       L E    I
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN---I 56

Query: 260 GNLDCLKRLDISWN---ELSGELPASIGNLA-------SLEQLELSLNRFRGKTPHSMGN 309
            +   L+  + S      +  E+P ++  L         L  + LS N F       + +
Sbjct: 57  ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID 116

Query: 310 F----TRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLE 365
           F    T L  L L +N    +            G  I+       +    +N   L+ + 
Sbjct: 117 FLSKHTPLEHLYLHNNGLGPQ-----------AGAKIARALQELAVNKKAKNAPPLRSII 165

Query: 366 FSHNNFS--GPIDLDMFLVNFKHLEHLSLSSNRLSL--FTKAIFNTSQKFNFVGLRSCNL 421
              N        +      + + L  + +  N +        +          GL  C  
Sbjct: 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE--------GLAYCQ- 216

Query: 422 NEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIE--PSMQNFSYLNLSHNFLIGFYQHPMF 479
                       L+VLDL  N         L     S  N   L L+   L+        
Sbjct: 217 -----------ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC-LLS------- 257

Query: 480 FPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSY 539
                      +  +                   N  L                 L L Y
Sbjct: 258 -----ARGAAAVV-DAFSKL-------------ENIGLQ---------------TLRLQY 283

Query: 540 NNLSG----LLPQCLDNFSDHLSILDLQHNKF------CGSIPQTFLSGRSLMMIDLSDN 589
           N +       L   +D     L  L+L  N+F         I + F +     + +L D 
Sbjct: 284 NEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDM 343

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 45/316 (14%), Positives = 85/316 (26%), Gaps = 95/316 (30%)

Query: 531 SLEILDLSYNNLSG----LLPQCLDNFSDHLSILDLQHNKF----CGSIPQTFLSGRSLM 582
           S+E   L  + ++      +   L      +  + L  N         + +   S + L 
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDD-SVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 583 MIDLSDNLLQGRIP-----------RSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNV 631
           + + SD    GR+            ++L+ C  L  + L +N    T    L        
Sbjct: 64  IAEFSDIFT-GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF----- 117

Query: 632 LILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYM 691
             L  +                 L  + L NN                            
Sbjct: 118 --LSKHT---------------PLEHLYLHNNGLG------------------------P 136

Query: 692 EGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGE----IPT 747
           +      A     AL           +  +    K    L  +I   NR +         
Sbjct: 137 QAGAK-IA----RAL----------QELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181

Query: 748 SIANLKGLQVLSLANNSLHGH-----ILSCLGNLTGLESLDLSNNKFSGQ----IPQQLV 798
           +  + + L  + +  N +        +L  L     L+ LDL +N F+      +   L 
Sbjct: 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241

Query: 799 DLTFLEFFNVSNNNLT 814
               L    +++  L+
Sbjct: 242 SWPNLRELGLNDCLLS 257

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 68.0 bits (166), Expect = 9e-12
 Identities = 87/528 (16%), Positives = 158/528 (29%), Gaps = 89/528 (16%)

Query: 136 SRLSYLNLSSAGFFGQIPSEILELS----NLVSLDLSHNSYYNLIELKEPNLGNLVKKLT 191
              +  NL   G+ G +   I  +S     L  + L          + +  L  + K   
Sbjct: 77  PHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV------VTDDCLELIAKSFK 130

Query: 192 NLKELALGGVT-ISSP-IPHSLANLSSLTLLSLSGCELRGR----IPSLLGNLTKLMYLD 245
           N K L L      S+  +    A   +L  L L   ++       +       T L+ L+
Sbjct: 131 NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLN 190

Query: 246 LSF------NNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRF 299
           +S        + L  L T   NL   K L ++      +L   +     LE  EL    +
Sbjct: 191 ISCLASEVSFSALERLVTRCPNL---KSLKLNRAVPLEKLATLLQRAPQLE--ELGTGGY 245

Query: 300 RGKTPHSM--------GNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQ- 350
             +    +             L  LS   +     LPA +     L  L++S     S  
Sbjct: 246 TAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD 305

Query: 351 IPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQK 410
           +   L    +L+ L            L++     K L  L +  +   +    +  T Q 
Sbjct: 306 LVKLLCQCPKLQRLWVLDYI--EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ- 362

Query: 411 FNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFL 470
               GL S               LE +   C ++       +   +  N +   L     
Sbjct: 363 ----GLVS--------VSMGCPKLESVLYFCRQMTNAALITIAR-NRPNMTRFRLCI--- 406

Query: 471 IGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSN 530
                     P       LD+ +  +              L  +  LT K+  +I   + 
Sbjct: 407 -----IEPKAPDYLTLEPLDIGFGAIVEHCKDL-----RRLSLSGLLTDKVFEYIGTYAK 456

Query: 531 SLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNL 590
            +E+L +++   S L    + +  D L  L+++   F                      L
Sbjct: 457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF------------------GDKAL 498

Query: 591 LQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGT-LRELNVLILKSN 637
           L            +++ L + +  +S      LG  + +LNV ++   
Sbjct: 499 LAN-----ASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 61.5 bits (149), Expect = 8e-10
 Identities = 54/397 (13%), Positives = 113/397 (28%), Gaps = 47/397 (11%)

Query: 86  HVIKLDLSNSCLQGFINSSSGLFKLV----HLEWLDLAFNYFICSEIPPEII-NLSRLSY 140
            + ++ L    +     +   L  +     + + L L+      ++    I      L  
Sbjct: 106 WLEEIRLKRMVV-----TDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKE 160

Query: 141 LNLSSAGFFGQIPSEILELS----NLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKEL 196
           L+L  +         +        +LVSL++S     + +      L  LV +  NLK L
Sbjct: 161 LDLRESDVDDVSGHWLSHFPDTYTSLVSLNIS--CLASEVSFS--ALERLVTRCPNLKSL 216

Query: 197 ALGGVTISSPIPHSLANLSSLTLLSLSGC------ELRGRIPSLLGNLTKLMYLDLSFNN 250
            L        +   L     L  L   G       ++   +   L    +L  L   ++ 
Sbjct: 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA 276

Query: 251 LLGELPTSIGNLDCLKRLDISWNELSGE-LPASIGNLASLEQLELSLNRFRGKTPHSMGN 309
           +   LP        L  L++S+  +    L   +     L++L +               
Sbjct: 277 VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAST 336

Query: 310 FTRLYWLSLASNDFSGE----------LPASFGNLRSLEGLDISECKFS----SQIPSSL 355
              L  L +  ++              L +       LE +     + +      I  + 
Sbjct: 337 CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNR 396

Query: 356 RNLAQLKFLEFSHNNFSGPID------LDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQ 409
            N+ + +                        + + K L  LSLS        + I   ++
Sbjct: 397 PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAK 456

Query: 410 KFNFVGLRSCNLNE--FPNFLKNQHYLEVLDLSCNKI 444
           K   + +     ++    + L     L  L++     
Sbjct: 457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 53.0 bits (127), Expect = 4e-07
 Identities = 50/365 (13%), Positives = 102/365 (27%), Gaps = 60/365 (16%)

Query: 89  KLDLSNSCLQGFINSSSGLF--KLVHLEWLDLAFNYFICSEIPPEII-----NLSRLSYL 141
           +LDL  S +          F      L  L+++    + SE+    +         L  L
Sbjct: 160 ELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISC---LASEVSFSALERLVTRCPNLKSL 216

Query: 142 NLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGV 201
            L+ A    ++ + +     L  L     +   +       L   +     L+ L+    
Sbjct: 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTA-EVRPDVYSGLSVALSGCKELRCLSGFWD 275

Query: 202 TISSPIPHSLANLSSLTLLSLSGCELRGR-------------------------IPSLLG 236
            + + +P   +  S LT L+LS   ++                           +  L  
Sbjct: 276 AVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAS 335

Query: 237 NLTKLMYLDLSFNNLLGELPTS----------IGNLDCLKRLDISWNELSGE-LPASIGN 285
               L  L +  +      P                  L+ +     +++   L     N
Sbjct: 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARN 395

Query: 286 LASLEQLELSLNRFRGKTPHSMG-----------NFTRLYWLSLASNDFSGELPASFGNL 334
             ++ +  L +   +     ++            +   L  LSL+               
Sbjct: 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYA 455

Query: 335 RSLEGLDISECKFSSQ-IPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLS 393
           + +E L ++    S   +   L     L+ LE     F     L       + +  L +S
Sbjct: 456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK-ALLANASKLETMRSLWMS 514

Query: 394 SNRLS 398
           S  +S
Sbjct: 515 SCSVS 519

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.6 bits (159), Expect = 6e-11
 Identities = 78/489 (15%), Positives = 147/489 (30%), Gaps = 139/489 (28%)

Query: 263 DCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFR-------------GKT------ 303
           +   RL   +N+       ++  L    +L  +L   R             GKT      
Sbjct: 114 EQRDRL---YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170

Query: 304 -----PHSMGNFTRLYWLSLASNDFSGELPASFGNL-RSLEGLDISECKFSSQIPSSLRN 357
                     +F +++WL+L + +    +      L   ++    S    SS I   + +
Sbjct: 171 CLSYKVQCKMDF-KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 358 L-AQLKFLEFSHNNFSGPIDLDMFLV-NFKHLEHLSLSSNRLSLFTKAIFNTSQK--FNF 413
           + A+L+ L  S    +  + L    V N K     +LS  ++ L T     T  K   +F
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLN--VQNAKAWNAFNLSC-KI-LLT-----TRFKQVTDF 280

Query: 414 V-GLRSCNL---NEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNF 469
           +    + ++   +       +    EV  L    +  +     +   +   +   LS   
Sbjct: 281 LSAATTTHISLDHHSMTLTPD----EVKSLLLKYLDCRPQD--LPREVLTTNPRRLS--- 331

Query: 470 LIG-----------FYQHPMFFPRNYDGF--TLDLSYNYLQGPLPVPPPQTKHYLVS--- 513
           +I             ++H      N D     ++ S N L+      P + +        
Sbjct: 332 IIAESIRDGLATWDNWKHV-----NCDKLTTIIESSLNVLE------PAEYRKMFDRLSV 380

Query: 514 --NNSLTGKIP------FWICNSSNSLE-ILDLSYNNLSGLLPQCLDNFSDHLSILDLQ- 563
              ++    IP       W     + +  +++  +     L+ +        +SI  +  
Sbjct: 381 FPPSA---HIPTILLSLIWFDVIKSDVMVVVNKLHK--YSLVEK--QPKESTISIPSIYL 433

Query: 564 ------------HNKFCGS--IPQTFLSGRSLMMIDLSDNLLQG----RIPRSLVNCS-- 603
                       H        IP+TF S       DL    L       I   L N    
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSD------DLIPPYLDQYFYSHIGHHLKNIEHP 487

Query: 604 ------SLKFLDLG--NNQISGTFPSWLGTLRELNVLI-LKSNKLHGMIREPNTGCGFPE 654
                  + FLD      +I     +W  +   LN L  LK  K +  I +        E
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY--ICD---NDPKYE 542

Query: 655 LRIIDLSNN 663
             +  + + 
Sbjct: 543 RLVNAILDF 551

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 7e-09
 Identities = 76/534 (14%), Positives = 143/534 (26%), Gaps = 184/534 (34%)

Query: 1   MQFVFSLIFFNFTISNFTSSMLSPLCHS--YERSALL---QFKESLTIIRKTSSYYIWDP 55
           +Q +   I  N+T  +  SS +    HS   E   LL    ++  L ++       + + 
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-----VQNA 256

Query: 56  CHPKTASWKPEEANIDC---------CLWDGVECNENTGHVIKLDLSNSCLQGFINSSS- 105
                  W     N+ C          + D +     T H+     S             
Sbjct: 257 KA-----WNA--FNLSCKILLTTRFKQVTDFLS-AATTTHISLDHHS----MTLTPDEVK 304

Query: 106 GLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSL 165
            L     L++LD         ++P E++  +    L++        I   I +       
Sbjct: 305 SLL----LKYLDCR-----PQDLPREVLTTNPRR-LSI--------IAESIRD------- 339

Query: 166 DLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGC 225
            L+    +  +            KLT           I S    SL  L           
Sbjct: 340 GLATWDNWKHVNC---------DKLTT---------IIES----SLNVLEPA-------- 369

Query: 226 ELRGRIPSLLGNLTKLMYLDLS-FN-NLLGELPTSIGNLDCLKRLDISWNELSGELPASI 283
           E R             M+  LS F  +    +PT          L + W ++        
Sbjct: 370 EYRK------------MFDRLSVFPPSAH--IPT--------ILLSLIWFDVIKSDV--- 404

Query: 284 GNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDIS 343
                     + +N+                  SL              +  S+  + + 
Sbjct: 405 ---------MVVVNKLHKY--------------SLVEKQ-------PKESTISIPSIYLE 434

Query: 344 ECKFSSQIPSSLRNLAQL--KFLE-------FSHNNFSGPIDLDMFLVNFKHLE-HLSLS 393
                      L N   L    ++       F  ++   P  LD +   + H+  HL   
Sbjct: 435 LKV-------KLENEYALHRSIVDHYNIPKTFDSDDLI-PPYLDQYF--YSHIGHHLKNI 484

Query: 394 SN--RLSLFTKAIFN---TSQKFNFVGLRSCNLNEFPNFLKN-QHYLEVLDLSCNKIHGK 447
            +  R++LF     +     QK               N L+  + Y   +  +  K    
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544

Query: 448 VPKWLIEPSMQNFSYLNLSHNFLIGFY----QHPMFFPRNYDGFTLDLSYNYLQ 497
           V       ++ +F    +  N +   Y    +  +      D    + ++  +Q
Sbjct: 545 V------NAILDFL-PKIEENLICSKYTDLLRIALMAE---DEAIFEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 4e-06
 Identities = 72/474 (15%), Positives = 136/474 (28%), Gaps = 152/474 (32%)

Query: 196 LALGGVTISSPIPHSLANL-----SSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNN 250
           L L        +   L  L      + T  S     ++ RI S+   L +L+      N 
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 251 LLGELPTSIGNLD------CLKRLDIS--------WNELSGELPASIGNLASLEQLELSL 296
           LL      +  L            ++S        + +++  L A+     SL+   ++L
Sbjct: 247 LL------V--LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 297 NRFRGKTPHSMGNFTRLYWLSLASNDFSGELP--ASFGNLRSLEGLDISECKFSSQIPSS 354
                          +  +L     D    LP      N R L           S I  S
Sbjct: 299 T-----PDEVKSLLLK--YLDCRPQD----LPREVLTTNPRRL-----------SIIAES 336

Query: 355 LR------------NLAQL-KFLEFSHNNFSGPIDLDMF--LVNFKHLEHLSLSSNRLSL 399
           +R            N  +L   +E S N         MF  L  F       + +  LSL
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP--PSAHIPTILLSL 394

Query: 400 F-TKAIFNTSQKFNFVGLRSCNLNEFPNFL-----KNQHYLEVLDLSCNKIHGKVPKWLI 453
                I +              +N+   +        +  + +  +   ++  K+     
Sbjct: 395 IWFDVIKSDVMVV---------VNKLHKYSLVEKQPKESTISIPSIYL-ELKVKLEN--- 441

Query: 454 EPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDL------SYNYLQGPLPVPPPQT 507
           E ++         H  ++  Y      P+ +D   L         Y+++ G         
Sbjct: 442 EYAL---------HRSIVDHYN----IPKTFDSDDLIPPYLDQYFYSHI-G--------- 478

Query: 508 KHYLVSNNSLTGKIPF---------WICNSSNSLEILDLSYNNLSGLLP--QCLDNFSDH 556
            H+L  N     ++           ++      +     ++N    +L   Q L  +  +
Sbjct: 479 -HHL-KNIEHPERMTLFRMVFLDFRFL---EQKIRHDSTAWNASGSILNTLQQLKFYKPY 533

Query: 557 LSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDL 610
             I D    K+              ++  + D L   +I  +L+     K+ DL
Sbjct: 534 --ICD-NDPKY------------ERLVNAILDFLP--KIEENLICS---KYTDL 567

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 65.0 bits (158), Expect = 7e-11
 Identities = 73/518 (14%), Positives = 150/518 (28%), Gaps = 82/518 (15%)

Query: 160 SNLVSLDLSHNSYYNLIELKEPNLGN--------LVKKLTNLKELALGGVTISSPIPHSL 211
            NL SL L       +  L   N G         +   L  LK +    + +S      L
Sbjct: 73  PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRL 132

Query: 212 A--NLSSLTLLSLSGCELRGR--IPSLLGNLTKLMYLDLSFNNLLGELPTSIG----NLD 263
           A      L  L L  C       + S++ +  K+  L +  ++   +    +     +  
Sbjct: 133 AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT 192

Query: 264 CLKRLDISWNELSGELPASIGNLAS-LEQL-ELSLNRFRGKTPHSMG----NFTRLYWLS 317
            L+ L+    E +   P  +  +A     L  + +  F             N       S
Sbjct: 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252

Query: 318 LASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDL 377
           L  +    E   +    R L  L +S    +  +P      AQ++ L+  +       D 
Sbjct: 253 LNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE-MPILFPFAAQIRKLDLLYALLETE-DH 310

Query: 378 DMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPN----------- 426
              +    +LE L   +       + +    ++   + +      +              
Sbjct: 311 CTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL 370

Query: 427 --FLKNQHYLEVLDLSCNKIHGKVPKWLIE--PSMQNFSYLNLSHNFLIGFYQHPMFFPR 482
               +    LE + +  + I  +  + +     ++ +F  + L     I           
Sbjct: 371 IALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT---------- 420

Query: 483 NYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNS--LTGKIPFWICNSSNSLEILDLSYN 540
                  DL  +     L +   + + +        LT     +I   S ++  + L Y 
Sbjct: 421 -------DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV 473

Query: 541 NLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLV 600
             S            +L  L+++   F         S R++                 + 
Sbjct: 474 GESDEGLMEFSRGCPNLQKLEMRGCCF---------SERAIAAA--------------VT 510

Query: 601 NCSSLKFLDLGNNQISGTFPSWLGTLRE-LNVLILKSN 637
              SL++L +   + S T    +   R   N+ ++ S 
Sbjct: 511 KLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 54.9 bits (132), Expect = 8e-08
 Identities = 50/353 (14%), Positives = 97/353 (27%), Gaps = 51/353 (14%)

Query: 72  CCLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLV-----HLEWLDLAFNYFICS 126
           C      +      ++  +     C  G          ++      +  LDL +      
Sbjct: 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE 308

Query: 127 EIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGN- 185
           +    I     L  L   +      +         L  L +   +    +E +E  +   
Sbjct: 309 DHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR 368

Query: 186 ----LVKKLTNLKELALGGVTIS----SPIPHSLANLSSLTLLSLSGCE------LRGRI 231
               L +    L+ +A+    I+      I   L NL    L+ L   E      L   +
Sbjct: 369 GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGV 428

Query: 232 PSLLGNLTKLMYLDLSFN--NLLGELPTSIG-NLDCLKRLDISWNELSGE-LPASIGNLA 287
            SLL    KL           L     + IG     ++ + + +   S E L        
Sbjct: 429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCP 488

Query: 288 SLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKF 347
           +L++LE+               F+     +  +             L SL  L +   + 
Sbjct: 489 NLQKLEMRGC-----------CFSERAIAAAVT------------KLPSLRYLWVQGYRA 525

Query: 348 SSQIPSSL---RNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHL-EHLSLSSNR 396
           S      +   R    ++ +                + +  H+  + SL+  R
Sbjct: 526 SMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHILAYYSLAGQR 578

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.6 bits (145), Expect = 9e-10
 Identities = 44/181 (24%), Positives = 71/181 (39%), Gaps = 4/181 (2%)

Query: 191 TNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNN 250
            + K+L L    +SS    +   L+ L LL L+  +L+     +   L  L  L ++ +N
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT-DN 95

Query: 251 LLGELPTSI-GNLDCLKRLDISWNELSGELPASI-GNLASLEQLELSLNRFRGKTPHSMG 308
            L  LP  +   L  L  L +  N+L   LP  +  +L  L  L L  N  +        
Sbjct: 96  KLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154

Query: 309 NFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSH 368
             T L  L L +N        +F  L  L+ L +   +       +  +L +LK L+   
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214

Query: 369 N 369
           N
Sbjct: 215 N 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 8/184 (4%)

Query: 215 SSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSI-GNLDCLKRLDISWN 273
           +    L L   +L          LTKL  L L+ +N L  LP  I   L  L+ L ++ N
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLN-DNKLQTLPAGIFKELKNLETLWVTDN 95

Query: 274 ELSGELPASI-GNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPA-SF 331
           +L   LP  +   L +L +L L  N+ +   P    + T+L +LSL  N+    LP   F
Sbjct: 96  KLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVF 153

Query: 332 GNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLS 391
             L SL+ L +   +       +   L +LK L+  +N     +    F  + + L+ L 
Sbjct: 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEGAF-DSLEKLKMLQ 211

Query: 392 LSSN 395
           L  N
Sbjct: 212 LQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 47/174 (27%), Positives = 67/174 (38%), Gaps = 15/174 (8%)

Query: 104 SSGLF-KLVHLEWLDLAFNYFICSEIPPEIIN-LSRLSYLNLSSAGFFGQIPSEILE-LS 160
            S  F +L  L  L L  N      +P  I   L  L  L ++       +P  + + L 
Sbjct: 53  PSKAFHRLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDNKL-QALPIGVFDQLV 109

Query: 161 NLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSL-ANLSSLTL 219
           NL  L L  N    L  L       +   LT L  L+LG   + S +P  +   L+SL  
Sbjct: 110 NLAELRLDRN---QLKSLPP----RVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKE 161

Query: 220 LSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWN 273
           L L   +L+         LT+L  L L  N L      +  +L+ LK L +  N
Sbjct: 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 62/282 (21%), Positives = 93/282 (32%), Gaps = 75/282 (26%)

Query: 514 NNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQ 573
           N +L  K    +C+ +N+   +D S   L+ + P    N       LDLQ NK      +
Sbjct: 1   NEALC-KKDGGVCSCNNNKNSVDCSSKKLTAI-P---SNIPADTKKLDLQSNKLSSLPSK 55

Query: 574 TFLSGRSLMMIDLSDNLLQ---GRIPRSLVNCSSLKFLDLGNNQI----SGTFPSWLGTL 626
            F     L ++ L+DN LQ     I + L N   L+ L + +N++     G F      L
Sbjct: 56  AFHRLTKLRLLYLNDNKLQTLPAGIFKELKN---LETLWVTDNKLQALPIGVFDQ----L 108

Query: 627 RELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTS 686
             L  L L  N+L  +   P       +L  + L  N     LP   F            
Sbjct: 109 VNLAELRLDRNQLKSL--PPRVFDSLTKLTYLSLGYNELQ-SLPKGVF------------ 153

Query: 687 ELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIP 746
                                                 DK+ + L  + L +N+    +P
Sbjct: 154 --------------------------------------DKLTS-LKELRLYNNQL-KRVP 173

Query: 747 TSI-ANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNN 787
                 L  L+ L L NN L         +L  L+ L L  N
Sbjct: 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 15/158 (9%)

Query: 488 TLDLSYNYLQGPLPVPP------PQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNN 541
            L L+ N LQ    +P          +   V++N L   +P  + +   +L  L L  N 
Sbjct: 65  LLYLNDNKLQT---LPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQ 120

Query: 542 LSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQ-TFLSGRSLMMIDLSDNLLQGRIPRSL- 599
           L  L P+  D+ +  L+ L L +N+   S+P+  F    SL  + L +N L+ R+P    
Sbjct: 121 LKSLPPRVFDSLT-KLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAF 177

Query: 600 VNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSN 637
              + LK L L NNQ+         +L +L +L L+ N
Sbjct: 178 DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 52/336 (15%), Positives = 102/336 (30%), Gaps = 54/336 (16%)

Query: 160 SNLVSLDLSHNSYYNLIELKEPNLGNLVKKL-TNLKELALGGVTISSPIPHSLA-----N 213
             + SLDLS N   NL  +    L         ++  L L G ++       L       
Sbjct: 22  HGVTSLDLSLN---NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78

Query: 214 LSSLTLLSLSGCELRGR-----IPSLLGNLTKLMYLDLSFNNL----LGELPTSIGNLDC 264
            +++T L+LSG  L  +     + +L      +  LDL +N+       E   +  NL  
Sbjct: 79  PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138

Query: 265 -LKRLDISWNELSGELPASIGNL-----ASLEQLELSLNRFRGKTPHSMGNF-----TRL 313
            +  L++  N+L  +    +  +     A++  L L  N    K    +  F       +
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198

Query: 314 YWLSLASNDFSGE-----LPASFGNLRSLEGLDISECKFSSQ----IPSSLRNLAQLKFL 364
             L L++N    +               +  L++            +     +L  L+ +
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258

Query: 365 EFSHNNFS-----GPIDLDMFLVNFKHLEHLSLSSNRLS-----LFTKAIFNTSQKFNFV 414
              ++            L     N + +  +  +   +        +  I   S K +  
Sbjct: 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVP 318

Query: 415 GLRSCNLNE------FPNFLKNQHYLEVLDLSCNKI 444
            L +  L            L     L     +C  +
Sbjct: 319 SLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 53/312 (16%), Positives = 99/312 (31%), Gaps = 54/312 (17%)

Query: 172 YYNLIELKEPN-LGNLVKKLTNLKELALGGVTISSPIPHSLA-----NLSSLTLLSLSGC 225
            Y L      N +         +  L L    + S     L        +S+T L+LSG 
Sbjct: 2   NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN 61

Query: 226 ELRGR-----IPSLLGNLTKLMYLDLSFNNL----LGELPTSIGNLDC-LKRLDISWNEL 275
            L  +     +  L      +  L+LS N L      EL  ++  +   +  LD+ WN+ 
Sbjct: 62  SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121

Query: 276 SGELPASIGNL-----ASLEQLELSLNRFRGKTPHSMGNF-----TRLYWLSLASNDFSG 325
           S +  +          AS+  L L  N    K+   +          +  L+L  N+ + 
Sbjct: 122 SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181

Query: 326 E----LPASFGNL-RSLEGLDISECKFSSQ----IPSSLR-NLAQLKFLEFSHNNF--SG 373
           +    L     ++  S+  LD+S      +    +          +  L    N      
Sbjct: 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241

Query: 374 PIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHY 433
             +L +   + KHL+ + L  + +   +K                           N   
Sbjct: 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKE----------------QCKALGAAFPNIQK 285

Query: 434 LEVLDLSCNKIH 445
           + ++D +  +IH
Sbjct: 286 IILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 47/295 (15%), Positives = 90/295 (30%), Gaps = 46/295 (15%)

Query: 219 LLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIG-----NLDCLKRLDISWN 273
           L    G      +         +  LDLS NNL       +          +  L++S N
Sbjct: 5   LTLHPGSNP---VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN 61

Query: 274 ELSGELPASIG-----NLASLEQLELSLNRFRGKTPHSMGNF-----TRLYWLSLASNDF 323
            L  +    +        A++  L LS N    K+   +          +  L L  NDF
Sbjct: 62  SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121

Query: 324 SGE----LPASFGNL-RSLEGLDISECKFS----SQIPSSLRNL-AQLKFLEFSHNNFS- 372
           S +       +F NL  S+  L++           ++   L  + A +  L    NN + 
Sbjct: 122 SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181

Query: 373 -GPIDL-DMFLVNFKHLEHLSLSSNRL-----SLFTKAIFNTSQKFNFVGLRSCNLNE-- 423
               +L          +  L LS+N L     +       +       + L    L+   
Sbjct: 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241

Query: 424 ---FPNFLKNQHYLEVLDLSCNKIHGKVPKWLIE-----PSMQNFSYLNLSHNFL 470
                    +  +L+ + L  + +     +         P++Q    ++ +   +
Sbjct: 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 47/303 (15%), Positives = 88/303 (29%), Gaps = 64/303 (21%)

Query: 355 LRNLAQLKFLEFSHNNFS--GPIDL-DMFLVNFKHLEHLSLSSNRLS-----LFTKAIFN 406
                 +  L+ S NN      ++L   F      +  L+LS N L         + +  
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 407 TSQKFNFVGLRSCNLNE-----FPNFLKNQHY-LEVLDLSCNKIHGKVPKWLIEPSMQNF 460
                  + L    L+          L    + + VLDL  N    K      +      
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 461 SYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGP--------LPVPPPQTKHYLV 512
           + +                        +L+L  N L           L   P       +
Sbjct: 138 ASIT-----------------------SLNLRGNDLGIKSSDELIQILAAIPANVNSLNL 174

Query: 513 SNNSLTGK----IPFWICNSSNSLEILDLSYNNLS----GLLPQCLDNFSDHLSILDLQH 564
             N+L  K    +  ++ +   S+  LDLS N L       L     +  +H+  L+L  
Sbjct: 175 RGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL 234

Query: 565 NKF----CGSIPQTFLSGRSLMMIDLSDNLLQG-------RIPRSLVNCSSLKFLDLGNN 613
           N        ++     S + L  + L  ++++         +  +  N   +  +D    
Sbjct: 235 NCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294

Query: 614 QIS 616
           +I 
Sbjct: 295 EIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 65/340 (19%), Positives = 112/340 (32%), Gaps = 62/340 (18%)

Query: 112 HLEWLDLAFN-------YFICSEIPPEIINLS--RLSYLNLSSAGFFGQIPSEILELSN- 161
            +  LDL+ N         +         +++   LS  +L           +IL     
Sbjct: 23  GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKN--SDELVQILAAIPA 80

Query: 162 -LVSLDLSHNSYYNLIELKEPNLGNLVKKL----TNLKELALGGVTIS----SPIPHSLA 212
            + SL+LS N       L   +   LVK L      +  L LG    S    S    + +
Sbjct: 81  NVTSLNLSGNF------LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFS 134

Query: 213 NL-SSLTLLSLSGCELRGR-----IPSLLGNLTKLMYLDLSFNNL----LGELPTSIGNL 262
           NL +S+T L+L G +L  +     I  L      +  L+L  NNL      EL   + ++
Sbjct: 135 NLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASI 194

Query: 263 DC-LKRLDISWNELSGELPASIG-----NLASLEQLELSLNRFRGKTPHSMGNF----TR 312
              +  LD+S N L  +  A +          +  L L LN   G +  ++         
Sbjct: 195 PASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH 254

Query: 313 LYWLSLASNDFSG-------ELPASFGNLRSLEGLDISECKFS----SQIPSSLRNLA-Q 360
           L  + L  +            L A+F N++ +  +D +  +        I + +R L+ +
Sbjct: 255 LQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGK 314

Query: 361 LKFLEFSHNNF---SGPIDLDMFLVNFKHLEHLSLSSNRL 397
                  +               L     L     +   L
Sbjct: 315 ADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 38/172 (22%)

Query: 525 ICNSSNSLEILDLSYNNLS----GLLPQCLDNFSDHLSILDLQHNKF----CGSIPQTFL 576
             N+  S+  L+LS N+L       L Q L     +++ L+L  N         + +T  
Sbjct: 46  FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLA 105

Query: 577 SG-RSLMMIDLSDNLLQGR----IPRSLVNC-SSLKFLDLGNNQISGT--------FPSW 622
           +   ++ ++DL  N    +      ++  N  +S+  L+L  N +             + 
Sbjct: 106 AIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAI 165

Query: 623 LGTLRELNVLILKSNKLH--------GMIREPNTGCGFPELRIIDLSNNRFT 666
              +  LN   L+ N L           +           +  +DLS N   
Sbjct: 166 PANVNSLN---LRGNNLASKNCAELAKFLASIPAS-----VTSLDLSANLLG 209

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 34/169 (20%), Positives = 56/169 (33%), Gaps = 38/169 (22%)

Query: 528 SSNSLEILDLSYNNLSG----LLPQCLDNFSDHLSILDLQHNKF----CGSIPQTFLSG- 578
             + +  LDLS NNL       L Q   N    ++ L+L  N         + Q   +  
Sbjct: 20  IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79

Query: 579 RSLMMIDLSDNLLQGRIPRSLV-----NCSSLKFLDLGNNQISGTFPSWLG--------T 625
            ++  ++LS N L  +    LV        ++  LDLG N  S    S           +
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139

Query: 626 LRELNVLILKSNKLH--------GMIREPNTGCGFPELRIIDLSNNRFT 666
           +  LN   L+ N L          ++           +  ++L  N   
Sbjct: 140 ITSLN---LRGNDLGIKSSDELIQILAAIPAN-----VNSLNLRGNNLA 180

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 58.4 bits (141), Expect = 4e-09
 Identities = 64/347 (18%), Positives = 124/347 (35%), Gaps = 44/347 (12%)

Query: 92  LSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQ 151
           L    L          ++L   E L    +    +  P     L     +       F  
Sbjct: 24  LCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMD 83

Query: 152 IP-SEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHS 210
            P +E      +  +DLS++       ++   L  ++ + + L+ L+L G+ +S PI ++
Sbjct: 84  QPLAEHFSPFRVQHMDLSNSV------IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT 137

Query: 211 LANLSSLTLLSLSGCEL--RGRIPSLLGNLTKLMYLDLSFNNLLGELPTSI---GNLDCL 265
           LA  S+L  L+LSGC       + +LL + ++L  L+LS+     E    +      + +
Sbjct: 138 LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197

Query: 266 KRLDIS--WNELSGE-LPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASND 322
            +L++S     L    L   +    +L  L+LS                        S  
Sbjct: 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS-----------------------DSVM 234

Query: 323 FSGELPASFGNLRSLEGLDISECKFSSQI-PSSLRNLAQLKFLEFSHNNFSGPIDLDMFL 381
              +    F  L  L+ L +S C     I P +L  L ++  L+       G +      
Sbjct: 235 LKNDCFQEFFQLNYLQHLSLSRC---YDIIPETLLELGEIPTLK--TLQVFGIVPDGTLQ 289

Query: 382 VNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFL 428
           +  + L HL ++ +  +   +      +     G++     + P+ L
Sbjct: 290 LLKEALPHLQINCSHFTTIARPTIGNKKNQEIWGIKCRLTLQKPSCL 336

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 58.0 bits (139), Expect = 5e-09
 Identities = 40/299 (13%), Positives = 101/299 (33%), Gaps = 22/299 (7%)

Query: 15  SNFTSSMLSPLCHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCL 74
                  +  L    +   +   K +L+         + D           ++  I    
Sbjct: 59  EKTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILKDKKLPSLKQITIGXWG 118

Query: 75  WDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIIN 134
           ++G +C++    +++     +  +G             +++ +   ++    ++ P +  
Sbjct: 119 YEGEDCSDIADGIVENKEKFAHFEGLF--------WGDIDFEEQEISWIEQVDLSPVLDA 170

Query: 135 LSRLSYLNLSSAG--FFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTN 192
           +  L+ L +        G+ P   L+   ++S  L  +   +++    PNL  LV  +  
Sbjct: 171 MPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGV 230

Query: 193 LKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGN---LTKLMYLDLSFN 249
                 G + +  P+        +L  L +   E +  +  +      L +L  +D+S  
Sbjct: 231 EDYGFDGDMNVFRPLFSK-DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289

Query: 250 NL----LGELPTSIGNLDCLKRLDISWNELSGE----LPASIGNLASLEQLELSLNRFR 300
            L       L   +  +  LK +++ +N LS E    L  S+     +   +   + + 
Sbjct: 290 VLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQEYDDDYS 348

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 56.1 bits (134), Expect = 2e-08
 Identities = 34/175 (19%), Positives = 59/175 (33%), Gaps = 25/175 (14%)

Query: 231 IPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIG--NLAS 288
           +  +L  +  L  L +   N L            LK L+I    L   +   I   +L +
Sbjct: 164 LSPVLDAMPLLNNLKIKGTNNLSIGKKP---RPNLKSLEIISGGLPDSVVEDILGSDLPN 220

Query: 289 LEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFS 348
           LE+L L +                 Y      N F            +L+ L I + +  
Sbjct: 221 LEKLVLYVG-------------VEDYGFDGDMNVFRPLFSK--DRFPNLKWLGIVDAEEQ 265

Query: 349 SQIPSSL---RNLAQLKFLEFSHNNFS--GPIDLDMFLVNFKHLEHLSLSSNRLS 398
           + +         L QL+ ++ S    +  G   L   +   KHL+ +++  N LS
Sbjct: 266 NVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 49.6 bits (117), Expect = 3e-06
 Identities = 23/152 (15%), Positives = 56/152 (36%), Gaps = 15/152 (9%)

Query: 334 LRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLS 393
           L ++  L+  + K ++ +    +    LK LE         +  D+   +  +LE L L 
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227

Query: 394 --------SNRLSLFTKAIFNTS-QKFNFVGLRSCNL-NEFPNFLKNQHY---LEVLDLS 440
                      +++F             ++G+      N              LE +D+S
Sbjct: 228 VGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287

Query: 441 CNKIHGKVPKWLIE--PSMQNFSYLNLSHNFL 470
              +  +  + L++    +++  ++N+ +N+L
Sbjct: 288 AGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.9 bits (110), Expect = 2e-05
 Identities = 30/218 (13%), Positives = 76/218 (34%), Gaps = 30/218 (13%)

Query: 594 RIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGF- 652
            I  +    +  + L  G+        SW+    +L+ ++     L+ +  +        
Sbjct: 130 GIVENKEKFAHFEGLFWGDIDFEEQEISWI-EQVDLSPVLDAMPLLNNLKIKGTNNLSIG 188

Query: 653 ----PELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGI 708
               P L+ +++ +               + ++ +  S+L  +E       LV Y  +  
Sbjct: 189 KKPRPNLKSLEIISGGLPD----------SVVEDILGSDLPNLE------KLVLYVGVED 232

Query: 709 YDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIAN---LKGLQVLSLANNSL 765
           Y +   M+    + S D+ PN L  + +        +         L  L+ + ++   L
Sbjct: 233 YGFDGDMNVFRPLFSKDRFPN-LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291

Query: 766 HG----HILSCLGNLTGLESLDLSNNKFSGQIPQQLVD 799
                  +L  +  +  L+ +++  N  S ++ ++L  
Sbjct: 292 TDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.9 bits (97), Expect = 7e-04
 Identities = 25/172 (14%), Positives = 53/172 (30%), Gaps = 25/172 (14%)

Query: 403 AIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSY 462
            + +     N + ++  N        +    L+ L++    +   V + ++   + N   
Sbjct: 166 PVLDAMPLLNNLKIKGTNNLSIGKKPRPN--LKSLEIISGGLPDSVVEDILGSDLPNLEK 223

Query: 463 LNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPP-PQTKHYLVSNNSLTGKI 521
           L L                 +Y     D   N  +        P  K   + +      +
Sbjct: 224 LVLYVGV------------EDYGF---DGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVV 268

Query: 522 PFWICNSS--NSLEILDLSYNNLSG----LLPQCLDNFSDHLSILDLQHNKF 567
                 S     LE +D+S   L+     LL   +D    HL  +++++N  
Sbjct: 269 VEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIK-HLKFINMKYNYL 319

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.4 bits (126), Expect = 5e-08
 Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 16/147 (10%)

Query: 209 HSLANLSSLTLLSLSGCELR-GRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKR 267
                 +++  L L  C+   G+I  L      L +L L    L      S+ NL  L +
Sbjct: 18  LRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-----ISVSNLPKLPK 72

Query: 268 ---LDISWNELSGELPASIGNLASLEQLELSLNRFRG-KTPHSMGNFTRLYWLSLASN-- 321
              L++S N + G L      L +L  L LS N+ +   T   +     L  L L +   
Sbjct: 73  LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

Query: 322 ----DFSGELPASFGNLRSLEGLDISE 344
               D+   +      L  L+G D  +
Sbjct: 133 TNLNDYRESVFKLLPQLTYLDGYDRED 159

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 4/112 (3%)

Query: 285 NLASLEQLELSLNRFR-GKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDIS 343
             A++ +L L   +   GK       F  L +LSL +      + ++   L  L+ L++S
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELS 79

Query: 344 ECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSN 395
           E +    +      L  L  L  S N       L+  L   + L+ L L + 
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLE-PLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 6/111 (5%)

Query: 188 KKLTNLKELALGGVTISSP-IPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDL 246
           +    ++EL L     +   I    A   +L  LSL    L   + +L   L KL  L+L
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSNL-PKLPKLKKLEL 78

Query: 247 SFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLE-LSL 296
           S N + G L      L  L  L++S N+L     +++  L  LE L+ L L
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKD--ISTLEPLKKLECLKSLDL 127

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 3/104 (2%)

Query: 712 SLTMSNKGQMMSYDKVPNFLTGVILSSNRFD-GEIPTSIANLKGLQVLSLANNSLHGHIL 770
            + M  +  +   ++ P  +  ++L + + + G+I    A    L+ LSL N  L    +
Sbjct: 7   GMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SV 64

Query: 771 SCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLT 814
           S L  L  L+ L+LS N+  G +      L  L   N+S N L 
Sbjct: 65  SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 8/89 (8%)

Query: 531 SLEILDLSYNNLSGLLPQCLDNFSD--HLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSD 588
           +LE L L    L       + N      L  L+L  N+  G +        +L  ++LS 
Sbjct: 50  NLEFLSLINVGLI-----SVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104

Query: 589 NLLQG-RIPRSLVNCSSLKFLDLGNNQIS 616
           N L+       L     LK LDL N +++
Sbjct: 105 NKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 27/136 (19%)

Query: 528 SSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLS 587
           +  ++  L L     +    + L     +L  L L +     S+         L  ++LS
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELS 79

Query: 588 DNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPN 647
           +N + G +        +L  L+L  N++          +  L  L               
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLK--------DISTLEPL--------------- 116

Query: 648 TGCGFPELRIIDLSNN 663
                  L+ +DL N 
Sbjct: 117 --KKLECLKSLDLFNC 130

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 6/136 (4%)

Query: 504 PPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQ 563
           P       +  N++   IP    +    L  +DLS N +S L P         L+ L L 
Sbjct: 31  PETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-SLNSLVLY 88

Query: 564 HNKFCGSIPQ-TFLSGRSLMMIDLSDNLLQGRIPR-SLVNCSSLKFLDLGNNQISGTFPS 621
            NK    +P+  F    SL ++ L+ N +   +   +  +  +L  L L +N++      
Sbjct: 89  GNKI-TELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146

Query: 622 WLGTLRELNVLILKSN 637
               LR +  + L  N
Sbjct: 147 TFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 11/147 (7%)

Query: 152 IPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSL 211
           IP+ +     +  + L  N+   +     P           L+ + L    IS   P + 
Sbjct: 26  IPTNLP--ETITEIRLEQNTIKVI----PPGA---FSPYKKLRRIDLSNNQISELAPDAF 76

Query: 212 ANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSI-GNLDCLKRLDI 270
             L SL  L L G ++     SL   L  L  L L+ N  +  L      +L  L  L +
Sbjct: 77  QGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSL 135

Query: 271 SWNELSGELPASIGNLASLEQLELSLN 297
             N+L      +   L +++ + L+ N
Sbjct: 136 YDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 11/163 (6%)

Query: 287 ASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPA-SFGNLRSLEGLDISEC 345
            ++ ++ L  N  +   P +   + +L  + L++N  S EL   +F  LRSL  L +   
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGN 90

Query: 346 KFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIF 405
           K +    S    L  L+ L  + N  +  + +D F  +  +L  LSL  N+L    K  F
Sbjct: 91  KITELPKSLFEGLFSLQLLLLNANKINC-LRVDAF-QDLHNLNLLSLYDNKLQTIAKGTF 148

Query: 406 NTSQKFNFVGLR------SCNLNEFPNFLKNQHYLEVLDLSCN 442
           +  +    + L        C+L    ++L   + +E     C 
Sbjct: 149 SPLRAIQTMHLAQNPFICDCHLKWLADYLH-TNPIETSGARCT 190

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 13/133 (9%)

Query: 488 TLDLSYNYLQGPLPVPP------PQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNN 541
            + L  N ++    +PP       + +   +SNN ++ ++         SL  L L  N 
Sbjct: 36  EIRLEQNTIKV---IPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNK 91

Query: 542 LSGLLPQCLDNFSDHLSILDLQHNKFCGSIP-QTFLSGRSLMMIDLSDNLLQGRIPRSLV 600
           ++ L     +     L +L L  NK    +    F    +L ++ L DN LQ     +  
Sbjct: 92  ITELPKSLFEGLF-SLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149

Query: 601 NCSSLKFLDLGNN 613
              +++ + L  N
Sbjct: 150 PLRAIQTMHLAQN 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 14/133 (10%)

Query: 513 SNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIP 572
           SN  L  KIP  I         L L+ N  + L    +      L  ++  +NK    I 
Sbjct: 19  SNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIE 73

Query: 573 Q-TFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQIS----GTFPSWLGTLR 627
           +  F     +  I L+ N L+    +      SLK L L +N+I+     +F      L 
Sbjct: 74  EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIG----LS 129

Query: 628 ELNVLILKSNKLH 640
            + +L L  N++ 
Sbjct: 130 SVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 31/147 (21%), Positives = 54/147 (36%), Gaps = 10/147 (6%)

Query: 152 IPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSL 211
           IP  I        L L++N +  L    E     + KKL  L+++      I+     + 
Sbjct: 26  IPEHIP--QYTAELRLNNNEFTVL----EAT--GIFKKLPQLRKINFSNNKITDIEEGAF 77

Query: 212 ANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSI-GNLDCLKRLDI 270
              S +  + L+   L      +   L  L  L L  +N +  +       L  ++ L +
Sbjct: 78  EGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR-SNRITCVGNDSFIGLSSVRLLSL 136

Query: 271 SWNELSGELPASIGNLASLEQLELSLN 297
             N+++   P +   L SL  L L  N
Sbjct: 137 YDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 5/134 (3%)

Query: 191 TNLKELALGGVTISS-PIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFN 249
               EL L     +          L  L  ++ S  ++           + +  + L+ +
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT-S 90

Query: 250 NLLGELPTSI-GNLDCLKRLDISWNELSGELPASI-GNLASLEQLELSLNRFRGKTPHSM 307
           N L  +   +   L+ LK L +  N ++  +       L+S+  L L  N+     P + 
Sbjct: 91  NRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149

Query: 308 GNFTRLYWLSLASN 321
                L  L+L +N
Sbjct: 150 DTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 3/135 (2%)

Query: 504 PPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQ 563
           P  T    ++NN  T      I      L  ++ S N ++ +     +  S  ++ + L 
Sbjct: 31  PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-GVNEILLT 89

Query: 564 HNKFCGSIP-QTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSW 622
            N+   ++  + F    SL  + L  N +      S +  SS++ L L +NQI+   P  
Sbjct: 90  SNRL-ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA 148

Query: 623 LGTLRELNVLILKSN 637
             TL  L+ L L +N
Sbjct: 149 FDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 36/143 (25%), Positives = 53/143 (37%), Gaps = 25/143 (17%)

Query: 116 LDLAFNYFICSEIPPEII--NLSRLSYLNLSS-------AGFFGQIPSEILELSNLVSLD 166
           L L  N F  + +    I   L +L  +N S+        G F          S +  + 
Sbjct: 37  LRLNNNEF--TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-------ASGVNEIL 87

Query: 167 LSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCE 226
           L+ N    L  +   +   + K L +LK L L    I+     S   LSS+ LLSL   +
Sbjct: 88  LTSN---RLENV--QH--KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ 140

Query: 227 LRGRIPSLLGNLTKLMYLDLSFN 249
           +    P     L  L  L+L  N
Sbjct: 141 ITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 26/164 (15%), Positives = 59/164 (35%), Gaps = 10/164 (6%)

Query: 287 ASLEQLELSLNRFRGKTPHSM-GNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISEC 345
               +L L+ N F       +     +L  ++ ++N  +     +F     +  + ++  
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 346 KFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIF 405
           +  +      + L  LK L    N  +  +  D F +    +  LSL  N+++      F
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSF-IGLSSVRLLSLYDNQITTVAPGAF 149

Query: 406 NTSQKFNFVGLR------SCNLNEFPNFLKNQHYLEVLDLSCNK 443
           +T    + + L       +C L     +L+ +  +   +  C K
Sbjct: 150 DTLHSLSTLNLLANPFNCNCYLAWLGEWLR-KKRIVTGNPRCQK 192

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 34/140 (24%), Positives = 51/140 (36%), Gaps = 16/140 (11%)

Query: 213 NLSSLTLLSLSGCEL-RGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRL--- 268
             S +  L L       G++  L     +L +L      L     TSI NL  L +L   
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-----TSIANLPKLNKLKKL 69

Query: 269 DISWNELSGELPASIGNLASLEQLELSLNRFRG-KTPHSMGNFTRLYWLSLASN------ 321
           ++S N +SG L        +L  L LS N+ +   T   +     L  L L +       
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129

Query: 322 DFSGELPASFGNLRSLEGLD 341
           D+   +      L  L+G D
Sbjct: 130 DYRENVFKLLPQLTYLDGYD 149

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 728 PNFLTGVILSSNRFD-GEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSN 786
           P+ +  ++L ++R + G++       + L+ LS  N  L    ++ L  L  L+ L+LS+
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL--TSIANLPKLNKLKKLELSD 73

Query: 787 NKFSGQIPQQLVDLTFLEFFNVSNNNLT 814
           N+ SG +         L   N+S N + 
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 13/111 (11%)

Query: 158 ELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSL 217
             S++  L L ++   N  +L+      L  +   L+ L+   V ++S I + L  L+ L
Sbjct: 15  TPSDVKELVLDNSRS-NEGKLE-----GLTDEFEELEFLSTINVGLTS-IAN-LPKLNKL 66

Query: 218 TLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRL 268
             L LS   + G +  L      L +L+LS N +       +  ++ LK+L
Sbjct: 67  KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI-----KDLSTIEPLKKL 112

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 8/89 (8%)

Query: 531 SLEILDLSYNNLSGLLPQCLDNFSD--HLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSD 588
            LE L      L+      + N      L  L+L  N+  G +        +L  ++LS 
Sbjct: 43  ELEFLSTINVGLT-----SIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG 97

Query: 589 NLLQG-RIPRSLVNCSSLKFLDLGNNQIS 616
           N ++       L    +LK LDL N +++
Sbjct: 98  NKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 36/140 (25%), Positives = 55/140 (39%), Gaps = 33/140 (23%)

Query: 226 ELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGN 285
           ELR R PS   ++ +L  LD S +N  G+L       + L+ L      L+     SI N
Sbjct: 10  ELRNRTPS---DVKEL-VLDNSRSNE-GKLEGLTDEFEELEFLSTINVGLT-----SIAN 59

Query: 286 LASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISEC 345
           L  L +L+                      L L+ N  SG L        +L  L++S  
Sbjct: 60  LPKLNKLK---------------------KLELSDNRVSGGLEVLAEKCPNLTHLNLSGN 98

Query: 346 KFSSQIPSSLRNLAQLKFLE 365
           K      S++  L +L+ L+
Sbjct: 99  KIKD--LSTIEPLKKLENLK 116

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 528 SSNSLEILDLSYN-NLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDL 586
           + + ++ L L  + +  G L    D F + L  L   +     SI         L  ++L
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEF-EELEFLSTINVGL-TSIAN-LPKLNKLKKLEL 71

Query: 587 SDNLLQGRIPRSLVNCSSLKFLDLGNNQISG-TFPSWLGTLRELNVLILKSN 637
           SDN + G +      C +L  L+L  N+I   +    L  L  L  L L + 
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 20/83 (24%), Positives = 28/83 (33%), Gaps = 4/83 (4%)

Query: 594 RIPRSLVNCSSLKFLDLGNNQISGTFPSW-LGTLRELNVLILKSNKLHGMIREPNTGCGF 652
                L    +L  L + N Q         L  L EL  L +  + L  +   P+     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV--APDAFHFT 79

Query: 653 PELRIIDLSNNRFTGKLPSKYFQ 675
           P L  ++LS N     L  K  Q
Sbjct: 80  PRLSRLNLSFNALE-SLSWKTVQ 101

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 7e-06
 Identities = 21/120 (17%), Positives = 33/120 (27%), Gaps = 27/120 (22%)

Query: 351 IPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQK 410
               L     L  L   +      ++L         L +L++  + L       F+    
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDL-RGLGELRNLTIVKSGLRFVAPDAFH---- 77

Query: 411 FNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFL 470
                                  L  L+LS N +     K +   S+Q    L LS N L
Sbjct: 78  ----FTPR---------------LSRLNLSFNALESLSWKTVQGLSLQE---LVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 1e-05
 Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 2/95 (2%)

Query: 230 RIPSLLGNLTKLMYLDLSFNNLLGELPT-SIGNLDCLKRLDISWNELSGELPASIGNLAS 288
                L     L  L +     L  L    +  L  L+ L I  + L    P +      
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 289 LEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDF 323
           L +L LS N     +  ++   + L  L L+ N  
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 2/97 (2%)

Query: 249 NNLLGELPTSIGNLDCLKRLDISWNELSGELPA-SIGNLASLEQLELSLNRFRGKTPHSM 307
            +   +    +   + L  L I   +    L    +  L  L  L +  +  R   P + 
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 308 GNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISE 344
               RL  L+L+ N        +   L SL+ L +S 
Sbjct: 77  HFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 23/116 (19%), Positives = 43/116 (37%), Gaps = 15/116 (12%)

Query: 526 CNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSG-RSLMMI 584
           C    +L+ L     +L G          ++L+ L +++ +    +    L G   L  +
Sbjct: 15  CTRDGALDSLH----HLPGA---------ENLTELYIENQQHLQHLELRDLRGLGELRNL 61

Query: 585 DLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLH 640
            +  + L+   P +      L  L+L  N +       +  L  L  L+L  N LH
Sbjct: 62  TIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 3e-05
 Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 190 LTNLKELALGGVTISSPIP-HSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSF 248
             NL EL +        +    L  L  L  L++    LR   P       +L  L+LSF
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 249 NNLLGELPTSIGNLDCLKRLDISWNEL 275
           N L      ++  L  L+ L +S N L
Sbjct: 90  NALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 3e-05
 Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 1/78 (1%)

Query: 738 SNRFDGEIPTSIANLKGLQVLSLANNSLHGHI-LSCLGNLTGLESLDLSNNKFSGQIPQQ 796
           +     +    +   + L  L + N     H+ L  L  L  L +L +  +      P  
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 797 LVDLTFLEFFNVSNNNLT 814
                 L   N+S N L 
Sbjct: 76  FHFTPRLSRLNLSFNALE 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 3e-05
 Identities = 19/97 (19%), Positives = 27/97 (27%), Gaps = 4/97 (4%)

Query: 304 PHSMGNFTRLYWLSLASNDFSGELPA-SFGNLRSLEGLDISECKFSSQIPSSLRNLAQLK 362
            H +     L  L + +      L       L  L  L I +       P +     +L 
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 363 FLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSL 399
            L  S N     +           L+ L LS N L  
Sbjct: 84  RLNLSFNALES-LSWKTV--QGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 7e-05
 Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 7/100 (7%)

Query: 152 IPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSL 211
               +    NL  L + +      ++  E      ++ L  L+ L +    +    P + 
Sbjct: 23  SLHHLPGAENLTELYIENQ---QHLQHLELRD---LRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 212 ANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNL 251
                L+ L+LS   L       +  L+ L  L LS N L
Sbjct: 77  HFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 5e-04
 Identities = 17/112 (15%), Positives = 35/112 (31%), Gaps = 9/112 (8%)

Query: 261 NLDCLKRLDISWNELSGELPASIGNLASLEQLELS-LNRFRGKTPHSMGNFTRLYWLSLA 319
            L C +   +            +    +L +L +      +      +     L  L++ 
Sbjct: 12  GLRCTRDGALD-------SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 320 SNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNF 371
            +      P +F     L  L++S     S    +++ L  L+ L  S N  
Sbjct: 65  KSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 29/155 (18%)

Query: 152 IPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSL 211
           + + +  L     L LS N     IE     + +L   + NL+ L+LG   I   I +  
Sbjct: 40  MDATLSTLKACKHLALSTN----NIE----KISSL-SGMENLRILSLGRNLIKK-IENLD 89

Query: 212 ANLSSLTLLSLSGCELRGRIPSL--LGNLTKLMYLDLSFNNL--LGELPTSIGNLDCLKR 267
           A   +L  L +S      +I SL  +  L  L  L +S N +   GE+   +  LD L+ 
Sbjct: 90  AVADTLEELWISYN----QIASLSGIEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLED 144

Query: 268 LDISWNELSGELPAS----------IGNLASLEQL 292
           L ++ N L  +   +          +  L +L++L
Sbjct: 145 LLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 25/134 (18%)

Query: 174 NLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPS 233
           + I + E     +  +   + EL      I   +  +L+ L +   L+LS       I  
Sbjct: 9   DAIRIFEERKSVVATEAEKV-ELHGMIPPIEK-MDATLSTLKACKHLALSTN----NIEK 62

Query: 234 L--LGNLTKLMYLDLSFNNLLGELPTSIGNLDC----LKRLDISWNELSGELPASIGNLA 287
           +  L  +  L  L L  N +       I NLD     L+ L IS+N+++     S+  + 
Sbjct: 63  ISSLSGMENLRILSLGRNLI-----KKIENLDAVADTLEELWISYNQIA-----SLSGIE 112

Query: 288 SLEQLE---LSLNR 298
            L  L    +S N+
Sbjct: 113 KLVNLRVLYMSNNK 126

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 32/140 (22%), Positives = 55/140 (39%), Gaps = 19/140 (13%)

Query: 531 SLEILDLSYNNLSGLLPQCLDNFSD--HLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSD 588
           + + L LS NN+       + + S   +L IL L  N     I        +L  + +S 
Sbjct: 49  ACKHLALSTNNIE-----KISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISY 102

Query: 589 NLLQGRIPRSLVNCSSLKFLDLGNNQISGTFP-SWLGTLRELNVLILKSNKLHGMIREPN 647
           N +   +   +    +L+ L + NN+I+       L  L +L  L+L  N L+   +E N
Sbjct: 103 NQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN 160

Query: 648 TGCG--------FPELRIID 659
                        P L+ +D
Sbjct: 161 ATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 267 RLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGE 326
            L      +  ++ A++  L + + L LS N        S+     L  LSL  N    +
Sbjct: 29  ELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE--KISSLSGMENLRILSLGRNLIK-K 84

Query: 327 LPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKH 386
           +        +LE L IS  + +S   S +  L  L+ L  S+N  +   ++D  L     
Sbjct: 85  IENLDAVADTLEELWISYNQIAS--LSGIEKLVNLRVLYMSNNKITNWGEID-KLAALDK 141

Query: 387 LEHLSLSSNRLS 398
           LE L L+ N L 
Sbjct: 142 LEDLLLAGNPLY 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 18/114 (15%)

Query: 89  KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGF 148
            L LS +     I   S L  + +L  L L  N     +I         L  L +S    
Sbjct: 52  HLALSTNN----IEKISSLSGMENLRILSLGRNLI--KKIENLDAVADTLEELWISY--- 102

Query: 149 FGQIP--SEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGG 200
             QI   S I +L NL  L +S+N   N  E+ +      +  L  L++L L G
Sbjct: 103 -NQIASLSGIEKLVNLRVLYMSNNKITNWGEIDK------LAALDKLEDLLLAG 149

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 736 LSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFS--GQI 793
           L  N    +I    A    L+ L ++ N +    LS +  L  L  L +SNNK +  G+I
Sbjct: 77  LGRNLIK-KIENLDAVADTLEELWISYNQIA--SLSGIEKLVNLRVLYMSNNKITNWGEI 133

Query: 794 PQQLVDLTFLEFFNVSNNNLTGPIPQGNQFP 824
             +L  L  LE   ++ N L     + N   
Sbjct: 134 -DKLAALDKLEDLLLAGNPLYNDYKENNATS 163

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 33/135 (24%), Positives = 48/135 (35%), Gaps = 19/135 (14%)

Query: 165 LDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSG 224
           + L+      LIE +     N V      +EL L G  I   I +  A L     +  S 
Sbjct: 2   VKLTAE----LIE-QAAQYTNAV----RDRELDLRGYKIPV-IENLGATLDQFDAIDFSD 51

Query: 225 CELRGRIPSL--LGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPAS 282
            E    I  L     L +L  L ++ N +          L  L  L ++ N L       
Sbjct: 52  NE----IRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE--LGD 105

Query: 283 IGNLASLEQLE-LSL 296
           +  LASL+ L  L +
Sbjct: 106 LDPLASLKSLTYLCI 120

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 28/133 (21%), Positives = 47/133 (35%), Gaps = 7/133 (5%)

Query: 534 ILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQG 593
           ++ L+   +         N       LDL+  K    I     +      ID SDN ++ 
Sbjct: 1   MVKLTAELIEQA--AQYTNAV-RDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIR- 55

Query: 594 RIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFP 653
           ++         LK L + NN+I          L +L  LIL +N L   + + +      
Sbjct: 56  KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLK 113

Query: 654 ELRIIDLSNNRFT 666
            L  + +  N  T
Sbjct: 114 SLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 24/156 (15%), Positives = 36/156 (23%), Gaps = 53/156 (33%)

Query: 210 SLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLD 269
              N      L L G ++   I +L   L +   +D S N +       +     L+RL 
Sbjct: 14  QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI-----RKLDGFPLLRRLK 67

Query: 270 ISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPA 329
                                                         L + +N        
Sbjct: 68  ---------------------------------------------TLLVNNNRICRIGEG 82

Query: 330 SFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLE 365
               L  L  L ++           L  LA LK L 
Sbjct: 83  LDQALPDLTELILTNNSLVE--LGDLDPLASLKSLT 116

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 750 ANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVS 809
           A L     +  ++N +    L     L  L++L ++NN+           L  L    ++
Sbjct: 39  ATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96

Query: 810 NNNLT 814
           NN+L 
Sbjct: 97  NNSLV 101

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 34/164 (20%), Positives = 58/164 (35%), Gaps = 23/164 (14%)

Query: 485 DGFTLDLSYNYL-QGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLS 543
           +    +L    +               + +N+ +             ++  L L  N L 
Sbjct: 20  ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGI---QYLPNVRYLALGGNKLH 76

Query: 544 GLLPQCLDNFSDHLSILDLQHNKFCGSIPQT-FLSGRSLMMIDLSDNLLQ---GRIPRSL 599
            +    L   ++ L+ L L  N+   S+P   F    +L  + L +N LQ     +   L
Sbjct: 77  DI--SALKELTN-LTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL 132

Query: 600 VNCSSLKFLDLGNNQI----SGTFPSWLGTLRELNVLILKSNKL 639
            N   L +L+L +NQ+     G F      L  L  L L  N+L
Sbjct: 133 TN---LTYLNLAHNQLQSLPKGVFDK----LTNLTELDLSYNQL 169

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 42/169 (24%), Positives = 62/169 (36%), Gaps = 22/169 (13%)

Query: 504 PPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQ 563
           P  T+   + +  L   +          L  L+L YN L  L     D+ ++ L  L L 
Sbjct: 34  PADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE-LGTLGLA 91

Query: 564 HNKFCGSIPQ-TFLSGRSLMMIDLSDNLLQGRIPR----SLVNCSSLKFLDLGNNQIS-- 616
           +N+   S+P   F     L  + L  N L+  +P      L     LK L L  NQ+   
Sbjct: 92  NNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTK---LKELRLNTNQLQSI 146

Query: 617 --GTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNN 663
             G F      L  L  L L +N+L  +           +L+ I L  N
Sbjct: 147 PAGAFDK----LTNLQTLSLSTNQLQSVPH--GAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 38/155 (24%), Positives = 60/155 (38%), Gaps = 8/155 (5%)

Query: 244 LDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASI-GNLASLEQLELSLNRFRGK 302
           LDL    L      +   L  L  L++ +N+L   L A +  +L  L  L L+ N+    
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASL 98

Query: 303 TPHSMGNFTRLYWLSLASNDFSGELPAS-FGNLRSLEGLDISECKFSSQIPSSL-RNLAQ 360
                 + T+L  L L  N     LP+  F  L  L+ L ++  +  S IP+     L  
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTN 156

Query: 361 LKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSN 395
           L+ L     N    +    F      L+ ++L  N
Sbjct: 157 LQTLSL-STNQLQSVPHGAF-DRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 13/172 (7%)

Query: 152 IPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSL 211
           +PS I   ++   LDL       L +          + LT L  L L    + +      
Sbjct: 29  VPSGIP--ADTEKLDLQSTGLATLSD-------ATFRGLTKLTWLNLDYNQLQTLSAGVF 79

Query: 212 ANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSI-GNLDCLKRLDI 270
            +L+ L  L L+  +L      +  +LT+L  L L   N L  LP+ +   L  LK L +
Sbjct: 80  DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG-GNQLKSLPSGVFDRLTKLKELRL 138

Query: 271 SWNELSGELPASI-GNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASN 321
           + N+L   +PA     L +L+ L LS N+ +     +     +L  ++L  N
Sbjct: 139 NTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 43/149 (28%), Positives = 59/149 (39%), Gaps = 16/149 (10%)

Query: 152 IPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGG---VTISSPIP 208
           +P+ I   +N   L L    + N I   EP +      L NLKEL LG      +   + 
Sbjct: 34  VPAGIP--TNAQILYL----HDNQITKLEPGV---FDSLINLKELYLGSNQLGALPVGVF 84

Query: 209 HSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRL 268
            SL  L   T+L L   +L     ++   L  L  L +   N L ELP  I  L  L  L
Sbjct: 85  DSLTQL---TVLDLGTNQLTVLPSAVFDRLVHLKELFMC-CNKLTELPRGIERLTHLTHL 140

Query: 269 DISWNELSGELPASIGNLASLEQLELSLN 297
            +  N+L      +   L+SL    L  N
Sbjct: 141 ALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 54/373 (14%), Positives = 108/373 (28%), Gaps = 82/373 (21%)

Query: 316 LSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPI 375
           L  A N     L      +++L+ L+ ++           + L   + L+    ++    
Sbjct: 6   LLSAHN--RAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHY-EFQ 62

Query: 376 DLDMFLVNFKHLEHLSLSSNRLSLF-TKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYL 434
           +          L  L+L+  R++      +           L S            +H L
Sbjct: 63  NQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAA--------VLGS-----------GRHAL 103

Query: 435 EVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYN 494
           + ++L+  ++     + L+ P       L L  N L                     +  
Sbjct: 104 DEVNLASCQLDPAGLRTLL-PVFLRARKLGLQLNSL------------------GPEACK 144

Query: 495 YLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICN---SSNSLEILDLSYNNL--------- 542
            L+  L     Q     +SNN LT      +      + S+  L L +  L         
Sbjct: 145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA 204

Query: 543 SGLLPQCLDNFSDHLSILDLQHNKF----CGSIPQTFLSGRSLMMIDLSDNLLQ------ 592
           + L           L  L++ +N        ++ +      SL ++ L  N L       
Sbjct: 205 AQLDRNR------QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQV 258

Query: 593 -GRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCG 651
              +  +    + +         +S     W   L E+     ++       R       
Sbjct: 259 LRDLGGAAEGGARVVVSLTEGTAVS---EYWSVILSEV----QRNLNSWDRARVQRH--- 308

Query: 652 FPELRIIDLSNNR 664
             EL + DL ++R
Sbjct: 309 -LELLLRDLEDSR 320

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	922
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.71
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.7
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.66
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.66
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.62
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.58
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.57
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.54
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.54
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.51
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.44
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.43
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.42
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.41
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.4
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.4
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.39
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.39
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.38
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.35
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.34
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.2
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.17
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.17
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.16
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.14
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.77
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.73
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.72
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.7
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.54
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.36
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.34
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.34
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.79
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.76
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.98
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.94
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.84
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.64
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	81.93

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3e-91  Score=853.37  Aligned_cols=710  Identities=31%  Similarity=0.430  Sum_probs=550.5

Q ss_pred             CCCCHHHHHHHHHHhhcCCcCCCCCcccccCCCCCCCCCCCCCCCCCCCccccceEecCCCCcEEEEECCCCCCCCc---
Q 002435           24 PLCHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCLWDGVECNENTGHVIKLDLSNSCLQGF---  100 (922)
Q Consensus        24 ~~~~~~~~~all~~k~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~---  100 (922)
                      +.+.++|++||++||+++.++.             .+++|+.   +++||.|+||+|+  .++|++|+|+++.+.|.   
T Consensus         7 ~~~~~~~~~all~~k~~~~~~~-------------~l~~W~~---~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~   68 (768)
T 3rgz_A            7 SQSLYREIHQLISFKDVLPDKN-------------LLPDWSS---NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSA   68 (768)
T ss_dssp             -CCHHHHHHHHHHHHTTCSCTT-------------SSTTCCT---TSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHH
T ss_pred             ccCCHHHHHHHHHHHhhCCCcc-------------cccCCCC---CCCCcCCcceEEC--CCcEEEEECCCCCcCCccCc
Confidence            3467899999999999998542             5789986   6899999999998  58999999999999997   


Q ss_pred             ccCccccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCch--hhcCCCCCCEEEcCCCCCCCcccc
Q 002435          101 INSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPS--EILELSNLVSLDLSHNSYYNLIEL  178 (922)
Q Consensus       101 ~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~~~~~~~~  178 (922)
                      +++  .+.++++|+.++++.+.+.  .+|+.++++++|++|||++|.+.|.+|.  .++++++|++|++++|.+.     
T Consensus        69 l~~--~l~~L~~L~~l~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~-----  139 (768)
T 3rgz_A           69 VSS--SLLSLTGLESLFLSNSHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-----  139 (768)
T ss_dssp             HHH--HTTTCTTCCEEECTTSCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEE-----
T ss_pred             cCh--hHhccCcccccCCcCCCcC--CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccC-----
Confidence            665  8899999999999999873  3678899999999999999999999998  9999999999999999743     


Q ss_pred             cCCChhHH-HhcCCCCCEEEcCCCcCCCCCchh---ccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCC
Q 002435          179 KEPNLGNL-VKKLTNLKELALGGVTISSPIPHS---LANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGE  254 (922)
Q Consensus       179 ~~~~l~~~-~~~l~~L~~L~L~~n~~~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  254 (922)
                        +.+|.. +.++++|++|++++|.+++..+..   +.++++|++|++++|.+.+..+.  ..+++|++|++++|.+++.
T Consensus       140 --~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~  215 (768)
T 3rgz_A          140 --FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTG  215 (768)
T ss_dssp             --CCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSC
T ss_pred             --CcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCC
Confidence              223332 378999999999999999988877   88999999999999999877654  8899999999999999988


Q ss_pred             cccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCC
Q 002435          255 LPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNL  334 (922)
Q Consensus       255 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  334 (922)
                      +|. ++++++|++|++++|.+++.+|..+.++++|++|++++|.+.+..|..  .+++|++|++++|.+++.+|..+...
T Consensus       216 ~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~  292 (768)
T 3rgz_A          216 IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGA  292 (768)
T ss_dssp             CCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTT
T ss_pred             Ccc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhh
Confidence            877 999999999999999999999999999999999999999999877765  88999999999999998999888775


Q ss_pred             -CCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCC-Ccc
Q 002435          335 -RSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQ-KFN  412 (922)
Q Consensus       335 -~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~-~L~  412 (922)
                       ++|++|++++|++++.+|..++.+++|++|++++|.+.+.++...+ ..+++|++|++++|.+++..+..+..++ +|+
T Consensus       293 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l-~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~  371 (768)
T 3rgz_A          293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL-LKMRGLKVLDLSFNEFSGELPESLTNLSASLL  371 (768)
T ss_dssp             CTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHH-TTCTTCCEEECCSSEEEECCCTTHHHHTTTCS
T ss_pred             cCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHH-hcCCCCCEEeCcCCccCccccHHHHhhhcCCc
Confidence             9999999999999999999999999999999999999988887655 7888899999998888765544444443 555


Q ss_pred             EEEecCCCCC-CCcccccC--CCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceE
Q 002435          413 FVGLRSCNLN-EFPNFLKN--QHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTL  489 (922)
Q Consensus       413 ~L~L~~~~l~-~lp~~l~~--~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L  489 (922)
                      .|++++|.++ .+|..+..  +++|++|++++|++++.+|..+.  .+++|++|++                        
T Consensus       372 ~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L------------------------  425 (768)
T 3rgz_A          372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS--NCSELVSLHL------------------------  425 (768)
T ss_dssp             EEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG--GCTTCCEEEC------------------------
T ss_pred             EEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHh--cCCCCCEEEC------------------------
Confidence            5555555554 34444333  44555555555555555555544  4444444444                        


Q ss_pred             eccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccC
Q 002435          490 DLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCG  569 (922)
Q Consensus       490 ~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~  569 (922)
                                             ++|.+++.+|..+.. +++|+.|++++|.+++.+|..+..++ +|++|++++|++++
T Consensus       426 -----------------------s~N~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~N~l~~  480 (768)
T 3rgz_A          426 -----------------------SFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVK-TLETLILDFNDLTG  480 (768)
T ss_dssp             -----------------------CSSEEESCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCCS
T ss_pred             -----------------------cCCcccCcccHHHhc-CCCCCEEECCCCcccCcCCHHHcCCC-CceEEEecCCcccC
Confidence                                   444444455555555 66677777777777666666666665 57777777777766


Q ss_pred             CCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCC
Q 002435          570 SIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTG  649 (922)
Q Consensus       570 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  649 (922)
                      .+|..+..+++|++|++++|++++.+|.++..+++|++|+|++|++++.+|..++.+++|++|++++|++.|.+|...  
T Consensus       481 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~--  558 (768)
T 3rgz_A          481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM--  558 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG--
T ss_pred             cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH--
Confidence            666666667777777777777766666666667777777777777766667667777777777777777766666543  


Q ss_pred             CCCCCccE---------EEccCCc-------------CCCCCChhhhhccccceecccccccccccccccchhccccccc
Q 002435          650 CGFPELRI---------IDLSNNR-------------FTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALG  707 (922)
Q Consensus       650 ~~l~~L~~---------LdLs~N~-------------l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~  707 (922)
                      .....+..         ..+.++.             +.|..|.. +..+..+..+++....+.                
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~l~~~~~~----------------  621 (768)
T 3rgz_A          559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ-LNRLSTRNPCNITSRVYG----------------  621 (768)
T ss_dssp             GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGG-GGGGGGTCCSCTTSCEEE----------------
T ss_pred             hcccchhhhhccccccccccccccccccccccccccccccccchh-hhccccccccccccceec----------------
Confidence            12222222         2222221             12222211 111111111111111000                


Q ss_pred             eeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCC
Q 002435          708 IYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNN  787 (922)
Q Consensus       708 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N  787 (922)
                                 +.........+.++.|||++|+++|.+|.+|+++++|+.|||++|+++|.||+.|+++++|++||||+|
T Consensus       622 -----------g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N  690 (768)
T 3rgz_A          622 -----------GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN  690 (768)
T ss_dssp             -----------EECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred             -----------ccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCC
Confidence                       011111122467999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccCcccccCCCCCCeEeccCCccccCCCCCCCCCCCCccccCCCcCCCCCCCCCCCCCCC
Q 002435          788 KFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLCGKPLPKECENDE  850 (922)
Q Consensus       788 ~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~~~~~~~~~~~s~~gn~~lcg~~~~~~c~~~~  850 (922)
                      +++|.||..++++++|++||+|+|+|+|+||.++||.+|...+|.|||++||.|++ .|....
T Consensus       691 ~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~  752 (768)
T 3rgz_A          691 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN  752 (768)
T ss_dssp             CCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred             cccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence            99999999999999999999999999999999999999999999999999999987 786543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=6e-71  Score=674.17  Aligned_cols=650  Identities=29%  Similarity=0.397  Sum_probs=466.3

Q ss_pred             CCCCeeeCCCCCCCCC--CCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhH--H
Q 002435          111 VHLEWLDLAFNYFICS--EIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGN--L  186 (922)
Q Consensus       111 ~~L~~L~Ls~n~~~~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~--~  186 (922)
                      .+++.|||+++.+.+.  .+|+.++++++|+.++++.+.+. .+|..++++++|++|||++|.+.       +.+|.  .
T Consensus        50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~-------~~~~~~~~  121 (768)
T 3rgz_A           50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLS-------GPVTTLTS  121 (768)
T ss_dssp             TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEE-------EEGGGGGG
T ss_pred             CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCC-------CcCCChHH
Confidence            4677888888877642  15677888888888888887663 35677888888888888888732       33444  6


Q ss_pred             HhcCCCCCEEEcCCCcCCCCCchhc-cCCCCCCEEeccCccCCccCccc---cCCCCCCCEEeCcCCCCCCCcccccCCC
Q 002435          187 VKKLTNLKELALGGVTISSPIPHSL-ANLSSLTLLSLSGCELRGRIPSL---LGNLTKLMYLDLSFNNLLGELPTSIGNL  262 (922)
Q Consensus       187 ~~~l~~L~~L~L~~n~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~~~~l~~l  262 (922)
                      +.++++|++|++++|.+.+.+|..+ .++++|++|++++|.+++..|..   +.++++|++|++++|.+++..+.  ..+
T Consensus       122 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l  199 (768)
T 3rgz_A          122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRC  199 (768)
T ss_dssp             GGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTC
T ss_pred             HhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccC
Confidence            6777777777777777766666554 66777777777777777666655   66677777777777776655442  666


Q ss_pred             CCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEec
Q 002435          263 DCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDI  342 (922)
Q Consensus       263 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  342 (922)
                      ++|++|++++|.+++.+|. +.++++|++|++++|.+++..|..+..+++|++|++++|.+++.+|..  .+++|++|++
T Consensus       200 ~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L  276 (768)
T 3rgz_A          200 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSL  276 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEEC
T ss_pred             CcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEEC
Confidence            7777777777777665555 666777777777777776666666666777777777777666655543  5666666666


Q ss_pred             CCCccCccCchhhcCC-CCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCC
Q 002435          343 SECKFSSQIPSSLRNL-AQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNL  421 (922)
Q Consensus       343 s~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l  421 (922)
                      ++|++++.+|..+... ++|++|++++|.+++.++.. + ..+++|++|++++|.+.+                      
T Consensus       277 ~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~-~~l~~L~~L~L~~n~l~~----------------------  332 (768)
T 3rgz_A          277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-F-GSCSLLESLALSSNNFSG----------------------  332 (768)
T ss_dssp             CSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-G-GGCTTCCEEECCSSEEEE----------------------
T ss_pred             cCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-H-hcCCCccEEECCCCcccC----------------------
Confidence            6666666666665543 66666666666666554432 1 455666666666665552                      


Q ss_pred             CCCccc-ccCCCCccEEECcCCCCCCCCCccccccCCC-CccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCC
Q 002435          422 NEFPNF-LKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQ-NFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGP  499 (922)
Q Consensus       422 ~~lp~~-l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~  499 (922)
                       .+|.. +..+++|++|++++|++++.+|..+.  .++ +|++|++++|.+++..+.....                   
T Consensus       333 -~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~--~l~~~L~~L~Ls~N~l~~~~~~~~~~-------------------  390 (768)
T 3rgz_A          333 -ELPMDTLLKMRGLKVLDLSFNEFSGELPESLT--NLSASLLTLDLSSNNFSGPILPNLCQ-------------------  390 (768)
T ss_dssp             -ECCHHHHTTCTTCCEEECCSSEEEECCCTTHH--HHTTTCSEEECCSSEEEEECCTTTTC-------------------
T ss_pred             -cCCHHHHhcCCCCCEEeCcCCccCccccHHHH--hhhcCCcEEEccCCCcCCCcChhhhh-------------------
Confidence             33332 44555555566666655555555544  333 5555555555554433222111                   


Q ss_pred             CCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCC
Q 002435          500 LPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGR  579 (922)
Q Consensus       500 ~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~  579 (922)
                        ...++++.|++++|.+++.+|..+.. +++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++
T Consensus       391 --~~~~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~  466 (768)
T 3rgz_A          391 --NPKNTLQELYLQNNGFTGKIPPTLSN-CSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVK  466 (768)
T ss_dssp             --STTCCCCEEECCSSEEEEECCGGGGG-CTTCCEEECCSSEEESCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCT
T ss_pred             --cccCCccEEECCCCccccccCHHHhc-CCCCCEEECcCCcccCcccHHHhcCC-CCCEEECCCCcccCcCCHHHcCCC
Confidence              11345777777777888888888887 99999999999999999999999998 799999999999999999999999


Q ss_pred             CccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEE
Q 002435          580 SLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIID  659 (922)
Q Consensus       580 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~Ld  659 (922)
                      +|++|++++|++++.+|..+.++++|++|+|++|++++.+|.+++.+++|++|+|++|++.+.+|..+  ..+++|+.||
T Consensus       467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~  544 (768)
T 3rgz_A          467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL--GDCRSLIWLD  544 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GGCTTCCEEE
T ss_pred             CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999998776  6789999999


