Citrus Sinensis ID: 002470

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------92
Protein Sequence
MSSLSIHRQRDRGGGSTGTKAVTPNSVSYKNPSPGLKKSSSGKENPKPITRSQKPVIKSVPRVEKAAVESGDSRIRRSTSSAPRGRSQSPSEFIRVYSDLKKDRVSRVSVERKGSRDSSVKGAELGFNEKRGFSELKSDKERKLSGVGVLGSNYNKGVNLGSNLGKSSGISVTSNFVSRNEKRSSDVGLKVEKYDKVDVLNSENRLEKIDRSVGLGLNESDEKISRDSKVSETLKEKSLSEEGLSTKVGVKFPSKLHEKLTFLEGKVKRIQSDIKRTKEMLDMNNPDATKLILSDIQEKISGIEKAMGNVAGDSGVKIVGSKGVGKNVEGSKIVEMSQDKIVDGVKGLVKGLKSEELEARLFPHHKLLRNRTSKPASESSQSDELNDEGARSDLKVEEKLLSPIEENPIALQFLASLNKDENKVSAKSGLVDLECDEVFETDEAAKSGEKGLSCMFSGKGEAELELTSDERLDEFDDQENRQAFVIDEGIEDTCTYQLNEIGQRTSTGGWFVSEGESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTKDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAETISLWDVNSLNPQTLLSVSSCGRKISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCTPDSINILDFRHPAGIGLKIPKFGVNAQSVFSRGDSIFLGCCNVRSTGKKQPSSQVQQFSLRKQRLMNTYSLPESNAHSYHSAITQVWGNSNLVMGISGEGLFVFDALSNDGFQSFASDNSSIQKVREIIGPDDLFAPSFDYLASRVLLISRDRPALWRHLP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHcccccccccccccccccccccccHHHHHHHccccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHccccccccccccHHHHHHHHHcccccccccEEEEccccEEEccccccccccccccccccccccccccccccccccEEEEEccccccccccEEEEEccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccEEEEccccccEEEEEEcccccEEEEEEEcccEEEEcccccccccccccEEEEEccEEEEEEccccccccEEEEcccccEEEEEEEEccccccccccccccccccccccccEEEcccccEEEEccccccccccccccccccEEEEEcccEEEEEccEEccccccccccccEEcEEccccEEEEEccccccccccccccEEEccccccEEEEEcccEEEEEcccccccccccccccccccccEEccccccccccccccccEEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHcccccccccEEEcccccccccccHHHHccccccccccccccccccEEcccccccHHcccccccEEEEEcccccccccccHHHHHHHHHHHHHccccEEEEEccccccccccccEEcccccccccEEEEEcccccccccEEcccccccccccccccccccccccccccccccccccEEEEEEccccccEccccccHEEEccccccccccccccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHccHccccccccHccccccHHHHHHHHccHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccHHccccccEEEEEccccccccccccccccccccEEEEEEccHHHHHHHHHHccccEEEEccccHHHHHHHcccccccccccEEEEcccEEEEEcccccccEEEEccccccccccccccccccccccEEEEEccccccccccEEEEEEcccccccccccccccccEEEEEEEEccccccccEEEcccccccccccccHHHHcccccccEEEcccccEEEEEcccccEEEEEEEccccEEEEEEEcccEEEEccccccEEccccEEEEEEEEEEEEEEccccccccEEEEcccccEEEEEEEEccccccccccEEEEcccccccccccEEccccEEEEEcccccccccEcccccccEEEEEEcccEEEEEccccEEccccccccEEEEEEEEcccEEEEEEcccccccccHcHHHEccccccEEEEEccccEEEEcccHHccccEEEccccccccEEEEccccccccccccccccEEEEEEccccHHHHccc
Coil and Loop (DISEMBL)
