Citrus Sinensis ID: 002440

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-

MAWFSGKVSLGNFPDLAGAVNKFSESVKNIEKNFDTALGFDEKAEKSAKPETSSSNEGLWPVMSFMGHKSEGSSPTESSGKPQTPQQQSKPEEKVGVETERSVHSATGEVYADKQKASPKTEKDDEHPDTAENLDFVVSEHGKVDSESNIVPNDPSESAIQNIDSSEPVDNQQQKVTSDLGTSEETESGEAKSGPFEADQIEISSSLRDESDNVANACQSKDEGKKEESNYEEKSQAEEMIETGSPVQAEVSSTIQAEVGTESSDSQSVSAEETERVRELLSSSASSPKAVSETVCAPVSPEHGEKDKAVEVEQQANDSGIVSEEQRLSSEANVSVSADSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVESIKRDKTATEKLLQETIEKHQVELGEQKDYYTNALAAAKEAEELAEARANNEARAELESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQELQEALMHRELLQQEIEREKTARVDLERRASAESAAVSEKTPIARHTSAFENGSLSRKLSSASSLGSMEESHFLQASLDSSDSLSDRKNTVEPTMSPYYVKSMTPSAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQVHVQVVFILRISIELLYISIHIFMFRKR

cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHcccHHHHcHHHcccHHHHHHHcccccccccccccHHHccHHHHHHcccccccccccccccccHHHHccccccccHHHHHHHHHHcccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcHHHHHHHHHHHHHcccccHHHccHHHHHHcccccccccccHHHHHHHHHHHcccccccccccHHHccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccccccccHHHHHHHHccccccccHHHccccccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc

ccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHccHHHHHHccccHccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcHHHHccHHHHHHHHHcccccccHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc

mawfsgkvslgnfpdlagavNKFSESVKNIEKNFDTAlgfdekaeksakpetsssneglwpvmsfmghksegssptessgkpqtpqqqskpeekvgvETERSvhsatgevyadkqkaspktekddehpdtaenLDFVVSehgkvdsesnivpndpsesaiqnidssepvdnqqqkvtsdlgtseetesgeaksgpfeadqiEISSslrdesdnvanacqskdegkkeesnyEEKSQAEEMIETGSPVQAEVSSTIQaevgtessdsqsvsaEETERVRELLSssasspkavsetvcapvspehgekdkAVEVEQQandsgivseeqrlsseanvsvsADSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVESIKRDKTATEKLLQETIEKHQVELGEQKDYYTNALAAAKEAEELAEARANNEARAELESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVtqvpestrPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQELQEALMHRELLQQEIEREKTARVDLERRASAesaavsektpiarhtsafengslsrklssasslgsmeeSHFLQasldssdslsdrkntveptmspyyvksmtpSAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQVHVQVVFILRISIELLYISIHIFMFRKR

mawfsgkvslgnfpdLAGAVNKFSESVKNIEKNFDTALGfdekaeksakpetsssneglWPVMSFMGHKSEGSsptessgkpqtpqqqskpeekvgvetersvhsatgevyadkqkaspktekddehpdtAENLDFVVSEHGKVDSESNIVPNDPSESAIQNidssepvdnqqqkvtsdlgtseetesgeaksgpfeaDQIEIssslrdesdnvanacqskdegkkeesnYEEKSQAEEMIETGSPVQAEVSSTIQaevgtessdsqsvsaEETERVRELlsssasspkavseTVCAPVSPEHGEKDKAVEVEQQAndsgivseeqrlsseanvsvsadsVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYhqrvatlerkvyaltkerdtlrreqnkksdaaallkeKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELeeekkglvtklqveenkvesikrdktaTEKLLQETIEKHqvelgeqkDYYTNALAAAKEAEELAEARANNEARAELESRLREAGERETMLVQALEELRQtlsrteqqavfredmlrrDIEDLQRRyqaserrceelvtqvpestrpllRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAaaseerersvnerlsqtlsRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLaakeeadtqegraNQLEEEIKELRRKHKQELQEALMHRELLQQEIEREKTARVDLERrasaesaavsektpiarhtsafengslsRKLSSASSLGSMEESHFLQasldssdslsDRKNtveptmspyyvksMTPSAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQVHVQVVFILRISIELLYISIHIFMFRKR

MAWFSGKVSLGNFPDLAGAVNKFSESVKNIEKNFDTALGFDEKAEKSAKPETSSSNEGLWPVMSFMGHKSEGSSPTESSGKPQTPQQQSKPEEKVGVETERSVHSATGEVYADKQKASPKTEKDDEHPDTAENLDFVVSEHGKVDSESNIVPNDPSESAIQNIDSSEPVDNQQQKVTSDLGTSEETESGEAKSGPFEADQIEISSSLRDESDNVANACQSKDEGKKEESNYEEKSQAEEMIETGSPVQAEVSSTIQAEVGTESSDSQSVSAEETErvrellsssasspkavseTVCAPVSPEHGEKDKAVEVEQQANDSGIVSEEQRLSSEANVSVSADSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVESIKRDKTATEKLLQETIEKHQVELGEQKDYYTnalaaakeaeelaearannearaelesrlreagereTMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQettarraeawaaverSLNLRLQeaeakaaaseerersVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQELQEALMHRELLQQEIEREKTARVDLerrasaesaaVSEKTPIARHTSAFENGslsrklssasslgsMEESHFLQAsldssdslsdRKNTVEPTMSPYYVKSMTPSAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQVHVQVVFILRISIELLYISIHIFMFRKR

*******VSLGNFPDLAGAVNKF*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************YHQRVATLERKVYAL************************************************************************************************************Y****************************************************************************************************I**I********EAWAAV***********************************INVLEAQISCL**********************************************************************************************************************************************************************************************LAEELVKMTAQVHVQVVFILRISIELLYISIHIFMF***

*AWF***VSLGN*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************YISIHIFMFR**

MAWFSGKVSLGNFPDLAGAVNKFSESVKNIEKNFDTALGFD***************EGLWPVMSFMGH************************************SATGEV******************DTAENLDFVVSEHGKVDSESNIVPNDPSESAIQNIDS******************************FEADQIEISSSLRDESDNVANA*******************************************************************************APVSPEHGEKDKAVEVEQQANDSGIVS**************ADSVCELEKLKREMKMMET*************DEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAE***************RKLRAQIRELEEEKKGLVTKLQVEENKVESIKRDKTATEKLLQETIEKHQVELGEQKDYYTNALAAAKEAEELAEARANNEARAELESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRL*********************SQTLSRINVLEAQISCLRAEQTQL**************RQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQELQEALMHRELLQQEIEREKTARVD***************TPIARHTSAFE**************************************TVEPTMSPYYVKSMTPSAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQVHVQVVFILRISIELLYISIHIFMFRKR

*AWFSGKVSLGNFPDLAGAVNKFSESVKNIEKNFDTALGF****************************************************************************************************************************SSEPVD******TSDLGTSE***********F**DQIEISSSLRDESDNVANACQSKDEG*******************G***Q********AEVGTES*************VRELLSSSASSP*******CAPVSPEH************************************SVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVESIKRDKTATEKLLQETIEKHQVELGEQKDYYTNALAAAKEAEELAEARANNEARAELESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQELQEALMHRELLQQEIEREKTARVDLERRASAESAAVSEKT**A***************************************************SPYYVKSMTPSAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQVHVQVVFILRISIELLYISIHIFMFRKR