Q ss_pred             ccCCcCCCCCChhhhhccccceecccc-cc--cccccccccchhccccccceeeeeeeeeecccccccccccccceEEEe
Q 002435          660 LSNNRFTGKLPSKYFQCWNAMQVVNTS-EL--RYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVIL  736 (922)
Q Consensus       660 Ls~N~l~g~ip~~~~~~~~~l~~l~~~-~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L  736 (922)
                      +++|+++|.+|..++.....+ .++.. ..  .+............      ....  ....+...........+..+++
T Consensus       545 Ls~N~l~g~ip~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~l~~~~~~~l  615 (768)
T 3rgz_A          545 LNTNLFNGTIPAAMFKQSGKI-AANFIAGKRYVYIKNDGMKKECHG------AGNL--LEFQGIRSEQLNRLSTRNPCNI  615 (768)
T ss_dssp             CCSSEEESBCCGGGGTTTTCB-CCSTTCSCEEEEEECCSCCTTCCS------SEEE--EECTTCCGGGGGGGGGTCCSCT
T ss_pred             CCCCccCCcCChHHhcccchh-hhhccccccccccccccccccccc------cccc--cccccccchhhhcccccccccc
Confidence            999999999998876543322 22211 11  01100000000000      0000  0000000000111234566788


Q ss_pred             ccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccC
Q 002435          737 SSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGP  816 (922)
Q Consensus       737 s~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~  816 (922)
                      +.|.++|.+|..++.+++|+.|||++|+++|.+|..++++++|+.||||+|+++|.||..+++++.|++||+|+|+++|.
T Consensus       616 ~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~  695 (768)
T 3rgz_A          616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR  695 (768)
T ss_dssp             TSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEC
T ss_pred             ccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC-CCCCCCccccCCC
Q 002435          817 IPQGN-QFPTFDKTSFNGN  834 (922)
Q Consensus       817 iP~~~-~~~~~~~~s~~gn  834 (922)
                      ||... .+..+......+|
T Consensus       696 ip~~l~~l~~L~~L~ls~N  714 (768)
T 3rgz_A          696 IPQAMSALTMLTEIDLSNN  714 (768)
T ss_dssp             CCGGGGGCCCCSEEECCSS
T ss_pred             CChHHhCCCCCCEEECcCC
Confidence            99752 2333333334444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=6.4e-59  Score=563.19  Aligned_cols=598  Identities=23%  Similarity=0.247  Sum_probs=389.0

Q ss_pred             EECCCCCCCCcccCccccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCC
Q 002435           90 LDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSH  169 (922)
Q Consensus        90 L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  169 (922)
                      ++.++++++.. +.  .+.  +++++|+|++|.+.+. .+..++++++|++|+|++|.+.+..|..++++++|++|++++
T Consensus         9 ~~cs~~~L~~i-p~--~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~   82 (680)
T 1ziw_A            9 ADCSHLKLTQV-PD--DLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH   82 (680)
T ss_dssp             EECCSSCCSSC-CS--CSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred             eECCCCCcccc-cc--ccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence            45555555443 11  222  5666777776666542 334566666666666666666666666666666666666666


Q ss_pred             CCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCC
Q 002435          170 NSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFN  249 (922)
Q Consensus       170 n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n  249 (922)
                      |.+                               ++..+..++++++|++|++++|++.+..|..++++++|++|++++|
T Consensus        83 n~l-------------------------------~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  131 (680)
T 1ziw_A           83 NEL-------------------------------SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN  131 (680)
T ss_dssp             SCC-------------------------------CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS
T ss_pred             Ccc-------------------------------CccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC
Confidence            654                               3333334555555555555555555444445555555555555555


Q ss_pred             CCCCCcccccCCCCCCcEEEcccCCCCCCchhhhh--CCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcc
Q 002435          250 NLLGELPTSIGNLDCLKRLDISWNELSGELPASIG--NLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGEL  327 (922)
Q Consensus       250 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  327 (922)
                      .+++..|..++++++|++|++++|.+++..+..+.  .+++|++|++++|.+.+..|..+..+++|+.+++.++.+.+..
T Consensus       132 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~  211 (680)
T 1ziw_A          132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSL  211 (680)
T ss_dssp             CCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHH
T ss_pred             cccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhh
Confidence            55555555555555555555555555544444332  3355555555555555555555555555555555555443211


Q ss_pred             ccccc---CCCCCceEecCCCccCccCchhhcCCCC--ccEEEccCCCCcCccchhhhhhccCCcceEeCcCcccccccc
Q 002435          328 PASFG---NLRSLEGLDISECKFSSQIPSSLRNLAQ--LKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTK  402 (922)
Q Consensus       328 p~~l~---~l~~L~~L~Ls~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  402 (922)
                      ...+.   ..++|++|++++|.+.+..|..+..++.  |++|++++|.+++..+ ..+ ..+++|++|++++|.+.+..+
T Consensus       212 ~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~-~~l~~L~~L~L~~n~l~~~~~  289 (680)
T 1ziw_A          212 TEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN-DSF-AWLPQLEYFFLEYNNIQHLFS  289 (680)
T ss_dssp             HHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECT-TTT-TTCTTCCEEECCSCCBSEECT
T ss_pred             HHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCc-ccc-cCcccccEeeCCCCccCccCh
Confidence            11110   2345666666666665555555555433  6666666665553322 222 455666666666666665555


Q ss_pred             ccccCCCCccEEEecCCCCC------CCcc----cccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCcccc
Q 002435          403 AIFNTSQKFNFVGLRSCNLN------EFPN----FLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIG  472 (922)
Q Consensus       403 ~~~~~~~~L~~L~L~~~~l~------~lp~----~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~  472 (922)
                      ..|..+++|+.|++++|...      .+|.    .+..+++|++|++++|.+.+..+..+.  .+++|++|++++|.+..
T Consensus       290 ~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~~~~  367 (680)
T 1ziw_A          290 HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT--GLINLKYLSLSNSFTSL  367 (680)
T ss_dssp             TTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTT--TCTTCCEEECTTCBSCC
T ss_pred             hhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhc--cccCCcEEECCCCchhh
Confidence            55556666666666554322      3333    567788888888888888887777666  77888888888776532


Q ss_pred             ccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhh
Q 002435          473 FYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDN  552 (922)
Q Consensus       473 ~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~  552 (922)
                      .......+                                     .     . .. .++|+.|++++|++++..|..+..
T Consensus       368 ~~l~~~~f-------------------------------------~-----~-~~-~~~L~~L~L~~n~l~~~~~~~~~~  403 (680)
T 1ziw_A          368 RTLTNETF-------------------------------------V-----S-LA-HSPLHILNLTKNKISKIESDAFSW  403 (680)
T ss_dssp             CEECTTTT-------------------------------------G-----G-GT-TSCCCEEECTTSCCCEECTTTTTT
T ss_pred             hhcchhhh-------------------------------------c-----c-cc-cCcCceEECCCCCCCeEChhhhhC
Confidence            21110000                                     0     0 00 356888888888888888888887


Q ss_pred             ccCcccEEEcCCCcccCCCc-ccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCc--cCcchhhcCCCCC
Q 002435          553 FSDHLSILDLQHNKFCGSIP-QTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQIS--GTFPSWLGTLREL  629 (922)
Q Consensus       553 l~~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L  629 (922)
                      ++ +|+.|++++|.+++.+| ..|..+++|++|++++|++++..+..|..+++|+.|++++|.+.  +..|..|..+++|
T Consensus       404 l~-~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L  482 (680)
T 1ziw_A          404 LG-HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL  482 (680)
T ss_dssp             CT-TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred             CC-CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC
Confidence            77 68888888888877555 67888888888888888888888888888888888888888876  5678888888888


Q ss_pred             CEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccccccccccccchhcccccccee
Q 002435          630 NVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIY  709 (922)
Q Consensus       630 ~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  709 (922)
                      ++|++++|++++..+..+  .++++|+.|++++|++++..+.. +..                .                
T Consensus       483 ~~L~Ls~N~l~~i~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~-~~~----------------~----------------  527 (680)
T 1ziw_A          483 TILDLSNNNIANINDDML--EGLEKLEILDLQHNNLARLWKHA-NPG----------------G----------------  527 (680)
T ss_dssp             CEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCGGGGSTT-STT----------------S----------------
T ss_pred             CEEECCCCCCCcCChhhh--ccccccCEEeCCCCCccccchhh-ccC----------------C----------------
Confidence            888888888887765544  66788888888888876421110 000                0                


Q ss_pred             eeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcC
Q 002435          710 DYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKF  789 (922)
Q Consensus       710 ~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l  789 (922)
                                 ....-...+.|+.|+|++|+++...+..|+++++|+.|||++|++++..+..|.++++|+.|+|++|+|
T Consensus       528 -----------~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l  596 (680)
T 1ziw_A          528 -----------PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI  596 (680)
T ss_dssp             -----------CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             -----------cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC
Confidence                       000001135689999999999955555799999999999999999988888899999999999999999


Q ss_pred             cccCccccc-CCCCCCeEeccCCccccCCCC
Q 002435          790 SGQIPQQLV-DLTFLEFFNVSNNNLTGPIPQ  819 (922)
Q Consensus       790 ~g~ip~~l~-~L~~L~~L~ls~N~lsg~iP~  819 (922)
                      ++.+|..+. .+++|+.+++++|++.+..+.
T Consensus       597 ~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          597 TSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             CBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CccChhHhcccccccCEEEccCCCcccCCcc
Confidence            999998888 789999999999999988774

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4e-57  Score=547.47  Aligned_cols=595  Identities=21%  Similarity=0.207  Sum_probs=412.4

Q ss_pred             eeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCC
Q 002435          115 WLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLK  194 (922)
Q Consensus       115 ~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~  194 (922)
                      .+|.+++.++  .+|..+.  +++++|+|++|.+.+..+..++++++|++|++++|                        
T Consensus         8 ~~~cs~~~L~--~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n------------------------   59 (680)
T 1ziw_A            8 VADCSHLKLT--QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN------------------------   59 (680)
T ss_dssp             EEECCSSCCS--SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS------------------------
T ss_pred             eeECCCCCcc--ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC------------------------
Confidence            4555555542  2444333  45555555555554444444444444444444444                        


Q ss_pred             EEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCC
Q 002435          195 ELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNE  274 (922)
Q Consensus       195 ~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~  274 (922)
                             .+++..|..++++++|++|++++|.+++..+..|+++++|++|++++|.+++..|..|+++++|++|++++|.
T Consensus        60 -------~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  132 (680)
T 1ziw_A           60 -------TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG  132 (680)
T ss_dssp             -------CCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC
T ss_pred             -------ccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc
Confidence                   4555567777788888888888888876555567888888888888888877766778888888888888888


Q ss_pred             CCCCchhhhhCCCCCCEEEccCCCCCCCCccccc--CCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCc
Q 002435          275 LSGELPASIGNLASLEQLELSLNRFRGKTPHSMG--NFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIP  352 (922)
Q Consensus       275 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~  352 (922)
                      +++..|..+.++++|++|++++|.+++..+..+.  .+++|+.|++++|.+++..|..+..+++|+.|+++++.+.+...
T Consensus       133 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~  212 (680)
T 1ziw_A          133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT  212 (680)
T ss_dssp             CSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHH
T ss_pred             ccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhH
Confidence            8777777777788888888888877766665543  44677777777777776666667777777777777766543222


Q ss_pred             hhh---cCCCCccEEEccCCCCcCccchhhhhhccC--CcceEeCcCccccccccccccCCCCccEEEecCCCCCC-Ccc
Q 002435          353 SSL---RNLAQLKFLEFSHNNFSGPIDLDMFLVNFK--HLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNE-FPN  426 (922)
Q Consensus       353 ~~l---~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~-lp~  426 (922)
                      ..+   ...++|+.|++++|.+.+..+.. + ..++  +|++|++++|.++++.+..|..+++|++|++++|.++. .|.
T Consensus       213 ~~~~~~l~~~~L~~L~L~~n~l~~~~~~~-~-~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  290 (680)
T 1ziw_A          213 EKLCLELANTSIRNLSLSNSQLSTTSNTT-F-LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH  290 (680)
T ss_dssp             HHHHHHHTTSCCCEEECTTSCCCEECTTT-T-GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT
T ss_pred             HHHHHHhhhccccEEEccCCcccccChhH-h-hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChh
Confidence            111   12356666666666665443322 2 2332  36666666666665555555555555555555555542 233


Q ss_pred             cccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCC
Q 002435          427 FLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQ  506 (922)
Q Consensus       427 ~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~  506 (922)
                      .+..+++|++|++++|...+.++..    .++                                    .+........++
T Consensus       291 ~~~~l~~L~~L~L~~~~~~~~~~~~----~lp------------------------------------~i~~~~~~~l~~  330 (680)
T 1ziw_A          291 SLHGLFNVRYLNLKRSFTKQSISLA----SLP------------------------------------KIDDFSFQWLKC  330 (680)
T ss_dssp             TTTTCTTCCEEECTTCBCCC----------CC------------------------------------EECTTTTTTCTT
T ss_pred             hhcCCCCccEEeccchhhhcccccc----ccc------------------------------------ccChhhcccCCC
Confidence            4445555555555544333211100    000                                    000001112456


Q ss_pred             CceeeccCCcccCcCChhhhhcCCccceEEccCccCCCC--CCchhhhcc-CcccEEEcCCCcccCCCcccccCCCCccE
Q 002435          507 TKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGL--LPQCLDNFS-DHLSILDLQHNKFCGSIPQTFLSGRSLMM  583 (922)
Q Consensus       507 l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~--~p~~l~~l~-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  583 (922)
                      ++.+++++|.+++..+..+.. +++|++|++++|.+...  .+..+..+. .+|+.|++++|++++..|..|..+++|++
T Consensus       331 L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  409 (680)
T 1ziw_A          331 LEHLNMEDNDIPGIKSNMFTG-LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV  409 (680)
T ss_dssp             CCEEECCSCCBCCCCTTTTTT-CTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCEEECCCCccCCCChhHhcc-ccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence            666677777776655555554 88999999999976432  223333331 36999999999999999999999999999


Q ss_pred             EecCCCcccccCC-ccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccc--cCCCCCCCCCCCCccEEEc
Q 002435          584 IDLSDNLLQGRIP-RSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHG--MIREPNTGCGFPELRIIDL  660 (922)
Q Consensus       584 L~Ls~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~~~l~~L~~LdL  660 (922)
                      |++++|++++.+| ..+.++++|++|++++|++.+..+..|..+++|+.|++++|.+.+  .+|..+  ..+++|+.|++
T Consensus       410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~--~~l~~L~~L~L  487 (680)
T 1ziw_A          410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF--QPLRNLTILDL  487 (680)
T ss_dssp             EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT--TTCTTCCEEEC
T ss_pred             EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc--ccCCCCCEEEC
Confidence            9999999988665 689999999999999999999999999999999999999999974  445544  78899999999


Q ss_pred             cCCcCCCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEecccc
Q 002435          661 SNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNR  740 (922)
Q Consensus       661 s~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~  740 (922)
                      ++|++++ +|...+..                                                   .+.|+.|+|++|+
T Consensus       488 s~N~l~~-i~~~~~~~---------------------------------------------------l~~L~~L~Ls~N~  515 (680)
T 1ziw_A          488 SNNNIAN-INDDMLEG---------------------------------------------------LEKLEILDLQHNN  515 (680)
T ss_dssp             CSSCCCC-CCTTTTTT---------------------------------------------------CTTCCEEECCSSC
T ss_pred             CCCCCCc-CChhhhcc---------------------------------------------------ccccCEEeCCCCC
Confidence            9999985 44333322                                                   2458889999999


Q ss_pred             ccccCc--------ccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCc
Q 002435          741 FDGEIP--------TSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNN  812 (922)
Q Consensus       741 l~g~ip--------~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~  812 (922)
                      +++..+        ..++++++|++|+|++|+++...+..|+++++|+.|||++|+|++..+..|.++++|+.|++++|+
T Consensus       516 l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~  595 (680)
T 1ziw_A          516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL  595 (680)
T ss_dssp             CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             ccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCc
Confidence            987532        247899999999999999997666789999999999999999999888889999999999999999


Q ss_pred             cccCCCCCC--CCCCCCccccCCCcCCCCCC
Q 002435          813 LTGPIPQGN--QFPTFDKTSFNGNLGLCGKP  841 (922)
Q Consensus       813 lsg~iP~~~--~~~~~~~~s~~gn~~lcg~~  841 (922)
                      +++..|...  .+..+....+.|||+.|+++
T Consensus       596 l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          596 ITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             CCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             CCccChhHhcccccccCEEEccCCCcccCCc
Confidence            999877431  34556667788999999875

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3.1e-54  Score=515.12  Aligned_cols=521  Identities=21%  Similarity=0.197  Sum_probs=331.1

Q ss_pred             CCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCC
Q 002435          138 LSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSL  217 (922)
Q Consensus       138 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L  217 (922)
                      +++|+|++|.+.+..|..++++++|++|++++|++..+       .|..+.++++|++|++++|.+.+..|..++++++|
T Consensus        35 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  107 (606)
T 3t6q_A           35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI-------HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL  107 (606)
T ss_dssp             CCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEE-------CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred             CcEEEccCCccCcCChhHhccCccceEEECCCCcccee-------ChhhccCccccCeeeCCCCcccccChhhhcccccc
Confidence            44444444444444444444444444444444442111       11223333333333333334445556667777777


Q ss_pred             CEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCC--EEEcc
Q 002435          218 TLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLE--QLELS  295 (922)
Q Consensus       218 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~L~  295 (922)
                      ++|++++|++++..+..++++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+  +|+++
T Consensus       108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~  187 (606)
T 3t6q_A          108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN  187 (606)
T ss_dssp             CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECT
T ss_pred             cEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecC
Confidence            7777777777766566677777777777777777764433444477777777777777766666677777777  67777


Q ss_pred             CCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCcc
Q 002435          296 LNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPI  375 (922)
Q Consensus       296 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  375 (922)
                      +|.+.+..|..+.. .+|+.|++++|.   .++..+..+..++...+....+.           .+...         .+
T Consensus       188 ~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~-----------~~~~~---------~i  243 (606)
T 3t6q_A          188 GNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFE-----------DMDDE---------DI  243 (606)
T ss_dssp             TCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCT-----------TSCCC---------CC
T ss_pred             CCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhc-----------ccccc---------cc
Confidence            77776655554433 456666666554   22333333333332222211111           11111         11


Q ss_pred             chhhhhhcc--CCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCcccc
Q 002435          376 DLDMFLVNF--KHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLI  453 (922)
Q Consensus       376 ~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~  453 (922)
                      +...+ ..+  .+|+.|++++|.++++++..|..+++|++|++++|.++.+|..+..+++|++|++++|++.+..|..+.
T Consensus       244 ~~~~~-~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~  322 (606)
T 3t6q_A          244 SPAVF-EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISAS  322 (606)
T ss_dssp             CGGGG-GGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGG
T ss_pred             ChhHh-chhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhh
Confidence            11111 222  267888888888888777777777888888888888777777777777777777777777655554443


Q ss_pred             ccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccc
Q 002435          454 EPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLE  533 (922)
Q Consensus       454 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~  533 (922)
                        .                                                                        +++|+
T Consensus       323 --~------------------------------------------------------------------------l~~L~  328 (606)
T 3t6q_A          323 --N------------------------------------------------------------------------FPSLT  328 (606)
T ss_dssp             --G------------------------------------------------------------------------CTTCS
T ss_pred             --c------------------------------------------------------------------------cCcCC
Confidence              3                                                                        34444


Q ss_pred             eEEccCccCCCCCCc-hhhhccCcccEEEcCCCcccCCC--cccccCCCCccEEecCCCcccccCCccccCCCCCcEEEC
Q 002435          534 ILDLSYNNLSGLLPQ-CLDNFSDHLSILDLQHNKFCGSI--PQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDL  610 (922)
Q Consensus       534 ~L~Ls~N~l~~~~p~-~l~~l~~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  610 (922)
                      +|++++|.+.+.+|. .+..++ +|++|++++|++++..  +..+..+++|++|++++|++++..|..+..+++|++|++
T Consensus       329 ~L~l~~n~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  407 (606)
T 3t6q_A          329 HLSIKGNTKRLELGTGCLENLE-NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL  407 (606)
T ss_dssp             EEECCSCSSCCBCCSSTTTTCT-TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEEC
T ss_pred             EEECCCCCcccccchhhhhccC-cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEEC
Confidence            445555544433332 244444 4555555555555444  455666666666666666666666666666666667777


Q ss_pred             CCCcCccCcch-hhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCC-CCh-hhhhccccceeccccc
Q 002435          611 GNNQISGTFPS-WLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGK-LPS-KYFQCWNAMQVVNTSE  687 (922)
Q Consensus       611 s~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~-ip~-~~~~~~~~l~~l~~~~  687 (922)
                      ++|++++..|. .+..+++|++|++++|++.+..|..+  ..+++|+.|++++|++++. +|. ..+.            
T Consensus       408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~~------------  473 (606)
T 3t6q_A          408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF--DGLPALQHLNLQGNHFPKGNIQKTNSLQ------------  473 (606)
T ss_dssp             TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT--TTCTTCCEEECTTCBCGGGEECSSCGGG------------
T ss_pred             CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH--hCCCCCCEEECCCCCCCccccccchhhc------------
Confidence            66666655443 36666677777777777666655444  4567777777777776531 110 0000            


Q ss_pred             ccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccccc
Q 002435          688 LRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHG  767 (922)
Q Consensus       688 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~  767 (922)
                                                             ..+.|+.|+|++|++++.+|..|+.+++|+.|+|++|++++
T Consensus       474 ---------------------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  514 (606)
T 3t6q_A          474 ---------------------------------------TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS  514 (606)
T ss_dssp             ---------------------------------------GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred             ---------------------------------------cCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc
Confidence                                                   13568899999999999999999999999999999999999


Q ss_pred             cCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCCC
Q 002435          768 HILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQ  819 (922)
Q Consensus       768 ~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~  819 (922)
                      .+|+.+.+++.| .|+|++|++++.+|..+..+++|+.+++++|++.+..+.
T Consensus       515 ~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          515 SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             GGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             CChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            999999999999 999999999999999999999999999999999987763

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=6.3e-53  Score=520.37  Aligned_cols=569  Identities=23%  Similarity=0.266  Sum_probs=371.7

Q ss_pred             CEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCC-chhccCCCCC
Q 002435          139 SYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPI-PHSLANLSSL  217 (922)
Q Consensus       139 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L  217 (922)
                      +..|.+++++ ..+|.   -.++|++|||++|.+..+.       +..+.++++|++|++++|...+.+ |.++.++++|
T Consensus         7 ~~~dcs~~~L-~~vP~---lp~~l~~LdLs~N~i~~i~-------~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L   75 (844)
T 3j0a_A            7 RIAFYRFCNL-TQVPQ---VLNTTERLLLSFNYIRTVT-------ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNL   75 (844)
T ss_dssp             EEEEESCCCS-SCCCS---SCTTCCEEEEESCCCCEEC-------SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTC
T ss_pred             eEEEccCCCC-CCCCC---CCCCcCEEECCCCcCCccC-------hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCC
Confidence            4567777777 45565   4577888888888754331       234567777777777777554444 5667777777


Q ss_pred             CEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccc--cCCCCCCcEEEcccCCCCCCch-hhhhCCCCCCEEEc
Q 002435          218 TLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTS--IGNLDCLKRLDISWNELSGELP-ASIGNLASLEQLEL  294 (922)
Q Consensus       218 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L  294 (922)
                      ++|+|++|.+.+..|..|+++++|++|+|++|.+++.+|..  ++++++|++|++++|.+++..+ ..+.++++|++|++
T Consensus        76 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~L  155 (844)
T 3j0a_A           76 RILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF  155 (844)
T ss_dssp             CEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEE
T ss_pred             CEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEEC
Confidence            77777777777666777777777777777777776655443  6677777777777777765443 45677777777777


Q ss_pred             cCCCCCCCCcccccCC--CCCcEEEeeccCCCCcccccccCCCC------CceEecCCCccCccCchhhcCC---CCccE
Q 002435          295 SLNRFRGKTPHSMGNF--TRLYWLSLASNDFSGELPASFGNLRS------LEGLDISECKFSSQIPSSLRNL---AQLKF  363 (922)
Q Consensus       295 ~~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~------L~~L~Ls~n~l~~~~~~~l~~l---~~L~~  363 (922)
                      ++|.+.+..+..+..+  ++|+.|++++|.+.+..|..+..+++      |++|++++|.+.+..+..+...   .+++.
T Consensus       156 s~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~  235 (844)
T 3j0a_A          156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS  235 (844)
T ss_dssp             ESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSE
T ss_pred             CCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccc
Confidence            7777776666666655  66777777777766666655555444      6666666666665555444322   34555


Q ss_pred             EEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCC--CCccEEEecCCCCCCC-cccccCCCCccEEECc
Q 002435          364 LEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTS--QKFNFVGLRSCNLNEF-PNFLKNQHYLEVLDLS  440 (922)
Q Consensus       364 L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~--~~L~~L~L~~~~l~~l-p~~l~~~~~L~~L~Ls  440 (922)
                      +.++.+.....                 +..+.+.......|..+  ++|+.|++++|.+..+ |..+..+++|+.|+++
T Consensus       236 L~l~~~~~~~~-----------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  298 (844)
T 3j0a_A          236 LILAHHIMGAG-----------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA  298 (844)
T ss_dssp             EECCSSCCBCS-----------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEE
T ss_pred             eeccccccccc-----------------ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECC
Confidence            55543322100                 01122222222222221  3444444444444422 2334444444555555


Q ss_pred             CCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCc
Q 002435          441 CNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGK  520 (922)
Q Consensus       441 ~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~  520 (922)
                      +|++.+..|..+.  .+++|++|++++|                                               .+++.
T Consensus       299 ~n~i~~~~~~~~~--~l~~L~~L~Ls~N-----------------------------------------------~l~~~  329 (844)
T 3j0a_A          299 YNKINKIADEAFY--GLDNLQVLNLSYN-----------------------------------------------LLGEL  329 (844)
T ss_dssp             SCCCCEECTTTTT--TCSSCCEEEEESC-----------------------------------------------CCSCC
T ss_pred             CCcCCCCChHHhc--CCCCCCEEECCCC-----------------------------------------------CCCcc
Confidence            5544444443333  3344444444333                                               33333


Q ss_pred             CChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCcccc
Q 002435          521 IPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLV  600 (922)
Q Consensus       521 ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~  600 (922)
                      .|..+.. +++|+.|++++|++++..+..|..++ +|++|++++|.+++.     ..+++|+.|++++|+++. +|..  
T Consensus       330 ~~~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~-l~~~--  399 (844)
T 3j0a_A          330 YSSNFYG-LPKVAYIDLQKNHIAIIQDQTFKFLE-KLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVT-LPKI--  399 (844)
T ss_dssp             CSCSCSS-CTTCCEEECCSCCCCCCCSSCSCSCC-CCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCC-CCCC--
T ss_pred             CHHHhcC-CCCCCEEECCCCCCCccChhhhcCCC-CCCEEECCCCCCCcc-----cCCCCcchhccCCCCccc-cccc--
Confidence            3333333 67788888888888877777777777 788888888888743     237788888999988883 4433  


Q ss_pred             CCCCCcEEECCCCcCccCc-chhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhcccc
Q 002435          601 NCSSLKFLDLGNNQISGTF-PSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNA  679 (922)
Q Consensus       601 ~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~  679 (922)
                       ..+++.|++++|++++.. +..+..+++|++|+|++|++++..+... ...+++|+.|++++|.+++..+.....    
T Consensus       400 -~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~~~~L~~L~Ls~N~l~~~~~~~~~~----  473 (844)
T 3j0a_A          400 -NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT-PSENPSLEQLFLGENMLQLAWETELCW----  473 (844)
T ss_dssp             -CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS-SCSCTTCCBCEEESCCCSSSCCSCCCS----
T ss_pred             -ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccc-cccCCccccccCCCCccccccccccch----
Confidence             467889999999988753 3446688999999999999987654322 245788999999999887433211000    


Q ss_pred             ceecccccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEe
Q 002435          680 MQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLS  759 (922)
Q Consensus       680 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~  759 (922)
                                                                ..+. ..+.|+.|||++|++++.+|..|..+++|+.||
T Consensus       474 ------------------------------------------~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  510 (844)
T 3j0a_A          474 ------------------------------------------DVFE-GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS  510 (844)
T ss_dssp             ------------------------------------------SCSS-CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEE
T ss_pred             ------------------------------------------hhhc-CcccccEEECCCCcccccChhHccchhhhheeE
Confidence                                                      0000 135688999999999999999999999999999


Q ss_pred             CCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCCCCCCccccCCCcCCCC
Q 002435          760 LANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLCG  839 (922)
Q Consensus       760 Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~~~~~~~~~~~s~~gn~~lcg  839 (922)
                      |++|++++.+|..+.  ++|+.|||++|+|++.+|..+.   .|+.+++++|++.+.++..    .|......++..+||
T Consensus       511 Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~----~f~~~~~~~~~~~~~  581 (844)
T 3j0a_A          511 LNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELS----TFINWLNHTNVTIAG  581 (844)
T ss_dssp             EESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCC----SHHHHHHHTTTTTCC
T ss_pred             CCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccccH----HHHHHHHhcCccccc
Confidence            999999998888777  8999999999999999998765   6889999999999887632    343333456777888


Q ss_pred             CCCCCCCCCCCCC
Q 002435          840 KPLPKECENDEAP  852 (922)
Q Consensus       840 ~~~~~~c~~~~~~  852 (922)
                      .|....|..+...
T Consensus       582 ~~~~~~C~~p~~~  594 (844)
T 3j0a_A          582 PPADIYCVYPDSF  594 (844)
T ss_dssp             CGGGCCCSSCSSS
T ss_pred             ccccCccCCchhh
Confidence            7777788776543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.4e-52  Score=500.87  Aligned_cols=518  Identities=18%  Similarity=0.170  Sum_probs=369.8

Q ss_pred             CCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEccc
Q 002435          193 LKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISW  272 (922)
Q Consensus       193 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~  272 (922)
                      +++|++++|.+++..|..++++++|++|++++|++.+..|..|+++++|++|++++|.+++..|..|+++++|++|++++
T Consensus        35 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  114 (606)
T 3t6q_A           35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQ  114 (606)
T ss_dssp             CCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTT
T ss_pred             CcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccc
Confidence            33444444444444455666666666666666666666666666666677777766666666666666667777777777


Q ss_pred             CCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCc--eEecCCCccCcc
Q 002435          273 NELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLE--GLDISECKFSSQ  350 (922)
Q Consensus       273 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~--~L~Ls~n~l~~~  350 (922)
                      |.+++..+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+++..|..+..+++|+  +|++++|.+.+.
T Consensus       115 n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~  194 (606)
T 3t6q_A          115 TGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI  194 (606)
T ss_dssp             SCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEE
T ss_pred             cCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCcc
Confidence            766655455666667777777777766654433444466777777777776666566666677776  667777777665


Q ss_pred             CchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCc-cccc
Q 002435          351 IPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFP-NFLK  429 (922)
Q Consensus       351 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp-~~l~  429 (922)
                      .|..+.. .+|+.|++++|...   +  .....+..+....+....+.....                   ..++ ..+.
T Consensus       195 ~~~~~~~-~~L~~L~l~~~~~~---~--~~~~~l~~~~l~~l~~~~~~~~~~-------------------~~i~~~~~~  249 (606)
T 3t6q_A          195 EPGAFDS-AVFQSLNFGGTQNL---L--VIFKGLKNSTIQSLWLGTFEDMDD-------------------EDISPAVFE  249 (606)
T ss_dssp             CTTTTTT-CEEEEEECTTCSCH---H--HHHHHTTTCEEEEEECCCCTTSCC-------------------CCCCGGGGG
T ss_pred             ChhHhhh-ccccccccCCchhH---H--HHhhhccccchhheechhhccccc-------------------cccChhHhc
Confidence            5544433 56777777766421   1  111333333322222221111100                   0111 1111


Q ss_pred             CCC--CccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCC
Q 002435          430 NQH--YLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQT  507 (922)
Q Consensus       430 ~~~--~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l  507 (922)
                      .+.  +|++|++++|.+++..+..+.  .+++|++|++++|.++                                    
T Consensus       250 ~l~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~------------------------------------  291 (606)
T 3t6q_A          250 GLCEMSVESINLQKHYFFNISSNTFH--CFSGLQELDLTATHLS------------------------------------  291 (606)
T ss_dssp             GGGGSEEEEEECTTCCCSSCCTTTTT--TCTTCSEEECTTSCCS------------------------------------
T ss_pred             hhhcCceeEEEeecCccCccCHHHhc--cccCCCEEeccCCccC------------------------------------
Confidence            111  577777777777766665554  5666666666666553                                    


Q ss_pred             ceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcc-cccCCCCccEEec
Q 002435          508 KHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQ-TFLSGRSLMMIDL  586 (922)
Q Consensus       508 ~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L  586 (922)
                                  .+|..+.. +++|++|++++|.+++..|..+..++ +|++|++++|.+.+.+|. .+..+++|++|++
T Consensus       292 ------------~lp~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  357 (606)
T 3t6q_A          292 ------------ELPSGLVG-LSTLKKLVLSANKFENLCQISASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDL  357 (606)
T ss_dssp             ------------CCCSSCCS-CTTCCEEECTTCCCSBGGGGCGGGCT-TCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred             ------------CCChhhcc-cccCCEEECccCCcCcCchhhhhccC-cCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence                        23333333 78899999999999988888899988 799999999999876655 4899999999999


Q ss_pred             CCCcccccC--CccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCc
Q 002435          587 SDNLLQGRI--PRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNR  664 (922)
Q Consensus       587 s~N~l~~~~--~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~  664 (922)
                      ++|++++..  +..+..+++|++|++++|++.+..|..|..+++|++|++++|++.+..+.. .+..+++|+.|++++|.
T Consensus       358 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~  436 (606)
T 3t6q_A          358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS-PFQNLHLLKVLNLSHSL  436 (606)
T ss_dssp             CSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC-TTTTCTTCCEEECTTCC
T ss_pred             CCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch-hhhCcccCCEEECCCCc
Confidence            999999876  788999999999999999999999999999999999999999999876544 23678999999999999


Q ss_pred             CCCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEecccccccc
Q 002435          665 FTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGE  744 (922)
Q Consensus       665 l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~  744 (922)
                      +++..|.. +..                                                   .+.|+.|+|++|++++.
T Consensus       437 l~~~~~~~-~~~---------------------------------------------------l~~L~~L~L~~n~l~~~  464 (606)
T 3t6q_A          437 LDISSEQL-FDG---------------------------------------------------LPALQHLNLQGNHFPKG  464 (606)
T ss_dssp             CBTTCTTT-TTT---------------------------------------------------CTTCCEEECTTCBCGGG
T ss_pred             cCCcCHHH-HhC---------------------------------------------------CCCCCEEECCCCCCCcc
Confidence            98765532 111                                                   35688999999999873


Q ss_pred             ---CcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCCCC-
Q 002435          745 ---IPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQG-  820 (922)
Q Consensus       745 ---ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~~-  820 (922)
                         .+..++.+++|++|+|++|++++.+|..|+++++|+.|+|++|++++.+|..+.+++.| +|++++|++++.+|.. 
T Consensus       465 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~  543 (606)
T 3t6q_A          465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLL  543 (606)
T ss_dssp             EECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGH
T ss_pred             ccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhc
Confidence               33679999999999999999999999999999999999999999999999999999999 9999999999887753 


Q ss_pred             CCCCCCCccccCCCcCCCCCC
Q 002435          821 NQFPTFDKTSFNGNLGLCGKP  841 (922)
Q Consensus       821 ~~~~~~~~~s~~gn~~lcg~~  841 (922)
                      ..+..+....+.|||..|.++
T Consensus       544 ~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          544 PILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             HHHHTSSEEECTTCCEECSGG
T ss_pred             ccCCCCCEEeCCCCCccccCC
Confidence            223344556677887766543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.1e-52  Score=501.57  Aligned_cols=518  Identities=22%  Similarity=0.212  Sum_probs=302.8

Q ss_pred             CCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCC
Q 002435          136 SRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLS  215 (922)
Q Consensus       136 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~  215 (922)
                      ++|++|+|++|.+.+..+..++++++|++|++++|.+..+       .|..+.++++|++|++++|.+++..|..+++++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-------~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  104 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI-------EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT  104 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-------CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccccc-------CHHHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence            3445555555555444444455555555555555543211       012233444444444444445565677777778


Q ss_pred             CCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCC-CcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCC----
Q 002435          216 SLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLG-ELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLE----  290 (922)
Q Consensus       216 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----  290 (922)
                      +|++|++++|++.+..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++..+..+..+++|+    
T Consensus       105 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~  184 (606)
T 3vq2_A          105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL  184 (606)
T ss_dssp             TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCC
T ss_pred             cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccc
Confidence            88888888887776666677777788888888877765 4577777777777777777777766666565554443    


Q ss_pred             EEEccCCCCCCCCcccccCCCCCcEEEeeccCCC-CcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCC
Q 002435          291 QLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFS-GELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHN  369 (922)
Q Consensus       291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n  369 (922)
                      +|++++|.+++..+..+... +|+.|++++|.+. +..|..+.+++.|+.+++..+.+.+..        .+.       
T Consensus       185 ~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~--------~l~-------  248 (606)
T 3vq2_A          185 SLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER--------NLE-------  248 (606)
T ss_dssp             EEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC--------CCS-------
T ss_pred             eeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCC--------ccc-------
Confidence            67777777775555544443 6777777777665 345556666666666666544332110        000       


Q ss_pred             CCcCccchhhhhhcc--CCcceEeC-cCccccccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCC
Q 002435          370 NFSGPIDLDMFLVNF--KHLEHLSL-SSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHG  446 (922)
Q Consensus       370 ~l~~~~~~~~~~~~l--~~L~~L~L-s~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~  446 (922)
                          .++...+ ..+  -.++.+++ ..+.+.+..+. +..+++|+.+++++|.+..+| .+..+++|++|++++|.+ +
T Consensus       249 ----~~~~~~~-~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~  320 (606)
T 3vq2_A          249 ----IFEPSIM-EGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-K  320 (606)
T ss_dssp             ----CCCGGGG-TTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-S
T ss_pred             ----ccChHHh-hhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-c
Confidence                0000000 111  13444444 34444444443 555566666666666666555 555566666666666666 4


Q ss_pred             CCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhh
Q 002435          447 KVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWIC  526 (922)
Q Consensus       447 ~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~  526 (922)
                      .+|..    .+++|++|++++|...+.                                               ++  +.
T Consensus       321 ~lp~~----~l~~L~~L~l~~n~~~~~-----------------------------------------------~~--~~  347 (606)
T 3vq2_A          321 QFPTL----DLPFLKSLTLTMNKGSIS-----------------------------------------------FK--KV  347 (606)
T ss_dssp             SCCCC----CCSSCCEEEEESCSSCEE-----------------------------------------------CC--CC
T ss_pred             ccccC----CCCccceeeccCCcCccc-----------------------------------------------hh--hc
Confidence            44422    344444444444422110                                               00  00


Q ss_pred             hcCCccceEEccCccCCCC--CCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCC-ccccCCC
Q 002435          527 NSSNSLEILDLSYNNLSGL--LPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIP-RSLVNCS  603 (922)
Q Consensus       527 ~~~~~L~~L~Ls~N~l~~~--~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~  603 (922)
                      . +++|++|++++|.+++.  .|..+..++ +|++|++++|.+++ +|..+..+++|++|++++|++++..| ..+..++
T Consensus       348 ~-l~~L~~L~ls~n~l~~~~~~~~~~~~~~-~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  424 (606)
T 3vq2_A          348 A-LPSLSYLDLSRNALSFSGCCSYSDLGTN-SLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE  424 (606)
T ss_dssp             C-CTTCCEEECCSSCEEEEEECCHHHHCCS-CCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred             c-CCCCCEEECcCCccCCCcchhhhhccCC-cccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence            1 44555555555555543  244444444 45555555555443 23444444455555555555444444 3444444


Q ss_pred             CCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCC-CChhhhhcccccee
Q 002435          604 SLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGK-LPSKYFQCWNAMQV  682 (922)
Q Consensus       604 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~-ip~~~~~~~~~l~~  682 (922)
                      +|++|++++|++++..|..+..                          +++|+.|++++|++++. +|.. +.       
T Consensus       425 ~L~~L~l~~n~l~~~~~~~~~~--------------------------l~~L~~L~l~~n~l~~~~~~~~-~~-------  470 (606)
T 3vq2_A          425 KLLYLDISYTNTKIDFDGIFLG--------------------------LTSLNTLKMAGNSFKDNTLSNV-FA-------  470 (606)
T ss_dssp             TCCEEECTTSCCEECCTTTTTT--------------------------CTTCCEEECTTCEEGGGEECSC-CT-------
T ss_pred             cCCEEECcCCCCCccchhhhcC--------------------------CCCCCEEECCCCcCCCcchHHh-hc-------
Confidence            4444444444444444444444                          45555555555554432 1211 10       


Q ss_pred             cccccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCC
Q 002435          683 VNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLAN  762 (922)
Q Consensus       683 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~  762 (922)
                                                                  ..+.|+.|+|++|++++.+|..|+++++|++|+|++
T Consensus       471 --------------------------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  506 (606)
T 3vq2_A          471 --------------------------------------------NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH  506 (606)
T ss_dssp             --------------------------------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             --------------------------------------------cCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence                                                        024577778888888888888899999999999999


Q ss_pred             ccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCC-CCCeEeccCCccccCCCC
Q 002435          763 NSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLT-FLEFFNVSNNNLTGPIPQ  819 (922)
Q Consensus       763 N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~-~L~~L~ls~N~lsg~iP~  819 (922)
                      |++++.+|..|+++++|++|||++|+++ .+|..+..++ +|++|++++|++.+..|.
T Consensus       507 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          507 NNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             SCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             CcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            9999999999999999999999999999 5777788887 599999999999987774

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=5.3e-53  Score=503.74  Aligned_cols=527  Identities=20%  Similarity=0.264  Sum_probs=343.5

Q ss_pred             CCCHHHHHHHHHHhhcCCcCCCCCcccccCCCCCCCCCCCCCCCCCCCccc---cceEecCCCCcEEEEECCCCCCCCcc
Q 002435           25 LCHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCLW---DGVECNENTGHVIKLDLSNSCLQGFI  101 (922)
Q Consensus        25 ~~~~~~~~all~~k~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~l~g~~  101 (922)
                      .....|+.||.+|++++..+..  .+  .+...+...+|..   +.+||.|   +||+|+.. ++|++|+|+++++.|.+
T Consensus        26 ~~~~~d~~aL~~~~~~~~~~~w--~~--~~~~~~~~~~W~~---~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~l   97 (636)
T 4eco_A           26 AEYIKDYLALKEIWDALNGKNW--SQ--QGFGTQPGANWNF---NKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRV   97 (636)
T ss_dssp             CHHHHHHHHHHHHHHHTTGGGC--CC--CC------CCCCC---SSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEE
T ss_pred             hhHHHHHHHHHHHHHHcCCCCc--cc--CCcCCccCCCCCC---CCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcC
Confidence            3455799999999999976532  11  1122234678987   6899999   99999865 89999999999999998


Q ss_pred             cCccccccCCCCCeeeCCCCCCC------C-----CCCCccccCCCCCCEEECCCCCCCCcCchhhcC-CCCCCEEEcCC
Q 002435          102 NSSSGLFKLVHLEWLDLAFNYFI------C-----SEIPPEIINLSRLSYLNLSSAGFFGQIPSEILE-LSNLVSLDLSH  169 (922)
Q Consensus       102 ~~~~~l~~l~~L~~L~Ls~n~~~------~-----~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~  169 (922)
                      ++  +++++++|++|+|++|.+.      +     ..+|...  +.+|+ ++++++.+.+.+|..+.. +..+..+++..
T Consensus        98 p~--~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~  172 (636)
T 4eco_A           98 PD--AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQ  172 (636)
T ss_dssp             CG--GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTS
T ss_pred             Ch--HHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccc
Confidence            86  9999999999999999751      1     0244444  56677 888888887777766553 22233333332


Q ss_pred             CCCCCcccccCCChhHHHhcCCCCCEEEcC--CCcCCCCCchhccCCCCCCEEeccCccCCcc-----------------
Q 002435          170 NSYYNLIELKEPNLGNLVKKLTNLKELALG--GVTISSPIPHSLANLSSLTLLSLSGCELRGR-----------------  230 (922)
Q Consensus       170 n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~--~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-----------------  230 (922)
                      ..+..             .....++.+.+.  .|.+++ +|..++++++|++|+|++|.+++.                 
T Consensus       173 ~~~~~-------------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~  238 (636)
T 4eco_A          173 KSIKK-------------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY  238 (636)
T ss_dssp             CCCCC-------------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             ccccc-------------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence            22100             111222323332  466777 788888889999999999888875                 


Q ss_pred             CccccC--CCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCC-CCC-CchhhhhCC------CCCCEEEccCCCCC
Q 002435          231 IPSLLG--NLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNE-LSG-ELPASIGNL------ASLEQLELSLNRFR  300 (922)
Q Consensus       231 ~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~l~  300 (922)
                      +|..++  ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++++      ++|++|++++|.++
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence            888888  88999999999998888888888889999999999988 887 788888776      88888888888888


Q ss_pred             CCCcc--cccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCC-ccEEEccCCCCcCccch
Q 002435          301 GKTPH--SMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQ-LKFLEFSHNNFSGPIDL  377 (922)
Q Consensus       301 ~~~~~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~  377 (922)
                       .+|.  .++.+++|++|++++|.++|.+| .+..+++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|.
T Consensus       319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~  394 (636)
T 4eco_A          319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN  394 (636)
T ss_dssp             -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred             -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch
Confidence             6777  78888888888888888887788 7888888888888888887 67777888888 888888888877 5554


Q ss_pred             hhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCccccccCC
Q 002435          378 DMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSM  457 (922)
Q Consensus       378 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l  457 (922)
                      ......+++|++|++++|.+.+..+..+....                .....+++|++|++++|+++ .+|..+.. .+
T Consensus       395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~----------------~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~-~l  456 (636)
T 4eco_A          395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD----------------PTPFKGINVSSINLSNNQIS-KFPKELFS-TG  456 (636)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC----------------SSCCCCCCEEEEECCSSCCC-SCCTHHHH-TT
T ss_pred             hhhhcccCccCEEECcCCcCCCcchhhhcccc----------------cccccCCCCCEEECcCCccC-cCCHHHHc-cC
Confidence            32212234677777777777665554443000                00003344555555555555 22322210 23


Q ss_pred             CCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEc
Q 002435          458 QNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDL  537 (922)
Q Consensus       458 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~L  537 (922)
                      ++|++|++++|.++.+....+..                                       . +. .+..+++|+.|++
T Consensus       457 ~~L~~L~Ls~N~l~~i~~~~~~~---------------------------------------~-~~-~~~~l~~L~~L~L  495 (636)
T 4eco_A          457 SPLSSINLMGNMLTEIPKNSLKD---------------------------------------E-NE-NFKNTYLLTSIDL  495 (636)
T ss_dssp             CCCSEEECCSSCCSBCCSSSSEE---------------------------------------T-TE-ECTTGGGCCEEEC
T ss_pred             CCCCEEECCCCCCCCcCHHHhcc---------------------------------------c-cc-cccccCCccEEEC
Confidence            44444444444433111100000                                       0 00 0001335666666


Q ss_pred             cCccCCCCCCchhh--hccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcC
Q 002435          538 SYNNLSGLLPQCLD--NFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQI  615 (922)
Q Consensus       538 s~N~l~~~~p~~l~--~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l  615 (922)
                      ++|+++ .+|..+.  .++ +|+.|++++|++++ +|..+..+++|++|+|++|+                  ++++|++
T Consensus       496 s~N~l~-~lp~~~~~~~l~-~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~------------------~ls~N~l  554 (636)
T 4eco_A          496 RFNKLT-KLSDDFRATTLP-YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR------------------DAQGNRT  554 (636)
T ss_dssp             CSSCCC-BCCGGGSTTTCT-TCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB------------------CTTCCBC
T ss_pred             cCCcCC-ccChhhhhccCC-CcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc------------------ccccCcc
Confidence            666665 4555544  444 45556666665554 45555555555555554433                  3355666


Q ss_pred             ccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCC
Q 002435          616 SGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTG  667 (922)
Q Consensus       616 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g  667 (922)
                      .+.+|.++..+++|++|+|++|++ +.+|...    .++|+.||+++|++.+
T Consensus       555 ~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~----~~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          555 LREWPEGITLCPSLTQLQIGSNDI-RKVNEKI----TPNISVLDIKDNPNIS  601 (636)
T ss_dssp             CCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC----CTTCCEEECCSCTTCE
T ss_pred             cccChHHHhcCCCCCEEECCCCcC-CccCHhH----hCcCCEEECcCCCCcc
Confidence            667777777777777777777777 4445443    1677777777776653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.3e-50  Score=483.87  Aligned_cols=536  Identities=20%  Similarity=0.194  Sum_probs=405.9

Q ss_pred             EEECCCCCCCCcccCccccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcC
Q 002435           89 KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLS  168 (922)
Q Consensus        89 ~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  168 (922)
                      .++.++++++....   .+  .++|++|+|++|.+.+. .+..|.++++|++|++++|.+.+..|..++++++|++|+++
T Consensus        15 ~~~c~~~~l~~ip~---~~--~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls   88 (606)
T 3vq2_A           15 TYQCMDQKLSKVPD---DI--PSSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT   88 (606)
T ss_dssp             EEECTTSCCSSCCT---TS--CTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             ceEccCCCcccCCC---CC--CCCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence            45666666665422   23  27899999999998654 45689999999999999999988888889999999999999


Q ss_pred             CCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCc-cCccccCCCCCCCEEeCc
Q 002435          169 HNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRG-RIPSLLGNLTKLMYLDLS  247 (922)
Q Consensus       169 ~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls  247 (922)
                      +|.+..+       .|..+.++++|++|++++|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|++|+++
T Consensus        89 ~n~l~~~-------~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls  161 (606)
T 3vq2_A           89 GNPIQSF-------SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS  161 (606)
T ss_dssp             TCCCCCC-------CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECC
T ss_pred             CCccccc-------ChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEcc
Confidence            9986432       35678899999999999999998888889999999999999999986 579999999999999999


Q ss_pred             CCCCCCCcccccCCCCCCc----EEEcccCCCCCCchhhhhCCCCCCEEEccCCCCC-CCCcccccCCCCCcEEEeeccC
Q 002435          248 FNNLLGELPTSIGNLDCLK----RLDISWNELSGELPASIGNLASLEQLELSLNRFR-GKTPHSMGNFTRLYWLSLASND  322 (922)
Q Consensus       248 ~n~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~  322 (922)
                      +|.+++..+..++.+++|+    +|++++|.+++..+..+. ..+|++|++++|.+. +..|..+.+++.|+.+++..+.
T Consensus       162 ~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~  240 (606)
T 3vq2_A          162 YNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE  240 (606)
T ss_dssp             SSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred             CCcceecChhhhhhhhccccccceeeccCCCcceeCccccc-CceeeeeeccCCccchhHHHHHhccccccccccccccc
Confidence            9999988888887776655    899999999965555444 449999999999987 4567788999999999988765


Q ss_pred             CCCcc------cccccCCC--CCceEec-CCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCc
Q 002435          323 FSGEL------PASFGNLR--SLEGLDI-SECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLS  393 (922)
Q Consensus       323 l~~~~------p~~l~~l~--~L~~L~L-s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls  393 (922)
                      +.+..      +..+..+.  .++.+++ ..+.+.+.+|. +..+++|+.|++++|.+. .++  . +..+++|++|+++
T Consensus       241 ~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~--~-l~~~~~L~~L~l~  315 (606)
T 3vq2_A          241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE--D-VPKHFKWQSLSII  315 (606)
T ss_dssp             CTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC--C-CCTTCCCSEEEEE
T ss_pred             cccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh--h-ccccccCCEEEcc
Confidence            54311      11111111  3444555 44555555554 566666666666666654 233  1 2455566666666


Q ss_pred             CccccccccccccCCCCccEEEecCCCCC-CCcccccCCCCccEEECcCCCCCCCC--CccccccCCCCccEEEccCCcc
Q 002435          394 SNRLSLFTKAIFNTSQKFNFVGLRSCNLN-EFPNFLKNQHYLEVLDLSCNKIHGKV--PKWLIEPSMQNFSYLNLSHNFL  470 (922)
Q Consensus       394 ~n~l~~~~~~~~~~~~~L~~L~L~~~~l~-~lp~~l~~~~~L~~L~Ls~n~l~~~~--p~~~~~~~l~~L~~L~L~~n~l  470 (922)
                      +|.+..++  .+ .+++|+.|++++|... .+  .+..+++|++|++++|++++..  |..+.  .+++|++|++++|.+
T Consensus       316 ~n~l~~lp--~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~--~~~~L~~L~L~~n~l  388 (606)
T 3vq2_A          316 RCQLKQFP--TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDL--GTNSLRHLDLSFNGA  388 (606)
T ss_dssp             SCCCSSCC--CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHH--CCSCCCEEECCSCSE
T ss_pred             cccCcccc--cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhc--cCCcccEeECCCCcc
Confidence            66664444  22 5555666666655333 22  3345555666666666555432  33333  455555555555555


Q ss_pred             ccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchh
Q 002435          471 IGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCL  550 (922)
Q Consensus       471 ~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l  550 (922)
                      ++...                        .....++++.|++++|.+.+..|...+..+++|++|++++|.+++..|..+
T Consensus       389 ~~~~~------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  444 (606)
T 3vq2_A          389 IIMSA------------------------NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF  444 (606)
T ss_dssp             EEECC------------------------CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred             ccchh------------------------hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh
Confidence            44320                        012356788888999988887774444448999999999999999999999


Q ss_pred             hhccCcccEEEcCCCcccC-CCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCC
Q 002435          551 DNFSDHLSILDLQHNKFCG-SIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLREL  629 (922)
Q Consensus       551 ~~l~~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  629 (922)
                      ..++ +|++|++++|++++ .+|..+..+++|++|++++|++++..|..+.++++|++|+|++|++++..|..+..+++|
T Consensus       445 ~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  523 (606)
T 3vq2_A          445 LGLT-SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL  523 (606)
T ss_dssp             TTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTC
T ss_pred             cCCC-CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcC
Confidence            9988 79999999999998 478899999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEcCCCcccccCCCCCCCCCCC-CccEEEccCCcCCCCCChhhhhccc
Q 002435          630 NVLILKSNKLHGMIREPNTGCGFP-ELRIIDLSNNRFTGKLPSKYFQCWN  678 (922)
Q Consensus       630 ~~L~L~~N~l~~~~~~~~~~~~l~-~L~~LdLs~N~l~g~ip~~~~~~~~  678 (922)
                      ++|++++|+++.. |..+  ..++ +|+.|++++|++.|.++..|+..|-
T Consensus       524 ~~L~l~~N~l~~~-p~~~--~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l  570 (606)
T 3vq2_A          524 STLDCSFNRIETS-KGIL--QHFPKSLAFFNLTNNSVACICEHQKFLQWV  570 (606)
T ss_dssp             CEEECTTSCCCCE-ESCG--GGSCTTCCEEECCSCCCCCSSTTHHHHTTT
T ss_pred             CEEECCCCcCccc-CHhH--hhhcccCcEEEccCCCcccCCccHHHHHHH
Confidence            9999999999954 4443  5666 5999999999999999988876653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.3e-51  Score=493.13  Aligned_cols=496  Identities=21%  Similarity=0.259  Sum_probs=305.1

Q ss_pred             CCCCHHHHHHHHHHhhcCCcCCCCCcccccCCCCCCCCCCCCCC--CCCCC--ccc------------cceEecCCCCcE
Q 002435           24 PLCHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEE--ANIDC--CLW------------DGVECNENTGHV   87 (922)
Q Consensus        24 ~~~~~~~~~all~~k~~~~~~~~~~~~~~~~~~~~~~~~w~~~~--~~~~~--c~w------------~gv~c~~~~~~v   87 (922)
                      ..+..+|+.||++||+++.++                 +|+...  ...++  |.|            .||+|+. .++|
T Consensus       264 ~~~~~~d~~ALl~~k~~l~~~-----------------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V  325 (876)
T 4ecn_A          264 TAEYIKDYKALKAIWEALDGK-----------------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRV  325 (876)
T ss_dssp             CCHHHHHHHHHHHHHHHTTGG-----------------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCE
T ss_pred             cccchHHHHHHHHHHHHcCCC-----------------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCE
Confidence            456778999999999999653                 343310  01244  889            9999986 5899


Q ss_pred             EEEECCCCCCCCcccCccccccCCCCCeeeC-CCCCCCCCCCCccc----------------------------------
Q 002435           88 IKLDLSNSCLQGFINSSSGLFKLVHLEWLDL-AFNYFICSEIPPEI----------------------------------  132 (922)
Q Consensus        88 ~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~L-s~n~~~~~~~p~~l----------------------------------  132 (922)
                      +.|+|+++++.|.+++  .++++++|++|+| ++|.+.+. .|-..                                  
T Consensus       326 ~~L~Ls~~~L~G~ip~--~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          326 TGLSLAGFGAKGRVPD--AIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             EEEECTTTCCEEEECG--GGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             EEEECccCCCCCcCch--HHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            9999999999999986  9999999999999 88876544 12110                                  


Q ss_pred             -----------------cCCCCCCEEECCC--CCCCCcCchhhcCCCCCCEEEcCCCCCCCc-ccccCCChhHHHhcCCC
Q 002435          133 -----------------INLSRLSYLNLSS--AGFFGQIPSEILELSNLVSLDLSHNSYYNL-IELKEPNLGNLVKKLTN  192 (922)
Q Consensus       133 -----------------~~l~~L~~L~Ls~--n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~-~~~~~~~l~~~~~~l~~  192 (922)
                                       .....++.+.+..  |.+.+ +|..++++++|++|+|++|+++.. +..  ..+|        
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~--~~~~--------  471 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAV--DWED--------  471 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSS--SCSC--------
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccc--cccc--------
Confidence                             0111122222221  34433 455555555555555555543220 000  0000        


Q ss_pred             CCEEEcCCCcCCCCCchhcc--CCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCC-CCC-CcccccCCC------
Q 002435          193 LKELALGGVTISSPIPHSLA--NLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNN-LLG-ELPTSIGNL------  262 (922)
Q Consensus       193 L~~L~L~~n~~~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~-~~~~~l~~l------  262 (922)
                           .+.+...+.+|..++  ++++|++|+|++|.+.+.+|..++++++|++|+|++|+ +++ .+|..++++      
T Consensus       472 -----~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~  546 (876)
T 4ecn_A          472 -----ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDT  546 (876)
T ss_dssp             -----TTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTT
T ss_pred             -----cccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccc
Confidence                 000001113666666  77777777777777777777777777777777777776 666 566544443      


Q ss_pred             -CCCcEEEcccCCCCCCchh--hhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCC-Cc
Q 002435          263 -DCLKRLDISWNELSGELPA--SIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRS-LE  338 (922)
Q Consensus       263 -~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~  338 (922)
                       ++|++|++++|.++ .+|.  .+.++++|++|+|++|.++ .+| .++.+++|+.|++++|.++ .+|..+..+++ |+
T Consensus       547 l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~  622 (876)
T 4ecn_A          547 GPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVE  622 (876)
T ss_dssp             TTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCC
T ss_pred             cCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCC
Confidence             37777777777777 6666  6777777777777777777 555 6777777777777777776 66766777777 77


Q ss_pred             eEecCCCccCccCchhhcCCCC--ccEEEccCCCCcCccchh---hhhhccCCcceEeCcCccccccccccccCCCCccE
Q 002435          339 GLDISECKFSSQIPSSLRNLAQ--LKFLEFSHNNFSGPIDLD---MFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNF  413 (922)
Q Consensus       339 ~L~Ls~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~  413 (922)
                      +|++++|.++ .+|..+..++.  |+.|++++|.+.+.++..   .....+++|+.|++++|.++.++...+..+++|+.
T Consensus       623 ~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~  701 (876)
T 4ecn_A          623 GLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST  701 (876)
T ss_dssp             EEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSE
T ss_pred             EEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCE
Confidence            7777777777 56666655543  777777777776654321   10013457788888888887777666667778888


Q ss_pred             EEecCCCCCCCcccccC--------CCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCC
Q 002435          414 VGLRSCNLNEFPNFLKN--------QHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYD  485 (922)
Q Consensus       414 L~L~~~~l~~lp~~l~~--------~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  485 (922)
                      |++++|.++.+|..+..        +++|++|+|++|+++ .+|..+....                             
T Consensus       702 L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~-----------------------------  751 (876)
T 4ecn_A          702 IILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATT-----------------------------  751 (876)
T ss_dssp             EECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTT-----------------------------
T ss_pred             EECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhcc-----------------------------
Confidence            88888888877765433        238999999999887 5554432112                             


Q ss_pred             CceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCC-
Q 002435          486 GFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQH-  564 (922)
Q Consensus       486 l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~-  564 (922)
                                                                 +++|+.|+|++|++++ +|..+..++ +|+.|+|++ 
T Consensus       752 -------------------------------------------l~~L~~L~Ls~N~L~~-lp~~l~~L~-~L~~L~Ls~N  786 (876)
T 4ecn_A          752 -------------------------------------------LPYLSNMDVSYNCFSS-FPTQPLNSS-QLKAFGIRHQ  786 (876)
T ss_dssp             -------------------------------------------CTTCCEEECCSSCCSS-CCCGGGGCT-TCCEEECCCC
T ss_pred             -------------------------------------------CCCcCEEEeCCCCCCc-cchhhhcCC-CCCEEECCCC
Confidence                                                       3445555555555554 455555554 455555554 


Q ss_pred             -----CcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcc
Q 002435          565 -----NKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKL  639 (922)
Q Consensus       565 -----N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l  639 (922)
                           |++.+.+|..+..+++|+.|+|++|++ +.+|..+.  ++|+.|||++|++....+..+.....+..+.|.+|+.
T Consensus       787 ~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~  863 (876)
T 4ecn_A          787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT  863 (876)
T ss_dssp             BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred             CCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence                 555555555555555555555555555 34444443  4555555555555544444443333334444444443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=5.1e-50  Score=494.43  Aligned_cols=531  Identities=23%  Similarity=0.205  Sum_probs=350.1

Q ss_pred             EEECCCCCCCCcccCccccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcC-chhhcCCCCCCEEEc
Q 002435           89 KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQI-PSEILELSNLVSLDL  167 (922)
Q Consensus        89 ~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L  167 (922)
                      ..+.++++++...    .  -.++|++|||++|.+.+. .|..|.++++|++|+|++|...+.+ |..++++++|++|+|
T Consensus         8 ~~dcs~~~L~~vP----~--lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~L   80 (844)
T 3j0a_A            8 IAFYRFCNLTQVP----Q--VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL   80 (844)
T ss_dssp             EEEESCCCSSCCC----S--SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEEC
T ss_pred             EEEccCCCCCCCC----C--CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEEC
Confidence            3455566666642    2  346788888888887654 5677888888888888888666666 567778888888888


Q ss_pred             CCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchh--ccCCCCCCEEeccCccCCccCc-cccCCCCCCCEE
Q 002435          168 SHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHS--LANLSSLTLLSLSGCELRGRIP-SLLGNLTKLMYL  244 (922)
Q Consensus       168 s~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L  244 (922)
                      ++|.+..+       .|..+.++++|++|++++|.+++.+|..  ++++++|++|++++|.+.+..+ ..++++++|++|
T Consensus        81 s~N~l~~~-------~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L  153 (844)
T 3j0a_A           81 GSSKIYFL-------HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI  153 (844)
T ss_dssp             TTCCCCEE-------CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred             CCCcCccc-------CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence            88875322       2345666677777777777766655444  6666777777777776665543 456667777777


Q ss_pred             eCcCCCCCCCcccccCCC--CCCcEEEcccCCCCCCchhhhhCCCC------CCEEEccCCCCCCCCcccccCC---CCC
Q 002435          245 DLSFNNLLGELPTSIGNL--DCLKRLDISWNELSGELPASIGNLAS------LEQLELSLNRFRGKTPHSMGNF---TRL  313 (922)
Q Consensus       245 ~Ls~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~l~~l---~~L  313 (922)
                      ++++|.+++..+..+..+  ++|+.|++++|.+.+..|..+..+++      |++|++++|.+.+..+..+...   +++
T Consensus       154 ~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l  233 (844)
T 3j0a_A          154 DFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA  233 (844)
T ss_dssp             EEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCB
T ss_pred             ECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccc
Confidence            777776666666666655  66666777766666655555554444      6666666666665555544322   445


Q ss_pred             cEEEeeccC---------CCCcccccccCC--CCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhh
Q 002435          314 YWLSLASND---------FSGELPASFGNL--RSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLV  382 (922)
Q Consensus       314 ~~L~L~~n~---------l~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  382 (922)
                      +.+.+..+.         +.+..+..+..+  ++|++|++++|.+.+..+..+..                         
T Consensus       234 ~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~-------------------------  288 (844)
T 3j0a_A          234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET-------------------------  288 (844)
T ss_dssp             SEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSS-------------------------
T ss_pred             cceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhc-------------------------
Confidence            555554222         111112222222  34444444444444444444444                         


Q ss_pred             ccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCC-cccccCCCCccEEECcCCCCCCCCCccccccCCCCcc
Q 002435          383 NFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEF-PNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFS  461 (922)
Q Consensus       383 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~l-p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~  461 (922)
                       +++|+.|++++|.++++.+..|..+++|++|++++|.++.+ |..+..+++|++|++++|++.+..+..+.  .+++|+
T Consensus       289 -l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~--~l~~L~  365 (844)
T 3j0a_A          289 -LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK--FLEKLQ  365 (844)
T ss_dssp             -CCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSC--SCCCCC
T ss_pred             -CCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhc--CCCCCC
Confidence             45555555555555554444455555555555555555433 34455555555555555555544444443  455555


Q ss_pred             EEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCcc
Q 002435          462 YLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNN  541 (922)
Q Consensus       462 ~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~  541 (922)
                      +|++++|.++++..       ...+..+++++|.++ .+|....+++.+++++|.+++.-.......+++|+.|++++|+
T Consensus       366 ~L~Ls~N~l~~i~~-------~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~  437 (844)
T 3j0a_A          366 TLDLRDNALTTIHF-------IPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR  437 (844)
T ss_dssp             EEEEETCCSCCCSS-------CCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC
T ss_pred             EEECCCCCCCcccC-------CCCcchhccCCCCcc-cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCc
Confidence            55555555554322       234456666666665 3344456788888888888864333333348999999999999


Q ss_pred             CCCCCCc-hhhhccCcccEEEcCCCccc-----CCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcC
Q 002435          542 LSGLLPQ-CLDNFSDHLSILDLQHNKFC-----GSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQI  615 (922)
Q Consensus       542 l~~~~p~-~l~~l~~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l  615 (922)
                      +++..+. .+..++ +|+.|++++|.++     +..+..|..+++|++|+|++|++++..|..|.++++|+.|+|++|++
T Consensus       438 l~~~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  516 (844)
T 3j0a_A          438 FSSCSGDQTPSENP-SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL  516 (844)
T ss_dssp             CCCCCSSSSSCSCT-TCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCC
T ss_pred             ccccccccccccCC-ccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCC
Confidence            9976544 233444 7999999999997     44556788999999999999999999999999999999999999999


Q ss_pred             ccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhcc
Q 002435          616 SGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCW  677 (922)
Q Consensus       616 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~  677 (922)
                      ++..|..+.  ++|++|+|++|++++.+|..+     ++|+.|++++|++.|.++..+|..|
T Consensus       517 ~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~-----~~L~~l~l~~Np~~C~c~~~~f~~~  571 (844)
T 3j0a_A          517 TVLSHNDLP--ANLEILDISRNQLLAPNPDVF-----VSLSVLDITHNKFICECELSTFINW  571 (844)
T ss_dssp             SSCCCCCCC--SCCCEEEEEEECCCCCCSCCC-----SSCCEEEEEEECCCCSSSCCSHHHH
T ss_pred             CccChhhhh--ccccEEECCCCcCCCCChhHh-----CCcCEEEecCCCcccccccHHHHHH
Confidence            988887776  899999999999999887653     5899999999999999987766554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-47  Score=454.43  Aligned_cols=496  Identities=21%  Similarity=0.222  Sum_probs=271.6

Q ss_pred             CCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCC
Q 002435          137 RLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSS  216 (922)
Q Consensus       137 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~  216 (922)
                      ++++|++++|.+.+..+..+.++++|++|++++|++..+.       +..+.++++|++|++++|.+++..+..++++++
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~-------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  101 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-------DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS  101 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEEC-------TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccC-------cccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence            4555555555555444445555555555555555432211       122334444444444444455545566677777


Q ss_pred             CCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCC-CcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCC----CE
Q 002435          217 LTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLG-ELPTSIGNLDCLKRLDISWNELSGELPASIGNLASL----EQ  291 (922)
Q Consensus       217 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~  291 (922)
                      |++|++++|++.+..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++..+..+..+++|    ++
T Consensus       102 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~  181 (570)
T 2z63_A          102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS  181 (570)
T ss_dssp             CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCE
T ss_pred             cccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhh
Confidence            7777777777765544456677777777777777665 356667777777777777777665555566666665    66


Q ss_pred             EEccCCCCCCCCcccccCCCCCcEEEeeccCCCC-cccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCC
Q 002435          292 LELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSG-ELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNN  370 (922)
Q Consensus       292 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~  370 (922)
                      |++++|.+.+..+..+... +|+.|++++|.... .++..+..++.++.+.+....+..        ...++        
T Consensus       182 L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~--------~~~l~--------  244 (570)
T 2z63_A          182 LDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN--------EGNLE--------  244 (570)
T ss_dssp             EECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC--------CSSCE--------
T ss_pred             cccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC--------chhhh--------
Confidence            6666666666555555444 56666666654321 233344444444444333221110        00111        


Q ss_pred             CcCccchhhhhhccC--CcceEeCcCc-cccccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCC
Q 002435          371 FSGPIDLDMFLVNFK--HLEHLSLSSN-RLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGK  447 (922)
Q Consensus       371 l~~~~~~~~~~~~l~--~L~~L~Ls~n-~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~  447 (922)
                         .++...+ ..++  .++.++++++ .+.+.                       +|..+..+++|++|++++|.+. .
T Consensus       245 ---~~~~~~~-~~l~~l~l~~l~l~~~~~~~~~-----------------------~~~~~~~l~~L~~L~l~~~~l~-~  296 (570)
T 2z63_A          245 ---KFDKSAL-EGLCNLTIEEFRLAYLDYYLDD-----------------------IIDLFNCLTNVSSFSLVSVTIE-R  296 (570)
T ss_dssp             ---ECCTTTT-GGGGGSEEEEEEEEETTEEESC-----------------------STTTTGGGTTCSEEEEESCEEC-S
T ss_pred             ---hcchhhh-ccccccchhhhhhhcchhhhhh-----------------------chhhhcCcCcccEEEecCccch-h
Confidence               0111111 1111  2334444444 33333                       3344444555555555555554 2


Q ss_pred             CCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhh
Q 002435          448 VPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICN  527 (922)
Q Consensus       448 ~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~  527 (922)
                      +|.++.  .+ +|++|++++|.+..                                                +|..   
T Consensus       297 l~~~~~--~~-~L~~L~l~~n~~~~------------------------------------------------l~~~---  322 (570)
T 2z63_A          297 VKDFSY--NF-GWQHLELVNCKFGQ------------------------------------------------FPTL---  322 (570)
T ss_dssp             CCBCCS--CC-CCSEEEEESCBCSS------------------------------------------------CCBC---
T ss_pred             hhhhhc--cC-CccEEeeccCcccc------------------------------------------------cCcc---
Confidence            333332  22 33333333332211                                                1110   


Q ss_pred             cCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCC--cccccCCCCccEEecCCCcccccCCccccCCCCC
Q 002435          528 SSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSI--PQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSL  605 (922)
Q Consensus       528 ~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  605 (922)
                      .+++|+.|++++|.+.+..+.  ..++ +|++|++++|++++..  |..+..+++|++|++++|++++..+. +..+++|
T Consensus       323 ~l~~L~~L~l~~n~~~~~~~~--~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L  398 (570)
T 2z63_A          323 KLKSLKRLTFTSNKGGNAFSE--VDLP-SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQL  398 (570)
T ss_dssp             BCSSCCEEEEESCBSCCBCCC--CBCT-TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTC
T ss_pred             cccccCEEeCcCCcccccccc--ccCC-CCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCC
Confidence            033444444444444433322  2222 3444444444443322  33344444444444444444433222 4444444


Q ss_pred             cEEECCCCcCccCcc-hhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecc
Q 002435          606 KFLDLGNNQISGTFP-SWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVN  684 (922)
Q Consensus       606 ~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~  684 (922)
                      ++|++++|++.+..| ..+.                          .+++|+.|++++|++.+..|.. +..        
T Consensus       399 ~~L~l~~n~l~~~~~~~~~~--------------------------~l~~L~~L~l~~n~l~~~~~~~-~~~--------  443 (570)
T 2z63_A          399 EHLDFQHSNLKQMSEFSVFL--------------------------SLRNLIYLDISHTHTRVAFNGI-FNG--------  443 (570)
T ss_dssp             CEEECTTSEEESCTTSCTTT--------------------------TCTTCCEEECTTSCCEECCTTT-TTT--------
T ss_pred             CEEEccCCccccccchhhhh--------------------------cCCCCCEEeCcCCcccccchhh-hhc--------
Confidence            444444444443332 2233                          4455555555555554333321 110        


Q ss_pred             cccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEecccccc-ccCcccccccCCCCEEeCCCc
Q 002435          685 TSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFD-GEIPTSIANLKGLQVLSLANN  763 (922)
Q Consensus       685 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~-g~ip~~~~~l~~L~~L~Ls~N  763 (922)
                                                                 .+.|+.|+|++|.++ +.+|..++.+++|++|+|++|
T Consensus       444 -------------------------------------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n  480 (570)
T 2z63_A          444 -------------------------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC  480 (570)
T ss_dssp             -------------------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             -------------------------------------------CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence                                                       234667777777776 578888999999999999999


Q ss_pred             cccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCCCC
Q 002435          764 SLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQG  820 (922)
Q Consensus       764 ~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~~  820 (922)
                      ++++.+|..|+++++|+.|+|++|++++.+|..+.++++|+.|++++|+++|.+|..
T Consensus       481 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          481 QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  537 (570)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             ccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence            999999999999999999999999999999999999999999999999999999864

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=9.4e-47  Score=444.90  Aligned_cols=490  Identities=20%  Similarity=0.196  Sum_probs=312.9

Q ss_pred             EcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCC
Q 002435          197 ALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELS  276 (922)
Q Consensus       197 ~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  276 (922)
                      +.+++.++. +|..+.  ++|++|++++|++++..|..+.++++|++|++++|++++..|.+|+++++|++|++++|.++
T Consensus        11 ~~~~~~l~~-ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~   87 (549)
T 2z81_A           11 DGRSRSFTS-IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS   87 (549)
T ss_dssp             ECTTSCCSS-CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             ECCCCcccc-ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence            344444443 343332  56777777777777666777777777777777777777766677777777777777777777


Q ss_pred             CCchhhhhCCCCCCEEEccCCCCCC-CCcccccCCCCCcEEEeeccCCCCccc-ccccCCCCCceEecCCCccCccCchh
Q 002435          277 GELPASIGNLASLEQLELSLNRFRG-KTPHSMGNFTRLYWLSLASNDFSGELP-ASFGNLRSLEGLDISECKFSSQIPSS  354 (922)
Q Consensus       277 ~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~~  354 (922)
                      +..|..++++++|++|++++|.+++ ..|..++.+++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..
T Consensus        88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  167 (549)
T 2z81_A           88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS  167 (549)
T ss_dssp             SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred             ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence            6666667777777777777777775 345667777788888888777444444 46777778888888888887777777


Q ss_pred             hcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcccccCCCCc
Q 002435          355 LRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYL  434 (922)
Q Consensus       355 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L  434 (922)
                      +..+++|++|+++.|.+. .++.. +...+++|++|++++|++++......                    .....+++|
T Consensus       168 l~~l~~L~~L~l~~n~~~-~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~--------------------~~~~~~~~L  225 (549)
T 2z81_A          168 LKSIRDIHHLTLHLSESA-FLLEI-FADILSSVRYLELRDTNLARFQFSPL--------------------PVDEVSSPM  225 (549)
T ss_dssp             TTTCSEEEEEEEECSBST-THHHH-HHHSTTTBSEEEEESCBCTTCCCCCC--------------------SSCCCCCCC
T ss_pred             hhccccCceEecccCccc-ccchh-hHhhcccccEEEccCCcccccccccc--------------------chhhhhhcc
Confidence            777788888888777764 33322 22557777777777777766421110                    011223444


Q ss_pred             cEEECcCCCCCCCCCccccc--cCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeec
Q 002435          435 EVLDLSCNKIHGKVPKWLIE--PSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLV  512 (922)
Q Consensus       435 ~~L~Ls~n~l~~~~p~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~l  512 (922)
                      +.|++++|.+++..+..+..  ..+++|+.+++++|.+.+........                 ......         
T Consensus       226 ~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~-----------------~~~~~~---------  279 (549)
T 2z81_A          226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE-----------------SDVVSE---------  279 (549)
T ss_dssp             CEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCT-----------------TTCCCC---------
T ss_pred             cceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccc-----------------hhhhhh---------
Confidence            55555555444332222110  13345555555555444321110000                 000011         


Q ss_pred             cCCcccCcCChhhhhcCCccceEEccCccCCCC-----CCchhhhccCcccEEEcCCCcccCCCcccc-cCCCCccEEec
Q 002435          513 SNNSLTGKIPFWICNSSNSLEILDLSYNNLSGL-----LPQCLDNFSDHLSILDLQHNKFCGSIPQTF-LSGRSLMMIDL  586 (922)
Q Consensus       513 s~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~-----~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L  586 (922)
                                      +++|+.|+++++.+...     ++..+.... +|+.|++++|+++ .+|..+ ..+++|++|++
T Consensus       280 ----------------l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~L  341 (549)
T 2z81_A          280 ----------------LGKVETVTIRRLHIPQFYLFYDLSTVYSLLE-KVKRITVENSKVF-LVPCSFSQHLKSLEFLDL  341 (549)
T ss_dssp             ----------------CTTCCEEEEESCBCSCGGGSCCCCHHHHHST-TCCEEEEESSCCC-CCCHHHHHHCTTCCEEEC
T ss_pred             ----------------hcccccccccccccchhhhcccchhhhhhcc-cceEEEeccCccc-cCCHHHHhcCccccEEEc
Confidence                            23344444444433211     111122222 5666666666665 344433 45666777777


Q ss_pred             CCCcccccCC---ccccCCCCCcEEECCCCcCccCcc--hhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEcc
Q 002435          587 SDNLLQGRIP---RSLVNCSSLKFLDLGNNQISGTFP--SWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLS  661 (922)
Q Consensus       587 s~N~l~~~~~---~~l~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs  661 (922)
                      ++|++++.+|   ..+..+++|++|++++|++++..+  ..+..+++|++|++++|++++ +|...  ..+++|+.|+++
T Consensus       342 s~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~--~~~~~L~~L~Ls  418 (549)
T 2z81_A          342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSC--QWPEKMRFLNLS  418 (549)
T ss_dssp             CSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCC--CCCTTCCEEECT
T ss_pred             cCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhh--cccccccEEECC
Confidence            7777666543   235667777777777777765432  456777777777777777774 34333  456778888888


Q ss_pred             CCcCCCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccc
Q 002435          662 NNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRF  741 (922)
Q Consensus       662 ~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l  741 (922)
                      +|+++ .+|..                                                      +++.|+.|||++|++
T Consensus       419 ~N~l~-~l~~~------------------------------------------------------~~~~L~~L~Ls~N~l  443 (549)
T 2z81_A          419 STGIR-VVKTC------------------------------------------------------IPQTLEVLDVSNNNL  443 (549)
T ss_dssp             TSCCS-CCCTT------------------------------------------------------SCTTCSEEECCSSCC
T ss_pred             CCCcc-cccch------------------------------------------------------hcCCceEEECCCCCh
Confidence            88776 22311                                                      124578889999998


Q ss_pred             cccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCCC
Q 002435          742 DGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQ  819 (922)
Q Consensus       742 ~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~  819 (922)
                      ++.+    +.+++|++|||++|+++ .+|. .+.+++|++|||++|++++.+|..+.++++|++|++++|+++|.+|.
T Consensus       444 ~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  515 (549)
T 2z81_A          444 DSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  515 (549)
T ss_dssp             SCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred             hhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence            8753    57889999999999998 5676 57899999999999999999999999999999999999999998884

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.5e-46  Score=443.13  Aligned_cols=200  Identities=21%  Similarity=0.240  Sum_probs=157.3