msslsihrqrdrgggstgtkavtpnsvsyknpspglkksssgkenpkpitrsqkpviksvprVEKAavesgdsrirrstssaprgrsqspsEFIRVYSDLKkdrvsrvsverkgsrdssvkgaelgfnekrgfselksdkerklsgvgvlgsnynkgvnlgsnlgkssgisvtsnfvsrnekrssdvglkvekydkvdvlnsenrLEKIDrsvglglnesdekisrdsKVSETLKekslseeglstkvgvkfpsklHEKLTFLEGKVKRIQSDIKRTKEMldmnnpdaTKLILSDIQEKISGIEKAmgnvagdsgvkivgskgvgknvegskiVEMSQDKIVDGVKGLVKGLkseelearlfphhkllrnrtskpasessqsdelndegarsDLKVEEKLlspieenpIALQFLASLNKdenkvsaksglvdlecdevfetdeaaksgekglscmfsgkgeaeleltsderldefddqenrqafvidegiEDTCTYQLNEigqrtstggwfvsegesvllahddgscsyyditncedkavykpptavsssiwrDCWIiraagadgcsGRYVVAASagnsldsgfcswdfytKDVRAFhiegegkttsrtvlgplpnnniyrrnafssvlvpethqwwykpcgpliasaassqrVVTVYDIRDGEQIMQWevqkpvltmdyssplqwrnrgkLVVAEAETIslwdvnslnpqtllsvsscgrkisalhvnntdaelgggvrqrvssaeaegndgvfctpdsinildfrhpagiglkipkfgvnaqsvfsrgdsiflgccnvrstgkkqpssqvQQFSLRKQRLmntyslpesnahsyHSAITQVWgnsnlvmgisGEGLFVFDAlsndgfqsfasdnssIQKVREiigpddlfapsfDYLASRVLLIsrdrpalwrhlp
Flexible Loop (DISEMBL)
msslsihrqrdrgggstgtkavtpnsvsyknpspglkksssgkenpkpitrsqkpviksvprvekaavesgdsrirrstssaprgrsqspsefirvysdlkkdrvsrvsverkgsrdssvkgaelgfnekrgfselksdkerklsgvgvlgsnynKGVNLGSNLGKSSGISVTsnfvsrnekrssdvglkvekydkvdvlnsenrlekidrsvglglnesdekisrdskvsetlkekslseeglstkvgvkfpsklhekltflegkvkriQSDIKRtkemldmnnpdATKLILSDIQEKISGIEKAMgnvagdsgvkivgskgvgknvegskivemsqdkivdGVKGLVKGLKSEELEarlfphhkllrnrtskpasessqsdelndegarsDLKVEEKLLSPIEENPIALQFLASLNKDENKVSAKSGLVDLECDEVFETDeaaksgekglscmFSGKGEAELELTSDERLDEFDDQENRQAFVIDEGIEDTCTYQLNEIGQRTSTGGWFVSEGESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTKDVRAFHIegegkttsrtvlgplpnnnIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAETislwdvnslnPQTLLSVSSCGRKISALHvnntdaelggGVRQRVSSaeaegndgvfCTPDSINILDFRHPAGIGLKIPKFGVNAQSVFSRGDSIFLGCCNVRstgkkqpssqvqQFSLRKQRLMNTYSLPESNAHSYHSAITQVWGNSNLVMGISGEGLFVFDALSNDGFQSFASDNSSIQKVREIIGPDDLFAPSFDYLASRVLLIsrdrpalwrhlp
Low Complexity Region (SEG)
MSSLSIHRQRDRGGGSTGTKAVTPNSVSYknpspglkksssgkENPKPITRSQKPVIKSVPRVEKAAVESGDSRIRRSTSSAPRGRSQSPSEFIRVYSDLKKDRVSRVSVERKGSRDSSVKGAELGFNEKRGFSELKSDKERKLSGVGVLGSNYNKGVNLGSNLGKSSGISVTSNFVSRNEKRSSDVGLKVEKYDKVDVLNSENRLEKIDRSVGLGLNESDEKISRDskvsetlkekslseeglstkVGVKFPSKLHEKLTFLEGKVKRIQSDIKRTKEMLDMNNPDATKLILSDIQEKISGIEKAMGNVAgdsgvkivgskgvgkNVEGSKIVEMSQDKIVDGVKGLVKGLKSEELEARLFPHHKLLRNRTSKPASESSQSDELNDEGARSDLKVEEKLLSPIEENPIALQFLASLNKDENKVSAKSGLVDLECDEVFETDEAAKSGEKGLSCMFSGKGEAELELTSDERLDEFDDQENRQAFVIDEGIEDTCTYQLNEIGQRTSTGGWFVSEGESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTKDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAETISLWDVNSLNPQTLLSVSSCGRKISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCTPDSINILDFRHPAGIGLKIPKFGVNAQSVFSRGDSIFLGCCNVRSTGKKQPSSQVQQFSLRKQRLMNTYSLPESNAHSYHSAITQVWGNSNLVMGISGEGLFVFDALSNDGFQSFASDNSSIQKVREIIGPDDLFAPSFDYLASRVLLISRDRPALWRHLP