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii

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MAWFSGKVSLGNFPDLAGAVNKFSESVKNIEKNFDTALGFDEKAEKSAKPETSSSNEGLWPVMSFMGHKSEGSSPTESSGKPQTPQQQSKPEEKVGVETERSVHSATGEVYADKQKASPKTEKDDEHPDTAENLDFVVSEHGKVDSESNIVPNDPSESAIQNIDSSEPVDNQQQKVTSDLGTSEETESGEAKSGPFEADQIEISSSLRDESDNVANACQSKDEGKKEESNYEEKSQAEEMIETGSPVQAEVSSTIQAEVGTESSDSQSVSAEETERVRELLSSSASSPKAVSETVCAPVSPEHGEKDKAVEVEQQANDSGIVSEEQRLSSEANVSVSADSVCExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQNKKSDAAALLKEKDEIINQVMAExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVESIKRDKTATEKLLQETIEKHQVELGEQKDYYTNALAAAKEAEELAExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVPESTRPLLRQIEAIQETTARRAEAWAAVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxASAESAAVSEKTPIARHTSAFENGSLSRKLSSASSLGSMEESHFLQASLDSSDSLSDRKNTVEPTMSPYYVKSMTPSAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQVHVQVVFILRISIELLYISIHIFMFRKR

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		921	2.2.26 [Sep-21-2011]
Q0WVL7		956	Golgin candidate 5 OS=Ara	yes	no	0.935	0.901	0.625	0.0
P82094		1093	TATA element modulatory f	yes	no	0.500	0.421	0.298	8e-35
B9EKI3		1091	TATA element modulatory f	yes	no	0.507	0.428	0.292	6e-31

>sp\|Q0WVL7\|GOGC5_ARATH Golgin candidate 5 OS=Arabidopsis thaliana GN=GC5 PE=1 SV=1	Back alignment and function desciption

 Score =  999 bits (2584), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 578/924 (62%), Positives = 695/924 (75%), Gaps = 62/924 (6%)

Query: 1   MAWFSGKVSLGNFPDLAGAVNKFSESVKNIEKNFDTALGFDEKAEKSAKPETSSSNEGLW 60
           MAWFSGKVSLG FPDL GAVNKF ESVKNIEKNFD ALGFD+K++ +A+   SS    +W
Sbjct: 1   MAWFSGKVSLGGFPDLTGAVNKFQESVKNIEKNFDNALGFDDKSDSAAEDAASS----MW 56

Query: 61  P-----------VMSFMGHKSEGSSPT-ESSGKPQTPQQQSKPEEKVGVETERSVHSATG 108
           P           VMSFMG+ S+    T E S + + P Q  + EE+ G     SV  AT 
Sbjct: 57  PPAVDTKSLFDPVMSFMGNTSDEKPDTLEDSVRTENPSQIEQKEEEAG-----SVKLATE 111

Query: 109 EVYADKQKASPKTEKDDEHPDTAENLDFVVSEHGKVDSESNIVPNDPSESAIQNIDSS-- 166
           +  + +        ++ +  D  E  + VV +    + +S I+  + SE ++Q  +SS  
Sbjct: 112 QAVSVEANKETNVRREADQADNPEVTETVVLDPKDDEPQSQILLEESSEYSLQTPESSGY 171

Query: 167 ----EPVDNQQQKVTSDLGTSEETESGEAK-SGPFEADQIEISSSLRDESDNVANACQSK 221
               +P  N++ ++T+   +  E    EA+ S P +++  E++    +  D V +     
Sbjct: 172 KTSLQP--NEKLEMTASQDSQPEQPKSEAEESQPEDSEAKEVTV---ENKDTVHSPVL-- 224

Query: 222 DEGKKEESNYEEKSQAEEMIETGSPVQAEVSSTIQAEVGTESSDSQSVSAEETERVRELL 281
            +G+ + +  +E +  +E++  G  ++   SS    EV   S D   V+          +
Sbjct: 225 -DGQHKITYMDETTNEQEIL--GENLEGRTSSK-NFEV---SPDINHVNR---------I 268

Query: 282 SSSASSPKAVSETVCAPVS---PEHGEKDKAVE-----VEQQAN---DSGIVSEEQRLSS 330
            S  + P  + E+  +P     P+    D+  E     V ++ +   D+  ++E QR SS
Sbjct: 269 ESPVAHPSLIFESDGSPYESSIPKRSSSDEISERIVDFVSREIDSRLDTSELNESQRSSS 328

Query: 331 EANVSVSADSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLK 390
             NVS SAD + ELEK K+E+KM+E ALQGAARQAQAKADEIAK+M+ENE LK+V EDLK
Sbjct: 329 ATNVSDSADVILELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHENEQLKSVTEDLK 388

Query: 391 RKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQV 450
           RK+N+AE+E+LREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQV
Sbjct: 389 RKSNEAEVESLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQV 448

Query: 451 MAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVESIKRDKTATEKLL 510
           MAEGEELSKKQAAQEAQIRKLRAQIRE EEEKKGL+TKLQ EENKVESIKRDKTATEKLL
Sbjct: 449 MAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEKLL 508

Query: 511 QETIEKHQVELGEQKDYYTNALAAAKEAEELAEARANNEARAELESRLREAGERETMLVQ 570
           QETIEKHQ EL  QKDYY+NALAAAKEA+ LAE R NNEAR+ELE+RL+EAGERE+MLVQ
Sbjct: 509 QETIEKHQAELTSQKDYYSNALAAAKEAQALAEERTNNEARSELENRLKEAGERESMLVQ 568

Query: 571 ALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIE 630
           ALEELRQTLS+ EQQAV+REDM R +IEDLQRRYQASERRCEEL+TQVPESTRPLLRQIE
Sbjct: 569 ALEELRQTLSKKEQQAVYREDMFRGEIEDLQRRYQASERRCEELITQVPESTRPLLRQIE 628

Query: 631 AIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQIS 690
           A+QET+ R AEAWAAVER+LN RLQEAE+KAA +EERERSVNERLSQTLSRINVLEAQ+S
Sbjct: 629 AMQETSYRTAEAWAAVERTLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLS 688

Query: 691 CLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQELQ 750
           CLRAEQ QL+KSLEKERQRAAENRQEYLAAKEEADT EGRANQLE EI+ELRRKHKQELQ
Sbjct: 689 CLRAEQGQLSKSLEKERQRAAENRQEYLAAKEEADTLEGRANQLEVEIRELRRKHKQELQ 748

Query: 751 EALMHRELLQQEIEREKTARVDLERRASAESAAVSEKTPIARHTSAFENGSLSRKLSSAS 810
           E L+H EL+Q+++EREK +R+DLER A   S+AVSE+ PIAR  SAFENGSL RKLSSAS
Sbjct: 749 EVLLHNELIQKDLEREKASRLDLERTARINSSAVSEQLPIARQNSAFENGSLPRKLSSAS 808

Query: 811 SLGSMEESHFLQASLDSSDSLSDRKNTVEPTMSPYYVKSMTPSAFESILRQKEGELASYM 870
           SLGSMEES+FLQASLDSSD  S++++  E TMSPYY+KS+TPSA+E+ LRQKEGELASYM
Sbjct: 809 SLGSMEESYFLQASLDSSDKFSEKRSMPEATMSPYYMKSITPSAYEATLRQKEGELASYM 868

Query: 871 SRLASMESIRDSLAEELVKMTAQV 894
           +RLASMESIRDSLAEELVKMTA+ 
Sbjct: 869 TRLASMESIRDSLAEELVKMTAEC 892

Golgi matrix protein playing a role in tethering of vesicles to Golgi membranes and in maintaining the overall structure of the Golgi apparatus.
Arabidopsis thaliana (taxid: 3702)

>sp\|P82094\|TMF1_HUMAN TATA element modulatory factor OS=Homo sapiens GN=TMF1 PE=1 SV=2	Back alignment and function description

>sp\|B9EKI3\|TMF1_MOUSE TATA element modulatory factor OS=Mus musculus GN=Tmf1 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		921
224070913		975	predicted protein [Populus trichocarpa]	0.948	0.896	0.689	0.0
302144021		931	unnamed protein product [Vitis vinifera]	0.939	0.929	0.669	0.0
225455135		978	PREDICTED: golgin candidate 5-like isofo	0.958	0.902	0.652	0.0
359490786		988	PREDICTED: golgin candidate 5-like isofo	0.958	0.893	0.639	0.0
145337778		956	golgin candidate 5 [Arabidopsis thaliana	0.935	0.901	0.625	0.0
87240431		992	tRNA-binding arm; t-snare [Medicago trun	0.957	0.889	0.629	0.0
334184028		976	golgin candidate 5 [Arabidopsis thaliana	0.935	0.883	0.612	0.0
356556298		988	PREDICTED: golgin candidate 5-like [Glyc	0.951	0.886	0.647	0.0
449466821		1016	PREDICTED: golgin candidate 5-like [Cucu	0.954	0.865	0.618	0.0
356550526		989	PREDICTED: golgin candidate 5-like [Glyc	0.953	0.887	0.645	0.0