Q ss_pred             CCccceEEccCccCCCCCCchh-hhccCcccEEEcCCCcccCCCc---ccccCCCCccEEecCCCcccccCC--ccccCC
Q 002435          529 SNSLEILDLSYNNLSGLLPQCL-DNFSDHLSILDLQHNKFCGSIP---QTFLSGRSLMMIDLSDNLLQGRIP--RSLVNC  602 (922)
Q Consensus       529 ~~~L~~L~Ls~N~l~~~~p~~l-~~l~~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~~--~~l~~l  602 (922)
                      .++|+.|++++|.++ .+|..+ ..++ +|++|++++|++++.+|   ..++.+++|++|++++|++++..+  ..+..+
T Consensus       309 ~~~L~~L~l~~n~l~-~ip~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l  386 (549)
T 2z81_A          309 LEKVKRITVENSKVF-LVPCSFSQHLK-SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL  386 (549)
T ss_dssp             STTCCEEEEESSCCC-CCCHHHHHHCT-TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGC
T ss_pred             cccceEEEeccCccc-cCCHHHHhcCc-cccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcC
Confidence            456777777777776 556555 3455 68888888888876654   336778888888888888876543  457888


Q ss_pred             CCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhcccccee
Q 002435          603 SSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQV  682 (922)
Q Consensus       603 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~  682 (922)
                      ++|++|++++|+++ .+|..+..+++|++|++++|++++.. ..    -.++|+.||+++|++++.++            
T Consensus       387 ~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~-~~----~~~~L~~L~Ls~N~l~~~~~------------  448 (549)
T 2z81_A          387 KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVK-TC----IPQTLEVLDVSNNNLDSFSL------------  448 (549)
T ss_dssp             TTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCC-TT----SCTTCSEEECCSSCCSCCCC------------
T ss_pred             CCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccccc-ch----hcCCceEEECCCCChhhhcc------------
Confidence            88888888888888 56778888888999999998887542 21    13689999999998875321            


Q ss_pred             cccccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCC
Q 002435          683 VNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLAN  762 (922)
Q Consensus       683 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~  762 (922)
                                                                  ..+.|+.|||++|+|+ .+|. .+.+++|++|||++
T Consensus       449 --------------------------------------------~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~  482 (549)
T 2z81_A          449 --------------------------------------------FLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISR  482 (549)
T ss_dssp             --------------------------------------------CCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCS
T ss_pred             --------------------------------------------cCChhcEEECCCCccC-cCCC-cccCccCCEEecCC
Confidence                                                        0245889999999998 6776 57799999999999


Q ss_pred             ccccccCCccccCCCCCCEEeCCCCcCcccCc
Q 002435          763 NSLHGHILSCLGNLTGLESLDLSNNKFSGQIP  794 (922)
Q Consensus       763 N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip  794 (922)
                      |++++.+|..++++++|+.|+|++|.+++..|
T Consensus       483 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          483 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             SCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            99999999999999999999999999999877

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-45  Score=437.70  Aligned_cols=514  Identities=22%  Similarity=0.215  Sum_probs=355.3

Q ss_pred             CEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccC
Q 002435          194 KELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWN  273 (922)
Q Consensus       194 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n  273 (922)
                      +.++.++..++. +|..+.  +++++|++++|++++..+..|.++++|++|++++|.+++..+..|+++++|++|++++|
T Consensus        10 ~~~~c~~~~l~~-ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n   86 (570)
T 2z63_A           10 ITYQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN   86 (570)
T ss_dssp             TEEECCSSCCSS-CCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             cEEEeCCCCccc-cCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence            345555544443 343332  46777777777777666666777777777777777776666666777777777777777


Q ss_pred             CCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCC-cccccccCCCCCceEecCCCccCccCc
Q 002435          274 ELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSG-ELPASFGNLRSLEGLDISECKFSSQIP  352 (922)
Q Consensus       274 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~  352 (922)
                      .+++..|..|.++++|++|++++|.+++..+..++.+++|++|++++|.+.+ .+|..+.++++|++|++++|++++..+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~  166 (570)
T 2z63_A           87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  166 (570)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG
T ss_pred             cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecH
Confidence            7765555667777777777777777665555456666666666666666654 345666666666666666666665555


Q ss_pred             hhhcCCCCc----cEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCC--CCcc
Q 002435          353 SSLRNLAQL----KFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLN--EFPN  426 (922)
Q Consensus       353 ~~l~~l~~L----~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~--~lp~  426 (922)
                      ..++.+++|    +.+++++|.+.                          ++.+..|... +|+.+++++|...  .++.
T Consensus       167 ~~~~~l~~L~~~~~~L~l~~n~l~--------------------------~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~  219 (570)
T 2z63_A          167 TDLRVLHQMPLLNLSLDLSLNPMN--------------------------FIQPGAFKEI-RLHKLTLRNNFDSLNVMKT  219 (570)
T ss_dssp             GGGHHHHTCTTCCCEEECTTCCCC--------------------------EECTTTTTTC-EEEEEEEESCCSCTTHHHH
T ss_pred             HHccchhccchhhhhcccCCCCce--------------------------ecCHHHhccC-cceeEecccccccccchhh
Confidence            555544444    45555555544                          4433333222 3444444443222  2333


Q ss_pred             cccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCC
Q 002435          427 FLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQ  506 (922)
Q Consensus       427 ~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~  506 (922)
                      .+..++.++.+.+....+..          ...++  .+....+.+..                             ...
T Consensus       220 ~~~~l~~l~~~~l~~~~~~~----------~~~l~--~~~~~~~~~l~-----------------------------~l~  258 (570)
T 2z63_A          220 CIQGLAGLEVHRLVLGEFRN----------EGNLE--KFDKSALEGLC-----------------------------NLT  258 (570)
T ss_dssp             HHHTTTTCEEEEEEEEECCC----------CSSCE--ECCTTTTGGGG-----------------------------GSE
T ss_pred             hhcCccccceeeeccccccC----------chhhh--hcchhhhcccc-----------------------------ccc
Confidence            44444444444433222110          00000  00000000000                             012


Q ss_pred             CceeeccCC-cccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEe
Q 002435          507 TKHYLVSNN-SLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMID  585 (922)
Q Consensus       507 l~~L~ls~n-~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  585 (922)
                      ++.+.++++ .+.+.+|..+.. +++|+.|++++|.++ .+|..+..+  +|++|++++|.++ .+|.  ..+++|+.|+
T Consensus       259 l~~l~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~l~-~l~~~~~~~--~L~~L~l~~n~~~-~l~~--~~l~~L~~L~  331 (570)
T 2z63_A          259 IEEFRLAYLDYYLDDIIDLFNC-LTNVSSFSLVSVTIE-RVKDFSYNF--GWQHLELVNCKFG-QFPT--LKLKSLKRLT  331 (570)
T ss_dssp             EEEEEEEETTEEESCSTTTTGG-GTTCSEEEEESCEEC-SCCBCCSCC--CCSEEEEESCBCS-SCCB--CBCSSCCEEE
T ss_pred             hhhhhhhcchhhhhhchhhhcC-cCcccEEEecCccch-hhhhhhccC--CccEEeeccCccc-ccCc--ccccccCEEe
Confidence            344555555 556666666665 889999999999998 577777776  6999999999998 5554  4788999999


Q ss_pred             cCCCcccccCCccccCCCCCcEEECCCCcCccCc--chhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCC
Q 002435          586 LSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTF--PSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNN  663 (922)
Q Consensus       586 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N  663 (922)
                      +++|.+.+..+.  ..+++|++|++++|++++..  |..+..+++|++|++++|++.+..+.   +..+++|+.|++++|
T Consensus       332 l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~l~~L~~L~l~~n  406 (570)
T 2z63_A          332 FTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN---FLGLEQLEHLDFQHS  406 (570)
T ss_dssp             EESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE---EETCTTCCEEECTTS
T ss_pred             CcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc---ccccCCCCEEEccCC
Confidence            999999877665  78899999999999998765  78899999999999999999887554   367899999999999


Q ss_pred             cCCCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccc
Q 002435          664 RFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDG  743 (922)
Q Consensus       664 ~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g  743 (922)
                      .+.+..|...+..                                                   .+.|+.|++++|.+++
T Consensus       407 ~l~~~~~~~~~~~---------------------------------------------------l~~L~~L~l~~n~l~~  435 (570)
T 2z63_A          407 NLKQMSEFSVFLS---------------------------------------------------LRNLIYLDISHTHTRV  435 (570)
T ss_dssp             EEESCTTSCTTTT---------------------------------------------------CTTCCEEECTTSCCEE
T ss_pred             ccccccchhhhhc---------------------------------------------------CCCCCEEeCcCCcccc
Confidence            9886555332211                                                   3568899999999999


Q ss_pred             cCcccccccCCCCEEeCCCcccc-ccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCCCC-C
Q 002435          744 EIPTSIANLKGLQVLSLANNSLH-GHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQG-N  821 (922)
Q Consensus       744 ~ip~~~~~l~~L~~L~Ls~N~l~-~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~~-~  821 (922)
                      .+|..+..+++|++|+|++|.++ +.+|..++.+++|++|+|++|++++.+|..+.++++|++|++++|++++.+|.. .
T Consensus       436 ~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  515 (570)
T 2z63_A          436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD  515 (570)
T ss_dssp             CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             cchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhh
Confidence            99999999999999999999998 689999999999999999999999999999999999999999999999987753 2


Q ss_pred             CCCCCCccccCCCcCCCCCC
Q 002435          822 QFPTFDKTSFNGNLGLCGKP  841 (922)
Q Consensus       822 ~~~~~~~~s~~gn~~lcg~~  841 (922)
                      .+..+....+.+|+.-|.+|
T Consensus       516 ~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          516 RLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             TCTTCCEEECCSSCBCCCTT
T ss_pred             cccCCcEEEecCCcccCCCc
Confidence            34455556677777766544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.2e-46  Score=448.97  Aligned_cols=267  Identities=16%  Similarity=0.186  Sum_probs=133.6

Q ss_pred             CCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcC------CC------CCchhccCCCCCCEEeccCccC
Q 002435          160 SNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTI------SS------PIPHSLANLSSLTLLSLSGCEL  227 (922)
Q Consensus       160 ~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~------~~------~~~~~l~~l~~L~~L~Ls~n~l  227 (922)
                      .+++.|+|+++.+.       +.+|..++++++|++|+|++|.+      .+      .+|...  +..|+ ++++++.+
T Consensus        81 ~~V~~L~L~~~~l~-------g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l  150 (636)
T 4eco_A           81 GRVTGLSLEGFGAS-------GRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFV  150 (636)
T ss_dssp             CCEEEEECTTSCCE-------EEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHT
T ss_pred             CCEEEEEecCcccC-------CcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhh
Confidence            46778888887632       44556677777777777777754      11      223322  34455 56666666


Q ss_pred             CccCccccCC-CCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcc--cCCCCCCchhhhhCCCCCCEEEccCCCCCCC--
Q 002435          228 RGRIPSLLGN-LTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDIS--WNELSGELPASIGNLASLEQLELSLNRFRGK--  302 (922)
Q Consensus       228 ~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~--~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--  302 (922)
                      .+.+|..+.. +..+..+++....+..      .....++.+.+.  .|++++ +|..++++++|++|+|++|.+++.  
T Consensus       151 ~~~~~~~~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~  223 (636)
T 4eco_A          151 DYDPREDFSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENI  223 (636)
T ss_dssp             CCCGGGGSCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGB
T ss_pred             ccCchhhHHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccc
Confidence            6555554441 1112222222111110      001111111121  345554 555566666666666666665553  


Q ss_pred             ---------------Cccccc--CCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCc-cCc-cCchhhcCC-----
Q 002435          303 ---------------TPHSMG--NFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECK-FSS-QIPSSLRNL-----  358 (922)
Q Consensus       303 ---------------~~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~~~~l~~l-----  358 (922)
                                     +|..++  ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.+     
T Consensus       224 ~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~  303 (636)
T 4eco_A          224 CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPV  303 (636)
T ss_dssp             SSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGG
T ss_pred             cccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhcccc
Confidence                           555555  56666666666666555556556666666666666665 555 555555444     


Q ss_pred             -CCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcccccCCCC-ccE
Q 002435          359 -AQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHY-LEV  436 (922)
Q Consensus       359 -~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~-L~~  436 (922)
                       ++|++|++++|.++ .+|....+..+++|++|++++|.+++..+ .+..+++|+.|++++|.++.+|..+..+++ |++
T Consensus       304 l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~  381 (636)
T 4eco_A          304 GEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVEN  381 (636)
T ss_dssp             GGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCE
T ss_pred             CCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcE
Confidence             55555555555555 34431112445555555555555542222 333344444444444444444444444554 555


Q ss_pred             EECcCCCCC
Q 002435          437 LDLSCNKIH  445 (922)
Q Consensus       437 L~Ls~n~l~  445 (922)
                      |++++|+++
T Consensus       382 L~Ls~N~l~  390 (636)
T 4eco_A          382 LSFAHNKLK  390 (636)
T ss_dssp             EECCSSCCS
T ss_pred             EEccCCcCc
Confidence            555555554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=4.8e-44  Score=432.43  Aligned_cols=390  Identities=20%  Similarity=0.242  Sum_probs=210.6

Q ss_pred             CCCCCCchhhhhCCCCCCEEEccCCCCCC-----------------CCccccc--CCCCCcEEEeeccCCCCcccccccC
Q 002435          273 NELSGELPASIGNLASLEQLELSLNRFRG-----------------KTPHSMG--NFTRLYWLSLASNDFSGELPASFGN  333 (922)
Q Consensus       273 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-----------------~~~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~  333 (922)
                      |.+++ +|..++++++|++|+|++|.+++                 .+|..++  ++++|+.|+|++|.+.+.+|..+.+
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~  513 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD  513 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence            44554 56666666666666666666665                 2555544  5666666666666655555655666


Q ss_pred             CCCCceEecCCCc-cCc-cCchhhcCCC-------CccEEEccCCCCcCccchhhhhhccCCcceEeCcCcccccccccc
Q 002435          334 LRSLEGLDISECK-FSS-QIPSSLRNLA-------QLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAI  404 (922)
Q Consensus       334 l~~L~~L~Ls~n~-l~~-~~~~~l~~l~-------~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  404 (922)
                      +++|++|++++|+ +++ .+|..++.++       +|+.|++++|.++ .+|....+..+++|++|++++|.++.++  .
T Consensus       514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~  590 (876)
T 4ecn_A          514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE--A  590 (876)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC--C
T ss_pred             CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch--h
Confidence            6666666666665 555 4555444333       5555555555555 4443111145555555555555555333  4


Q ss_pred             ccCCCCccEEEecCCCCCCCcccccCCCC-ccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCC
Q 002435          405 FNTSQKFNFVGLRSCNLNEFPNFLKNQHY-LEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRN  483 (922)
Q Consensus       405 ~~~~~~L~~L~L~~~~l~~lp~~l~~~~~-L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  483 (922)
                      +..+++|+.|++++|.++.+|..+..+++ |++|++++|+++ .+|..+.....++|+.|++++|.+.+..+.       
T Consensus       591 ~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~-------  662 (876)
T 4ecn_A          591 FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN-------  662 (876)
T ss_dssp             CCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSS-------
T ss_pred             hcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcccc-------
Confidence            44455555555555555555544444444 555555555544 344333211112233333333333221110       


Q ss_pred             CCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhh-cCCccceEEccCccCCCCCCchhhhccCcccEEEc
Q 002435          484 YDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICN-SSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDL  562 (922)
Q Consensus       484 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~-~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~L  562 (922)
                                         .                  +..+.. .+++|+.|++++|.++ .+|..+            
T Consensus       663 -------------------l------------------~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~------------  692 (876)
T 4ecn_A          663 -------------------I------------------SCSMDDYKGINASTVTLSYNEIQ-KFPTEL------------  692 (876)
T ss_dssp             -------------------C------------------SSCTTTCCCCCEEEEECCSSCCC-SCCHHH------------
T ss_pred             -------------------c------------------hhhhccccCCCcCEEEccCCcCC-ccCHHH------------
Confidence                               0                  000000 0224444444444444 233322            


Q ss_pred             CCCcccCCCcccccCCCCccEEecCCCcccccCCcc-cc-------CCCCCcEEECCCCcCccCcchhhc--CCCCCCEE
Q 002435          563 QHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRS-LV-------NCSSLKFLDLGNNQISGTFPSWLG--TLRELNVL  632 (922)
Q Consensus       563 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~-l~-------~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L  632 (922)
                                  +..+++|+.|+|++|+++ .+|.. +.       ++++|+.|+|++|+++ .+|..+.  .+++|+.|
T Consensus       693 ------------~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L  758 (876)
T 4ecn_A          693 ------------FATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNM  758 (876)
T ss_dssp             ------------HHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEE
T ss_pred             ------------HccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEE
Confidence                        223444444444444444 22221 11       2236666666666666 4555554  56666666


Q ss_pred             EcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccccccccccccchhccccccceeeee
Q 002435          633 ILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYS  712 (922)
Q Consensus       633 ~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  712 (922)
                      +|++|++++ +|...  ..+++|+.|+|++|+                                                
T Consensus       759 ~Ls~N~L~~-lp~~l--~~L~~L~~L~Ls~N~------------------------------------------------  787 (876)
T 4ecn_A          759 DVSYNCFSS-FPTQP--LNSSQLKAFGIRHQR------------------------------------------------  787 (876)
T ss_dssp             ECCSSCCSS-CCCGG--GGCTTCCEEECCCCB------------------------------------------------
T ss_pred             EeCCCCCCc-cchhh--hcCCCCCEEECCCCC------------------------------------------------
Confidence            666666655 33332  345666666666654                                                


Q ss_pred             eeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCccc
Q 002435          713 LTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQ  792 (922)
Q Consensus       713 ~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~  792 (922)
                                            ++++|++.+.+|..|+++++|+.|+|++|++ +.+|..+.  ++|+.|||++|++...
T Consensus       788 ----------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i  842 (876)
T 4ecn_A          788 ----------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISI  842 (876)
T ss_dssp             ----------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred             ----------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence                                  1345677778888888889999999999999 77888766  5899999999988877


Q ss_pred             CcccccCCCCCCeEeccCCccc
Q 002435          793 IPQQLVDLTFLEFFNVSNNNLT  814 (922)
Q Consensus       793 ip~~l~~L~~L~~L~ls~N~ls  814 (922)
                      .+..+.....+..+.+++|++.
T Consensus       843 ~~~~~~~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          843 DVTSVCPYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             ECGGGHHHHHTTCCEEECCTTS
T ss_pred             ChHHccccccchheeecCCCcc
Confidence            7777766666677777777543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.6e-43  Score=422.23  Aligned_cols=518  Identities=21%  Similarity=0.220  Sum_probs=272.0

Q ss_pred             CCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCC
Q 002435          160 SNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLT  239 (922)
Q Consensus       160 ~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~  239 (922)
                      +++++|||++|+|+.+..       ..|.++++|++|+|++|.+++..+.+|.++++|++|+|++|++++..+..|.+++
T Consensus        52 ~~~~~LdLs~N~i~~l~~-------~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~  124 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGS-------YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS  124 (635)
T ss_dssp             TTCCEEECTTSCCCEECT-------TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred             cCCCEEEeeCCCCCCCCH-------HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence            468888888887643321       3455566666666666666655555566666666666666666554445556666


Q ss_pred             CCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCC-CchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEe
Q 002435          240 KLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSG-ELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSL  318 (922)
Q Consensus       240 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  318 (922)
                      +|++|+|++|++++..+..|+++++|++|++++|.+++ .+|..+..+++|++|++++|++++..+..+..+.+++.   
T Consensus       125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~---  201 (635)
T 4g8a_A          125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL---  201 (635)
T ss_dssp             TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT---
T ss_pred             CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhh---
Confidence            66666666666655544555666666666666665543 23455555555666666655555554444443332220   


Q ss_pred             eccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccc-
Q 002435          319 ASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRL-  397 (922)
Q Consensus       319 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l-  397 (922)
                                       ....++++.|.+....+.. .....++.+++.+|.....+....+ ..+..++...+..+.. 
T Consensus       202 -----------------~~~~~~ls~n~l~~i~~~~-~~~~~~~~l~l~~n~~~~~~~~~~~-~~l~~l~~~~l~~~~~~  262 (635)
T 4g8a_A          202 -----------------LNLSLDLSLNPMNFIQPGA-FKEIRLHKLTLRNNFDSLNVMKTCI-QGLAGLEVHRLVLGEFR  262 (635)
T ss_dssp             -----------------CCCEEECTTCCCCEECTTT-TTTCEEEEEEEESCCSSHHHHHHHH-HTTTTCEEEEEEEECCT
T ss_pred             -----------------hhhhhhcccCcccccCccc-ccchhhhhhhhhcccccccccchhh-cCCcccccccccccccc
Confidence                             1123444444444322222 2222344444444433322222221 3333333333322211 


Q ss_pred             -----cccccccccCCCCccEEEecCCCCC----CCcccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCC
Q 002435          398 -----SLFTKAIFNTSQKFNFVGLRSCNLN----EFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHN  468 (922)
Q Consensus       398 -----~~~~~~~~~~~~~L~~L~L~~~~l~----~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n  468 (922)
                           .......+.....+....+..+...    .++..+.....++.+++.++.+....+.  .  ....++.|++.+|
T Consensus       263 ~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~--~~~~L~~L~l~~~  338 (635)
T 4g8a_A          263 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDF--S--YNFGWQHLELVNC  338 (635)
T ss_dssp             TSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGG--G--SCCCCSEEEEESC
T ss_pred             cccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccccc--c--cchhhhhhhcccc
Confidence                 1111111222222222222222111    1111222233344444444333221110  0  1222333333322


Q ss_pred             ccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCc
Q 002435          469 FLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQ  548 (922)
Q Consensus       469 ~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~  548 (922)
                                                .+.+..+..                         +..|+.++++.|.+....+ 
T Consensus       339 --------------------------~~~~~~~~~-------------------------l~~L~~l~l~~n~~~~~~~-  366 (635)
T 4g8a_A          339 --------------------------KFGQFPTLK-------------------------LKSLKRLTFTSNKGGNAFS-  366 (635)
T ss_dssp             --------------------------EESSCCCCB-------------------------CTTCCEEEEESCCSCCBCC-
T ss_pred             --------------------------cccCcCccc-------------------------chhhhhcccccccCCCCcc-
Confidence                                      222222222                         2334444444444432211 


Q ss_pred             hhhhccCcccEEEcCCCccc--CCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcc-hhhcC
Q 002435          549 CLDNFSDHLSILDLQHNKFC--GSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFP-SWLGT  625 (922)
Q Consensus       549 ~l~~l~~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~  625 (922)
                       ...++ +|+.|++++|.+.  +..+..+..+.+|+.++++.|.+.. .+..+..+++|+.+++++|+.....+ ..|..
T Consensus       367 -~~~l~-~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~  443 (635)
T 4g8a_A          367 -EVDLP-SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS  443 (635)
T ss_dssp             -CCBCT-TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTT
T ss_pred             -ccccc-ccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccc
Confidence             12233 4555555555543  2233444455556666666665553 23345556666666666655544333 34556


Q ss_pred             CCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccccccccccccchhccccc
Q 002435          626 LRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAA  705 (922)
Q Consensus       626 l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  705 (922)
                      +++++.++++.|++.+..+...  ..++.|+.|++++|.+...++...|.                              
T Consensus       444 l~~l~~l~ls~n~l~~~~~~~~--~~~~~L~~L~Ls~N~~~~~~~~~~~~------------------------------  491 (635)
T 4g8a_A          444 LRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDIFT------------------------------  491 (635)
T ss_dssp             CTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSCCT------------------------------
T ss_pred             cccccccccccccccccccccc--ccchhhhhhhhhhcccccccCchhhh------------------------------
Confidence            6666666666666665554433  44566666666666543221111111                              


Q ss_pred             cceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCC
Q 002435          706 LGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLS  785 (922)
Q Consensus       706 l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls  785 (922)
                                           ..+.|+.|||++|+|++.+|..|+++++|++|+|++|+|++.+|..|+++++|++|||+
T Consensus       492 ---------------------~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls  550 (635)
T 4g8a_A          492 ---------------------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS  550 (635)
T ss_dssp             ---------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECT
T ss_pred             ---------------------hccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECC
Confidence                                 13457788888888888888889999999999999999998888889999999999999


Q ss_pred             CCcCcccCcccccCC-CCCCeEeccCCccccCCC
Q 002435          786 NNKFSGQIPQQLVDL-TFLEFFNVSNNNLTGPIP  818 (922)
Q Consensus       786 ~N~l~g~ip~~l~~L-~~L~~L~ls~N~lsg~iP  818 (922)
                      +|+|++.+|..+..+ ++|++|++++|++++...
T Consensus       551 ~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          551 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             TSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             CCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            999999999988888 689999999998887554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.1e-44  Score=421.64  Aligned_cols=459  Identities=18%  Similarity=0.176  Sum_probs=288.5

Q ss_pred             CEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccC
Q 002435          194 KELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWN  273 (922)
Q Consensus       194 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n  273 (922)
                      ++|++++|.++. +|..+.  ++|++|++++|.+.+..|..+.++++|++|++++|++++..|+.|+++++|++|++++|
T Consensus         3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            578888888874 666555  78888888888888777778888888888888888888777888888888888888888


Q ss_pred             CCCCCchhhhhCCCCCCEEEccCCCCCC-CCcccccCCCCCcEEEeeccCCCCcccccccCCCCC--ceEecCCCcc--C
Q 002435          274 ELSGELPASIGNLASLEQLELSLNRFRG-KTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSL--EGLDISECKF--S  348 (922)
Q Consensus       274 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~Ls~n~l--~  348 (922)
                      +++ .+|..  .+++|++|++++|.+++ ..|..++.+++|++|++++|.+++   ..+..+++|  ++|++++|.+  .
T Consensus        80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~  153 (520)
T 2z7x_B           80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE  153 (520)
T ss_dssp             CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred             cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence            888 56665  78888888888888887 467788888888888888888875   345666677  8888888888  6


Q ss_pred             ccCchhhcCCC-CccEEEccCCCCcCccchhhhhhccCCcceEeCcCcc-------ccccccccccCCCCccEEEecCCC
Q 002435          349 SQIPSSLRNLA-QLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNR-------LSLFTKAIFNTSQKFNFVGLRSCN  420 (922)
Q Consensus       349 ~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~-------l~~~~~~~~~~~~~L~~L~L~~~~  420 (922)
                      +..|..+..+. ....+++++|.+.+.++...+ ..+++|+.+++++|.       +.+..+                  
T Consensus       154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~------------------  214 (520)
T 2z7x_B          154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSV-KTVANLELSNIKCVLEDNKCSYFLSILA------------------  214 (520)
T ss_dssp             SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCC-TTCSEEEECCEEECCSTTTTHHHHHHHH------------------
T ss_pred             ccccccccccccceEEEEeccCcchhhhhhhhh-hcccceeeccccccccccccceeecchh------------------
Confidence            66676666654 233556667766655554333 455666666666554       211111                  


Q ss_pred             CCCCcccccCCCCccEEECcCCCCCCCCCccccc-cCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCC
Q 002435          421 LNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIE-PSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGP  499 (922)
Q Consensus       421 l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~  499 (922)
                            .+..+++|+.|++++|.+.+..+..+.. ...+                                         
T Consensus       215 ------~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~-----------------------------------------  247 (520)
T 2z7x_B          215 ------KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT-----------------------------------------  247 (520)
T ss_dssp             ------GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTS-----------------------------------------
T ss_pred             ------hhccccchhhccccccccCHHHHHHHHHHhhhC-----------------------------------------
Confidence                  2233344444444444333211111000 0011                                         


Q ss_pred             CCCCCCCCceeeccCCcccCcCChhhh----hcCCccceEEccCccCCCCCC-chhhhc---cCcccEEEcCCCcccCCC
Q 002435          500 LPVPPPQTKHYLVSNNSLTGKIPFWIC----NSSNSLEILDLSYNNLSGLLP-QCLDNF---SDHLSILDLQHNKFCGSI  571 (922)
Q Consensus       500 ~~~~~~~l~~L~ls~n~l~~~ip~~~~----~~~~~L~~L~Ls~N~l~~~~p-~~l~~l---~~~L~~L~Ls~N~l~~~~  571 (922)
                            +++.+++++|.++|.+|..++    ..+++|+.+++++|.+  .+| ..+..+   . +|+.|++++|.+.+..
T Consensus       248 ------~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~-~L~~L~l~~n~l~~~~  318 (520)
T 2z7x_B          248 ------TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNM-NIKNFTVSGTRMVHML  318 (520)
T ss_dssp             ------SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTC-CCSEEEEESSCCCCCC
T ss_pred             ------cccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccC-ceeEEEcCCCcccccc
Confidence                  223333333333333333331    1256677777777776  344 344333   2 4666777766665322


Q ss_pred             cccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCcc--CcchhhcCCCCCCEEEcCCCcccccCCCCCCC
Q 002435          572 PQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISG--TFPSWLGTLRELNVLILKSNKLHGMIREPNTG  649 (922)
Q Consensus       572 p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  649 (922)
                        .+..+++|++|++++|++++..|..+..+++|++|++++|++++  .+|..++.+++|++|++++|++.+.+|... +
T Consensus       319 --~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~-~  395 (520)
T 2z7x_B          319 --CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD-C  395 (520)
T ss_dssp             --CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS-C
T ss_pred             --chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch-h
Confidence              12455666666666666666666666666666666666666664  344555555555555555555554322211 1


Q ss_pred             CCCCCccEEEccCCcCCCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccccccc
Q 002435          650 CGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPN  729 (922)
Q Consensus       650 ~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  729 (922)
                      ..++                                                                            
T Consensus       396 ~~l~----------------------------------------------------------------------------  399 (520)
T 2z7x_B          396 SWTK----------------------------------------------------------------------------  399 (520)
T ss_dssp             CCCT----------------------------------------------------------------------------
T ss_pred             ccCc----------------------------------------------------------------------------
Confidence            2233                                                                            


Q ss_pred             cceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEecc
Q 002435          730 FLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVS  809 (922)
Q Consensus       730 ~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls  809 (922)
                      .|+.|+|++|++++.+|..+.  ++|++|||++|+++ .+|..+..+++|++|+|++|++++..+..+..+++|++|+++
T Consensus       400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~  476 (520)
T 2z7x_B          400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH  476 (520)
T ss_dssp             TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECc
Confidence            355556666666655555553  57777888888877 667767778888888888888885333347778888888888


Q ss_pred             CCccccCCC
Q 002435          810 NNNLTGPIP  818 (922)
Q Consensus       810 ~N~lsg~iP  818 (922)
                      +|++++.+|
T Consensus       477 ~N~~~c~c~  485 (520)
T 2z7x_B          477 TNPWDCSCP  485 (520)
T ss_dssp             SSCBCCCHH
T ss_pred             CCCCcccCC
Confidence            888877665

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.3e-42  Score=417.30  Aligned_cols=521  Identities=21%  Similarity=0.209  Sum_probs=341.9

Q ss_pred             CCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcC
Q 002435          111 VHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKL  190 (922)
Q Consensus       111 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l  190 (922)
                      +++++|||++|+++.. .|.+|.++++|++|||++|.+.+..|..|.++++|++|+|++|+++.++       +..+.++
T Consensus        52 ~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~-------~~~f~~L  123 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-------LGAFSGL  123 (635)
T ss_dssp             TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-------GGGGTTC
T ss_pred             cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC-------HHHhcCC
Confidence            4688888888888643 3456888888888888888887666667888888888888888764332       2346677


Q ss_pred             CCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCc-cCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCC----
Q 002435          191 TNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRG-RIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCL----  265 (922)
Q Consensus       191 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L----  265 (922)
                      ++|++|++++|.+++..+..++++++|++|++++|.+++ ..|..++.+++|++|++++|++++..+..+..+.++    
T Consensus       124 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~  203 (635)
T 4g8a_A          124 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN  203 (635)
T ss_dssp             TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred             CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhh
Confidence            777777777777776656667777777777777777654 345666677777777777777766666655544332    


Q ss_pred             cEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCC-CcccccCCCCCcEEEeeccCCC------CcccccccCCCCCc
Q 002435          266 KRLDISWNELSGELPASIGNLASLEQLELSLNRFRGK-TPHSMGNFTRLYWLSLASNDFS------GELPASFGNLRSLE  338 (922)
Q Consensus       266 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~------~~~p~~l~~l~~L~  338 (922)
                      ..++++.|.++.. +........++.+++.+|..... .+..+..+..++...+..+...      ......+..+..+.
T Consensus       204 ~~~~ls~n~l~~i-~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~  282 (635)
T 4g8a_A          204 LSLDLSLNPMNFI-QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT  282 (635)
T ss_dssp             CEEECTTCCCCEE-CTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSE
T ss_pred             hhhhcccCccccc-CcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchh
Confidence            3566666666633 33333334456666666544321 2233455555555555433221      11122223333344


Q ss_pred             eEecCCCccCc---cCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEE
Q 002435          339 GLDISECKFSS---QIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVG  415 (922)
Q Consensus       339 ~L~Ls~n~l~~---~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~  415 (922)
                      ..++..+....   ..+..+..+.+++.+.+.++.+....+   + .....++.|++.+|.+..+...   .+..++.++
T Consensus       283 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~---~-~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~  355 (635)
T 4g8a_A          283 IEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD---F-SYNFGWQHLELVNCKFGQFPTL---KLKSLKRLT  355 (635)
T ss_dssp             EEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG---G-GSCCCCSEEEEESCEESSCCCC---BCTTCCEEE
T ss_pred             hhhhhhhhhcccccchhhhhhhhcccccccccccccccccc---c-ccchhhhhhhcccccccCcCcc---cchhhhhcc
Confidence            33333322211   122233444455555555554442211   1 2344555555555555444332   234455555


Q ss_pred             ecCCCCCCCcccccCCCCccEEECcCCCCCCC--CCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccC
Q 002435          416 LRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGK--VPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSY  493 (922)
Q Consensus       416 L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~--~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~  493 (922)
                      +..+.....+. ...+++|+.++++.|.+...  .+..+.  .+.+++++++..|........                 
T Consensus       356 l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~~~~~~~~~~--~~~~L~~L~~~~~~~~~~~~~-----------------  415 (635)
T 4g8a_A          356 FTSNKGGNAFS-EVDLPSLEFLDLSRNGLSFKGCCSQSDF--GTISLKYLDLSFNGVITMSSN-----------------  415 (635)
T ss_dssp             EESCCSCCBCC-CCBCTTCCEEECCSSCCBEEEECCHHHH--SCSCCCEEECCSCSEEEECSC-----------------
T ss_pred             cccccCCCCcc-cccccccccchhhccccccccccccchh--hhhhhhhhhcccccccccccc-----------------
Confidence            55554443322 22344555555555554322  122222  344455555444443322111                 


Q ss_pred             ccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcc-cCCCc
Q 002435          494 NYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKF-CGSIP  572 (922)
Q Consensus       494 n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l-~~~~p  572 (922)
                             ....++++.+++..+......+...+..+.+++.+++++|.+.+..+..+..++ .++.|++++|.+ .+..|
T Consensus       416 -------~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~-~L~~L~Ls~N~~~~~~~~  487 (635)
T 4g8a_A          416 -------FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLP  487 (635)
T ss_dssp             -------CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT-TCCEEECTTCEEGGGEEC
T ss_pred             -------ccccccccchhhhhccccccccccccccccccccccccccccccccccccccch-hhhhhhhhhcccccccCc
Confidence                   123567888888888877777766666689999999999999999888888887 799999999985 45678


Q ss_pred             ccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCC
Q 002435          573 QTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGF  652 (922)
Q Consensus       573 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l  652 (922)
                      ..|..+++|++|+|++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|++|+|++|++++..|..+  ..+
T Consensus       488 ~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l--~~l  565 (635)
T 4g8a_A          488 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL--QHF  565 (635)
T ss_dssp             SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT--TCC
T ss_pred             hhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH--Hhh
Confidence            899999999999999999999999999999999999999999999999999999999999999999999988766  455


Q ss_pred             -CCccEEEccCCcCCCCCChhhhhcc
Q 002435          653 -PELRIIDLSNNRFTGKLPSKYFQCW  677 (922)
Q Consensus       653 -~~L~~LdLs~N~l~g~ip~~~~~~~  677 (922)
                       ++|+.|+|++|+|.|.+...||..|
T Consensus       566 ~~~L~~L~L~~Np~~C~C~~~~~~~w  591 (635)
T 4g8a_A          566 PSSLAFLNLTQNDFACTCEHQSFLQW  591 (635)
T ss_dssp             CTTCCEEECTTCCBCCSGGGHHHHHH
T ss_pred             hCcCCEEEeeCCCCcccCCcHHHHHH
Confidence             6899999999999999998888765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.9e-44  Score=420.37  Aligned_cols=462  Identities=21%  Similarity=0.229  Sum_probs=376.1

Q ss_pred             CEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCC
Q 002435          163 VSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLM  242 (922)
Q Consensus       163 ~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  242 (922)
                      ++||+++|.++.++        ..+.  ++|++|++++|.+++..|..+.++++|++|++++|++++..|..|+++++|+
T Consensus         3 ~~l~ls~n~l~~ip--------~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~   72 (520)
T 2z7x_B            3 FLVDRSKNGLIHVP--------KDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE   72 (520)
T ss_dssp             CEEECTTSCCSSCC--------CSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCC
T ss_pred             ceEecCCCCccccc--------cccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCC
Confidence            58999999975443        2222  8999999999999998889999999999999999999988899999999999


Q ss_pred             EEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCC-CchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCC--cEEEee
Q 002435          243 YLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSG-ELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRL--YWLSLA  319 (922)
Q Consensus       243 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~L~  319 (922)
                      +|+|++|+++ .+|..  .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+   ..+..+++|  +.|+++
T Consensus        73 ~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~  146 (520)
T 2z7x_B           73 YLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLV  146 (520)
T ss_dssp             EEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEE
T ss_pred             EEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEee
Confidence            9999999998 56665  89999999999999997 578999999999999999999986   457777888  999999


Q ss_pred             ccCC--CCcccccccCCC-CCceEecCCCccCccCch-hhcCCCCccEEEccCCC-------CcCccchhhhhhccCCcc
Q 002435          320 SNDF--SGELPASFGNLR-SLEGLDISECKFSSQIPS-SLRNLAQLKFLEFSHNN-------FSGPIDLDMFLVNFKHLE  388 (922)
Q Consensus       320 ~n~l--~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~-------l~~~~~~~~~~~~l~~L~  388 (922)
                      +|.+  .+..|..+..+. +...+++++|.+.+.++. .+..+++|+.+++++|.       +.+.++  . +..+++|+
T Consensus       147 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~-l~~l~~L~  223 (520)
T 2z7x_B          147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--K-LQTNPKLS  223 (520)
T ss_dssp             ECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--G-GGGCTTCC
T ss_pred             cccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--h-hccccchh
Confidence            9999  778888777765 344678889988876554 57789999999999997       555444  2 37899999


Q ss_pred             eEeCcCcccccccccccc---CCCCccEEEecCCCCC-CCcccc-----cCCCCccEEECcCCCCCCCCC-cccccc-CC
Q 002435          389 HLSLSSNRLSLFTKAIFN---TSQKFNFVGLRSCNLN-EFPNFL-----KNQHYLEVLDLSCNKIHGKVP-KWLIEP-SM  457 (922)
Q Consensus       389 ~L~Ls~n~l~~~~~~~~~---~~~~L~~L~L~~~~l~-~lp~~l-----~~~~~L~~L~Ls~n~l~~~~p-~~~~~~-~l  457 (922)
                      .|++++|.+++.....+.   ..++|++|++++|+++ .+|..+     ..+++|+.+++++|.+  .+| ..+... ..
T Consensus       224 ~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~  301 (520)
T 2z7x_B          224 NLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSN  301 (520)
T ss_dssp             EEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHT
T ss_pred             hccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhccccc
Confidence            999999987754322111   1357888888888887 777777     7788888888888877  455 333210 11


Q ss_pred             CCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEc
Q 002435          458 QNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDL  537 (922)
Q Consensus       458 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~L  537 (922)
                      .+|+.|++++|.+.....                         +...++++.|++++|.+++.+|..+.. +++|++|++
T Consensus       302 ~~L~~L~l~~n~l~~~~~-------------------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L  355 (520)
T 2z7x_B          302 MNIKNFTVSGTRMVHMLC-------------------------PSKISPFLHLDFSNNLLTDTVFENCGH-LTELETLIL  355 (520)
T ss_dssp             CCCSEEEEESSCCCCCCC-------------------------CSSCCCCCEEECCSSCCCTTTTTTCCC-CSSCCEEEC
T ss_pred             CceeEEEcCCCccccccc-------------------------hhhCCcccEEEeECCccChhhhhhhcc-CCCCCEEEc
Confidence            457777777666543211                         134677889999999999888887766 899999999


Q ss_pred             cCccCCC--CCCchhhhccCcccEEEcCCCcccCCCcc-cccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCc
Q 002435          538 SYNNLSG--LLPQCLDNFSDHLSILDLQHNKFCGSIPQ-TFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQ  614 (922)
Q Consensus       538 s~N~l~~--~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~  614 (922)
                      ++|++++  .+|..+..++ +|++|++++|++++.+|. .+..+++|++|++++|++++..|..+.  ++|++|++++|+
T Consensus       356 ~~N~l~~l~~~~~~~~~l~-~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~  432 (520)
T 2z7x_B          356 QMNQLKELSKIAEMTTQMK-SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK  432 (520)
T ss_dssp             CSSCCCBHHHHHHHHTTCT-TCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC
T ss_pred             cCCccCccccchHHHhhCC-CCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc
Confidence            9999997  4567788888 799999999999985665 488899999999999999988887765  799999999999


Q ss_pred             CccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhh-hcc
Q 002435          615 ISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYF-QCW  677 (922)
Q Consensus       615 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~-~~~  677 (922)
                      ++ .+|..+..+++|++|++++|++++. |.. .+..+++|+.|++++|+++|.++..++ ..|
T Consensus       433 l~-~ip~~~~~l~~L~~L~L~~N~l~~l-~~~-~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~  493 (520)
T 2z7x_B          433 IK-SIPKQVVKLEALQELNVASNQLKSV-PDG-IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW  493 (520)
T ss_dssp             CC-CCCGGGGGCTTCCEEECCSSCCCCC-CTT-TTTTCTTCCEEECCSSCBCCCHHHHHHHHHH
T ss_pred             cc-ccchhhhcCCCCCEEECCCCcCCcc-CHH-HhccCCcccEEECcCCCCcccCCchHHHHHH
Confidence            99 6788778999999999999999965 433 346789999999999999999987777 544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.2e-42  Score=410.15  Aligned_cols=87  Identities=23%  Similarity=0.305  Sum_probs=66.5

Q ss_pred             cceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEecc
Q 002435          730 FLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVS  809 (922)
Q Consensus       730 ~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls  809 (922)
                      .|+.|+|++|++++.+|..+.  ++|+.|+|++|+++ .+|..+.++++|++|+|++|+|++..+..+..+++|++|+++
T Consensus       429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~  505 (562)
T 3a79_B          429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH  505 (562)
T ss_dssp             TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECC
T ss_pred             cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEec
Confidence            466666777777666666554  67888888888888 567767788888888888888885444448888889999999


Q ss_pred             CCccccCCCC
Q 002435          810 NNNLTGPIPQ  819 (922)
Q Consensus       810 ~N~lsg~iP~  819 (922)
                      +|++.|.+|.
T Consensus       506 ~N~~~c~c~~  515 (562)
T 3a79_B          506 DNPWDCTCPG  515 (562)
T ss_dssp             SCCBCCCHHH
T ss_pred             CCCcCCCcch
Confidence            9988887764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.2e-40  Score=393.00  Aligned_cols=460  Identities=22%  Similarity=0.238  Sum_probs=297.4

Q ss_pred             CCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCC
Q 002435          137 RLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSS  216 (922)
Q Consensus       137 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~  216 (922)
                      ..+++|+++|++++ +|..+.  ++|++|++++|.                               +++..+..+.++++
T Consensus        32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~-------------------------------i~~~~~~~~~~l~~   77 (562)
T 3a79_B           32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNS-------------------------------ISELRMPDISFLSE   77 (562)
T ss_dssp             -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSC-------------------------------CCCCCGGGTTTCTT
T ss_pred             CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCC-------------------------------ccccChhhhccCCC
Confidence            34677777777643 565443  556666666655                               44444555666666


Q ss_pred             CCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCC-CchhhhhCCCCCCEEEcc
Q 002435          217 LTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSG-ELPASIGNLASLEQLELS  295 (922)
Q Consensus       217 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~  295 (922)
                      |++|++++|++++..|..|.++++|++|++++|.++ .+|..  .+++|++|++++|++++ .+|..+.++++|++|+++
T Consensus        78 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~  154 (562)
T 3a79_B           78 LRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS  154 (562)
T ss_dssp             CCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEE
T ss_pred             ccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecC
Confidence            666666666666555666666666666666666665 34433  56666666666666654 234566666666666666


Q ss_pred             CCCCCCCCcccccCCCCC--cEEEeeccCC--CCcccccccCCC-CCceEecCCCccCccCch-hhcCCCCccEEEccCC
Q 002435          296 LNRFRGKTPHSMGNFTRL--YWLSLASNDF--SGELPASFGNLR-SLEGLDISECKFSSQIPS-SLRNLAQLKFLEFSHN  369 (922)
Q Consensus       296 ~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n  369 (922)
                      +|.+.+..   +..+++|  ++|++++|.+  ++..|..+..+. ..-.++++.|.+.+.++. .+..+++|+.+++++|
T Consensus       155 ~n~l~~~~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  231 (562)
T 3a79_B          155 AAKFRQLD---LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLN  231 (562)
T ss_dssp             CSBCCTTT---TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECC
T ss_pred             CCccccCc---hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccc
Confidence            66665432   3333333  6666666666  555555555443 111445566666554332 3455666777777766


Q ss_pred             CC-----cCccchhhhhhccCCcceEeCcCcccccccccc---ccCCCCccEEEecCCCCC-CCcccc-----cCCCCcc
Q 002435          370 NF-----SGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAI---FNTSQKFNFVGLRSCNLN-EFPNFL-----KNQHYLE  435 (922)
Q Consensus       370 ~l-----~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~~~~L~~L~L~~~~l~-~lp~~l-----~~~~~L~  435 (922)
                      ..     .+.+  .. +..+++|+.++++++.+.+.....   .....+|++|++++|.++ .+|..+     ..++.|+
T Consensus       232 ~~~~~~l~~~~--~~-l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~  308 (562)
T 3a79_B          232 DENCQRLMTFL--SE-LTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLM  308 (562)
T ss_dssp             STTHHHHHHHH--HH-HHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEE
T ss_pred             ccccchHHHHH--HH-HhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchhee
Confidence            42     1111  11 245566666666665544321110   011235666666666655 555544     4555555


Q ss_pred             EEECcCCCCCCCCCc-cccc-cCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCC-CCCCCCceeec
Q 002435          436 VLDLSCNKIHGKVPK-WLIE-PSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLP-VPPPQTKHYLV  512 (922)
Q Consensus       436 ~L~Ls~n~l~~~~p~-~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~-~~~~~l~~L~l  512 (922)
                      .++++.+.+  .+|. ++.. ....++++|++++|.+                          ..... ...++++.|++
T Consensus       309 ~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~--------------------------~~~~~~~~l~~L~~L~l  360 (562)
T 3a79_B          309 IEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPF--------------------------IHMVCPPSPSSFTFLNF  360 (562)
T ss_dssp             EEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCC--------------------------CCCCCCSSCCCCCEEEC
T ss_pred             hhhccccee--ecChhhhhhhhccCcceEEEccCCCc--------------------------ccccCccCCCCceEEEC
Confidence            555555555  3332 1110 0113455555555544                          32221 44678899999


Q ss_pred             cCCcccCcCChhhhhcCCccceEEccCccCCCC--CCchhhhccCcccEEEcCCCcccCCCc-ccccCCCCccEEecCCC
Q 002435          513 SNNSLTGKIPFWICNSSNSLEILDLSYNNLSGL--LPQCLDNFSDHLSILDLQHNKFCGSIP-QTFLSGRSLMMIDLSDN  589 (922)
Q Consensus       513 s~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~--~p~~l~~l~~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N  589 (922)
                      ++|.+++.+|..+.. +++|++|++++|++++.  +|..+..++ +|++|++++|++++.+| ..+..+++|++|++++|
T Consensus       361 ~~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n  438 (562)
T 3a79_B          361 TQNVFTDSVFQGCST-LKRLQTLILQRNGLKNFFKVALMTKNMS-SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN  438 (562)
T ss_dssp             CSSCCCTTTTTTCCS-CSSCCEEECCSSCCCBTTHHHHTTTTCT-TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS
T ss_pred             CCCccccchhhhhcc-cCCCCEEECCCCCcCCcccchhhhcCCC-CCCEEECCCCcCCCccChhhhcCcccCCEEECCCC
Confidence            999999888877766 89999999999999974  345678887 79999999999998455 46889999999999999


Q ss_pred             cccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCC
Q 002435          590 LLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKL  669 (922)
Q Consensus       590 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~i  669 (922)
                      ++++..|..+.  ++|++|+|++|+++ .+|..+..+++|++|+|++|++++. |.. .+..+++|+.|++++|++.|.+
T Consensus       439 ~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l-~~~-~~~~l~~L~~L~l~~N~~~c~c  513 (562)
T 3a79_B          439 MLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSV-PDG-VFDRLTSLQYIWLHDNPWDCTC  513 (562)
T ss_dssp             CCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCC-CTT-STTTCTTCCCEECCSCCBCCCH
T ss_pred             CCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCC-CHH-HHhcCCCCCEEEecCCCcCCCc
Confidence            99988777665  79999999999999 5677777999999999999999965 433 3467899999999999999999


Q ss_pred             Chhhh
Q 002435          670 PSKYF  674 (922)
Q Consensus       670 p~~~~  674 (922)
                      |..++
T Consensus       514 ~~~~~  518 (562)
T 3a79_B          514 PGIRY  518 (562)
T ss_dssp             HHHHH
T ss_pred             chHHH
Confidence            98776

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=4.3e-40  Score=374.99  Aligned_cols=157  Identities=17%  Similarity=0.160  Sum_probs=67.1

Q ss_pred             CCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEE
Q 002435          214 LSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLE  293 (922)
Q Consensus       214 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  293 (922)
                      .++|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++++.+|+.+++.+|..           .++++|+
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~   77 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE   77 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence            36666666666666 56666666666666666666666666666666666655555444321           3456666


Q ss_pred             ccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcC
Q 002435          294 LSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSG  373 (922)
Q Consensus       294 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  373 (922)
                      +++|.+++. |..   .++|++|++++|.+++ +|..   +++|++|++++|++++ ++..   .++|++|++++|.+++
T Consensus        78 l~~~~l~~l-p~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~  145 (454)
T 1jl5_A           78 LNNLGLSSL-PEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK  145 (454)
T ss_dssp             CTTSCCSCC-CSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS
T ss_pred             ecCCccccC-CCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC
Confidence            666666542 211   2455566666665554 3432   2455555555555553 1110   1345555555554443


Q ss_pred             ccchhhhhhccCCcceEeCcCcccc
Q 002435          374 PIDLDMFLVNFKHLEHLSLSSNRLS  398 (922)
Q Consensus       374 ~~~~~~~~~~l~~L~~L~Ls~n~l~  398 (922)
                       +| . + ..+++|++|++++|+++
T Consensus       146 -lp-~-~-~~l~~L~~L~l~~N~l~  166 (454)
T 1jl5_A          146 -LP-E-L-QNSSFLKIIDVDNNSLK  166 (454)
T ss_dssp             -CC-C-C-TTCTTCCEEECCSSCCS
T ss_pred             -Cc-c-c-CCCCCCCEEECCCCcCc
Confidence             33 1 1 34444444444444443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=9.4e-40  Score=354.52  Aligned_cols=293  Identities=33%  Similarity=0.528  Sum_probs=203.2

Q ss_pred             CCCHHHHHHHHHHhhcCCcCCCCCcccccCCCCCCCCCCCCCCCCCCCcc--ccceEecCCC--CcEEEEECCCCCCCC-
Q 002435           25 LCHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCL--WDGVECNENT--GHVIKLDLSNSCLQG-   99 (922)
Q Consensus        25 ~~~~~~~~all~~k~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~l~g-   99 (922)
                      .|.++|++||++||+++.++.             .+++|..   +.+||.  |.||.|+..+  ++|++|+|+++.+.| 
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-------------~l~~W~~---~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~   65 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-------------TLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP   65 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-------------GGTTCCT---TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSC
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-------------cccCCCC---CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCC
Confidence            599999999999999996542             4789976   678998  9999998655  799999999999998 


Q ss_pred             -cccCccccccCCCCCeeeCCC-CCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCccc
Q 002435          100 -FINSSSGLFKLVHLEWLDLAF-NYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIE  177 (922)
Q Consensus       100 -~~~~~~~l~~l~~L~~L~Ls~-n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~  177 (922)
                       .++.  .+.++++|++|++++ |.+.+. +|..++++++|++|+|++|.+.+.+|..++++++|++|++++|.+.    
T Consensus        66 ~~~~~--~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~----  138 (313)
T 1ogq_A           66 YPIPS--SLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS----  138 (313)
T ss_dssp             EECCG--GGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE----
T ss_pred             cccCh--hHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC----
Confidence             6654  888899999999985 777655 7888888899999999998888888888888888888888888732    


Q ss_pred             ccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCC-CCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcc
Q 002435          178 LKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLS-SLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELP  256 (922)
Q Consensus       178 ~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~  256 (922)
                         +.+|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|++.+.+|..+..++ |++|++++|.+++..|
T Consensus       139 ---~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~  214 (313)
T 1ogq_A          139 ---GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS  214 (313)
T ss_dssp             ---SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG
T ss_pred             ---CcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC
Confidence               23445566666666666666666666666666665 666666666666666666665555 6666666666665555


Q ss_pred             cccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCC
Q 002435          257 TSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRS  336 (922)
Q Consensus       257 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  336 (922)
                      ..+..+++|++|++++|.+++.+|. +..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|.. ..+++
T Consensus       215 ~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~  292 (313)
T 1ogq_A          215 VLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQR  292 (313)
T ss_dssp             GGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGG
T ss_pred             HHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccc
Confidence            5666666666666666666544433 455555555555555555555555555555555555555555444443 44445


Q ss_pred             CceEecCCCc
Q 002435          337 LEGLDISECK  346 (922)
Q Consensus       337 L~~L~Ls~n~  346 (922)
                      |+.+++++|+
T Consensus       293 L~~l~l~~N~  302 (313)
T 1ogq_A          293 FDVSAYANNK  302 (313)
T ss_dssp             SCGGGTCSSS
T ss_pred             cChHHhcCCC
Confidence            5555555544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.4e-38  Score=363.85  Aligned_cols=399  Identities=23%  Similarity=0.237  Sum_probs=250.8

Q ss_pred             EEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCc-ccccCCCCCCcEEEcccC
Q 002435          195 ELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGEL-PTSIGNLDCLKRLDISWN  273 (922)
Q Consensus       195 ~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n  273 (922)
                      .++.+++.++. +|. +  .++|++|++++|.+++..|..++++++|++|++++|.+.+.+ +..|.++++|++|++++|
T Consensus        14 ~~~c~~~~l~~-lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n   89 (455)
T 3v47_A           14 NAICINRGLHQ-VPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN   89 (455)
T ss_dssp             EEECCSSCCSS-CCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred             ccCcCCCCccc-CCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence            44555554433 232 1  145666666666666555555666666666666666555333 344555666666666666


Q ss_pred             CCCCCchhhhhCCCCCCEEEccCCCCCCCCccc--ccCCCCCcEEEeeccCCCCccccc-ccCCCCCceEecCCCccCcc
Q 002435          274 ELSGELPASIGNLASLEQLELSLNRFRGKTPHS--MGNFTRLYWLSLASNDFSGELPAS-FGNLRSLEGLDISECKFSSQ  350 (922)
Q Consensus       274 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~  350 (922)
                      .+++..|..+.++++|++|++++|.+++..+..  +..+++|++|++++|.+++..|.. +..+++|++|++++|++++.
T Consensus        90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  169 (455)
T 3v47_A           90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI  169 (455)
T ss_dssp             TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred             ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence            655555555555555555555555555433322  455555555555555555444433 44455555555555555444


Q ss_pred             CchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcccccC
Q 002435          351 IPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKN  430 (922)
Q Consensus       351 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~  430 (922)
                      .+..+..+                        ...+|+.|++++|.+.......+..               .....+..
T Consensus       170 ~~~~l~~l------------------------~~~~L~~L~l~~n~l~~~~~~~~~~---------------~~~~~~~~  210 (455)
T 3v47_A          170 CEEDLLNF------------------------QGKHFTLLRLSSITLQDMNEYWLGW---------------EKCGNPFK  210 (455)
T ss_dssp             CTTTSGGG------------------------TTCEEEEEECTTCBCTTCSTTCTTH---------------HHHCCTTT
T ss_pred             Chhhhhcc------------------------ccccccccccccCcccccchhhccc---------------cccccccc
Confidence            44433332                        1133444444444433332211100               00011223


Q ss_pred             CCCccEEECcCCCCCCCCCcccccc-CCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCce
Q 002435          431 QHYLEVLDLSCNKIHGKVPKWLIEP-SMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKH  509 (922)
Q Consensus       431 ~~~L~~L~Ls~n~l~~~~p~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~  509 (922)
                      +++|++|++++|++++..|..+... ...+++.|++++|...+.....                                
T Consensus       211 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------------------------------  258 (455)
T 3v47_A          211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH--------------------------------  258 (455)
T ss_dssp             TCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC--------------------------------
T ss_pred             cceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccch--------------------------------
Confidence            4556666666666666655554311 2256666666666544321110                                


Q ss_pred             eeccCCcccCcCChhhhh-cCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCC
Q 002435          510 YLVSNNSLTGKIPFWICN-SSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSD  588 (922)
Q Consensus       510 L~ls~n~l~~~ip~~~~~-~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  588 (922)
                           +.+.+..+..+.. ..++|+.|++++|.+++..|..+..++ +|++|++++|++++..|..|..+++|++|+|++
T Consensus       259 -----~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  332 (455)
T 3v47_A          259 -----TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ  332 (455)
T ss_dssp             -----CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             -----hhhccCcccccccccccCceEEEecCccccccchhhcccCC-CCCEEECCCCcccccChhHhcCcccCCEEECCC
Confidence                 0011000111110 146899999999999999999999988 799999999999999899999999999999999


Q ss_pred             CcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCC
Q 002435          589 NLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGK  668 (922)
Q Consensus       589 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~  668 (922)
                      |++++..|..|.++++|++|+|++|++++..|.+|..+++|++|+|++|++++..+..+  ..+++|+.|++++|+++|.
T Consensus       333 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~l~~~  410 (455)
T 3v47_A          333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCS  410 (455)
T ss_dssp             SCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCC
T ss_pred             CccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHh--ccCCcccEEEccCCCcccC
Confidence            99999989999999999999999999999999999999999999999999998765543  6789999999999999999


Q ss_pred             CC-hhhhhc
Q 002435          669 LP-SKYFQC  676 (922)
Q Consensus       669 ip-~~~~~~  676 (922)
                      +| ..++..
T Consensus       411 ~~~~~~l~~  419 (455)
T 3v47_A          411 CPRIDYLSR  419 (455)
T ss_dssp             TTTTHHHHH
T ss_pred             CCcchHHHH
Confidence            99 444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=8.8e-38  Score=359.12  Aligned_cols=200  Identities=21%  Similarity=0.206  Sum_probs=135.7

Q ss_pred             CCccceEEccCccCCCCCCchhhhcc--CcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccC--CCC
Q 002435          529 SNSLEILDLSYNNLSGLLPQCLDNFS--DHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVN--CSS  604 (922)
Q Consensus       529 ~~~L~~L~Ls~N~l~~~~p~~l~~l~--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~--l~~  604 (922)
                      +++|++|++++|++++..|..+....  .+|+.|++++|.+.+..              +..+.+.+..+..+..  .++
T Consensus       211 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~  276 (455)
T 3v47_A          211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS--------------FGHTNFKDPDNFTFKGLEASG  276 (455)
T ss_dssp             TCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC--------------TTCCSSCCCCTTTTGGGTTSC
T ss_pred             cceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc--------------cchhhhccCcccccccccccC
Confidence            45667777777776666655554431  14666666666554321              1112222222222222  246


Q ss_pred             CcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecc
Q 002435          605 LKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVN  684 (922)
Q Consensus       605 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~  684 (922)
                      |++|++++|++++..|.++..+++|++|++++|++.+..|..+  .+++                               
T Consensus       277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~-------------------------------  323 (455)
T 3v47_A          277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF--WGLT-------------------------------  323 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT--TTCT-------------------------------
T ss_pred             ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHh--cCcc-------------------------------
Confidence            6666666666666666666666666666666666555433322  2222                               


Q ss_pred             cccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCcc
Q 002435          685 TSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNS  764 (922)
Q Consensus       685 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~  764 (922)
                                                                   .|+.|+|++|++++..|..|+++++|++|+|++|+
T Consensus       324 ---------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  358 (455)
T 3v47_A          324 ---------------------------------------------HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH  358 (455)
T ss_dssp             ---------------------------------------------TCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSC
T ss_pred             ---------------------------------------------cCCEEECCCCccCCcChhHhcCcccCCEEECCCCc
Confidence                                                         35566666666666667778889999999999999


Q ss_pred             ccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCCCC
Q 002435          765 LHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQG  820 (922)
Q Consensus       765 l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~~  820 (922)
                      +++.+|..|+++++|++|+|++|++++..+..+..+++|++|++++|+++|.+|..
T Consensus       359 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  414 (455)
T 3v47_A          359 IRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  414 (455)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             ccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence            99999999999999999999999999988888899999999999999999999853

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.1e-37  Score=355.12  Aligned_cols=357  Identities=22%  Similarity=0.272  Sum_probs=211.7

Q ss_pred             cCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCC-------------CEEeCcCCCCCCCc
Q 002435          189 KLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKL-------------MYLDLSFNNLLGEL  255 (922)
Q Consensus       189 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L-------------~~L~Ls~n~l~~~~  255 (922)
                      +.++|++|++++|.+ +.+|+.++++++|++|++++|++.|.+|..++++++|             ++|++++|++++ +
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l   86 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L   86 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred             ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence            468999999999999 8899999999999999999999999999999998875             888888888775 3


Q ss_pred             ccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCC
Q 002435          256 PTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLR  335 (922)
Q Consensus       256 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  335 (922)
                      |..   .++|++|++++|.+++ +|..   .++|++|++++|.+++.. ..   .++|++|++++|.+++ +| .+++++
T Consensus        87 p~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~-~~---~~~L~~L~L~~n~l~~-lp-~~~~l~  153 (454)
T 1jl5_A           87 PEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALS-DL---PPLLEYLGVSNNQLEK-LP-ELQNSS  153 (454)
T ss_dssp             CSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCC-SC---CTTCCEEECCSSCCSS-CC-CCTTCT
T ss_pred             CCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCccc-CC---CCCCCEEECcCCCCCC-Cc-ccCCCC
Confidence            332   3678888888888875 5543   367888888888777532 11   1577788888887775 56 477777


Q ss_pred             CCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEE
Q 002435          336 SLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVG  415 (922)
Q Consensus       336 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~  415 (922)
                      +|++|++++|++++ +|..   .++|++|++++|.+++ ++  .+ ..+++|++|++++|.+++++..    .++|+.|+
T Consensus       154 ~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~--~~-~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~  221 (454)
T 1jl5_A          154 FLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP--EL-QNLPFLTAIYADNNSLKKLPDL----PLSLESIV  221 (454)
T ss_dssp             TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC--CC-TTCTTCCEEECCSSCCSSCCCC----CTTCCEEE
T ss_pred             CCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc--cc-cCCCCCCEEECCCCcCCcCCCC----cCcccEEE
Confidence            88888888877775 4432   2477777777777765 33  12 5677777777777777665432    24667777


Q ss_pred             ecCCCCCCCcccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCcc
Q 002435          416 LRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNY  495 (922)
Q Consensus       416 L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~  495 (922)
                      +++|.++.+|. +..+++|++|++++|++++ +|.     ..++|++|++++|.++++.                     
T Consensus       222 l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~~-----~~~~L~~L~l~~N~l~~l~---------------------  273 (454)
T 1jl5_A          222 AGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPD-----LPPSLEALNVRDNYLTDLP---------------------  273 (454)
T ss_dssp             CCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCS-----CCTTCCEEECCSSCCSCCC---------------------
T ss_pred             CcCCcCCcccc-cCCCCCCCEEECCCCcCCc-ccc-----cccccCEEECCCCcccccC---------------------
Confidence            77777766664 5666667777777776664 332     2355666666666655432                     


Q ss_pred             ccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccc
Q 002435          496 LQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTF  575 (922)
Q Consensus       496 l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~  575 (922)
                            ..+++++.+++++|.+++ +|..    .++|+.|++++|++++. +    .++++|++|++++|++++ +|.. 
T Consensus       274 ------~~~~~L~~L~ls~N~l~~-l~~~----~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~-  335 (454)
T 1jl5_A          274 ------ELPQSLTFLDVSENIFSG-LSEL----PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL-  335 (454)
T ss_dssp             ------CCCTTCCEEECCSSCCSE-ESCC----CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC-
T ss_pred             ------cccCcCCEEECcCCccCc-ccCc----CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc-
Confidence                  223455555555555554 1110    13566666666666542 1    122256666666666664 3332 


Q ss_pred             cCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCcc--Ccchhhc
Q 002435          576 LSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISG--TFPSWLG  624 (922)
Q Consensus       576 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~  624 (922)
                        +++|++|++++|++++ +|.   .+++|++|++++|++++  .+|.++.
T Consensus       336 --~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~  380 (454)
T 1jl5_A          336 --PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVE  380 (454)
T ss_dssp             --CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCC
T ss_pred             --CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHH
Confidence              3566666666666663 343   35666666666666666  4555444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.2e-37  Score=352.96  Aligned_cols=367  Identities=19%  Similarity=0.186  Sum_probs=231.5

Q ss_pred             hhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCC
Q 002435          209 HSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLAS  288 (922)
Q Consensus       209 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  288 (922)
                      ..++++++|++|++++|.+++. | .++.+++|++|++++|.+++. |  ++.+++|++|++++|.+++. +  ++++++
T Consensus        36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~  107 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTK  107 (457)
T ss_dssp             EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred             cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCc
Confidence            3444455555555555555532 2 345555555555555555543 2  45555555555555555532 2  455555


Q ss_pred             CCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccC
Q 002435          289 LEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSH  368 (922)
Q Consensus       289 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~  368 (922)
                      |++|++++|++++. +  ++.+++|++|++++|.+++. +  ++.+++|++|++++|+..+.+  .+..+++|++|++++
T Consensus       108 L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~  179 (457)
T 3bz5_A          108 LTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF  179 (457)
T ss_dssp             CCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence            55555555555542 2  45555555555555555542 1  455555666666655443333  245555666666666


Q ss_pred             CCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCC
Q 002435          369 NNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKV  448 (922)
Q Consensus       369 n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~  448 (922)
                      |++++ ++    +..+++|+.|++++|.++++   .+..+++|+.|++++|+++.+|  +..+++|++|++++|++++..
T Consensus       180 n~l~~-l~----l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~  249 (457)
T 3bz5_A          180 NKITE-LD----VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD  249 (457)
T ss_dssp             SCCCC-CC----CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred             Cccce-ec----cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC
Confidence            66554 22    14556666666666666654   2455666666666666666665  566777778888888777643


Q ss_pred             CccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhc
Q 002435          449 PKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNS  528 (922)
Q Consensus       449 p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~  528 (922)
                      +.     .+++|+.|++++|.+                                     +.+++++|.+.|.+|.  . .
T Consensus       250 ~~-----~l~~L~~L~l~~n~L-------------------------------------~~L~l~~n~~~~~~~~--~-~  284 (457)
T 3bz5_A          250 VS-----TLSKLTTLHCIQTDL-------------------------------------LEIDLTHNTQLIYFQA--E-G  284 (457)
T ss_dssp             CT-----TCTTCCEEECTTCCC-------------------------------------SCCCCTTCTTCCEEEC--T-T
T ss_pred             HH-----HCCCCCEEeccCCCC-------------------------------------CEEECCCCccCCcccc--c-c
Confidence            22     456777777666543                                     4455666666666663  2 2


Q ss_pred             CCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEE
Q 002435          529 SNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFL  608 (922)
Q Consensus       529 ~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  608 (922)
                      +++|+.|++++|...+.+|..   .. +|+.|++++|             ++|++|++++|++++.   .+..+++|+.|
T Consensus       285 l~~L~~L~Ls~n~~l~~l~~~---~~-~L~~L~l~~~-------------~~L~~L~L~~N~l~~l---~l~~l~~L~~L  344 (457)
T 3bz5_A          285 CRKIKELDVTHNTQLYLLDCQ---AA-GITELDLSQN-------------PKLVYLYLNNTELTEL---DVSHNTKLKSL  344 (457)
T ss_dssp             CTTCCCCCCTTCTTCCEEECT---TC-CCSCCCCTTC-------------TTCCEEECTTCCCSCC---CCTTCTTCSEE
T ss_pred             cccCCEEECCCCcccceeccC---CC-cceEechhhc-------------ccCCEEECCCCccccc---ccccCCcCcEE
Confidence            678999999999887776643   23 5666666554             6899999999999985   38899999999


Q ss_pred             ECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccce
Q 002435          609 DLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQ  681 (922)
Q Consensus       609 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~  681 (922)
                      ++++|++++        ++.|..|++++|++.|.       ..+..|+.+++++|+++|.+|..++..+.++.
T Consensus       345 ~l~~N~l~~--------l~~L~~L~l~~n~l~g~-------~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~  402 (457)
T 3bz5_A          345 SCVNAHIQD--------FSSVGKIPALNNNFEAE-------GQTITMPKETLTNNSLTIAVSPDLLDQFGNPM  402 (457)
T ss_dssp             ECCSSCCCB--------CTTGGGSSGGGTSEEEE-------EEEEECCCBCCBTTBEEEECCTTCBCTTSCCC
T ss_pred             ECCCCCCCC--------ccccccccccCCcEEec-------ceeeecCccccccCcEEEEcChhHhcccCcee
Confidence            999999986        25667778999999887       34567888999999999999988776655543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=4.8e-36  Score=341.88  Aligned_cols=325  Identities=19%  Similarity=0.216  Sum_probs=226.6

Q ss_pred             cCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcc
Q 002435          226 ELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPH  305 (922)
Q Consensus       226 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  305 (922)
                      ...+..+..++++++|++|++++|.+++. | .++.+++|++|++++|.+++. |  +..+++|++|++++|.+++. + 
T Consensus        29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~-  101 (457)
T 3bz5_A           29 EMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D-  101 (457)
T ss_dssp             TCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C-
T ss_pred             CcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e-
Confidence            34445566788899999999999999865 4 688999999999999999864 4  88899999999999999875 3 


Q ss_pred             cccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccC
Q 002435          306 SMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFK  385 (922)
Q Consensus       306 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~  385 (922)
                       ++.+++|++|++++|.+++ +|  ++.+++|++|++++|++++.   .++.+++|++|++++|...+.++    +..++
T Consensus       102 -~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~----~~~l~  170 (457)
T 3bz5_A          102 -VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD----VTPQT  170 (457)
T ss_dssp             -CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC----CTTCT
T ss_pred             -cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc----cccCC
Confidence             8889999999999999986 34  78889999999999999874   37888899999999997666653    25678


Q ss_pred             CcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEc
Q 002435          386 HLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNL  465 (922)
Q Consensus       386 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L  465 (922)
                      +|++|++++|++++++   +..+++|+.|++++|.++.++  +..+++|++|++++|++++ +|  +.  .+++|++|++
T Consensus       171 ~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~--~l~~L~~L~l  240 (457)
T 3bz5_A          171 QLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VT--PLTQLTYFDC  240 (457)
T ss_dssp             TCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CT--TCTTCSEEEC
T ss_pred             cCCEEECCCCccceec---cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--cc--ccCCCCEEEe
Confidence            8888888888888764   556777777777777777663  5667777777777777765 34  22  5566666666


Q ss_pred             cCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCC
Q 002435          466 SHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGL  545 (922)
Q Consensus       466 ~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~  545 (922)
                      ++|++++..                          +..                         +++|+.|++++|     
T Consensus       241 ~~N~l~~~~--------------------------~~~-------------------------l~~L~~L~l~~n-----  264 (457)
T 3bz5_A          241 SVNPLTELD--------------------------VST-------------------------LSKLTTLHCIQT-----  264 (457)
T ss_dssp             CSSCCSCCC--------------------------CTT-------------------------CTTCCEEECTTC-----
T ss_pred             eCCcCCCcC--------------------------HHH-------------------------CCCCCEEeccCC-----
Confidence            665554321                          111                         344555555443     


Q ss_pred             CCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcC
Q 002435          546 LPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGT  625 (922)
Q Consensus       546 ~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  625 (922)
                                +|+.|++++|.+.+.+|  ++.+++|+.|++++|...+.+|.   ..++|+.|++++|            
T Consensus       265 ----------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~------------  317 (457)
T 3bz5_A          265 ----------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN------------  317 (457)
T ss_dssp             ----------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC------------
T ss_pred             ----------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc------------
Confidence                      24445555555555554  34556666666666665555543   2344444444443            


Q ss_pred             CCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCC
Q 002435          626 LRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTG  667 (922)
Q Consensus       626 l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g  667 (922)
                       ++|++|++++|++++. +    ...+++|+.||+++|++++
T Consensus       318 -~~L~~L~L~~N~l~~l-~----l~~l~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          318 -PKLVYLYLNNTELTEL-D----VSHNTKLKSLSCVNAHIQD  353 (457)
T ss_dssp             -TTCCEEECTTCCCSCC-C----CTTCTTCSEEECCSSCCCB
T ss_pred             -ccCCEEECCCCccccc-c----cccCCcCcEEECCCCCCCC
Confidence             4566666666666663 1    2456666777777766653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.1e-33  Score=322.90  Aligned_cols=148  Identities=28%  Similarity=0.327  Sum_probs=77.1

Q ss_pred             ccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHH
Q 002435          108 FKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLV  187 (922)
Q Consensus       108 ~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~  187 (922)
                      ..+++|+.|+++++.+..  +| .+..+++|++|++++|.+.+. |+ ++++++|++|++++|.+...        +. +
T Consensus        43 ~~l~~l~~L~l~~~~i~~--l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--------~~-~  108 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKS--ID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADI--------TP-L  108 (466)
T ss_dssp             HHHHTCCEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--------GG-G
T ss_pred             hHhccccEEecCCCCCcc--Cc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccC--------hh-h
Confidence            346677777777777642  44 366677777777777776443 33 66777777777777664221        11 4


Q ss_pred             hcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcE
Q 002435          188 KKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKR  267 (922)
Q Consensus       188 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  267 (922)
                      .++++|++|++++|.+++..+  +.++++|++|++++|.+.+. + .++.+++|++|+++ |.+.+..  .+.++++|++
T Consensus       109 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~  181 (466)
T 1o6v_A          109 ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLER  181 (466)
T ss_dssp             TTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCE
T ss_pred             cCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCE
Confidence            455555555555555544322  44555555555555544431 1 24444444444443 2222221  1444444444


Q ss_pred             EEcccCCCC
Q 002435          268 LDISWNELS  276 (922)
Q Consensus       268 L~L~~n~l~  276 (922)
                      |++++|.++
T Consensus       182 L~l~~n~l~  190 (466)
T 1o6v_A          182 LDISSNKVS  190 (466)
T ss_dssp             EECCSSCCC
T ss_pred             EECcCCcCC
Confidence            444444443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.5e-33  Score=321.03  Aligned_cols=327  Identities=30%  Similarity=0.376  Sum_probs=166.4

Q ss_pred             ccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCC
Q 002435          211 LANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLE  290 (922)
Q Consensus       211 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  290 (922)
                      +..+++|++|++++|.+.+..+  +.++++|++|++++|.+++..+  ++++++|++|++++|.+++. +. +.++++|+
T Consensus        64 ~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~  137 (466)
T 1o6v_A           64 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNLN  137 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCS
T ss_pred             hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCC
Confidence            3344444444444444443222  4444444444444444443322  44444555555555444432 11 44445555


Q ss_pred             EEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCC
Q 002435          291 QLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNN  370 (922)
Q Consensus       291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~  370 (922)
                      +|++++|.+.+. + .+..+++|++|+++ +.+.+..  .+..+++|++|++++|.+.+.  ..+..+++|++|++++|.
T Consensus       138 ~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~  210 (466)
T 1o6v_A          138 RLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQ  210 (466)
T ss_dssp             EEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC
T ss_pred             EEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCc
Confidence            555555544432 1 24445555555553 2222221  144555555555555555432  224455555555555555


Q ss_pred             CcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCc
Q 002435          371 FSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPK  450 (922)
Q Consensus       371 l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~  450 (922)
                      +.+..+    ...+++|++|++++|.++.+                        + .+..+++|++|++++|.+.+..+ 
T Consensus       211 l~~~~~----~~~l~~L~~L~l~~n~l~~~------------------------~-~l~~l~~L~~L~l~~n~l~~~~~-  260 (466)
T 1o6v_A          211 ISDITP----LGILTNLDELSLNGNQLKDI------------------------G-TLASLTNLTDLDLANNQISNLAP-  260 (466)
T ss_dssp             CCCCGG----GGGCTTCCEEECCSSCCCCC------------------------G-GGGGCTTCSEEECCSSCCCCCGG-
T ss_pred             cccccc----ccccCCCCEEECCCCCcccc------------------------h-hhhcCCCCCEEECCCCccccchh-
Confidence            543322    13344455555554444432                        2 23444555555555555554333 


Q ss_pred             cccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCC
Q 002435          451 WLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSN  530 (922)
Q Consensus       451 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~  530 (922)
                       +.  .+++|+.|++++|.+++..                                                . +.. ++
T Consensus       261 -~~--~l~~L~~L~l~~n~l~~~~------------------------------------------------~-~~~-l~  287 (466)
T 1o6v_A          261 -LS--GLTKLTELKLGANQISNIS------------------------------------------------P-LAG-LT  287 (466)
T ss_dssp             -GT--TCTTCSEEECCSSCCCCCG------------------------------------------------G-GTT-CT
T ss_pred             -hh--cCCCCCEEECCCCccCccc------------------------------------------------c-ccC-CC
Confidence             21  3444444444444332211                                                0 111 45


Q ss_pred             ccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEEC
Q 002435          531 SLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDL  610 (922)
Q Consensus       531 ~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  610 (922)
                      +|+.|++++|++++..+  +..++ +|+.|++++|++++..|  +..+++|++|++++|++++.  ..+..+++|++|++
T Consensus       288 ~L~~L~L~~n~l~~~~~--~~~l~-~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l  360 (466)
T 1o6v_A          288 ALTNLELNENQLEDISP--ISNLK-NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSA  360 (466)
T ss_dssp             TCSEEECCSSCCSCCGG--GGGCT-TCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEEC
T ss_pred             ccCeEEcCCCcccCchh--hcCCC-CCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeC
Confidence            56666666666665432  45555 56677777776665554  55667777777777777654  35667777777777


Q ss_pred             CCCcCccCcchhhcCCCCCCEEEcCCCccccc
Q 002435          611 GNNQISGTFPSWLGTLRELNVLILKSNKLHGM  642 (922)
Q Consensus       611 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  642 (922)
                      ++|++++..|  +..+++|+.|++++|++++.
T Consensus       361 ~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          361 GHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             CSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             CCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            7777776665  66677777777777777663

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.4e-34  Score=332.42  Aligned_cols=258  Identities=19%  Similarity=0.144  Sum_probs=213.8

Q ss_pred             CCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEE
Q 002435          529 SNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFL  608 (922)
Q Consensus       529 ~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  608 (922)
                      +++|++|++++|.+++..|..|..++ +|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|
T Consensus       103 l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  181 (477)
T 2id5_A          103 LSNLTKLDISENKIVILLDYMFQDLY-NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL  181 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCT-TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEE
T ss_pred             CCCCCEEECCCCccccCChhHccccc-cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEE
Confidence            77888888888888888888888887 78889998888888888888888889999999998887777778888899999


Q ss_pred             ECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccc
Q 002435          609 DLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSEL  688 (922)
Q Consensus       609 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~  688 (922)
                      ++++|++.+..+..|..+++|+.|++++|++.+.+|...  ....+|+.|++++|+++ .+|...+..            
T Consensus       182 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~-~~~~~~~~~------------  246 (477)
T 2id5_A          182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC--LYGLNLTSLSITHCNLT-AVPYLAVRH------------  246 (477)
T ss_dssp             EEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT--TTTCCCSEEEEESSCCC-SCCHHHHTT------------
T ss_pred             eCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc--ccCccccEEECcCCccc-ccCHHHhcC------------
Confidence            999998888888888888899999998888777766654  33458889999998887 455443322            