Disordered region (IsUnstruct)
***************************************************************************************************************************************************************************************************************************************************************LHEKLTFLEGKV**********************KLILSDIQEKISGIEKAMGNVAGDSGVKIVGSKGVGKNV***KIVEMSQDKIVDGVKGLVKGL********************************************************IALQFLA**************LVDLECDEV*******************************************QAFVIDEGIEDTCTYQLNEIGQRTSTGGWFVSEGESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTKDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAETISLWDVNSLNPQTLLSVSSCGRKISALHVNNTDAEL***************NDGVFCTPDSINILDFRHPAGIGLKIPKFGVNAQSVFSRGDSIFLGCCNVR********************************HSYHSAITQVWGNSNLVMGISGEGLFVFDALSNDGFQSFASDNSSIQKVREIIGPDDLFAPSFDYLASRVLLISRDRPALW****
Disordered Region (DISOPRED)
****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************QLNEIGQRTSTGGWFVSEGESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTKDVRA***************************************WWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAETISLWDVNSLNPQTLLSVSSCGRKISALHVNNTDAELGGG***************VFCTPDSINILDFRHPAGIGLKIPKFGVNAQSVFSRGDSIFLGCCN****************SLRKQRLMNTYSLPESNAHSYHSAITQVWGNSNLVMGISGEGLFVFDALSNDGFQSFASDNSSIQKVREIIGPDDLFAPSFDYLASRVLLISRDRPALW*HL*
Disordered Region (DISEMBL)
*******************KAVTPNSVSYK*********************SQKPVIKS********************************EFIRVYSDLKK******************KGAELGFNEKRGFSELKSDKERKLSGVGVLGSNYNKGVNLGSNLGKSSGISVTSNF**********VGLKVEKYDKVDVLNSENRLEKIDRSVGLGLNE**********************EGLSTKVGVKFPSKLHEKLTFLEGKVKRIQSDIKRTKEMLDMNNPDATKLILSDIQEKISGIEKAMGNVAGDSGVKIVGSKGVGKNVEGSKIVEMSQDKIVDGVKGLVKGLKSEELEARLFPHHKLLRN*********************SDLKVEEKLLSPIEENPIALQFLASLNKDENKVSAKSGLVDLECDEVFETDEAAKSGEKGLSCMFSGKGEAELELTSDERLDEFDDQENRQAFVIDEGIEDTCTYQLNEIGQRTSTGGWFVSEGESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTKDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAETISLWDVNSLNPQTLLSVSSCGRKISALHVNNTDAELGG************GNDGVFCTPDSINILDFRHPAGIGLKIPKFGVNAQSVFSRGDSIFLGCCNVRS*************SLRKQRLMNTYSLPESNAHSYHSAITQVWGNSNLVMGISGEGLFVFDALSNDGFQSFASDNSSIQKVREIIGPDDLFAPSFDYLASRVLLISRDRPALWRHLP
Disordered Region (DISPRO)