>gi\|224070913\|ref\|XP_002303293.1\| predicted protein [Populus trichocarpa] gi\|222840725\|gb\|EEE78272.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1126 bits (2912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 636/922 (68%), Positives = 730/922 (79%), Gaps = 48/922 (5%)

Query: 1   MAWFSGKVSLGNFPDLAGAVNKFSESVKNIEKNFDTALGFDEKAEKSAKPETSSSNEGLW 60
           MAWFSGKVSLGNFPDLAGAVNK SESVKNIEKNFDTALGF++K++ S+  E S    GLW
Sbjct: 1   MAWFSGKVSLGNFPDLAGAVNKLSESVKNIEKNFDTALGFEDKSDSSSTTEAS----GLW 56

Query: 61  PVMSFMGHKSEGSSPTESSGKPQTPQQQSKPEEKVGVETERSVHSATGEVYADKQKASPK 120
           PVMSFMG+KSE S+  ESSGK  +PQ+ S  EEK       S +S T +  + ++    +
Sbjct: 57  PVMSFMGNKSEDSTD-ESSGKTVSPQKLSTVEEK------ESQNSDTQQTTSAEENQMLE 109

Query: 121 TEKDDEHPDTAENLDFVVSEHGKVDSESNIVPN----DPSESAIQNIDSSEPVDNQQQKV 176
            +KD EHP+ AE  D V+S+ GK + ES I       +P E  + ++   E VD+ Q K 
Sbjct: 110 RKKDAEHPEIAEKKDDVISDTGKAELESEIQSETKAVEPPEPVVHDVKVPESVDDVQGKE 169

Query: 177 TSDLGTSEETESGEAKSGPFEADQIEISSSLRDESDNVANACQSKDEGKKEESNYEEKSQ 236
            S+ G +E  ++ E +S     D++E  S L DES NV++   S DE         +++Q
Sbjct: 170 ISEEGCAENLDTLEVRSEASRVDEVEAPSILHDESHNVSHTPDSTDE---------QEAQ 220

Query: 237 AEEMIETGSPVQAEVSS--------TIQAEVGTE----------------SSDSQSVSAE 272
           AEE +E  S +QAEVS+         +QA+  T+                SS SQ VSAE
Sbjct: 221 AEETVERSSTIQAEVSNEPQPEALNDVQAQASTDILAEASSDTRAGAVLDSSSSQPVSAE 280

Query: 273 ETERVRELLSSSASSPKAVSETVCAPVSPEHGEKDKAVEVEQQANDSGIVSEEQRLSSEA 332
            +E V E   S AS     SE V   VS      ++ V  +++ ND  I  ++Q LS  +
Sbjct: 281 VSEMVHEFSLSDASPLDEASEIVSGSVSLADDVHNQTVGGDKRVNDGEIDIKDQHLSLRS 340

Query: 333 NVSVSADSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRK 392
           N+S S DS  ELEK+K EMKMMETALQGAARQAQAKADEIAK+MNENEHLK VIE+LKRK
Sbjct: 341 NISDSIDSTLELEKVKTEMKMMETALQGAARQAQAKADEIAKLMNENEHLKIVIEELKRK 400

Query: 393 TNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMA 452
           +NDAE+E+LREEYHQRVATLERKVYALTKERDTLRRE NKKSDAAALLKEKDEIINQVMA
Sbjct: 401 SNDAEIESLREEYHQRVATLERKVYALTKERDTLRREHNKKSDAAALLKEKDEIINQVMA 460

Query: 453 EGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVESIKRDKTATEKLLQE 512
           EGEELSKKQAAQE+ IRKLRAQIRELEEEKKGL+TK+QVEENKVESIK+DKTATE LLQE
Sbjct: 461 EGEELSKKQAAQESTIRKLRAQIRELEEEKKGLMTKVQVEENKVESIKKDKTATENLLQE 520

Query: 513 TIEKHQVELGEQKDYYTNALAAAKEAEELAEARANNEARAELESRLREAGERETMLVQAL 572
           TIEKHQ EL  QK YYTNAL+AAKEAE LAEAR NNEAR ELESRLREA ERETMLVQAL
Sbjct: 521 TIEKHQAELSAQKIYYTNALSAAKEAEALAEARVNNEARTELESRLREAEERETMLVQAL 580

Query: 573 EELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAI 632
           EELRQTL+R EQQAVFRE+MLRRDIEDLQ+RYQASERRCEEL+TQVP+STRPLLRQIEA+
Sbjct: 581 EELRQTLTRKEQQAVFREEMLRRDIEDLQKRYQASERRCEELITQVPDSTRPLLRQIEAM 640

Query: 633 QETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCL 692
           QETTARRAEAWAAVERSLN RLQEAEAKAA +EERERSVNERLSQTLSRINVLEAQISCL
Sbjct: 641 QETTARRAEAWAAVERSLNSRLQEAEAKAADAEERERSVNERLSQTLSRINVLEAQISCL 700

Query: 693 RAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQELQEA 752
           R+EQTQL++SLEKERQRAAEN+QEYLAAKEEADTQEGRANQLE +IKELR+KHK+E+Q+A
Sbjct: 701 RSEQTQLSRSLEKERQRAAENKQEYLAAKEEADTQEGRANQLEGQIKELRQKHKEEIQDA 760

Query: 753 LMHRELLQQEIEREKTARVDLERRASAESAAVSEKTPIARHTSAFENGSLSRKLSSASSL 812
           L++RELLQQEIEREK AR++LER A   SA+ S+KTPIAR  SAFENG+L+RKLSSASSL
Sbjct: 761 LINRELLQQEIEREKAARLELERTAHIHSASASDKTPIARSNSAFENGNLTRKLSSASSL 820

Query: 813 GSMEESHFLQASLDSSDSLSDRKNTVEPTMSPYYVKSMTPSAFESILRQKEGELASYMSR 872
           GS+EES+FLQASLD+SDSLS+R+N  E TMSPYY+KSMTPSAFES LRQKEGELASYMSR
Sbjct: 821 GSIEESYFLQASLDTSDSLSERRNPGEATMSPYYMKSMTPSAFESALRQKEGELASYMSR 880

Query: 873 LASMESIRDSLAEELVKMTAQV 894
           LASMESIRDSLAEELVKMTAQ 
Sbjct: 881 LASMESIRDSLAEELVKMTAQC 902

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|302144021\|emb\|CBI23126.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225455135\|ref\|XP_002267350.1\| PREDICTED: golgin candidate 5-like isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359490786\|ref\|XP_003634167.1\| PREDICTED: golgin candidate 5-like isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi|145337778|ref|NP_178101.3| golgin candidate 5 [Arabidopsis thaliana] gi|186496537|ref|NP_001117622.1| golgin candidate 5 [Arabidopsis thaliana] gi|334184030|ref|NP_001185442.1| golgin candidate 5 [Arabidopsis thaliana] gi|122175613|sp|Q0WVL7.1|GOGC5_ARATH RecName: Full=Golgin candidate 5; Short=AtGC5 gi|110741773|dbj|BAE98831.1| hypothetical protein [Arabidopsis thaliana] gi|164708704|gb|ABY67249.1| putative TMF-like protein [Arabidopsis thaliana] gi|332198186|gb|AEE36307.1| golgin candidate 5 [Arabidopsis thaliana] gi|332198187|gb|AEE36308.1| golgin candidate 5 [Arabidopsis thaliana] gi|332198189|gb|AEE36310.1| golgin candidate 5 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|87240431\|gb\|ABD32289.1\| tRNA-binding arm; t-snare [Medicago truncatula]	Back alignment and taxonomy information