Q ss_pred             cccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCcccccc
Q 002435          689 RYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGH  768 (922)
Q Consensus       689 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~  768 (922)
                                                             .+.|+.|+|++|.+++..+..|..+++|+.|+|++|++++.
T Consensus       247 ---------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  287 (477)
T 2id5_A          247 ---------------------------------------LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV  287 (477)
T ss_dssp             ---------------------------------------CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEE
T ss_pred             ---------------------------------------ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceE
Confidence                                                   24688999999999999889999999999999999999999


Q ss_pred             CCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCCCCCCccccCCCcCCCCCC
Q 002435          769 ILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLCGKP  841 (922)
Q Consensus       769 ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~~~~~~~~~~~s~~gn~~lcg~~  841 (922)
                      .|..|.++++|+.|+|++|+|++..+..|..+++|+.|++++|++.+..+....+.......+.++...|..|
T Consensus       288 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          288 EPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             CTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred             CHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence            9999999999999999999999999999999999999999999999876532222222334566777777654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=5.9e-35  Score=316.74  Aligned_cols=259  Identities=35%  Similarity=0.539  Sum_probs=226.0

Q ss_pred             CccceEEccCccCCC--CCCchhhhccCcccEEEcCC-CcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCc
Q 002435          530 NSLEILDLSYNNLSG--LLPQCLDNFSDHLSILDLQH-NKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLK  606 (922)
Q Consensus       530 ~~L~~L~Ls~N~l~~--~~p~~l~~l~~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~  606 (922)
                      .+++.|++++|.+++  .+|..+..++ +|++|++++ |.+++.+|..|..+++|++|++++|++++.+|..|.++++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            467888888888888  7888888887 788888884 888888888888888888888888888888888888888888


Q ss_pred             EEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCC-CccEEEccCCcCCCCCChhhhhccccceeccc
Q 002435          607 FLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFP-ELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNT  685 (922)
Q Consensus       607 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~  685 (922)
                      +|+|++|++++.+|..+..+++|++|++++|++++.+|..+  ..++ +|+.|++++|++++.+|..+ ..         
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~~L~~L~L~~N~l~~~~~~~~-~~---------  196 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPTF-AN---------  196 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGGG-GG---------
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH--hhhhhcCcEEECcCCeeeccCChHH-hC---------
Confidence            88888888888888888888888888888888888777655  5566 88999999998887777542 10         


Q ss_pred             ccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccc
Q 002435          686 SELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSL  765 (922)
Q Consensus       686 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l  765 (922)
                                                                .. |+.|+|++|++++.+|..|+.+++|+.|+|++|++
T Consensus       197 ------------------------------------------l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  233 (313)
T 1ogq_A          197 ------------------------------------------LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             ------------------------------------------CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred             ------------------------------------------Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence                                                      12 78999999999999999999999999999999999


Q ss_pred             cccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCCCCCCccccCCCcCCCCCCCCCC
Q 002435          766 HGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLCGKPLPKE  845 (922)
Q Consensus       766 ~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~~~~~~~~~~~s~~gn~~lcg~~~~~~  845 (922)
                      ++.+|. +..+++|++|+|++|+++|.+|..+.++++|++|++++|+++|.+|...++..+....+.||+++||.|++ .
T Consensus       234 ~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~  311 (313)
T 1ogq_A          234 AFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-A  311 (313)
T ss_dssp             CCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-C
T ss_pred             eeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-C
Confidence            988877 88999999999999999999999999999999999999999999999888888888899999999998876 4


Q ss_pred             C
Q 002435          846 C  846 (922)
Q Consensus       846 c  846 (922)
                      |
T Consensus       312 C  312 (313)
T 1ogq_A          312 C  312 (313)
T ss_dssp             C
T ss_pred             C
Confidence            6

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1e-31  Score=310.36  Aligned_cols=301  Identities=21%  Similarity=0.237  Sum_probs=212.2

Q ss_pred             CCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcC
Q 002435          111 VHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKL  190 (922)
Q Consensus       111 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l  190 (922)
                      +++++|+|++|.+.+. .|..|.++++|++|+|++|.+.+..|..++++++|++|+|++|+                   
T Consensus        32 ~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-------------------   91 (477)
T 2id5_A           32 TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-------------------   91 (477)
T ss_dssp             TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-------------------
T ss_pred             CCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-------------------
Confidence            3556666666655432 34455555666666666655555555555555555555555554                   


Q ss_pred             CCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEc
Q 002435          191 TNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDI  270 (922)
Q Consensus       191 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  270 (922)
                                  +++..+..+.++++|++|++++|++.+..+..+..+++|++|++++|.+++..+..|.++++|++|++
T Consensus        92 ------------l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  159 (477)
T 2id5_A           92 ------------LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL  159 (477)
T ss_dssp             ------------CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEE
T ss_pred             ------------CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEEC
Confidence                        44444556788899999999999998888888888999999999999988887888888999999999


Q ss_pred             ccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCcc
Q 002435          271 SWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQ  350 (922)
Q Consensus       271 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  350 (922)
                      ++|.+++..+..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|...+.+|.......+|++|++++|++++.
T Consensus       160 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  239 (477)
T 2id5_A          160 EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV  239 (477)
T ss_dssp             ESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC
T ss_pred             CCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccccc
Confidence            99988877777788888999999998888887777888888888888888887777776666666888888888888765


Q ss_pred             CchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcc-ccc
Q 002435          351 IPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPN-FLK  429 (922)
Q Consensus       351 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~-~l~  429 (922)
                      .+..+..+++|+.|++++|.+++ ++...+ ..+++|++|++++|+++++.+..|..+++|+.|++++|.++.++. .+.
T Consensus       240 ~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  317 (477)
T 2id5_A          240 PYLAVRHLVYLRFLNLSYNPIST-IEGSML-HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH  317 (477)
T ss_dssp             CHHHHTTCTTCCEEECCSSCCCE-ECTTSC-TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBS
T ss_pred             CHHHhcCccccCeeECCCCcCCc-cChhhc-cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcC
Confidence            55667777778888887777763 333333 566777777777777776666666555555555555555554443 334


Q ss_pred             CCCCccEEECcCCCCC
Q 002435          430 NQHYLEVLDLSCNKIH  445 (922)
Q Consensus       430 ~~~~L~~L~Ls~n~l~  445 (922)
                      .+++|++|++++|++.
T Consensus       318 ~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          318 SVGNLETLILDSNPLA  333 (477)
T ss_dssp             CGGGCCEEECCSSCEE
T ss_pred             CCcccCEEEccCCCcc
Confidence            4555555555555544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.9e-31  Score=299.43  Aligned_cols=350  Identities=19%  Similarity=0.162  Sum_probs=186.0

Q ss_pred             CCCCCCCCCCCCCcc-ccceEecCCCCcEEEEECCCCCCCCcccCccccccCCCCCeeeCCCCCCCCCCCCcc-ccCCCC
Q 002435           60 TASWKPEEANIDCCL-WDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPE-IINLSR  137 (922)
Q Consensus        60 ~~~w~~~~~~~~~c~-w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~-l~~l~~  137 (922)
                      +++|..   +.+||. |.++.|.-..-++     ...........  .-..++++++|+++++.+..  +|+. +..+++
T Consensus         3 ~~~~~~---~~~C~~~~~~~~c~~~~~~i-----~~~~~~~~~~~--~~~~l~~l~~l~l~~~~l~~--l~~~~~~~l~~   70 (390)
T 3o6n_A            3 VKPRQP---EYKCIDSNLQYDCVFYDVHI-----DMQTQDVYFGF--EDITLNNQKIVTFKNSTMRK--LPAALLDSFRQ   70 (390)
T ss_dssp             ----CC---EECBCC------EEEESCEE-----CSSCCCCEESC--SSGGGCCCSEEEEESCEESE--ECTHHHHHCCC
T ss_pred             cCCCCC---ccceehhhhhhccceeeeee-----ecccccccccc--cccccCCceEEEecCCchhh--CChhHhccccc
Confidence            567876   667774 5555553211111     11111111111  22345677777777776632  4443 566777


Q ss_pred             CCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCC
Q 002435          138 LSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSL  217 (922)
Q Consensus       138 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L  217 (922)
                      |++|++++|.+.+..+..++.+++|++|++++|.+                               ++..|..++++++|
T Consensus        71 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-------------------------------~~~~~~~~~~l~~L  119 (390)
T 3o6n_A           71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-------------------------------RYLPPHVFQNVPLL  119 (390)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-------------------------------CCCCTTTTTTCTTC
T ss_pred             CcEEECCCCcccccChhhccCCCCcCEEECCCCCC-------------------------------CcCCHHHhcCCCCC
Confidence            77777777776555555666666666666666653                               33334444555555


Q ss_pred             CEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCC
Q 002435          218 TLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLN  297 (922)
Q Consensus       218 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  297 (922)
                      ++|++++|++....+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++.   .+..+++|++|++++|
T Consensus       120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n  196 (390)
T 3o6n_A          120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN  196 (390)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSS
T ss_pred             CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccc
Confidence            5555555555533223344555555555555555544444455555555555555555432   1334455555555555


Q ss_pred             CCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccch
Q 002435          298 RFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDL  377 (922)
Q Consensus       298 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  377 (922)
                      .+.+     +...++|++|++++|.+... |..  ..++|++|++++|.+++.  ..+..+++|++|++++|.+.+..+.
T Consensus       197 ~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~  266 (390)
T 3o6n_A          197 LLST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH  266 (390)
T ss_dssp             CCSE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred             cccc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh
Confidence            4442     22234555555555555432 221  134566666666665542  3455566666666666665543332


Q ss_pred             hhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCccccccCC
Q 002435          378 DMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSM  457 (922)
Q Consensus       378 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l  457 (922)
                       .+ ..+++|++|++++|++++++. .+..+++|+.|++++|.++.+|..+..+++|++|++++|+++...   +.  .+
T Consensus       267 -~~-~~l~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~---~~--~~  338 (390)
T 3o6n_A          267 -PF-VKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK---LS--TH  338 (390)
T ss_dssp             -GG-TTCSSCCEEECCSSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC---CC--TT
T ss_pred             -Hc-cccccCCEEECCCCcCcccCc-ccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC---ch--hh
Confidence             22 455666666666666655433 224566777777777777777776777777888888888776442   12  56


Q ss_pred             CCccEEEccCCccccc
Q 002435          458 QNFSYLNLSHNFLIGF  473 (922)
Q Consensus       458 ~~L~~L~L~~n~l~~~  473 (922)
                      ++|+.|++++|++.+.
T Consensus       339 ~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          339 HTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             CCCSEEECCSSCEEHH
T ss_pred             ccCCEEEcCCCCccch
Confidence            7777888887777653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=8.1e-32  Score=302.45  Aligned_cols=322  Identities=21%  Similarity=0.214  Sum_probs=191.4

Q ss_pred             CCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEE
Q 002435          214 LSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLE  293 (922)
Q Consensus       214 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  293 (922)
                      ++++++|++++|.+....+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+.++++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            45666666666666544333455666666666666666655555566666666666666666555555555555555555


Q ss_pred             ccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcC
Q 002435          294 LSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSG  373 (922)
Q Consensus       294 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  373 (922)
                      +++|.++...+..+..+++|++|++++                        |.+.+..+..+..+++|++|++++|.+++
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~------------------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSN------------------------NNLERIEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCS------------------------SCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCC------------------------CccCccChhhccCCCCCCEEECCCCcCCc
Confidence            555555533333334444444444444                        44444334444444444444444444432


Q ss_pred             ccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCcccc
Q 002435          374 PIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLI  453 (922)
Q Consensus       374 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~  453 (922)
                      . +.    ..+++|++|++++|.++.+.                            ..++|++|++++|.+... |..  
T Consensus       180 ~-~~----~~l~~L~~L~l~~n~l~~~~----------------------------~~~~L~~L~l~~n~l~~~-~~~--  223 (390)
T 3o6n_A          180 V-DL----SLIPSLFHANVSYNLLSTLA----------------------------IPIAVEELDASHNSINVV-RGP--  223 (390)
T ss_dssp             C-CG----GGCTTCSEEECCSSCCSEEE----------------------------CCSSCSEEECCSSCCCEE-ECC--
T ss_pred             c-cc----ccccccceeecccccccccC----------------------------CCCcceEEECCCCeeeec-ccc--
Confidence            1 11    23344444444444433221                            112344444444444311 000  


Q ss_pred             ccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccc
Q 002435          454 EPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLE  533 (922)
Q Consensus       454 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~  533 (922)
                        .                                                                        .++|+
T Consensus       224 --~------------------------------------------------------------------------~~~L~  229 (390)
T 3o6n_A          224 --V------------------------------------------------------------------------NVELT  229 (390)
T ss_dssp             --C------------------------------------------------------------------------CSSCC
T ss_pred             --c------------------------------------------------------------------------ccccc
Confidence              0                                                                        23466


Q ss_pred             eEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCC
Q 002435          534 ILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNN  613 (922)
Q Consensus       534 ~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N  613 (922)
                      .|++++|.+++.  ..+..++ +|++|++++|.+++..|..|..+++|++|++++|++++ +|..+..+++|++|+|++|
T Consensus       230 ~L~l~~n~l~~~--~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n  305 (390)
T 3o6n_A          230 ILKLQHNNLTDT--AWLLNYP-GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN  305 (390)
T ss_dssp             EEECCSSCCCCC--GGGGGCT-TCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSS
T ss_pred             EEECCCCCCccc--HHHcCCC-CccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCC
Confidence            666666666543  3555555 67777777777777777778888888888888888875 4555677888888888888


Q ss_pred             cCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhcccc
Q 002435          614 QISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNA  679 (922)
Q Consensus       614 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~  679 (922)
                      +++ .+|..+..+++|++|++++|+++...     ...+++|+.|++++|++.|.....++..+..
T Consensus       306 ~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~-----~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~  365 (390)
T 3o6n_A          306 HLL-HVERNQPQFDRLENLYLDHNSIVTLK-----LSTHHTLKNLTLSHNDWDCNSLRALFRNVAR  365 (390)
T ss_dssp             CCC-CCGGGHHHHTTCSEEECCSSCCCCCC-----CCTTCCCSEEECCSSCEEHHHHHHHTTTCCT
T ss_pred             cce-ecCccccccCcCCEEECCCCccceeC-----chhhccCCEEEcCCCCccchhHHHHHHHHHh
Confidence            888 45666778888888999888887652     2557889999999999988766666555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=1.4e-31  Score=317.13  Aligned_cols=321  Identities=22%  Similarity=0.227  Sum_probs=220.2

Q ss_pred             CCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEE
Q 002435          214 LSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLE  293 (922)
Q Consensus       214 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  293 (922)
                      +++++.+++++|.+....+..+..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            56788999999988866666678888888888888888877777888888888888888888877777777888888888


Q ss_pred             ccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcC
Q 002435          294 LSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSG  373 (922)
Q Consensus       294 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  373 (922)
                      |++|.+++..+..|+.+++|++|++++|.+++..|..+..+++|++|++++|.+++..   +.                 
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~-----------------  189 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LS-----------------  189 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GG-----------------
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hh-----------------
Confidence            8888777555555566666666666666666555555555555555555555554321   22                 


Q ss_pred             ccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCcccc
Q 002435          374 PIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLI  453 (922)
Q Consensus       374 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~  453 (922)
                               .+++|+.|++++|.++++.                            ..++|+.|++++|.+....+.   
T Consensus       190 ---------~l~~L~~L~l~~n~l~~l~----------------------------~~~~L~~L~ls~n~l~~~~~~---  229 (597)
T 3oja_B          190 ---------LIPSLFHANVSYNLLSTLA----------------------------IPIAVEELDASHNSINVVRGP---  229 (597)
T ss_dssp             ---------GCTTCSEEECCSSCCSEEE----------------------------CCTTCSEEECCSSCCCEEECS---
T ss_pred             ---------hhhhhhhhhcccCcccccc----------------------------CCchhheeeccCCcccccccc---
Confidence                     2344444444444333211                            112344444444444311000   


Q ss_pred             ccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccc
Q 002435          454 EPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLE  533 (922)
Q Consensus       454 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~  533 (922)
                                                                                         +       .++|+
T Consensus       230 -------------------------------------------------------------------~-------~~~L~  235 (597)
T 3oja_B          230 -------------------------------------------------------------------V-------NVELT  235 (597)
T ss_dssp             -------------------------------------------------------------------C-------CSCCC
T ss_pred             -------------------------------------------------------------------c-------CCCCC
Confidence                                                                               0       13466


Q ss_pred             eEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCC
Q 002435          534 ILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNN  613 (922)
Q Consensus       534 ~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N  613 (922)
                      .|++++|.+++  +..+..++ +|+.|++++|.+++..|..|..+++|+.|+|++|++++ +|..+..+++|+.|+|++|
T Consensus       236 ~L~L~~n~l~~--~~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N  311 (597)
T 3oja_B          236 ILKLQHNNLTD--TAWLLNYP-GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN  311 (597)
T ss_dssp             EEECCSSCCCC--CGGGGGCT-TCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSS
T ss_pred             EEECCCCCCCC--ChhhccCC-CCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCC
Confidence            66666666664  24566666 67788888888877777788888888888888888876 4566677888888888888


Q ss_pred             cCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccc
Q 002435          614 QISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWN  678 (922)
Q Consensus       614 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~  678 (922)
                      +++ .+|.++..+++|++|+|++|++.+..     ...+++|+.|++++|+++|.....++..+.
T Consensus       312 ~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~  370 (597)
T 3oja_B          312 HLL-HVERNQPQFDRLENLYLDHNSIVTLK-----LSTHHTLKNLTLSHNDWDCNSLRALFRNVA  370 (597)
T ss_dssp             CCC-CCGGGHHHHTTCSEEECCSSCCCCCC-----CCTTCCCSEEECCSSCEEHHHHHHHTTTCC
T ss_pred             CCC-ccCcccccCCCCCEEECCCCCCCCcC-----hhhcCCCCEEEeeCCCCCChhHHHHHHHHh
Confidence            888 56777788888999999999887652     245789999999999998876666655443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=2.6e-30  Score=285.42  Aligned_cols=307  Identities=26%  Similarity=0.359  Sum_probs=191.1

Q ss_pred             ccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhH
Q 002435          106 GLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGN  185 (922)
Q Consensus       106 ~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~  185 (922)
                      .+..+++|++|+++++.+..  +| .+..+++|++|++++|.+.+ ++. +.++++|++|++++|.+..+        + 
T Consensus        39 ~~~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~--------~-  104 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI--------S-  104 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--------G-
T ss_pred             cchhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc--------h-
Confidence            34556777777777776642  33 36667777777777777643 333 67777777777777764322        1 


Q ss_pred             HHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCC
Q 002435          186 LVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCL  265 (922)
Q Consensus       186 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  265 (922)
                      .+.++++|++|++++|.+.+..+  +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+  +..+++|
T Consensus       105 ~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L  179 (347)
T 4fmz_A          105 ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDL  179 (347)
T ss_dssp             GGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTC
T ss_pred             HHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCC
Confidence            35666677777777766665322  6677777777777775543333 36677777777777777664433  6667777


Q ss_pred             cEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCC
Q 002435          266 KRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISEC  345 (922)
Q Consensus       266 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  345 (922)
                      ++|++++|.+.+. +. +..+++|++|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|++|++++|
T Consensus       180 ~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n  253 (347)
T 4fmz_A          180 YSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTN  253 (347)
T ss_dssp             SEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             CEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCC
Confidence            7777777777643 22 6667777777777777665443  6666777777777777664333  666777777777777


Q ss_pred             ccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCc
Q 002435          346 KFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFP  425 (922)
Q Consensus       346 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp  425 (922)
                      .+++.  +.+..+++|++|++++|.+++. +  . +..+++|++|++++|.+++..+..+..+++|+.|++++|.++.++
T Consensus       254 ~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~--~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  327 (347)
T 4fmz_A          254 QISDI--NAVKDLTKLKMLNVGSNQISDI-S--V-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR  327 (347)
T ss_dssp             CCCCC--GGGTTCTTCCEEECCSSCCCCC-G--G-GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCG
T ss_pred             ccCCC--hhHhcCCCcCEEEccCCccCCC-h--h-hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccccc
Confidence            76643  3466677777777777766642 2  1 255666666666666666655555555555555555555555444


Q ss_pred             ccccCCCCccEEECcCCCC
Q 002435          426 NFLKNQHYLEVLDLSCNKI  444 (922)
Q Consensus       426 ~~l~~~~~L~~L~Ls~n~l  444 (922)
                      . +..+++|++|++++|.+
T Consensus       328 ~-~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          328 P-LASLSKMDSADFANQVI  345 (347)
T ss_dssp             G-GGGCTTCSEESSSCC--
T ss_pred             C-hhhhhccceeehhhhcc
Confidence            3 44455555555555544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=8.9e-31  Score=310.28  Aligned_cols=348  Identities=20%  Similarity=0.159  Sum_probs=192.1

Q ss_pred             CCCCCCCCCCCCCCcc----ccceEecCCCCcEEEEECCCCCCCCcccCccccccCCCCCeeeCCCCCCCCCCCCc-ccc
Q 002435           59 KTASWKPEEANIDCCL----WDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPP-EII  133 (922)
Q Consensus        59 ~~~~w~~~~~~~~~c~----w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~-~l~  133 (922)
                      .+++|.+   +.+||.    |.++.|+.      .++-........  .  .-..+.+++.|++++|.+..  +|+ .+.
T Consensus         8 ~l~~~~~---~~~C~~~~~~~~c~~~~~------~i~~~~~~~~~~--~--~~l~l~~l~~l~l~~~~l~~--lp~~~~~   72 (597)
T 3oja_B            8 NVKPRQP---EYKCIDSNLQYDCVFYDV------HIDMQTQDVYFG--F--EDITLNNQKIVTFKNSTMRK--LPAALLD   72 (597)
T ss_dssp             ---CCCS---EECCCCC--CCSEEECSC------EECSSCCCCEES--C--SSGGGCCCSEEEESSCEESE--ECTHHHH
T ss_pred             cccCCCC---CCcCcccCcCceeEecCc------eecccccccccC--c--ccccCCCceEEEeeCCCCCC--cCHHHHc
Confidence            4678876   667774    66665542      112111111111  1  22345677777777776642  443 356


Q ss_pred             CCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccC
Q 002435          134 NLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLAN  213 (922)
Q Consensus       134 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~  213 (922)
                      .+++|++|+|++|.+.+..|..++.+++|++|+|++|.+                               ++..|..+++
T Consensus        73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-------------------------------~~~~~~~~~~  121 (597)
T 3oja_B           73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-------------------------------RYLPPHVFQN  121 (597)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-------------------------------CCCCTTTTTT
T ss_pred             cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcC-------------------------------CCCCHHHHcC
Confidence            677777777777777666566666666777777766653                               3333444445


Q ss_pred             CCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEE
Q 002435          214 LSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLE  293 (922)
Q Consensus       214 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  293 (922)
                      +++|++|+|++|.+.+..+..|+++++|++|+|++|.+++..|..|+++++|++|++++|.+++. +  +..+++|+.|+
T Consensus       122 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~  198 (597)
T 3oja_B          122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHAN  198 (597)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEE
T ss_pred             CCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhh
Confidence            55555555555555533333345555555555555555544444555555555555555555432 1  33345555555


Q ss_pred             ccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcC
Q 002435          294 LSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSG  373 (922)
Q Consensus       294 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  373 (922)
                      +++|.+.+     +...++|+.|++++|.+... +..+  .++|+.|++++|.+++  +..+..+++|+.|++++|.+.+
T Consensus       199 l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~  268 (597)
T 3oja_B          199 VSYNLLST-----LAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK  268 (597)
T ss_dssp             CCSSCCSE-----EECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE
T ss_pred             cccCcccc-----ccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC
Confidence            55554442     22334455555555555422 2211  2456666666666554  2445556666666666666554


Q ss_pred             ccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCcccc
Q 002435          374 PIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLI  453 (922)
Q Consensus       374 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~  453 (922)
                      ..+.. + ..+++|+.|++++|.+++++. .+..+++|+.|++++|.++.+|..+..+++|++|++++|.+++..+   .
T Consensus       269 ~~~~~-~-~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~---~  342 (597)
T 3oja_B          269 IMYHP-F-VKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL---S  342 (597)
T ss_dssp             EESGG-G-TTCSSCCEEECTTSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCC---C
T ss_pred             CCHHH-h-cCccCCCEEECCCCCCCCCCc-ccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcCh---h
Confidence            43322 2 455666666666666665432 2345667777777777777777777777888888888888775432   1


Q ss_pred             ccCCCCccEEEccCCccccc
Q 002435          454 EPSMQNFSYLNLSHNFLIGF  473 (922)
Q Consensus       454 ~~~l~~L~~L~L~~n~l~~~  473 (922)
                        .+++|+.|++++|++.+.
T Consensus       343 --~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          343 --THHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             --TTCCCSEEECCSSCEEHH
T ss_pred             --hcCCCCEEEeeCCCCCCh
Confidence              567788888888877653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=4.6e-30  Score=283.50  Aligned_cols=149  Identities=30%  Similarity=0.455  Sum_probs=67.1

Q ss_pred             CCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEE
Q 002435          213 NLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQL  292 (922)
Q Consensus       213 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  292 (922)
                      .+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++ ++ .+..+++|++|
T Consensus        42 ~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L  115 (347)
T 4fmz_A           42 ELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLREL  115 (347)
T ss_dssp             HHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEE
T ss_pred             hcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEE
Confidence            34444555555444442 12 24444555555555555443222  4455555555555555442 22 34455555555


Q ss_pred             EccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCc
Q 002435          293 ELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFS  372 (922)
Q Consensus       293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  372 (922)
                      ++++|.+.+..+  +..+++|+.|++++|.....++. +..+++|++|++++|.+.+..+  +..+++|++|++++|.+.
T Consensus       116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~  190 (347)
T 4fmz_A          116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE  190 (347)
T ss_dssp             ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred             ECcCCcccCchh--hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence            555555443222  44444444444444433322222 4444555555555555443221  444444555555544444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=9.6e-32  Score=293.21  Aligned_cols=283  Identities=19%  Similarity=0.216  Sum_probs=175.0

Q ss_pred             CCCCHHHHHHHHHHhhcCCcCCCCCcccccCCCCCCCCCCCCC-CCCCCCccccceEecC--------CCCcEEEEECCC
Q 002435           24 PLCHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPE-EANIDCCLWDGVECNE--------NTGHVIKLDLSN   94 (922)
Q Consensus        24 ~~~~~~~~~all~~k~~~~~~~~~~~~~~~~~~~~~~~~w~~~-~~~~~~c~w~gv~c~~--------~~~~v~~L~L~~   94 (922)
                      ..+..+|+.||++||+++..++..           ...+|... ....++|.|.|+.|..        ...+|+.|+|++
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~-----------~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~   90 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNR-----------WHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS   90 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTT-----------HHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES
T ss_pred             cccCchHHHHHHHHHHhccCCchh-----------hhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccC
Confidence            456778999999999998544331           35678410 0156899999999952        235677777777


Q ss_pred             CCCCCcccCccccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCC
Q 002435           95 SCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYN  174 (922)
Q Consensus        95 ~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~  174 (922)
                      +.+.. ++.  .++++++|++|+|++|.+.  .+|..++.+++|++|+|++|.+. .+|..++++++|++|++++|.+. 
T Consensus        91 n~l~~-lp~--~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~-  163 (328)
T 4fcg_A           91 VPLPQ-FPD--QAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPEL-  163 (328)
T ss_dssp             SCCSS-CCS--CGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTC-
T ss_pred             CCchh-cCh--hhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCc-
Confidence            77763 333  5666777777777777775  36777777777777777777775 66777777777777777765422 


Q ss_pred             cccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCC
Q 002435          175 LIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGE  254 (922)
Q Consensus       175 ~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  254 (922)
                            +.+|..+..      .         ..+..+.++++|++|++++|+++ .+|..++.+++|++|++++|.+++ 
T Consensus       164 ------~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-  220 (328)
T 4fcg_A          164 ------TELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-  220 (328)
T ss_dssp             ------CCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred             ------cccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-
Confidence                  112211111      0         00011223566666666666655 555556666666666666666653 


Q ss_pred             cccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCC
Q 002435          255 LPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNL  334 (922)
Q Consensus       255 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  334 (922)
                      +|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++
T Consensus       221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L  300 (328)
T 4fcg_A          221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL  300 (328)
T ss_dssp             CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred             CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence            34455666666666666666665666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCCceEecCCCcc
Q 002435          335 RSLEGLDISECKF  347 (922)
Q Consensus       335 ~~L~~L~Ls~n~l  347 (922)
                      ++|+.+++..+.+
T Consensus       301 ~~L~~l~l~~~~~  313 (328)
T 4fcg_A          301 PANCIILVPPHLQ  313 (328)
T ss_dssp             CTTCEEECCGGGS
T ss_pred             cCceEEeCCHHHH
Confidence            6666666665544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=4.1e-32  Score=312.49  Aligned_cols=136  Identities=22%  Similarity=0.237  Sum_probs=79.6

Q ss_pred             CCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCC----CCchhccCCCCCCEEeccCccCCccCcccc
Q 002435          160 SNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISS----PIPHSLANLSSLTLLSLSGCELRGRIPSLL  235 (922)
Q Consensus       160 ~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l  235 (922)
                      ++|++||+++|++..      ..+...+..+++|++|++++|.+++    .++..+..+++|++|++++|.+.+..+..+
T Consensus         3 ~~l~~L~Ls~~~l~~------~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l   76 (461)
T 1z7x_W            3 LDIQSLDIQCEELSD------ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCV   76 (461)
T ss_dssp             EEEEEEEEESCCCCH------HHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHH
T ss_pred             ccceehhhhhcccCc------hhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHH
Confidence            467888888877432      1233446677777777777777764    235556666777777777777654333222


Q ss_pred             -CCCC----CCCEEeCcCCCCCC----CcccccCCCCCCcEEEcccCCCCCCchhhhh-----CCCCCCEEEccCCCCCC
Q 002435          236 -GNLT----KLMYLDLSFNNLLG----ELPTSIGNLDCLKRLDISWNELSGELPASIG-----NLASLEQLELSLNRFRG  301 (922)
Q Consensus       236 -~~l~----~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~  301 (922)
                       ..++    +|++|++++|.+++    .++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++
T Consensus        77 ~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  156 (461)
T 1z7x_W           77 LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA  156 (461)
T ss_dssp             HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred             HHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence             2233    56677777666653    3455666666666666666666543333222     13455555555555543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=2.3e-32  Score=314.62  Aligned_cols=389  Identities=19%  Similarity=0.140  Sum_probs=209.7

Q ss_pred             CCCCEEeccCccCCccCccc-cCCCCCCCEEeCcCCCCCCC----cccccCCCCCCcEEEcccCCCCCCchhhh-hCCC-
Q 002435          215 SSLTLLSLSGCELRGRIPSL-LGNLTKLMYLDLSFNNLLGE----LPTSIGNLDCLKRLDISWNELSGELPASI-GNLA-  287 (922)
Q Consensus       215 ~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~-  287 (922)
                      ++|++|++++|+++...... +..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+..+ ..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            34566666666655332222 45556666666666665532    33445555556666666555543322222 2233 


Q ss_pred             ---CCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhc-----CCC
Q 002435          288 ---SLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLR-----NLA  359 (922)
Q Consensus       288 ---~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-----~l~  359 (922)
                         +|++|++++|.++....                    ..++..+..+++|++|++++|.+++..+..+.     ..+
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~--------------------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~  142 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGC--------------------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC  142 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGH--------------------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred             CCCceeEEEccCCCCCHHHH--------------------HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence               35555555555442110                    12234444444444444444444332222111     123


Q ss_pred             CccEEEccCCCCcCccc--hhhhhhccCCcceEeCcCcccccccccccc-----CCCCccEEEecCCCCCC-----Cccc
Q 002435          360 QLKFLEFSHNNFSGPID--LDMFLVNFKHLEHLSLSSNRLSLFTKAIFN-----TSQKFNFVGLRSCNLNE-----FPNF  427 (922)
Q Consensus       360 ~L~~L~L~~n~l~~~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~~~~L~~L~L~~~~l~~-----lp~~  427 (922)
                      +|++|++++|.+++...  ....+..+++|++|++++|.+.......+.     ..++|+.|++++|.++.     ++..
T Consensus       143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  222 (461)
T 1z7x_W          143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI  222 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred             cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence            45555555554442211  011123345555555555554433222211     13345555555555443     3445


Q ss_pred             ccCCCCccEEECcCCCCCCCCCccccc---cCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCC
Q 002435          428 LKNQHYLEVLDLSCNKIHGKVPKWLIE---PSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPP  504 (922)
Q Consensus       428 l~~~~~L~~L~Ls~n~l~~~~p~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~  504 (922)
                      +..+++|++|++++|++.+.....+..   ..+++|++|++++|.++....                             
T Consensus       223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~-----------------------------  273 (461)
T 1z7x_W          223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC-----------------------------  273 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH-----------------------------
T ss_pred             HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHH-----------------------------
Confidence            556666666666666665432111110   023444444444444322100                             


Q ss_pred             CCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhc----cCcccEEEcCCCcccCC----Cccccc
Q 002435          505 PQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNF----SDHLSILDLQHNKFCGS----IPQTFL  576 (922)
Q Consensus       505 ~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l----~~~L~~L~Ls~N~l~~~----~p~~~~  576 (922)
                                    ..++..+.. +++|++|++++|.+++..+..+...    .++|++|++++|.+++.    ++..+.
T Consensus       274 --------------~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  338 (461)
T 1z7x_W          274 --------------GDLCRVLRA-KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA  338 (461)
T ss_dssp             --------------HHHHHHHHH-CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH
T ss_pred             --------------HHHHHHHhh-CCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHh
Confidence                          013444444 7788888888888875544444433    12688899998888765    456677


Q ss_pred             CCCCccEEecCCCcccccCCccccC-----CCCCcEEECCCCcCcc----CcchhhcCCCCCCEEEcCCCcccccCCCCC
Q 002435          577 SGRSLMMIDLSDNLLQGRIPRSLVN-----CSSLKFLDLGNNQISG----TFPSWLGTLRELNVLILKSNKLHGMIREPN  647 (922)
Q Consensus       577 ~l~~L~~L~Ls~N~l~~~~~~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~  647 (922)
                      .+++|++|++++|++++..+..+..     .++|++|++++|++++    .+|..+..+++|++|++++|++++......
T Consensus       339 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l  418 (461)
T 1z7x_W          339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL  418 (461)
T ss_dssp             HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHH
T ss_pred             hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHH
Confidence            7889999999999888765554443     6789999999999986    778888889999999999998875411000


Q ss_pred             ---CCCCCCCccEEEccCCcCCC
Q 002435          648 ---TGCGFPELRIIDLSNNRFTG  667 (922)
Q Consensus       648 ---~~~~l~~L~~LdLs~N~l~g  667 (922)
                         ......+|+.|++.++.+..
T Consensus       419 ~~~l~~~~~~L~~L~~~~~~~~~  441 (461)
T 1z7x_W          419 VESVRQPGCLLEQLVLYDIYWSE  441 (461)
T ss_dssp             HHHHTSTTCCCCEEECTTCCCCH
T ss_pred             HHHhccCCcchhheeecccccCH
Confidence               00123468888888877664

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.2e-28  Score=269.95  Aligned_cols=288  Identities=22%  Similarity=0.238  Sum_probs=203.8

Q ss_pred             CccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceE
Q 002435          410 KFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTL  489 (922)
Q Consensus       410 ~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L  489 (922)
                      .++.++++++.++.+|..+  .++|++|++++|.+++..|..+.  .+++|++|++++|.+++                 
T Consensus        34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~-----------------   92 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFK--GLQHLYALVLVNNKISK-----------------   92 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCE-----------------
T ss_pred             cCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHhh--CCCCCcEEECCCCccCc-----------------
Confidence            4555666666666665543  24566666666666655444444  45555555555544432                 


Q ss_pred             eccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccC
Q 002435          490 DLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCG  569 (922)
Q Consensus       490 ~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~  569 (922)
                                                    ..|..+.. +++|++|++++|.++ .+|..+.  + +|++|++++|++++
T Consensus        93 ------------------------------~~~~~~~~-l~~L~~L~L~~n~l~-~l~~~~~--~-~L~~L~l~~n~i~~  137 (332)
T 2ft3_A           93 ------------------------------IHEKAFSP-LRKLQKLYISKNHLV-EIPPNLP--S-SLVELRIHDNRIRK  137 (332)
T ss_dssp             ------------------------------ECGGGSTT-CTTCCEEECCSSCCC-SCCSSCC--T-TCCEEECCSSCCCC
T ss_pred             ------------------------------cCHhHhhC-cCCCCEEECCCCcCC-ccCcccc--c-cCCEEECCCCccCc
Confidence                                          22333333 677888888888877 4454443  3 68888888888887


Q ss_pred             CCcccccCCCCccEEecCCCccc--ccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCC
Q 002435          570 SIPQTFLSGRSLMMIDLSDNLLQ--GRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPN  647 (922)
Q Consensus       570 ~~p~~~~~l~~L~~L~Ls~N~l~--~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~  647 (922)
                      ..+..|..+++|++|++++|.++  +..+..+..+ +|++|++++|++++ +|..+.  ++|++|++++|++.+..+..+
T Consensus       138 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l  213 (332)
T 2ft3_A          138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDL  213 (332)
T ss_dssp             CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSS
T ss_pred             cCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHh
Confidence            77777888888888888888885  3667777777 88888888888886 444433  678888888888887765544


Q ss_pred             CCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccccc
Q 002435          648 TGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKV  727 (922)
Q Consensus       648 ~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  727 (922)
                        ..+++|+.|++++|++++..+.. +..                                                   
T Consensus       214 --~~l~~L~~L~L~~N~l~~~~~~~-~~~---------------------------------------------------  239 (332)
T 2ft3_A          214 --LRYSKLYRLGLGHNQIRMIENGS-LSF---------------------------------------------------  239 (332)
T ss_dssp             --TTCTTCSCCBCCSSCCCCCCTTG-GGG---------------------------------------------------
T ss_pred             --cCCCCCCEEECCCCcCCcCChhH-hhC---------------------------------------------------
Confidence              56788888888888887544322 211                                                   


Q ss_pred             cccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCC------CCCCEEeCCCCcCc--ccCcccccC
Q 002435          728 PNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNL------TGLESLDLSNNKFS--GQIPQQLVD  799 (922)
Q Consensus       728 ~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L------~~L~~L~Ls~N~l~--g~ip~~l~~  799 (922)
                      .+.|+.|+|++|+++ .+|..+..+++|+.|+|++|++++..+..|...      ..|+.|++++|.+.  +..|..+..
T Consensus       240 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~  318 (332)
T 2ft3_A          240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC  318 (332)
T ss_dssp             CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTT
T ss_pred             CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccc
Confidence            245788899999998 788889999999999999999998888877654      67899999999988  778888999


Q ss_pred             CCCCCeEeccCCc
Q 002435          800 LTFLEFFNVSNNN  812 (922)
Q Consensus       800 L~~L~~L~ls~N~  812 (922)
                      ++.|+.+++++|+
T Consensus       319 l~~L~~l~l~~n~  331 (332)
T 2ft3_A          319 VTDRLAIQFGNYK  331 (332)
T ss_dssp             BCCSTTEEC----
T ss_pred             cchhhhhhccccc
Confidence            9999999999885

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=4.9e-28  Score=265.04  Aligned_cols=82  Identities=18%  Similarity=0.194  Sum_probs=52.6

Q ss_pred             cceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccC------CCCCCEEeCCCCcCcc--cCcccccCCC
Q 002435          730 FLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGN------LTGLESLDLSNNKFSG--QIPQQLVDLT  801 (922)
Q Consensus       730 ~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~------L~~L~~L~Ls~N~l~g--~ip~~l~~L~  801 (922)
                      .|+.|+|++|+++ .+|..+..+++|++|+|++|++++..+..|..      ...|+.|++++|.+..  ..|..+..+.
T Consensus       241 ~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~  319 (330)
T 1xku_A          241 HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY  319 (330)
T ss_dssp             TCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCC
T ss_pred             CCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccccc
Confidence            3555666666666 55666666777777777777777666666643      3667777777777753  5566777777


Q ss_pred             CCCeEeccCCc
Q 002435          802 FLEFFNVSNNN  812 (922)
Q Consensus       802 ~L~~L~ls~N~  812 (922)
                      .++.+++++|+
T Consensus       320 ~l~~l~L~~N~  330 (330)
T 1xku_A          320 VRAAVQLGNYK  330 (330)
T ss_dssp             CGGGEEC----
T ss_pred             ceeEEEecccC
Confidence            77777777774

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=5.8e-28  Score=264.42  Aligned_cols=269  Identities=20%  Similarity=0.211  Sum_probs=200.4

Q ss_pred             CCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcC
Q 002435          111 VHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKL  190 (922)
Q Consensus       111 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l  190 (922)
                      +.|++|+|++|.+.+. .+..++++++|++|+|++|.+.+..|..++++++|++|++++|++..++.        .+  .
T Consensus        52 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~--------~~--~  120 (330)
T 1xku_A           52 PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE--------KM--P  120 (330)
T ss_dssp             TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCS--------SC--C
T ss_pred             CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccCh--------hh--c
Confidence            6899999999998753 44579999999999999999988889999999999999999998754322        11  2


Q ss_pred             CCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCc--cCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEE
Q 002435          191 TNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRG--RIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRL  268 (922)
Q Consensus       191 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  268 (922)
                      ++|++|++++|.+.+..+..+.++++|++|++++|.+..  ..+..+.++++|++|++++|.++. +|..+.  ++|++|
T Consensus       121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L  197 (330)
T 1xku_A          121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTEL  197 (330)
T ss_dssp             TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEE
T ss_pred             ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEE
Confidence            688899999988888777888888899999998888853  667778888888888888888874 444443  788888


Q ss_pred             EcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccC
Q 002435          269 DISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFS  348 (922)
Q Consensus       269 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  348 (922)
                      ++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|+++
T Consensus       198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~  276 (330)
T 1xku_A          198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  276 (330)
T ss_dssp             ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence            88888888777778888888888888888888777777778888888888888877 66777777888888888888887


Q ss_pred             ccCchhhcC------CCCccEEEccCCCCcC-ccchhhhhhccCCcceEeCcCc
Q 002435          349 SQIPSSLRN------LAQLKFLEFSHNNFSG-PIDLDMFLVNFKHLEHLSLSSN  395 (922)
Q Consensus       349 ~~~~~~l~~------l~~L~~L~L~~n~l~~-~~~~~~~~~~l~~L~~L~Ls~n  395 (922)
                      +..+..+..      .+.++.+++++|.+.. .++...| ..+..++.+++++|
T Consensus       277 ~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f-~~~~~l~~l~L~~N  329 (330)
T 1xku_A          277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF-RCVYVRAAVQLGNY  329 (330)
T ss_dssp             CCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG-TTCCCGGGEEC---
T ss_pred             ccChhhcCCcccccccccccceEeecCcccccccCcccc-ccccceeEEEeccc
Confidence            655544432      2455566666665532 1222222 34455555555544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.8e-27  Score=260.60  Aligned_cols=292  Identities=22%  Similarity=0.212  Sum_probs=172.0

Q ss_pred             CCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEe
Q 002435          312 RLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLS  391 (922)
Q Consensus       312 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~  391 (922)
                      +++.++++++.++ .+|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+ ..+ ..+++|++|+
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~-~~l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE-KAF-SPLRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG-GGS-TTCTTCCEEE
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH-hHh-hCcCCCCEEE
Confidence            4666666666655 4444432  456666666666665555555666666666666665553222 222 4455555555


Q ss_pred             CcCccccccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccc
Q 002435          392 LSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLI  471 (922)
Q Consensus       392 Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~  471 (922)
                      +++|.++                        .+|..+.  ++|++|++++|++.+..+..+.  .+++|++|++++|.++
T Consensus       109 L~~n~l~------------------------~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~--~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          109 ISKNHLV------------------------EIPPNLP--SSLVELRIHDNRIRKVPKGVFS--GLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             CCSSCCC------------------------SCCSSCC--TTCCEEECCSSCCCCCCSGGGS--SCSSCCEEECCSCCCB
T ss_pred             CCCCcCC------------------------ccCcccc--ccCCEEECCCCccCccCHhHhC--CCccCCEEECCCCccc
Confidence            5555544                        4444332  4555555555555544444343  4555666666555554


Q ss_pred             cccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhh
Q 002435          472 GFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLD  551 (922)
Q Consensus       472 ~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~  551 (922)
                      ........+...                      +++.+++++|.+++ +|..+   .++|++|++++|.+++..+..+.
T Consensus       161 ~~~~~~~~~~~l----------------------~L~~L~l~~n~l~~-l~~~~---~~~L~~L~l~~n~i~~~~~~~l~  214 (332)
T 2ft3_A          161 NSGFEPGAFDGL----------------------KLNYLRISEAKLTG-IPKDL---PETLNELHLDHNKIQAIELEDLL  214 (332)
T ss_dssp             GGGSCTTSSCSC----------------------CCSCCBCCSSBCSS-CCSSS---CSSCSCCBCCSSCCCCCCTTSST
T ss_pred             cCCCCcccccCC----------------------ccCEEECcCCCCCc-cCccc---cCCCCEEECCCCcCCccCHHHhc
Confidence            321111111111                      23334444444432 33332   24677778888887777767777


Q ss_pred             hccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcC------
Q 002435          552 NFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGT------  625 (922)
Q Consensus       552 ~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~------  625 (922)
                      .++ +|++|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..      
T Consensus       215 ~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~  292 (332)
T 2ft3_A          215 RYS-KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK  292 (332)
T ss_dssp             TCT-TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSS
T ss_pred             CCC-CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccc
Confidence            776 6888888888888777777778888888888888887 56777888888888888888888776666654      


Q ss_pred             CCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCc
Q 002435          626 LRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNR  664 (922)
Q Consensus       626 l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~  664 (922)
                      .+.|+.|++++|++......+..+..+++|+.+++++|+
T Consensus       293 ~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          293 RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            356788888888876322122233567888888888774

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=4.3e-28  Score=268.12  Aligned_cols=276  Identities=16%  Similarity=0.129  Sum_probs=220.9

Q ss_pred             ceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCc
Q 002435          487 FTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNK  566 (922)
Q Consensus       487 ~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~  566 (922)
                      ...+++++.++..+...+++++.|++++|.+++..+..+.. +++|++|++++|.+++..|..|.+++ +|++|++++|+
T Consensus        34 ~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~  111 (353)
T 2z80_A           34 GICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQR-CVNLQALVLTSNGINTIEEDSFSSLG-SLEHLDLSYNY  111 (353)
T ss_dssp             SEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSC
T ss_pred             eEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhcc-CCCCCEEECCCCccCccCHhhcCCCC-CCCEEECCCCc
Confidence            34677777777666666778899999999888644445555 88999999999999988888888887 79999999999


Q ss_pred             ccCCCcccccCCCCccEEecCCCcccccCC-ccccCCCCCcEEECCCC-cCccCcchhhcCCCCCCEEEcCCCcccccCC
Q 002435          567 FCGSIPQTFLSGRSLMMIDLSDNLLQGRIP-RSLVNCSSLKFLDLGNN-QISGTFPSWLGTLRELNVLILKSNKLHGMIR  644 (922)
Q Consensus       567 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~  644 (922)
                      +++..+..|..+++|++|++++|++++..+ ..+..+++|++|++++| .+.+..+..|..+++|++|++++|++.+..|
T Consensus       112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  191 (353)
T 2z80_A          112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP  191 (353)
T ss_dssp             CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence            987766668889999999999999986554 57888999999999998 5777777889999999999999999988877


Q ss_pred             CCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeeccccccc
Q 002435          645 EPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSY  724 (922)
Q Consensus       645 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  724 (922)
                      ..+  ..+++|+.|++++|++. .+|..++..                                                
T Consensus       192 ~~l--~~l~~L~~L~l~~n~l~-~~~~~~~~~------------------------------------------------  220 (353)
T 2z80_A          192 KSL--KSIQNVSHLILHMKQHI-LLLEIFVDV------------------------------------------------  220 (353)
T ss_dssp             TTT--TTCSEEEEEEEECSCST-THHHHHHHH------------------------------------------------
T ss_pred             HHH--hccccCCeecCCCCccc-cchhhhhhh------------------------------------------------
Confidence            665  67889999999999875 444332221                                                


Q ss_pred             ccccccceEEEeccccccccCccccc---ccCCCCEEeCCCccccc----cCCccccCCCCCCEEeCCCCcCcccCcccc
Q 002435          725 DKVPNFLTGVILSSNRFDGEIPTSIA---NLKGLQVLSLANNSLHG----HILSCLGNLTGLESLDLSNNKFSGQIPQQL  797 (922)
Q Consensus       725 ~~~~~~l~~L~Ls~N~l~g~ip~~~~---~l~~L~~L~Ls~N~l~~----~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l  797 (922)
                         .+.|+.|+|++|++++..+..+.   ....++.++|++|.+++    .+|+.++++++|++|||++|+++...+..+
T Consensus       221 ---~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~  297 (353)
T 2z80_A          221 ---TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIF  297 (353)
T ss_dssp             ---TTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             ---cccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHH
Confidence               34588899999999887665544   35678889999998887    478889999999999999999995444446


Q ss_pred             cCCCCCCeEeccCCccccCCC
Q 002435          798 VDLTFLEFFNVSNNNLTGPIP  818 (922)
Q Consensus       798 ~~L~~L~~L~ls~N~lsg~iP  818 (922)
                      .++++|++|++++|++.|.+|
T Consensus       298 ~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          298 DRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             TTCTTCCEEECCSSCBCCCHH
T ss_pred             hcCCCCCEEEeeCCCccCcCC
Confidence            899999999999999998877

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=1.7e-28  Score=266.11  Aligned_cols=249  Identities=20%  Similarity=0.197  Sum_probs=206.1

Q ss_pred             CCCceeeccCCcccCcCChhhhhcCCccceEEccCccCC-CCCCchhh-------hccCcccEEEcCCCcccCCCcccc-
Q 002435          505 PQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLS-GLLPQCLD-------NFSDHLSILDLQHNKFCGSIPQTF-  575 (922)
Q Consensus       505 ~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~-~~~p~~l~-------~l~~~L~~L~Ls~N~l~~~~p~~~-  575 (922)
                      .+++.+++++|.+  .+|..+..   .|+.|++++|.++ ..+|..+.       +++ +|++|++++|++++.+|..+ 
T Consensus        43 ~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           43 RSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGIS-GLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTS-CCCEEEEEEEBCBSCCCCCSS
T ss_pred             CCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcC-CccEEEccCCcccchhHHHHH
Confidence            3567778888888  78887776   3899999999994 45666554       566 79999999999999888876 


Q ss_pred             -cCCCCccEEecCCCcccccCCccccCC-----CCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccC--CCCC
Q 002435          576 -LSGRSLMMIDLSDNLLQGRIPRSLVNC-----SSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMI--REPN  647 (922)
Q Consensus       576 -~~l~~L~~L~Ls~N~l~~~~~~~l~~l-----~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--~~~~  647 (922)
                       ..+++|++|+|++|++++. |..+..+     ++|++|+|++|++++..|..|+.+++|++|++++|++.+.+  +...
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence             8899999999999999987 8888877     89999999999999988899999999999999999987752  2233


Q ss_pred             CCCCCCCccEEEccCCcCCCC--CChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccc
Q 002435          648 TGCGFPELRIIDLSNNRFTGK--LPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYD  725 (922)
Q Consensus       648 ~~~~l~~L~~LdLs~N~l~g~--ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  725 (922)
                      .+..+++|+.|++++|++++.  ++...+.                                                  
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~--------------------------------------------------  225 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETPSGVCSALAA--------------------------------------------------  225 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCHHHHHHHHHH--------------------------------------------------
T ss_pred             HhccCCCCCEEECCCCcCcchHHHHHHHHh--------------------------------------------------
Confidence            336789999999999998731  1111111                                                  


Q ss_pred             cccccceEEEeccccccccCc-ccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCC
Q 002435          726 KVPNFLTGVILSSNRFDGEIP-TSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLE  804 (922)
Q Consensus       726 ~~~~~l~~L~Ls~N~l~g~ip-~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~  804 (922)
                       ..+.|+.|||++|++++.+| ..+..+++|++|+|++|+|+ .+|..+.  ++|+.|||++|+|++. |. +..+++|+
T Consensus       226 -~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~  299 (312)
T 1wwl_A          226 -ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVG  299 (312)
T ss_dssp             -TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEE
T ss_pred             -cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCC
Confidence             12568999999999999886 55777899999999999999 7788777  8999999999999987 66 99999999


Q ss_pred             eEeccCCccccC
Q 002435          805 FFNVSNNNLTGP  816 (922)
Q Consensus       805 ~L~ls~N~lsg~  816 (922)
                      +|++++|+++++
T Consensus       300 ~L~L~~N~l~~~  311 (312)
T 1wwl_A          300 NLSLKGNPFLDS  311 (312)
T ss_dssp             EEECTTCTTTCC
T ss_pred             EEeccCCCCCCC
Confidence            999999999864

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=2.9e-27  Score=261.40  Aligned_cols=283  Identities=20%  Similarity=0.219  Sum_probs=223.3

Q ss_pred             CCCCccccceEecCCCCcEEEEECCCCCCCCcccCccccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCC
Q 002435           69 NIDCCLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGF  148 (922)
Q Consensus        69 ~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l  148 (922)
                      ...+|.|.|+ |+          .++++++... .  .+  .++|++|++++|.+.+. .+..+.++++|++|++++|.+
T Consensus        26 ~~~~C~~~~~-c~----------~~~~~l~~iP-~--~~--~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l   88 (353)
T 2z80_A           26 ASLSCDRNGI-CK----------GSSGSLNSIP-S--GL--TEAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGI   88 (353)
T ss_dssp             -CCEECTTSE-EE----------CCSTTCSSCC-T--TC--CTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCC
T ss_pred             cCCCCCCCeE-ee----------CCCCCccccc-c--cc--cccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCcc
Confidence            4567899887 64          3455555442 1  33  25899999999998643 344799999999999999999


Q ss_pred             CCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCc-hhccCCCCCCEEeccCcc-
Q 002435          149 FGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIP-HSLANLSSLTLLSLSGCE-  226 (922)
Q Consensus       149 ~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~Ls~n~-  226 (922)
                      .+..|..++++++|++|++++|+++.+.       +..+.++++|++|++++|.+++..+ ..+.++++|++|++++|. 
T Consensus        89 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~  161 (353)
T 2z80_A           89 NTIEEDSFSSLGSLEHLDLSYNYLSNLS-------SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT  161 (353)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSSCC-------HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS
T ss_pred             CccCHhhcCCCCCCCEEECCCCcCCcCC-------HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcc
Confidence            8887888999999999999999864322       2458889999999999999986544 478899999999999994 


Q ss_pred             CCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCccc
Q 002435          227 LRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHS  306 (922)
Q Consensus       227 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  306 (922)
                      +.+..+..+.++++|++|++++|.+++..|..+..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..
T Consensus       162 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  241 (353)
T 2z80_A          162 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE  241 (353)
T ss_dssp             CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-
T ss_pred             ccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccc
Confidence            66666778999999999999999999888999999999999999999987443344556899999999999998766554


Q ss_pred             cc---CCCCCcEEEeeccCCCC----cccccccCCCCCceEecCCCccCccCchh-hcCCCCccEEEccCCCCcCccc
Q 002435          307 MG---NFTRLYWLSLASNDFSG----ELPASFGNLRSLEGLDISECKFSSQIPSS-LRNLAQLKFLEFSHNNFSGPID  376 (922)
Q Consensus       307 l~---~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~  376 (922)
                      +.   ..+.++.++++++.+.+    .+|..+..+++|++|++++|+++. +|.. +..+++|++|++++|.+.+..+
T Consensus       242 l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          242 LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             -----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            43   45678888888888775    367777888888888888888884 4444 5788888888888888876554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.9e-29  Score=299.94  Aligned_cols=230  Identities=17%  Similarity=0.137  Sum_probs=108.1

Q ss_pred             CccccCCCCCCEEECCCCCC---CCcCchhhc------------CCCCCCEEEcCCCCCCCcccccCCChhHHHhc-CC-
Q 002435          129 PPEIINLSRLSYLNLSSAGF---FGQIPSEIL------------ELSNLVSLDLSHNSYYNLIELKEPNLGNLVKK-LT-  191 (922)
Q Consensus       129 p~~l~~l~~L~~L~Ls~n~l---~~~~p~~l~------------~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~-l~-  191 (922)
                      +..+.++++|++|+|+++..   .+.+|..++            .+++|++|+|++|.+..       ..+..+.. ++ 
T Consensus        66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~-------~~~~~l~~~~~~  138 (592)
T 3ogk_B           66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSD-------LDLDRLAKARAD  138 (592)
T ss_dssp             HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCH-------HHHHHHHHHHGG
T ss_pred             HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecH-------HHHHHHHHhccc
Confidence            44566788899999987642   123332222            45666666666664321       11222222 22 


Q ss_pred             CCCEEEcCCCc-CCC-CCchhccCCCCCCEEeccCccCCcc----CccccCCCCCCCEEeCcCCCCCC----CcccccCC
Q 002435          192 NLKELALGGVT-ISS-PIPHSLANLSSLTLLSLSGCELRGR----IPSLLGNLTKLMYLDLSFNNLLG----ELPTSIGN  261 (922)
Q Consensus       192 ~L~~L~L~~n~-~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~----~~~~~l~~  261 (922)
                      +|++|++++|. ++. .++.....+++|++|+|++|.+.+.    ++..+..+++|++|++++|.+++    .++..+.+
T Consensus       139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~  218 (592)
T 3ogk_B          139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN  218 (592)
T ss_dssp             GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred             cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence            26666665554 111 1112223455666666666655433    22233445556666666655542    22333344


Q ss_pred             CCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCC---CCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCc
Q 002435          262 LDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFR---GKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLE  338 (922)
Q Consensus       262 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  338 (922)
                      +++|++|++++|.+.+ ++..+.++++|++|+++.....   ...+..+..+++|+.++++++.. +.+|..+..+++|+
T Consensus       219 ~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~  296 (592)
T 3ogk_B          219 CRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIR  296 (592)
T ss_dssp             CTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCC
T ss_pred             CCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCc
Confidence            5555555555555553 4455555555555555532211   12223334444555555544321 23444444444555


Q ss_pred             eEecCCCccCccCc-hhhcCCCCccEEEcc
Q 002435          339 GLDISECKFSSQIP-SSLRNLAQLKFLEFS  367 (922)
Q Consensus       339 ~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~  367 (922)
                      +|++++|.+++... ..+..+++|++|+++
T Consensus       297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          297 KLDLLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             EEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             EEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence            55555544433221 223444444444444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=3.7e-29  Score=297.49  Aligned_cols=462  Identities=15%  Similarity=0.069  Sum_probs=297.0

Q ss_pred             CCccccceEecCCCCcEEEEECCCCCCCCcccCccccccCCCCCeeeCCCCCCCC--CCCCcccc------------CCC
Q 002435           71 DCCLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFIC--SEIPPEII------------NLS  136 (922)
Q Consensus        71 ~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~--~~~p~~l~------------~l~  136 (922)
                      -|++|.++.+...    ..+.+... ....++  ..+.++++|++|+|+++....  ..+|..++            .++
T Consensus        40 vck~W~~~~~~~~----~~l~~~~~-~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~  112 (592)
T 3ogk_B           40 VCRRWFKIDSETR----EHVTMALC-YTATPD--RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLR  112 (592)
T ss_dssp             SCHHHHHHHHHHC----CEEEESCG-GGSCHH--HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCT
T ss_pred             HhHHHHHhhhccc----cEEEEeec-cccChH--HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCC
Confidence            3557999865422    12233221 122221  256678999999998864210  11333333            789


Q ss_pred             CCCEEECCCCCCCCcCchhhcC-CC-CCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCC----Cchh
Q 002435          137 RLSYLNLSSAGFFGQIPSEILE-LS-NLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSP----IPHS  210 (922)
Q Consensus       137 ~L~~L~Ls~n~l~~~~p~~l~~-l~-~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~----~~~~  210 (922)
                      +|++|+|++|.+.+..+..++. ++ +|++|++++|.     ......++....++++|++|++++|.+++.    ++..
T Consensus       113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~-----~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~  187 (592)
T 3ogk_B          113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS-----GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL  187 (592)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE-----EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred             CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC-----CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence            9999999999988777777776 44 49999999985     122244666677999999999999998766    4445


Q ss_pred             ccCCCCCCEEeccCccCC----ccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCC---CCchhhh
Q 002435          211 LANLSSLTLLSLSGCELR----GRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELS---GELPASI  283 (922)
Q Consensus       211 l~~l~~L~~L~Ls~n~l~----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~l  283 (922)
                      ...+++|++|++++|.+.    +.++..+.++++|++|++++|.+.+ ++..+..+++|++|+++.....   +..+..+
T Consensus       188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l  266 (592)
T 3ogk_B          188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL  266 (592)
T ss_dssp             HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred             HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence            678899999999999987    3445556789999999999999885 6788999999999999864332   2344567


Q ss_pred             hCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCccc-ccccCCCCCceEecCCCccCccCchhhcCCCCcc
Q 002435          284 GNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELP-ASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLK  362 (922)
Q Consensus       284 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  362 (922)
                      ..+++|+.|+++++. ....|..+..+++|++|++++|.+++... ..+..+++|++|+++++...+.++.....+++|+
T Consensus       267 ~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~  345 (592)
T 3ogk_B          267 VFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLK  345 (592)
T ss_dssp             CCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred             hccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCC
Confidence            888999999998863 34667788889999999999999765433 4468899999999994433333444557789999


Q ss_pred             EEEccC-----------CCCcCccchhhhhhccCCcceEeCcCccccccccccccC-CCCccEEEec----CCCCCCCcc
Q 002435          363 FLEFSH-----------NNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNT-SQKFNFVGLR----SCNLNEFPN  426 (922)
Q Consensus       363 ~L~L~~-----------n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~~~L~~L~L~----~~~l~~lp~  426 (922)
                      +|++++           +.+++ .....+...+++|++|+++.+.+++.....+.. +++|+.|+++    .+.++..|.
T Consensus       346 ~L~L~~g~~~~~~~~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~  424 (592)
T 3ogk_B          346 RLRIERGADEQGMEDEEGLVSQ-RGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL  424 (592)
T ss_dssp             EEEEECCCCSSTTSSTTCCCCH-HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred             EEEeecCccccccccccCccCH-HHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence            999994           44442 222233356888888888877777654444332 5555555554    233333211


Q ss_pred             cccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCC
Q 002435          427 FLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQ  506 (922)
Q Consensus       427 ~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~  506 (922)
                      .                  ..++..+.  .+++|++|++++|.-                                    
T Consensus       425 ~------------------~~~~~~~~--~~~~L~~L~L~~~~~------------------------------------  448 (592)
T 3ogk_B          425 D------------------NGVRSLLI--GCKKLRRFAFYLRQG------------------------------------  448 (592)
T ss_dssp             H------------------HHHHHHHH--HCTTCCEEEEECCGG------------------------------------
T ss_pred             H------------------HHHHHHHH--hCCCCCEEEEecCCC------------------------------------
Confidence            0                  00111121  345555555543210                                    


Q ss_pred             CceeeccCCcccCcCChhhhhcCCccceEEccCccCCCC-CCchhhhccCcccEEEcCCCcccCC-CcccccCCCCccEE
Q 002435          507 TKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGL-LPQCLDNFSDHLSILDLQHNKFCGS-IPQTFLSGRSLMMI  584 (922)
Q Consensus       507 l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~-~p~~l~~l~~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L  584 (922)
                               .+++..+..+...+++|+.|++++|++++. ++..+..++ +|++|++++|.+++. ++.....+++|++|
T Consensus       449 ---------~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  518 (592)
T 3ogk_B          449 ---------GLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCP-NLQKLEMRGCCFSERAIAAAVTKLPSLRYL  518 (592)
T ss_dssp             ---------GCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCT-TCCEEEEESCCCBHHHHHHHHHHCSSCCEE
T ss_pred             ---------CccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCc-ccCeeeccCCCCcHHHHHHHHHhcCccCee
Confidence                     011111222233355666666666666542 222333444 577777777776543 23334456777777


Q ss_pred             ecCCCcccccCCccc-cCCCCCcEEECCCC
Q 002435          585 DLSDNLLQGRIPRSL-VNCSSLKFLDLGNN  613 (922)
Q Consensus       585 ~Ls~N~l~~~~~~~l-~~l~~L~~L~Ls~N  613 (922)
                      +|++|++++.....+ ..++.+....+..+
T Consensus       519 ~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          519 WVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             EEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             ECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            777777765533333 35566666666554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=4.1e-27  Score=254.81  Aligned_cols=232  Identities=25%  Similarity=0.288  Sum_probs=161.6

Q ss_pred             ccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCC--CcccccCCCCccEEecCCCcccccCCccccCCCCCcEE
Q 002435          531 SLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGS--IPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFL  608 (922)
Q Consensus       531 ~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  608 (922)
                      +|++|++++|+++...+..|..++ +|++|++++|+++..  .+..+..+++|++|++++|.+++ +|..+..+++|++|
T Consensus        29 ~l~~L~L~~n~l~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L  106 (306)
T 2z66_A           29 SATRLELESNKLQSLPHGVFDKLT-QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL  106 (306)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred             CCCEEECCCCccCccCHhHhhccc-cCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEE
Confidence            566666666666643333455555 566666666666522  24455566667777777776663 45556667777777


Q ss_pred             ECCCCcCccCcc-hhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCC-CCChhhhhccccceecccc
Q 002435          609 DLGNNQISGTFP-SWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTG-KLPSKYFQCWNAMQVVNTS  686 (922)
Q Consensus       609 ~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g-~ip~~~~~~~~~l~~l~~~  686 (922)
                      ++++|++++..+ ..+..+++|++|++++|++.+..+..+  ..+++|+.|++++|.+++ .+|.. +.           
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~-~~-----------  172 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDI-FT-----------  172 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT--TTCTTCCEEECTTCEEGGGEECSC-CT-----------
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc--ccCcCCCEEECCCCccccccchhH-Hh-----------
Confidence            777777665544 456667777777777777766655443  456677777777776653 12211 00           


Q ss_pred             cccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCcccc
Q 002435          687 ELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLH  766 (922)
Q Consensus       687 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~  766 (922)
                                                              ..+.|+.|+|++|++++..|..++.+++|+.|+|++|+++
T Consensus       173 ----------------------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  212 (306)
T 2z66_A          173 ----------------------------------------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF  212 (306)
T ss_dssp             ----------------------------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred             ----------------------------------------hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence                                                    0245778888888888888888888899999999999999


Q ss_pred             ccCCccccCCCCCCEEeCCCCcCcccCcccccCCC-CCCeEeccCCccccCCC
Q 002435          767 GHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLT-FLEFFNVSNNNLTGPIP  818 (922)
Q Consensus       767 ~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~-~L~~L~ls~N~lsg~iP  818 (922)
                      +..+..+..+++|+.|||++|++++.+|..+..++ .|++|++++|++++..+
T Consensus       213 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            88888888899999999999999999998888884 89999999999987654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.4e-26  Score=264.94  Aligned_cols=249  Identities=22%  Similarity=0.215  Sum_probs=204.4

Q ss_pred             eeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCC
Q 002435          509 HYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSD  588 (922)
Q Consensus       509 ~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  588 (922)
                      .++.++..++ .+|..+.   ++++.|+|++|++++..|..|.+++ +|++|+|++|+|++..+..|.++++|++|+|++
T Consensus        58 ~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           58 KVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             EEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCC-CCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            3444444444 4554442   4788888888888888888888887 788999999988888888888889999999999


Q ss_pred             CcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCC
Q 002435          589 NLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGK  668 (922)
Q Consensus       589 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~  668 (922)
                      |++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|+..+.++.. .+.++++|+.|++++|++++ 
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~~-  210 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG-AFEGLFNLKYLNLGMCNIKD-  210 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCTTCCEEECTTSCCSS-
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh-hccCCCCCCEEECCCCcccc-
Confidence            9988877778888899999999999988777778888999999999885544444332 23678889999999998873 


Q ss_pred             CChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCccc
Q 002435          669 LPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTS  748 (922)
Q Consensus       669 ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~  748 (922)
                      +|.  +.                                                   ..+.|+.|+|++|++++..|..
T Consensus       211 ~~~--~~---------------------------------------------------~l~~L~~L~Ls~N~l~~~~~~~  237 (452)
T 3zyi_A          211 MPN--LT---------------------------------------------------PLVGLEELEMSGNHFPEIRPGS  237 (452)
T ss_dssp             CCC--CT---------------------------------------------------TCTTCCEEECTTSCCSEECGGG
T ss_pred             ccc--cc---------------------------------------------------ccccccEEECcCCcCcccCccc
Confidence            231  00                                                   0356889999999999999999


Q ss_pred             ccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCC
Q 002435          749 IANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPI  817 (922)
Q Consensus       749 ~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~i  817 (922)
                      |.++++|+.|+|++|++++..|..|.++++|+.|+|++|+|++..+..+..+++|+.|++++|++....
T Consensus       238 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  306 (452)
T 3zyi_A          238 FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC  306 (452)
T ss_dssp             GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred             ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999987654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=6.8e-27  Score=253.06  Aligned_cols=276  Identities=24%  Similarity=0.336  Sum_probs=162.4

Q ss_pred             ccccceEecCCCCcEEEEECCCCCCCCcccCccccccCCCCCeeeCCCCCCCCCCCCcc-ccCCCCCCEEECCCCCCCC-
Q 002435           73 CLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPE-IINLSRLSYLNLSSAGFFG-  150 (922)
Q Consensus        73 c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~-l~~l~~L~~L~Ls~n~l~~-  150 (922)
                      |.|++|.|...            +++.. +.  .+  .++|++|+|++|.+..  +|.. +.++++|++|+|++|.+.. 
T Consensus         7 C~~~~l~c~~~------------~l~~i-p~--~~--~~~l~~L~L~~n~l~~--i~~~~~~~l~~L~~L~L~~n~l~~~   67 (306)
T 2z66_A            7 CSGTEIRCNSK------------GLTSV-PT--GI--PSSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSSNGLSFK   67 (306)
T ss_dssp             EETTEEECCSS------------CCSSC-CS--CC--CTTCCEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCCEE
T ss_pred             eCCCEEEcCCC------------CcccC-CC--CC--CCCCCEEECCCCccCc--cCHhHhhccccCCEEECCCCccCcc
Confidence            78998888643            23322 11  22  2577888888887752  4543 6777778888887777752 


Q ss_pred             -cCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCc
Q 002435          151 -QIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRG  229 (922)
Q Consensus       151 -~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~  229 (922)
                       ..|..+..+++|++|++++|.+..                                +|..+..+++|++|++++|++.+
T Consensus        68 ~~~~~~~~~~~~L~~L~Ls~n~i~~--------------------------------l~~~~~~l~~L~~L~l~~n~l~~  115 (306)
T 2z66_A           68 GCCSQSDFGTTSLKYLDLSFNGVIT--------------------------------MSSNFLGLEQLEHLDFQHSNLKQ  115 (306)
T ss_dssp             EEEEHHHHSCSCCCEEECCSCSEEE--------------------------------EEEEEETCTTCCEEECTTSEEES
T ss_pred             cCcccccccccccCEEECCCCcccc--------------------------------ChhhcCCCCCCCEEECCCCcccc
Confidence             235566667777777777776321                                23334445555555555555543


Q ss_pred             cCc-cccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCC-CchhhhhCCCCCCEEEccCCCCCCCCcccc
Q 002435          230 RIP-SLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSG-ELPASIGNLASLEQLELSLNRFRGKTPHSM  307 (922)
Q Consensus       230 ~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l  307 (922)
                      ..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++..|..+
T Consensus       116 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  195 (306)
T 2z66_A          116 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF  195 (306)
T ss_dssp             STTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             cccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHh
Confidence            332 345555555555555555555555555555555555555555554 345555556666666666666655555556


Q ss_pred             cCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCC-CccEEEccCCCCcCccchhhhhhccCC
Q 002435          308 GNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLA-QLKFLEFSHNNFSGPIDLDMFLVNFKH  386 (922)
Q Consensus       308 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~  386 (922)
                      ..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..++ +|++|++++|.+.+..+...+...+..
T Consensus       196 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~  275 (306)
T 2z66_A          196 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD  275 (306)
T ss_dssp             TTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHH
T ss_pred             cCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHh
Confidence            6666666666666666555455566666777777777777666666666663 677777777777665554444344444


Q ss_pred             cceEeCcCccccc
Q 002435          387 LEHLSLSSNRLSL  399 (922)
Q Consensus       387 L~~L~Ls~n~l~~  399 (922)
                      .+.+.+..+.+..
T Consensus       276 ~~~~~~~~~~~~C  288 (306)
T 2z66_A          276 QRQLLVEVERMEC  288 (306)
T ss_dssp             TGGGBSCGGGCBE
T ss_pred             hhhhhcccccccc
Confidence            4444444444433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=2.7e-26  Score=261.59  Aligned_cols=249  Identities=23%  Similarity=0.231  Sum_probs=204.7

Q ss_pred             eeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCC
Q 002435          509 HYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSD  588 (922)
Q Consensus       509 ~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  588 (922)
                      .++.++..++ .+|..+.   ++++.|+|++|++++..+..|.+++ +|++|+|++|++++..+..|.++++|++|+|++
T Consensus        47 ~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           47 KVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             EEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCS-SCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             EEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCC-CCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            3444444444 4555443   4688888888888887778888887 788999999988888888888889999999999


Q ss_pred             CcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCC
Q 002435          589 NLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGK  668 (922)
Q Consensus       589 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~  668 (922)
                      |++++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|+..+.++.. .+.++++|+.|++++|.++ .
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~-~  199 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMCNLR-E  199 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTSCCS-S
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCCcCc-c
Confidence            9998777778888999999999999998877788888999999999885544444432 2367889999999999887 3


Q ss_pred             CChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCccc
Q 002435          669 LPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTS  748 (922)
Q Consensus       669 ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~  748 (922)
                      +|.  +.                                                   ..+.|+.|||++|++++..|..
T Consensus       200 ~~~--~~---------------------------------------------------~l~~L~~L~Ls~N~l~~~~~~~  226 (440)
T 3zyj_A          200 IPN--LT---------------------------------------------------PLIKLDELDLSGNHLSAIRPGS  226 (440)
T ss_dssp             CCC--CT---------------------------------------------------TCSSCCEEECTTSCCCEECTTT
T ss_pred             ccc--cC---------------------------------------------------CCcccCEEECCCCccCccChhh
Confidence            341  00                                                   0356899999999999999999


Q ss_pred             ccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCC
Q 002435          749 IANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPI  817 (922)
Q Consensus       749 ~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~i  817 (922)
                      |.++++|+.|+|++|++++..|..|.++++|+.|||++|+|++..+..+..++.|+.|++++|++....
T Consensus       227 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC  295 (440)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred             hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999987543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=6.2e-26  Score=258.61  Aligned_cols=252  Identities=20%  Similarity=0.199  Sum_probs=218.5

Q ss_pred             ccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEEC
Q 002435          531 SLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDL  610 (922)
Q Consensus       531 ~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  610 (922)
                      ....++.+++.++ .+|..+.   ++++.|+|++|++++..+..|..+++|++|+|++|++++..+..|.++++|++|+|
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence            4678899999998 5676554   37999999999999998999999999999999999999998899999999999999


Q ss_pred             CCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccccc
Q 002435          611 GNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRY  690 (922)
Q Consensus       611 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~  690 (922)
                      ++|++++..+..|..+++|++|+|++|++.+..+..+  ..+++|+.|++++|+..+.++...|..              
T Consensus       120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~--------------  183 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF--NRIPSLRRLDLGELKRLSYISEGAFEG--------------  183 (440)
T ss_dssp             CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTT--------------
T ss_pred             CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHh--hhCcccCEeCCCCCCCcceeCcchhhc--------------
Confidence            9999998888899999999999999999998765554  678999999999976555555443322              


Q ss_pred             cccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccccccCC
Q 002435          691 MEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHIL  770 (922)
Q Consensus       691 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip  770 (922)
                                                           .+.|+.|+|++|+++ .+| .+..+++|+.|+|++|++++..|
T Consensus       184 -------------------------------------l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~  224 (440)
T 3zyj_A          184 -------------------------------------LSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRP  224 (440)
T ss_dssp             -------------------------------------CSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECT
T ss_pred             -------------------------------------ccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccCh
Confidence                                                 346889999999999 556 48999999999999999999999


Q ss_pred             ccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCCCC-CCCCCCCccccCCCcCCCCCC
Q 002435          771 SCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQG-NQFPTFDKTSFNGNLGLCGKP  841 (922)
Q Consensus       771 ~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~~-~~~~~~~~~s~~gn~~lcg~~  841 (922)
                      ..|.++++|+.|+|++|++++..|..|.++++|+.|++++|++++..|.. ..+..+....+.+||.-|++.
T Consensus       225 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD  296 (440)
T ss_dssp             TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred             hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence            99999999999999999999999999999999999999999999766543 234455666788999999874

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=6.1e-26  Score=259.59  Aligned_cols=253  Identities=19%  Similarity=0.166  Sum_probs=218.3

Q ss_pred             ccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEEC
Q 002435          531 SLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDL  610 (922)
Q Consensus       531 ~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  610 (922)
                      ....++.+++.++ .+|..+.   +++++|+|++|+|++..+..|..+++|++|+|++|++++..+..|.++++|++|+|
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence            4578889998888 4676553   47999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccccc
Q 002435          611 GNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRY  690 (922)
Q Consensus       611 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~  690 (922)
                      ++|++++..+..|..+++|++|+|++|++.+..+..+  ..+++|+.|++++|+..+.+|...|..              
T Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~--------------  194 (452)
T 3zyi_A          131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF--NRVPSLMRLDLGELKKLEYISEGAFEG--------------  194 (452)
T ss_dssp             CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTT--------------
T ss_pred             CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHH--hcCCcccEEeCCCCCCccccChhhccC--------------
Confidence            9999998888889999999999999999998765544  778999999999976555555433221              


Q ss_pred             cccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccccccCC
Q 002435          691 MEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHIL  770 (922)
Q Consensus       691 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip  770 (922)
                                                           .+.|+.|+|++|++++. | .+..+++|+.|+|++|++++..|
T Consensus       195 -------------------------------------l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~  235 (452)
T 3zyi_A          195 -------------------------------------LFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRP  235 (452)
T ss_dssp             -------------------------------------CTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECG
T ss_pred             -------------------------------------CCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCc
Confidence                                                 34688999999999964 4 58899999999999999999999


Q ss_pred             ccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCCCC-CCCCCCCccccCCCcCCCCCCC
Q 002435          771 SCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQG-NQFPTFDKTSFNGNLGLCGKPL  842 (922)
Q Consensus       771 ~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~~-~~~~~~~~~s~~gn~~lcg~~~  842 (922)
                      ..|.++++|+.|+|++|++++..|..|.++++|+.|++++|+|++..|.. ..+..+....+.+||.-|++.+
T Consensus       236 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred             ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence            99999999999999999999999999999999999999999999765543 2344556667889999888753

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=2.4e-26  Score=250.53  Aligned_cols=271  Identities=25%  Similarity=0.325  Sum_probs=188.4

Q ss_pred             CCCCCCCCCCCCCCccccceEecCCCCcEEEEECCCCCCCCccc----CccccccCCCCCeeeCCCCCCCCCCCCccccC
Q 002435           59 KTASWKPEEANIDCCLWDGVECNENTGHVIKLDLSNSCLQGFIN----SSSGLFKLVHLEWLDLAFNYFICSEIPPEIIN  134 (922)
Q Consensus        59 ~~~~w~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~----~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~  134 (922)
                      ++.+|+.. ...++|.|.++.|......     -..+...|..-    ....-...+++++|+|++|.+.  .+|+.+++
T Consensus        31 aLl~~k~~-~~~~~~~~~~~w~~~~~~~-----~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~--~lp~~l~~  102 (328)
T 4fcg_A           31 VLSQWQRH-YNADRNRWHSAWRQANSNN-----PQIETRTGRALKATADLLEDATQPGRVALELRSVPLP--QFPDQAFR  102 (328)
T ss_dssp             HHHHHHHH-HHHCCTTHHHHHHHHTTTC-----TTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS--SCCSCGGG
T ss_pred             HHHHHHHh-ccCCchhhhhhhccccccc-----ccccccCCcchhhhHHHHhcccccceeEEEccCCCch--hcChhhhh
Confidence            45567641 1247899999988422110     01112222100    0000123477888888888875  47777888