*****************GTK****NS*************************SQKPVIKSVPRVEKA************************SEFIRVYSDLKKDRVSRVSVER*********GAEL****KRGFSELKSDKERKLSGVGVL********************************RSSDVGLKVEKYDKVDVLNSENRLEKI*****************************************KFPSKLHEKLTFLEGKVKRIQSDIKRTKEMLDMNNPDATKLILSDIQEKISGIEKAMGN****************************************KGLKSEELEARLFPHHKLLR********************************SPIEENPIALQFLASLNKDENKVSAKSGLVDLECDEVFETDEA*************GKGEAELELTSDERLDEFDDQENRQAFVIDEGIEDTCTYQLNEIGQRTSTGGWFVSEGESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTKDVRAFHIEGEGKTTSRTVLGPLPNNN*****A*****VPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAETISLWDVNSLNPQTLLSVSSCGRKISALHVNNTDAELGGGVRQRVSSA****NDGVFCTPDSINILDFRHPAGIGLKIPKFGVNAQSVFSRGDSIFLGCCNVRSTGKKQPSSQVQQFSLRKQRLMNTYSLPESNAHSYHSAITQVWGNSNLVMGISGEGLFVFDALSNDGFQSFASDNSSIQKVREIIGPDDLFAPSFDYLASRVLLISRDRPALWRHLP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSLSIHRQRDRGGGSTGTKAVTPNSVSYKNPSPGLKKSSSGKENPKPITRSQKPVIKSVPRVEKAAVESGDSRIRRSTSSAPRGRSQSPSEFIRVYSDLKKDRVSRVSVERKGSRDSSVKGAELGFNEKRGFSELKSDKERKLSGVGVLGSNYNKGVNLGSNLGKSSGISVTSNFVSRNEKRSSDVGLKVEKYDKVDVLNSENRLEKIDRSVGLGLNESDEKISRDSKVSETLKEKSLSEEGLSTKVGVKFPSKLHEKxxxxxxxxxxxxxxxxxxxxxLDMNNPDATKLILSDIQEKISGIEKAMGNVAGDSGVKIVGSKGVGKNVEGSKIVEMSQDKIVDGVKGLVKGLKSEELEARLFPHHKLLRNRTSKPASESSQSDELNDEGARSDLKVEEKLLSPIEENPIALQFLASLNKDENKVSAKSGLVDLECDEVFETDEAAKSGEKGLSCMFSGKGEAELELTSDERLDEFDDQENRQAFVIDEGIEDTCTYQLNEIGQRTSTGGWFVSEGESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTKDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAETISLWDVNSLNPQTLLSVSSCGRKISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCTPDSINILDFRHPAGIGLKIPKFGVNAQSVFSRGDSIFLGCCNVRSTGKKQPSSQVQQFSLRKQRLMNTYSLPESNAHSYHSAITQVWGNSNLVMGISGEGLFVFDALSNDGFQSFASDNSSIQKVREIIGPDDLFAPSFDYLASRVLLISRDRPALWRHLP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	918
255575853	919	conserved hypothetical protein [Ricinus	0.967	0.966	0.607	0.0
224099949	925	predicted protein [Populus trichocarpa]	0.960	0.953	0.605	0.0
296083686	910	unnamed protein product [Vitis vinifera]	0.955	0.963	0.605	0.0
225433195	986	PREDICTED: uncharacterized protein LOC10	0.966	0.899	0.570	0.0
147770730	937	hypothetical protein VITISV_019350 [Viti	0.955	0.935	0.552	0.0
449433241	949	PREDICTED: uncharacterized protein LOC10	0.960	0.929	0.539	0.0
297800818	896	hypothetical protein ARALYDRAFT_493476 [	0.936	0.959	0.551	0.0
79474482	893	transducin/WD40 domain-containing protei	0.929	0.955	0.536	0.0
79587640	920	transducin/WD40 domain-containing protei	0.929	0.927	0.521	0.0
2244787	1249	hypothetical protein [Arabidopsis thalia	0.908	0.667	0.515	0.0