>gi\|334184028\|ref\|NP_001185441.1\| golgin candidate 5 [Arabidopsis thaliana] gi\|332198188\|gb\|AEE36309.1\| golgin candidate 5 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356556298\|ref\|XP_003546463.1\| PREDICTED: golgin candidate 5-like [Glycine max]	Back alignment and taxonomy information

>gi\|449466821\|ref\|XP_004151124.1\| PREDICTED: golgin candidate 5-like [Cucumis sativus] gi\|449516290\|ref\|XP_004165180.1\| PREDICTED: golgin candidate 5-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356550526\|ref\|XP_003543637.1\| PREDICTED: golgin candidate 5-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		921
ZFIN\|ZDB-GENE-040801-25		1136	tmf1 "TATA element modulatory	0.786	0.637	0.215	3.5e-26
UNIPROTKB\|G3V9T2		1093	Tmf1 "Protein Tmf1" [Rattus no	0.763	0.643	0.210	1.3e-23
UNIPROTKB\|F1MUW6		1094	TMF1 "Uncharacterized protein"	0.690	0.581	0.208	1.7e-23
UNIPROTKB\|F1NHB9		1110	TMF1 "Uncharacterized protein"	0.787	0.653	0.211	6.7e-23
UNIPROTKB\|P82094		1093	TMF1 "TATA element modulatory	0.622	0.524	0.230	2.3e-22
MGI\|MGI:2684999		1091	Tmf1 "TATA element modulatory	0.692	0.584	0.209	5.2e-21
UNIPROTKB\|F1SFP6		1088	TMF1 "Uncharacterized protein"	0.489	0.414	0.224	9.6e-21
DICTYBASE\|DDB_G0274785		1084	DDB_G0274785 "TMF1-like protei	0.474	0.403	0.196	4.2e-17
DICTYBASE\|DDB_G0289719		1419	DDB_G0289719 "SFRS2-interactin	0.474	0.307	0.208	8.2e-19
FB\|FBgn0029912		933	CG4557 [Drosophila melanogaste	0.199	0.197	0.266	1.7e-18

ZFIN\|ZDB-GENE-040801-25 tmf1 "TATA element modulatory factor 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

 Score = 332 (121.9 bits), Expect = 3.5e-26, P = 3.5e-26
 Identities = 168/778 (21%), Positives = 310/778 (39%)

Query:   156 SESAIQNIDSSEPVDNQQQKVTSDLGTSEETESGEAKSGPFEADQIEISSS-LRDESDNV 214
             +ES   + D+ E +D+   +       SE     E    P       I++  L   +++V
Sbjct:   340 TESCGSSSDAFERIDSFSVQSLDSRSVSEVNSDDEI---PGNRTLASITAGPLPAPAESV 396

Query:   215 ANACQSKDEGKKEESNYE--EKSQAEEMIETGSPVQAEVSSTIQAEVGTESSDSQSVSAE 272
                 Q ++EG  E  N +  + ++ EE   + +PV  E    +Q EV  E     ++S++
Sbjct:   397 PQTKQEEEEGMIESMNDQSLDDNEMEESGRSATPVNCEQVDELQ-EVDQEPEPDLTMSSQ 455

Query:   273 ETXXXXXXXXXXXXXXXXXXETVCAPVSPEHGEKDKAVEV-EQQANDSGIVSEEQRLSSE 331
             +                   ETV  P+S E    D   ++ E Q     +    ++  S+
Sbjct:   456 KIDVH---------------ETV-TPLSTEEKPGDSPFQISELQKIIEELSGRLEKRESQ 499

Query:   332 ANVSVSADSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKR 391
               ++VS D    LE+    +K    +L+  +   Q+  DE  + + + E  KA +   +R
Sbjct:   500 L-LAVSKDKA-RLEEECDNLKDEVISLKEESSSVQSLKDEFTQRIADAER-KAQLSCKER 556

Query:   392 KTNDAELETLREEYHQRV---ATLE------RKVYALTKERDTLRREQNKKSDAAALLKE 442
                  E++ LREE   R+    TLE       ++  L +E + L ++Q + S+    L+ 
Sbjct:   557 DIAKKEIKGLREELASRLNSNETLELIKEKEEQIRELLEEGEKLSKQQLQHSNIIKKLRV 616

Query:   443 KDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQ-VEENKVESIKR 501
             K+   +  +A+  +  K+Q  +   ++++     E+E++ +  + KL  V E + + + +
Sbjct:   617 KERESDAQIAKQTKKLKEQEEELKLLQQVMDGKEEIEKQHRENIKKLNAVVERQEKELSK 676

Query:   502 DKTATEKL------LQETIEKHQVELGEQKDYYTXXXXXXXXXXXXXXXXXXXXXXXXXX 555
              +T++E+L      LQ  ++    EL E                                
Sbjct:   677 LQTSSEELQEKSRSLQAALDSSYKELAELHKANASKDSEAQELALSREVQAKEELSLALE 736

Query:   556 XXXXXXXXXXTMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELV 615
                         L   + +LR  L R EQQ   +ED LR +I +LQ+R Q +E R +EL 
Sbjct:   737 KVQEDSRLQQEALANQVADLRVALQRAEQQQAKKEDYLREEISELQQRIQEAETRNQELS 796

Query:   616 TQVPESTRPLLRQIEAIQXXXXXXXXXXXXXXXSLNLRLQXXXXXXXXXXXXXXXVNERL 675
               V  +TRPLLRQIE +Q               +L+ RL                  E L
Sbjct:   797 QSVTSATRPLLRQIENLQATLGAQTASWEKLEKNLSDRLADAQAQLAVSVEKERSATEEL 856

Query:   676 SQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLE 735
                 ++I   E+Q S LR E+ +L   L+ ER R  +   +    + E +  +G   ++ 
Sbjct:   857 LAIRAQITSFESQASLLRQEKGRLQGQLDAERMRREKLEDDLSRERVELENLKGEYARVS 916

Query:   736 EEIKE--LRRKHKQELQEALMHRELLQQEIEREKTARVDLXXXXXXXXXXVSEKTPIARH 793
             E+ K+  L   ++ E+++  + +E  +  + +E     +            +  TP    
Sbjct:   917 EDSKKEKLLLTNQLEMEKMKVEQEKKKCYLAQEALKEKERKSLSLSVTDAPASSTPSLSR 976

Query:   794 TSAFENGXXXXXXXXXXXXXXMEESHFLQAXXXXXXXXXXRKNTVEPTMSPYYVKSMTPS 853
             +S+                   E+S  L              N  E         S    
Sbjct:   977 SSSVSGADHAGLPSSFFSQ--QEDS--LDHSFNTMTMSISGTNLYEAARLGG--GSSVIE 1030

Query:   854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQ---VHVQVVFILRISIEL 908
             + +S L+ +EGE+      +AS+E  R  ++EELV++T +   +  +V  I R+ ++L
Sbjct:  1031 SLQSQLKLREGEITQLQMEIASLERSRTVMSEELVRLTNENDEMESKVKEIPRLKVQL 1088

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB\|G3V9T2 Tmf1 "Protein Tmf1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MUW6 TMF1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NHB9 TMF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|P82094 TMF1 "TATA element modulatory factor" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:2684999 Tmf1 "TATA element modulatory factor 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SFP6 TMF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0274785 DDB_G0274785 "TMF1-like protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0289719 DDB_G0289719 "SFRS2-interacting protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