Q ss_pred             CCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCC
Q 002435          135 LSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANL  214 (922)
Q Consensus       135 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l  214 (922)
                      +++|++|+|++|.+. .+|..++++++|++|++++|.+                               + .+|..++++
T Consensus       103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l-------------------------------~-~lp~~l~~l  149 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL-------------------------------R-ALPASIASL  149 (328)
T ss_dssp             GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCC-------------------------------C-CCCGGGGGC
T ss_pred             CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcc-------------------------------c-cCcHHHhcC
Confidence            888888888888876 7777777777888888777763                               2 234445555


Q ss_pred             CCCCEEeccCccCCccCcccc---------CCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhC
Q 002435          215 SSLTLLSLSGCELRGRIPSLL---------GNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGN  285 (922)
Q Consensus       215 ~~L~~L~Ls~n~l~~~~~~~l---------~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~  285 (922)
                      ++|++|++++|.+.+.+|..+         .++++|++|++++|.++ .+|..++++++|++|++++|.+++ +|..+..
T Consensus       150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~  227 (328)
T 4fcg_A          150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHH  227 (328)
T ss_dssp             TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGG
T ss_pred             cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhhcc
Confidence            555555555555555555444         44888888888888887 677778888888888888888874 5666888


Q ss_pred             CCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEE
Q 002435          286 LASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLE  365 (922)
Q Consensus       286 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  365 (922)
                      +++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..++.+++|+.++
T Consensus       228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~  307 (328)
T 4fcg_A          228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL  307 (328)
T ss_dssp             CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred             CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence            88888888888888888888888888888888888887778887788888888888888888888888888888888887


Q ss_pred             ccCCCCc
Q 002435          366 FSHNNFS  372 (922)
Q Consensus       366 L~~n~l~  372 (922)
                      +..+.+.
T Consensus       308 l~~~~~~  314 (328)
T 4fcg_A          308 VPPHLQA  314 (328)
T ss_dssp             CCGGGSC
T ss_pred             CCHHHHH
Confidence            7765443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=8.3e-26  Score=241.75  Aligned_cols=229  Identities=21%  Similarity=0.229  Sum_probs=183.2

Q ss_pred             ceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCC
Q 002435          533 EILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGN  612 (922)
Q Consensus       533 ~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~  612 (922)
                      +.++.+++.++ .+|..+   +++|++|++++|++++..+..|..+++|++|++++|++++..|..|.++++|++|++++
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            56777777776 345433   23688888888888877777788888888888888888887788888888888888888


Q ss_pred             Cc-CccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceeccccccccc
Q 002435          613 NQ-ISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYM  691 (922)
Q Consensus       613 N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~  691 (922)
                      |+ +.+..|..|..+++|++|++++|++.+..+..+  ..+++|+.|++++|++++. |...+..               
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~-~~~~~~~---------------  151 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--RGLAALQYLYLQDNALQAL-PDDTFRD---------------  151 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCCCC-CTTTTTT---------------
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHh--hCCcCCCEEECCCCccccc-CHhHhcc---------------
Confidence            86 777777888888888888888888887765544  5678888888888888743 3222211               


Q ss_pred             ccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCc
Q 002435          692 EGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILS  771 (922)
Q Consensus       692 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~  771 (922)
                                                          .+.|+.|+|++|++++..+..+..+++|+.|+|++|.+++..|.
T Consensus       152 ------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  195 (285)
T 1ozn_A          152 ------------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH  195 (285)
T ss_dssp             ------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             ------------------------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHh
Confidence                                                24578888999999877777788999999999999999999999


Q ss_pred             cccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCCC
Q 002435          772 CLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQ  819 (922)
Q Consensus       772 ~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~  819 (922)
                      .|+++++|+.|+|++|++++..|..+..++.|++|++++|++.+..+.
T Consensus       196 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~  243 (285)
T 1ozn_A          196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             HccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence            999999999999999999988888899999999999999999876653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.5e-24  Score=254.13  Aligned_cols=115  Identities=26%  Similarity=0.277  Sum_probs=54.7

Q ss_pred             CCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEE
Q 002435          529 SNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFL  608 (922)
Q Consensus       529 ~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  608 (922)
                      +++|+.|++++|++++ +|..+   + +|++|++++|++++. |.   .+.+|+.|++++|++++ +|   ..+++|+.|
T Consensus       120 l~~L~~L~L~~N~l~~-lp~~l---~-~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L  186 (622)
T 3g06_A          120 PSGLCKLWIFGNQLTS-LPVLP---P-GLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQEL  186 (622)
T ss_dssp             CTTCCEEECCSSCCSC-CCCCC---T-TCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEE
T ss_pred             CCCcCEEECCCCCCCc-CCCCC---C-CCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEE
Confidence            3455555555555553 33221   2 455566666655532 22   23455555555555553 23   234555555


Q ss_pred             ECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCC
Q 002435          609 DLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFT  666 (922)
Q Consensus       609 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~  666 (922)
                      ++++|++++. |.   .+++|+.|++++|.++... .     .+++|+.|++++|.++
T Consensus       187 ~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l~-~-----~~~~L~~L~Ls~N~L~  234 (622)
T 3g06_A          187 SVSDNQLASL-PT---LPSELYKLWAYNNRLTSLP-A-----LPSGLKELIVSGNRLT  234 (622)
T ss_dssp             ECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCC-C-----CCTTCCEEECCSSCCS
T ss_pred             ECCCCCCCCC-CC---ccchhhEEECcCCcccccC-C-----CCCCCCEEEccCCccC
Confidence            5555555532 22   1244555555555554321 1     1244555555555444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=2.5e-25  Score=237.99  Aligned_cols=225  Identities=25%  Similarity=0.246  Sum_probs=108.5

Q ss_pred             EEEECCCCCCCCcccCccccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEc
Q 002435           88 IKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDL  167 (922)
Q Consensus        88 ~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  167 (922)
                      +.++.++++++...     ..-.++|++|++++|.+... .+..+..+++|++|++++|.+.+..|..++++++|++|++
T Consensus        14 ~~~~c~~~~l~~ip-----~~~~~~l~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   87 (285)
T 1ozn_A           14 VTTSCPQQGLQAVP-----VGIPAASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL   87 (285)
T ss_dssp             CEEECCSSCCSSCC-----TTCCTTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             eEEEcCcCCcccCC-----cCCCCCceEEEeeCCcCCcc-CHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence            45566666655431     11235666666666666432 2344666666666666666665555555555666666666


Q ss_pred             CCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCc
Q 002435          168 SHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLS  247 (922)
Q Consensus       168 s~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  247 (922)
                      ++|..                              +....+..+..+++|++|++++|++.+..+..+.++++|++|+++
T Consensus        88 ~~n~~------------------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  137 (285)
T 1ozn_A           88 SDNAQ------------------------------LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ  137 (285)
T ss_dssp             CSCTT------------------------------CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCCC------------------------------ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECC
Confidence            55530                              222223344444444444444444444444444444455555555


Q ss_pred             CCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcc
Q 002435          248 FNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGEL  327 (922)
Q Consensus       248 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  327 (922)
                      +|.+++..+..++.+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++..
T Consensus       138 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  217 (285)
T 1ozn_A          138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (285)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence            55444443344444444444444444444333333444444444444444444444444444444444444444444333


Q ss_pred             cccccCCCCCceEecCCCccC
Q 002435          328 PASFGNLRSLEGLDISECKFS  348 (922)
Q Consensus       328 p~~l~~l~~L~~L~Ls~n~l~  348 (922)
                      +..+..+++|++|++++|.+.
T Consensus       218 ~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          218 TEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             HHHHTTCTTCCEEECCSSCEE
T ss_pred             HHHcccCcccCEEeccCCCcc
Confidence            333444444444444444443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.2e-24  Score=255.05  Aligned_cols=203  Identities=29%  Similarity=0.311  Sum_probs=138.2

Q ss_pred             CCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEE
Q 002435          529 SNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFL  608 (922)
Q Consensus       529 ~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  608 (922)
                      +++|++|++++|.+++. |.   .+. +|+.|++++|++++ +|..   +++|++|++++|++++. |.   .+++|+.|
T Consensus       100 l~~L~~L~Ls~N~l~~l-~~---~l~-~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L  166 (622)
T 3g06_A          100 PPGLLELSIFSNPLTHL-PA---LPS-GLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKL  166 (622)
T ss_dssp             CTTCCEEEECSCCCCCC-CC---CCT-TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEE
T ss_pred             CCCCCEEECcCCcCCCC-CC---CCC-CcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEE
Confidence            45677777777777753 33   223 68888888888775 3432   47788888888887753 33   34677888


Q ss_pred             ECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccc
Q 002435          609 DLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSEL  688 (922)
Q Consensus       609 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~  688 (922)
                      ++++|++++ +|   ..+++|+.|++++|++++.. .     .+++|+.|++++|.++ .+|..                
T Consensus       167 ~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l~-~-----~~~~L~~L~L~~N~l~-~l~~~----------------  219 (622)
T 3g06_A          167 WAYNNQLTS-LP---MLPSGLQELSVSDNQLASLP-T-----LPSELYKLWAYNNRLT-SLPAL----------------  219 (622)
T ss_dssp             ECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCC-C-----CCTTCCEEECCSSCCS-SCCCC----------------
T ss_pred             ECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCCC-C-----ccchhhEEECcCCccc-ccCCC----------------
Confidence            888888875 34   45677888888888877642 2     2367788888888776 23310                


Q ss_pred             cccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCcccccc
Q 002435          689 RYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGH  768 (922)
Q Consensus       689 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~  768 (922)
                                                             ++.|+.|+|++|+|++ +|   ..+++|+.|+|++|+|++ 
T Consensus       220 ---------------------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-  255 (622)
T 3g06_A          220 ---------------------------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-  255 (622)
T ss_dssp             ---------------------------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-
T ss_pred             ---------------------------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-
Confidence                                                   2346777788887775 55   345677788888887774 


Q ss_pred             CCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCCC
Q 002435          769 ILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQ  819 (922)
Q Consensus       769 ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~  819 (922)
                      +|.   .+++|+.|+|++|+|+ .+|..+.++++|+.|++++|+++|.+|.
T Consensus       256 lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          256 LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            444   5667778888888877 5677777788888888888887777664

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=3.4e-27  Score=255.73  Aligned_cols=246  Identities=24%  Similarity=0.232  Sum_probs=140.3

Q ss_pred             cCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCC-CCcCchhhc-------CCCCCCEEEcCCCCCCCcccccC
Q 002435          109 KLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGF-FGQIPSEIL-------ELSNLVSLDLSHNSYYNLIELKE  180 (922)
Q Consensus       109 ~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l-~~~~p~~l~-------~l~~L~~L~Ls~n~~~~~~~~~~  180 (922)
                      ..++|++|++++|.+   .+|..+...  |++|+|++|.+ ...+|..+.       ++++|++|++++|++..      
T Consensus        41 ~~~~L~~l~l~~n~l---~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~------  109 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE---ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG------  109 (312)
T ss_dssp             EEEECTTHHHHCCTT---CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBS------
T ss_pred             cCCCceeEeeccccc---ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccc------
Confidence            344555555555555   245444433  55555555555 334454444       45566666666555321      


Q ss_pred             CChhHHH--hcCCCCCEEEcCCCcCCCCCchhccCC-----CCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCC
Q 002435          181 PNLGNLV--KKLTNLKELALGGVTISSPIPHSLANL-----SSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLG  253 (922)
Q Consensus       181 ~~l~~~~--~~l~~L~~L~L~~n~~~~~~~~~l~~l-----~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  253 (922)
                       .+|..+  ..+++|++|++++|.+++. |..++.+     ++|++|++++|++.+..|..++++++|++|++++|++.+
T Consensus       110 -~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  187 (312)
T 1wwl_A          110 -TAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG  187 (312)
T ss_dssp             -CCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH
T ss_pred             -hhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc
Confidence             111111  3444455555555555554 4444444     667777777777666666666677777777777776654


Q ss_pred             C--ccccc--CCCCCCcEEEcccCCCCC--Cch-hhhhCCCCCCEEEccCCCCCCCCc-ccccCCCCCcEEEeeccCCCC
Q 002435          254 E--LPTSI--GNLDCLKRLDISWNELSG--ELP-ASIGNLASLEQLELSLNRFRGKTP-HSMGNFTRLYWLSLASNDFSG  325 (922)
Q Consensus       254 ~--~~~~l--~~l~~L~~L~L~~n~l~~--~~~-~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~  325 (922)
                      .  .+..+  ..+++|++|++++|.+++  .++ ..+.++++|++|++++|.+++..| ..+..+++|++|++++|.++ 
T Consensus       188 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-  266 (312)
T 1wwl_A          188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-  266 (312)
T ss_dssp             HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-
T ss_pred             chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-
Confidence            3  23333  666777777777777762  122 233466777777777777776553 34455666666666666666 


Q ss_pred             cccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCc
Q 002435          326 ELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFS  372 (922)
Q Consensus       326 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  372 (922)
                      .+|..+.  ++|++|++++|++++. |. +..+++|++|++++|.++
T Consensus       267 ~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          267 QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred             hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence            5555554  5666666666666654 43 566666666666666655

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.4e-26  Score=251.50  Aligned_cols=251  Identities=23%  Similarity=0.197  Sum_probs=155.3

Q ss_pred             hhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCC
Q 002435          525 ICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSS  604 (922)
Q Consensus       525 ~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  604 (922)
                      ++..+++|++|++++|.+++..|..+..++ +|++|++++|++++..+  +..+++|++|++++|++++..     ..++
T Consensus        29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~  100 (317)
T 3o53_A           29 LRQSAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPS  100 (317)
T ss_dssp             HHTTGGGCSEEECTTSCCCCCCHHHHTTCT-TCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTT
T ss_pred             HhccCCCCCEEECcCCccCcCCHHHhhCCC-cCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCC
Confidence            333355667777777777666556666666 57777777777665443  666667777777777666432     2366


Q ss_pred             CcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecc
Q 002435          605 LKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVN  684 (922)
Q Consensus       605 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~  684 (922)
                      |++|++++|++++..+..   +++|++|++++|++++..+..+  ..+++|+.|++++|.+++..|..++..++.++.++
T Consensus       101 L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~  175 (317)
T 3o53_A          101 IETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN  175 (317)
T ss_dssp             CCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCT--GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred             cCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhh--hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence            777777777766554433   4566777777777666554433  44566777777777666544444333444444444


Q ss_pred             cccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCcc
Q 002435          685 TSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNS  764 (922)
Q Consensus       685 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~  764 (922)
                      ++.+......                             .....+.|+.|+|++|++++. |..+..+++|+.|+|++|+
T Consensus       176 L~~N~l~~~~-----------------------------~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~  225 (317)
T 3o53_A          176 LQYNFIYDVK-----------------------------GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNK  225 (317)
T ss_dssp             CTTSCCCEEE-----------------------------CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSC
T ss_pred             CCCCcCcccc-----------------------------cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCc
Confidence            4332211100                             000135577777777777754 4447777777777777777


Q ss_pred             ccccCCccccCCCCCCEEeCCCCcCc-ccCcccccCCCCCCeEecc-CCccccCCCC
Q 002435          765 LHGHILSCLGNLTGLESLDLSNNKFS-GQIPQQLVDLTFLEFFNVS-NNNLTGPIPQ  819 (922)
Q Consensus       765 l~~~ip~~l~~L~~L~~L~Ls~N~l~-g~ip~~l~~L~~L~~L~ls-~N~lsg~iP~  819 (922)
                      +++ +|..+..+++|+.|+|++|.++ +.+|..+..++.|+.++++ .+.++|..|.
T Consensus       226 l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          226 LVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             CCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             ccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            774 5666777777777777777777 6677777777777777777 4456766554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=4.4e-27  Score=279.71  Aligned_cols=109  Identities=14%  Similarity=0.130  Sum_probs=64.4

Q ss_pred             CCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccc-cCCCCccEEecCCCcccccCCc-cccCCCCCc
Q 002435          529 SNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTF-LSGRSLMMIDLSDNLLQGRIPR-SLVNCSSLK  606 (922)
Q Consensus       529 ~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~L~  606 (922)
                      +++|+.|++++ .+++..+..+....++|+.|++++|.+++..+..+ ..+++|++|+|++|.+++.... ....+++|+
T Consensus       431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~  509 (594)
T 2p1m_B          431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR  509 (594)
T ss_dssp             CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSS
T ss_pred             CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCC
Confidence            66777777766 55554444444422367777777777765444333 4567777777777777543332 334467777


Q ss_pred             EEECCCCcCccCcchhh-cCCCCCCEEEcCCCc
Q 002435          607 FLDLGNNQISGTFPSWL-GTLRELNVLILKSNK  638 (922)
Q Consensus       607 ~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~  638 (922)
                      +|++++|+++......+ ..+++|++..+..+.
T Consensus       510 ~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          510 SLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             EEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             EEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence            77777777654333333 445666665555544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=3.3e-24  Score=228.15  Aligned_cols=226  Identities=22%  Similarity=0.179  Sum_probs=183.8

Q ss_pred             EEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCc
Q 002435          535 LDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQ  614 (922)
Q Consensus       535 L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~  614 (922)
                      .+-.+..++ .+|..+   +++|++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|+|++|+
T Consensus        12 ~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           12 YQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            444455554 355544   2368888888888887777788888889999999998888877788888999999999999


Q ss_pred             CccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCC-CChhhhhccccceeccccccccccc
Q 002435          615 ISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGK-LPSKYFQCWNAMQVVNTSELRYMEG  693 (922)
Q Consensus       615 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~-ip~~~~~~~~~l~~l~~~~~~~~~~  693 (922)
                      +++..+..|..+++|++|++++|++.+..+..+  ..+++|+.|++++|++++. +|.. +..                 
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~l~~~-~~~-----------------  147 (276)
T 2z62_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEY-FSN-----------------  147 (276)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCC--TTCTTCCEEECCSSCCCCCCCCGG-GGG-----------------
T ss_pred             cCccChhhhcCCccccEEECCCCCccccCchhc--ccCCCCCEEECcCCccceecCchh-hcc-----------------
Confidence            988888888889999999999999888765444  6788999999999988752 4432 111                 


Q ss_pred             ccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCC----EEeCCCccccccC
Q 002435          694 MIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQ----VLSLANNSLHGHI  769 (922)
Q Consensus       694 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~----~L~Ls~N~l~~~i  769 (922)
                                                        .+.|+.|+|++|++++..+..+..+.+|+    .|+|++|.+++..
T Consensus       148 ----------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~  193 (276)
T 2z62_A          148 ----------------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ  193 (276)
T ss_dssp             ----------------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEEC
T ss_pred             ----------------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccC
Confidence                                              24688899999999988888888888887    8999999999877


Q ss_pred             CccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCCC
Q 002435          770 LSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQ  819 (922)
Q Consensus       770 p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~  819 (922)
                      +..+.. .+|+.|+|++|++++..+..+.++++|+.|++++|++.+..|.
T Consensus       194 ~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          194 PGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             TTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred             ccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence            776665 4899999999999998888889999999999999999998874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=7.5e-28  Score=286.37  Aligned_cols=464  Identities=15%  Similarity=0.094  Sum_probs=236.8

Q ss_pred             CCccccceEecCCCCcEEEEECCCCCCCCcccCccccccCCCCCeeeCCCCCCCCC-C-CC------------ccccCCC
Q 002435           71 DCCLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICS-E-IP------------PEIINLS  136 (922)
Q Consensus        71 ~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~-~-~p------------~~l~~l~  136 (922)
                      -|++|.++...    ..+.++++......   +...+.++++|++|+++++....+ . .|            .....++
T Consensus        33 vck~W~~~~~~----~~~~l~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~  105 (594)
T 2p1m_B           33 VCKSWYEIERW----CRRKVFIGNCYAVS---PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYT  105 (594)
T ss_dssp             SCHHHHHHHHH----HCCEEEESSTTSSC---HHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCT
T ss_pred             HHHHHHHhhhh----hceEEeeccccccC---HHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCC
Confidence            35579888322    23455655433211   112466789999999998753211 0 11            1124677


Q ss_pred             CCCEEECCCCCCCCcCchhhc-CCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhcc---
Q 002435          137 RLSYLNLSSAGFFGQIPSEIL-ELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLA---  212 (922)
Q Consensus       137 ~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~---  212 (922)
                      +|++|+|++|.+.+..+..+. .+++|++|++++|.     .++...++..+.++++|++|++++|.+++..+..+.   
T Consensus       106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~-----~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  180 (594)
T 2p1m_B          106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE-----GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP  180 (594)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE-----EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred             CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC-----CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence            888888888888777666665 58888888888873     122233556666788888888888877665444443   


Q ss_pred             -CCCCCCEEeccCcc--CCcc-CccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCC------CCchhh
Q 002435          213 -NLSSLTLLSLSGCE--LRGR-IPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELS------GELPAS  282 (922)
Q Consensus       213 -~l~~L~~L~Ls~n~--l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~------~~~~~~  282 (922)
                       .+++|++|++++|.  +... ++..+..+++|++|++++|...+.++..+..+++|++|+++.+...      ..++..
T Consensus       181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~  260 (594)
T 2p1m_B          181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA  260 (594)
T ss_dssp             TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred             hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence             55677777777765  2211 1112234567777777666322225555666666666665544310      023335


Q ss_pred             hhCCCCCCEE-EccCCCCCCCCcccccCCCCCcEEEeeccCCCCcc-cccccCCCCCceEecCCCccCcc-CchhhcCCC
Q 002435          283 IGNLASLEQL-ELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGEL-PASFGNLRSLEGLDISECKFSSQ-IPSSLRNLA  359 (922)
Q Consensus       283 l~~l~~L~~L-~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~  359 (922)
                      +.++++|+.| .+..... +.++..+..+++|++|++++|.+++.. +..+..+++|++|++++| +... ++.....++
T Consensus       261 l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~  338 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK  338 (594)
T ss_dssp             HHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred             HhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence            5566666666 2222111 122222234455555555555543221 112334455555555544 2211 111122344


Q ss_pred             CccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccc-cCCCCccEEEecCCCCCC-Ccccc-cCCCCccE
Q 002435          360 QLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIF-NTSQKFNFVGLRSCNLNE-FPNFL-KNQHYLEV  436 (922)
Q Consensus       360 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~~L~~L~L~~~~l~~-lp~~l-~~~~~L~~  436 (922)
                      +|++|+++++.-.|                 ....+.++......+ ..+++|+.|.+..+.++. .+..+ ..+++|+.
T Consensus       339 ~L~~L~L~~~~~~g-----------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~  401 (594)
T 2p1m_B          339 DLRELRVFPSEPFV-----------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTR  401 (594)
T ss_dssp             TCCEEEEECSCTTC-----------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCE
T ss_pred             CCCEEEEecCcccc-----------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcce
Confidence            55555542210000                 001122222111111 124445555444444441 11112 23556666


Q ss_pred             EECc--C----CCCCCCCC-----ccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCC
Q 002435          437 LDLS--C----NKIHGKVP-----KWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPP  505 (922)
Q Consensus       437 L~Ls--~----n~l~~~~p-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~  505 (922)
                      |+++  +    +.+++...     ..+.  .+++|+.|++++ .+                                   
T Consensus       402 L~L~~~~~~~~~~l~~~~~~~~~~~l~~--~~~~L~~L~L~~-~l-----------------------------------  443 (594)
T 2p1m_B          402 FRLCIIEPKAPDYLTLEPLDIGFGAIVE--HCKDLRRLSLSG-LL-----------------------------------  443 (594)
T ss_dssp             EEEEESSTTCCCTTTCCCTHHHHHHHHH--HCTTCCEEECCS-SC-----------------------------------
T ss_pred             eEeecccCCCcccccCCchhhHHHHHHh--hCCCccEEeecC-cc-----------------------------------
Confidence            6666  2    33331111     1111  344555555433 21                                   


Q ss_pred             CCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchh-hhccCcccEEEcCCCcccCCCcc-cccCCCCccE
Q 002435          506 QTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCL-DNFSDHLSILDLQHNKFCGSIPQ-TFLSGRSLMM  583 (922)
Q Consensus       506 ~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l-~~l~~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~  583 (922)
                                  ++..+..+...+++|+.|++++|.+++..+..+ ..++ +|++|++++|.+++.... ....+++|++
T Consensus       444 ------------~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~  510 (594)
T 2p1m_B          444 ------------TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD-SLRKLEIRDCPFGDKALLANASKLETMRS  510 (594)
T ss_dssp             ------------CHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCT-TCCEEEEESCSCCHHHHHHTGGGGGGSSE
T ss_pred             ------------cHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCC-CcCEEECcCCCCcHHHHHHHHHhCCCCCE
Confidence                        112222333335667777777777765444444 3444 678888888777543332 3345778888


Q ss_pred             EecCCCcccccCCccc-cCCCCCcEEECCCCcCc
Q 002435          584 IDLSDNLLQGRIPRSL-VNCSSLKFLDLGNNQIS  616 (922)
Q Consensus       584 L~Ls~N~l~~~~~~~l-~~l~~L~~L~Ls~N~l~  616 (922)
                      |++++|+++......+ ..++.|++..+..+.-.
T Consensus       511 L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~  544 (594)
T 2p1m_B          511 LWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP  544 (594)
T ss_dssp             EEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred             EeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence            8888888754433344 55678877777766543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=5.7e-25  Score=252.81  Aligned_cols=222  Identities=23%  Similarity=0.220  Sum_probs=155.8

Q ss_pred             CCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEE
Q 002435          529 SNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFL  608 (922)
Q Consensus       529 ~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  608 (922)
                      +++|+.|+|++|.+++..|..|..++ +|++|+|++|.+++..|  +..+++|++|+|++|.|++..+     .++|++|
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L  104 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL  104 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence            34688888888888877777777777 68888888888876655  7778888888888888775432     3778888


Q ss_pred             ECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccc
Q 002435          609 DLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSEL  688 (922)
Q Consensus       609 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~  688 (922)
                      ++++|++++..+.   .+++|+.|+|++|++++..|..+  ..+++|+.|+|++|.+++.+|..+...            
T Consensus       105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~~------------  167 (487)
T 3oja_A          105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAAS------------  167 (487)
T ss_dssp             ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCG--GGGSSEEEEECTTSCCCEEEGGGGGGG------------
T ss_pred             ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhh--cCCCCCCEEECCCCCCCCcChHHHhhh------------
Confidence            8888888776554   35678888888888877766554  456778888888888776555432211            


Q ss_pred             cccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCcccccc
Q 002435          689 RYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGH  768 (922)
Q Consensus       689 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~  768 (922)
                                                             ++.|+.|+|++|.|++..+  +..+++|+.|+|++|.+++.
T Consensus       168 ---------------------------------------l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~  206 (487)
T 3oja_A          168 ---------------------------------------SDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM  206 (487)
T ss_dssp             ---------------------------------------TTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE
T ss_pred             ---------------------------------------CCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCC
Confidence                                                   2346677777777776522  33477777777777777765


Q ss_pred             CCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccc-cCCC
Q 002435          769 ILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLT-GPIP  818 (922)
Q Consensus       769 ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~ls-g~iP  818 (922)
                      +|. ++.+++|+.|+|++|.|++ +|..+..++.|+.|++++|++. |.+|
T Consensus       207 ~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~  255 (487)
T 3oja_A          207 GPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR  255 (487)
T ss_dssp             CGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred             CHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence            444 7777777777777777775 5666777777777777777776 4444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=1.7e-25  Score=257.26  Aligned_cols=237  Identities=24%  Similarity=0.180  Sum_probs=202.1

Q ss_pred             CCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccE
Q 002435          504 PPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMM  583 (922)
Q Consensus       504 ~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  583 (922)
                      +++++.|++++|.+++..|..+.. +++|++|+|++|.+++..|  +..++ +|++|++++|.|++..+     .++|++
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~--l~~l~-~L~~L~Ls~N~l~~l~~-----~~~L~~  103 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAP-FTKLELLNLSSNVLYETLD--LESLS-TLRTLDLNNNYVQELLV-----GPSIET  103 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTT-CTTCCEEECTTSCCEEEEE--CTTCT-TCCEEECCSSEEEEEEE-----CTTCCE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhC-CCCCCEEEeeCCCCCCCcc--cccCC-CCCEEEecCCcCCCCCC-----CCCcCE
Confidence            457889999999998766666666 8999999999999987665  77777 79999999999986443     389999


Q ss_pred             EecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCC
Q 002435          584 IDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNN  663 (922)
Q Consensus       584 L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N  663 (922)
                      |++++|.+++..+.   .+++|+.|+|++|++++..|..++.+++|++|+|++|.+++.+|..+. ..+++|+.|+|++|
T Consensus       104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~l~~L~~L~Ls~N  179 (487)
T 3oja_A          104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYN  179 (487)
T ss_dssp             EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTS
T ss_pred             EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh-hhCCcccEEecCCC
Confidence            99999999987665   357899999999999999999999999999999999999998776542 25799999999999


Q ss_pred             cCCCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccc
Q 002435          664 RFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDG  743 (922)
Q Consensus       664 ~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g  743 (922)
                      .+++..+..                                                      .++.|+.|+|++|++++
T Consensus       180 ~l~~~~~~~------------------------------------------------------~l~~L~~L~Ls~N~l~~  205 (487)
T 3oja_A          180 FIYDVKGQV------------------------------------------------------VFAKLKTLDLSSNKLAF  205 (487)
T ss_dssp             CCCEEECCC------------------------------------------------------CCTTCCEEECCSSCCCE
T ss_pred             ccccccccc------------------------------------------------------cCCCCCEEECCCCCCCC
Confidence            987431100                                                      13568999999999997


Q ss_pred             cCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCc-ccCcccccCCCCCCeEecc
Q 002435          744 EIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFS-GQIPQQLVDLTFLEFFNVS  809 (922)
Q Consensus       744 ~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~-g~ip~~l~~L~~L~~L~ls  809 (922)
                      ..| .++.+++|+.|||++|.+++ +|..++.+++|+.|++++|.++ +.+|..+..++.|+.++++
T Consensus       206 ~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          206 MGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             ECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            555 59999999999999999997 6778999999999999999999 7888999999999999887

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=9.8e-26  Score=244.86  Aligned_cols=242  Identities=25%  Similarity=0.274  Sum_probs=137.5

Q ss_pred             HHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCC
Q 002435          186 LVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCL  265 (922)
Q Consensus       186 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  265 (922)
                      .+..+++|++|++++|.+++..|..+..+++|++|++++|++.+..+  +..+++|++|++++|.+++..     ..++|
T Consensus        29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L  101 (317)
T 3o53_A           29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSI  101 (317)
T ss_dssp             HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTC
T ss_pred             HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCc
Confidence            34445567777777777666666666666667777766666664433  666666666666666655321     22556


Q ss_pred             cEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCC
Q 002435          266 KRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISEC  345 (922)
Q Consensus       266 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  345 (922)
                      ++|++++|.+++..+.   .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.             
T Consensus       102 ~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-------------  165 (317)
T 3o53_A          102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-------------  165 (317)
T ss_dssp             CEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG-------------
T ss_pred             CEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh-------------
Confidence            6666666665543322   234455555555555544444444444444444444444443333332             


Q ss_pred             ccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCc
Q 002435          346 KFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFP  425 (922)
Q Consensus       346 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp  425 (922)
                                ..+++|++|++++|.+++. +..   ..+++|++|++++|+++++++. +..+++|+.|++++|.++.+|
T Consensus       166 ----------~~l~~L~~L~L~~N~l~~~-~~~---~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~  230 (317)
T 3o53_A          166 ----------ASSDTLEHLNLQYNFIYDV-KGQ---VVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIE  230 (317)
T ss_dssp             ----------GGTTTCCEEECTTSCCCEE-ECC---CCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEEC
T ss_pred             ----------hccCcCCEEECCCCcCccc-ccc---cccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchh
Confidence                      2344455555555544422 111   1245555555555555555443 445566666666666666666


Q ss_pred             ccccCCCCccEEECcCCCCC-CCCCccccccCCCCccEEEccC
Q 002435          426 NFLKNQHYLEVLDLSCNKIH-GKVPKWLIEPSMQNFSYLNLSH  467 (922)
Q Consensus       426 ~~l~~~~~L~~L~Ls~n~l~-~~~p~~~~~~~l~~L~~L~L~~  467 (922)
                      ..+..+++|+.|++++|++. +..|.++.  .+++|+.+++++
T Consensus       231 ~~~~~l~~L~~L~l~~N~~~~~~~~~~~~--~~~~L~~l~l~~  271 (317)
T 3o53_A          231 KALRFSQNLEHFDLRGNGFHCGTLRDFFS--KNQRVQTVAKQT  271 (317)
T ss_dssp             TTCCCCTTCCEEECTTCCCBHHHHHHHHH--TCHHHHHHHHHH
T ss_pred             hHhhcCCCCCEEEccCCCccCcCHHHHHh--ccccceEEECCC
Confidence            66777778888888888887 55666655  667777777663

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=3.8e-23  Score=218.98  Aligned_cols=29  Identities=28%  Similarity=0.321  Sum_probs=20.7

Q ss_pred             CCCccccceEecCCCCcEEEEECCCCCCCC
Q 002435           70 IDCCLWDGVECNENTGHVIKLDLSNSCLQG   99 (922)
Q Consensus        70 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g   99 (922)
                      .++|.|.|+.|.-. +.++.++++++.++.
T Consensus         2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~   30 (270)
T 2o6q_A            2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA   30 (270)
T ss_dssp             CCCBGGGTCSBEEE-TTTTEEECTTSCCSS
T ss_pred             CccCCCCCCCCEeC-CCCCEEEccCCCCCc
Confidence            47899999999632 345567777777665

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.8e-22  Score=213.70  Aligned_cols=206  Identities=23%  Similarity=0.226  Sum_probs=138.8

Q ss_pred             ccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEEC
Q 002435          531 SLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDL  610 (922)
Q Consensus       531 ~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  610 (922)
                      ..+.++++++.++. +|..+.   +++++|++++|++++..+..|..+++|++|++++|+++...+..|.++++|++|++
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCCc-cCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            45667777777763 454332   25666666666666555556666666666666666666555555566666666666


Q ss_pred             CCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccccc
Q 002435          611 GNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRY  690 (922)
Q Consensus       611 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~  690 (922)
                      ++|++++..+..|..+++|++|++++|++++..+..+  ..+                                      
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l--------------------------------------  132 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--DSL--------------------------------------  132 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT--TTC--------------------------------------
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh--CcC--------------------------------------
Confidence            6666665555555555555555555555544332221  222                                      


Q ss_pred             cccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccccccCC
Q 002435          691 MEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHIL  770 (922)
Q Consensus       691 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip  770 (922)
                                                            +.|+.|+|++|++++..+..|+.+++|+.|+|++|++++..+
T Consensus       133 --------------------------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  174 (270)
T 2o6q_A          133 --------------------------------------TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE  174 (270)
T ss_dssp             --------------------------------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             --------------------------------------cCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence                                                  345566666666665555567788889999999999988888


Q ss_pred             ccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCC
Q 002435          771 SCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIP  818 (922)
Q Consensus       771 ~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP  818 (922)
                      ..|.++++|+.|+|++|++++..+..+..++.|+.|++++|++.+..+
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            888899999999999999998877788889999999999998877654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=7.4e-23  Score=217.67  Aligned_cols=212  Identities=24%  Similarity=0.241  Sum_probs=164.9

Q ss_pred             CccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEE
Q 002435          530 NSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLD  609 (922)
Q Consensus       530 ~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  609 (922)
                      ++|++|++++|++++..+..|..++ +|++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|+
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCT-TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCccEEECCCCcccccCHhHhcccc-CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            3678888888888877666777777 688888888888877777788888888888888888887778888888888888


Q ss_pred             CCCCcCccCcchhhcCCCCCCEEEcCCCccccc-CCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccc
Q 002435          610 LGNNQISGTFPSWLGTLRELNVLILKSNKLHGM-IREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSEL  688 (922)
Q Consensus       610 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~  688 (922)
                      +++|++.+..+..++.+++|++|++++|++.+. +|..+  ..+++|+.|++++|++++..+ ..+..+..+        
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~--~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L--------  175 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF--SNLTNLEHLDLSSNKIQSIYC-TDLRVLHQM--------  175 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG--GGCTTCCEEECCSSCCCEECG-GGGHHHHTC--------
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhh--ccCCCCCEEECCCCCCCcCCH-HHhhhhhhc--------
Confidence            888888877777788888888888888888764 34433  567888888888888874333 323222211        


Q ss_pred             cccccccccchhccccccceeeeeeeeeecccccccccccccce-EEEeccccccccCcccccccCCCCEEeCCCccccc
Q 002435          689 RYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLT-GVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHG  767 (922)
Q Consensus       689 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~  767 (922)
                                                              ..+. .|++++|.+++..+..+.. .+|+.|+|++|++++
T Consensus       176 ----------------------------------------~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~  214 (276)
T 2z62_A          176 ----------------------------------------PLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKS  214 (276)
T ss_dssp             ----------------------------------------TTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSC
T ss_pred             ----------------------------------------cccceeeecCCCcccccCccccCC-CcccEEECCCCceee
Confidence                                                    1122 7899999999766665554 489999999999999


Q ss_pred             cCCccccCCCCCCEEeCCCCcCcccCc
Q 002435          768 HILSCLGNLTGLESLDLSNNKFSGQIP  794 (922)
Q Consensus       768 ~ip~~l~~L~~L~~L~Ls~N~l~g~ip  794 (922)
                      ..+..|.++++|+.|+|++|.+++..|
T Consensus       215 ~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          215 VPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             cCHhHhcccccccEEEccCCcccccCC
Confidence            888889999999999999999997654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=1.2e-23  Score=227.75  Aligned_cols=230  Identities=19%  Similarity=0.180  Sum_probs=174.5

Q ss_pred             ccceEEccCccCCCCCCc---hhhhccCcccEEEcCCCcccCCCcccc--cCCCCccEEecCCCcccccCC----ccccC
Q 002435          531 SLEILDLSYNNLSGLLPQ---CLDNFSDHLSILDLQHNKFCGSIPQTF--LSGRSLMMIDLSDNLLQGRIP----RSLVN  601 (922)
Q Consensus       531 ~L~~L~Ls~N~l~~~~p~---~l~~l~~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~~----~~l~~  601 (922)
                      .++.+.+.++.++...-.   .+..++ +|++|++++|++++..|..+  ..+++|++|+|++|++++..+    ..+..
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYS-RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHS-CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccC-ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            456667766665422100   112233 58888888888888888877  788889999999998887555    34557


Q ss_pred             CCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCccccc--CCCCCCCCCCCCccEEEccCCcCCCCCChhhhhcccc
Q 002435          602 CSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGM--IREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNA  679 (922)
Q Consensus       602 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~  679 (922)
                      +++|++|+|++|++.+..|..|+.+++|++|+|++|++.+.  ++.......+++|++|++++|+++ .+|.....-   
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l---  219 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAAL---  219 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHH---
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHH---
Confidence            88999999999999888888899999999999999988663  222333356889999999999886 222210000   


Q ss_pred             ceecccccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCccccccc---CCCC
Q 002435          680 MQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANL---KGLQ  756 (922)
Q Consensus       680 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l---~~L~  756 (922)
                                                                   ....+.|+.|||++|++++.+|..++.+   ++|+
T Consensus       220 ---------------------------------------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~  254 (310)
T 4glp_A          220 ---------------------------------------------AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALN  254 (310)
T ss_dssp             ---------------------------------------------HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCC
T ss_pred             ---------------------------------------------HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCC
Confidence                                                         0013568899999999999989888887   6999


Q ss_pred             EEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcccc
Q 002435          757 VLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTG  815 (922)
Q Consensus       757 ~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg  815 (922)
                      +|+|++|+|+ .+|..+.  ++|+.|||++|+|++. |. +..++.|+.|++++|+++.
T Consensus       255 ~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          255 SLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             EEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            9999999999 6787775  7999999999999985 33 6788999999999999874

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=5.8e-24  Score=235.54  Aligned_cols=262  Identities=18%  Similarity=0.226  Sum_probs=187.2

Q ss_pred             eeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCC----chhhhccCcccEEEcCCCcccCCCcccccCC-----C
Q 002435          509 HYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLP----QCLDNFSDHLSILDLQHNKFCGSIPQTFLSG-----R  579 (922)
Q Consensus       509 ~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p----~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l-----~  579 (922)
                      .+.++.|.++|.+|..+.. .++|++|++++|.+++..+    ..+..++.+|++|++++|++++..+..+..+     +
T Consensus         2 ~~~ls~n~~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSI-PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTS-CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             ccccccccchHHHHHHHhC-CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            3567778888877776554 5669999999999887766    5666665468999999999888777777664     8


Q ss_pred             CccEEecCCCcccccCCccc----cCC-CCCcEEECCCCcCccCcchhhc----C-CCCCCEEEcCCCcccccCCCCC--
Q 002435          580 SLMMIDLSDNLLQGRIPRSL----VNC-SSLKFLDLGNNQISGTFPSWLG----T-LRELNVLILKSNKLHGMIREPN--  647 (922)
Q Consensus       580 ~L~~L~Ls~N~l~~~~~~~l----~~l-~~L~~L~Ls~N~l~~~~p~~~~----~-l~~L~~L~L~~N~l~~~~~~~~--  647 (922)
                      +|++|+|++|++++..+..+    ..+ ++|++|+|++|++++..+..+.    . .++|++|+|++|++.+..+...  
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            89999999999887766644    444 7899999999998877765543    3 3689999999998875322111  


Q ss_pred             CCCCCC-CccEEEccCCcCCCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeeccccccccc
Q 002435          648 TGCGFP-ELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDK  726 (922)
Q Consensus       648 ~~~~l~-~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  726 (922)
                      ....++ +|+.|+|++|++++..+..+...+.                                               .
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-----------------------------------------------~  193 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLA-----------------------------------------------S  193 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH-----------------------------------------------T
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHHH-----------------------------------------------h
Confidence            001233 8999999999887554433211100                                               0


Q ss_pred             ccccceEEEecccccccc----Cccccccc-CCCCEEeCCCccccccCC----ccccCCCCCCEEeCCCCcCcccCc---
Q 002435          727 VPNFLTGVILSSNRFDGE----IPTSIANL-KGLQVLSLANNSLHGHIL----SCLGNLTGLESLDLSNNKFSGQIP---  794 (922)
Q Consensus       727 ~~~~l~~L~Ls~N~l~g~----ip~~~~~l-~~L~~L~Ls~N~l~~~ip----~~l~~L~~L~~L~Ls~N~l~g~ip---  794 (922)
                      .+..|+.|||++|++++.    ++..+..+ ++|++|||++|.+++..+    ..+..++.|+.|+|++|.+++..+   
T Consensus       194 ~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~  273 (362)
T 3goz_A          194 IPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC  273 (362)
T ss_dssp             SCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH
T ss_pred             CCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHH
Confidence            123688899999998873    55566553 589999999999987654    445677889999999998655433   


Q ss_pred             ----ccccCCCCCCeEeccCCccccCCC
Q 002435          795 ----QQLVDLTFLEFFNVSNNNLTGPIP  818 (922)
Q Consensus       795 ----~~l~~L~~L~~L~ls~N~lsg~iP  818 (922)
                          ..+.+++.|+.||+++|++.+..|
T Consensus       274 ~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          274 KALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             HHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             HHHHHHhccCCceEEEecCCCcCCCcch
Confidence                457788889999999999876633

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=1.4e-22  Score=214.77  Aligned_cols=210  Identities=24%  Similarity=0.283  Sum_probs=127.6

Q ss_pred             ccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhc
Q 002435          132 IINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSL  211 (922)
Q Consensus       132 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l  211 (922)
                      ...+++|++|++++|.+. .++ .+..+++|++|++++|.+..+         ..+..+++|++|++++|.+++..+..+
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~---------~~l~~l~~L~~L~L~~n~l~~~~~~~~  105 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDI---------SALKELTNLTYLILTGNQLQSLPNGVF  105 (272)
T ss_dssp             HHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCC---------GGGTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             cccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCc---------hhhcCCCCCCEEECCCCccCccChhHh
Confidence            344555566666655553 222 355566666666666553221         134455555555555555665555556


Q ss_pred             cCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCE
Q 002435          212 ANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQ  291 (922)
Q Consensus       212 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  291 (922)
                      ..+++|++|++++|++++..+..++.+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus       106 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  185 (272)
T 3rfs_A          106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD  185 (272)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCE
Confidence            66666777777766666555555666666777777777666655555666666777777777666555555666666777


Q ss_pred             EEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCC
Q 002435          292 LELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLA  359 (922)
Q Consensus       292 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~  359 (922)
                      |++++|.+++..+..+..+++|+.|++++|.+.+       .+++|+.|+++.|.++|.+|.+++.++
T Consensus       186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          186 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             EECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence            7776666666666566666666666666666543       244566666666666666666655543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=9e-22  Score=210.15  Aligned_cols=205  Identities=23%  Similarity=0.289  Sum_probs=157.7

Q ss_pred             hhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCC
Q 002435          550 LDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLREL  629 (922)
Q Consensus       550 l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  629 (922)
                      +.+++ +++.+++++|.++. +|..+.  ++++.|+|++|++++..+..|..+++|++|+|++|++++..+.  +.+++|
T Consensus         6 ~~~l~-~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L   79 (290)
T 1p9a_G            6 VSKVA-SHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL   79 (290)
T ss_dssp             EECST-TCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred             ccccC-CccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence            34445 68889999988884 454442  6788899999998888888888888999999999988865443  678888


Q ss_pred             CEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccccccccccccchhcccccccee
Q 002435          630 NVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIY  709 (922)
Q Consensus       630 ~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  709 (922)
                      ++|++++|++... |...  ..+++|+.|++++|++++..| ..|..                                 
T Consensus        80 ~~L~Ls~N~l~~l-~~~~--~~l~~L~~L~l~~N~l~~l~~-~~~~~---------------------------------  122 (290)
T 1p9a_G           80 GTLDLSHNQLQSL-PLLG--QTLPALTVLDVSFNRLTSLPL-GALRG---------------------------------  122 (290)
T ss_dssp             CEEECCSSCCSSC-CCCT--TTCTTCCEEECCSSCCCCCCS-STTTT---------------------------------
T ss_pred             CEEECCCCcCCcC-chhh--ccCCCCCEEECCCCcCcccCH-HHHcC---------------------------------
Confidence            8888888888744 3332  567888888888888874332 22211                                 


Q ss_pred             eeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcC
Q 002435          710 DYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKF  789 (922)
Q Consensus       710 ~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l  789 (922)
                                        .+.|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|.++++|+.|+|++|+|
T Consensus       123 ------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l  184 (290)
T 1p9a_G          123 ------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL  184 (290)
T ss_dssp             ------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ------------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcC
Confidence                              24577888888888877777788888888888888888877777788888888888888888


Q ss_pred             cccCcccccCCCCCCeEeccCCccccC
Q 002435          790 SGQIPQQLVDLTFLEFFNVSNNNLTGP  816 (922)
Q Consensus       790 ~g~ip~~l~~L~~L~~L~ls~N~lsg~  816 (922)
                      + .+|..+..++.|+.+++++|++.+.
T Consensus       185 ~-~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          185 Y-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             C-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             C-ccChhhcccccCCeEEeCCCCccCc
Confidence            8 5677777788888888888888654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=1.3e-21  Score=208.92  Aligned_cols=212  Identities=24%  Similarity=0.226  Sum_probs=168.6

Q ss_pred             cCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCC
Q 002435          406 NTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYD  485 (922)
Q Consensus       406 ~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  485 (922)
                      ..+++++.++++++.++.+|..+.  +.++.|++++|++++..+..+.  .+++|++|++++|.+++....         
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~---------   73 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLM--PYTRLTQLNLDRAELTKLQVD---------   73 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGT--TCTTCCEEECTTSCCCEEECC---------
T ss_pred             cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhh--cCCCCCEEECCCCccCcccCC---------
Confidence            345566666666666666665443  5788888888888776666665  677777777777776543211         


Q ss_pred             CceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCC
Q 002435          486 GFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHN  565 (922)
Q Consensus       486 l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N  565 (922)
                                                               ..+++|++|++++|+++ .+|..+..++ +|++|++++|
T Consensus        74 -----------------------------------------~~l~~L~~L~Ls~N~l~-~l~~~~~~l~-~L~~L~l~~N  110 (290)
T 1p9a_G           74 -----------------------------------------GTLPVLGTLDLSHNQLQ-SLPLLGQTLP-ALTVLDVSFN  110 (290)
T ss_dssp             -----------------------------------------SCCTTCCEEECCSSCCS-SCCCCTTTCT-TCCEEECCSS
T ss_pred             -----------------------------------------CCCCcCCEEECCCCcCC-cCchhhccCC-CCCEEECCCC
Confidence                                                     11678899999999988 5677777777 7999999999


Q ss_pred             cccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCC
Q 002435          566 KFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIRE  645 (922)
Q Consensus       566 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~  645 (922)
                      +|++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+++.. |.
T Consensus       111 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~  189 (290)
T 1p9a_G          111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PK  189 (290)
T ss_dssp             CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CT
T ss_pred             cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc-Ch
Confidence            99988888899999999999999999988888899999999999999999988778889999999999999999854 44


Q ss_pred             CCCCCCCCCccEEEccCCcCCCCCChhhhhc
Q 002435          646 PNTGCGFPELRIIDLSNNRFTGKLPSKYFQC  676 (922)
Q Consensus       646 ~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~  676 (922)
                      ..  ...++|+.|+|++|++.|.+...++..
T Consensus       190 ~~--~~~~~L~~l~L~~Np~~C~c~~~~l~~  218 (290)
T 1p9a_G          190 GF--FGSHLLPFAFLHGNPWLCNCEILYFRR  218 (290)
T ss_dssp             TT--TTTCCCSEEECCSCCBCCSGGGHHHHH
T ss_pred             hh--cccccCCeEEeCCCCccCcCccHHHHH
Confidence            33  456799999999999998876555543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=1.6e-23  Score=229.80  Aligned_cols=236  Identities=22%  Similarity=0.196  Sum_probs=146.4

Q ss_pred             CCCccccceEecCCCCcEEEEECCCCCCCCcccCccccccC--CCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCC
Q 002435           70 IDCCLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKL--VHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAG  147 (922)
Q Consensus        70 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l--~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~  147 (922)
                      .-|.+|.++.|+.  ..++.++++++.+...     .+..+  +++++|++++|.+.+.  +..+..+++|++|++++|.
T Consensus        34 ~vc~~W~~~~~~~--~~~~~l~l~~~~~~~~-----~~~~~~~~~l~~L~l~~n~l~~~--~~~~~~~~~L~~L~L~~~~  104 (336)
T 2ast_B           34 GVCKRWYRLASDE--SLWQTLDLTGKNLHPD-----VTGRLLSQGVIAFRCPRSFMDQP--LAEHFSPFRVQHMDLSNSV  104 (336)
T ss_dssp             SSCHHHHHHHTCS--TTSSEEECTTCBCCHH-----HHHHHHHTTCSEEECTTCEECSC--CCSCCCCBCCCEEECTTCE
T ss_pred             HHHHHHHHHhcCc--hhheeeccccccCCHH-----HHHhhhhccceEEEcCCcccccc--chhhccCCCCCEEEccCCC
Confidence            3456799998863  3577899998877632     55666  7888888888887653  3346678888888888888


Q ss_pred             CCCc-CchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCC-cCCCC-CchhccCCCCCCEEeccC
Q 002435          148 FFGQ-IPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGV-TISSP-IPHSLANLSSLTLLSLSG  224 (922)
Q Consensus       148 l~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n-~~~~~-~~~~l~~l~~L~~L~Ls~  224 (922)
                      +.+. +|..+.++++|++|++++|.+.       ...+..+..+++|++|++++| .+++. ++..+..+++|++|++++
T Consensus       105 l~~~~~~~~~~~~~~L~~L~L~~~~l~-------~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~  177 (336)
T 2ast_B          105 IEVSTLHGILSQCSKLQNLSLEGLRLS-------DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW  177 (336)
T ss_dssp             ECHHHHHHHHTTBCCCSEEECTTCBCC-------HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCC
T ss_pred             cCHHHHHHHHhhCCCCCEEeCcCcccC-------HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCC
Confidence            7655 6777777888888888887632       234455666677777777766 45542 455556666666666666


Q ss_pred             c-cCCcc-CccccCCCC-CCCEEeCcCC--CCC-CCcccccCCCCCCcEEEcccCC-CCCCchhhhhCCCCCCEEEccCC
Q 002435          225 C-ELRGR-IPSLLGNLT-KLMYLDLSFN--NLL-GELPTSIGNLDCLKRLDISWNE-LSGELPASIGNLASLEQLELSLN  297 (922)
Q Consensus       225 n-~l~~~-~~~~l~~l~-~L~~L~Ls~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n  297 (922)
                      | .+++. ++..+..++ +|++|++++|  .++ +.++..+..+++|++|++++|. +++..+..+.++++|++|++++|
T Consensus       178 ~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          178 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             CTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             CCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            6 66543 344555666 6666666666  333 2344455555666666666665 44445555555566666666655


Q ss_pred             C-CCCCCcccccCCCCCcEEEeecc
Q 002435          298 R-FRGKTPHSMGNFTRLYWLSLASN  321 (922)
Q Consensus       298 ~-l~~~~~~~l~~l~~L~~L~L~~n  321 (922)
                      . +.......+..+++|+.|++++|
T Consensus       258 ~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          258 YDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             TTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCHHHHHHHhcCCCCCEEeccCc
Confidence            3 11111113444555555555544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=1.9e-21  Score=205.94  Aligned_cols=199  Identities=23%  Similarity=0.280  Sum_probs=107.5

Q ss_pred             CCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCC
Q 002435          137 RLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSS  216 (922)
Q Consensus       137 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~  216 (922)
                      ++..+++..+.+.+..  ....+++|++|++++|.+..+         ..+..+++|++|++++|.+.+.  ..+..+++
T Consensus        20 ~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~---------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~   86 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV---------QGIQYLPNVRYLALGGNKLHDI--SALKELTN   86 (272)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCCC---------TTGGGCTTCCEEECTTSCCCCC--GGGTTCTT
T ss_pred             HHHHHHhcCccccccc--ccccccceeeeeeCCCCcccc---------cccccCCCCcEEECCCCCCCCc--hhhcCCCC
Confidence            3344455555543332  245667777777777764322         1245566666666666665542  34555566


Q ss_pred             CCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccC
Q 002435          217 LTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSL  296 (922)
Q Consensus       217 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  296 (922)
                      |++|++++|.+++..+..++.+++|++|++++|++++..+..++.+++|++|++++|.+++..+..+..+++|++|++++
T Consensus        87 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  166 (272)
T 3rfs_A           87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY  166 (272)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC
Confidence            66666666655555444555555566666655555555444555555555555555555544444455555555555555


Q ss_pred             CCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccC
Q 002435          297 NRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFS  348 (922)
Q Consensus       297 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  348 (922)
                      |.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus       167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          167 NQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence            5555444444455555555555555555444444444555555555555443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=1.4e-23  Score=234.86  Aligned_cols=265  Identities=17%  Similarity=0.169  Sum_probs=128.0

Q ss_pred             CCccccCCCCCCEEECCCCCCCCcCc----hhhcCCCCCCEEEcCCCCCCCcccc---cCCChhHHHhcCCCCCEEEcCC
Q 002435          128 IPPEIINLSRLSYLNLSSAGFFGQIP----SEILELSNLVSLDLSHNSYYNLIEL---KEPNLGNLVKKLTNLKELALGG  200 (922)
Q Consensus       128 ~p~~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~n~~~~~~~~---~~~~l~~~~~~l~~L~~L~L~~  200 (922)
                      ++..+..+++|++|+|++|.+.+..+    ..+.++++|++|+|++|.+..+...   ....+...+..+++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            34444445555555555555543322    2233455555555555432211100   0001112224455555555555


Q ss_pred             CcCCC----CCchhccCCCCCCEEeccCccCCccCcccc----CCC---------CCCCEEeCcCCCCC-CCcc---ccc
Q 002435          201 VTISS----PIPHSLANLSSLTLLSLSGCELRGRIPSLL----GNL---------TKLMYLDLSFNNLL-GELP---TSI  259 (922)
Q Consensus       201 n~~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l----~~l---------~~L~~L~Ls~n~l~-~~~~---~~l  259 (922)
                      |.+++    .++..+..+++|++|+|++|.+.+..+..+    ..+         ++|++|++++|+++ +.++   ..+
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence            55544    234445555555555555555543222222    222         55555555555554 2222   234


Q ss_pred             CCCCCCcEEEcccCCCCC-----CchhhhhCCCCCCEEEccCCCCC----CCCcccccCCCCCcEEEeeccCCCCc----
Q 002435          260 GNLDCLKRLDISWNELSG-----ELPASIGNLASLEQLELSLNRFR----GKTPHSMGNFTRLYWLSLASNDFSGE----  326 (922)
Q Consensus       260 ~~l~~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~----  326 (922)
                      ..+++|++|++++|.++.     ..+..+..+++|++|+|++|.++    ..+|..+..+++|+.|+|++|.+++.    
T Consensus       184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~  263 (386)
T 2ca6_A          184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  263 (386)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence            455555555555555541     12224555555666666655553    33444555555566666665555543    


Q ss_pred             cccccc--CCCCCceEecCCCccCc----cCchhh-cCCCCccEEEccCCCCcCccc-hhhhhhccCCcceEeC
Q 002435          327 LPASFG--NLRSLEGLDISECKFSS----QIPSSL-RNLAQLKFLEFSHNNFSGPID-LDMFLVNFKHLEHLSL  392 (922)
Q Consensus       327 ~p~~l~--~l~~L~~L~Ls~n~l~~----~~~~~l-~~l~~L~~L~L~~n~l~~~~~-~~~~~~~l~~L~~L~L  392 (922)
                      ++..+.  .+++|++|+|++|.+++    .+|..+ .++++|++|++++|.+++..+ ...+...+++++.+++
T Consensus       264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l  337 (386)
T 2ca6_A          264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGEL  337 (386)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEE
T ss_pred             HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchh
Confidence            344442  26666666666666665    355555 446667777777776665443 2222233444444444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=2.4e-22  Score=217.49  Aligned_cols=229  Identities=17%  Similarity=0.196  Sum_probs=176.0

Q ss_pred             CceeeccCCcccCcCChh---hhhcCCccceEEccCccCCCCCCchh--hhccCcccEEEcCCCcccCCCc----ccccC
Q 002435          507 TKHYLVSNNSLTGKIPFW---ICNSSNSLEILDLSYNNLSGLLPQCL--DNFSDHLSILDLQHNKFCGSIP----QTFLS  577 (922)
Q Consensus       507 l~~L~ls~n~l~~~ip~~---~~~~~~~L~~L~Ls~N~l~~~~p~~l--~~l~~~L~~L~Ls~N~l~~~~p----~~~~~  577 (922)
                      ++.+.+.++.++...-..   ... +++|++|++++|.+++..|..+  ..++ +|++|++++|++++..+    ..+..
T Consensus        66 l~~l~l~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~-~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           66 VRRLTVGAAQVPAQLLVGALRVLA-YSRLKELTLEDLKITGTMPPLPLEATGL-ALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCEEEECSCCCBHHHHHHHHHHHH-HSCCCEEEEESCCCBSCCCCCSSSCCCB-CCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             eeEEEEeCCcCCHHHHHHHHHhcc-cCceeEEEeeCCEeccchhhhhhhccCC-CCCEEEeecccccchhhhhHHHHhhh
Confidence            455666665554321111   112 4679999999999999988887  7777 79999999999987655    44567


Q ss_pred             CCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccC---c-chhhcCCCCCCEEEcCCCcccccCCCCC-CCCCC
Q 002435          578 GRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGT---F-PSWLGTLRELNVLILKSNKLHGMIREPN-TGCGF  652 (922)
Q Consensus       578 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~---~-p~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~~~l  652 (922)
                      +++|++|+|++|++++..+..|..+++|++|+|++|++.+.   . +..+..+++|++|+|++|+++...+... ....+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            89999999999999988889999999999999999998753   2 2334789999999999999974322110 01356


Q ss_pred             CCccEEEccCCcCCCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccccccccce
Q 002435          653 PELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLT  732 (922)
Q Consensus       653 ~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  732 (922)
                      ++|+.|||++|++++.+|..+...                                                 ..++.|+
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~-------------------------------------------------~~~~~L~  254 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRC-------------------------------------------------MWSSALN  254 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSC-------------------------------------------------CCCTTCC
T ss_pred             CCCCEEECCCCCCCccchhhHHhc-------------------------------------------------cCcCcCC
Confidence            899999999999998777442110                                                 0025689


Q ss_pred             EEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcc
Q 002435          733 GVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSG  791 (922)
Q Consensus       733 ~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g  791 (922)
                      .|+|++|+|+ .+|..+.  ++|++|||++|++++. |. +..+++|+.|+|++|.++.
T Consensus       255 ~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          255 SLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             EEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            9999999999 7788775  8999999999999975 33 6888999999999999985

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=8.8e-21  Score=198.35  Aligned_cols=182  Identities=21%  Similarity=0.200  Sum_probs=126.2

Q ss_pred             cccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcC
Q 002435          556 HLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILK  635 (922)
Q Consensus       556 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  635 (922)
                      ..+.++++++.++ .+|..+.  ++++.|+|++|++++..+..|.++++|++|+|++|++++..|..|..+++|++|+|+
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            4566777777776 3444332  466777777777766666666666777777777776666666666666666666666


Q ss_pred             CCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeee
Q 002435          636 SNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTM  715 (922)
Q Consensus       636 ~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  715 (922)
                      +|++++..+..+  ..++                                                              
T Consensus        92 ~n~l~~~~~~~~--~~l~--------------------------------------------------------------  107 (251)
T 3m19_A           92 NNQLASLPLGVF--DHLT--------------------------------------------------------------  107 (251)
T ss_dssp             TSCCCCCCTTTT--TTCT--------------------------------------------------------------
T ss_pred             CCcccccChhHh--cccC--------------------------------------------------------------
Confidence            665554432222  2233                                                              


Q ss_pred             eecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcc
Q 002435          716 SNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQ  795 (922)
Q Consensus       716 ~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~  795 (922)
                                    .|+.|+|++|+|++..+..|+.+++|+.|+|++|++++..+..|+++++|++|+|++|++++..|.
T Consensus       108 --------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  173 (251)
T 3m19_A          108 --------------QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG  173 (251)
T ss_dssp             --------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             --------------CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence                          355566666666655555677788888888888888887777888888888888888888888888


Q ss_pred             cccCCCCCCeEeccCCccccCCC
Q 002435          796 QLVDLTFLEFFNVSNNNLTGPIP  818 (922)
Q Consensus       796 ~l~~L~~L~~L~ls~N~lsg~iP  818 (922)
                      .+.++++|++|++++|++++..+
T Consensus       174 ~~~~l~~L~~L~l~~N~~~c~~~  196 (251)
T 3m19_A          174 AFDRLGKLQTITLFGNQFDCSRC  196 (251)
T ss_dssp             TTTTCTTCCEEECCSCCBCTTST
T ss_pred             HHhCCCCCCEEEeeCCceeCCcc
Confidence            88888888888888888887643

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=2.6e-21  Score=200.88  Aligned_cols=196  Identities=20%  Similarity=0.197  Sum_probs=123.6

Q ss_pred             cccEEEcCCCcccCCCcccccCCCCccEEecCCCc-ccccCCccccCCCCCcEEECCC-CcCccCcchhhcCCCCCCEEE
Q 002435          556 HLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNL-LQGRIPRSLVNCSSLKFLDLGN-NQISGTFPSWLGTLRELNVLI  633 (922)
Q Consensus       556 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~  633 (922)
                      +|++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            57777777777776666667777777777777775 6666666777777777777776 777766666677777777777


Q ss_pred             cCCCcccccCCCCCCCCCCCCcc---EEEccCC-cCCCCCChhhhhccccceecccccccccccccccchhcccccccee
Q 002435          634 LKSNKLHGMIREPNTGCGFPELR---IIDLSNN-RFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIY  709 (922)
Q Consensus       634 L~~N~l~~~~~~~~~~~~l~~L~---~LdLs~N-~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  709 (922)
                      +++|++++. |.   +..+++|+   .|++++| .++ .+|...|..                                 
T Consensus       112 l~~n~l~~l-p~---~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~---------------------------------  153 (239)
T 2xwt_C          112 IFNTGLKMF-PD---LTKVYSTDIFFILEITDNPYMT-SIPVNAFQG---------------------------------  153 (239)
T ss_dssp             EEEECCCSC-CC---CTTCCBCCSEEEEEEESCTTCC-EECTTTTTT---------------------------------
T ss_pred             CCCCCCccc-cc---cccccccccccEEECCCCcchh-hcCcccccc---------------------------------
Confidence            777777663 32   24455555   6777766 554 222221111                                 


Q ss_pred             eeeeeeeecccccccccccccce-EEEeccccccccCcccccccCCCCEEeCCCcc-ccccCCccccCC-CCCCEEeCCC
Q 002435          710 DYSLTMSNKGQMMSYDKVPNFLT-GVILSSNRFDGEIPTSIANLKGLQVLSLANNS-LHGHILSCLGNL-TGLESLDLSN  786 (922)
Q Consensus       710 ~~~~~~~~~~~~~~~~~~~~~l~-~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~-l~~~ip~~l~~L-~~L~~L~Ls~  786 (922)
                                        .+.|+ .|++++|+++ .+|......++|+.|+|++|+ +++..+..|.++ ++|+.|||++
T Consensus       154 ------------------l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~  214 (239)
T 2xwt_C          154 ------------------LCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ  214 (239)
T ss_dssp             ------------------TBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred             ------------------hhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence                              23455 6666666666 444333233667777777774 776666667777 7777777777


Q ss_pred             CcCcccCcccccCCCCCCeEeccCC
Q 002435          787 NKFSGQIPQQLVDLTFLEFFNVSNN  811 (922)
Q Consensus       787 N~l~g~ip~~l~~L~~L~~L~ls~N  811 (922)
                      |++++..+.   .++.|+.|+++++
T Consensus       215 N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          215 TSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             CCCCCCCCT---TCTTCSEEECTTC
T ss_pred             CccccCChh---HhccCceeeccCc
Confidence            777754333   4556666766654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=7.4e-23  Score=229.00  Aligned_cols=248  Identities=19%  Similarity=0.223  Sum_probs=170.3

Q ss_pred             CcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCc---CCCCCchhc-------cCCCCCCE
Q 002435          150 GQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVT---ISSPIPHSL-------ANLSSLTL  219 (922)
Q Consensus       150 ~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~---~~~~~~~~l-------~~l~~L~~  219 (922)
                      ..++..+..+++|++|+|++|.+.....   ..++..+..+++|++|++++|.   +.+.+|..+       ..+++|++
T Consensus        22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~---~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~   98 (386)
T 2ca6_A           22 KSVFAVLLEDDSVKEIVLSGNTIGTEAA---RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT   98 (386)
T ss_dssp             HTTSHHHHHCSCCCEEECTTSEECHHHH---HHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred             HHHHHHHhcCCCccEEECCCCCCCHHHH---HHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccE
Confidence            3467778888999999999987532211   2244456788888888888864   444555554       67788888


Q ss_pred             EeccCccCCc----cCccccCCCCCCCEEeCcCCCCCCCccccc----CCC---------CCCcEEEcccCCCC-CCch-
Q 002435          220 LSLSGCELRG----RIPSLLGNLTKLMYLDLSFNNLLGELPTSI----GNL---------DCLKRLDISWNELS-GELP-  280 (922)
Q Consensus       220 L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l----~~l---------~~L~~L~L~~n~l~-~~~~-  280 (922)
                      |+|++|.+.+    .+|..+..+++|++|+|++|.+++..+..+    ..+         ++|++|++++|.++ +.++ 
T Consensus        99 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  178 (386)
T 2ca6_A           99 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE  178 (386)
T ss_dssp             EECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred             EECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH
Confidence            8888888876    466677788888888888888764433333    333         78888888888876 3444 


Q ss_pred             --hhhhCCCCCCEEEccCCCCCC-----CCcccccCCCCCcEEEeeccCCC----CcccccccCCCCCceEecCCCccCc
Q 002435          281 --ASIGNLASLEQLELSLNRFRG-----KTPHSMGNFTRLYWLSLASNDFS----GELPASFGNLRSLEGLDISECKFSS  349 (922)
Q Consensus       281 --~~l~~l~~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~Ls~n~l~~  349 (922)
                        ..+..+++|++|++++|.+..     ..+..+..+++|+.|+|++|.++    +.+|..+..+++|++|+|++|.+++
T Consensus       179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~  258 (386)
T 2ca6_A          179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  258 (386)
T ss_dssp             HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence              456677888888888887762     22336667778888888888775    4566677777788888888887775


Q ss_pred             c----CchhhcC--CCCccEEEccCCCCcC----ccchhhhhhccCCcceEeCcCccccccc
Q 002435          350 Q----IPSSLRN--LAQLKFLEFSHNNFSG----PIDLDMFLVNFKHLEHLSLSSNRLSLFT  401 (922)
Q Consensus       350 ~----~~~~l~~--l~~L~~L~L~~n~l~~----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  401 (922)
                      .    ++..+..  +++|+.|++++|.+++    .++...+ .++++|++|++++|.+++..
T Consensus       259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~-~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID-EKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH-HHCTTCCEEECTTSBSCTTS
T ss_pred             hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH-hcCCCceEEEccCCcCCcch
Confidence            4    4555533  7777778887777765    2433322 45677777777777776554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=3e-21  Score=200.35  Aligned_cols=204  Identities=20%  Similarity=0.256  Sum_probs=170.0

Q ss_pred             cCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCc-ccCCCcccccCCCCccEEecCC-CcccccCCc
Q 002435          520 KIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNK-FCGSIPQTFLSGRSLMMIDLSD-NLLQGRIPR  597 (922)
Q Consensus       520 ~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~~~  597 (922)
                      .+|. +   .++|++|++++|++++..+..|..++ +|++|++++|+ +++..+..|..+++|++|++++ |++++..+.
T Consensus        25 ~ip~-~---~~~l~~L~l~~n~l~~i~~~~~~~l~-~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~   99 (239)
T 2xwt_C           25 RIPS-L---PPSTQTLKLIETHLRTIPSHAFSNLP-NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD   99 (239)
T ss_dssp             SCCC-C---CTTCCEEEEESCCCSEECTTTTTTCT-TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred             ccCC-C---CCcccEEEEeCCcceEECHHHccCCC-CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence            4555 2   34789999999999987777888887 79999999997 8877777899999999999998 999988888


Q ss_pred             cccCCCCCcEEECCCCcCccCcchhhcCCCCCC---EEEcCCC-cccccCCCCCCCCCCCCcc-EEEccCCcCCCCCChh
Q 002435          598 SLVNCSSLKFLDLGNNQISGTFPSWLGTLRELN---VLILKSN-KLHGMIREPNTGCGFPELR-IIDLSNNRFTGKLPSK  672 (922)
Q Consensus       598 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~---~L~L~~N-~l~~~~~~~~~~~~l~~L~-~LdLs~N~l~g~ip~~  672 (922)
                      .|.++++|++|++++|++++ +|. |..+++|+   +|++++| ++++..+..+  .++++|+ .|++++|+++ .+|..
T Consensus       100 ~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~--~~l~~L~~~L~l~~n~l~-~i~~~  174 (239)
T 2xwt_C          100 ALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF--QGLCNETLTLKLYNNGFT-SVQGY  174 (239)
T ss_dssp             SEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT--TTTBSSEEEEECCSCCCC-EECTT
T ss_pred             HhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccc--cchhcceeEEEcCCCCCc-ccCHh
Confidence            99999999999999999997 555 88888888   9999999 8888765544  6789999 9999999987 66643


Q ss_pred             hhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEecccc-ccccCcccccc
Q 002435          673 YFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNR-FDGEIPTSIAN  751 (922)
Q Consensus       673 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~-l~g~ip~~~~~  751 (922)
                      .|.                                                    ...|+.|+|++|+ +++..+..|..
T Consensus       175 ~~~----------------------------------------------------~~~L~~L~L~~n~~l~~i~~~~~~~  202 (239)
T 2xwt_C          175 AFN----------------------------------------------------GTKLDAVYLNKNKYLTVIDKDAFGG  202 (239)
T ss_dssp             TTT----------------------------------------------------TCEEEEEECTTCTTCCEECTTTTTT
T ss_pred             hcC----------------------------------------------------CCCCCEEEcCCCCCcccCCHHHhhc
Confidence            221                                                    1358899999995 99777888999


Q ss_pred             c-CCCCEEeCCCccccccCCccccCCCCCCEEeCCCCc
Q 002435          752 L-KGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNK  788 (922)
Q Consensus       752 l-~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~  788 (922)
                      + ++|+.|||++|++++..+.   .+++|+.|+++++.
T Consensus       203 l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          203 VYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             CSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred             cccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence            9 9999999999999965444   67889999999873

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=1.9e-20  Score=201.94  Aligned_cols=210  Identities=21%  Similarity=0.293  Sum_probs=153.1

Q ss_pred             eEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCC
Q 002435          534 ILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNN  613 (922)
Q Consensus       534 ~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N  613 (922)
                      .+.+..+.+++.+  ....+. +|++|++++|.++. ++ .+..+++|++|++++|++++..+  +..+++|++|++++|
T Consensus        23 ~~~l~~~~~~~~~--~~~~l~-~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n   95 (308)
T 1h6u_A           23 KIAAGKSNVTDTV--TQADLD-GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN   95 (308)
T ss_dssp             HHHTTCSSTTSEE--CHHHHH-TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC
T ss_pred             HHHhCCCCcCcee--cHHHcC-CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC
Confidence            3445555555432  233455 57777777777764 33 46677778888888887775544  777788888888888


Q ss_pred             cCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceeccccccccccc
Q 002435          614 QISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEG  693 (922)
Q Consensus       614 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~  693 (922)
                      ++++.  ..+..+++|++|++++|++++..+    ...+++|+.|++++|++++..+   +..                 
T Consensus        96 ~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~---l~~-----------------  149 (308)
T 1h6u_A           96 PLKNV--SAIAGLQSIKTLDLTSTQITDVTP----LAGLSNLQVLYLDLNQITNISP---LAG-----------------  149 (308)
T ss_dssp             CCSCC--GGGTTCTTCCEEECTTSCCCCCGG----GTTCTTCCEEECCSSCCCCCGG---GGG-----------------
T ss_pred             cCCCc--hhhcCCCCCCEEECCCCCCCCchh----hcCCCCCCEEECCCCccCcCcc---ccC-----------------
Confidence            87754  357778888888888888776532    3567888888888888764221   110                 


Q ss_pred             ccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccc
Q 002435          694 MIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCL  773 (922)
Q Consensus       694 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l  773 (922)
                                                        .+.|+.|+|++|++++..+  +..+++|+.|+|++|++++..+  +
T Consensus       150 ----------------------------------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l  191 (308)
T 1h6u_A          150 ----------------------------------LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--L  191 (308)
T ss_dssp             ----------------------------------CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--G
T ss_pred             ----------------------------------CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--h
Confidence                                              2457888888888886444  8889999999999999987654  8


Q ss_pred             cCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccC
Q 002435          774 GNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGP  816 (922)
Q Consensus       774 ~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~  816 (922)
                      ..+++|+.|+|++|++++..|  +..+++|+.|++++|++++.
T Consensus       192 ~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             GGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred             cCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence            889999999999999998764  88999999999999999863

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=2.8e-20  Score=194.56  Aligned_cols=186  Identities=22%  Similarity=0.212  Sum_probs=163.2

Q ss_pred             CceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCC
Q 002435          486 GFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHN  565 (922)
Q Consensus       486 l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N  565 (922)
                      ...++++++.++..+...++.++.|++++|.+++..+..+.. +++|++|++++|.+++..+..|..++ +|++|++++|
T Consensus        16 ~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n   93 (251)
T 3m19_A           16 KKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRG-LTKLTWLNLDYNQLQTLSAGVFDDLT-ELGTLGLANN   93 (251)
T ss_dssp             GTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTT-CTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTS
T ss_pred             CeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcC-cccCCEEECCCCcCCccCHhHhccCC-cCCEEECCCC
Confidence            356777777777666666788999999999999877766666 89999999999999998888899888 7999999999


Q ss_pred             cccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCC
Q 002435          566 KFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIRE  645 (922)
Q Consensus       566 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~  645 (922)
                      ++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+.
T Consensus        94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  173 (251)
T 3m19_A           94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG  173 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence            99988888999999999999999999988888899999999999999999988888999999999999999999988765


Q ss_pred             CCCCCCCCCccEEEccCCcCCCC-CChhhhh
Q 002435          646 PNTGCGFPELRIIDLSNNRFTGK-LPSKYFQ  675 (922)
Q Consensus       646 ~~~~~~l~~L~~LdLs~N~l~g~-ip~~~~~  675 (922)
                      .+  ..+++|+.|++++|+++|. ....++.
T Consensus       174 ~~--~~l~~L~~L~l~~N~~~c~~~~~~~l~  202 (251)
T 3m19_A          174 AF--DRLGKLQTITLFGNQFDCSRCEILYLS  202 (251)
T ss_dssp             TT--TTCTTCCEEECCSCCBCTTSTTHHHHH
T ss_pred             HH--hCCCCCCEEEeeCCceeCCccccHHHH
Confidence            54  6789999999999999987 4444433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=4.8e-22  Score=218.04  Aligned_cols=199  Identities=22%  Similarity=0.301  Sum_probs=105.4

Q ss_pred             CCCeeeCCCCCCCCCCCCccccCC--CCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhc
Q 002435          112 HLEWLDLAFNYFICSEIPPEIINL--SRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKK  189 (922)
Q Consensus       112 ~L~~L~Ls~n~~~~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~  189 (922)
                      .++.++++++.+.    |..+..+  +++++|++++|.+.+..+. +.++++|++|++++|.+.      ...++..+..
T Consensus        48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~------~~~~~~~~~~  116 (336)
T 2ast_B           48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIE------VSTLHGILSQ  116 (336)
T ss_dssp             TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEEC------HHHHHHHHTT
T ss_pred             hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcC------HHHHHHHHhh
Confidence            3667777777653    4455555  6777777777777655444 556777777777777521      1124455566


Q ss_pred             CCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCc-cCCcc-CccccCCCCCCCEEeCcCC-CCCCC-cccccCCCC-C
Q 002435          190 LTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGC-ELRGR-IPSLLGNLTKLMYLDLSFN-NLLGE-LPTSIGNLD-C  264 (922)
Q Consensus       190 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~-~~~~l~~l~~L~~L~Ls~n-~l~~~-~~~~l~~l~-~  264 (922)
                      +++|++|++++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +
T Consensus       117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~  196 (336)
T 2ast_B          117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET  196 (336)
T ss_dssp             BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred             CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence            666666666666655555555555666666666655 34432 3444445555555555555 44432 334444455 5


Q ss_pred             CcEEEcccC--CCC-CCchhhhhCCCCCCEEEccCCC-CCCCCcccccCCCCCcEEEeecc
Q 002435          265 LKRLDISWN--ELS-GELPASIGNLASLEQLELSLNR-FRGKTPHSMGNFTRLYWLSLASN  321 (922)
Q Consensus       265 L~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n  321 (922)
                      |++|++++|  .++ +.++..+.++++|++|++++|. +++..+..+..+++|++|++++|
T Consensus       197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            555555555  233 2334444444444444444444 33333333333333333333333

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.84  E-value=3.7e-22  Score=221.02  Aligned_cols=252  Identities=19%  Similarity=0.165  Sum_probs=116.8

Q ss_pred             cCCCcCCCCCchhccCCCCCCEEeccCccCCccCc----cccCCCC-CCCEEeCcCCCCCCCcccccCCC-----CCCcE
Q 002435          198 LGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIP----SLLGNLT-KLMYLDLSFNNLLGELPTSIGNL-----DCLKR  267 (922)
Q Consensus       198 L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~----~~l~~l~-~L~~L~Ls~n~l~~~~~~~l~~l-----~~L~~  267 (922)
                      ++.|.+++.+|..+...++|++|++++|.+.+..+    ..+..++ +|++|+|++|.+++..+..+..+     ++|++
T Consensus         5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~   84 (362)
T 3goz_A            5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS   84 (362)
T ss_dssp             CCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred             cccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccE
Confidence            33344444444444433444444444444443333    3344444 44455554444444433333332     44555


Q ss_pred             EEcccCCCCCCchhhh----hCC-CCCCEEEccCCCCCCCCccccc----C-CCCCcEEEeeccCCCCc----ccccccC
Q 002435          268 LDISWNELSGELPASI----GNL-ASLEQLELSLNRFRGKTPHSMG----N-FTRLYWLSLASNDFSGE----LPASFGN  333 (922)
Q Consensus       268 L~L~~n~l~~~~~~~l----~~l-~~L~~L~L~~n~l~~~~~~~l~----~-l~~L~~L~L~~n~l~~~----~p~~l~~  333 (922)
                      |++++|.+++..+..+    ..+ ++|++|++++|.+++..+..+.    . .++|++|++++|.+++.    ++..+..
T Consensus        85 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~  164 (362)
T 3goz_A           85 LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAA  164 (362)
T ss_dssp             EECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHT
T ss_pred             EECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhc
Confidence            5555555444333322    222 4555555555555444333222    2 23555555555555432    2222333