>gi|255575853|ref|XP_002528824.1| conserved hypothetical protein [Ricinus communis] gi|223531736|gb|EEF33558.1| conserved hypothetical protein [Ricinus communis]

 Score = 1091 bits (2822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 575/947 (60%), Positives = 693/947 (73%), Gaps = 59/947 (6%)

Query: 1   MSSLSIHRQRDRGGGSTGTK---------AVTPNSVSYKNPSPGLKKSSSGKENPKPITR 51
           MS+ S  R +DR G +TG K         ++TP S S  NP   LKKS+S KENP+  +R
Sbjct: 1   MSAPSTRRLKDRNG-TTGAKISAVQKPAKSLTPISNSSPNPDSALKKSASAKENPRLNSR 59

Query: 52  SQKPVIKSVPRVEKAAV-------ESGDSRIRRSTSSAPRGRSQSPSEFIRVYSDLKKDR 104
            QKP IK VPRV+KAA        + G+ R+R STSS PRGRS SPSEFIRV+ D    R
Sbjct: 60  IQKPTIKPVPRVDKAAAAAVVPGSDGGEGRMRWSTSSVPRGRSSSPSEFIRVFRD---SR 116

Query: 105 VSRVSVERK-----GSRDSSVK------GAELGFNEKRGFSELKSDK-ERKLSGVGVLGS 152
           VS+   + +     G ++ +VK      G  +   +K GF +L   K E   +G      
Sbjct: 117 VSKGESDNRVVLSVGKKNRNVKDCKESSGLSVATVKKSGFCDLNDVKVEENENGFKASSG 176

Query: 153 NYNKGVNLGSNLGKSSGISVTSNFVSRNEKRSSDVGLKVEKYDKVDVLNSENRLEKIDRS 212
           N NK       + KS  +S  S+         S++  KV K  K+D L ++N    I   
Sbjct: 177 NLNK-------VAKSREVSDVSD---------SNLDSKVLKGVKLDKLCADNSGSDIKVD 220

Query: 213 VGLGLNESDEKISRDSKVSETLKEKSLSEEGLSTKVGVKFPSKLHEKLTFLEGKVKRIQS 272
                +++  KI    KVSE +KEK L EEG   K+GVK+PSKLHEKL FLEGKVKRI S
Sbjct: 221 SFKEPSDNTSKI----KVSENIKEKGLIEEGTGNKIGVKYPSKLHEKLAFLEGKVKRIAS 276

Query: 273 DIKRTKEMLDMNNPDATKLILSDIQEKISGIEKAMGNVAGDSGVKIVGSKGVGKNVEGSK 332
           DIKRTKEMLDMNNPDA+K++LSDIQ+KISGIEKA+GNV G    +  G++G   NV G  
Sbjct: 277 DIKRTKEMLDMNNPDASKVVLSDIQDKISGIEKAIGNVGGGDSSRTGGNEGGENNVVGK- 335

Query: 333 IVEMSQDKIVDGVKGLVKGLKSEELEARLFPHHKLLRNRT--SKPASESSQSDELNDEGA 390
               ++D+ VD VKG +KGL +EELEARL PHHKLLRNRT   +P+  S   ++     +
Sbjct: 336 ----NKDEKVDQVKGSIKGLNNEELEARLLPHHKLLRNRTLLKEPSGSSQGCEDSIVPES 391

Query: 391 RSDLKVEEKLLSPIEENPIALQFLASLNKDENKVSAKSGLVDLECDEVFETDEAAKSGEK 450
            S+ KV+EKLLSPIEENPIAL+FLASLNK++ KV+ +   VD E  EV ETD+AA SG +
Sbjct: 392 TSESKVKEKLLSPIEENPIALEFLASLNKEDTKVTLRETTVDFENREVKETDDAAPSGRQ 451