FB\|FBgn0029912 CG4557 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WVL7	GOGC5_ARATH	No assigned EC number	0.6255	0.9359	0.9016	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		921
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-12
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-12
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-11
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-11
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-10
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	1e-10
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-10
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-10
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-10
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-09
PRK05431		425	PRK05431, PRK05431, seryl-tRNA synthetase; Provisi	1e-09
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-09
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	7e-09
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-08
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-08
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-08
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-08
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	6e-08
pfam12329		74	pfam12329, TMF_DNA_bd, TATA element modulatory fac	6e-08
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-07
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-07
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-07
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	3e-07
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-07
pfam12128		1198	pfam12128, DUF3584, Protein of unknown function (D	3e-07
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	3e-07
pfam12325		121	pfam12325, TMF_TATA_bd, TATA element modulatory fa	4e-07
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-07
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	8e-07
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-06
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-06
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-06
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
pfam12128		1198	pfam12128, DUF3584, Protein of unknown function (D	2e-06
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-06
COG4942		420	COG4942, COG4942, Membrane-bound metallopeptidase	6e-06
pfam12128		1198	pfam12128, DUF3584, Protein of unknown function (D	8e-06
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-05
PRK05771		646	PRK05771, PRK05771, V-type ATP synthase subunit I;	2e-05
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-05
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	4e-05
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	6e-05
PRK04863		1486	PRK04863, mukB, cell division protein MukB; Provis	9e-05
COG0172		429	COG0172, SerS, Seryl-tRNA synthetase [Translation,	1e-04
COG5271		4600	COG5271, MDN1, AAA ATPase containing von Willebran	2e-04
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
COG4942		420	COG4942, COG4942, Membrane-bound metallopeptidase	3e-04
TIGR02680		1353	TIGR02680, TIGR02680, TIGR02680 family protein	3e-04
PRK10246		1047	PRK10246, PRK10246, exonuclease subunit SbcC; Prov	3e-04
pfam00038		312	pfam00038, Filament, Intermediate filament protein	5e-04
TIGR03319		514	TIGR03319, RNase_Y, ribonuclease Y	7e-04
pfam13166		713	pfam13166, AAA_13, AAA domain	7e-04
pfam13514		1118	pfam13514, AAA_27, AAA domain	9e-04
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.001
TIGR02680		1353	TIGR02680, TIGR02680, TIGR02680 family protein	0.001
TIGR04211		198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.001
pfam02403		108	pfam02403, Seryl_tRNA_N, Seryl-tRNA synthetase N-t	0.001
COG3206		458	COG3206, GumC, Uncharacterized protein involved in	0.001
PRK12704		520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.001
PRK04863		1486	PRK04863, mukB, cell division protein MukB; Provis	0.002
TIGR02680		1353	TIGR02680, TIGR02680, TIGR02680 family protein	0.002
PRK10929		1109	PRK10929, PRK10929, putative mechanosensitive chan	0.002
TIGR01843		423	TIGR01843, type_I_hlyD, type I secretion membrane	0.002
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
PRK04863		1486	PRK04863, mukB, cell division protein MukB; Provis	0.003
pfam13514		1118	pfam13514, AAA_27, AAA domain	0.003
TIGR04211		198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.003
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.004
TIGR02680		1353	TIGR02680, TIGR02680, TIGR02680 family protein	0.004
TIGR03185		650	TIGR03185, DNA_S_dndD, DNA sulfur modification pro	0.004
TIGR03007		498	TIGR03007, pepcterm_ChnLen, polysaccharide chain l	0.004

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

 Score = 70.1 bits (172), Expect = 4e-12
 Identities = 86/405 (21%), Positives = 156/405 (38%), Gaps = 72/405 (17%)

Query: 395 DAELETLREEY---HQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVM 451
           D + E   EE     + +  L+  +    ++ + LRRE+ K     ALLKEK E      
Sbjct: 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREY----- 223

Query: 452 AEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVESIKRDKTATEKLLQ 511
            EG EL K++ A E Q   +  Q+  LEEE + L  ++   E ++E I++      K ++
Sbjct: 224 -EGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIK 282

Query: 512 ETIEKHQVELGEQKDYYTNALAAAKEAEELAEARANNEARAELESRLREAGERETMLVQA 571
           +  E+ Q+ + E+       +A+ + +             AE E  L +A ER   L + 
Sbjct: 283 DLGEEEQLRVKEKIGELEAEIASLERSI------------AEKERELEDAEER---LAKL 327

Query: 572 LEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEA 631
             E+ + L+  E+        L R+IE+ ++R         EL                 
Sbjct: 328 EAEIDKLLAEIEE--------LEREIEEERKRRDKLTEEYAEL----------------- 362

Query: 632 IQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISC 691
                             L   L+E + + A + +  +   E+L +    IN L+ ++  
Sbjct: 363 ------------KEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDR 410

Query: 692 LRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADT-------QEGRANQLEEEIKELRRK 744
           L+ E  +L++ L       A    +    +EE +        QE +  QL  ++ +  ++
Sbjct: 411 LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQE 470

Query: 745 H---KQELQEALMHRELLQQEIEREKTARVDLERRASAESAAVSE 786
               K+E          LQ+E+   + A+            AV E
Sbjct: 471 LYDLKEEYDRVEKELSKLQRELAEAE-AQARASEERVRGGRAVEE 514

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|221533 pfam12329, TMF_DNA_bd, TATA element modulatory factor 1 DNA binding	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|192987 pfam12325, TMF_TATA_bd, TATA element modulatory factor 1 TATA binding	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|235316 PRK04863, mukB, cell division protein MukB; Provisional	Back alignment and domain information

>gnl\|CDD\|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233973 TIGR02680, TIGR02680, TIGR02680 family protein	Back alignment and domain information

>gnl\|CDD\|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	Back alignment and domain information

>gnl\|CDD\|200948 pfam00038, Filament, Intermediate filament protein	Back alignment and domain information

>gnl\|CDD\|188306 TIGR03319, RNase_Y, ribonuclease Y	Back alignment and domain information

>gnl\|CDD\|221952 pfam13166, AAA_13, AAA domain	Back alignment and domain information

>gnl\|CDD\|205692 pfam13514, AAA_27, AAA domain	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|233973 TIGR02680, TIGR02680, TIGR02680 family protein	Back alignment and domain information

>gnl\|CDD\|234501 TIGR04211, SH3_and_anchor, SH3 domain protein	Back alignment and domain information

>gnl\|CDD\|217020 pfam02403, Seryl_tRNA_N, Seryl-tRNA synthetase N-terminal domain	Back alignment and domain information

>gnl\|CDD\|225747 COG3206, GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|237177 PRK12704, PRK12704, phosphodiesterase; Provisional	Back alignment and domain information

>gnl\|CDD\|235316 PRK04863, mukB, cell division protein MukB; Provisional	Back alignment and domain information

>gnl\|CDD\|233973 TIGR02680, TIGR02680, TIGR02680 family protein	Back alignment and domain information

>gnl\|CDD\|236798 PRK10929, PRK10929, putative mechanosensitive channel protein; Provisional	Back alignment and domain information

>gnl\|CDD\|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|235316 PRK04863, mukB, cell division protein MukB; Provisional	Back alignment and domain information

>gnl\|CDD\|205692 pfam13514, AAA_27, AAA domain	Back alignment and domain information

>gnl\|CDD\|234501 TIGR04211, SH3_and_anchor, SH3 domain protein	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233973 TIGR02680, TIGR02680, TIGR02680 family protein	Back alignment and domain information

>gnl\|CDD\|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD	Back alignment and domain information