Q ss_pred             CC-CCceEecCCCccCccCchh----hcCC-CCccEEEccCCCCcCccch--hhhhhc-cCCcceEeCcCcccccccc--
Q 002435          334 LR-SLEGLDISECKFSSQIPSS----LRNL-AQLKFLEFSHNNFSGPIDL--DMFLVN-FKHLEHLSLSSNRLSLFTK--  402 (922)
Q Consensus       334 l~-~L~~L~Ls~n~l~~~~~~~----l~~l-~~L~~L~L~~n~l~~~~~~--~~~~~~-l~~L~~L~Ls~n~l~~~~~--  402 (922)
                      ++ +|++|++++|++++..+..    +..+ ++|++|++++|.+.+....  ...+.. .++|++|++++|.++....  
T Consensus       165 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~  244 (362)
T 3goz_A          165 IPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLEN  244 (362)
T ss_dssp             SCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHH
T ss_pred             CCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHH
Confidence            33 5666666666655444432    2233 3566666666655431110  001112 3456666666666555433  


Q ss_pred             --ccccCCCCccEEEecCCCCCC--------CcccccCCCCccEEECcCCCCCCCCC
Q 002435          403 --AIFNTSQKFNFVGLRSCNLNE--------FPNFLKNQHYLEVLDLSCNKIHGKVP  449 (922)
Q Consensus       403 --~~~~~~~~L~~L~L~~~~l~~--------lp~~l~~~~~L~~L~Ls~n~l~~~~p  449 (922)
                        ..+..+++|+.|++++|.+..        ++..+..+++|++||+++|++.+..+
T Consensus       245 l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          245 LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence              223344555555555555332        22345566677777777777765533

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=8.2e-20  Score=196.95  Aligned_cols=195  Identities=25%  Similarity=0.335  Sum_probs=112.9

Q ss_pred             ccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhH
Q 002435          106 GLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGN  185 (922)
Q Consensus       106 ~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~  185 (922)
                      ....+++|++|++++|.+..  +| .+..+++|++|++++|.+.+ ++. +.++++|++|++++|++..+        + 
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~--------~-  101 (308)
T 1h6u_A           36 TQADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV--------S-  101 (308)
T ss_dssp             CHHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC--------G-
T ss_pred             cHHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc--------h-
Confidence            44567778888888877743  44 57777788888888877754 333 77777777777777765322        1 


Q ss_pred             HHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCC
Q 002435          186 LVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCL  265 (922)
Q Consensus       186 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  265 (922)
                      .+..+++|++|++++|.+++. + .+..+++|++|++++|++++..+  +..+++|++|++++|.+++..+  +..+++|
T Consensus       102 ~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L  175 (308)
T 1h6u_A          102 AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKL  175 (308)
T ss_dssp             GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred             hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCC
Confidence            355566666666666665552 2 25556666666666666554322  5555556666666665554322  5555555


Q ss_pred             cEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCC
Q 002435          266 KRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFS  324 (922)
Q Consensus       266 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  324 (922)
                      ++|++++|.+++..+  +..+++|++|++++|++.+..+  +..+++|+.|++++|.++
T Consensus       176 ~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          176 TTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred             CEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence            555555555553322  4555555555555555554332  444555555555555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=5.7e-20  Score=212.50  Aligned_cols=190  Identities=29%  Similarity=0.406  Sum_probs=130.2

Q ss_pred             CccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEE
Q 002435          530 NSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLD  609 (922)
Q Consensus       530 ~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  609 (922)
                      .+|+.|++++|++++ +|..+.  + +|++|++++|+|+ .+|   ..+++|++|++++|+|++ +|. +..  +|++|+
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l~--~-~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~  126 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNLP--P-QITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD  126 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCCC--T-TCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred             CCccEEEeCCCCCCc-cCHhHc--C-CCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence            378888888888876 565442  3 6888888888887 455   346778888888888876 555 554  788888


Q ss_pred             CCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceeccccccc
Q 002435          610 LGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELR  689 (922)
Q Consensus       610 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~  689 (922)
                      |++|++++ +|.   .+++|++|+|++|++++. |.     .+++|+.|+|++|++++ +|.  +               
T Consensus       127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-p~-----~l~~L~~L~Ls~N~L~~-lp~--l---------------  178 (571)
T 3cvr_A          127 VDNNQLTM-LPE---LPALLEYINADNNQLTML-PE-----LPTSLEVLSVRNNQLTF-LPE--L---------------  178 (571)
T ss_dssp             CCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC-----CCTTCCEEECCSSCCSC-CCC--C---------------
T ss_pred             CCCCcCCC-CCC---cCccccEEeCCCCccCcC-CC-----cCCCcCEEECCCCCCCC-cch--h---------------
Confidence            88888876 444   567788888888887763 33     35677777777777764 442  1               


Q ss_pred             ccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCC-------CEEeCCC
Q 002435          690 YMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGL-------QVLSLAN  762 (922)
Q Consensus       690 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L-------~~L~Ls~  762 (922)
                                                            .+.|+.|+|++|+|+ .+|. |..  +|       +.|+|++
T Consensus       179 --------------------------------------~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~  216 (571)
T 3cvr_A          179 --------------------------------------PESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRE  216 (571)
T ss_dssp             --------------------------------------CTTCCEEECCSSCCS-SCCC-CC----------CCEEEECCS
T ss_pred             --------------------------------------hCCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCC
Confidence                                                  023667777777777 5565 554  56       7777777


Q ss_pred             ccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCC
Q 002435          763 NSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTF  802 (922)
Q Consensus       763 N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~  802 (922)
                      |+|+ .+|..+..+++|+.|+|++|.|++.+|..+..++.
T Consensus       217 N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          217 NRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             SCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             Ccce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            7777 36666667777777777777777777777666543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=3e-20  Score=204.50  Aligned_cols=239  Identities=19%  Similarity=0.193  Sum_probs=157.5

Q ss_pred             eeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCc-ccccCCCCccE-EecC
Q 002435          510 YLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIP-QTFLSGRSLMM-IDLS  587 (922)
Q Consensus       510 L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~Ls  587 (922)
                      ++.++++++ .+|..+.   +++++|+|++|+|+...+..|.+++ +|++|+|++|++.+.+| ..|.+++++++ +.++
T Consensus        14 v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           14 FLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             EEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             EEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCC-CCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            344444444 4555442   3677777777777755555677776 68888888887765444 46677777664 5566


Q ss_pred             CCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCC-CcccccCCCCCCCCCC-CCccEEEccCCcC
Q 002435          588 DNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKS-NKLHGMIREPNTGCGF-PELRIIDLSNNRF  665 (922)
Q Consensus       588 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~l-~~L~~LdLs~N~l  665 (922)
                      +|+++...|+.|..+++|++|++++|++++..+..+....++..|++.+ |++....+..+  ..+ ..++.|++++|++
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f--~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF--VGLSFESVILWLNKNGI  166 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSS--TTSBSSCEEEECCSSCC
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccch--hhcchhhhhhccccccc
Confidence            7788877777888888888888888888777666666677777777755 45555433332  223 4577888888887


Q ss_pred             CCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccC
Q 002435          666 TGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEI  745 (922)
Q Consensus       666 ~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~i  745 (922)
                      + .+|...|.                                                    ...++.|++++|+..+.+
T Consensus       167 ~-~i~~~~f~----------------------------------------------------~~~L~~l~l~~~n~l~~i  193 (350)
T 4ay9_X          167 Q-EIHNSAFN----------------------------------------------------GTQLDELNLSDNNNLEEL  193 (350)
T ss_dssp             C-EECTTSST----------------------------------------------------TEEEEEEECTTCTTCCCC
T ss_pred             c-CCChhhcc----------------------------------------------------ccchhHHhhccCCcccCC
Confidence            6 34433221                                                    124677888754433355


Q ss_pred             c-ccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCc
Q 002435          746 P-TSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNN  812 (922)
Q Consensus       746 p-~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~  812 (922)
                      | ..|..+++|++|||++|+|+...+..|.+|   +.|.+.++.--..+| .+.++++|+.++++++.
T Consensus       194 ~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L---~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          194 PNDVFHGASGPVILDISRTRIHSLPSYGLENL---KKLRARSTYNLKKLP-TLEKLVALMEASLTYPS  257 (350)
T ss_dssp             CTTTTTTEECCSEEECTTSCCCCCCSSSCTTC---CEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred             CHHHhccCcccchhhcCCCCcCccChhhhccc---hHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence            5 567889999999999999987666555544   444444443333556 37888999999988764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=9.2e-20  Score=184.71  Aligned_cols=134  Identities=27%  Similarity=0.241  Sum_probs=68.1

Q ss_pred             ccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEEC
Q 002435          531 SLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDL  610 (922)
Q Consensus       531 ~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  610 (922)
                      +|++|++++|++++..+..+..++ +|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELT-SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCccCcCChhhhcccc-cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            455555555555544444444444 4555555555555444444555555555555555555444444555555555555


Q ss_pred             CCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCC
Q 002435          611 GNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTG  667 (922)
Q Consensus       611 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g  667 (922)
                      ++|++++..+..|..+++|++|++++|++++..+..+  ..+++|+.|++++|++.|
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF--DRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSCCBCC
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHh--ccCCCccEEEecCCCeec
Confidence            5555555444445555555555555555554433222  334555555555554443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=6.8e-19  Score=193.64  Aligned_cols=238  Identities=21%  Similarity=0.155  Sum_probs=142.0

Q ss_pred             EEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcc-cccCCCCCCcE-EEccc
Q 002435          195 ELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELP-TSIGNLDCLKR-LDISW  272 (922)
Q Consensus       195 ~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~-L~L~~  272 (922)
                      +++.++++++. +|..+  .+++++|+|++|+++...+.+|.++++|++|+|++|++.+.+| .+|.+++++++ +.+..
T Consensus        13 ~v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           13 VFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             EEEEESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             EEEecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            34444444442 34433  2467777777777775544567777777777777777765544 45677777664 45556


Q ss_pred             CCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeecc-CCCCcccccccCCC-CCceEecCCCccCcc
Q 002435          273 NELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASN-DFSGELPASFGNLR-SLEGLDISECKFSSQ  350 (922)
Q Consensus       273 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~  350 (922)
                      |+++...|..|..+++|++|++++|++....+..+....++..+++.++ .+....+..|..+. .++.|++++|+++. 
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-  168 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-  168 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-
Confidence            7777655667777777777777777777666666666666777777653 44433334455443 56777777777764 


Q ss_pred             CchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecC-CCCCCCccccc
Q 002435          351 IPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRS-CNLNEFPNFLK  429 (922)
Q Consensus       351 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~-~~l~~lp~~l~  429 (922)
                      ++.......+|+++++.+++..+.++...| ..+++|++|++++|+++.++...|..   |+.|.+.+ +.+..+|. +.
T Consensus       169 i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f-~~l~~L~~LdLs~N~l~~lp~~~~~~---L~~L~~l~~~~l~~lP~-l~  243 (350)
T 4ay9_X          169 IHNSAFNGTQLDELNLSDNNNLEELPNDVF-HGASGPVILDISRTRIHSLPSYGLEN---LKKLRARSTYNLKKLPT-LE  243 (350)
T ss_dssp             ECTTSSTTEEEEEEECTTCTTCCCCCTTTT-TTEECCSEEECTTSCCCCCCSSSCTT---CCEEECTTCTTCCCCCC-TT
T ss_pred             CChhhccccchhHHhhccCCcccCCCHHHh-ccCcccchhhcCCCCcCccChhhhcc---chHhhhccCCCcCcCCC-ch
Confidence            333344455677777765444445665554 56677777777777776666544333   33333222 23344442 44


Q ss_pred             CCCCccEEECcC
Q 002435          430 NQHYLEVLDLSC  441 (922)
Q Consensus       430 ~~~~L~~L~Ls~  441 (922)
                      .+++|+.+++++
T Consensus       244 ~l~~L~~l~l~~  255 (350)
T 4ay9_X          244 KLVALMEASLTY  255 (350)
T ss_dssp             TCCSCCEEECSC
T ss_pred             hCcChhhCcCCC
Confidence            455555555543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=2.6e-19  Score=207.07  Aligned_cols=205  Identities=21%  Similarity=0.260  Sum_probs=124.5

Q ss_pred             CCCCCCCCCCCCCc-----cccce-EecCCCCcEEEEECCCCCCCCcccCccccccCCCCCeeeCCCCCCCCCCCCcccc
Q 002435           60 TASWKPEEANIDCC-----LWDGV-ECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEII  133 (922)
Q Consensus        60 ~~~w~~~~~~~~~c-----~w~gv-~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~  133 (922)
                      +.+|..   +.++|     .|.|+ .|..  ++++.|+|+++.+++ ++.  .+  +++|++|+|++|.+.  .+|   .
T Consensus        33 l~~W~~---~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~--~l--~~~L~~L~Ls~N~l~--~ip---~   97 (571)
T 3cvr_A           33 WDKWEK---QALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPD--NL--PPQITVLEITQNALI--SLP---E   97 (571)
T ss_dssp             HHHHHT---TCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCS--CC--CTTCSEEECCSSCCS--CCC---C
T ss_pred             HHHHhc---cCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCH--hH--cCCCCEEECcCCCCc--ccc---c
Confidence            345644   34556     79999 7863  478999999999988 333  34  378999999999886  367   4


Q ss_pred             CCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccC
Q 002435          134 NLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLAN  213 (922)
Q Consensus       134 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~  213 (922)
                      .+++|++|+|++|.+++ +|. +.+  +|++|++++|+++.        +|.   .+++|++|++++|.+++ +|.   .
T Consensus        98 ~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~--------lp~---~l~~L~~L~Ls~N~l~~-lp~---~  158 (571)
T 3cvr_A           98 LPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM--------LPE---LPALLEYINADNNQLTM-LPE---L  158 (571)
T ss_dssp             CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC--------CCC---CCTTCCEEECCSSCCSC-CCC---C
T ss_pred             ccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC--------CCC---cCccccEEeCCCCccCc-CCC---c
Confidence            57889999999998866 776 654  88888888887533        222   45666666666666655 333   3


Q ss_pred             CCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCC-------cEEEcccCCCCCCchhhhhCC
Q 002435          214 LSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCL-------KRLDISWNELSGELPASIGNL  286 (922)
Q Consensus       214 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L-------~~L~L~~n~l~~~~~~~l~~l  286 (922)
                      +++|++|++++|.+++ +|. +.  ++|++|+|++|.++ .+|. +..  +|       +.|++++|.++ .+|..+..+
T Consensus       159 l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l  229 (571)
T 3cvr_A          159 PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSL  229 (571)
T ss_dssp             CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGS
T ss_pred             CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcC
Confidence            4566666666666654 444 43  55666666666555 3333 332  34       44455544444 344444444


Q ss_pred             CCCCEEEccCCCCCCCCcccc
Q 002435          287 ASLEQLELSLNRFRGKTPHSM  307 (922)
Q Consensus       287 ~~L~~L~L~~n~l~~~~~~~l  307 (922)
                      ++|+.|+|++|.+++..|..+
T Consensus       230 ~~L~~L~L~~N~l~~~~p~~l  250 (571)
T 3cvr_A          230 DPTCTIILEDNPLSSRIRESL  250 (571)
T ss_dssp             CTTEEEECCSSSCCHHHHHHH
T ss_pred             CCCCEEEeeCCcCCCcCHHHH
Confidence            444444444444444444333

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.78  E-value=1e-18  Score=177.00  Aligned_cols=175  Identities=22%  Similarity=0.190  Sum_probs=154.2

Q ss_pred             ceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCc
Q 002435          487 FTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNK  566 (922)
Q Consensus       487 ~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~  566 (922)
                      ..++++++.++..+...+++++.|++++|.+++. +...+..+++|++|++++|++++..+..|..++ +|++|++++|+
T Consensus        10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~   87 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT-SLTYLNLSTNQ   87 (208)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSC
T ss_pred             CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCC-CcCEEECCCCc
Confidence            5677777777777767788999999999999854 444444489999999999999987777788887 79999999999


Q ss_pred             ccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCC
Q 002435          567 FCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREP  646 (922)
Q Consensus       567 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~  646 (922)
                      +++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++.+     
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-----  162 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-----  162 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-----
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-----
Confidence            998888889999999999999999998888889999999999999999998888889999999999999998764     


Q ss_pred             CCCCCCCCccEEEccCCcCCCCCChh
Q 002435          647 NTGCGFPELRIIDLSNNRFTGKLPSK  672 (922)
Q Consensus       647 ~~~~~l~~L~~LdLs~N~l~g~ip~~  672 (922)
                          .+++|+.|+++.|+++|.+|..
T Consensus       163 ----~~~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          163 ----TCPGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             ----CTTTTHHHHHHHHHCTTTBBCT
T ss_pred             ----CCCCHHHHHHHHHhCCceeecc
Confidence                4678999999999999999964

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=1.3e-18  Score=177.42  Aligned_cols=163  Identities=21%  Similarity=0.214  Sum_probs=135.1

Q ss_pred             ceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCC-chhhhccCcccEEEcCCCcccCCCcccccCCCCccEEec
Q 002435          508 KHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLP-QCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDL  586 (922)
Q Consensus       508 ~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p-~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  586 (922)
                      +.+++++|.++ .+|..+.   ..+++|++++|++++..+ ..|..++ +|++|++++|+|++..+..|..+++|++|+|
T Consensus        14 ~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLP-QLRKINFSNNKITDIEEGAFEGASGVNEILL   88 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCC-CCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence            34555555555 3555443   356888888888887754 4577777 7999999999999888888999999999999


Q ss_pred             CCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCC
Q 002435          587 SDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFT  666 (922)
Q Consensus       587 s~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~  666 (922)
                      ++|++++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..|..+  ..+++|+.|++++|++.
T Consensus        89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF--DTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT--TTCTTCCEEECCSCCEE
T ss_pred             CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh--cCCCCCCEEEecCcCCc
Confidence            9999998888889999999999999999999889999999999999999999999877665  67899999999999999


Q ss_pred             CCCChhhhhcc
Q 002435          667 GKLPSKYFQCW  677 (922)
Q Consensus       667 g~ip~~~~~~~  677 (922)
                      |.++..++..|
T Consensus       167 c~c~l~~l~~~  177 (220)
T 2v70_A          167 CNCYLAWLGEW  177 (220)
T ss_dssp             CSGGGHHHHHH
T ss_pred             CCCchHHHHHH
Confidence            99987776544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=2.5e-18  Score=175.40  Aligned_cols=162  Identities=22%  Similarity=0.275  Sum_probs=136.7

Q ss_pred             eeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCC
Q 002435          509 HYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSD  588 (922)
Q Consensus       509 ~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  588 (922)
                      .++++++.++ .+|..+.   ++++.|++++|++++..+..|..++ +|++|+|++|+|++..|..|..+++|++|+|++
T Consensus        15 ~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~-~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           15 IVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             EEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCT-TCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             EEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCC-CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            3444444444 4554442   4788999999999887777888887 799999999999988899999999999999999


Q ss_pred             CcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCC
Q 002435          589 NLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGK  668 (922)
Q Consensus       589 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~  668 (922)
                      |+|+...+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+  ..+++|+.|++++|++.|.
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF--SPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCEECS
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH--hCCCCCCEEEeCCCCcCCC
Confidence            99998777788999999999999999999999999999999999999999998876544  6689999999999999998


Q ss_pred             CChhhhhcc
Q 002435          669 LPSKYFQCW  677 (922)
Q Consensus       669 ip~~~~~~~  677 (922)
                      +...|+..|
T Consensus       168 c~l~~l~~~  176 (220)
T 2v9t_B          168 CHLKWLADY  176 (220)
T ss_dssp             GGGHHHHHH
T ss_pred             CccHHHHHH
Confidence            887776543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=9.3e-18  Score=171.16  Aligned_cols=155  Identities=23%  Similarity=0.207  Sum_probs=140.6

Q ss_pred             ceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCc
Q 002435          487 FTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNK  566 (922)
Q Consensus       487 ~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~  566 (922)
                      ..+++++|.++..+...+..++.|++++|.+++..|...+..+++|++|++++|.+++..+..|..++ +|++|+|++|+
T Consensus        14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~   92 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-GVNEILLTSNR   92 (220)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSC
T ss_pred             CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC-CCCEEECCCCc
Confidence            46777788777766566778899999999999876665555599999999999999998888999988 79999999999


Q ss_pred             ccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCccccc
Q 002435          567 FCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGM  642 (922)
Q Consensus       567 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  642 (922)
                      +++..+..|..+++|++|+|++|+|++..|..|..+++|++|+|++|++++..|..|..+++|++|+|++|++.+.
T Consensus        93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999865

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=8.8e-18  Score=185.54  Aligned_cols=128  Identities=27%  Similarity=0.319  Sum_probs=72.9

Q ss_pred             ceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCccccc-CCCCccEEecCCCcccccCCccccCCCCCcEEECC
Q 002435          533 EILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFL-SGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLG  611 (922)
Q Consensus       533 ~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls  611 (922)
                      +.+++++++++. +|..+.   ..++.|+|++|+|++..+..|. .+++|++|+|++|+|++..+..|.++++|++|+|+
T Consensus        21 ~~l~c~~~~l~~-iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcCc-cCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            466777776663 454332   2466666666666655555555 56666666666666665555566666666666666


Q ss_pred             CCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCC
Q 002435          612 NNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFT  666 (922)
Q Consensus       612 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~  666 (922)
                      +|+|++..+..|..+++|++|+|++|++.+..+..+  .++++|+.|+|++|+++
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~L~~N~l~  149 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF--EDMAQLQKLYLSQNQIS  149 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh--CCcccCCEEECCCCcCC
Confidence            666665555555555555555555555555433332  33444444444444443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=1.5e-17  Score=177.48  Aligned_cols=173  Identities=25%  Similarity=0.238  Sum_probs=93.0

Q ss_pred             ccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhH
Q 002435          106 GLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGN  185 (922)
Q Consensus       106 ~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~  185 (922)
                      .+..+++|++|++++|.+..  ++ .+..+++|++|++++|.+.+. +. +.++++|++|++++|.+..+        + 
T Consensus        41 ~~~~l~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~--------~-  106 (291)
T 1h6t_A           41 TQNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKDL--------S-  106 (291)
T ss_dssp             CHHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCG--------G-
T ss_pred             chhhcCcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCCC--------h-
Confidence            34566777777777776642  33 366667777777777766443 32 66666677777766654221        1 


Q ss_pred             HHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCC
Q 002435          186 LVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCL  265 (922)
Q Consensus       186 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  265 (922)
                      .+..+++|++|++++|.+++                        .  ..+..+++|++|++++|.+++.  ..+..+++|
T Consensus       107 ~l~~l~~L~~L~L~~n~i~~------------------------~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L  158 (291)
T 1h6t_A          107 SLKDLKKLKSLSLEHNGISD------------------------I--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL  158 (291)
T ss_dssp             GGTTCTTCCEEECTTSCCCC------------------------C--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred             hhccCCCCCEEECCCCcCCC------------------------C--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCC
Confidence            14444444444444444443                        2  2344455555555555555433  344555555


Q ss_pred             cEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCC
Q 002435          266 KRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFS  324 (922)
Q Consensus       266 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  324 (922)
                      ++|++++|.+++..+  +..+++|++|++++|.+++. + .+..+++|+.|++++|.++
T Consensus       159 ~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          159 DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             SEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred             CEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence            555555555553322  55555555555555555532 2 2555555666666665554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=2.8e-17  Score=168.83  Aligned_cols=155  Identities=22%  Similarity=0.201  Sum_probs=131.5

Q ss_pred             ceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecC
Q 002435          508 KHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLS  587 (922)
Q Consensus       508 ~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  587 (922)
                      +.++.+++.++ .+|..+   .++|++|++++|++++..|..|..++ +|++|+|++|+|++..+..|..+++|++|+|+
T Consensus        22 ~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           22 TTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLI-NLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCcc-CCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            34555555544 555544   35789999999999988888888887 79999999999987777888999999999999


Q ss_pred             CCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCC
Q 002435          588 DNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTG  667 (922)
Q Consensus       588 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g  667 (922)
                      +|+|++..+..|..+++|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..+  ..+++|+.|++++|++.|
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAF--DRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECTTSCBCT
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHH--hCCCCCCEEEeeCCCccC
Confidence            99999888888999999999999999999 678888999999999999999998765444  678999999999999999


Q ss_pred             CCC
Q 002435          668 KLP  670 (922)
Q Consensus       668 ~ip  670 (922)
                      .++
T Consensus       174 ~c~  176 (229)
T 3e6j_A          174 ECR  176 (229)
T ss_dssp             TBG
T ss_pred             Ccc
Confidence            886

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=2.3e-17  Score=193.04  Aligned_cols=189  Identities=26%  Similarity=0.283  Sum_probs=122.5

Q ss_pred             EEEECCCCCCCCcccCccccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEc
Q 002435           88 IKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDL  167 (922)
Q Consensus        88 ~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  167 (922)
                      ..+++..+.+.+.+    .+..+++|+.|++++|.+..  +| .++.+++|++|+|++|.+.+..|  +..+++|++|+|
T Consensus        24 ~~l~l~~~~i~~~~----~~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L   94 (605)
T 1m9s_A           24 IKDNLKKKSVTDAV----TQNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHTTCSCTTSEE----CHHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred             HHHhccCCCccccc----chhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence            34455555555442    45677888888888888743  33 57788888888888888865433  778888888888


Q ss_pred             CCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCc
Q 002435          168 SHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLS  247 (922)
Q Consensus       168 s~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  247 (922)
                      ++|.+..+        + .+..+++|++|+|++|.+.+.  ..+..+++|+.|+|++|++.+.  ..+..+++|+.|+|+
T Consensus        95 s~N~l~~l--------~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls  161 (605)
T 1m9s_A           95 DENKIKDL--------S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLE  161 (605)
T ss_dssp             CSSCCCCC--------T-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECC
T ss_pred             cCCCCCCC--------h-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECc
Confidence            88875332        1 355666777777777766652  3466666677777766666644  456666666666666


Q ss_pred             CCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCC
Q 002435          248 FNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGK  302 (922)
Q Consensus       248 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  302 (922)
                      +|.+++..|  +..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+.+.
T Consensus       162 ~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          162 DNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             SSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             CCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence            666665544  66666666666666666642  2466666666666666666543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=5.4e-18  Score=187.20  Aligned_cols=184  Identities=23%  Similarity=0.151  Sum_probs=149.2

Q ss_pred             ceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCc
Q 002435          487 FTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNK  566 (922)
Q Consensus       487 ~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~  566 (922)
                      ..++++++.++..+...+..++.|++++|.+++..+..+...+++|+.|+|++|+|++..+..|..++ +|++|+|++|+
T Consensus        21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~   99 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-NLRYLDLSSNH   99 (361)
T ss_dssp             TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSC
T ss_pred             CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC-CCCEEECCCCc
Confidence            46777777777766566777889999999988655544441488999999999999988888888888 79999999999


Q ss_pred             ccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhh---cCCCCCCEEEcCCCcccccC
Q 002435          567 FCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWL---GTLRELNVLILKSNKLHGMI  643 (922)
Q Consensus       567 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~L~~N~l~~~~  643 (922)
                      |++..+..|..+++|++|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|   ..+++|+.|+|++|++++..
T Consensus       100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  179 (361)
T 2xot_A          100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP  179 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred             CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence            998888889999999999999999998889999999999999999999997666666   57899999999999998764


Q ss_pred             CCCCCCCCCCC--ccEEEccCCcCCCCCChhh
Q 002435          644 REPNTGCGFPE--LRIIDLSNNRFTGKLPSKY  673 (922)
Q Consensus       644 ~~~~~~~~l~~--L~~LdLs~N~l~g~ip~~~  673 (922)
                      +..+  ..++.  ++.|+|++|++.|.+...+
T Consensus       180 ~~~~--~~l~~~~l~~l~l~~N~~~C~C~l~~  209 (361)
T 2xot_A          180 LTDL--QKLPAWVKNGLYLHNNPLECDCKLYQ  209 (361)
T ss_dssp             HHHH--HHSCHHHHTTEECCSSCEECCHHHHH
T ss_pred             HHHh--hhccHhhcceEEecCCCccCCcCcHH
Confidence            3322  34555  4789999999998876443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.71  E-value=5.8e-17  Score=165.26  Aligned_cols=154  Identities=20%  Similarity=0.169  Sum_probs=138.4

Q ss_pred             ceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCc
Q 002435          487 FTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNK  566 (922)
Q Consensus       487 ~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~  566 (922)
                      ..++++++.++..+...+++++.|++++|.+++..+..+.. +++|+.|+|++|++++..|..|..++ +|++|+|++|+
T Consensus        14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~-l~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSP-YKKLRRIDLSNNQISELAPDAFQGLR-SLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTT-CTTCCEEECCSSCCCEECTTTTTTCS-SCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhC-CCCCCEEECCCCcCCCcCHHHhhCCc-CCCEEECCCCc
Confidence            56778888877776666789999999999998655544544 89999999999999999999999998 79999999999


Q ss_pred             ccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCccccc
Q 002435          567 FCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGM  642 (922)
Q Consensus       567 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  642 (922)
                      |++..+..|..+++|++|+|++|+|++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++...
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            9988788899999999999999999999999999999999999999999999888999999999999999998753

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.71  E-value=9e-17  Score=171.51  Aligned_cols=149  Identities=30%  Similarity=0.383  Sum_probs=65.9

Q ss_pred             ccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCC
Q 002435          211 LANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLE  290 (922)
Q Consensus       211 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  290 (922)
                      +..+++|++|++++|++++..+  +..+++|++|++++|.+++.  +.+..+++|++|++++|.+++.  ..+..+++|+
T Consensus        64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~  137 (291)
T 1h6t_A           64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLE  137 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCC
T ss_pred             HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCC
Confidence            3444444444444444443222  44444444444444444431  2244444555555555544432  2344445555


Q ss_pred             EEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCC
Q 002435          291 QLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNN  370 (922)
Q Consensus       291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~  370 (922)
                      +|++++|.+++.  ..+..+++|+.|++++|.+++..+  +..+++|++|++++|.+++. + .+..+++|+.|++++|.
T Consensus       138 ~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          138 SLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEE
T ss_pred             EEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCc
Confidence            555555544432  234444444444444444443222  44444444444444444431 2 24444444444444444


Q ss_pred             C
Q 002435          371 F  371 (922)
Q Consensus       371 l  371 (922)
                      +
T Consensus       212 i  212 (291)
T 1h6t_A          212 C  212 (291)
T ss_dssp             E
T ss_pred             c
Confidence            3

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.71  E-value=1.4e-18  Score=208.86  Aligned_cols=230  Identities=21%  Similarity=0.182  Sum_probs=97.3

Q ss_pred             CCHHHHHHHHHHhhcCCcCCCCCcccccCCCCCCCCCCCCCCCCCCCccccceEecCCCCcEEEEECCCCCCCCcccCcc
Q 002435           26 CHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCLWDGVECNENTGHVIKLDLSNSCLQGFINSSS  105 (922)
Q Consensus        26 ~~~~~~~all~~k~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~  105 (922)
                      ..+.+++||+++..........           ....|...  .+..+.|.++.+..  ++++.|+|.++.+.....   
T Consensus       129 ~~~~~~~~l~~~~~~~~~~~~~-----------~~~~~~~~--~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~~~---  190 (727)
T 4b8c_D          129 LVDCTKQALMEMADTLTDSKTA-----------KKQQPTGD--STPSGTATNSAVST--PLTPKIELFANGKDEANQ---  190 (727)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTT-----------C----------------------------------------------
T ss_pred             ccccchhhhhhhhhhcccccCc-----------ccCCCcCC--CCccccCCCceecC--CccceEEeeCCCCCcchh---
Confidence            4566889999998876433221           23456442  44567899988864  679999999888776421   


Q ss_pred             ccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhH
Q 002435          106 GLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGN  185 (922)
Q Consensus       106 ~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~  185 (922)
                      .     .|+.++|+.+.+.+               ++++.|.+. ..|..+..+++|++|+|++|.+.        .+|.
T Consensus       191 ~-----~l~~l~Ls~~~i~~---------------~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~--------~l~~  241 (727)
T 4b8c_D          191 A-----LLQHKKLSQYSIDE---------------DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF--------NISA  241 (727)
T ss_dssp             ----------------------------------------------------CCCCCCEEECTTSCCS--------CCCG
T ss_pred             h-----HhhcCccCcccccC---------------cccccccee-cChhhhccCCCCcEEECCCCCCC--------CCCh
Confidence            2     33444455444321               122222221 22333444444444444444431        1222


Q ss_pred             HHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCC
Q 002435          186 LVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCL  265 (922)
Q Consensus       186 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  265 (922)
                      .+.++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..|+.+++|
T Consensus       242 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L  318 (727)
T 4b8c_D          242 NIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNL  318 (727)
T ss_dssp             GGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTC
T ss_pred             hhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCc
Confidence            2334444444444444455 45666777777777777777777 56777777777777777777776 556667777777


Q ss_pred             cEEEcccCCCCCCchhhhhCCCC-CCEEEccCCCCCCCCcc
Q 002435          266 KRLDISWNELSGELPASIGNLAS-LEQLELSLNRFRGKTPH  305 (922)
Q Consensus       266 ~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~  305 (922)
                      ++|+|++|.+++.+|..+..+.. +..++|++|.+++.+|.
T Consensus       319 ~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          319 QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence            77777777777777766654322 22356777777766664

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=3.3e-17  Score=171.98  Aligned_cols=168  Identities=24%  Similarity=0.322  Sum_probs=98.7

Q ss_pred             cccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcC
Q 002435          556 HLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILK  635 (922)
Q Consensus       556 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  635 (922)
                      .+..+++++|.+++..  .+..+++|++|++++|+++. ++ .+..+++|++|+|++|++++..+  +..+++|++|+++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            3555556666655332  35556666666666666653 23 46666666666666666665444  5566666666666


Q ss_pred             CCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeee
Q 002435          636 SNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTM  715 (922)
Q Consensus       636 ~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  715 (922)
                      +|++++..+.    .. ++|+.                                                          
T Consensus        94 ~N~l~~l~~~----~~-~~L~~----------------------------------------------------------  110 (263)
T 1xeu_A           94 RNRLKNLNGI----PS-ACLSR----------------------------------------------------------  110 (263)
T ss_dssp             SSCCSCCTTC----CC-SSCCE----------------------------------------------------------
T ss_pred             CCccCCcCcc----cc-CcccE----------------------------------------------------------
Confidence            6665543111    01 34444                                                          


Q ss_pred             eecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcc
Q 002435          716 SNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQ  795 (922)
Q Consensus       716 ~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~  795 (922)
                                        |+|++|++++. | .++.+++|+.|+|++|++++. | .++.+++|+.|+|++|++++.  .
T Consensus       111 ------------------L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~  166 (263)
T 1xeu_A          111 ------------------LFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--G  166 (263)
T ss_dssp             ------------------EECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--T
T ss_pred             ------------------EEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--H
Confidence                              44444444432 2 355666666777777776654 2 466677777777777777665  5


Q ss_pred             cccCCCCCCeEeccCCccccC
Q 002435          796 QLVDLTFLEFFNVSNNNLTGP  816 (922)
Q Consensus       796 ~l~~L~~L~~L~ls~N~lsg~  816 (922)
                      .+..++.|+.|++++|++++.
T Consensus       167 ~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          167 GLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TSTTCCCCCEEEEEEEEEECC
T ss_pred             HhccCCCCCEEeCCCCcccCC
Confidence            566677777777777777655

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=8.3e-17  Score=188.35  Aligned_cols=191  Identities=23%  Similarity=0.218  Sum_probs=98.0

Q ss_pred             CCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhc
Q 002435          110 LVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKK  189 (922)
Q Consensus       110 l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~  189 (922)
                      +..+..++++.+.+...   ..+..+++|++|++++|.+.. +| .+..+++|++|+|++|++..+        +. +..
T Consensus        20 l~~l~~l~l~~~~i~~~---~~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~--------~~-l~~   85 (605)
T 1m9s_A           20 FAETIKDNLKKKSVTDA---VTQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI--------KP-LTN   85 (605)
T ss_dssp             HHHHHHHHTTCSCTTSE---ECHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCC--------GG-GGG
T ss_pred             HHHHHHHhccCCCcccc---cchhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCC--------hh-hcc
Confidence            34455566666655321   224566777777777777633 33 466677777777777764322        11 455


Q ss_pred             CCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEE
Q 002435          190 LTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLD  269 (922)
Q Consensus       190 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  269 (922)
                      +++|++|+|++|.+.+.  ..+..+++|++|+|++|++.+.  ..+..+++|+.|+|++|.+++.  ..+..+++|+.|+
T Consensus        86 l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~  159 (605)
T 1m9s_A           86 LKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLS  159 (605)
T ss_dssp             CTTCCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEE
T ss_pred             CCCCCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEE
Confidence            55555555555555541  2455555555555555555432  2344555555555555555433  3444455555555


Q ss_pred             cccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCC
Q 002435          270 ISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFS  324 (922)
Q Consensus       270 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  324 (922)
                      |++|.+++..|  +..+++|++|+|++|.+.+.  ..+..+++|+.|+|++|.+.
T Consensus       160 Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          160 LEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             CCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred             CcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence            55555543333  44445555555555544432  23444444444444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.70  E-value=1.8e-19  Score=209.68  Aligned_cols=86  Identities=31%  Similarity=0.429  Sum_probs=53.0

Q ss_pred             cceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccC-cccccCCCCCCeEec
Q 002435          730 FLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQI-PQQLVDLTFLEFFNV  808 (922)
Q Consensus       730 ~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~i-p~~l~~L~~L~~L~l  808 (922)
                      .|+.|+|++|+|+ .+|..|+++++|+.|+|++|+|++ +| .++++++|+.|+|++|+|++.+ |..+.++++|+.|++
T Consensus       464 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L  540 (567)
T 1dce_A          464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL  540 (567)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred             cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEe
Confidence            3555566666665 556666666666666666666665 44 5666666666666666666655 666666666666666


Q ss_pred             cCCccccCCC
Q 002435          809 SNNNLTGPIP  818 (922)
Q Consensus       809 s~N~lsg~iP  818 (922)
                      ++|++++.+|
T Consensus       541 ~~N~l~~~~~  550 (567)
T 1dce_A          541 QGNSLCQEEG  550 (567)
T ss_dssp             TTSGGGGSSS
T ss_pred             cCCcCCCCcc
Confidence            6666666555

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.69  E-value=2.6e-16  Score=161.58  Aligned_cols=154  Identities=22%  Similarity=0.198  Sum_probs=139.3

Q ss_pred             CceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCC
Q 002435          486 GFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHN  565 (922)
Q Consensus       486 l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N  565 (922)
                      ...++++++.++..+...+++++.|++++|.+++..|..+.. +++|++|+|++|+++...+..|..++ +|++|+|++|
T Consensus        21 ~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~L~~N~l~~i~~~~~~~l~-~L~~L~Ls~N   98 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDS-LINLKELYLGSNQLGALPVGVFDSLT-QLTVLDLGTN   98 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSS
T ss_pred             CCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhC-ccCCcEEECCCCCCCCcChhhcccCC-CcCEEECCCC
Confidence            457888888888777777899999999999999877776666 89999999999999877777788888 7999999999


Q ss_pred             cccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCccccc
Q 002435          566 KFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGM  642 (922)
Q Consensus       566 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  642 (922)
                      +|++..+..|..+++|++|+|++|+|+ .+|..+..+++|++|+|++|++++..+..|..+++|+.|++++|++.+.
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            999888888999999999999999999 6788999999999999999999988888899999999999999999865

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=2.6e-19  Score=208.40  Aligned_cols=122  Identities=29%  Similarity=0.358  Sum_probs=84.0

Q ss_pred             CCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEcc
Q 002435          216 SLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELS  295 (922)
Q Consensus       216 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  295 (922)
                      .|++|++++|.+++ +|. ++.+++|+.|+|++|.++ .+|..++++++|+.|+|++|.+++ +| .+..+++|++|+|+
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            46777777777764 454 777777777777777776 566677777777777777777774 55 67777777777777


Q ss_pred             CCCCCCCC-cccccCCCCCcEEEeeccCCCCcccc---cccCCCCCceEec
Q 002435          296 LNRFRGKT-PHSMGNFTRLYWLSLASNDFSGELPA---SFGNLRSLEGLDI  342 (922)
Q Consensus       296 ~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~L  342 (922)
                      +|.+++.. |..++.+++|+.|++++|.+++..|.   .+..+++|+.|++
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            77777665 77777777777777777777654332   1233677777754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=6e-17  Score=161.37  Aligned_cols=91  Identities=22%  Similarity=0.284  Sum_probs=82.5

Q ss_pred             ccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEec
Q 002435          729 NFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNV  808 (922)
Q Consensus       729 ~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~l  808 (922)
                      +.|+.|+|++|+|++.+|..|+.+++|++|+|++|+|++..|..|+++++|++|+|++|+|++.+|..+..+++|++|++
T Consensus        54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  133 (192)
T 1w8a_A           54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL  133 (192)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence            45778888888888888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccccCCCC
Q 002435          809 SNNNLTGPIPQ  819 (922)
Q Consensus       809 s~N~lsg~iP~  819 (922)
                      ++|+++|..|.
T Consensus       134 ~~N~l~c~c~l  144 (192)
T 1w8a_A          134 ASNPFNCNCHL  144 (192)
T ss_dssp             TTCCBCCSGGG
T ss_pred             CCCCccCcCcc
Confidence            99999988774

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=1.5e-16  Score=159.43  Aligned_cols=110  Identities=23%  Similarity=0.363  Sum_probs=54.3

Q ss_pred             ccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCC-CCCCchhhhhCCCCC
Q 002435          211 LANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNE-LSGELPASIGNLASL  289 (922)
Q Consensus       211 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L  289 (922)
                      +..+++|++|++++|++++..+..++.+++|++|++++|.+++..+..++.+++|++|++++|. ++ .+| .+..+++|
T Consensus        84 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L  161 (197)
T 4ezg_A           84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPEL  161 (197)
T ss_dssp             GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSC
T ss_pred             hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCC
Confidence            4444445555555555444444445555555555555555554444455555555555555554 33 333 35555555


Q ss_pred             CEEEccCCCCCCCCcccccCCCCCcEEEeeccCCC
Q 002435          290 EQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFS  324 (922)
Q Consensus       290 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  324 (922)
                      ++|++++|.+++..  .+..+++|+.|++++|++.
T Consensus       162 ~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          162 KSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred             CEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence            55555555555422  4455555555555555543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=2.7e-16  Score=156.56  Aligned_cols=138  Identities=22%  Similarity=0.266  Sum_probs=120.1

Q ss_pred             ceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcc-cccCCCCccEEecCCCcccccCCccccCCCCCcEEECC
Q 002435          533 EILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQ-TFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLG  611 (922)
Q Consensus       533 ~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls  611 (922)
                      +.+++++|+++ .+|..+..   ++++|++++|+|++..+. .|..+++|++|+|++|+|++..|..|.++++|++|+|+
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~---~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT---TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcC-cCccCCCC---CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            67888888886 56665432   699999999999877764 48899999999999999999889999999999999999


Q ss_pred             CCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhc
Q 002435          612 NNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQC  676 (922)
Q Consensus       612 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~  676 (922)
                      +|+|++..|..|..+++|++|+|++|++++..|..+  ..+++|+.|++++|+++|.++..++..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l~~~~~  149 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCHLAWFAE  149 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGGGHHHHH
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh--hcCCCCCEEEeCCCCccCcCcchHHHH
Confidence            999999988889999999999999999999887765  678999999999999999998776654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.66  E-value=3e-16  Score=157.09  Aligned_cols=151  Identities=14%  Similarity=0.229  Sum_probs=86.5

Q ss_pred             CCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEE
Q 002435          190 LTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLD  269 (922)
Q Consensus       190 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  269 (922)
                      +++|++|++++|.+.. +| .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+++..+..++.+++|++|+
T Consensus        43 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            3444444444444442 23 4566666777777766554  223566677777777777777665666666677777777


Q ss_pred             cccCCCCCCchhhhhCCCCCCEEEccCCC-CCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccC
Q 002435          270 ISWNELSGELPASIGNLASLEQLELSLNR-FRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFS  348 (922)
Q Consensus       270 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  348 (922)
                      +++|.+++..+..+..+++|++|++++|. +. .++ .+..+++|+.|++++|.+++ ++ .+..+++|++|++++|++.
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence            77777666566666666666666666665 43 223 45555555555555555543 22 3445555555555555443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.66  E-value=8.1e-17  Score=169.03  Aligned_cols=124  Identities=17%  Similarity=0.223  Sum_probs=96.5

Q ss_pred             CCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEE
Q 002435          529 SNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFL  608 (922)
Q Consensus       529 ~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  608 (922)
                      +.++..+++++|.+++..  .+..+. +|++|++++|.++. ++ .+..+++|++|++++|++++..+  +..+++|++|
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~-~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L   90 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELS-GVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHT-TCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcC-cCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence            446778889999888543  567777 79999999999985 44 68889999999999999997655  8999999999


Q ss_pred             ECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCC
Q 002435          609 DLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFT  666 (922)
Q Consensus       609 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~  666 (922)
                      ++++|++++..+  +.. ++|++|++++|++++..    ....+++|+.|++++|+++
T Consensus        91 ~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~~----~l~~l~~L~~L~Ls~N~i~  141 (263)
T 1xeu_A           91 SVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDTD----SLIHLKNLEILSIRNNKLK  141 (263)
T ss_dssp             ECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBSG----GGTTCTTCCEEECTTSCCC
T ss_pred             ECCCCccCCcCc--ccc-CcccEEEccCCccCCCh----hhcCcccccEEECCCCcCC
Confidence            999999987433  223 89999999999998752    1245666666666666654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.66  E-value=1.5e-17  Score=199.85  Aligned_cols=155  Identities=19%  Similarity=0.223  Sum_probs=83.2

Q ss_pred             CCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCC---------CCCchhhhccCcccEEEcCCCcccCCCccc
Q 002435          504 PPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSG---------LLPQCLDNFSDHLSILDLQHNKFCGSIPQT  574 (922)
Q Consensus       504 ~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~---------~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~  574 (922)
                      .+.++.+.+..|.+.. ++.      ..++.++|+.|.|.+         ..|..+..+. .|+.|+|++|.+. .+|..
T Consensus       172 ~~~~~~l~L~~n~~~~-~~~------~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~-~L~~L~Ls~n~l~-~l~~~  242 (727)
T 4b8c_D          172 TPLTPKIELFANGKDE-ANQ------ALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQ-LWHALDLSNLQIF-NISAN  242 (727)
T ss_dssp             ---------------------------------------------------------CCC-CCCEEECTTSCCS-CCCGG
T ss_pred             CCccceEEeeCCCCCc-chh------hHhhcCccCcccccCccccccceecChhhhccCC-CCcEEECCCCCCC-CCChh
Confidence            3456777777777764 232      234445555554443         2355566666 6778888888777 55555


Q ss_pred             ccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCC
Q 002435          575 FLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPE  654 (922)
Q Consensus       575 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~  654 (922)
                      +..+++|++|+|++|.|+ .+|..|.++++|++|+|++|+|+ .+|..|..+++|++|+|++|.++ .+|..+  ..+++
T Consensus       243 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~--~~l~~  317 (727)
T 4b8c_D          243 IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEF--GNLCN  317 (727)
T ss_dssp             GGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSST--TSCTT
T ss_pred             hcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhh--hcCCC
Confidence            667777888888888777 66777777788888888888877 55777777778888888887776 344443  56777


Q ss_pred             ccEEEccCCcCCCCCChh
Q 002435          655 LRIIDLSNNRFTGKLPSK  672 (922)
Q Consensus       655 L~~LdLs~N~l~g~ip~~  672 (922)
                      |+.|+|++|++++.+|..
T Consensus       318 L~~L~L~~N~l~~~~p~~  335 (727)
T 4b8c_D          318 LQFLGVEGNPLEKQFLKI  335 (727)
T ss_dssp             CCCEECTTSCCCSHHHHH
T ss_pred             ccEEeCCCCccCCCChHH
Confidence            777777777777666643

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.62  E-value=1.9e-15  Score=150.41  Aligned_cols=139  Identities=22%  Similarity=0.320  Sum_probs=119.5

Q ss_pred             ceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCC
Q 002435          533 EILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGN  612 (922)
Q Consensus       533 ~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~  612 (922)
                      +.+++++|.++ .+|..+.   ++|++|++++|+|+ .+|..|..+++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus        13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            57888888887 4565442   37999999999998 6678899999999999999999988888999999999999999


Q ss_pred             CcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccc
Q 002435          613 NQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWN  678 (922)
Q Consensus       613 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~  678 (922)
                      |+|++..|..|..+++|++|+|++|++++..+..+  ..+++|+.|++++|++.|.+...|+..|-
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~C~c~l~~l~~~~  151 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF--NDLSALSHLAIGANPLYCDCNMQWLSDWV  151 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh--hcCccccEEEeCCCCeecCCcCHHHHHHH
Confidence            99999888899999999999999999997755444  67899999999999999998888776553

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.58  E-value=4.1e-15  Score=161.89  Aligned_cols=100  Identities=20%  Similarity=0.184  Sum_probs=49.0

Q ss_pred             cccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCc-EEECCCCcCccCcchhhcCCCCCCEEEc
Q 002435          556 HLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLK-FLDLGNNQISGTFPSWLGTLRELNVLIL  634 (922)
Q Consensus       556 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  634 (922)
                      +|+.+++++|+++.+.+.+|.++.+|+.|+|.+| ++.+.+.+|.+|++|+ .+++.+ +++.+.+.+|.+|++|+.+++
T Consensus       227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l  304 (329)
T 3sb4_A          227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA  304 (329)
T ss_dssp             TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred             CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence            4555555555554444444555555555555554 4444444555555555 555554 444444455555555555555


Q ss_pred             CCCcccccCCCCCCCCCCCCccEEE
Q 002435          635 KSNKLHGMIREPNTGCGFPELRIID  659 (922)
Q Consensus       635 ~~N~l~~~~~~~~~~~~l~~L~~Ld  659 (922)
                      ++|++..+.+..+  .++++|+.|+
T Consensus       305 ~~n~i~~I~~~aF--~~~~~L~~ly  327 (329)
T 3sb4_A          305 TGDKITTLGDELF--GNGVPSKLIY  327 (329)
T ss_dssp             CSSCCCEECTTTT--CTTCCCCEEE
T ss_pred             CCCccCccchhhh--cCCcchhhhc
Confidence            5555544433222  3445555443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.57  E-value=1.4e-14  Score=142.31  Aligned_cols=133  Identities=20%  Similarity=0.201  Sum_probs=114.3

Q ss_pred             cceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECC
Q 002435          532 LEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLG  611 (922)
Q Consensus       532 L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls  611 (922)
                      .+.+++++|+++. +|..+.   ++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus         9 ~~~l~~~~~~l~~-~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLTS-VPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCSS-CCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCcc-CCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            5778888888874 454332   379999999999998877788899999999999999998888888999999999999


Q ss_pred             CCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCC
Q 002435          612 NNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLP  670 (922)
Q Consensus       612 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip  670 (922)
                      +|++++..+..+..+++|++|++++|++++..+..+  ..+++|+.|++++|++.|.+|
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHh--cCCcccCEEEecCCCeeccCc
Confidence            999998888889999999999999999997655433  568999999999999999887

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.55  E-value=1.1e-14  Score=141.61  Aligned_cols=134  Identities=18%  Similarity=0.152  Sum_probs=94.7

Q ss_pred             CccceEEccCccCC-CCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEE
Q 002435          530 NSLEILDLSYNNLS-GLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFL  608 (922)
Q Consensus       530 ~~L~~L~Ls~N~l~-~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  608 (922)
                      ++|+.|++++|.++ +.+|..+..++ +|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFV-NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGG-GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCC-CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            56777777777776 56666666666 677777777777755  567777777788888877777677777777778888


Q ss_pred             ECCCCcCccCc-chhhcCCCCCCEEEcCCCcccccCCC-CCCCCCCCCccEEEccCCcCC
Q 002435          609 DLGNNQISGTF-PSWLGTLRELNVLILKSNKLHGMIRE-PNTGCGFPELRIIDLSNNRFT  666 (922)
Q Consensus       609 ~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~~l~~L~~LdLs~N~l~  666 (922)
                      ++++|++++.. +..+..+++|++|++++|++++..+. ...+..+++|+.|++++|.+.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            88888777643 26677777788888888877765430 012255777888888877765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.55  E-value=1.5e-14  Score=140.72  Aligned_cols=132  Identities=24%  Similarity=0.317  Sum_probs=72.3

Q ss_pred             CCCCEEeccCccCC-ccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEE
Q 002435          215 SSLTLLSLSGCELR-GRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLE  293 (922)
Q Consensus       215 ~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  293 (922)
                      ++|++|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+.++++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            55666666666655 45555556666666666666666544  4556666666666666666655555555566666666


Q ss_pred             ccCCCCCCCCc-ccccCCCCCcEEEeeccCCCCccc---ccccCCCCCceEecCCCccC
Q 002435          294 LSLNRFRGKTP-HSMGNFTRLYWLSLASNDFSGELP---ASFGNLRSLEGLDISECKFS  348 (922)
Q Consensus       294 L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~Ls~n~l~  348 (922)
                      +++|.+++... ..+..+++|+.|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            66666554321 344455555555555555443322   23444455555555544443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.54  E-value=5e-15  Score=161.23  Aligned_cols=292  Identities=14%  Similarity=0.086  Sum_probs=168.3

Q ss_pred             CcCchhhcC--CCCCCEEEcCCCCCCCcccccCCChhHHHhc-CCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCcc
Q 002435          150 GQIPSEILE--LSNLVSLDLSHNSYYNLIELKEPNLGNLVKK-LTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCE  226 (922)
Q Consensus       150 ~~~p~~l~~--l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~-l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~  226 (922)
                      |.++..+..  +.+++.|.++++-     .  ...+ ..+.. +++|++|+|++|++..... .-+.++.++.+.+..+.
T Consensus        13 g~l~~~l~~~~~~~l~~L~l~g~i-----~--~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~-~~~~~~~~~~~~~~~~~   83 (329)
T 3sb4_A           13 GTLISMMTEEEANSITHLTLTGKL-----N--AEDF-RHLRDEFPSLKVLDISNAEIKMYSG-KAGTYPNGKFYIYMANF   83 (329)
T ss_dssp             TCGGGGSCHHHHHHCSEEEEEEEE-----C--HHHH-HHHHHSCTTCCEEEEEEEEECCEEE-SSSSSGGGCCEEECTTE
T ss_pred             CcHHhhccchhhCceeEEEEeccc-----c--HHHH-HHHHHhhccCeEEecCcceeEEecC-ccccccccccccccccc
Confidence            444444443  6788999998752     1  0112 23334 8889999999998872100 01122224445555543


Q ss_pred             CCccCccccCC--------CCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCC-
Q 002435          227 LRGRIPSLLGN--------LTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLN-  297 (922)
Q Consensus       227 l~~~~~~~l~~--------l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-  297 (922)
                      +.   +.+|.+        +++|+.|+|.+ .++...+.+|.+|++|+.|++.+|.+....+.+|..+.++..+.+..+ 
T Consensus        84 I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~  159 (329)
T 3sb4_A           84 VP---AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSD  159 (329)
T ss_dssp             EC---TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTH
T ss_pred             cC---HHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchh
Confidence            22   244555        88888888888 777666678888888999998888887666677777777777766552 


Q ss_pred             ---CCCCCCcccccCCCCCc-EEEeeccCCCCccccccc----CCCCCceEecCCCccCccCchhh-cCCCCccEEEccC
Q 002435          298 ---RFRGKTPHSMGNFTRLY-WLSLASNDFSGELPASFG----NLRSLEGLDISECKFSSQIPSSL-RNLAQLKFLEFSH  368 (922)
Q Consensus       298 ---~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~p~~l~----~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~  368 (922)
                         .........|..+..|+ .+.+....   .++..+.    ...+++.+.+.++-.. .....+ ..+++|+.+++++
T Consensus       160 ~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~  235 (329)
T 3sb4_A          160 AYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISK  235 (329)
T ss_dssp             HHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTT
T ss_pred             hhhccccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCC
Confidence               12223334455556665 34443221   1221111    1234444444433111 111111 2256666666666


Q ss_pred             CCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCcc-EEEecCCCCCCCc-ccccCCCCccEEECcCCCCCC
Q 002435          369 NNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFN-FVGLRSCNLNEFP-NFLKNQHYLEVLDLSCNKIHG  446 (922)
Q Consensus       369 n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~-~L~L~~~~l~~lp-~~l~~~~~L~~L~Ls~n~l~~  446 (922)
                      |+++ .++...| .++++|+.+++.+| ++.+...+|..+.+|+ .+++.+ .++.++ ..+.+|++|+.++++.|.++.
T Consensus       236 n~i~-~I~~~aF-~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~  311 (329)
T 3sb4_A          236 TNAT-TIPDFTF-AQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT  311 (329)
T ss_dssp             BCCC-EECTTTT-TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred             CCcc-eecHhhh-hCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence            6655 4554444 56666666666665 6666666666666676 666666 555554 356667777777777776665


Q ss_pred             CCCccccccCCCCccEEE
Q 002435          447 KVPKWLIEPSMQNFSYLN  464 (922)
Q Consensus       447 ~~p~~~~~~~l~~L~~L~  464 (922)
                      ..+..|.  .+++|+.++
T Consensus       312 I~~~aF~--~~~~L~~ly  327 (329)
T 3sb4_A          312 LGDELFG--NGVPSKLIY  327 (329)
T ss_dssp             ECTTTTC--TTCCCCEEE
T ss_pred             cchhhhc--CCcchhhhc
Confidence            5555555  666666664

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.54  E-value=3.6e-14  Score=141.11  Aligned_cols=128  Identities=30%  Similarity=0.347  Sum_probs=106.7

Q ss_pred             eeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCC
Q 002435          509 HYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSD  588 (922)
Q Consensus       509 ~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  588 (922)
                      .+++++|.++ .+|..+.   ++|++|++++|+++ .+|..|..+. +|++|++++|+|++..+..|..+++|++|+|++
T Consensus        14 ~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           14 VVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             EEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhccc-CCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            4455555554 4555442   47888999999887 6778888887 799999999999988888899999999999999


Q ss_pred             CcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCccccc
Q 002435          589 NLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGM  642 (922)
Q Consensus       589 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  642 (922)
                      |+|++..+..|.++++|++|+|++|+|++..+..|..+++|+.|+|++|++...
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence            999988888899999999999999999987777899999999999999998753

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.53  E-value=1.5e-14  Score=137.63  Aligned_cols=108  Identities=24%  Similarity=0.318  Sum_probs=59.6

Q ss_pred             CCCCEEeccCccCC-ccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEE
Q 002435          215 SSLTLLSLSGCELR-GRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLE  293 (922)
Q Consensus       215 ~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  293 (922)
                      ++|++|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            45566666666655 45555555666666666666666544  4555566666666666666654555555566666666


Q ss_pred             ccCCCCCCC-CcccccCCCCCcEEEeeccCCC
Q 002435          294 LSLNRFRGK-TPHSMGNFTRLYWLSLASNDFS  324 (922)
Q Consensus       294 L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~  324 (922)
                      +++|.+++. .+..+..+++|++|++++|.++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~  126 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT  126 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence            666655542 1233444444444444444444

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.51  E-value=7.2e-14  Score=137.10  Aligned_cols=131  Identities=24%  Similarity=0.253  Sum_probs=103.8

Q ss_pred             ceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecC
Q 002435          508 KHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLS  587 (922)
Q Consensus       508 ~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  587 (922)
                      +.++++++.++ .+|..+   .++|+.|++++|++++..+..+..++ +|++|++++|++++..+..|..+++|++|+++
T Consensus        10 ~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcc-cccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            34445555544 344433   34788888888888876666677776 79999999999987777778889999999999


Q ss_pred             CCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccC
Q 002435          588 DNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMI  643 (922)
Q Consensus       588 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  643 (922)
                      +|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            99999887778888999999999999998777777888999999999999887653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.50  E-value=3.1e-14  Score=135.36  Aligned_cols=128  Identities=23%  Similarity=0.262  Sum_probs=86.2

Q ss_pred             CCCCCEEeCcCCCCC-CCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEE
Q 002435          238 LTKLMYLDLSFNNLL-GELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWL  316 (922)
Q Consensus       238 l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  316 (922)
                      .++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            367788888888877 66777777778888888888877754  556777777777777777776666666666777777


Q ss_pred             EeeccCCCCc-ccccccCCCCCceEecCCCccCccCc---hhhcCCCCccEEEcc
Q 002435          317 SLASNDFSGE-LPASFGNLRSLEGLDISECKFSSQIP---SSLRNLAQLKFLEFS  367 (922)
Q Consensus       317 ~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~~---~~l~~l~~L~~L~L~  367 (922)
                      ++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            7777766642 23556666666666666666665433   345555555555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.46  E-value=1.6e-13  Score=133.35  Aligned_cols=90  Identities=22%  Similarity=0.195  Sum_probs=85.2

Q ss_pred             ccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEec
Q 002435          729 NFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNV  808 (922)
Q Consensus       729 ~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~l  808 (922)
                      ..++.|+|++|+|++..|..|+.+++|++|+|++|+|++..|..|.++++|++|+|++|+|++..|..|.++++|++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            45889999999999999999999999999999999999988888999999999999999999988888999999999999


Q ss_pred             cCCccccCCC
Q 002435          809 SNNNLTGPIP  818 (922)
Q Consensus       809 s~N~lsg~iP  818 (922)
                      ++|++.+..+
T Consensus       110 ~~N~~~c~c~  119 (170)
T 3g39_A          110 LNNPWDCACS  119 (170)
T ss_dssp             CSSCBCTTBG
T ss_pred             CCCCCCCCch
Confidence            9999998765

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.44  E-value=2e-15  Score=151.31  Aligned_cols=82  Identities=23%  Similarity=0.291  Sum_probs=62.8

Q ss_pred             ccceEEEeccccccccCcccccccCCCCEEeCCCccccccCC-ccccCCCCCCEEeCCCCcCcccCccc----------c
Q 002435          729 NFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHIL-SCLGNLTGLESLDLSNNKFSGQIPQQ----------L  797 (922)
Q Consensus       729 ~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip-~~l~~L~~L~~L~Ls~N~l~g~ip~~----------l  797 (922)
                      +.|+.|+|++|++++ +| .++.+++|+.|+|++|++++..+ ..+..+++|++|++++|.+++.+|..          +
T Consensus        93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~  170 (198)
T 1ds9_A           93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV  170 (198)
T ss_dssp             HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred             CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence            347778888888886 44 57788888888888888886443 56788888888888888888877653          7


Q ss_pred             cCCCCCCeEeccCCccc
Q 002435          798 VDLTFLEFFNVSNNNLT  814 (922)
Q Consensus       798 ~~L~~L~~L~ls~N~ls  814 (922)
                      ..++.|+.||  +|.++
T Consensus       171 ~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          171 KRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHCSSCSEEC--CGGGT
T ss_pred             HhCCCcEEEC--CcccC
Confidence            7888888887  56554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.43  E-value=4.8e-13  Score=129.98  Aligned_cols=109  Identities=23%  Similarity=0.247  Sum_probs=72.1

Q ss_pred             ccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCC
Q 002435          557 LSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKS  636 (922)
Q Consensus       557 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  636 (922)
                      .+.+++++|+++. +|..+  .++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus        11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            4455555555553 34333  25666666666666666666667777777777777777766666667777777777777


Q ss_pred             CcccccCCCCCCCCCCCCccEEEccCCcCCCCCC
Q 002435          637 NKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLP  670 (922)
Q Consensus       637 N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip  670 (922)
                      |++++..+..+  ..+++|+.|+|++|+++|.++
T Consensus        88 N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           88 NQLKSIPRGAF--DNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SCCCCCCTTTT--TTCTTCCEEECCSSCBCTTBG
T ss_pred             CccCEeCHHHh--cCCCCCCEEEeCCCCCCCCch
Confidence            77776554433  567788888888888887775

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.42  E-value=4.8e-13  Score=130.42  Aligned_cols=90  Identities=22%  Similarity=0.212  Sum_probs=83.9

Q ss_pred             ccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEec
Q 002435          729 NFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNV  808 (922)
Q Consensus       729 ~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~l  808 (922)
                      ..++.|+|++|+|++..|..|+++++|+.|+|++|+|++..+..|+++++|++|+|++|+|++..+..+.++++|++|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            46889999999999999999999999999999999999988888899999999999999999888888999999999999


Q ss_pred             cCCccccCCC
Q 002435          809 SNNNLTGPIP  818 (922)
Q Consensus       809 s~N~lsg~iP  818 (922)
                      ++|++.+..+
T Consensus       113 ~~N~~~c~~~  122 (174)
T 2r9u_A          113 YNNPWDCECR  122 (174)
T ss_dssp             CSSCBCTTBG
T ss_pred             CCCCcccccc
Confidence            9999987654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.41  E-value=7.1e-12  Score=139.22  Aligned_cols=249  Identities=9%  Similarity=0.100  Sum_probs=131.0

Q ss_pred             hhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCC
Q 002435          209 HSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLAS  288 (922)
Q Consensus       209 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  288 (922)
                      .+|.++ +|+.+.+..+ ++..-..+|.++ +|+.+.+.. .+....+.+|.+|++|+.+++..|.++.....+|. +.+
T Consensus       130 ~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~  204 (401)
T 4fdw_A          130 DAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAG  204 (401)
T ss_dssp             TTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCC
T ss_pred             hhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecc
Confidence            334443 4555555443 333333344442 455555553 34433344555555555555555555532222333 455


Q ss_pred             CCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccC
Q 002435          289 LEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSH  368 (922)
Q Consensus       289 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~  368 (922)
                      |+.+.+..+ +.......|.++++|+.+.+..+ ++..-...|.+ .+|+.+.+ .+.++.....+|.++++|+.+++.+
T Consensus       205 L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~  280 (401)
T 4fdw_A          205 IEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYG  280 (401)
T ss_dssp             CSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEES
T ss_pred             cCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCC
Confidence            555555532 44444455555555555555543 33222333444 45666666 2334434445566666666666665


Q ss_pred             CCCc----CccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCc-ccccCCCCccEEECcCCC
Q 002435          369 NNFS----GPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFP-NFLKNQHYLEVLDLSCNK  443 (922)
Q Consensus       369 n~l~----~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp-~~l~~~~~L~~L~Ls~n~  443 (922)
                      +.+.    ..++...| .++++|+.+++. +.++.+...+|..+.+|+.+.+..+ ++.++ ..+.++ +|+.+++++|.
T Consensus       281 ~~~~~~~~~~I~~~aF-~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          281 STFNDDPEAMIHPYCL-EGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             SCCCCCTTCEECTTTT-TTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred             ccccCCcccEECHHHh-hCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence            5442    12444444 667777777776 3466667777777777777777443 55444 355666 77777777776


Q ss_pred             CCCCCCccccccCC-CCccEEEccCCcccc
Q 002435          444 IHGKVPKWLIEPSM-QNFSYLNLSHNFLIG  472 (922)
Q Consensus       444 l~~~~p~~~~~~~l-~~L~~L~L~~n~l~~  472 (922)
                      +....+..|.  .+ .+++.|.+..+.+..
T Consensus       357 ~~~l~~~~F~--~~~~~l~~l~vp~~~~~~  384 (401)
T 4fdw_A          357 PPQVFEKVWY--GFPDDITVIRVPAESVEK  384 (401)
T ss_dssp             CCBCCCSSCC--CSCTTCCEEEECGGGHHH
T ss_pred             Cccccccccc--CCCCCccEEEeCHHHHHH
Confidence            6544444443  34 356677776665543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.40  E-value=3.2e-13  Score=132.31  Aligned_cols=132  Identities=18%  Similarity=0.177  Sum_probs=103.0

Q ss_pred             CCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEE
Q 002435          529 SNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFL  608 (922)
Q Consensus       529 ~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  608 (922)
                      +.+|+.|++++|+++. +|. +..+.++|++|++++|.+++.  ..+..+++|++|++++|++++..+..+..+++|++|
T Consensus        18 ~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             TTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            6688899999998885 354 445444799999999999865  578888999999999999987766667889999999


Q ss_pred             ECCCCcCccCcch--hhcCCCCCCEEEcCCCcccccCCCC--CCCCCCCCccEEEccCCcCC
Q 002435          609 DLGNNQISGTFPS--WLGTLRELNVLILKSNKLHGMIREP--NTGCGFPELRIIDLSNNRFT  666 (922)
Q Consensus       609 ~Ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~~~~--~~~~~l~~L~~LdLs~N~l~  666 (922)
                      ++++|+++. +|.  .+..+++|+.|++++|++... |..  .....+++|+.||+++|...
T Consensus        94 ~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           94 ILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             ECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             ECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHH
Confidence            999999964 454  788899999999999998754 221  01256788889988888754

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.40  E-value=3.8e-12  Score=142.10  Aligned_cols=79  Identities=19%  Similarity=0.179  Sum_probs=33.8

Q ss_pred             CCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEE
Q 002435          529 SNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFL  608 (922)
Q Consensus       529 ~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  608 (922)
                      +.+|+.+.+..+ ++.....+|.++. +|+.+++.++ ++.+-..+|.++.+|+.+++..+ ++.+...+|.+|++|+.+
T Consensus       296 ~~~L~~i~l~~~-i~~I~~~aF~~c~-~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i  371 (394)
T 4fs7_A          296 CSSLTEVKLLDS-VKFIGEEAFESCT-SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKV  371 (394)
T ss_dssp             CTTCCEEEECTT-CCEECTTTTTTCT-TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEE
T ss_pred             cccccccccccc-cceechhhhcCCC-CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEE
Confidence            444555544332 3322333444443 3444444322 33333344444444554444433 333334444444444444


Q ss_pred             ECC
Q 002435          609 DLG  611 (922)
Q Consensus       609 ~Ls  611 (922)
                      ++.
T Consensus       372 ~lp  374 (394)
T 4fs7_A          372 ELP  374 (394)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.39  E-value=1e-11  Score=137.95  Aligned_cols=216  Identities=11%  Similarity=0.122  Sum_probs=99.4

Q ss_pred             CCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccC
Q 002435          217 LTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSL  296 (922)
Q Consensus       217 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  296 (922)
                      |+.+.+.. .+...-+.+|.++++|+.++++.|+++.....+|. +.+|+.+.+..+ ++..-..+|.++++|+.+++..
T Consensus       159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred             ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence            44444443 23323333444444444444444444433223333 344444444422 3322333444444444444443


Q ss_pred             CCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccC-----ccCchhhcCCCCccEEEccCCCC
Q 002435          297 NRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFS-----SQIPSSLRNLAQLKFLEFSHNNF  371 (922)
Q Consensus       297 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l  371 (922)
                      + ++......|.+ .+|+.+.+. +.++..-...|.+|++|+.+++.+|.+.     ...+.+|.+|++|+.+++.+ .+
T Consensus       236 ~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i  311 (401)
T 4fdw_A          236 N-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SI  311 (401)
T ss_dssp             T-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TC
T ss_pred             C-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ce
Confidence            2 23233333433 445555552 2233233344555555555555444432     22334455555666666553 23


Q ss_pred             cCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcc-cccCC-CCccEEECcCCC
Q 002435          372 SGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPN-FLKNQ-HYLEVLDLSCNK  443 (922)
Q Consensus       372 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~-~l~~~-~~L~~L~Ls~n~  443 (922)
                      + .++...| .++++|+.+.+..+ ++.+...+|..+ +|+.+.+.++.+..++. .+..+ ..++.|.+..+.
T Consensus       312 ~-~I~~~aF-~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          312 R-ILGQGLL-GGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             C-EECTTTT-TTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             E-EEhhhhh-cCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            2 3444444 55566666666333 555555666666 66666666665554432 33333 355666665544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.39  E-value=1.6e-12  Score=126.79  Aligned_cols=108  Identities=19%  Similarity=0.234  Sum_probs=61.4

Q ss_pred             cEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCC
Q 002435          558 SILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSN  637 (922)
Q Consensus       558 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  637 (922)
                      +.+++++|+++ .+|..+.  ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            34444444443 2333322  45555555555555555555666666666666666666555555566666666666666


Q ss_pred             cccccCCCCCCCCCCCCccEEEccCCcCCCCCC
Q 002435          638 KLHGMIREPNTGCGFPELRIIDLSNNRFTGKLP  670 (922)
Q Consensus       638 ~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip  670 (922)
                      ++++..+..+  ..+++|+.|+|++|++.+.++
T Consensus        92 ~l~~l~~~~~--~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGAF--DNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCTTTT--TTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCHHHh--ccccCCCEEEeCCCCcccccc
Confidence            6665443322  456777777777777776554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.38  E-value=1.5e-14  Score=144.78  Aligned_cols=152  Identities=23%  Similarity=0.243  Sum_probs=101.9

Q ss_pred             CCceeeccCCcccCcCCh------hhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCC
Q 002435          506 QTKHYLVSNNSLTGKIPF------WICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGR  579 (922)
Q Consensus       506 ~l~~L~ls~n~l~~~ip~------~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~  579 (922)
                      .++.++++.+.++|.+|.      .+.. +++|++|++++|.+++ +| .+..++ +|++|++++|+++ .+|..+..++
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~-l~~L~~L~ls~n~l~~-l~-~~~~l~-~L~~L~l~~n~l~-~l~~~~~~~~   93 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLST-LKACKHLALSTNNIEK-IS-SLSGME-NLRILSLGRNLIK-KIENLDAVAD   93 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHH-TTTCSEEECSEEEESC-CC-CHHHHT-TCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhc-CCCCCEEECCCCCCcc-cc-ccccCC-CCCEEECCCCCcc-cccchhhcCC
Confidence            344445555555555554      5555 7778888888888876 55 677776 6888888888877 4566666677


Q ss_pred             CccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcc-hhhcCCCCCCEEEcCCCcccccCCCC--------CCCC
Q 002435          580 SLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFP-SWLGTLRELNVLILKSNKLHGMIREP--------NTGC  650 (922)
Q Consensus       580 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~--------~~~~  650 (922)
                      +|++|++++|++++. | .+..+++|++|++++|++++..+ ..+..+++|++|++++|++.+.+|..        ....
T Consensus        94 ~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~  171 (198)
T 1ds9_A           94 TLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK  171 (198)
T ss_dssp             HCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred             cCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence            788888888888753 3 57777788888888888775433 46777778888888888777665442        0113


Q ss_pred             CCCCccEEEccCCcCC
Q 002435          651 GFPELRIIDLSNNRFT  666 (922)
Q Consensus       651 ~l~~L~~LdLs~N~l~  666 (922)
                      .+++|+.||  +|+++
T Consensus       172 ~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          172 RLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HCSSCSEEC--CGGGT
T ss_pred             hCCCcEEEC--CcccC
Confidence            456666665  55544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.35  E-value=1e-12  Score=128.61  Aligned_cols=105  Identities=18%  Similarity=0.165  Sum_probs=51.1

Q ss_pred             CCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcc--cccCCCCCcEEE
Q 002435          240 KLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPH--SMGNFTRLYWLS  317 (922)
Q Consensus       240 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~  317 (922)
                      +|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.. +|.  .+..+++|+.|+
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~  119 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLC  119 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEE
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEE
Confidence            444444444444432  344444555555555555543222333455555555555555532 222  444555555555


Q ss_pred             eeccCCCCccccc----ccCCCCCceEecCCCccC
Q 002435          318 LASNDFSGELPAS----FGNLRSLEGLDISECKFS  348 (922)
Q Consensus       318 L~~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l~  348 (922)
                      +++|.++ .+|..    +..+++|++|+++.|...
T Consensus       120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            5555554 23332    555666666666666543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.34  E-value=1.5e-11  Score=137.15  Aligned_cols=61  Identities=10%  Similarity=0.011  Sum_probs=30.7

Q ss_pred             ccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEc
Q 002435          232 PSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLEL  294 (922)
Q Consensus       232 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  294 (922)
                      ..+|.++++|+.+.+..+ ++..-..+|.++++|+.+++..+ ++..-..+|.++.+|+.+.+
T Consensus        64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~  124 (394)
T 4fs7_A           64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILL  124 (394)
T ss_dssp             TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcc
Confidence            345556666666666532 44333445566666666665433 33222334555555554443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.20  E-value=3.8e-11  Score=131.60  Aligned_cols=114  Identities=18%  Similarity=0.220  Sum_probs=70.9

Q ss_pred             EEcCCC-cccCCCcccccCCCCccEEecCC-CcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCC
Q 002435          560 LDLQHN-KFCGSIPQTFLSGRSLMMIDLSD-NLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSN  637 (922)
Q Consensus       560 L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  637 (922)
                      ++++++ ++++ +|. +..+++|++|+|++ |+|++..+..|.++++|++|+|++|+|++..|..|..+++|+.|+|++|
T Consensus        13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            455555 5553 444 55666666666664 6666666666666666666666666666666666666666666666666


Q ss_pred             cccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccc
Q 002435          638 KLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWN  678 (922)
Q Consensus       638 ~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~  678 (922)
                      +|++..+..+  ..++ |+.|+|++|+|.+.+...++..|.
T Consensus        91 ~l~~~~~~~~--~~~~-L~~l~l~~N~~~c~c~l~~~~~~~  128 (347)
T 2ifg_A           91 ALESLSWKTV--QGLS-LQELVLSGNPLHCSCALRWLQRWE  128 (347)
T ss_dssp             CCSCCCSTTT--CSCC-CCEEECCSSCCCCCGGGHHHHHHH
T ss_pred             ccceeCHHHc--ccCC-ceEEEeeCCCccCCCccHHHHHHH
Confidence            6665544333  2233 777777777777777666665543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.17  E-value=1.4e-12  Score=143.42  Aligned_cols=161  Identities=21%  Similarity=0.224  Sum_probs=84.2

Q ss_pred             CCCCEEECCCCCCCCcCchhhcC-----CCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchh
Q 002435          136 SRLSYLNLSSAGFFGQIPSEILE-----LSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHS  210 (922)
Q Consensus       136 ~~L~~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~  210 (922)
                      ++|++|+|++|.++......+..     .++|++|+|++|.+..      ..+......+++|++|+|++|.++......
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~------~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~  145 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP------AGLRTLLPVFLRARKLGLQLNSLGPEACKD  145 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH------HHHHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH------HHHHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence            44556666666554332222222     2466666666665321      112222233445666666666655433333


Q ss_pred             c-----cCCCCCCEEeccCccCCcc----CccccCCCCCCCEEeCcCCCCCCC----cccccCCCCCCcEEEcccCCCCC
Q 002435          211 L-----ANLSSLTLLSLSGCELRGR----IPSLLGNLTKLMYLDLSFNNLLGE----LPTSIGNLDCLKRLDISWNELSG  277 (922)
Q Consensus       211 l-----~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~  277 (922)
                      +     ...++|++|+|++|.++..    ++..+..+++|++|+|++|.+++.    ++..+...++|++|+|++|.+++
T Consensus       146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence            3     2345666666666666532    333345566666777766666532    23445555666666666666653


Q ss_pred             C----chhhhhCCCCCCEEEccCCCCCCC
Q 002435          278 E----LPASIGNLASLEQLELSLNRFRGK  302 (922)
Q Consensus       278 ~----~~~~l~~l~~L~~L~L~~n~l~~~  302 (922)
                      .    +...+...++|++|+|++|.++..
T Consensus       226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          226 TAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            2    333344556666666666666543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.17  E-value=4e-11  Score=131.41  Aligned_cols=87  Identities=18%  Similarity=0.164  Sum_probs=62.4

Q ss_pred             ccceEEEecc-ccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEe
Q 002435          729 NFLTGVILSS-NRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFN  807 (922)
Q Consensus       729 ~~l~~L~Ls~-N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~  807 (922)
                      ..|+.|+|++ |+|++..|..|++|++|+.|+|++|+|++.+|..|++|++|+.|||++|+|++..|..+..++ |+.|+
T Consensus        31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~  109 (347)
T 2ifg_A           31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELV  109 (347)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred             CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence            3477777775 777777667777777777777777777777777777777777777777777766666666655 77777


Q ss_pred             ccCCccccC
Q 002435          808 VSNNNLTGP  816 (922)
Q Consensus       808 ls~N~lsg~  816 (922)
                      +++|++...
T Consensus       110 l~~N~~~c~  118 (347)
T 2ifg_A          110 LSGNPLHCS  118 (347)
T ss_dssp             CCSSCCCCC
T ss_pred             eeCCCccCC
Confidence            777777654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.16  E-value=3e-09  Score=118.46  Aligned_cols=131  Identities=12%  Similarity=0.150  Sum_probs=87.0