>gnl\|CDD\|234084 TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant protein, PEP-CTERM locus subfamily	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		921
KOG4673		961	consensus Transcription factor TMF, TATA element m	100.0
PF12329		74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	99.54
KOG4673		961	consensus Transcription factor TMF, TATA element m	99.19
PRK02224		880	chromosome segregation protein; Provisional	99.16
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	99.02
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	98.8
PRK02224		880	chromosome segregation protein; Provisional	98.8
PRK03918		880	chromosome segregation protein; Provisional	98.68
PF00038		312	Filament: Intermediate filament protein; InterPro:	98.64
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	98.58
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	98.54
PF12325		120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	98.54
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	98.52
PRK03918		880	chromosome segregation protein; Provisional	98.48
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	98.22
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	98.18
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	98.14
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	98.1
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	98.08
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	98.02
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	97.96
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	97.89
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	97.88
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	97.85
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.76
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	97.76
KOG0971		1243	consensus Microtubule-associated protein dynactin	97.61
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	97.61
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.6
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	97.39
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	97.37
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.33
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	97.25
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.21
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	97.19
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	97.16
KOG0996		1293	consensus Structural maintenance of chromosome pro	97.12
PF09755		310	DUF2046: Uncharacterized conserved protein H4 (DUF	97.11
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	97.03
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	96.94
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	96.92
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	96.9
PRK04778		569	septation ring formation regulator EzrA; Provision	96.87
KOG4643		1195	consensus Uncharacterized coiled-coil protein [Fun	96.82
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	96.77
PF00038		312	Filament: Intermediate filament protein; InterPro:	96.73
PRK04863		1486	mukB cell division protein MukB; Provisional	96.69
PF05622		713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.68
PRK11637		428	AmiB activator; Provisional	96.61
PRK11637		428	AmiB activator; Provisional	96.6
COG4942		420	Membrane-bound metallopeptidase [Cell division and	96.59
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	96.58
KOG0996		1293	consensus Structural maintenance of chromosome pro	96.38
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	96.32
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.16
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	96.15
PRK04778		569	septation ring formation regulator EzrA; Provision	96.0
PRK09039		343	hypothetical protein; Validated	95.99
PRK11281		1113	hypothetical protein; Provisional	95.94
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	95.82
PF06160		560	EzrA: Septation ring formation regulator, EzrA ; I	95.72
PRK04863		1486	mukB cell division protein MukB; Provisional	95.64
PF05557		722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	95.32
COG4942		420	Membrane-bound metallopeptidase [Cell division and	95.14
PRK10929		1109	putative mechanosensitive channel protein; Provisi	95.12
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	95.04
PF06160		560	EzrA: Septation ring formation regulator, EzrA ; I	94.83
TIGR03007		498	pepcterm_ChnLen polysaccharide chain length determ	94.76
PRK01156		895	chromosome segregation protein; Provisional	94.67
TIGR01005		754	eps_transp_fam exopolysaccharide transport protein	94.56
KOG1853		333	consensus LIS1-interacting protein NUDE [Cytoskele	94.53
PRK09039		343	hypothetical protein; Validated	94.47
KOG0963		629	consensus Transcription factor/CCAAT displacement	94.4
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	94.35
KOG1003		205	consensus Actin filament-coating protein tropomyos	94.29
PF05557		722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	94.23
PHA02562		562	46 endonuclease subunit; Provisional	94.04
KOG2129		552	consensus Uncharacterized conserved protein H4 [Fu	93.71
PF14662		193	CCDC155: Coiled-coil region of CCDC155	93.69
COG1842		225	PspA Phage shock protein A (IM30), suppresses sigm	93.68
KOG4643		1195	consensus Uncharacterized coiled-coil protein [Fun	93.68
TIGR02680		1353	conserved hypothetical protein TIGR02680. Members	93.64
PHA02562		562	46 endonuclease subunit; Provisional	93.55
COG0419		908	SbcC ATPase involved in DNA repair [DNA replicatio	93.49
TIGR02680		1353	conserved hypothetical protein TIGR02680. Members	93.13
KOG2129		552	consensus Uncharacterized conserved protein H4 [Fu	93.12
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	92.93
PF09730		717	BicD: Microtubule-associated protein Bicaudal-D; I	92.58
PF15450		531	DUF4631: Domain of unknown function (DUF4631)	92.5
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	92.23
PF05483		786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	91.96
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	91.9
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	91.86
PF06705		247	SF-assemblin: SF-assemblin/beta giardin	91.57
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	91.43
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	91.17
PF04849		306	HAP1_N: HAP1 N-terminal conserved region; InterPro	91.11
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	91.06
KOG0971		1243	consensus Microtubule-associated protein dynactin	91.05
PF10473		140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	91.05
PF05622		713	HOOK: HOOK protein; InterPro: IPR008636 This famil	91.04
PRK01156		895	chromosome segregation protein; Provisional	90.93
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	90.8
COG0419		908	SbcC ATPase involved in DNA repair [DNA replicatio	90.79
PRK11281		1113	hypothetical protein; Provisional	90.4
PF04849		306	HAP1_N: HAP1 N-terminal conserved region; InterPro	90.22
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	89.71
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	89.6
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	89.23
TIGR03017		444	EpsF chain length determinant protein EpsF. Sequen	89.08
KOG0980		980	consensus Actin-binding protein SLA2/Huntingtin-in	89.04
TIGR03007		498	pepcterm_ChnLen polysaccharide chain length determ	88.32
KOG0999		772	consensus Microtubule-associated protein Bicaudal-	88.28
TIGR01843		423	type_I_hlyD type I secretion membrane fusion prote	87.76
PF12325		120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	87.72
PF04912		388	Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit	87.57
PF05010		207	TACC: Transforming acidic coiled-coil-containing p	87.12
PF05010		207	TACC: Transforming acidic coiled-coil-containing p	86.92
PF10498		359	IFT57: Intra-flagellar transport protein 57 ; Inte	86.47
PRK10884		206	SH3 domain-containing protein; Provisional	86.33
PF13514		1111	AAA_27: AAA domain	85.77
PF10168		717	Nup88: Nuclear pore component; InterPro: IPR019321	85.52
KOG0963		629	consensus Transcription factor/CCAAT displacement	85.32
PF15619		194	Lebercilin: Ciliary protein causing Leber congenit	85.2
PF09728		309	Taxilin: Myosin-like coiled-coil protein; InterPro	84.49
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	84.48
PF10168		717	Nup88: Nuclear pore component; InterPro: IPR019321	84.34
PTZ00121		2084	MAEBL; Provisional	83.14
PF10212		518	TTKRSYEDQ: Predicted coiled-coil domain-containing	83.07
PLN03229		762	acetyl-coenzyme A carboxylase carboxyl transferase	82.72
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	82.38
PF12761		195	End3: Actin cytoskeleton-regulatory complex protei	82.17
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	81.88
KOG0018		1141	consensus Structural maintenance of chromosome pro	81.72
PF09789		319	DUF2353: Uncharacterized coiled-coil protein (DUF2	80.24
KOG0982		502	consensus Centrosomal protein Nuf [Cell cycle cont	80.15
PF08614		194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	80.04

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]	Back alignment and domain information

Probab=100.00  E-value=3.9e-116  Score=979.79  Aligned_cols=851  Identities=50%  Similarity=0.632  Sum_probs=677.9

Q ss_pred             CCccCC-CCCCCCCCchhhhhhhchHhHHHHHHhhhhhcCccccccccCCCCCCCCCCCccc-----------hhhhccc
Q 002440            1 MAWFSG-KVSLGNFPDLAGAVNKFSESVKNIEKNFDTALGFDEKAEKSAKPETSSSNEGLWP-----------VMSFMGH   68 (921)
Q Consensus         1 ma~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~   68 (921)
                      |+||+| |++||+|+|+.|++|++..++++|.++|+.++||.++++.+..+.    ++.+||           ||+||||
T Consensus         1 MsWF~~Ak~sl~~~lDiq~~~~~~~~~~k~~p~~~~~~~Gg~d~s~~~~~~n----a~~~~Pp~a~tka~~~Pv~~~~~~   76 (961)
T KOG4673|consen    1 MSWFSGAKVSLGGFLDIQGAVNKFQESVKNIPKNFDNALGGDDKSDSAAEDN----ASSMWPPAADTKALFDPVMSFMGN   76 (961)
T ss_pred             CchhhhhhhhhcccccccccchhhhhcccCCcccCCcccCCCCccccccccc----CCCCCCCCCCcccccccHHHhccc
Confidence            999999 999999999999999999999999999999999999999988876    667787           9999999