Q ss_pred             hhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCC
Q 002435          525 ICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSS  604 (922)
Q Consensus       525 ~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  604 (922)
                      .+..+..|+.+.+.++..+ .....|.++. .|+.+.+. +.++.+...+|.++.+|+.+++..+ ++.+...+|.+|++
T Consensus       260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~-~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCP-ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCE-ECTTTTTTCT-TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             eeeecccccEEecccccce-ecCccccccc-ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence            3344777888887665433 4455677766 68888886 4565566678888889999988764 66666778889999


Q ss_pred             CcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcC
Q 002435          605 LKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRF  665 (922)
Q Consensus       605 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l  665 (922)
                      |+.+.+..+ ++.+...+|.+|++|+.+++.++.....     .+.....|+.+.+..|.+
T Consensus       336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~-----~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQWN-----AISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHH-----TCBCCCCC----------
T ss_pred             CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeehh-----hhhccCCCCEEEeCCCCE
Confidence            999998654 6667778888999999999888765432     224456777777766644

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.14  E-value=1.8e-12  Score=142.55  Aligned_cols=136  Identities=21%  Similarity=0.186  Sum_probs=64.1

Q ss_pred             CCCCEEeccCccCCccCcccc-CCCCCCCEEeCcCCCCCCCccccc-----CCCCCCcEEEcccCCCCC----Cchhhhh
Q 002435          215 SSLTLLSLSGCELRGRIPSLL-GNLTKLMYLDLSFNNLLGELPTSI-----GNLDCLKRLDISWNELSG----ELPASIG  284 (922)
Q Consensus       215 ~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~----~~~~~l~  284 (922)
                      ++|++|+|++|.+.......+ ..+++|++|+|++|.+++.....+     ...++|++|+|++|.++.    .++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            345555555554443221111 123345555555555543322222     234556666666665543    1333345


Q ss_pred             CCCCCCEEEccCCCCCCCC----cccccCCCCCcEEEeeccCCCCc----ccccccCCCCCceEecCCCccCcc
Q 002435          285 NLASLEQLELSLNRFRGKT----PHSMGNFTRLYWLSLASNDFSGE----LPASFGNLRSLEGLDISECKFSSQ  350 (922)
Q Consensus       285 ~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~  350 (922)
                      .+++|++|+|++|.+++..    ...+...++|+.|+|++|.+++.    ++..+...++|++|+|++|.+++.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            5566666666666554321    22334444555555555555431    222333445566666666665543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.08  E-value=6.4e-09  Score=115.85  Aligned_cols=107  Identities=13%  Similarity=0.220  Sum_probs=69.9

Q ss_pred             hhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCC
Q 002435          526 CNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSL  605 (922)
Q Consensus       526 ~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  605 (922)
                      +..++.|+.+.+. +.++.....+|.++. +|+.+++..+ ++.+-..+|.++.+|+.+.+..+ ++.+...+|.+|++|
T Consensus       284 F~~c~~L~~i~l~-~~i~~I~~~aF~~c~-~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L  359 (394)
T 4gt6_A          284 FMNCPALQDIEFS-SRITELPESVFAGCI-SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTAL  359 (394)
T ss_dssp             TTTCTTCCEEECC-TTCCEECTTTTTTCT-TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred             cccccccccccCC-CcccccCceeecCCC-CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCC
Confidence            3336677777775 345545556777776 6888888754 55556678888899999988654 666667789999999


Q ss_pred             cEEECCCCcCccCcchhhcCCCCCCEEEcCCCcc
Q 002435          606 KFLDLGNNQISGTFPSWLGTLRELNVLILKSNKL  639 (922)
Q Consensus       606 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l  639 (922)
                      +.+++.++....   ..+..+.+|+.+.+..|.+
T Consensus       360 ~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          360 NNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             CEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            999998876542   4567788888888776654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.77  E-value=5.8e-09  Score=113.50  Aligned_cols=163  Identities=15%  Similarity=0.159  Sum_probs=76.5

Q ss_pred             ChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccC--CCCCCCEEeCcC--CCCCCC---
Q 002435          182 NLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLG--NLTKLMYLDLSF--NNLLGE---  254 (922)
Q Consensus       182 ~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~Ls~--n~l~~~---  254 (922)
                      .+...+..+++|++|.++++.-. .++. +. +++|++|++..|.+.......+.  .+++|++|+|+.  |...+.   
T Consensus       163 ~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~  239 (362)
T 2ra8_A          163 DLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM  239 (362)
T ss_dssp             BCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred             CHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence            35556666667777776655211 1222 22 56677777766665533333332  566666666642  111111   


Q ss_pred             --ccccc--CCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCc----
Q 002435          255 --LPTSI--GNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGE----  326 (922)
Q Consensus       255 --~~~~l--~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~----  326 (922)
                        +...+  ..+++|++|++++|.+.+..+..+..                     ...+++|++|+|+.|.+.+.    
T Consensus       240 ~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~---------------------a~~~~~L~~LdLs~n~L~d~G~~~  298 (362)
T 2ra8_A          240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE---------------------SDILPQLETMDISAGVLTDEGARL  298 (362)
T ss_dssp             GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHH---------------------CSSGGGCSEEECCSSCCBHHHHHH
T ss_pred             HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHh---------------------CccCCCCCEEECCCCCCChHHHHH
Confidence              00111  13455555555555554322222221                     01234555555555554432    


Q ss_pred             ccccccCCCCCceEecCCCccCccCchhhcC-CCCccEEEccCCC
Q 002435          327 LPASFGNLRSLEGLDISECKFSSQIPSSLRN-LAQLKFLEFSHNN  370 (922)
Q Consensus       327 ~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~L~~n~  370 (922)
                      ++..+..+++|+.|+++.|.++......+.. +  ...++++.++
T Consensus       299 L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          299 LLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             HHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            2223344566777777777665433333332 2  2446666665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.73  E-value=1.3e-08  Score=110.81  Aligned_cols=137  Identities=23%  Similarity=0.307  Sum_probs=74.4

Q ss_pred             cccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhh--CCCCCCEEEccC--CCCCCCC-c---
Q 002435          233 SLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIG--NLASLEQLELSL--NRFRGKT-P---  304 (922)
Q Consensus       233 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~--n~l~~~~-~---  304 (922)
                      ..+..+++|+.|+|++|.-. .++. +. +++|++|++..+.+.......+.  .+++|++|+|+.  +...+.. .   
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l  242 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF  242 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred             HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence            33445566666666555211 1222 22 66777777777776544333443  677788877753  1111110 0   


Q ss_pred             -ccc--cCCCCCcEEEeeccCCCCccccccc---CCCCCceEecCCCccCcc----CchhhcCCCCccEEEccCCCCc
Q 002435          305 -HSM--GNFTRLYWLSLASNDFSGELPASFG---NLRSLEGLDISECKFSSQ----IPSSLRNLAQLKFLEFSHNNFS  372 (922)
Q Consensus       305 -~~l--~~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~  372 (922)
                       ..+  ..+++|+.|+|.+|.+.+..+..+.   .+++|++|+|+.|.+.+.    ++..+..+++|+.|++++|.++
T Consensus       243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence             112  2456777777777776543322222   356777777777776653    2223344567777777777654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.72  E-value=6e-07  Score=99.27  Aligned_cols=104  Identities=13%  Similarity=0.163  Sum_probs=59.4

Q ss_pred             CCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEE
Q 002435          529 SNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFL  608 (922)
Q Consensus       529 ~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  608 (922)
                      +..|+.+.+..+ ++.....+|.++. +|+.+.+..+ ++......|.++.+|+.+.+.++.++.+...+|.+|.+|+.+
T Consensus       239 ~~~L~~i~lp~~-v~~I~~~aF~~~~-~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i  315 (379)
T 4h09_A          239 MKALDEIAIPKN-VTSIGSFLLQNCT-ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV  315 (379)
T ss_dssp             CSSCCEEEECTT-CCEECTTTTTTCT-TCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred             CccceEEEcCCC-ccEeCccccceee-hhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence            555666665543 3333344555554 4666666433 433444556666666666666666665556666666666666


Q ss_pred             ECCCCcCccCcchhhcCCCCCCEEEcCC
Q 002435          609 DLGNNQISGTFPSWLGTLRELNVLILKS  636 (922)
Q Consensus       609 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  636 (922)
                      +|..+ ++.+...+|.+|.+|+.+.+..
T Consensus       316 ~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          316 TLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             EcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            66543 5544555666666666665543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.70  E-value=7.4e-07  Score=98.55  Aligned_cols=100  Identities=13%  Similarity=0.144  Sum_probs=71.4

Q ss_pred             hhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCC
Q 002435          525 ICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSS  604 (922)
Q Consensus       525 ~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  604 (922)
                      .+..+.+|+.+.+..+ ++......|.++. +|+.+.+.++.++.+-..+|.++.+|+.++|..+ ++.+...+|.+|++
T Consensus       258 aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~-~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~  334 (379)
T 4h09_A          258 LLQNCTALKTLNFYAK-VKTVPYLLCSGCS-NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKA  334 (379)
T ss_dssp             TTTTCTTCCEEEECCC-CSEECTTTTTTCT-TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             ccceeehhcccccccc-ceecccccccccc-ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCC
Confidence            3333667777777543 4444455677766 6888888888887677778888889999988754 66666778999999


Q ss_pred             CcEEECCCCcCccCcchhhcCCCC
Q 002435          605 LKFLDLGNNQISGTFPSWLGTLRE  628 (922)
Q Consensus       605 L~~L~Ls~N~l~~~~p~~~~~l~~  628 (922)
                      |+.+.+..+ ++.+-..+|.++..
T Consensus       335 L~~i~ip~~-v~~I~~~aF~~c~~  357 (379)
T 4h09_A          335 LSTISYPKS-ITLIESGAFEGSSI  357 (379)
T ss_dssp             CCCCCCCTT-CCEECTTTTTTSSC
T ss_pred             CCEEEECCc-cCEEchhHhhCCCC
Confidence            999888655 66555666766543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.54  E-value=1.4e-09  Score=111.93  Aligned_cols=22  Identities=0%  Similarity=-0.259  Sum_probs=15.2

Q ss_pred             CCccccceEecCCCCcEEEEEC
Q 002435           71 DCCLWDGVECNENTGHVIKLDL   92 (922)
Q Consensus        71 ~~c~w~gv~c~~~~~~v~~L~L   92 (922)
                      ..|.|.|+.|++...+|..+-.
T Consensus        76 ~l~~~~g~i~~~~~~ki~~~v~   97 (267)
T 3rw6_A           76 ALKAVNYKILDRENRRISIIIN   97 (267)
T ss_dssp             HHHHTTSSCBCTTSCBCCCEEE
T ss_pred             HHHhcCcEEECCCCCEEEEEEe
Confidence            4689999999865445544433

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.36  E-value=1.5e-07  Score=92.31  Aligned_cols=41  Identities=10%  Similarity=0.003  Sum_probs=19.6

Q ss_pred             ccCCCCCCEEECCCC-CCCCc----CchhhcCCCCCCEEEcCCCCC
Q 002435          132 IINLSRLSYLNLSSA-GFFGQ----IPSEILELSNLVSLDLSHNSY  172 (922)
Q Consensus       132 l~~l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~Ls~n~~  172 (922)
                      +...++|++|+|++| .+...    +...+...++|++|+|++|.+
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i   77 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRS   77 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCC
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCC
Confidence            344455555555555 44321    223334445555555555553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.34  E-value=1.3e-07  Score=97.40  Aligned_cols=83  Identities=24%  Similarity=0.306  Sum_probs=57.5

Q ss_pred             EEecccc---ccccCcccccccCCCCEEeCCCccccc--cCCccccCCCCCCEEeCCCCcCcccCcccccCCC--CCCeE
Q 002435          734 VILSSNR---FDGEIPTSIANLKGLQVLSLANNSLHG--HILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLT--FLEFF  806 (922)
Q Consensus       734 L~Ls~N~---l~g~ip~~~~~l~~L~~L~Ls~N~l~~--~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~--~L~~L  806 (922)
                      ++++.|.   +.+.++....++++|++|+||+|+|++  .+|..++.+++|+.|+|++|+|++.  ..+..+.  .|++|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            4566663   333333333567788888888888887  4566777888888888888888875  3344444  78888


Q ss_pred             eccCCccccCCC
Q 002435          807 NVSNNNLTGPIP  818 (922)
Q Consensus       807 ~ls~N~lsg~iP  818 (922)
                      ++++|++++.+|
T Consensus       226 ~L~~Npl~~~~~  237 (267)
T 3rw6_A          226 WLDGNSLCDTFR  237 (267)
T ss_dssp             ECTTSTTGGGCS
T ss_pred             EccCCcCccccC
Confidence            888888887776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.34  E-value=2e-07  Score=91.41  Aligned_cols=63  Identities=16%  Similarity=0.181  Sum_probs=28.5

Q ss_pred             CCCCCCEEeCcCCCCCCC----cccccCCCCCCcEEEc--ccCCCCCC----chhhhhCCCCCCEEEccCCCC
Q 002435          237 NLTKLMYLDLSFNNLLGE----LPTSIGNLDCLKRLDI--SWNELSGE----LPASIGNLASLEQLELSLNRF  299 (922)
Q Consensus       237 ~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L--~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l  299 (922)
                      ..+.|++|+|++|.+.+.    +...+...+.|++|+|  ++|.++..    +...+...++|++|+|++|.+
T Consensus        91 ~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A           91 VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             hCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            334455555555544432    2233444445555555  44555432    223333445555555555543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.79  E-value=6.8e-06  Score=78.18  Aligned_cols=85  Identities=13%  Similarity=0.180  Sum_probs=42.1

Q ss_pred             CCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcC----CCCCEEEcCCCc-CCCCCchh
Q 002435          136 SRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKL----TNLKELALGGVT-ISSPIPHS  210 (922)
Q Consensus       136 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l----~~L~~L~L~~n~-~~~~~~~~  210 (922)
                      .+|++||+++|.++..--..+..|++|++|+|++|..     +++..+. .+..+    ++|++|++++|. ++...-..
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~-----ItD~gL~-~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~  134 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHY-----IEDGCLE-RLSQLENLQKSMLEMEIISCGNVTDKGIIA  134 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTT-----CCHHHHH-HHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCc-----cCHHHHH-HHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence            3566666666666555445556666666666666631     1111111 12221    245555555543 44433444


Q ss_pred             ccCCCCCCEEeccCcc
Q 002435          211 LANLSSLTLLSLSGCE  226 (922)
Q Consensus       211 l~~l~~L~~L~Ls~n~  226 (922)
                      +..+++|++|++++|.
T Consensus       135 L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          135 LHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             GGGCTTCCEEEEESCT
T ss_pred             HhcCCCCCEEECCCCC
Confidence            4555555555555553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.76  E-value=1.3e-05  Score=76.28  Aligned_cols=82  Identities=13%  Similarity=0.176  Sum_probs=37.7

Q ss_pred             CCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCC-CCCCchhhhhCC----CCCCEEEccCCC-CCCCCcccccCCCCC
Q 002435          240 KLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNE-LSGELPASIGNL----ASLEQLELSLNR-FRGKTPHSMGNFTRL  313 (922)
Q Consensus       240 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~L  313 (922)
                      +|++||++++.++..--..+.++++|++|+|++|. +++.--..+..+    ++|++|+|++|. ++...-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            45555555555544433444555555555555553 443322333332    245555555542 433323333444444


Q ss_pred             cEEEeecc
Q 002435          314 YWLSLASN  321 (922)
Q Consensus       314 ~~L~L~~n  321 (922)
                      ++|++++|
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            44444444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.98  E-value=0.00063  Score=65.91  Aligned_cols=87  Identities=18%  Similarity=0.183  Sum_probs=37.9

Q ss_pred             ccCCCCCCEEeccCccCCcc----CccccCCCCCCCEEeCcCCCCCCC----cccccCCCCCCcEEEcccC---CCCC--
Q 002435          211 LANLSSLTLLSLSGCELRGR----IPSLLGNLTKLMYLDLSFNNLLGE----LPTSIGNLDCLKRLDISWN---ELSG--  277 (922)
Q Consensus       211 l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n---~l~~--  277 (922)
                      +..-+.|++|+|++|++...    +.+.+..-+.|++|+|+.|.|.+.    +.+++..-+.|++|+|++|   .+..  
T Consensus        66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g  145 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  145 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence            33334455555555544422    222233344555555555555432    2223344444555555543   2221  


Q ss_pred             --CchhhhhCCCCCCEEEccCC
Q 002435          278 --ELPASIGNLASLEQLELSLN  297 (922)
Q Consensus       278 --~~~~~l~~l~~L~~L~L~~n  297 (922)
                        .+...+..-+.|+.|+++.|
T Consensus       146 ~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          146 EMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHHhCCCcCeEeccCC
Confidence              12333444455555555544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.94  E-value=0.00085  Score=65.01  Aligned_cols=88  Identities=10%  Similarity=0.116  Sum_probs=43.8

Q ss_pred             CCCCCCEEECCCC-CCCCc----CchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCc
Q 002435          134 NLSRLSYLNLSSA-GFFGQ----IPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIP  208 (922)
Q Consensus       134 ~l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~  208 (922)
                      +-+.|++|+|+++ .+...    +...+..-+.|++|+|++|++.+.-   ...+...+..-+.|++|+|+.|.|.....
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~g---a~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSE---ARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHH---HTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHH---HHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            3455666666653 44221    2334444556666666666653221   24445555555666666666666554322


Q ss_pred             ----hhccCCCCCCEEeccC
Q 002435          209 ----HSLANLSSLTLLSLSG  224 (922)
Q Consensus       209 ----~~l~~l~~L~~L~Ls~  224 (922)
                          +++..-+.|++|+|++
T Consensus       116 ~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCC
T ss_pred             HHHHHHHhhCCceeEEECCC
Confidence                2233334455555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.84  E-value=0.0016  Score=58.95  Aligned_cols=36  Identities=22%  Similarity=0.216  Sum_probs=18.4

Q ss_pred             CCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcc
Q 002435          778 GLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNL  813 (922)
Q Consensus       778 ~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~l  813 (922)
                      +|+.|||++|+|+...+..|..+++|+.|+|++|++
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            345555555555544444455555555555555544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.64  E-value=0.0022  Score=57.96  Aligned_cols=57  Identities=23%  Similarity=0.248  Sum_probs=48.6

Q ss_pred             eEEEecccccc-ccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCc
Q 002435          732 TGVILSSNRFD-GEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFS  790 (922)
Q Consensus       732 ~~L~Ls~N~l~-g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~  790 (922)
                      ..+|.++++++ ..+|..+.  .+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36889999997 46776543  46899999999999988889999999999999999875

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=81.93  E-value=0.91  Score=31.35  Aligned_cols=9  Identities=22%  Similarity=0.541  Sum_probs=3.7

Q ss_pred             hhhHHHHHH
Q 002435          880 AGGLIVGVV  888 (922)
Q Consensus       880 ~~~~~~~~~  888 (922)
                      +.|++.|++
T Consensus        14 A~gVVgGv~   22 (44)
T 2ks1_B           14 ATGMVGALL   22 (44)
T ss_dssp             THHHHHHHH
T ss_pred             EeehhHHHH
Confidence            334444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	922
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-23
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-12
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.003
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.004
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-08
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	9e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	5e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	6e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.002
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.004
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score =  100 bits (249), Expect = 1e-23
 Identities = 84/351 (23%), Positives = 135/351 (38%), Gaps = 53/351 (15%)

Query: 25  LCHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCC--LWDGVECNE 82
           LC+  ++ ALLQ K+ L            +P     +SW P     DCC   W GV C+ 
Sbjct: 2   LCNPQDKQALLQIKKDLG-----------NP--TTLSSWLP---TTDCCNRTWLGVLCDT 45

Query: 83  NTG--HVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSY 140
           +T    V  LDLS   L       S L  L +L +L +     +   IPP I  L++L Y
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 141 LNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGG 200
           L ++     G IP  + ++  LV+LD S+N+                             
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-------------------------- 139

Query: 201 VTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIG 260
                 +P S+++L +L  ++  G  + G IP   G+ +KL        N L        
Sbjct: 140 -----TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194

Query: 261 NLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLAS 320
               L  +D+S N L G+     G+  + +++ L+ N           +        L +
Sbjct: 195 ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLD-LRN 253

Query: 321 NDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNF 371
           N   G LP     L+ L  L++S      +IP    NL +     +++N  
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 86.0 bits (211), Expect = 1e-18
 Identities = 69/297 (23%), Positives = 101/297 (34%), Gaps = 34/297 (11%)

Query: 551 DNFSDHLSILDLQHNKFCG--SIPQTFLSGRSLMMIDLSDNL-LQGRIPRSLVNCSSLKF 607
           D  +  ++ LDL          IP +  +   L  + +     L G IP ++   + L +
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 608 LDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTG 667
           L + +  +SG  P +L  ++ L  L    N L G +  P +    P L  I    NR +G
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL--PPSISSLPNLVGITFDGNRISG 163

Query: 668 KLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKV 727
            +P  Y                                           N+         
Sbjct: 164 AIPDSYGSFSKLFT-----------------------------SMTISRNRLTGKIPPTF 194

Query: 728 PNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNN 787
            N     +  S        + +              +     L  +G    L  LDL NN
Sbjct: 195 ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN 254

Query: 788 KFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLCGKPLPK 844
           +  G +PQ L  L FL   NVS NNL G IPQG     FD +++  N  LCG PLP 
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 67.5 bits (163), Expect = 1e-12
 Identities = 43/301 (14%), Positives = 86/301 (28%), Gaps = 36/301 (11%)

Query: 353 SSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFN 412
            +     ++  L+ S  N   P  +   L N  +L  L +                    
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN---------------- 87

Query: 413 FVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIG 472
                   +   P  +     L  L ++   + G +P +L +         + +      
Sbjct: 88  ------NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS--- 138

Query: 473 FYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSL 532
               P       +   +    N + G +P           S      ++   I  +  +L
Sbjct: 139 -GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197

Query: 533 EILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQ 592
            +  +  +         +   SD  +                    ++L  +DL +N + 
Sbjct: 198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY 257

Query: 593 GRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGF 652
           G +P+ L     L  L++  N + G  P   G L+  +V    +NK           CG 
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCL---------CGS 307

Query: 653 P 653
           P
Sbjct: 308 P 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 54.8 bits (130), Expect = 2e-08
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 242 MYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRG 301
             LDL  N + G LP  +  L  L  L++S+N L GE+P   GNL   +    + N+   
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLC 305

Query: 302 KTP 304
            +P
Sbjct: 306 GSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 51.7 bits (122), Expect = 2e-07
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 222 LSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELP 280
           L    + G +P  L  L  L  L++SFNNL GE+P   GNL        + N+     P
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.9 bits (206), Expect = 4e-18
 Identities = 53/260 (20%), Positives = 89/260 (34%), Gaps = 10/260 (3%)

Query: 215 SSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNE 274
               LL L   ++         NL  L  L L  N +    P +   L  L+RL +S N+
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 275 LSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNL 334
           L          L  L   E  + + R    + +     +  L       SG    +F  +
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQGM 149

Query: 335 RSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSS 394
           + L  + I++   ++ IP  L     L  L    N  +        L    +L  L LS 
Sbjct: 150 KKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVD--AASLKGLNNLAKLGLSF 204

Query: 395 NRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIE 454
           N +S         +     + L +  L + P  L +  Y++V+ L  N I          
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 455 PS----MQNFSYLNLSHNFL 470
           P       ++S ++L  N +
Sbjct: 265 PGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.8 bits (190), Expect = 5e-16
 Identities = 63/316 (19%), Positives = 111/316 (35%), Gaps = 37/316 (11%)

Query: 151 QIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHS 210
           ++P ++    +   LDL +N    + E+K+ +  NL     NL  L L    IS   P +
Sbjct: 24  KVPKDLP--PDTALLDLQNN---KITEIKDGDFKNL----KNLHTLILINNKISKISPGA 74

Query: 211 LANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDI 270
            A L  L  L LS  +L+     +   L +L   +     +   +   + N   +  L  
Sbjct: 75  FAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL-NQMIVVELGT 133

Query: 271 SWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPAS 330
           +  + SG    +   +  L  + ++       T    G    L  L L  N  +    AS
Sbjct: 134 NPLKSSGIENGAFQGMKKLSYIRIADTNI---TTIPQGLPPSLTELHLDGNKITKVDAAS 190

Query: 331 FGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHL 390
              L +L  L +S    S+    SL N   L+ L  ++N           L + K+++ +
Sbjct: 191 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP---GGLADHKYIQVV 247

Query: 391 SLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPK 450
            L +N +S      F                   P +   +     + L  N +      
Sbjct: 248 YLHNNNISAIGSNDFCP-----------------PGYNTKKASYSGVSLFSNPVQ----Y 286

Query: 451 WLIEPSMQNFSYLNLS 466
           W I+PS     Y+  +
Sbjct: 287 WEIQPSTFRCVYVRAA 302

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.9 bits (180), Expect = 1e-14
 Identities = 56/278 (20%), Positives = 91/278 (32%), Gaps = 24/278 (8%)

Query: 112 HLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNS 171
               LDL  N  I      +  NL  L  L L +       P     L  L  L LS N 
Sbjct: 32  DTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 172 YYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELR--G 229
              L E          K    L+EL +    I+         L+ + ++ L    L+  G
Sbjct: 91  LKELPE----------KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 140

Query: 230 RIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASL 289
                   + KL Y+ ++  N+        G    L  L +  N+++    AS+  L +L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 290 EQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSS 349
            +L LS N        S+ N   L  L   +N+   ++P    + + ++ + +     S+
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELH-LNNNKLVKVPGGLADHKYIQVVYLHNNNISA 256

Query: 350 ------QIPSSLRNLAQLKFLEFSHNNFS-GPIDLDMF 380
                   P      A    +    N      I    F
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 294

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.4 bits (158), Expect = 5e-12
 Identities = 62/297 (20%), Positives = 103/297 (34%), Gaps = 15/297 (5%)

Query: 547 PQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLK 606
           P C      HL ++          +P+         ++DL +N +         N  +L 
Sbjct: 2   PVCPFRCQCHLRVVQCSDLGL-EKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLH 58

Query: 607 FLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFT 666
            L L NN+IS   P     L +L  L L  N+L  +  +          + + +  N  T
Sbjct: 59  TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL-----QELRVHENEIT 113

Query: 667 GKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDK 726
             +    F   N M VV           I   A      L        +++         
Sbjct: 114 K-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR----IADTNITTIPQG 168

Query: 727 VPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSN 786
           +P  LT + L  N+       S+  L  L  L L+ NS+       L N   L  L L+N
Sbjct: 169 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 228

Query: 787 NKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFN-GNLGLCGKPL 842
           NK   ++P  L D  +++   + NNN++         P ++    +   + L   P+
Sbjct: 229 NKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.0 bits (149), Expect = 7e-11
 Identities = 43/322 (13%), Positives = 85/322 (26%), Gaps = 52/322 (16%)

Query: 311 TRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNN 370
                L L +N  +      F NL++L  L +   K S   P +   L +L+ L  S N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 371 FSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKN 430
                +        + L        ++        N             +        + 
Sbjct: 91  LKELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 431 QHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLD 490
              L  + ++   I       + +    + + L+L  N +              +   L 
Sbjct: 149 MKKLSYIRIADTNI-----TTIPQGLPPSLTELHLDGNKITKV--DAASLKGLNNLAKLG 201

Query: 491 LSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCL 550
           LS+N +                               ++  L  L L+ N L  +     
Sbjct: 202 LSFNSISAV----------------------DNGSLANTPHLRELHLNNNKLVKVPGGLA 239

Query: 551 DNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDL 610
           D+   ++ ++ L +N         F                    P      +S   + L
Sbjct: 240 DHK--YIQVVYLHNNNISAIGSNDFCP------------------PGYNTKKASYSGVSL 279

Query: 611 GNNQISGTFPSWLGTLRELNVL 632
            +N +   +     T R + V 
Sbjct: 280 FSNPVQ-YWEIQPSTFRCVYVR 300

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.2 bits (147), Expect = 1e-10
 Identities = 45/293 (15%), Positives = 85/293 (29%), Gaps = 43/293 (14%)

Query: 504 PPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQ 563
           PP T    + NN +T        N  N L  L L  N +S + P         L  L L 
Sbjct: 30  PPDTALLDLQNNKITEIKDGDFKNLKN-LHTLILINNKISKISPGAFAPLV-KLERLYLS 87

Query: 564 HNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWL 623
            N+      +   + + L + +     ++  +   L     +  L     + SG      
Sbjct: 88  KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAF 146

Query: 624 GTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVV 683
             +++L+ + +    +  +          P L  + L  N+ T    +      N     
Sbjct: 147 QGMKKLSYIRIADTNITTI-----PQGLPPSLTELHLDGNKITKVDAASLKGLNN----- 196

Query: 684 NTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDG 743
                                 L     S    +     S    P+     +  +N    
Sbjct: 197 ----------------------LAKLGLSFNSISAVDNGSLANTPHLRELHL--NNNKLV 232

Query: 744 EIPTSIANLKGLQVLSLANNSLHG------HILSCLGNLTGLESLDLSNNKFS 790
           ++P  +A+ K +QV+ L NN++                      + L +N   
Sbjct: 233 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 82.7 bits (203), Expect = 3e-17
 Identities = 62/455 (13%), Positives = 123/455 (27%), Gaps = 91/455 (20%)

Query: 357 NLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGL 416
            LA+         N +  +       +   +  L      +                   
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT----DLDQVTTLQADRLGIKSID--------------- 60

Query: 417 RSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQH 476
               +    N       L  ++ S N++            ++N + L             
Sbjct: 61  ---GVEYLNN-------LTQINFSNNQLTD-------ITPLKNLTKLVDILMNNNQIADI 103

Query: 477 PMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILD 536
                          +                   +S+N+++         S        
Sbjct: 104 TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ------ 157

Query: 537 LSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIP 596
                  G     L   ++  ++  L  +    S         +L  +  ++N +    P
Sbjct: 158 ---QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 214

Query: 597 RSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELR 656
                 ++L  L L  NQ+       L +L  L  L L +N++  +        G  +L 
Sbjct: 215 L--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPL----SGLTKLT 266

Query: 657 IIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMS 716
            + L  N+ +   P         ++                                   
Sbjct: 267 ELKLGANQISNISPLAGLTALTNLE--------------------------------LNE 294

Query: 717 NKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNL 776
           N+ + +S       LT + L  N      P  +++L  LQ L  ANN +    +S L NL
Sbjct: 295 NQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANL 350

Query: 777 TGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNN 811
           T +  L   +N+ S   P  L +LT +    +++ 
Sbjct: 351 TNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.4 bits (197), Expect = 2e-16
 Identities = 68/402 (16%), Positives = 132/402 (32%), Gaps = 39/402 (9%)

Query: 237 NLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSL 296
            L + M   L   N+   +  +  +LD +  L      +       +  L +L Q+  S 
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 75

Query: 297 NRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLR 356
           N+    TP  + N T+L  + + +N  +   P +     +   L  ++      +     
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK---- 129

Query: 357 NLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGL 416
                     ++ N        +  ++           +  +  T      +        
Sbjct: 130 --------NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 181

Query: 417 RSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQH 476
            S N     + L     LE L  + N+I    P  +    + N   L+L+ N L      
Sbjct: 182 ISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI----LTNLDELSLNGNQLKD---- 233

Query: 477 PMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYL-VSNNSLTGKIPFWICNSSNSLEIL 535
                   +   LDL+ N +    P+        L +  N ++   P     +  +LE+ 
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELN 293

Query: 536 DLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRI 595
           +    +          +   +L+ L L  N      P + L+   L  +  ++N +    
Sbjct: 294 ENQLED------ISPISNLKNLTYLTLYFNNISDISPVSSLT--KLQRLFFANNKVSD-- 343

Query: 596 PRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSN 637
             SL N +++ +L  G+NQIS   P  L  L  +  L L   
Sbjct: 344 VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 73.9 bits (180), Expect = 2e-14
 Identities = 65/392 (16%), Positives = 124/392 (31%), Gaps = 41/392 (10%)

Query: 188 KKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLS 247
             L    +  LG   ++  +  S  +L  +T L      ++      +  L  L  ++ S
Sbjct: 19  TALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFS 74

Query: 248 FNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSM 307
            N L    P  + NL  L  + ++ N+++   P +     +   L  +         +  
Sbjct: 75  NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 308 GNFT------RLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLR----- 356
                      +  +S  S   S +  +    +  L+ L          I S+       
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192

Query: 357 --NLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFV 414
              L  L+ L  ++N  S    L +      +L+ LSL+ N+L         +      +
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGI----LTNLDELSLNGNQLKDI--GTLASLTNLTDL 246

Query: 415 GLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFY 474
            L +  ++           L  L L  N+I    P   +          N          
Sbjct: 247 DLANNQISNLAPL-SGLTKLTELKLGANQISNISPLAGLTALTNLELNEN--------QL 297

Query: 475 QHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYL-VSNNSLTGKIPFWICNSSNSLE 533
           +         +   L L +N +    PV        L  +NN ++      + N +N + 
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD--VSSLANLTN-IN 354

Query: 534 ILDLSYNNLSGLLPQCLDNFSDHLSILDLQHN 565
            L   +N +S L P  L N +  ++ L L   
Sbjct: 355 WLSAGHNQISDLTP--LANLT-RITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 73.5 bits (179), Expect = 3e-14
 Identities = 78/361 (21%), Positives = 130/361 (36%), Gaps = 71/361 (19%)

Query: 85  GHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLS 144
             V  L          I S  G+  L +L  ++ + N    ++I P + NL++L  + ++
Sbjct: 44  DQVTTLQADRLG----IKSIDGVEYLNNLTQINFSNNQL--TDITP-LKNLTKLVDILMN 96

Query: 145 SAGFFGQIPSEILEL-----------------------------SNLVSLDLSHNSYYNL 175
           +       P   L                               SN +S   + +   +L
Sbjct: 97  NNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 156

Query: 176 IELKEPNLGNLVKKLTNLKELALGGVTIS-SPIPHSLANLSSLTLLSLSGCELRGRIPSL 234
            +L   N    +K L NL  L    ++ +       LA L++L  L  +  ++    P  
Sbjct: 157 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL- 215

Query: 235 LGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLEL 294
            G LT L  L L+ N L      ++ +L  L  LD++ N++S   P  +  L  L +L+L
Sbjct: 216 -GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL 270

Query: 295 SLNRFRGKTP--------------------HSMGNFTRLYWLSLASNDFSGELPASFGNL 334
             N+    +P                      + N   L +L+L  N+ S   P    +L
Sbjct: 271 GANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSL 328

Query: 335 RSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSS 394
             L+ L  +  K S    SSL NL  + +L   HN  S        L N   +  L L+ 
Sbjct: 329 TKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP----LANLTRITQLGLND 382

Query: 395 N 395
            
Sbjct: 383 Q 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 71.6 bits (174), Expect = 1e-13
 Identities = 48/248 (19%), Positives = 87/248 (35%), Gaps = 26/248 (10%)

Query: 50  YYIWDPCHPKTASWKPEEANIDCCLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFK 109
                   P       E  +I       +       ++  L  +N+ +            
Sbjct: 162 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL----GI 217

Query: 110 LVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSH 169
           L +L+ L L  N     +    + +L+ L+ L+L++       P  +  L+ L  L L  
Sbjct: 218 LTNLDELSLNGNQL---KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 272

Query: 170 NSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRG 229
           N   N+  L        ++   N                  ++NL +LT L+L    +  
Sbjct: 273 NQISNISPLAGLTALTNLELNEN-----------QLEDISPISNLKNLTYLTLYFNNISD 321

Query: 230 RIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASL 289
             P  + +LTKL  L  + N +     +S+ NL  +  L    N++S   P  + NL  +
Sbjct: 322 ISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRI 375

Query: 290 EQLELSLN 297
            QL L+  
Sbjct: 376 TQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.6 bits (148), Expect = 2e-10
 Identities = 66/393 (16%), Positives = 140/393 (35%), Gaps = 34/393 (8%)

Query: 82  ENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYL 141
                 +K  L  + +   ++ +     L  +  L          +    +  L+ L+ +
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQT----DLDQVTTLQADRLGIKSID---GVEYLNNLTQI 71

Query: 142 NLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGV 201
           N S+       P  +  L+ LV + +++N   ++  L        +    N         
Sbjct: 72  NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 129

Query: 202 TISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNL------LGEL 255
            +++     L++ +   + +LSG     ++             +L+              
Sbjct: 130 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 189

Query: 256 PTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYW 315
            + +  L  L+ L  + N++S   P  I    +L++L L+ N+ +     ++ + T L  
Sbjct: 190 ISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTD 245

Query: 316 LSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPI 375
           L LA+N  S   P     L  L  L +   + S+  P  L  L  L  LE + N      
Sbjct: 246 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI- 300

Query: 376 DLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLE 435
                + N K+L +L+L  N +S  +    ++  K   +   +  +++  + L N   + 
Sbjct: 301 ---SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVSS-LANLTNIN 354

Query: 436 VLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHN 468
            L    N+I    P      ++   + L L+  
Sbjct: 355 WLSAGHNQISDLTPLA----NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.0 bits (131), Expect = 2e-08
 Identities = 63/369 (17%), Positives = 124/369 (33%), Gaps = 41/369 (11%)

Query: 134 NLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNL 193
           +L +++ L     G   +    +  L+NL  ++ S+N   ++  L         K LT L
Sbjct: 42  DLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITPL---------KNLTKL 90

Query: 194 KELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLG 253
            ++      +++     +  L++LT L+                    +      +N + 
Sbjct: 91  VDI-----LMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTIS 145

Query: 254 ELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRL 313
           ++    G     +    +       L     NL +LE+L++S N+        +   T L
Sbjct: 146 DISALSGLTSLQQLSFGNQVTDLKPL----ANLTTLERLDISSNKVS--DISVLAKLTNL 199

Query: 314 YWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSG 373
             L   +N  S   P       +L+ L ++  +       +L +L  L  L+ ++N  S 
Sbjct: 200 ESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 255

Query: 374 PIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHY 433
              L         L  L L +N++S  +     T+         + N  E  + + N   
Sbjct: 256 LAPLS----GLTKLTELKLGANQISNISPLAGLTALTNLE---LNENQLEDISPISNLKN 308

Query: 434 LEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSY 493
           L  L L  N I    P      S+     L  ++N +              +   L   +
Sbjct: 309 LTYLTLYFNNISDISPVS----SLTKLQRLFFANNKVSD----VSSLANLTNINWLSAGH 360

Query: 494 NYLQGPLPV 502
           N +    P+
Sbjct: 361 NQISDLTPL 369

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.2 bits (103), Expect = 6e-05
 Identities = 43/313 (13%), Positives = 99/313 (31%), Gaps = 28/313 (8%)

Query: 530 NSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDN 589
           + +  L      +  +    ++  + +L+ ++  +N+     P   L+    ++++ +  
Sbjct: 44  DQVTTLQADRLGIKSI--DGVEYLN-NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI 100

Query: 590 LLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTG 649
                +           F +   +       + L  L   +  I   + L G+       
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160

Query: 650 CGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIY 709
            G     +  L+N     +L     +  +   +   + L  +       + ++   +   
Sbjct: 161 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN 220

Query: 710 DYSLT-MSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGH 768
              L+   N+ + +        LT + L++N+     P  ++ L  L  L L  N +   
Sbjct: 221 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 278

Query: 769 I--------------------LSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNV 808
                                +S + NL  L  L L  N  S   P  +  LT L+    
Sbjct: 279 SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 336

Query: 809 SNNNLTGPIPQGN 821
           +NN ++      N
Sbjct: 337 ANNKVSDVSSLAN 349

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 48/308 (15%), Positives = 94/308 (30%), Gaps = 51/308 (16%)

Query: 559 ILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGT 618
              L       ++ QT L    +  +      ++      +   ++L  ++  NNQ++  
Sbjct: 26  KTVLGKTNVTDTVSQTDLD--QVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDI 81

Query: 619 FP-SWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCW 677
            P   L  L ++ +   +   +  +    N          I   +        ++     
Sbjct: 82  TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 141

Query: 678 NAMQVVNTSELRYMEGMIYPFALVSY----AALGIYDYSLTMSNKGQMMSYDKVPNFLTG 733
           N +  ++          +     V+     A L   +     SNK   +S       L  
Sbjct: 142 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES 201

Query: 734 VILSSNRFDGEIPT--------------------SIANLKGLQVLSLANNSLHGHILSCL 773
           +I ++N+     P                     ++A+L  L  L LANN +    L+ L
Sbjct: 202 LIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN--LAPL 259

Query: 774 GNLTGLESLDLSNNKFSGQIP--------------------QQLVDLTFLEFFNVSNNNL 813
             LT L  L L  N+ S   P                      + +L  L +  +  NN+
Sbjct: 260 SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 319

Query: 814 TGPIPQGN 821
           +   P  +
Sbjct: 320 SDISPVSS 327

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 0.002
 Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 4/85 (4%)

Query: 728 PNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNN 787
                 +     + +     S  +L  +  L      +    +  +  L  L  ++ SNN
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNN 76

Query: 788 KFSGQIPQQLVDLTFLEFFNVSNNN 812
           + +   P  L +LT L    ++NN 
Sbjct: 77  QLTDITP--LKNLTKLVDILMNNNQ 99

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (163), Expect = 9e-13
 Identities = 58/277 (20%), Positives = 96/277 (34%), Gaps = 27/277 (9%)

Query: 191 TNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNN 250
              + + L G  IS     S     +LT+L L    L     +    L  L  LDLS N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 251 LLGEL-PTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGN 309
            L  + P +   L  L  L +    L    P     LA+L+ L L  N  +     +  +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 310 FTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHN 369
              L  L L  N  S     +F  L SL+ L + + + +   P + R+L +L  L    N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 370 NFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLK 429
           N S      +     + L++L L+ N                       C       +L+
Sbjct: 212 NLSALPTEALA--PLRALQYLRLNDNPWVC------------------DCRARPLWAWLQ 251

Query: 430 NQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLS 466
                     S +++   +P+ L    ++  +  +L 
Sbjct: 252 K------FRGSSSEVPCSLPQRLAGRDLKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (157), Expect = 5e-12
 Identities = 46/262 (17%), Positives = 78/262 (29%), Gaps = 11/262 (4%)

Query: 112 HLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNS 171
             + + L  N    S +P           L +           +    + L  L+    S
Sbjct: 33  ASQRIFLHGNRI--SHVPAAS--FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 172 YYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRI 231
               +   +P        L  L  L L    +    P     L++L  L L    L+   
Sbjct: 89  DNAQLRSVDPAT---FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145

Query: 232 PSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQ 291
                +L  L +L L  N +      +   L  L RL +  N ++   P +  +L  L  
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 292 LELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQI 351
           L L  N        ++     L +L L  N +  +  A       L+    S  +    +
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSL 264

Query: 352 PSSLRNLAQLKFLEFSHNNFSG 373
           P  L           + N+  G
Sbjct: 265 PQRLAGR---DLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 3e-11
 Identities = 40/303 (13%), Positives = 82/303 (27%), Gaps = 38/303 (12%)

Query: 513 SNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIP 572
               L   +P  I     + + + L  N +S +         +   +    +        
Sbjct: 19  PQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA 74

Query: 573 QTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVL 632
                     +    +  L+   P +      L  L L    +    P     L  L  L
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134

Query: 633 ILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYME 692
            L+ N L  +    +T      L  + L  NR +      +    +              
Sbjct: 135 YLQDNALQALP--DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS-------------- 178

Query: 693 GMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANL 752
             +    L       ++ ++     +   +               +N        ++A L
Sbjct: 179 --LDRLLLHQNRVAHVHPHAFRDLGRLMTLYL------------FANNLSALPTEALAPL 224

Query: 753 KGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNN 812
           + LQ L L +N               L+    S+++    +PQ+L          ++ N+
Sbjct: 225 RALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLK---RLAAND 280

Query: 813 LTG 815
           L G
Sbjct: 281 LQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 9e-10
 Identities = 49/249 (19%), Positives = 81/249 (32%), Gaps = 13/249 (5%)

Query: 151 QIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHS 210
            +P  I   +    + L  N   ++            +   NL  L L    ++     +
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPA-------ASFRACRNLTILWLHSNVLARIDAAA 75

Query: 211 LANLSSLTLLSLSGCELRGRI-PSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLD 269
              L+ L  L LS       + P+    L +L  L L    L    P     L  L+ L 
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135

Query: 270 ISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPA 329
           +  N L      +  +L +L  L L  NR       +      L  L L  N  +   P 
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 330 SFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEH 389
           +F +L  L  L +     S+    +L  L  L++L  + N +               L+ 
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW---AWLQK 252

Query: 390 LSLSSNRLS 398
              SS+ + 
Sbjct: 253 FRGSSSEVP 261

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 3e-08
 Identities = 39/258 (15%), Positives = 74/258 (28%), Gaps = 5/258 (1%)

Query: 384 FKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNK 443
               + + L  NR+S    A F   +    + L S  L            L       + 
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 444 IHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVP 503
              +         +     L+L    L                  L  +           
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 504 PPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQ 563
                 +L  + +    +P       +SL+ L L  N ++ + P    +    L  L L 
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL-GRLMTLYLF 209

Query: 564 HNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWL 623
            N       +     R+L  + L+DN       R+    + L+     ++++  + P   
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRGSSSEVPCSLPQR- 267

Query: 624 GTLRELNVLILKSNKLHG 641
             L   ++  L +N L G
Sbjct: 268 --LAGRDLKRLAANDLQG 283

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (166), Expect = 1e-12
 Identities = 65/455 (14%), Positives = 108/455 (23%), Gaps = 20/455 (4%)

Query: 192 NLKELALGGVTIS-SPIPHSLANLSSLTLLSLSGCELRGR----IPSLLGNLTKLMYLDL 246
           +++ L +    +S +     L  L    ++ L  C L       I S L     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 247 SFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELS--LNRFRGKTP 304
             N L       +          I    L        G       L     L        
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 305 HSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFL 364
                  +L    L       E         S    +       ++       ++     
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 365 EFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEF 424
           E         +      +    LE   ++S+        + + +         +   +  
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 425 PNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNY 484
              L          L    I            +        S   L              
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 485 DGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSG 544
              TL      L+         T       +S+  +  F +    ++  + D     L  
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL-- 360

Query: 545 LLPQCLDNFSDHLSILDLQHNKF----CGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLV 600
              Q L      L +L L         C S+  T L+  SL  +DLS+N L       LV
Sbjct: 361 --CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418

Query: 601 -----NCSSLKFLDLGNNQISGTFPSWLGTLRELN 630
                    L+ L L +   S      L  L +  
Sbjct: 419 ESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.7 bits (150), Expect = 1e-10
 Identities = 44/477 (9%), Positives = 106/477 (22%), Gaps = 42/477 (8%)

Query: 336 SLEGLDISECKFS-SQIPSSLRNLAQLKFLEFSHNNFS--GPIDLDMFLVNFKHLEHLSL 392
            ++ LDI   + S ++    L  L Q + +       +     D+   L     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 393 SSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWL 452
            SN L            +     ++  +L            L     +   +        
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 453 IEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLV 512
           +              +      +  + +          L+      P       + + + 
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 513 SNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIP 572
                 G          +  ++  L   +       C D      S   L+      +  
Sbjct: 183 EA----GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 238

Query: 573 QTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVL 632
                      +    + L+          +          +   +         EL   
Sbjct: 239 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 298

Query: 633 ILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYME 692
             +      +         + +      +       + ++                    
Sbjct: 299 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI----------- 347

Query: 693 GMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGE----IPTS 748
                            +       +       +  + L  + L+           +  +
Sbjct: 348 ---------------SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 392

Query: 749 IANLKGLQVLSLANNSLHGHILSCLG-----NLTGLESLDLSNNKFSGQIPQQLVDL 800
           +     L+ L L+NN L    +  L          LE L L +  +S ++  +L  L
Sbjct: 393 LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (138), Expect = 3e-09
 Identities = 54/449 (12%), Positives = 112/449 (24%), Gaps = 24/449 (5%)

Query: 387 LEHLSLSSNRLS-LFTKAIFNTSQKFNFVGLRSCNLNE-----FPNFLKNQHYLEVLDLS 440
           ++ L +    LS      +    Q+   V L  C L E       + L+    L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 441 CNKIHGKVPKWLIEPSMQNFSYL-NLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGP 499
            N++       +++        +  LS                           +     
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 500 LPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSI 559
           L     Q     + +     +       S ++     L+    +    + L   ++ ++ 
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 560 LDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTF 619
             ++            L    L    ++ +  +          S  +     N       
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 620 PSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNA 679
                 L   +      ++L  +              +  +   + + K  S        
Sbjct: 244 AELCPGLLHPS------SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 297

Query: 680 MQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSN 739
                  E     G       V   +      S   S   Q     ++      +  +  
Sbjct: 298 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 357

Query: 740 RFDGEIPTSIANLKGLQVLSLANNSLHG----HILSCLGNLTGLESLDLSNNKFSGQIPQ 795
           R   +          L+VL LA+  +       + + L     L  LDLSNN        
Sbjct: 358 RELCQGLGQ--PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 415

Query: 796 QLVD-----LTFLEFFNVSNNNLTGPIPQ 819
           QLV+        LE   + +   +  +  
Sbjct: 416 QLVESVRQPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (137), Expect = 3e-09
 Identities = 51/434 (11%), Positives = 108/434 (24%), Gaps = 9/434 (2%)

Query: 216 SLTLLSLSGCELR-GRIPSLLGNLTKLMYLDLSFNNL----LGELPTSIGNLDCLKRLDI 270
            +  L +   EL   R   LL  L +   + L    L      ++ +++     L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 271 SWNELSGELPASIGNLASLEQL---ELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGEL 327
             NEL       +            +LSL              + L  L         + 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 328 PASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHL 387
                 L+ L    +       ++     +L+       +    + P   ++ + N    
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 388 EHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGK 447
           E       +    +       +  +         +            E+   S       
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 448 VPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQT 507
           + +        +     L         +      R           +     L     + 
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 508 KHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKF 567
               +       +  +    S  +      S           L   ++ L    ++    
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 568 CGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLR 627
               P + L    L   D+SD+     +  +L+   SL+ LDL NN +       L    
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCS-SLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 628 ELNVLILKSNKLHG 641
                +L+   L+ 
Sbjct: 422 RQPGCLLEQLVLYD 435

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 2e-05
 Identities = 20/185 (10%), Positives = 47/185 (25%), Gaps = 5/185 (2%)

Query: 554 SDHLSILDLQHNKFCGSIPQTFLSG-RSLMMIDLSDNLLQGR----IPRSLVNCSSLKFL 608
           S  +  LD+Q  +   +     L   +   ++ L D  L       I  +L    +L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 609 DLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGK 668
           +L +N++       +    +     ++   L                     +       
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 669 LPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVP 728
                      +          +E +   +  +S A+       L      + ++     
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 729 NFLTG 733
               G
Sbjct: 181 INEAG 185

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 2e-04
 Identities = 57/474 (12%), Positives = 114/474 (24%), Gaps = 42/474 (8%)

Query: 111 VHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGF----FGQIPSEILELSNLVSLD 166
           + ++ LD+       +     +  L +   + L   G        I S +     L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 167 LSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCE 226
           L  N                           LG V +   +         +  LSL  C 
Sbjct: 62  LRSNE--------------------------LGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

Query: 227 LRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNL 286
           L G    +L +  + +      +     L  +   L C   LD        +L     + 
Sbjct: 96  LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS- 154

Query: 287 ASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECK 346
                 E   +  R K        +               L  S   L +L+        
Sbjct: 155 --AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS 212

Query: 347 FSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFN 406
            + +    +             +N  G + +        H      +         A   
Sbjct: 213 DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC 272

Query: 407 TSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLS 466
                      S                 +L  +  +   ++    ++      +  +  
Sbjct: 273 GDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF 332

Query: 467 HNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWIC 526
            + L              +    D     L   L  P    +   +++  ++      + 
Sbjct: 333 SSVLAQNRFLLELQ--ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 390

Query: 527 NS---SNSLEILDLSYNNLSG----LLPQCLDNFSDHLSILDLQHNKFCGSIPQ 573
            +   ++SL  LDLS N L       L + +      L  L L    +   +  
Sbjct: 391 ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.004
 Identities = 56/458 (12%), Positives = 106/458 (23%), Gaps = 42/458 (9%)

Query: 138 LSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELA 197
           +    LS A +   +P     L     + L       L E +  ++ + ++    L EL 
Sbjct: 9   IQCEELSDARWAELLPL----LQQCQVVRLDDC---GLTEARCKDISSALRVNPALAELN 61

Query: 198 LGGVTISSPIPHSLA-----NLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLL 252
           L    +     H +          +  LSL  C L G    +L +  + +      +   
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 121

Query: 253 GELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTR 312
             L  +   L C   LD        +L     + AS E L   L         ++ N   
Sbjct: 122 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 181

Query: 313 LYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFS 372
                        + P     L+       S+         + +   +   L  +     
Sbjct: 182 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241

Query: 373 GPIDLDMFLVNFKHLEHLSLSSNR----------------LSLFTKAIFNTSQKFNFVGL 416
           G  +L   L++                                  +     ++  +    
Sbjct: 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 301

Query: 417 RSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQH 476
             C     P       +++    +                +      N            
Sbjct: 302 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 361

Query: 477 PMFFPRNYDGFTLDLSYNYLQGPLPVPPPQT-------KHYLVSNNSLTGKIPFWIC--- 526
                       L L+   +          T       +   +SNN L       +    
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 527 -NSSNSLEILDLSYNNLSGLLPQCLDNFSD---HLSIL 560
                 LE L L     S  +   L         L ++
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 2e-08
 Identities = 45/283 (15%), Positives = 89/283 (31%), Gaps = 29/283 (10%)

Query: 535 LDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGR 594
           LDL+  NL   +   L   S  +       +     + + F S   +  +DLS+++++  
Sbjct: 5   LDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVS 61

Query: 595 -IPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFP 653
            +   L  CS L+ L L   ++S    + L     L  L L                   
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 654 ELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSL 713
            L  ++                C++  +      + ++   I    L  Y          
Sbjct: 122 RLDELN-------------LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS 168

Query: 714 TMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLAN-NSLHGHILSC 772
           T+  +   + +  + +        S     +       L  LQ LSL+    +    L  
Sbjct: 169 TLVRRCPNLVHLDLSD--------SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 220

Query: 773 LGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTG 815
           LG +  L++L +      G +      L  L    ++ ++ T 
Sbjct: 221 LGEIPTLKTLQVFGIVPDGTLQLLKEALPHL---QINCSHFTT 260

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 4e-07
 Identities = 42/266 (15%), Positives = 77/266 (28%), Gaps = 14/266 (5%)

Query: 266 KRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPH-SMGNFTRLYWLSLASNDFS 324
           + LD++   L    P   G L S   +     R     P     +  R+  + L+++   
Sbjct: 3   QTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 59

Query: 325 GE-LPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNF---SGPIDLDMF 380
              L         L+ L +   + S  I ++L   + L  L  S  +         L   
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 381 LVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKN----QHYLEV 436
                 L               A+ + S+    + L     N   + L         L  
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 437 LDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYL 496
           LDLS + +            +    +L+LS  + I   +  +         TL +     
Sbjct: 180 LDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDII-PETLLELGEIPTLKTLQVFGIVP 237

Query: 497 QGPLPVPPPQTKHYLVSNNSLTGKIP 522
            G L +      H  ++ +  T    
Sbjct: 238 DGTLQLLKEALPHLQINCSHFTTIAR 263

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 9e-07
 Identities = 50/270 (18%), Positives = 89/270 (32%), Gaps = 21/270 (7%)

Query: 116 LDLAFNYFICSEIPPEIINLSRLSYLNLS-SAGFFGQIPSEILELSNLVSLDLSHNSYYN 174
           LDL          P     L     +       F  Q  +E      +  +DLS++    
Sbjct: 5   LDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV--- 57

Query: 175 LIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSL 234
              ++   L  ++ + + L+ L+L G+ +S PI ++LA  S+L  L+LSGC         
Sbjct: 58  ---IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ 114

Query: 235 --------LGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNL 286
                   L  L      D +  ++   +      +  L       N    +L   +   
Sbjct: 115 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 174

Query: 287 ASLEQLELSLN-RFRGKTPHSMGNFTRLYWLSLAS-NDFSGELPASFGNLRSLEGLDISE 344
            +L  L+LS +   +            L  LSL+   D   E     G + +L+ L +  
Sbjct: 175 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 234

Query: 345 CKFSSQIPSSLRNLAQLKFLEFSHNNFSGP 374
                 +      L  L+         + P
Sbjct: 235 IVPDGTLQLLKEALPHLQINCSHFTTIARP 264

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 48/330 (14%), Positives = 100/330 (30%), Gaps = 56/330 (16%)

Query: 89  KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGF 148
            LDL+   L   +       +L+    +          +   E  +  R+ +        
Sbjct: 4   TLDLTGKNLHPDV-----TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQH-------- 50

Query: 149 FGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIP 208
                           +DLS++       ++   L  ++ + + L+ L+L G+ +S PI 
Sbjct: 51  ----------------MDLSNSV------IEVSTLHGILSQCSKLQNLSLEGLRLSDPIV 88

Query: 209 HSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRL 268
           ++LA  S+L  L+LSGC             +     +L+ +         +         
Sbjct: 89  NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE 148

Query: 269 DISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELP 328
            I+   LSG                    +    +         ++     S     +  
Sbjct: 149 TITQLNLSGYRK---------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF 193

Query: 329 ASFGNLRSLEGLDISECKF-SSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHL 387
             F  L  L+ L +S C     +    L  +  LK L        G +      +  + L
Sbjct: 194 QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL-----QVFGIVPDGTLQLLKEAL 248

Query: 388 EHLSLSSNRLSLFTKAIFNTSQKFNFVGLR 417
            HL ++ +  +   +      +     G++
Sbjct: 249 PHLQINCSHFTTIARPTIGNKKNQEIWGIK 278

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 40/316 (12%), Positives = 80/316 (25%), Gaps = 59/316 (18%)

Query: 488 TLDLSYNYLQGPLP--VPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGL 545
           TLDL+   L   +   +       +    + +    P     S   ++ +DLS + +   
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQ--PLAEHFSPFRVQHMDLSNSVIEV- 60

Query: 546 LPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSL 605
                                                            +   L  CS L
Sbjct: 61  -----------------------------------------------STLHGILSQCSKL 73

Query: 606 KFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRF 665
           + L L   ++S    + L     L  L L                    L  ++LS    
Sbjct: 74  QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD 133

Query: 666 TGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPF---ALVSYAALGIYDYSLTMSNKGQMM 722
             +   +      +  +   +   Y + +        +     L   D S ++  K    
Sbjct: 134 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF 193

Query: 723 SYDKVPNFLTGVILSS-NRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLES 781
                 N+L  + LS       E    +  +  L+ L +      G +      L     
Sbjct: 194 QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALP---H 250

Query: 782 LDLSNNKFSGQIPQQL 797
           L ++ + F+      +
Sbjct: 251 LQINCSHFTTIARPTI 266

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.004
 Identities = 11/85 (12%), Positives = 31/85 (36%), Gaps = 3/85 (3%)

Query: 736 LSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSG-QIP 794
           L+      ++   + +  G+       + +   +     +   ++ +DLSN+      + 
Sbjct: 7   LTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVSTLH 64

Query: 795 QQLVDLTFLEFFNVSNNNLTGPIPQ 819
             L   + L+  ++    L+ PI  
Sbjct: 65  GILSQCSKLQNLSLEGLRLSDPIVN 89

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (126), Expect = 3e-08
 Identities = 29/227 (12%), Positives = 58/227 (25%), Gaps = 5/227 (2%)

Query: 414 VGLRSCNLNEFP-NFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFL-I 471
              +   + E P +  +N      L     K+                  ++ +     I
Sbjct: 13  FLCQESKVTEIPSDLPRN---AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 69

Query: 472 GFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNS 531
                      +        +  Y+        P  ++ L+SN  +         +S   
Sbjct: 70  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 129

Query: 532 LEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLL 591
           + +      N+  +        S    IL L  N         F   +   +    +N L
Sbjct: 130 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL 189

Query: 592 QGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNK 638
           +          S    LD+   +I       L  L++L      + K
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (117), Expect = 4e-07
 Identities = 26/228 (11%), Positives = 64/228 (28%), Gaps = 5/228 (2%)

Query: 584 IDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMI 643
               ++ +   IP  L    +   L     ++            +L  + +  N +  +I
Sbjct: 13  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 69

Query: 644 REPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSY 703
                        I     N      P  +    N   ++ ++    ++ +     + S 
Sbjct: 70  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN--TGIKHLPDVHKIHSL 127

Query: 704 AALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANN 763
             + +        +  +  S+  +      + L+ N        +    +  ++    NN
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN 187

Query: 764 SLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNN 811
           +L           +G   LD+S  +        L +L  L   +  N 
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 1e-06
 Identities = 26/233 (11%), Positives = 64/233 (27%), Gaps = 5/233 (2%)

Query: 556 HLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQI 615
              +   Q +K    IP      R+ + +      L+     +      L+ +++  N +
Sbjct: 9   SNRVFLCQESKV-TEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 616 SGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQ 675
                + + +       I      + +   P      P L+ + +SN             
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 676 CWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVI 735
               + +     +         F  +S+ ++ ++        +                +
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN--KNGIQEIHNCAFNGTQLDELNL 183

Query: 736 LSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNK 788
             +N  +           G  +L ++   +H      L NL  L +    N K
Sbjct: 184 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 3/51 (5%)

Query: 207 IPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPT 257
                   S   +L +S   +       L NL KL          L +LPT
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST---YNLKKLPT 240

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 4e-07
 Identities = 39/234 (16%), Positives = 64/234 (27%), Gaps = 37/234 (15%)

Query: 580 SLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKL 639
           S + ++     L   +P  L        L L  N +     + L     L  L L   +L
Sbjct: 11  SHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 640 HGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFA 699
             +  +                       LP       +  Q+ +   L      +    
Sbjct: 68  TKLQVDGT---------------------LPVLGTLDLSHNQLQSLPLLGQTLPALTVLD 106

Query: 700 LVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLS 759
           +       +   +L    + Q +                N      P  +     L+ LS
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKG------------NELKTLPPGLLTPTPKLEKLS 154

Query: 760 LANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNL 813
           LANN+L       L  L  L++L L  N     IP+       L F  +  N  
Sbjct: 155 LANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 4e-06
 Identities = 42/213 (19%), Positives = 66/213 (30%), Gaps = 13/213 (6%)

Query: 187 VKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDL 246
           V K+ +  E+      +++ +P  L      T+L LS   L     + L   T+L  L+L
Sbjct: 6   VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 247 SFNNLLGELPTSIGNLDCLKRLDISWNELSGE--LPASIGNLASLEQLELSLNRFRGKTP 304
                     T +     L  L       +    LP     L +L  L++S NR      
Sbjct: 63  DRAE-----LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 305 HSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFL 364
            ++     L  L L  N+     P        LE L ++    +      L  L  L  L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 365 EFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRL 397
               N+      +         L    L  N  
Sbjct: 178 LLQENSL---YTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 9e-06
 Identities = 50/241 (20%), Positives = 81/241 (33%), Gaps = 38/241 (15%)

Query: 131 EIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKL 190
           E+  ++    +N         +P ++    +   L LS N                    
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENL------------------- 42

Query: 191 TNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNN 250
                       + +    +L   + LT L+L   EL        G L  L  LDLS N 
Sbjct: 43  ------------LYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQ 88

Query: 251 LLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNF 310
           L             L  LD+S+N L+     ++  L  L++L L  N  +   P  +   
Sbjct: 89  LQSLPLLGQTL-PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 311 TRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNN 370
            +L  LSLA+N+ +         L +L+ L + E    + IP        L F     N 
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNP 206

Query: 371 F 371
           +
Sbjct: 207 W 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 2e-05
 Identities = 34/243 (13%), Positives = 66/243 (27%), Gaps = 37/243 (15%)

Query: 547 PQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLK 606
           P C  +       ++        ++P      +   ++ LS+NLL      +L+  + L 
Sbjct: 2   PICEVSKVASHLEVNCDKRNL-TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 607 FLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFT 666
            L+L   +++                                    P L  +DLS+N+  
Sbjct: 59  QLNLDRAELTKLQVDG----------------------------TLPVLGTLDLSHNQLQ 90

Query: 667 GKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDK 726
                        +  V+ + L  +                  +   T+       +   
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 727 VPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSN 786
                    L++N         +  L+ L  L L  NSL+  I         L    L  
Sbjct: 151 EKLS-----LANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHG 204

Query: 787 NKF 789
           N +
Sbjct: 205 NPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 7e-05
 Identities = 35/185 (18%), Positives = 58/185 (31%), Gaps = 8/185 (4%)

Query: 384 FKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNL-NEFPNFLKNQHYLEVLDLSCN 442
            K    L LS N L  F+ A         +  L   NL       L+    L VL     
Sbjct: 30  PKDTTILHLSENLLYTFSLATLM-----PYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL 84

Query: 443 KIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPV 502
             +      L+  ++   + L++S N L       +          L  +      P  +
Sbjct: 85  SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144

Query: 503 PPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDL 562
            P      L   N+   ++P  + N   +L+ L L  N+L  +      +    L    L
Sbjct: 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS--HLLPFAFL 202

Query: 563 QHNKF 567
             N +
Sbjct: 203 HGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 1e-04
 Identities = 38/191 (19%), Positives = 65/191 (34%), Gaps = 21/191 (10%)

Query: 126 SEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGN 185
           + +PP++      + L+LS    +    + ++  + L  L+L       L    +  L  
Sbjct: 23  TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPV 78

Query: 186 LVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGR--------------- 230
           L     +  +L    +   +    ++ ++S   L SL    LRG                
Sbjct: 79  LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138

Query: 231 -IPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASL 289
             P LL    KL  L L+ NNL       +  L+ L  L +  N L   +P        L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197

Query: 290 EQLELSLNRFR 300
               L  N + 
Sbjct: 198 PFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 6e-04
 Identities = 43/216 (19%), Positives = 65/216 (30%), Gaps = 24/216 (11%)

Query: 482 RNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNN 541
           +      ++     L    P  P  T    +S N L       +   +  L  L+L    
Sbjct: 8   KVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTR-LTQLNLDRAE 66

Query: 542 ---------LSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDL------ 586
                    L  L    L +       L  Q       +  +F    SL +  L      
Sbjct: 67  LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126

Query: 587 -----SDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHG 641
                  N L+   P  L     L+ L L NN ++      L  L  L+ L+L+ N L+ 
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186

Query: 642 MIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCW 677
           +   P    G   L    L  N +       YF+ W
Sbjct: 187 I---PKGFFGSHLLPFAFLHGNPWLCNCEILYFRRW 219

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 1e-06
 Identities = 53/325 (16%), Positives = 101/325 (31%), Gaps = 25/325 (7%)

Query: 239 TKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNR 298
            +   L+L+ N  L  LP    +L   + L  S N L+ ELP    +L SL     +L  
Sbjct: 38  RQAHELELN-NLGLSSLPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 299 FRGKTP---------HSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSS 349
                P         + +     L   S                        I+      
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 350 QIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQ 409
           +    L+NL  L  +   +N+     DL + L +     ++      L          + 
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 410 KFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNF 469
                 L     +     +++ +  ++ +L  +     V + +     +    L   +  
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 470 LIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSS 529
                      P       L++S N L   LP  PP+ +  + S N L       +    
Sbjct: 273 SNEIRSLCDLPPSLE---ELNVSNNKLIE-LPALPPRLERLIASFNHLAE-----VPELP 323

Query: 530 NSLEILDLSYNNLSGL--LPQCLDN 552
            +L+ L + YN L     +P+ +++
Sbjct: 324 QNLKQLHVEYNPLREFPDIPESVED 348

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.3 bits (113), Expect = 2e-06
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 10/86 (11%)

Query: 203 ISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNL 262
            S+ I        SL  L++S  +L   +P+L   L +L     SFN+ L E+P    N 
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNH-LAEVPELPQN- 325

Query: 263 DCLKRLDISWNELSG--ELPASIGNL 286
             LK+L + +N L    ++P S+ +L
Sbjct: 326 --LKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.3 bits (113), Expect = 3e-06
 Identities = 48/356 (13%), Positives = 84/356 (23%), Gaps = 37/356 (10%)

Query: 321 NDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMF 380
           +++    P   G  R +    + +C              Q   LE ++   S   +L   
Sbjct: 11  SEWERNAPPGNGEQREMAVSRLRDCLDR-----------QAHELELNNLGLSSLPEL--- 56

Query: 381 LVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLS 440
                HLE L  S N L+   +   +  +           L++ P  L+           
Sbjct: 57  ---PPHLESLVASCNSLTELPELPQSL-KSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK 112

Query: 441 CNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDL--SYNYLQG 498
             ++       +I+    +   L      L              +   L    +      
Sbjct: 113 LPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN 172

Query: 499 PLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLD------- 551
            L   P                       +   L  +    N L  L             
Sbjct: 173 SLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVR 232

Query: 552 NFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLG 611
           +          Q   F       F     L       N     I        SL+ L++ 
Sbjct: 233 DNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVS 292

Query: 612 NNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTG 667
           NN++    P+    L  L       N L  +   P        L+ + +  N    
Sbjct: 293 NNKLI-ELPALPPRLERLI---ASFNHLAEVPELP------QNLKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.5 bits (111), Expect = 4e-06
 Identities = 56/327 (17%), Positives = 108/327 (33%), Gaps = 31/327 (9%)

Query: 489 LDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQ 548
           L+L+   L   LP  PP  +  + S NSLT ++P    +    L+ L +  NNL     +
Sbjct: 43  LELNNLGLSS-LPELPPHLESLVASCNSLT-ELPELPQS----LKSLLVDNNNL-----K 91

Query: 549 CLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFL 608
            L +    L  L + +N+          S   ++ +D         + +      SL+F+
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVD------NNSLKKLPDLPPSLEFI 145

Query: 609 DLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGK 668
             GNNQ+                    S K    +             + +L   +    
Sbjct: 146 AAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPF 205

Query: 669 LPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVP 728
           L + Y        + +         +   +         + +   +++      +     
Sbjct: 206 LTTIYADNNLLKTLPDLPPSLEALNVRDNYLT------DLPELPQSLTFLDVSENIFSGL 259

Query: 729 NFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNK 788
           + L   +   N    EI +       L+ L+++NN L   + +    L   E L  S N 
Sbjct: 260 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNH 315

Query: 789 FSGQIPQQLVDLTFLEFFNVSNNNLTG 815
            + ++P+   +L  L   +V  N L  
Sbjct: 316 LA-EVPELPQNLKQL---HVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 49/291 (16%), Positives = 79/291 (27%), Gaps = 17/291 (5%)

Query: 530 NSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKF------CGSIPQTFLSGRSLMM 583
                L+L+   LS L P+       HL  L    N          S+    +   +L  
Sbjct: 38  RQAHELELNNLGLSSL-PELPP----HLESLVASCNSLTELPELPQSLKSLLVDNNNLKA 92

Query: 584 IDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMI 643
           +     LL+     +       +  +    +I     + L  L +L   +      +  +
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 644 REPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSY 703
            E       P L  I   NN                            E    PF    Y
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE--ELPELQNLPFLTTIY 210

Query: 704 AALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANN 763
           A   +      +    + ++           +  S  F        + L  L       N
Sbjct: 211 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 270

Query: 764 SLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLT 814
           +    I S       LE L++SNNK   ++P     L  L     S N+L 
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLA 317

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 4e-04
 Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 9/93 (9%)

Query: 222 LSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPA 281
                    I SL      L  L++S N L+ ELP        L+RL  S+N L+ E+P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPE 321

Query: 282 SIGNLASLEQLELSLNRFRGKTPHSMGNFTRLY 314
              N   L+QL +  N  R + P    +   L 
Sbjct: 322 LPQN---LKQLHVEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.003
 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 10/96 (10%)

Query: 242 MYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRG 301
                  N    E+ +       L+ L++S N+L  ELPA       LE+L  S N    
Sbjct: 263 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHL-A 317

Query: 302 KTPHSMGNFTRLYWLSLASNDFSG--ELPASFGNLR 335
           + P    N   L  L +  N      ++P S  +LR
Sbjct: 318 EVPELPQN---LKQLHVEYNPLREFPDIPESVEDLR 350

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.3 bits (111), Expect = 2e-06
 Identities = 26/232 (11%), Positives = 58/232 (25%), Gaps = 22/232 (9%)

Query: 333 NLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSL 392
            L +   +   +   +  +  +  +L  +  L       +    +        +L  L L
Sbjct: 17  ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEGVQ----YLNNLIGLEL 70

Query: 393 SSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWL 452
             N+++                 L      E                S   +     +  
Sbjct: 71  KDNQIT----------DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQIT 120

Query: 453 IEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLV 512
               +   S L + +  L                +    +             +      
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA 180

Query: 513 SNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQH 564
            +N ++   P     +   L  + L  N +S + P  L N S +L I+ L +
Sbjct: 181 DDNKISDISPLASLPN---LIEVHLKNNQISDVSP--LANTS-NLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 3e-06
 Identities = 33/232 (14%), Positives = 70/232 (30%), Gaps = 24/232 (10%)

Query: 579 RSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNK 638
            + + I    + +   + ++  +   +  L      ++      +  L  L  L LK N+
Sbjct: 19  ANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQ 74

Query: 639 LHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPF 698
           +  +    N          +  +  +    +          +     +++  + G+    
Sbjct: 75  ITDLAPLKN--LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 699 ALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVL 758
            L            L      Q +S                       T +ANL  L  L
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVS--------------DLTPLANLSKLTTL 178

Query: 759 SLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSN 810
              +N +    +S L +L  L  + L NN+ S   P  L + + L    ++N
Sbjct: 179 KADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 2e-05
 Identities = 35/220 (15%), Positives = 65/220 (29%), Gaps = 24/220 (10%)

Query: 188 KKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLS 247
             L N  ++A G   ++  +  + A+L  +T LS  G  +       +  L  L+ L+L 
Sbjct: 16  PALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELK 71

Query: 248 FNNLLGELPTSIGNLDCLKRLDISWNELSGELPA--------------SIGNLASLEQLE 293
            N +    P           L  +  +    +                +     +     
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 294 LSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPS 353
             L     +  +            L+  +          NL  L  L   + K S   P 
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP- 190

Query: 354 SLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLS 393
            L +L  L  +   +N  S    L     N  +L  ++L+
Sbjct: 191 -LASLPNLIEVHLKNNQISDVSPLA----NTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 6e-04
 Identities = 30/232 (12%), Positives = 63/232 (27%), Gaps = 22/232 (9%)

Query: 357 NLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGL 416
            LA    +    +N +  +       +   +  LS     ++                G+
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA----DLDGITTLSAFGTGVT-------------TIEGV 59

Query: 417 RSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQH 476
           +  N         NQ        +  KI           ++   + L       +   Q 
Sbjct: 60  QYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI 119

Query: 477 PMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILD 536
               P         L  +  Q     P     +    +             + + L  L 
Sbjct: 120 TDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLK 179

Query: 537 LSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSD 588
              N +S + P  L +   +L  + L++N+     P    S  +L ++ L++
Sbjct: 180 ADDNKISDISP--LASLP-NLIEVHLKNNQISDVSPLANTS--NLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 30/231 (12%), Positives = 65/231 (28%), Gaps = 21/231 (9%)

Query: 237 NLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSL 296
            L   + +    +N+   +  +  +LD +  L      ++      +  L +L  LEL  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 297 NRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLR 356
           N+     P           LS         +                         S+L+
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 357 NLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGL 416
            L        + +  +G  +L    +    +  L+  +N   L T    +          
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD---------- 182

Query: 417 RSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSH 467
               +++        + L  + L  N+I    P      +  N   + L++
Sbjct: 183 --NKISDISPLASLPN-LIEVHLKNNQISDVSPLA----NTSNLFIVTLTN 226

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (102), Expect = 1e-05
 Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 12/126 (9%)

Query: 243 YLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGK 302
            L L+  +L   +   +  L  +  LD+S N L    P ++  L  LE   L  +    +
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLE--VLQASDNALE 56

Query: 303 TPHSMGNFTRLYWLSLASNDF-SGELPASFGNLRSLEGLDISECKFS------SQIPSSL 355
               + N  RL  L L +N            +   L  L++             ++   L
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 356 RNLAQL 361
            +++ +
Sbjct: 117 PSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 6/108 (5%)

Query: 220 LSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGEL 279
           L L+  +L   +   L  L  + +LDLS N L    P ++  L CL+ L  S N    E 
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNA--LEN 57

Query: 280 PASIGNLASLEQLELSLNRFRG-KTPHSMGNFTRLYWLSLASNDFSGE 326
              + NL  L++L L  NR +       + +  RL  L+L  N    E
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 9/118 (7%)

Query: 513 SNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIP 572
           ++  LT             +  LDLS+N L           +    +  LQ +       
Sbjct: 6   AHKDLTVLCHL---EQLLLVTHLDLSHNRLRA----LPPALAALRCLEVLQASDNALENV 58

Query: 573 QTFLSGRSLMMIDLSDNLLQG-RIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLREL 629
               +   L  + L +N LQ     + LV+C  L  L+L  N +          L E+
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 6e-04
 Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 6/110 (5%)

Query: 436 VLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNY 495
           VL L+   +   V   L    +   ++L+LSHN L                   D +   
Sbjct: 2   VLHLAHKDL--TVLCHL--EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 57

Query: 496 LQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGL 545
           + G      P+ +  L+ NN L          S   L +L+L  N+L   
Sbjct: 58  VDGV--ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 9e-04
 Identities = 23/111 (20%), Positives = 35/111 (31%), Gaps = 7/111 (6%)

Query: 362 KFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNL 421
           + L  +H + +    L+        + HL LS NRL     A+             +   
Sbjct: 1   RVLHLAHKDLTVLCHLE----QLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE 56

Query: 422 NEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIG 472
           N       N   L+ L L  N++        +  S      LNL  N L  
Sbjct: 57  NVDGVA--NLPRLQELLLCNNRLQQSAAIQPLV-SCPRLVLLNLQGNSLCQ 104

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.9 bits (104), Expect = 3e-05
 Identities = 39/333 (11%), Positives = 96/333 (28%), Gaps = 27/333 (8%)

Query: 528 SSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKF----CGSIPQTFLSGRSLMM 583
              SL++  ++  +   +    L++  D +  + L  N         + +   S + L +
Sbjct: 6   EGKSLKLDAITTEDEKSVFAVLLED--DSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 584 IDLSDNLLQ----------GRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLI 633
            + SD                + ++L+ C  L  + L +N    T    L      +  +
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 634 LKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEG 693
                 +  +           L+ + ++                N ++  +  E      
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 694 MIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLK 753
                  V     GI    +       +    ++          ++     +  ++ +  
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243

Query: 754 GLQVLSLANNSLHGHILSCLGN------LTGLESLDLSNNKFSGQIPQQLVD-----LTF 802
            L+ L L +  L     + + +        GL++L L  N+      + L       +  
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 303

Query: 803 LEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNL 835
           L F  ++ N  +      ++      T   G L
Sbjct: 304 LLFLELNGNRFSEEDDVVDEIREVFSTRGRGEL 336

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 45/356 (12%), Positives = 87/356 (24%), Gaps = 36/356 (10%)

Query: 216 SLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGE----LPTSIGNLDCLKRLDIS 271
           SL L +++  + +  + ++L     +  + LS N +  E    L  +I +   L+  + S
Sbjct: 9   SLKLDAITTEDEKS-VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 272 WN---ELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELP 328
                 +  E+P ++  L         L+  R                 L+ +     L 
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 329 ASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLE 388
                L    G  I+       +    +N   L+ +    N        +       H  
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 389 HLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKV 448
                     L T  +     +   +         +   LK     +            +
Sbjct: 188 ----------LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 237

Query: 449 PKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTK 508
                    +      L                 N    TL L YN ++           
Sbjct: 238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR------ 291

Query: 509 HYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQH 564
                       +   I      L  L+L+ N  S      +D   +  S      
Sbjct: 292 -----------TLKTVIDEKMPDLLFLELNGNRFSE-EDDVVDEIREVFSTRGRGE 335

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 34/205 (16%), Positives = 64/205 (31%), Gaps = 18/205 (8%)

Query: 190 LTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFN 249
                +  L   +++  +  +   L+S+  +  +  +++      +  L  +  L L+ N
Sbjct: 23  FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN 78

Query: 250 NLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGN 309
            L             L  L         E      +     +   SL+          G 
Sbjct: 79  KLTDI--------KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGL 130

Query: 310 FTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHN 369
                  SL   +           L  L+ L + + + S  +P  L  L +L+ L  S N
Sbjct: 131 VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188