Q ss_pred             CCCCCCCC-cCCCCCCCCCCCCCcccccccccccccccccccchhhhccCC---CCCCcCC-CCCcccccccchhccCCC
Q 002440           69 KSEGSSPT-ESSGKPQTPQQQSKPEEKVGVETERSVHSATGEVYADKQKAS---PKTEKDD-EHPDTAENLDFVVSEHGK  143 (921)
Q Consensus        69 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~  143 (921)
                      .+.++|++ +.+--...|-+-+-|++..+     ++|-...+ ..++.-++   +..+-|+ ..|.+.+   .|+.++..
T Consensus        77 t~f~~P~~~~~~vvt~pPs~~~~peee~~-----S~~~g~~q-s~~~ds~~~~s~~~~a~~~~sP~~~e---~~~~vP~v  147 (961)
T KOG4673|consen   77 TSFEKPDTLEDSVVTEPPSQIEQPEEEAG-----SVKLGTEQ-SVSVDSNKETSVRREADQADSPEVTE---TVVLVPKV  147 (961)
T ss_pred             ccccCcccccccccccCCCcccCchhhcc-----cchhccch-hhhhhhhhhhcccccccCCCCCCCcc---ccCcCccc
Confidence            99999733 22222233333333332211     22222221 11111111   1112222 1222222   25555555


Q ss_pred             CCCCCCcccCCCCchhhhccCCCCccchhhhhhhccCCCCcccccccccCCCC-----------ccccccccccccccCc
Q 002440          144 VDSESNIVPNDPSESAIQNIDSSEPVDNQQQKVTSDLGTSEETESGEAKSGPF-----------EADQIEISSSLRDESD  212 (921)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~  212 (921)
                      .+..|+++.-..++-..+..+++       ++.++-...-..++.+..-+.|.           +-+.-|+++..+.+-.
T Consensus       148 ~~~~Se~~lE~is~ts~qt~~~~-------~~~~~l~P~~~ps~p~S~~s~~~~~tSd~ee~d~Ed~~~e~~~~~r~~t~  220 (961)
T KOG4673|consen  148 DEPQSEILLEEISETSLQTPESS-------GYKTSLQPNEKPSMPASQDSQPEQPTSDAEESDPEDSEAEEVTVERKDTV  220 (961)
T ss_pred             chhhhHHHHHHHHhhhccCcccc-------ccccccCCCCCCCCCccccccCCCCcchhhhcCcccchhhhhhhhhcccc
Confidence            55555554222222222211111       01111000000001111111111           1123344554444444


Q ss_pred             ccccccccccccccccchhHHhhhhhhhhccCCCcccccchhhhhccC---CCCCCCccchhhhhhhhhccccccCCCCc
Q 002440          213 NVANACQSKDEGKKEESNYEEKSQAEEMIETGSPVQAEVSSTIQAEVG---TESSDSQSVSAEETERVRELLSSSASSPK  289 (921)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (921)
                      ...+.....++.++.++....++.+.....+.|+..||..+|+.+..|   +.+.++|+..++   ..+.+.+++|.+||
T Consensus       221 hs~~s~~~mk~~~~~~~~~a~~~~n~~~d~~~Ss~~FE~i~~~~~~~gkSr~~s~v~~~d~~~---~s~~s~~eiiin~n  297 (961)
T KOG4673|consen  221 HSPVSDGQMKITYMDETTNAQEILNENLDGRTSSKNFEVIPDINHVNGKSRIESPVAHPDLIF---ESDGSPYEIIINKN  297 (961)
T ss_pred             cCccchhhHHHHHHHhhhhhhhhhccccccccccchhhhchhhhhccCCCCCCCCCCChhhhc---cCCCCcceeecCCC
Confidence            444555667788999999999999999999999999999999999884   455555555444   44566778888887


Q ss_pred             ccccc------ccccCCCCCCCccchhhhhhhccccCccchhhhccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 002440          290 AVSET------VCAPVSPEHGEKDKAVEVEQQANDSGIVSEEQRLSSEANVSVSADSVCELEKLKREMKMMETALQGAAR  363 (921)
Q Consensus       290 ~~s~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ds~~elekL~~ei~~le~~l~~a~r  363 (921)
                      +.|++      ++++|++.-+......+...          +++-++..|.+++.+-+++|+|++++|++|+.+|+  +|
T Consensus       298 g~SsT~e~ser~s~~v~~el~~~~~~~e~~e----------s~Rs~s~~n~~~~d~~q~eLdK~~~~i~~Ln~~le--aR  365 (961)
T KOG4673|consen  298 GRSSTDEISERISDFVSRELDSRLDTSELNE----------SQRSSSATNVSDSDDVQLELDKTKKEIKMLNNALE--AR  365 (961)
T ss_pred             CCccccccccccchHHHHHhccchhhHHhhh----------ccCCCCCccccCchhHHHHHHHHHHHHHHHHHHHH--HH
Confidence            76654      56667766666665555443          56667788888886669999999999999999999  56


Q ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhHHH----
Q 002440          364 QAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQN--KKSDAA----  437 (921)
Q Consensus       364 q~qsks~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALErKLQ~L~KERDaLRre~a--k~s~aa----  437 (921)
                      ++|.++.++++++-.+.++....+.++.+++++++..|+++|+|||++||+|||++|||||+||++.+  +...++    
T Consensus       366 eaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~  445 (961)
T KOG4673|consen  366 EAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLK  445 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Confidence            77777788888887888888888999999999999999999999999999999999999999999988  333333    


Q ss_pred             HHhhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHhHHhHHHHHHhhHHHHHHHHHHH
Q 002440          438 ALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKG---LVTKLQVEENKVESIKRDKTATEKLLQETI  514 (921)
Q Consensus       438 a~LaEKDEqIa~LMEEGEKLSKkQlq~e~iIKKLRakikE~Eee~~~---Lk~KlE~e~~~le~~kr~~~a~EK~lqE~l  514 (921)
                      +.|+||||||++||+||+||||+|+++++||||||+++++.+.-...   +-.+|+.+..++..+.+.++++||.+++.+
T Consensus       446 DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I  525 (961)
T KOG4673|consen  446 DELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETI  525 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            48899999999999999999999999999999999999998854444   446889999999999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH--HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440          515 EKHQVELGEQKDYYTN--ALAAAKEAEELAEARANNEARAEL--ESRLR--EAGERETMLVQALEELRQTLSRTEQQAVF  588 (921)
Q Consensus       515 Ek~qkEL~a~k~~~~~--~L~aAKe~a~~AEarA~~Ea~~~L--e~~lk--EaeErEe~L~~qI~DLRekLeRaee~Aa~  588 (921)
                      .+++.++..++.+|.+  .+.++.+...+|+.+++.+++-.|  +.+++  ++++++.+|.+||.|||.+|.++++.+++
T Consensus       526 ~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aar  605 (961)
T KOG4673|consen  526 EKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAAR  605 (961)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999985  566677777778888888887655  34555  78888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440          589 REDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERE  668 (921)
Q Consensus       589 rEdeLR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~eRE  668 (921)
                      ||++||+||.+|++|||++|.||+++++.||.+|||||||||+||.+++.++.+|+..|++|.+||.+.+..++.++.+|
T Consensus       606 rEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~e  685 (961)
T KOG4673|consen  606 REDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEE  685 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 002440          669 RSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQE  748 (921)
Q Consensus       669 re~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE~Er~r~~~~rqe~~aakee~~~qE~r~~qLEeel~~l~~k~~q~  748 (921)
                      +..++.+..++-.+.....|++++|+|+.+|++.|+.+++|+.+.+++|.++++++..+++|..+|+++++.++.+|+++
T Consensus       686 qgekqElL~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~~q~  765 (961)
T KOG4673|consen  686 QGEKQELLSLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKHKQE  765 (961)
T ss_pred             hhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhhhccccCcccccccCcCCCCccccccccCcCCcchhhhhhhhccccc
Q 002440          749 LQEALMHRELLQQEIEREKTARVDLERRASAESAAVSEKTPIARHTSAFENGSLSRKLSSASSLGSMEESHFLQASLDSS  828 (921)
Q Consensus       749 l~e~~~~~~llq~qlE~EK~~r~e~Er~k~~~~~a~~eqt~~~~~~s~~~~~~~~~~lS~ssSi~s~~~s~flQ~s~dss  828 (921)
                      ++..+-+-++.+..++.+++-++++||+-.                   . .+++|.+|..+|+++.+.+ +.+.+|...
T Consensus       766 lq~~ll~ve~~~k~~e~~~~~~~~lers~a-------------------~-i~Ssp~~s~~~SgSnee~a-g~~~~f~~d  824 (961)
T KOG4673|consen  766 LQEVLLHVELIQKDLEREKASRLDLERSTA-------------------R-INSSPVSSQLPSGSNEEIA-GQNSAFEND  824 (961)
T ss_pred             hhHHHHHHHHHHHHhhhCHHHHhhcccccC-------------------c-cCCCCchhhCCCCchHhHh-cccchhhcc
Confidence            999988888888888888877667766521                   1 2466778888889998877 888999987


Q ss_pred             ccccccCCCC--CCCCchhhhccCCh-----HHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHh
Q 002440          829 DSLSDRKNTV--EPTMSPYYVKSMTP-----SAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQV---HVQV  898 (921)
Q Consensus       829 d~~~~~~~~g--~~s~S~y~~~s~s~-----s~lQSqLKqREGEIaqLQ~el~~lE~tR~~LaEELVkLT~q~---Ee~v  898 (921)
                      |-..+| +||  +.+|+|||+.++++     +.|++-|+||||||+||||+|++||.+|++|++|||+||++|   ++++
T Consensus       825 d~s~~~-s~gqq~~~~~~~hl~~~~~nttt~eh~eall~QreGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~  903 (961)
T KOG4673|consen  825 DFSEKR-SMGQQEATMSPYHLKSITPNTTTSEHYEALLRQREGELTHLQTELASLESIRSSLAEELVKLTAECEKLREKA  903 (961)
T ss_pred             chhhhh-cCCCCCcccchhHHhhhcCCCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777 999  44777988777644     589999999999999999999999999999999999999999   6789


Q ss_pred             hhhhhhhhhh
Q 002440          899 VFILRISIEL  908 (921)
Q Consensus       899 ~~i~~l~~~~  908 (921)
                      +.||+|+-+|
T Consensus       904 ~~~p~~~~~l  913 (961)
T KOG4673|consen  904 DRVPGIKAEL  913 (961)
T ss_pred             HhhHHHHHHH
Confidence            9999999876

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures	Back alignment and domain information

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>PRK11281 hypothetical protein; Provisional	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>PRK10929 putative mechanosensitive channel protein; Provisional	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site	Back alignment and domain information

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family	Back alignment and domain information

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]	Back alignment and domain information

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]	Back alignment and domain information

>PF14662 CCDC155: Coiled-coil region of CCDC155	Back alignment and domain information

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]	Back alignment and domain information

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]	Back alignment and domain information

>TIGR02680 conserved hypothetical protein TIGR02680	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR02680 conserved hypothetical protein TIGR02680	Back alignment and domain information

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []	Back alignment and domain information

>PF15450 DUF4631: Domain of unknown function (DUF4631)	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>PF06705 SF-assemblin: SF-assemblin/beta giardin	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]	Back alignment and domain information

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK11281 hypothetical protein; Provisional	Back alignment and domain information

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>TIGR03017 EpsF chain length determinant protein EpsF	Back alignment and domain information

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]	Back alignment and domain information

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily	Back alignment and domain information

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family	Back alignment and domain information

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []	Back alignment and domain information

>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []	Back alignment and domain information

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules	Back alignment and domain information

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules	Back alignment and domain information

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms	Back alignment and domain information

>PRK10884 SH3 domain-containing protein; Provisional	Back alignment and domain information

>PF13514 AAA_27: AAA domain	Back alignment and domain information

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs	Back alignment and domain information

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]	Back alignment and domain information

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease	Back alignment and domain information

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs	Back alignment and domain information

>PTZ00121 MAEBL; Provisional	Back alignment and domain information

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif	Back alignment and domain information

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function	Back alignment and domain information

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		921
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-19
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-18
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	2e-17
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	6e-07
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	7e-05
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-04
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-16
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-15
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-09
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-08
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	3e-09
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-06
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	8e-04
2ycu_A		995	Non muscle myosin 2C, alpha-actinin; motor protein	4e-08
2dq0_A		455	Seryl-tRNA synthetase; coiled-coil, homodimer, str	1e-07
1ses_A		421	Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A	4e-06
2dq3_A		425	Seryl-tRNA synthetase; coiled-coil, homodimer, str	1e-05
3err_A		536	Fusion protein of microtubule binding domain from	1e-05
1wle_A		501	Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo	2e-05
1sjj_A		863	Actinin; 3-helix bundle, calponin homology domain,	1e-04
2i1j_A		575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	1e-04
2i1j_A		575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	3e-04
3qne_A		485	Seryl-tRNA synthetase, cytoplasmic; amino acid bio	2e-04
1w1w_A		430	Structural maintenance of chromosome 1; cohesin, c	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 91.5 bits (226), Expect = 6e-19
 Identities = 72/601 (11%), Positives = 182/601 (30%), Gaps = 138/601 (22%)

Query: 344 LEKLKREM--KMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETL 401
            +        K ++   +    + +   D I    +       +   L  K         
Sbjct: 26  EDAFVDNFDCKDVQDMPKSILSKEEI--DHIIMSKDAVSGTLRLFWTLLSKQE------- 76

Query: 402 REEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQ 461
            E   + V  + R  Y        ++ EQ + S    +  E+    +++  + +  +K  
Sbjct: 77  -EMVQKFVEEVLRINYKFLMSP--IKTEQRQPSMMTRMYIEQ---RDRLYNDNQVFAKYN 130

Query: 462 AAQEAQIRKLRAQIRELEEEKK---------GLVTKLQVEENKVESIKRDKT--ATEKLL 510
            ++     KLR  + EL   K          G                  KT  A +  L
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSG------------------KTWVALDVCL 172

Query: 511 QETIEKH---QVELGEQKDYYTNALAAAKEAEELAEARANNEARAELESRLREAGERETM 567
              ++     ++       ++ N L      E + E       +  ++       +  + 
Sbjct: 173 SYKVQCKMDFKI-------FWLN-LKNCNSPETVLEMLQKLLYQ--IDPNWTSRSDHSSN 222

Query: 568 LVQALEELRQTLSRTEQQAVFREDML-RRDIEDLQRRYQASERRCEELVT--------QV 618
           +   +  ++  L R  +   +   +L   ++++  + + A    C+ L+T         +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-AKAWNAFNLSCKILLTTRFKQVTDFL 281

Query: 619 PESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQE--AEAKAAASEERERSVN---- 672
             +T   +         T    E  + + + L+ R Q+   E           + N    
Sbjct: 282 SAATTTHISLDHHSMTLT--PDEVKSLLLKYLDCRPQDLPREVL---------TTNPRRL 330

Query: 673 ----ERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEY--LA-----AK 721
               E +   L+  +  +  ++C +     +  SL       AE R+ +  L+     A 
Sbjct: 331 SIIAESIRDGLATWDNWK-HVNCDKLTTI-IESSLNV--LEPAEYRKMFDRLSVFPPSAH 386

Query: 722 EEADT-----QEGRANQLEEEIKELRR-----KHKQELQEALMHREL-LQQEIEREKTA- 769
                      +   + +   + +L +     K  +E   ++    L L+ ++E E    
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446

Query: 770 RVDLERRASAESAAVSEKTP----------IARHTSAFENG---SLSRKLSSASSLGSME 816
           R  ++     ++    +  P          I  H    E+    +L R +          
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV--------FL 498

Query: 817 ESHFLQASLDSSDSLSDRKNTVEPTMS--PYYVKSMTPSAFESILRQKEGELASYMSRLA 874
           +  FL+  +    +  +   ++  T+    +Y   +  +  +    +    +  ++ ++ 
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN--DPKYERLVNAILDFLPKIE 556

Query: 875 S 875
            
Sbjct: 557 E 557

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995	Back alignment and structure

>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Length = 455	Back alignment and structure

>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Length = 421	Back alignment and structure

>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Length = 425	Back alignment and structure

>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} Length = 536	Back alignment and structure

>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Length = 501	Back alignment and structure

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863	Back alignment and structure

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575	Back alignment and structure

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575	Back alignment and structure

>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Length = 485	Back alignment and structure

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00