Query: 370 NFSGPIDLDMFLVNFKHLEHLSLSS 394
           + S    L       K+L+ L L S
Sbjct: 189 HISDLRALA----GLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 9e-04
 Identities = 25/210 (11%), Positives = 58/210 (27%), Gaps = 22/210 (10%)

Query: 601 NCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDL 660
             +     +L    ++         L  ++ +I  ++ +  +          P +  + L
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQY----LPNVTKLFL 75

Query: 661 SNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQ 720
           + N+ T   P    +    + +                                + +  Q
Sbjct: 76  NGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ 135

Query: 721 MMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLE 780
           + S     N +T + + S     +  +                      +  L  LT L+
Sbjct: 136 LESLYLGNNKITDITVLSRLTKLDTLS--------------LEDNQISDIVPLAGLTKLQ 181

Query: 781 SLDLSNNKFSGQIPQQLVDLTFLEFFNVSN 810
           +L LS N  S    + L  L  L+   + +
Sbjct: 182 NLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.2 bits (92), Expect = 4e-04
 Identities = 37/172 (21%), Positives = 60/172 (34%), Gaps = 22/172 (12%)

Query: 513 SNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIP 572
           +   L  +IP  I         L L+ N L  +    L     HL  L+L+ N+  G  P
Sbjct: 16  TGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP 71

Query: 573 QTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLREL--- 629
             F     +  + L +N ++    +  +    LK L+L +NQIS   P     L  L   
Sbjct: 72  NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131

Query: 630 -----------NVLILKSNKLHGMIREPNTGCGFPE----LRIIDLSNNRFT 666
                      ++           +      CG P     ++I DL ++ F 
Sbjct: 132 NLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFK 183

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 31/182 (17%), Positives = 63/182 (34%), Gaps = 12/182 (6%)

Query: 151 QIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHS 210
           +IP +I    +   L L+ N    +                +L +L L    ++   P++
Sbjct: 22  EIPRDIP--LHTTELLLNDNELGRISSDGLFGRL------PHLVKLELKRNQLTGIEPNA 73

Query: 211 LANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDI 270
               S +  L L   +++     +   L +L  L+L  N +   +P S  +L+ L  L++
Sbjct: 74  FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133

Query: 271 SWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPAS 330
             +               L +  L+    R   P  + +   +    L  ++F      S
Sbjct: 134 -ASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRD---VQIKDLPHSEFKCSSENS 189

Query: 331 FG 332
            G
Sbjct: 190 EG 191

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 5e-04
 Identities = 23/136 (16%), Positives = 39/136 (28%), Gaps = 7/136 (5%)

Query: 210 SLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLD 269
              N      L L G ++   I +L   L +   +D S N +          L  LK L 
Sbjct: 13  QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLL 69

Query: 270 ISWNELSGELPASIGNLASLEQLELS---LNRFRGKTPHSMGNFTRLYWLS-LASNDFSG 325
           ++ N +          L  L +L L+   L       P +         +      +   
Sbjct: 70  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 129

Query: 326 ELPASFGNLRSLEGLD 341
                   +  +  LD
Sbjct: 130 YRLYVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 7/96 (7%)

Query: 586 LSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIRE 645
           L+  L++        N    + LDL   +I     +   TL + + +    N++  +   
Sbjct: 3   LTAELIEQAA--QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGF 59

Query: 646 PNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQ 681
           P        L+ + ++NNR             +  +
Sbjct: 60  PL----LRRLKTLLVNNNRICRIGEGLDQALPDLTE 91

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 6e-04
 Identities = 30/132 (22%), Positives = 44/132 (33%), Gaps = 11/132 (8%)

Query: 273 NELSGE----LPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELP 328
           NEL  E    L   +       Q  L L   R  +   +        L+   +  +  L 
Sbjct: 2   NELKPEQVEQLKLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLNR-RSSMAATLR 58

Query: 329 ASFGNLRSLEGLDISECKFSSQ--IPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKH 386
               N+  L  L++S  +      + S ++    LK L  S N      +LD        
Sbjct: 59  IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI--KGLK 116

Query: 387 LEHLSLSSNRLS 398
           LE L L  N LS
Sbjct: 117 LEELWLDGNSLS 128

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.003
 Identities = 23/128 (17%), Positives = 34/128 (26%), Gaps = 4/128 (3%)

Query: 377 LDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEV 436
           L + +         +L    L                +  RS          +N   L  
Sbjct: 12  LKLIMSKRYDGSQQALDLKGLRSDP--DLVAQNIDVVLNRRSSMAATLRIIEENIPELLS 69

Query: 437 LDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYL 496
           L+LS N+++       I     N   LNLS N L       +   +      L L  N L
Sbjct: 70  LNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSL 127

Query: 497 QGPLPVPP 504
                   
Sbjct: 128 SDTFRDQS 135

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 5/145 (3%)

Query: 728 PNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHI-LSCLGNLTGLESLDLSN 786
           P+  +G+  + +    +    +   + L  L + N     H+ L  L  L  L +L +  
Sbjct: 7   PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 787 NKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLCG---KPLP 843
           +      P        L   N+S N L     +  Q  +  +   +GN   C    + L 
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQ 125

Query: 844 KECENDEAPTNEDQVEGSEESLLSG 868
           +  E       E +++   +  L+ 
Sbjct: 126 RWEEEGLGGVPEQKLQCHGQGPLAH 150

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 19/146 (13%), Positives = 38/146 (26%), Gaps = 5/146 (3%)

Query: 488 TLDLSYNYLQG---PLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSG 544
            L  + +        LP     T+ Y+ +   L   +          L  L +  + L  
Sbjct: 12  GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQH-LELRDLRGLGELRNLTIVKSGLRF 70

Query: 545 LLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSS 604
           + P          S L+L  N       +T        ++   + L      R L     
Sbjct: 71  VAPDAFHFTPRL-SRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEE 129

Query: 605 LKFLDLGNNQISGTFPSWLGTLRELN 630
                +   ++       L  +   +
Sbjct: 130 EGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 23/164 (14%), Positives = 51/164 (31%), Gaps = 11/164 (6%)

Query: 310 FTRLYWLSLASNDFSG------ELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKF 363
              +        +  G      ++ A+   L++ + L +S         SSL  +  L+ 
Sbjct: 17  RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--ISSLSGMENLRI 74

Query: 364 LEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNE 423
           L    N      +LD      + L     S N+++  +      + +  ++         
Sbjct: 75  LSLGRNLIKKIENLDAVADTLEELWI---SYNQIASLSGIEKLVNLRVLYMSNNKITNWG 131

Query: 424 FPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSH 467
             + L     LE L L+ N ++    +       +      L +
Sbjct: 132 EIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPN 175

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	922
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.98
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.78
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.73
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.73
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.49
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.46
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.44
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.37
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.37
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.35
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.34
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.22
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.16
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.12
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.11
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.2
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.15
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.71
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.58
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.96
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.9

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1.2e-38  Score=343.93  Aligned_cols=295  Identities=32%  Similarity=0.496  Sum_probs=178.9

Q ss_pred             CCCHHHHHHHHHHhhcCCcCCCCCcccccCCCCCCCCCCCCCCCCCCCcc--ccceEecCCC--CcEEEEECCCCCCCCc
Q 002435           25 LCHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCL--WDGVECNENT--GHVIKLDLSNSCLQGF  100 (922)
Q Consensus        25 ~~~~~~~~all~~k~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~l~g~  100 (922)
                      .|.++||+||++||+++.++.             .+++|..   ++|||.  |+||+|+..+  +||++|+|+++++.|.
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-------------~l~sW~~---~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~   65 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-------------TLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP   65 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-------------GGTTCCT---TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSC
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-------------cCCCCCC---CCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCC
Confidence            599999999999999998753             5789987   789994  9999998643  4899999999999986


Q ss_pred             ccCccccccCCCCCeeeCCC-CCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCccccc
Q 002435          101 INSSSGLFKLVHLEWLDLAF-NYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELK  179 (922)
Q Consensus       101 ~~~~~~l~~l~~L~~L~Ls~-n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~  179 (922)
                      .+.+..++++++|++|+|++ |++.+. +|+.|+++++|++|+|++|++.+..+..+..+.+|+++++++|.+    .  
T Consensus        66 ~~lp~~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~----~--  138 (313)
T d1ogqa_          66 YPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL----S--  138 (313)
T ss_dssp             EECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE----E--
T ss_pred             CCCChHHhcCccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhcccccccccc----c--
Confidence            43334677777777777765 566554 677777777777777777777666666666677777777766652    1  


Q ss_pred             CCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCC-CEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccc
Q 002435          180 EPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSL-TLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTS  258 (922)
Q Consensus       180 ~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L-~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~  258 (922)
                       ..+|..+.+++.|+++++++|.+.+.+|..+..+..+ +.+++++|++++..|..+                       
T Consensus       139 -~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~-----------------------  194 (313)
T d1ogqa_         139 -GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF-----------------------  194 (313)
T ss_dssp             -SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG-----------------------
T ss_pred             -ccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccc-----------------------
Confidence             2334444455555555555555544444444444433 444445554444444444                       


Q ss_pred             cCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCc
Q 002435          259 IGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLE  338 (922)
Q Consensus       259 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  338 (922)
                       ..+..+ .++++++...+.+|..+..+++|+.+++++|.+.+.++ .+..+++|+.|++++|+++|.+|..++++++|+
T Consensus       195 -~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~  271 (313)
T d1ogqa_         195 -ANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH  271 (313)
T ss_dssp             -GGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCC
T ss_pred             -cccccc-cccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCC
Confidence             443322 34444444444444444444555555555554443322 344445555555555555555555555555555


Q ss_pred             eEecCCCccCccCchhhcCCCCccEEEccCCC
Q 002435          339 GLDISECKFSSQIPSSLRNLAQLKFLEFSHNN  370 (922)
Q Consensus       339 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~  370 (922)
                      +|+|++|+++|.+|+ ++.+++|+.+++++|+
T Consensus       272 ~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         272 SLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             EEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             EEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence            555555555554442 3445555555555554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.98  E-value=1.6e-32  Score=295.58  Aligned_cols=258  Identities=35%  Similarity=0.538  Sum_probs=213.3

Q ss_pred             ccceEEccCccCCC--CCCchhhhccCcccEEEcCC-CcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcE
Q 002435          531 SLEILDLSYNNLSG--LLPQCLDNFSDHLSILDLQH-NKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKF  607 (922)
Q Consensus       531 ~L~~L~Ls~N~l~~--~~p~~l~~l~~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  607 (922)
                      +++.|+|++|.++|  .+|..+++++ +|++|+|++ |+++|.+|..++++++|++|+|++|++.+..+..+..+..|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~-~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCc-cccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            46777777777776  3677777777 688888875 7777778888888888888888888888777777888888888


Q ss_pred             EECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCc-cEEEccCCcCCCCCChhhhhccccceecccc
Q 002435          608 LDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPEL-RIIDLSNNRFTGKLPSKYFQCWNAMQVVNTS  686 (922)
Q Consensus       608 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~  686 (922)
                      +++++|++.+.+|..+..++.|+++++++|++.+.+|...  ..+..+ +.+++++|+++|..|..+ ..          
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~--~~l~~l~~~l~~~~n~l~~~~~~~~-~~----------  196 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPTF-AN----------  196 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGGG-GG----------
T ss_pred             cccccccccccCchhhccCcccceeecccccccccccccc--ccccccccccccccccccccccccc-cc----------
Confidence            8888888888888888888888888888888887777654  344454 788888888887666431 10          


Q ss_pred             cccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCcccc
Q 002435          687 ELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLH  766 (922)
Q Consensus       687 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~  766 (922)
                                                                .....++++++.+.|.+|..++.+++++.+++++|.++
T Consensus       197 ------------------------------------------l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~  234 (313)
T d1ogqa_         197 ------------------------------------------LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA  234 (313)
T ss_dssp             ------------------------------------------CCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred             ------------------------------------------cccccccccccccccccccccccccccccccccccccc
Confidence                                                      11346889999999999999999999999999999999


Q ss_pred             ccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCCCCCCccccCCCcCCCCCCCCCCC
Q 002435          767 GHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLCGKPLPKEC  846 (922)
Q Consensus       767 ~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~~~~~~~~~~~s~~gn~~lcg~~~~~~c  846 (922)
                      +.+| .++.+++|+.|||++|+++|.+|+.+++|++|++|||++|+|+|.||+.+.+..+....+.||+.+||.|++ .|
T Consensus       235 ~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         235 FDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence            8876 589999999999999999999999999999999999999999999998888888888999999999999986 56

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.9e-25  Score=247.54  Aligned_cols=342  Identities=25%  Similarity=0.294  Sum_probs=165.1

Q ss_pred             CCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEE
Q 002435          213 NLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQL  292 (922)
Q Consensus       213 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  292 (922)
                      .+.+|++|+++++.++..  +.++.+++|++|++++|++++..  .++++++|++|++++|++.+..  .+..+++|+.|
T Consensus        42 ~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L  115 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGL  115 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEE
T ss_pred             HhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCc--cccCCccccccccccccccccc--ccccccccccc
Confidence            344566666666655532  34555666666666666665432  2666666666666666665432  25566666666


Q ss_pred             EccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCc
Q 002435          293 ELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFS  372 (922)
Q Consensus       293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  372 (922)
                      +++++.+++..+  ......+.......+.+....+.................     ....+...+.........|...
T Consensus       116 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  188 (384)
T d2omza2         116 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT-----DLKPLANLTTLERLDISSNKVS  188 (384)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC-----CCGGGTTCTTCCEEECCSSCCC
T ss_pred             cccccccccccc--ccccccccccccccccccccccccccccccccccccccc-----hhhhhccccccccccccccccc
Confidence            666666554332  233345555555555544322221111111111111111     1122333444444444444433


Q ss_pred             CccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCccc
Q 002435          373 GPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWL  452 (922)
Q Consensus       373 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~  452 (922)
                      ...    ....+++++.+++++|.++++.+  +...++|+.+++++|.++.++ .+..+++|+.|++++|++++..+  +
T Consensus       189 ~~~----~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~  259 (384)
T d2omza2         189 DIS----VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--L  259 (384)
T ss_dssp             CCG----GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred             ccc----ccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCCc--c
Confidence            111    11455666666666666665543  223455666666666665554 34556666666666666654332  1


Q ss_pred             cccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCcc
Q 002435          453 IEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSL  532 (922)
Q Consensus       453 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L  532 (922)
                      .  .+++|++|++++|.+.+..+                                                 +.. ++.+
T Consensus       260 ~--~~~~L~~L~l~~~~l~~~~~-------------------------------------------------~~~-~~~l  287 (384)
T d2omza2         260 S--GLTKLTELKLGANQISNISP-------------------------------------------------LAG-LTAL  287 (384)
T ss_dssp             T--TCTTCSEEECCSSCCCCCGG-------------------------------------------------GTT-CTTC
T ss_pred             c--ccccCCEeeccCcccCCCCc-------------------------------------------------ccc-cccc
Confidence            1  33444444444443322110                                                 111 3445


Q ss_pred             ceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCC
Q 002435          533 EILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGN  612 (922)
Q Consensus       533 ~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~  612 (922)
                      +.+++++|.+++.  ..+..+. +++.|++++|++++..+  +..+++|++|++++|++++. + .+.++++|++|++++
T Consensus       288 ~~l~~~~n~l~~~--~~~~~~~-~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l-~-~l~~l~~L~~L~l~~  360 (384)
T d2omza2         288 TNLELNENQLEDI--SPISNLK-NLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV-S-SLANLTNINWLSAGH  360 (384)
T ss_dssp             SEEECCSSCCSCC--GGGGGCT-TCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECCS
T ss_pred             ccccccccccccc--cccchhc-ccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCCC-h-hHcCCCCCCEEECCC
Confidence            5555555555432  2233333 45555555555554322  44555555555555555532 2 355555555555555


Q ss_pred             CcCccCcchhhcCCCCCCEEEcCCC
Q 002435          613 NQISGTFPSWLGTLRELNVLILKSN  637 (922)
Q Consensus       613 N~l~~~~p~~~~~l~~L~~L~L~~N  637 (922)
                      |++++..|  +.++++|++|+|++|
T Consensus       361 N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         361 NQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CcCCCChh--hccCCCCCEeeCCCC
Confidence            55554433  445555555555544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1e-25  Score=249.67  Aligned_cols=356  Identities=24%  Similarity=0.280  Sum_probs=232.6

Q ss_pred             ecCCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCC
Q 002435          341 DISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCN  420 (922)
Q Consensus       341 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~  420 (922)
                      .+..+.+++.+.  ...+.+|++|+++++.++. ++  . +..+++|++|++++|+++++++  +..+++|++|++++|.
T Consensus        28 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~-l~--g-l~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~   99 (384)
T d2omza2          28 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-ID--G-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ   99 (384)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECCSSCCCC-CT--T-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             HhCCCCCCCccC--HHHhCCCCEEECCCCCCCC-cc--c-cccCCCCCEEeCcCCcCCCCcc--ccCCcccccccccccc
Confidence            455555555432  2455677777777777763 22  1 2456777777777777777653  6667777777777777


Q ss_pred             CCCCcccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCC
Q 002435          421 LNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPL  500 (922)
Q Consensus       421 l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~  500 (922)
                      +..++. +..+++|+.|+++++.+++..+..    ....+.......|.+........                      
T Consensus       100 i~~i~~-l~~l~~L~~L~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~----------------------  152 (384)
T d2omza2         100 IADITP-LANLTNLTGLTLFNNQITDIDPLK----NLTNLNRLELSSNTISDISALSG----------------------  152 (384)
T ss_dssp             CCCCGG-GTTCTTCCEEECCSSCCCCCGGGT----TCTTCSEEEEEEEEECCCGGGTT----------------------
T ss_pred             cccccc-cccccccccccccccccccccccc----ccccccccccccccccccccccc----------------------
Confidence            766653 566677777777777666443322    23344444444444432221110                      


Q ss_pred             CCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCC
Q 002435          501 PVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRS  580 (922)
Q Consensus       501 ~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~  580 (922)
                          .............  .....+.. ...........|...  ....+..++ +++.+++++|.+++..|  +...++
T Consensus       153 ----~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~l~-~~~~l~l~~n~i~~~~~--~~~~~~  220 (384)
T d2omza2         153 ----LTSLQQLSFGNQV--TDLKPLAN-LTTLERLDISSNKVS--DISVLAKLT-NLESLIATNNQISDITP--LGILTN  220 (384)
T ss_dssp             ----CTTCSEEEEEESC--CCCGGGTT-CTTCCEEECCSSCCC--CCGGGGGCT-TCSEEECCSSCCCCCGG--GGGCTT
T ss_pred             ----ccccccccccccc--chhhhhcc-ccccccccccccccc--ccccccccc-ccceeeccCCccCCCCc--ccccCC
Confidence                0000000000000  00111111 333444455555443  234455555 68888888888886655  455678


Q ss_pred             ccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEc
Q 002435          581 LMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDL  660 (922)
Q Consensus       581 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdL  660 (922)
                      |++|++++|+++..  +.+..+++|+.|++++|++++..+  +..+++|++|++++|++.+..+    ...++.++.+++
T Consensus       221 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~----~~~~~~l~~l~~  292 (384)
T d2omza2         221 LDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP----LAGLTALTNLEL  292 (384)
T ss_dssp             CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEEC
T ss_pred             CCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCCc----cccccccccccc
Confidence            88888888888753  467788888888888888886544  7778888888888888876643    245678888888


Q ss_pred             cCCcCCCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEecccc
Q 002435          661 SNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNR  740 (922)
Q Consensus       661 s~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~  740 (922)
                      ++|.+++. +.  +.                                                   ..+.++.|++++|+
T Consensus       293 ~~n~l~~~-~~--~~---------------------------------------------------~~~~l~~L~ls~n~  318 (384)
T d2omza2         293 NENQLEDI-SP--IS---------------------------------------------------NLKNLTYLTLYFNN  318 (384)
T ss_dssp             CSSCCSCC-GG--GG---------------------------------------------------GCTTCSEEECCSSC
T ss_pred             cccccccc-cc--cc---------------------------------------------------hhcccCeEECCCCC
Confidence            88887641 10  00                                                   13457889999999


Q ss_pred             ccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCC
Q 002435          741 FDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNN  811 (922)
Q Consensus       741 l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N  811 (922)
                      +++..  .+..+++|+.|+|++|++++ +| .++++++|++|+|++|+|++.+|  +.++++|+.|++++|
T Consensus       319 l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         319 ISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            99764  38899999999999999986 33 69999999999999999998876  899999999999998

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=8.2e-23  Score=218.16  Aligned_cols=270  Identities=20%  Similarity=0.177  Sum_probs=150.1

Q ss_pred             CceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCC
Q 002435          486 GFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHN  565 (922)
Q Consensus       486 l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N  565 (922)
                      ...+|++++.++..++..++++++|++++|+++ .+|...+..+++|++|++++|.+....|..|.+++ .|++|++++|
T Consensus        12 ~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~-~L~~L~l~~n   89 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV-KLERLYLSKN   89 (305)
T ss_dssp             TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSS
T ss_pred             CCEEEecCCCCCccCCCCCCCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCC-ccCEecccCC
Confidence            456777777777555544556666666666665 33332222256666666666666655555565555 4666666666


Q ss_pred             cccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCc--cCcchhhcCCCCCCEEEcCCCcccccC
Q 002435          566 KFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQIS--GTFPSWLGTLRELNVLILKSNKLHGMI  643 (922)
Q Consensus       566 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~  643 (922)
                      +++.. |..+  ...++.|++++|.+.+..+..+.....++.++...|...  ...+..+..+++|+.+++++|.+... 
T Consensus        90 ~l~~l-~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l-  165 (305)
T d1xkua_          90 QLKEL-PEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-  165 (305)
T ss_dssp             CCSBC-CSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-
T ss_pred             ccCcC-ccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc-
Confidence            66532 3221  235566666666666555555555555666666555432  23344455566666666666655432 


Q ss_pred             CCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccc
Q 002435          644 REPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMS  723 (922)
Q Consensus       644 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  723 (922)
                      |.    ..+++|+.|++++|..++..+.. |..                                               
T Consensus       166 ~~----~~~~~L~~L~l~~n~~~~~~~~~-~~~-----------------------------------------------  193 (305)
T d1xkua_         166 PQ----GLPPSLTELHLDGNKITKVDAAS-LKG-----------------------------------------------  193 (305)
T ss_dssp             CS----SCCTTCSEEECTTSCCCEECTGG-GTT-----------------------------------------------
T ss_pred             Cc----ccCCccCEEECCCCcCCCCChhH-hhc-----------------------------------------------
Confidence            11    12355666666666554333321 110                                               


Q ss_pred             cccccccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCccc------c
Q 002435          724 YDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQ------L  797 (922)
Q Consensus       724 ~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~------l  797 (922)
                          ...++.|++++|.+++..|..+.++++|++|+|++|+|+ .+|++|.++++|+.|+|++|+|+......      +
T Consensus       194 ----~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~  268 (305)
T d1xkua_         194 ----LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN  268 (305)
T ss_dssp             ----CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCC
T ss_pred             ----cccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchh
Confidence                123556666666666666666666666666777666666 34566666666677777666666543222      2


Q ss_pred             cCCCCCCeEeccCCccc-cCCC
Q 002435          798 VDLTFLEFFNVSNNNLT-GPIP  818 (922)
Q Consensus       798 ~~L~~L~~L~ls~N~ls-g~iP  818 (922)
                      ..+..|+.|++++|++. +.+|
T Consensus       269 ~~~~~L~~L~L~~N~~~~~~~~  290 (305)
T d1xkua_         269 TKKASYSGVSLFSNPVQYWEIQ  290 (305)
T ss_dssp             TTSCCCSEEECCSSSSCGGGSC
T ss_pred             cccCCCCEEECCCCcCccCcCC
Confidence            34556666666666663 3444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=1.2e-22  Score=216.85  Aligned_cols=242  Identities=21%  Similarity=0.235  Sum_probs=164.0

Q ss_pred             hccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCccccccCCCCcc
Q 002435          382 VNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFS  461 (922)
Q Consensus       382 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~  461 (922)
                      .++++|++|++++|.+..+.+..|..++.|+.|++++|+++.+|...  ...++.|++++|.+.+..+..+.  ......
T Consensus        52 ~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~--~~~~~~  127 (305)
T d1xkua_          52 KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFN--GLNQMI  127 (305)
T ss_dssp             TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHT--TCTTCC
T ss_pred             hccccccccccccccccccchhhhhCCCccCEecccCCccCcCccch--hhhhhhhhccccchhhhhhhhhh--cccccc
Confidence            34444444444444444444444555555555555555555555432  34566777777776644333332  334444


Q ss_pred             EEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCcc
Q 002435          462 YLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNN  541 (922)
Q Consensus       462 ~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~  541 (922)
                      .++...|.....                                             +..+..+.. +++|+.+++++|.
T Consensus       128 ~l~~~~n~~~~~---------------------------------------------~~~~~~~~~-l~~L~~l~l~~n~  161 (305)
T d1xkua_         128 VVELGTNPLKSS---------------------------------------------GIENGAFQG-MKKLSYIRIADTN  161 (305)
T ss_dssp             EEECCSSCCCGG---------------------------------------------GBCTTGGGG-CTTCCEEECCSSC
T ss_pred             cccccccccccc---------------------------------------------CCCcccccc-ccccCccccccCC
Confidence            444444432111                                             111222222 6788899999998


Q ss_pred             CCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcch
Q 002435          542 LSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPS  621 (922)
Q Consensus       542 l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~  621 (922)
                      ++. +|..+   .++|+.|++++|.+++..+..|..++.+++|++++|++++..+..+.++++|++|+|++|+|+. +|.
T Consensus       162 l~~-l~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~-lp~  236 (305)
T d1xkua_         162 ITT-IPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPG  236 (305)
T ss_dssp             CCS-CCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCT
T ss_pred             ccc-cCccc---CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccc-ccc
Confidence            874 44433   2379999999999998888899999999999999999998888999999999999999999984 578


Q ss_pred             hhcCCCCCCEEEcCCCcccccCCCCC----CCCCCCCccEEEccCCcCC-CCCChhhhhccc
Q 002435          622 WLGTLRELNVLILKSNKLHGMIREPN----TGCGFPELRIIDLSNNRFT-GKLPSKYFQCWN  678 (922)
Q Consensus       622 ~~~~l~~L~~L~L~~N~l~~~~~~~~----~~~~l~~L~~LdLs~N~l~-g~ip~~~~~~~~  678 (922)
                      +|..+++|++|+|++|+|+.+....+    .....++|+.|+|++|++. ..++...|.++.
T Consensus       237 ~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~  298 (305)
T d1xkua_         237 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY  298 (305)
T ss_dssp             TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCC
T ss_pred             ccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcccc
Confidence            89999999999999999987644332    1245688999999999985 467777666543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.3e-23  Score=217.71  Aligned_cols=227  Identities=22%  Similarity=0.243  Sum_probs=183.7

Q ss_pred             eEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECC-C
Q 002435          534 ILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLG-N  612 (922)
Q Consensus       534 ~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls-~  612 (922)
                      .++.++++++ .+|..+   ++++++|+|++|+|++..+..|.++++|++|++++|++....+..+..++.++.++.. .
T Consensus        15 ~v~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCCC-ccCCCC---CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            3455666666 456543   3368888888888887777778888888888888888888888888888888888765 5


Q ss_pred             CcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccccccc
Q 002435          613 NQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYME  692 (922)
Q Consensus       613 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~  692 (922)
                      |.++...|..|+++++|++|++++|.+....+...  ...++|+.+++++|.++ .+|...|..                
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~~~L~~l~l~~N~l~-~i~~~~f~~----------------  151 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--RGLAALQYLYLQDNALQ-ALPDDTFRD----------------  151 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCC-CCCTTTTTT----------------
T ss_pred             cccccccchhhcccccCCEEecCCccccccccccc--chhcccchhhhcccccc-ccChhHhcc----------------
Confidence            66777778888888888888888888876654443  55788899999999887 344333321                


Q ss_pred             cccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCcc
Q 002435          693 GMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSC  772 (922)
Q Consensus       693 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~  772 (922)
                                                         ...++.|++++|++++..|..|.++++|+.+++++|++++..|..
T Consensus       152 -----------------------------------~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~  196 (284)
T d1ozna_         152 -----------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA  196 (284)
T ss_dssp             -----------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             -----------------------------------ccchhhcccccCcccccchhhhccccccchhhhhhccccccChhH
Confidence                                               235788999999999888899999999999999999999999999


Q ss_pred             ccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCC
Q 002435          773 LGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIP  818 (922)
Q Consensus       773 l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP  818 (922)
                      |+++++|++||+++|++++.+|..++++++|++|++++|++.+..+
T Consensus       197 f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             hhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            9999999999999999999999999999999999999999987655

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.9e-23  Score=219.06  Aligned_cols=232  Identities=19%  Similarity=0.159  Sum_probs=170.7

Q ss_pred             EEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccC
Q 002435          414 VGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSY  493 (922)
Q Consensus       414 L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~  493 (922)
                      +..++++++++|..+.  +.+++|+|++|+|+...+..+.  .+++|++|++++|.+..+....+.              
T Consensus        16 v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~--~l~~L~~L~ls~n~l~~i~~~~~~--------------   77 (284)
T d1ozna_          16 TSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFR--ACRNLTILWLHSNVLARIDAAAFT--------------   77 (284)
T ss_dssp             EECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTT--------------
T ss_pred             EEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhh--cccccccccccccccccccccccc--------------
Confidence            3445555556665432  4566777777776644444444  566666666666666554332221              


Q ss_pred             ccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcc
Q 002435          494 NYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQ  573 (922)
Q Consensus       494 n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~  573 (922)
                               ....+..+....+.....++...+..+++|++|++++|.+....+..+.... +|+.+++++|+++++.+.
T Consensus        78 ---------~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~l~l~~N~l~~i~~~  147 (284)
T d1ozna_          78 ---------GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA-ALQYLYLQDNALQALPDD  147 (284)
T ss_dssp             ---------TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTT
T ss_pred             ---------ccccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhc-ccchhhhccccccccChh
Confidence                     1223344444333222234333344488999999999999877776776666 799999999999988888


Q ss_pred             cccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCC
Q 002435          574 TFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFP  653 (922)
Q Consensus       574 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~  653 (922)
                      .|..+++|+.|++++|++++..+..|.++++|+.+++++|++++..|.+|..+++|++|++++|++.+..+..+  ..++
T Consensus       148 ~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~--~~~~  225 (284)
T d1ozna_         148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL--APLR  225 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHH--TTCT
T ss_pred             HhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccccc--cccc
Confidence            89999999999999999998888999999999999999999999999999999999999999999988766544  5688


Q ss_pred             CccEEEccCCcCCCCCChhhhh
Q 002435          654 ELRIIDLSNNRFTGKLPSKYFQ  675 (922)
Q Consensus       654 ~L~~LdLs~N~l~g~ip~~~~~  675 (922)
                      +|+.|++++|++.|.++..++.
T Consensus       226 ~L~~L~l~~N~l~C~C~~~~l~  247 (284)
T d1ozna_         226 ALQYLRLNDNPWVCDCRARPLW  247 (284)
T ss_dssp             TCCEEECCSSCEECSGGGHHHH
T ss_pred             ccCEEEecCCCCCCCccchHHH
Confidence            9999999999999988766543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.5e-21  Score=200.58  Aligned_cols=86  Identities=27%  Similarity=0.300  Sum_probs=68.8

Q ss_pred             ccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEec
Q 002435          729 NFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNV  808 (922)
Q Consensus       729 ~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~l  808 (922)
                      ..+..|++++|.+++..+..+..++.|+.|++++|++++.++..|+.+++|++|||++|+|+ .+|..+..+++|+.|++
T Consensus       124 ~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L  202 (266)
T d1p9ag_         124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL  202 (266)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEEC
T ss_pred             cccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEe
Confidence            34566777777777666666777888888888888888888888888888888888888888 67877888888888888


Q ss_pred             cCCcccc
Q 002435          809 SNNNLTG  815 (922)
Q Consensus       809 s~N~lsg  815 (922)
                      ++|++..
T Consensus       203 ~~Np~~C  209 (266)
T d1p9ag_         203 HGNPWLC  209 (266)
T ss_dssp             CSCCBCC
T ss_pred             cCCCCCC
Confidence            8887764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.7e-21  Score=199.59  Aligned_cols=211  Identities=25%  Similarity=0.252  Sum_probs=167.8

Q ss_pred             CCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCc
Q 002435          408 SQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGF  487 (922)
Q Consensus       408 ~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~  487 (922)
                      ...+..++.++++++.+|..+.  +++++|+|++|+|++..+..+.  .+++|++|+|++|.++.+...           
T Consensus         9 ~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~--~l~~L~~L~L~~N~l~~l~~~-----------   73 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLM--PYTRLTQLNLDRAELTKLQVD-----------   73 (266)
T ss_dssp             STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGT--TCTTCCEEECTTSCCCEEECC-----------
T ss_pred             cCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhh--ccccccccccccccccccccc-----------
Confidence            3445556777777777776543  5688888888888765555555  677888888877776533210           


Q ss_pred             eEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcc
Q 002435          488 TLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKF  567 (922)
Q Consensus       488 ~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l  567 (922)
                                                            . .+++|++|++++|++++ .+..+..++ +|+.|++++|.+
T Consensus        74 --------------------------------------~-~l~~L~~L~Ls~N~l~~-~~~~~~~l~-~L~~L~l~~~~~  112 (266)
T d1p9ag_          74 --------------------------------------G-TLPVLGTLDLSHNQLQS-LPLLGQTLP-ALTVLDVSFNRL  112 (266)
T ss_dssp             --------------------------------------S-CCTTCCEEECCSSCCSS-CCCCTTTCT-TCCEEECCSSCC
T ss_pred             --------------------------------------c-ccccccccccccccccc-ccccccccc-cccccccccccc
Confidence                                                  0 16678889999998875 456677777 799999999999


Q ss_pred             cCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCC
Q 002435          568 CGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPN  647 (922)
Q Consensus       568 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~  647 (922)
                      .+..+..+..+.++++|++++|.++...+..+..+++|+.|++++|++++..+..|..+++|++|+|++|+|+ .+|...
T Consensus       113 ~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~  191 (266)
T d1p9ag_         113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF  191 (266)
T ss_dssp             CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred             ceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhH
Confidence            8888888889999999999999999888888999999999999999999988899999999999999999998 455544


Q ss_pred             CCCCCCCccEEEccCCcCCCCCChhhhhcc
Q 002435          648 TGCGFPELRIIDLSNNRFTGKLPSKYFQCW  677 (922)
Q Consensus       648 ~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~  677 (922)
                        ..+++|+.|+|++|++.|.+...+|..|
T Consensus       192 --~~~~~L~~L~L~~Np~~CdC~~~~l~~w  219 (266)
T d1p9ag_         192 --FGSHLLPFAFLHGNPWLCNCEILYFRRW  219 (266)
T ss_dssp             --TTTCCCSEEECCSCCBCCSGGGHHHHHH
T ss_pred             --CCCCCCCEEEecCCCCCCCcchHHHHHH
Confidence              5689999999999999998877666554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.78  E-value=1e-16  Score=173.94  Aligned_cols=95  Identities=20%  Similarity=0.402  Sum_probs=42.0

Q ss_pred             CCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEE
Q 002435          336 SLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVG  415 (922)
Q Consensus       336 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~  415 (922)
                      ++++|+|+++.++ .+|+.   +++|++|++++|+++ .+|.     .+.+|+.|++++|+++.+..    -.+.|++|+
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~-----~~~~L~~L~l~~n~l~~l~~----lp~~L~~L~  104 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPE-----LPQSLKSLLVDNNNLKALSD----LPPLLEYLG  104 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCC-----CCTTCCEEECCSSCCSCCCS----CCTTCCEEE
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-cccc-----chhhhhhhhhhhcccchhhh----hcccccccc
Confidence            3444555554444 23321   234445555555444 2331     12344555555554443321    112344555


Q ss_pred             ecCCCCCCCcccccCCCCccEEECcCCCCC
Q 002435          416 LRSCNLNEFPNFLKNQHYLEVLDLSCNKIH  445 (922)
Q Consensus       416 L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~  445 (922)
                      +++|.++.+|. ...+++|+.|++++|.+.
T Consensus       105 L~~n~l~~lp~-~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         105 VSNNQLEKLPE-LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CCSSCCSSCCC-CTTCTTCCEEECCSSCCS
T ss_pred             ccccccccccc-hhhhccceeecccccccc
Confidence            55555544443 244555555555555443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=3.3e-16  Score=169.91  Aligned_cols=138  Identities=27%  Similarity=0.288  Sum_probs=77.7

Q ss_pred             CCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEc
Q 002435          215 SSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLEL  294 (922)
Q Consensus       215 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  294 (922)
                      .++++|+|+++.++ .+|+.   .++|++|++++|+++ .+|+.   ..+|+.|++++|+++ .++. +  .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD-L--PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS-C--CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh-h--ccccccccc
Confidence            36778888888776 45643   457778888888777 45544   346777777777766 2222 1  134677777


Q ss_pred             cCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCc
Q 002435          295 SLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFS  372 (922)
Q Consensus       295 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  372 (922)
                      ++|.+... |. ++.+++|+.|+++++.+... +.   ....+..+.+..+....  ...+..++.++.+++++|...
T Consensus       106 ~~n~l~~l-p~-~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         106 SNNQLEKL-PE-LQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             CSSCCSSC-CC-CTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCS
T ss_pred             cccccccc-cc-hhhhccceeecccccccccc-cc---ccccccchhhccccccc--cccccccccceeccccccccc
Confidence            77766532 32 45566666666666655422 11   12344555554444332  223444455555555555443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1.4e-17  Score=168.63  Aligned_cols=207  Identities=20%  Similarity=0.253  Sum_probs=155.1

Q ss_pred             ccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEEC
Q 002435          531 SLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDL  610 (922)
Q Consensus       531 ~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  610 (922)
                      ++..++++.+.+++..  .+.++. +|+.|++.+|.|+.. + .+..+++|++|++++|++++..|  +..+++|+++++
T Consensus        20 ~~~~~~l~~~~~~d~~--~~~~l~-~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~   92 (227)
T d1h6ua2          20 NAIKIAAGKSNVTDTV--TQADLD-GITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELEL   92 (227)
T ss_dssp             HHHHHHTTCSSTTSEE--CHHHHH-TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEEC
T ss_pred             HHHHHHhCCCCcCCcC--CHHHcC-CcCEEECCCCCCCcc-h-hHhcCCCCcEeecCCceeecccc--cccccccccccc
Confidence            3445667777777653  345565 688888888888754 3 47788888888888888876543  788888888888


Q ss_pred             CCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccccc
Q 002435          611 GNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRY  690 (922)
Q Consensus       611 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~  690 (922)
                      ++|.++..  ..+..+++|+.+++++|...+..+.    ...+.++.++++++.+....+.   .               
T Consensus        93 ~~n~~~~i--~~l~~l~~L~~l~l~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~---~---------------  148 (227)
T d1h6ua2          93 SGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPL----AGLSNLQVLYLDLNQITNISPL---A---------------  148 (227)
T ss_dssp             CSCCCSCC--GGGTTCTTCCEEECTTSCCCCCGGG----TTCTTCCEEECCSSCCCCCGGG---G---------------
T ss_pred             cccccccc--ccccccccccccccccccccccchh----ccccchhhhhchhhhhchhhhh---c---------------
Confidence            88888743  3577888888888888877665322    3456777888877766532110   0               


Q ss_pred             cccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccccccCC
Q 002435          691 MEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHIL  770 (922)
Q Consensus       691 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip  770 (922)
                                                          ..+.++.|++++|.+++..  .++++++|+.|||++|++++. |
T Consensus       149 ------------------------------------~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l-~  189 (227)
T d1h6ua2         149 ------------------------------------GLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI-S  189 (227)
T ss_dssp             ------------------------------------GCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G
T ss_pred             ------------------------------------cccccccccccccccccch--hhcccccceecccCCCccCCC-h
Confidence                                                0345888999999988543  388999999999999999874 3


Q ss_pred             ccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccC
Q 002435          771 SCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSN  810 (922)
Q Consensus       771 ~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~  810 (922)
                       .++++++|++|+|++|+|++..|  +++++.|++|++++
T Consensus       190 -~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         190 -PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             -GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             -hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence             38999999999999999997654  89999999999974

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.5e-19  Score=204.38  Aligned_cols=60  Identities=18%  Similarity=0.219  Sum_probs=26.9

Q ss_pred             CCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCC----cCchhhcCCCCCCEEEcCCCC
Q 002435          112 HLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFG----QIPSEILELSNLVSLDLSHNS  171 (922)
Q Consensus       112 ~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~  171 (922)
                      +|++||++++++++..+.+-+..++++++|+|++|.++.    .++..+..+++|++|||++|.
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~   66 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE   66 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCc
Confidence            345555555555433233334444555555555554432    122333444444444444444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.9e-19  Score=203.51  Aligned_cols=110  Identities=24%  Similarity=0.277  Sum_probs=63.0

Q ss_pred             CCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCC----CchhccCCCCCCEEeccCccCCcc----Cc
Q 002435          161 NLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSP----IPHSLANLSSLTLLSLSGCELRGR----IP  232 (922)
Q Consensus       161 ~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~  232 (922)
                      +|++||+++|++++      ..+...+..+++++.|+|++|.++..    +...+..+++|++|+|++|.++..    +.
T Consensus         3 ~l~~ld~~~~~i~~------~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~   76 (460)
T d1z7xw1           3 DIQSLDIQCEELSD------ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL   76 (460)
T ss_dssp             EEEEEEEESCCCCH------HHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH
T ss_pred             CCCEEEeeCCcCCh------HHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHH
Confidence            57888888887532      23445566677777777777776532    234455667777777777766421    11


Q ss_pred             cccC-CCCCCCEEeCcCCCCCCC----cccccCCCCCCcEEEcccCCCC
Q 002435          233 SLLG-NLTKLMYLDLSFNNLLGE----LPTSIGNLDCLKRLDISWNELS  276 (922)
Q Consensus       233 ~~l~-~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~  276 (922)
                      ..+. ...+|++|+|++|++++.    ++..+..+++|++|++++|.++
T Consensus        77 ~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          77 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             HHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            2221 223566666666665532    2334555556666666665554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.3e-17  Score=170.86  Aligned_cols=222  Identities=14%  Similarity=0.073  Sum_probs=154.9

Q ss_pred             ceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCccccc-CCccccCCCCCcEEECC
Q 002435          533 EILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGR-IPRSLVNCSSLKFLDLG  611 (922)
Q Consensus       533 ~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~Ls  611 (922)
                      +.++.++..++ .+|..+   +.++++|++++|+|+...+..|.++++|++|++++|.+... .+..|.+++.++++++.
T Consensus        11 ~~i~c~~~~l~-~iP~~l---~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCS---CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCC---CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            56777777776 556544   23688888888888766666788888888888888887654 34567888888888775


Q ss_pred             C-CcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccccc
Q 002435          612 N-NQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRY  690 (922)
Q Consensus       612 ~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~  690 (922)
                      . |++....+..|.++++|+++++++|++....+.. ....++.+..+..+++.+. .++...|                
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~-~~~~l~~l~~~~~~n~~l~-~i~~~~~----------------  148 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH-KIHSLQKVLLDIQDNINIH-TIERNSF----------------  148 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCT-TTCBSSCEEEEEESCTTCC-EECTTSS----------------
T ss_pred             ccccccccccccccccccccccccchhhhccccccc-ccccccccccccccccccc-ccccccc----------------
Confidence            4 6777777777888888888888888876543222 1233455555555555543 2221111                


Q ss_pred             cccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCC-EEeCCCccccccC
Q 002435          691 MEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQ-VLSLANNSLHGHI  769 (922)
Q Consensus       691 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~-~L~Ls~N~l~~~i  769 (922)
                                                        ......+..|++++|+++...+..+. ..+++ .+++++|+++...
T Consensus       149 ----------------------------------~~~~~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~  193 (242)
T d1xwdc1         149 ----------------------------------VGLSFESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNNLEELP  193 (242)
T ss_dssp             ----------------------------------TTSBSSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTTCCCCC
T ss_pred             ----------------------------------ccccccceeeeccccccccccccccc-chhhhcccccccccccccc
Confidence                                              11124577889999999965554444 44544 4467888899776


Q ss_pred             CccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCC
Q 002435          770 LSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNN  811 (922)
Q Consensus       770 p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N  811 (922)
                      +..|.++++|++|||++|+|+...+..|.+++.|+++++.+.
T Consensus       194 ~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         194 NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL  235 (242)
T ss_dssp             TTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEESS
T ss_pred             HHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCCC
Confidence            778999999999999999999877778899998888877543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=1.6e-16  Score=160.67  Aligned_cols=204  Identities=24%  Similarity=0.301  Sum_probs=110.7

Q ss_pred             EEEECCCCCCCCcccCccccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEc
Q 002435           88 IKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDL  167 (922)
Q Consensus        88 ~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  167 (922)
                      +.++++.+.+++.+    .+..+.+|+.|++.+|.+..  + +.+..+++|++|++++|.+.+..|  +.++++|+++++
T Consensus        22 ~~~~l~~~~~~d~~----~~~~l~~L~~L~l~~~~i~~--l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~   92 (227)
T d1h6ua2          22 IKIAAGKSNVTDTV----TQADLDGITTLSAFGTGVTT--I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELEL   92 (227)
T ss_dssp             HHHHTTCSSTTSEE----CHHHHHTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEEC
T ss_pred             HHHHhCCCCcCCcC----CHHHcCCcCEEECCCCCCCc--c-hhHhcCCCCcEeecCCceeecccc--cccccccccccc
Confidence            34455555555542    44566777777777777642  4 346777777777777777754332  667777777777


Q ss_pred             CCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCc
Q 002435          168 SHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLS  247 (922)
Q Consensus       168 s~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  247 (922)
                      ++|.++.+.         .+.++++|+.+.++++...+.  ..+...+.++.+.++++.+...  ..+..+++|++|+++
T Consensus        93 ~~n~~~~i~---------~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~  159 (227)
T d1h6ua2          93 SGNPLKNVS---------AIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIG  159 (227)
T ss_dssp             CSCCCSCCG---------GGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECC
T ss_pred             ccccccccc---------ccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhcccccccccccc
Confidence            777643221         244556666666665555442  2244455555555555555432  224445555555555


Q ss_pred             CCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEee
Q 002435          248 FNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLA  319 (922)
Q Consensus       248 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  319 (922)
                      +|.+.+..  .++++++|++|++++|++++ ++ .+.++++|++|++++|++++..  .++++++|+.|+++
T Consensus       160 ~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         160 NAQVSDLT--PLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             SSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             ccccccch--hhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence            55554322  24555555555555555543 22 2445555555555555554322  14444555555444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=1.6e-17  Score=163.02  Aligned_cols=137  Identities=23%  Similarity=0.268  Sum_probs=116.7

Q ss_pred             cceEEccCccCCCCCCchhhhccCcccEEEcCCCcccC-CCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEEC
Q 002435          532 LEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCG-SIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDL  610 (922)
Q Consensus       532 L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  610 (922)
                      .+.++.++++++ .+|..+   +.++++|+|++|+|++ ..+..|..+++|+.|+|++|++.+..+..|..+++|++|+|
T Consensus        10 ~~~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            467888888888 567654   3479999999999976 44667888999999999999999999999999999999999


Q ss_pred             CCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhh
Q 002435          611 GNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYF  674 (922)
Q Consensus       611 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~  674 (922)
                      ++|+|++..|.+|.++++|++|+|++|+|+++.+..+  ..+++|++|+|++|++.+.++..++
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f--~~l~~L~~l~L~~N~~~~~~~~~~~  147 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCHLAWF  147 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGGGHHH
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHh--cCCcccccccccccccccccchHHH
Confidence            9999998888999999999999999999998876655  6789999999999999887765554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=1.6e-17  Score=163.10  Aligned_cols=176  Identities=23%  Similarity=0.270  Sum_probs=112.7

Q ss_pred             ceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCc
Q 002435          487 FTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNK  566 (922)
Q Consensus       487 ~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~  566 (922)
                      .+++++++.++..+...++++++|++++|.+++.++...+..+++|+.|++++|++.+..+..+..++ +|++|+|++|+
T Consensus        11 ~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~-~L~~L~Ls~N~   89 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS-HIQELQLGENK   89 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSCC
T ss_pred             CEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccc-ccceeeecccc
Confidence            46677777777655555667777777777776666555555567777777777777766666666666 57777777777


Q ss_pred             ccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcc-hhhcCCCCCCEEEcCCCcccccCCC
Q 002435          567 FCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFP-SWLGTLRELNVLILKSNKLHGMIRE  645 (922)
Q Consensus       567 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~  645 (922)
                      |++..+..|.++++|++|+|++|+|+++.++.|..+++|++|+|++|.+....+ .++.  ..++.+.+..|.+....|.
T Consensus        90 l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~~p~  167 (192)
T d1w8aa_          90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSST
T ss_pred             ccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeCCCh
Confidence            776666677777777777777777776666777777777777777777664322 2221  1234445555655554443


Q ss_pred             CCCCCCCCCccEEEccCCcCCCCCC
Q 002435          646 PNTGCGFPELRIIDLSNNRFTGKLP  670 (922)
Q Consensus       646 ~~~~~~l~~L~~LdLs~N~l~g~ip  670 (922)
                      .     +..++.+||+.|.|.|.-+
T Consensus       168 ~-----l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         168 K-----VRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             T-----TTTSBGGGSCTTTCCCCCC
T ss_pred             h-----hcCCEeeecCHhhCcCCCC
Confidence            2     3455666777777765443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=2.1e-16  Score=157.31  Aligned_cols=76  Identities=29%  Similarity=0.404  Sum_probs=58.9

Q ss_pred             ccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEec
Q 002435          729 NFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNV  808 (922)
Q Consensus       729 ~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~l  808 (922)
                      +.++.+++++|.+++.  ..+..+++|+.+++++|++++..  .++++++|+.|+|++|+|+. +| .+++|++|++|++
T Consensus       134 ~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L  207 (210)
T d1h6ta2         134 PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLEL  207 (210)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEE
T ss_pred             cccccccccccccccc--ccccccccccccccccccccccc--cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEc
Confidence            3466677777777642  34667888999999999998643  38889999999999999985 44 5889999999998


Q ss_pred             cC
Q 002435          809 SN  810 (922)
Q Consensus       809 s~  810 (922)
                      ++
T Consensus       208 s~  209 (210)
T d1h6ta2         208 FS  209 (210)
T ss_dssp             EE
T ss_pred             cC
Confidence            74

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.1e-15  Score=152.00  Aligned_cols=164  Identities=28%  Similarity=0.314  Sum_probs=75.9

Q ss_pred             cCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHh
Q 002435          109 KLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVK  188 (922)
Q Consensus       109 ~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~  188 (922)
                      .+..|++|++++|.+..  + ..+..+++|++|++++|.+++ ++ .++.+++|++|++++|+++.+        + .+.
T Consensus        44 ~L~~L~~L~l~~~~i~~--l-~~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~l--------~-~l~  109 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKS--V-QGIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKDL--------S-SLK  109 (210)
T ss_dssp             HHHTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCG--------G-GGT
T ss_pred             HhcCccEEECcCCCCCC--c-hhHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccccc--------c-ccc
Confidence            45566666666666542  2 235566666666666666643 22 245566666666666654221        1 234


Q ss_pred             cCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEE
Q 002435          189 KLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRL  268 (922)
Q Consensus       189 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  268 (922)
                      .+++|+.|++++|.+..  ...+..++.++.+++++|.+.+.  ..+..+++|+++++++|++++..  .+.++++|++|
T Consensus       110 ~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L  183 (210)
T d1h6ta2         110 DLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNL  183 (210)
T ss_dssp             TCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEE
T ss_pred             ccccccccccccccccc--ccccccccccccccccccccccc--ccccccccccccccccccccccc--cccCCCCCCEE
Confidence            44444444444444432  12344444444444444444321  22333444444444444443221  13444444444


Q ss_pred             EcccCCCCCCchhhhhCCCCCCEEEc
Q 002435          269 DISWNELSGELPASIGNLASLEQLEL  294 (922)
Q Consensus       269 ~L~~n~l~~~~~~~l~~l~~L~~L~L  294 (922)
                      ++++|+++. ++ .+.++++|++|+|
T Consensus       184 ~Ls~N~i~~-l~-~l~~l~~L~~L~L  207 (210)
T d1h6ta2         184 YLSKNHISD-LR-ALAGLKNLDVLEL  207 (210)
T ss_dssp             ECCSSCCCB-CG-GGTTCTTCSEEEE
T ss_pred             ECCCCCCCC-Ch-hhcCCCCCCEEEc
Confidence            444444432 22 2344444444443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=2.3e-15  Score=148.39  Aligned_cols=149  Identities=30%  Similarity=0.339  Sum_probs=74.2

Q ss_pred             ccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHH
Q 002435          108 FKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLV  187 (922)
Q Consensus       108 ~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~  187 (922)
                      ..+.++++|++++|.+..  + +.+..+++|++|++++|.+++. ++ ++++++|++|++++|.+..+        + .+
T Consensus        37 ~~l~~l~~L~l~~~~i~~--l-~~l~~l~nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~~~~~--------~-~l  102 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKS--I-DGVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADI--------T-PL  102 (199)
T ss_dssp             HHHTTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--------G-GG
T ss_pred             HHhcCCCEEECCCCCCCC--c-cccccCCCcCcCccccccccCc-cc-ccCCcccccccccccccccc--------c-cc
Confidence            445666777777766642  2 2456666677777776666443 22 66666666666666653221        1 13


Q ss_pred             hcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcE
Q 002435          188 KKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKR  267 (922)
Q Consensus       188 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  267 (922)
                      .++++|++|+++++.+...  ..+..+++|+.|++++|++.. + +.+..+++|++|++++|++++.  +.++++++|++
T Consensus       103 ~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~  176 (199)
T d2omxa2         103 ANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLER  176 (199)
T ss_dssp             TTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCE
T ss_pred             ccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC--ccccCCCCCCE
Confidence            4445555555544444331  224444445555554444432 1 2344444444444444444432  12444444444


Q ss_pred             EEcccCCCC
Q 002435          268 LDISWNELS  276 (922)
Q Consensus       268 L~L~~n~l~  276 (922)
                      |++++|+++
T Consensus       177 L~ls~N~i~  185 (199)
T d2omxa2         177 LDISSNKVS  185 (199)
T ss_dssp             EECCSSCCC
T ss_pred             EECCCCCCC
Confidence            444444444

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=9.8e-16  Score=156.53  Aligned_cols=195  Identities=18%  Similarity=0.128  Sum_probs=99.9

Q ss_pred             CCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCc-ccccCCCCCCcEEEccc-CCCCCCchhhhhCCCCCCEE
Q 002435          215 SSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGEL-PTSIGNLDCLKRLDISW-NELSGELPASIGNLASLEQL  292 (922)
Q Consensus       215 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L  292 (922)
                      +++++|++++|.++...+..|.++++|++|++++|.+...+ +.+|.++++++++.+.. |.+....+..+..+++|+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            35666677766666444445666667777777666665433 33556666666666543 45554555556666666776


Q ss_pred             EccCCCCCCCCcc-cccCCCCCcEEEeeccCCCCcccccccCCC-CCceEecCCCccCccCchhhcCCCCccEE-EccCC
Q 002435          293 ELSLNRFRGKTPH-SMGNFTRLYWLSLASNDFSGELPASFGNLR-SLEGLDISECKFSSQIPSSLRNLAQLKFL-EFSHN  369 (922)
Q Consensus       293 ~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L-~L~~n  369 (922)
                      ++++|.+....+. .+..+..+..+...++.+....+..+..++ .++.|++++|+++...+. .....+++++ ++++|
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~-~~~~~~l~~~~~l~~n  187 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNC-AFNGTQLDELNLSDNN  187 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTT-TTTTCCEEEEECTTCT
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccc-cccchhhhcccccccc
Confidence            6666666543221 223344444444444444433334444433 555566666665533222 2223333333 33444


Q ss_pred             CCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCcc
Q 002435          370 NFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFN  412 (922)
Q Consensus       370 ~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~  412 (922)
                      +++ .++...| .++++|++|++++|+++.++...|..+++|+
T Consensus       188 ~l~-~l~~~~f-~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~  228 (242)
T d1xwdc1         188 NLE-ELPNDVF-HGASGPVILDISRTRIHSLPSYGLENLKKLR  228 (242)
T ss_dssp             TCC-CCCTTTT-TTSCCCSEEECTTSCCCCCCSSSCTTCCEEE
T ss_pred             ccc-cccHHHh-cCCCCCCEEECCCCcCCccCHHHHcCCcccc
Confidence            444 3333333 4455555555555555554444444433333

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=1.1e-14  Score=143.40  Aligned_cols=127  Identities=31%  Similarity=0.393  Sum_probs=50.9

Q ss_pred             cCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCE
Q 002435          212 ANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQ  291 (922)
Q Consensus       212 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  291 (922)
                      ..+++|++|++++|++++..  .++++++|++|++++|.+... + .+.++++|+.|++++|.+...  ..+..+++|+.
T Consensus        59 ~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~  132 (199)
T d2omxa2          59 EYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNR  132 (199)
T ss_dssp             GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred             ccCCCcCcCccccccccCcc--cccCCcccccccccccccccc-c-ccccccccccccccccccccc--cccchhhhhHH
Confidence            33444444444444443221  134444444444444443321 1 234444444444444444321  12334444444


Q ss_pred             EEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccC
Q 002435          292 LELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFS  348 (922)
Q Consensus       292 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  348 (922)
                      |++++|++...  ..+..+++|+.|++.+|.+++. + .++++++|++|++++|+++
T Consensus       133 L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         133 LELSSNTISDI--SALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred             hhhhhhhhccc--ccccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCC
Confidence            44444444321  1233444444444444444321 1 1344444444444444444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=9.2e-16  Score=160.30  Aligned_cols=185  Identities=25%  Similarity=0.296  Sum_probs=104.6

Q ss_pred             ccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHH
Q 002435          108 FKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLV  187 (922)
Q Consensus       108 ~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~  187 (922)
                      .....|++||++++.+....++..+..+++|++|+|++|.+.+..+..++++++|++|++++|.     .+++..+....
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~-----~itd~~l~~l~  117 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS-----GFSEFALQTLL  117 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCB-----SCCHHHHHHHH
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccc-----cccccccchhh
Confidence            3445677777777766544344556677777777777777766666677777777777777753     12223344445


Q ss_pred             hcCCCCCEEEcCCCc-CCCC-Cchhcc-CCCCCCEEeccCcc--CCcc-CccccCCCCCCCEEeCcCC-CCCCCcccccC
Q 002435          188 KKLTNLKELALGGVT-ISSP-IPHSLA-NLSSLTLLSLSGCE--LRGR-IPSLLGNLTKLMYLDLSFN-NLLGELPTSIG  260 (922)
Q Consensus       188 ~~l~~L~~L~L~~n~-~~~~-~~~~l~-~l~~L~~L~Ls~n~--l~~~-~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~l~  260 (922)
                      ..+++|++|++++|. ++.. +...+. .+++|+.|+++++.  ++.. +.....++++|++|++++| .+++.....+.
T Consensus       118 ~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~  197 (284)
T d2astb2         118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF  197 (284)
T ss_dssp             HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred             HHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhc
Confidence            566777777777653 3321 112222 23567777766542  2221 2222344566666666654 34544555555


Q ss_pred             CCCCCcEEEcccC-CCCCCchhhhhCCCCCCEEEccCC
Q 002435          261 NLDCLKRLDISWN-ELSGELPASIGNLASLEQLELSLN  297 (922)
Q Consensus       261 ~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n  297 (922)
                      ++++|++|++++| .+++.....+.++++|++|+++++
T Consensus       198 ~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         198 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            6666666666664 344444444555666666666554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.6e-14  Score=149.05  Aligned_cols=176  Identities=16%  Similarity=0.167  Sum_probs=92.5

Q ss_pred             CCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCc-ccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEcc
Q 002435          289 LEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGE-LPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFS  367 (922)
Q Consensus       289 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  367 (922)
                      +..+.++...+...... .....+|++|+++++.+++. +...+..+++|++|++++|.+++..+..++.+++|++|+++
T Consensus        25 ~~~lrl~~~~~~~~~~~-~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls  103 (284)
T d2astb2          25 VIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS  103 (284)
T ss_dssp             CSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred             ceEeeccccccccchhh-hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccc
Confidence            34445544433322222 22334667777776665532 33445667777777777777766666667777777777777


Q ss_pred             CCCCcCccchhhhhhccCCcceEeCcCcc-ccccc--cccccCCCCccEEEecCCC--CC--CCcccccCCCCccEEECc
Q 002435          368 HNNFSGPIDLDMFLVNFKHLEHLSLSSNR-LSLFT--KAIFNTSQKFNFVGLRSCN--LN--EFPNFLKNQHYLEVLDLS  440 (922)
Q Consensus       368 ~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~--~~~~~~~~~L~~L~L~~~~--l~--~lp~~l~~~~~L~~L~Ls  440 (922)
                      +|.-.+..........+++|++|+++++. ++...  .......+.|+.|+++++.  ++  .+......+++|++|+++
T Consensus       104 ~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~  183 (284)
T d2astb2         104 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS  183 (284)
T ss_dssp             TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred             ccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccc
Confidence            75322222222333566777777777653 33211  1111224556666666542  32  233334556667777776


Q ss_pred             CCC-CCCCCCccccccCCCCccEEEccC
Q 002435          441 CNK-IHGKVPKWLIEPSMQNFSYLNLSH  467 (922)
Q Consensus       441 ~n~-l~~~~p~~~~~~~l~~L~~L~L~~  467 (922)
                      +|. +++.....+.  .+++|++|++++
T Consensus       184 ~~~~itd~~~~~l~--~~~~L~~L~L~~  209 (284)
T d2astb2         184 DSVMLKNDCFQEFF--QLNYLQHLSLSR  209 (284)
T ss_dssp             TCTTCCGGGGGGGG--GCTTCCEEECTT
T ss_pred             cccCCCchhhhhhc--ccCcCCEEECCC
Confidence            653 4444444443  445555555544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.46  E-value=6.1e-15  Score=159.11  Aligned_cols=136  Identities=19%  Similarity=0.214  Sum_probs=71.3

Q ss_pred             CCCCCEEeCcCCCCCCC----cccccCCCCCCcEEEcccCCCCCC-----chhhhhCCCCCCEEEccCCCCCCC----Cc
Q 002435          238 LTKLMYLDLSFNNLLGE----LPTSIGNLDCLKRLDISWNELSGE-----LPASIGNLASLEQLELSLNRFRGK----TP  304 (922)
Q Consensus       238 l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~----~~  304 (922)
                      .+.|+.+++++|.++..    +...+...+.|++|++++|.++..     +...+..+++|++|++++|.++..    +.
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            34455555555544322    112233445555555555555421     122344555566666666555422    12


Q ss_pred             ccccCCCCCcEEEeeccCCCCcc----cccccC--CCCCceEecCCCccCcc----Cchhhc-CCCCccEEEccCCCCcC
Q 002435          305 HSMGNFTRLYWLSLASNDFSGEL----PASFGN--LRSLEGLDISECKFSSQ----IPSSLR-NLAQLKFLEFSHNNFSG  373 (922)
Q Consensus       305 ~~l~~l~~L~~L~L~~n~l~~~~----p~~l~~--l~~L~~L~Ls~n~l~~~----~~~~l~-~l~~L~~L~L~~n~l~~  373 (922)
                      ..+..+++|++|++++|.+++.-    ...+..  .+.|++|++++|+++..    +...+. ++++|+.|++++|.+..
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            33445566666666666655321    122222  35688888888887643    223332 56788888888888763

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.44  E-value=2.9e-14  Score=153.73  Aligned_cols=251  Identities=17%  Similarity=0.172  Sum_probs=134.6

Q ss_pred             CCccccCCCCCCEEECCCCCCCCc----CchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcC
Q 002435          128 IPPEIINLSRLSYLNLSSAGFFGQ----IPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTI  203 (922)
Q Consensus       128 ~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~  203 (922)
                      +...+.....|++|+|++|.+...    +...+...++|+.|+++++.+.....    ..+..+.               
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~----~~~~~~~---------------   83 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKD----EIPEALR---------------   83 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGG----GSHHHHH---------------
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCccccccc----ccchHHH---------------
Confidence            445566677788888887766433    22334456777777777664321111    0000000               


Q ss_pred             CCCCchhccCCCCCCEEeccCccCCcc----CccccCCCCCCCEEeCcCCCCCCCcc-------------cccCCCCCCc
Q 002435          204 SSPIPHSLANLSSLTLLSLSGCELRGR----IPSLLGNLTKLMYLDLSFNNLLGELP-------------TSIGNLDCLK  266 (922)
Q Consensus       204 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~-------------~~l~~l~~L~  266 (922)
                        .+...+..+++|++|++++|.+...    +...+...++|++|++++|.+.....             ......+.|+
T Consensus        84 --~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~  161 (344)
T d2ca6a1          84 --LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR  161 (344)
T ss_dssp             --HHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             --HHHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccc
Confidence              0112233344455555554444332    12223344555566665555431100             1113456788


Q ss_pred             EEEcccCCCCCC----chhhhhCCCCCCEEEccCCCCCCC-----CcccccCCCCCcEEEeeccCCCCc----ccccccC
Q 002435          267 RLDISWNELSGE----LPASIGNLASLEQLELSLNRFRGK-----TPHSMGNFTRLYWLSLASNDFSGE----LPASFGN  333 (922)
Q Consensus       267 ~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~  333 (922)
                      .+++++|.++..    +...+...+.|++|++++|.+...     ....+..+++|+.|++++|.++..    +...+..
T Consensus       162 ~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~  241 (344)
T d2ca6a1         162 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS  241 (344)
T ss_dssp             EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred             eeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccc
Confidence            888888887632    334456677888888888877632     123355667777777777776532    3344566


Q ss_pred             CCCCceEecCCCccCccCc----hhhcC--CCCccEEEccCCCCcCccc--hhh-hhhccCCcceEeCcCccccc
Q 002435          334 LRSLEGLDISECKFSSQIP----SSLRN--LAQLKFLEFSHNNFSGPID--LDM-FLVNFKHLEHLSLSSNRLSL  399 (922)
Q Consensus       334 l~~L~~L~Ls~n~l~~~~~----~~l~~--l~~L~~L~L~~n~l~~~~~--~~~-~~~~l~~L~~L~Ls~n~l~~  399 (922)
                      +++|++|++++|.+++...    ..+..  .+.|++|++++|++...-.  ... ...+.++|++|++++|++..
T Consensus       242 ~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         242 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             cccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            7777777777777764322    22322  3457777777776652110  011 11245566667776666653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.37  E-value=1.5e-12  Score=116.42  Aligned_cols=103  Identities=28%  Similarity=0.361  Sum_probs=60.3

Q ss_pred             ceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCC
Q 002435          533 EILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGN  612 (922)
Q Consensus       533 ~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~  612 (922)
                      ++|++++|+++. ++ .+..+. .|++|++++|+|+ .+|..+..+++|++|++++|+|++. | .+..+++|++|++++
T Consensus         1 R~L~Ls~n~l~~-l~-~l~~l~-~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC-HLEQLL-LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCSS-CC-CGGGGT-TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCCC-Cc-ccccCC-CCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCC
Confidence            356666666663 23 355555 5666666666665 3445566666666666666666643 2 366666666666666


Q ss_pred             CcCccCcc-hhhcCCCCCCEEEcCCCcccc
Q 002435          613 NQISGTFP-SWLGTLRELNVLILKSNKLHG  641 (922)
Q Consensus       613 N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~  641 (922)
                      |++++... ..+..+++|++|++++|++..
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            66664332 345566666666666666554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.37  E-value=1.3e-12  Score=116.84  Aligned_cols=118  Identities=19%  Similarity=0.288  Sum_probs=95.3

Q ss_pred             cEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCC
Q 002435          558 SILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSN  637 (922)
Q Consensus       558 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  637 (922)
                      ++|++++|+++.. + .+..+++|++|++++|+|+ .+|..+..+++|++|++++|+|++. | .++.+++|++|++++|
T Consensus         1 R~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence            5799999999844 4 4889999999999999998 4677899999999999999999965 4 5899999999999999


Q ss_pred             cccccCCCCCCCCCCCCccEEEccCCcCCCC--CChhhhhccccce
Q 002435          638 KLHGMIREPNTGCGFPELRIIDLSNNRFTGK--LPSKYFQCWNAMQ  681 (922)
Q Consensus       638 ~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~--ip~~~~~~~~~l~  681 (922)
                      ++..... ......+++|+.|++++|++++.  ++......+++++
T Consensus        76 ~i~~~~~-~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~  120 (124)
T d1dcea3          76 RLQQSAA-IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS  120 (124)
T ss_dssp             CCCSSST-TGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred             ccCCCCC-chhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcc
Confidence            9987642 22336789999999999999743  3344444444443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=5e-13  Score=125.87  Aligned_cols=86  Identities=23%  Similarity=0.159  Sum_probs=43.9

Q ss_pred             cCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCE
Q 002435          212 ANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQ  291 (922)
Q Consensus       212 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  291 (922)
                      .+..++++|+|++|+++. ++..+..+++|++|+|++|.++..  +.+..+++|++|++++|+++...+..+..+++|++
T Consensus        15 ~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             ECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccccc
Confidence            344455555555555552 233344555555555555555522  23555555555555555555333333344555555


Q ss_pred             EEccCCCCC
Q 002435          292 LELSLNRFR  300 (922)
Q Consensus       292 L~L~~n~l~  300 (922)
                      |++++|++.
T Consensus        92 L~L~~N~i~  100 (162)
T d1a9na_          92 LILTNNSLV  100 (162)
T ss_dssp             EECCSCCCC
T ss_pred             ceecccccc
Confidence            555555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=8e-13  Score=124.41  Aligned_cols=111  Identities=23%  Similarity=0.120  Sum_probs=63.9

Q ss_pred             cCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCc
Q 002435          235 LGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLY  314 (922)
Q Consensus       235 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  314 (922)
                      +.+..++++|+|++|+|+.. +..+..+++|+.|++++|.++ .+ +.+..+++|++|++++|+++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~-~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCC-cc-CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            44566677777777777633 444556666777777777666 33 2356666666666666666654444445556666


Q ss_pred             EEEeeccCCCCccc-ccccCCCCCceEecCCCccC
Q 002435          315 WLSLASNDFSGELP-ASFGNLRSLEGLDISECKFS  348 (922)
Q Consensus       315 ~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~  348 (922)
                      .|++++|.+..... ..+..+++|++|++++|.++
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cceeccccccccccccccccccccchhhcCCCccc
Confidence            66666665543211 23445555555555555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.4e-11  Score=113.34  Aligned_cols=118  Identities=18%  Similarity=0.132  Sum_probs=86.5

Q ss_pred             ccEEEcCCCcccCCCcccccCCCCccEEecCCC-cccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcC
Q 002435          557 LSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDN-LLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILK  635 (922)
Q Consensus       557 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  635 (922)
                      .+.++.+++.+. ..|..+..+++|++|++++| .|+.+.+..|.++++|+.|+|++|+|+.+.|.+|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            344566666655 34555666777888888655 4777767778888888888888888887778888888888888888


Q ss_pred             CCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccc
Q 002435          636 SNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWN  678 (922)
Q Consensus       636 ~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~  678 (922)
                      +|+++...+..+   ...+|+.|+|++|+|.|.+...|+..|.
T Consensus        89 ~N~l~~l~~~~~---~~~~l~~L~L~~Np~~C~C~~~~l~~~~  128 (156)
T d2ifga3          89 FNALESLSWKTV---QGLSLQELVLSGNPLHCSCALRWLQRWE  128 (156)
T ss_dssp             SSCCSCCCSTTT---CSCCCCEEECCSSCCCCCGGGHHHHHHH
T ss_pred             CCCCcccChhhh---ccccccccccCCCcccCCchHHHHHHHH
Confidence            888886544443   2346999999999999888777665543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.16  E-value=1.4e-12  Score=127.42  Aligned_cols=119  Identities=24%  Similarity=0.251  Sum_probs=91.0

Q ss_pred             cCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccc
Q 002435          520 KIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSL  599 (922)
Q Consensus       520 ~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l  599 (922)
                      .+|..+.. +++|++|+|++|+|+.. + .+..+. +|++|++++|.|+. +|..+..+++|++|++++|+++..  ..+
T Consensus        39 ~l~~sl~~-L~~L~~L~Ls~n~I~~i-~-~l~~l~-~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l--~~~  111 (198)
T d1m9la_          39 KMDATLST-LKACKHLALSTNNIEKI-S-SLSGME-NLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL--SGI  111 (198)
T ss_dssp             CCHHHHHH-TTTCCEEECSEEEESCC-C-CHHHHT-TCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH--HHH
T ss_pred             hhhhHHhc-ccccceeECcccCCCCc-c-cccCCc-cccChhhccccccc-cccccccccccccccccccccccc--ccc
Confidence            34455655 88899999999998853 3 577777 79999999998874 455555567899999999988854  347


Q ss_pred             cCCCCCcEEECCCCcCccCcc-hhhcCCCCCCEEEcCCCcccccCCC
Q 002435          600 VNCSSLKFLDLGNNQISGTFP-SWLGTLRELNVLILKSNKLHGMIRE  645 (922)
Q Consensus       600 ~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~  645 (922)
                      ..+++|++|++++|+++.... ..+..+++|+.|++++|++....+.
T Consensus       112 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  158 (198)
T d1m9la_         112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCT
T ss_pred             cccccccccccccchhccccccccccCCCccceeecCCCccccCccc
Confidence            788889999999998885432 5678888899999998888766544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=8.2e-11  Score=109.59  Aligned_cols=81  Identities=20%  Similarity=0.166  Sum_probs=48.2

Q ss_pred             EEEeccccccccCcccccccCCCCEEeCCCc-cccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCC
Q 002435          733 GVILSSNRFDGEIPTSIANLKGLQVLSLANN-SLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNN  811 (922)
Q Consensus       733 ~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N-~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N  811 (922)
                      .++.++++++ .+|..+..+++|+.|++++| .++...+.+|.++++|+.|+|++|+|++..|.+|..+++|++|+|++|
T Consensus        12 ~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             eEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            4555555555 34555555666666666544 355555555666666666666666666655666666666666666666


Q ss_pred             ccc
Q 002435          812 NLT  814 (922)
Q Consensus       812 ~ls  814 (922)
                      +|+
T Consensus        91 ~l~   93 (156)
T d2ifga3          91 ALE   93 (156)
T ss_dssp             CCS
T ss_pred             CCc
Confidence            665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.11  E-value=4.5e-13  Score=130.88  Aligned_cols=43  Identities=23%  Similarity=0.277  Sum_probs=24.0

Q ss_pred             CCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCC
Q 002435          128 IPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSY  172 (922)
Q Consensus       128 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~  172 (922)
                      +|..+..+++|++|+|++|.+. .++ .+..+++|++|++++|++
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i   82 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLI   82 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEE
T ss_pred             hhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhccccc
Confidence            3445555666666666666553 333 355566666666666653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.1e-07  Score=88.62  Aligned_cols=15  Identities=40%  Similarity=0.671  Sum_probs=7.6

Q ss_pred             CCCCCCEEEcCCCCC
Q 002435          158 ELSNLVSLDLSHNSY  172 (922)
Q Consensus       158 ~l~~L~~L~Ls~n~~  172 (922)
                      ++++|++|+|++|++
T Consensus        63 ~~~~L~~L~Ls~N~i   77 (162)
T d1koha1          63 NIPELLSLNLSNNRL   77 (162)
T ss_dssp             HCTTCCCCCCCSSCC
T ss_pred             hCCCCCEeeCCCccc
Confidence            345555555555544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.1e-07  Score=88.44  Aligned_cols=86  Identities=23%  Similarity=0.206  Sum_probs=45.6

Q ss_pred             cccCCCCccEEecCCCcccccC--CccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCC-----
Q 002435          574 TFLSGRSLMMIDLSDNLLQGRI--PRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREP-----  646 (922)
Q Consensus       574 ~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~-----  646 (922)
                      .+..+++|++|+|++|+|+...  +..+..+++|+.|+|++|+|+...+-.+.....|+.|++++|++.......     
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence            3344556666666666665432  234555666666666666666544433334445666666666665433221     


Q ss_pred             CCCCCCCCccEEE
Q 002435          647 NTGCGFPELRIID  659 (922)
Q Consensus       647 ~~~~~l~~L~~Ld  659 (922)
                      .....+|+|+.||
T Consensus       140 ~i~~~~P~L~~LD  152 (162)
T d1koha1         140 AIRERFPKLLRLD  152 (162)
T ss_dssp             HHHTTSTTCCEET
T ss_pred             HHHHHCCCCCEEC
Confidence            0113456666664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.71  E-value=2e-05  Score=73.17  Aligned_cols=89  Identities=10%  Similarity=0.099  Sum_probs=40.5

Q ss_pred             CCCCCEEECCCC-CCCCc----CchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCC--
Q 002435          135 LSRLSYLNLSSA-GFFGQ----IPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPI--  207 (922)
Q Consensus       135 l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~--  207 (922)
                      .++|++|+|+++ .+...    +-..+...++|++|++++|.+....   ...+...+...+.|++|++++|.++...  
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~---~~~la~~L~~n~~L~~L~L~~n~i~~~g~~   90 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSE---ARGLIELIETSPSLRVLNVESNFLTPELLA   90 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHH---HTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhH---HHHHhhhhhhcccccceeeehhhcchHHHH
Confidence            345555555543 23221    2223444555666666666542211   1333444455555555555555554322  


Q ss_pred             --chhccCCCCCCEEeccCcc
Q 002435          208 --PHSLANLSSLTLLSLSGCE  226 (922)
Q Consensus       208 --~~~l~~l~~L~~L~Ls~n~  226 (922)
                        ..++...+.|++|++++|+
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHHHhCCcCCEEECCCCc
Confidence              1223344445555554443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.58  E-value=3.6e-05  Score=71.33  Aligned_cols=86  Identities=19%  Similarity=0.145  Sum_probs=38.4

Q ss_pred             ccCCCCCCEEeccCccCCcc----CccccCCCCCCCEEeCcCCCCCCC----cccccCCCCCCcEEEcccCCCCCC----
Q 002435          211 LANLSSLTLLSLSGCELRGR----IPSLLGNLTKLMYLDLSFNNLLGE----LPTSIGNLDCLKRLDISWNELSGE----  278 (922)
Q Consensus       211 l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----  278 (922)
                      +...+.|++|+|++|.+...    +...+...+.|++|+|++|.+++.    +..++...+.|++|++++|.+...    
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~  119 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  119 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence            34444555555555554421    112233345555555555555432    122344445555555555543211    


Q ss_pred             ---chhhhhCCCCCCEEEccC
Q 002435          279 ---LPASIGNLASLEQLELSL  296 (922)
Q Consensus       279 ---~~~~l~~l~~L~~L~L~~  296 (922)
                         +...+...++|+.|+++.
T Consensus       120 ~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_         120 EMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             HHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHHHHhCCCccEeeCcC
Confidence               223344445555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.96  E-value=0.00018  Score=66.31  Aligned_cols=46  Identities=15%  Similarity=0.151  Sum_probs=19.7

Q ss_pred             hcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCC
Q 002435          156 ILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTIS  204 (922)
Q Consensus       156 l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~  204 (922)
                      +...++|++|++++|.+....   ...+...+...+.++.++++++.+.
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~---~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPV---AFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHH---HHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HhcCCccCeeeccCCcccHHH---HHHHHHHHhhcccchhhhhcccccc
Confidence            334555555555555432111   0122233444445555555544443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.90  E-value=0.00028  Score=65.02  Aligned_cols=86  Identities=16%  Similarity=0.209  Sum_probs=37.0

Q ss_pred             cCCCCCCEEeccCccCCcc----CccccCCCCCCCEEeCcCCCCCCC----cccccCCCCCCcEEEcc--cCCCCC----
Q 002435          212 ANLSSLTLLSLSGCELRGR----IPSLLGNLTKLMYLDLSFNNLLGE----LPTSIGNLDCLKRLDIS--WNELSG----  277 (922)
Q Consensus       212 ~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~--~n~l~~----  277 (922)
                      ...++|++|++++|.+...    +...+...+.++.+++++|.++..    +...+...+.|+.++|+  +|.+..    
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~  122 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  122 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHH
Confidence            3444555555555544322    112233344555555555544322    12334444555544432  333432    


Q ss_pred             CchhhhhCCCCCCEEEccCC
Q 002435          278 ELPASIGNLASLEQLELSLN  297 (922)
Q Consensus       278 ~~~~~l~~l~~L~~L~L~~n  297 (922)
                      .+...+...++|+.|+++.+
T Consensus       123 ~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         123 EIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHhCCCcCEEeCcCC
Confidence            12333445555555555443