Query: 451 GLSCMFSGKGEAELELTSDERLDEFDDQENRQAFVIDEGIEDTCTYQLNEIGQRTSTGGW 510
             S M  GK E E+ LT+DE  DEFDDQENR   VI E  EDTC YQ+NEIG ++STGGW
Sbjct: 452 DSSSMSYGKREEEVVLTTDETFDEFDDQENRPVLVIGEETEDTCVYQVNEIGTKSSTGGW 511

Query: 511 FVSEGESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRY 570
           FVSEGESVLLAHDDGSC++YDI NCE+KAVYKPP  VS +IWRDCWIIRA  ADGCSGRY
Sbjct: 512 FVSEGESVLLAHDDGSCTFYDIANCEEKAVYKPPVGVSPNIWRDCWIIRAPSADGCSGRY 571

Query: 571 VVAASAGNSLDSGFCSWDFYTKDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLV 630
           V+AASAG +LDSGFCSWDFYTKDVRAFH+E    TTSRTVLG LPN+   RRN+ SS L+
Sbjct: 572 VLAASAGGTLDSGFCSWDFYTKDVRAFHMEDGETTTSRTVLGTLPNSATSRRNSLSSSLL 631

Query: 631 PETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRG 690
           PE  QWWY+PCGPLI S A++QR V ++D+RDGEQIM+WEVQ+PVL MD SSP+QWRNRG
Sbjct: 632 PEARQWWYRPCGPLIISTATTQRGVKIFDVRDGEQIMKWEVQRPVLAMDNSSPVQWRNRG 691

Query: 691 KLVVAEAETISLWDVNSLNPQTLLSVSSCGRKISALHVNNTDAELGGGVRQRVSSAEAEG 750
           K+V+AEA+TIS+WDVNSLN Q+LLS+S CGRK+SALHV NTDAELGGGVRQRVSSAEAEG
Sbjct: 692 KVVIAEADTISVWDVNSLNQQSLLSISLCGRKVSALHVVNTDAELGGGVRQRVSSAEAEG 751

Query: 751 NDGVFCTPDSINILDFRHPAGIGLKIPKFGVNAQSVFSRGDSIFLGCCNVRSTGKKQPSS 810
           NDGVFC+PDSINILDFRHP+GIGLKIPK G   QSVF+RGDS+++GC N RS GKKQP +
Sbjct: 752 NDGVFCSPDSINILDFRHPSGIGLKIPKLGAGVQSVFTRGDSVYIGCTNTRSAGKKQPCA 811

Query: 811 QVQQFSLRKQRLMNTYSLPESNAHSYHSAITQVWGNSNLVMGISGEGLFVFDALSNDGFQ 870
           QVQQFSLRKQ L++TYS+PESNAH +++AITQVWGNS+ VMG+ G GLFVFDAL +DG Q
Sbjct: 812 QVQQFSLRKQSLVSTYSMPESNAHPHYTAITQVWGNSDFVMGVCGLGLFVFDALEDDGVQ 871

Query: 871 SFASDNSSIQKVREIIGPDDLFAPSFDYLASRVLLISRDRPALWRHL 917
           S  +D S  Q V+++IGPDDL++PSFDYL+SRVLLISRDRPALWRHL
Sbjct: 872 SVTADQSCTQNVKDVIGPDDLYSPSFDYLSSRVLLISRDRPALWRHL 918

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099949|ref|XP_002311684.1| predicted protein [Populus trichocarpa] gi|222851504|gb|EEE89051.1| predicted protein [Populus trichocarpa]

 Score = 1060 bits (2741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 581/959 (60%), Positives = 677/959 (70%), Gaps = 77/959 (8%)

Query: 1   MSSLSIHRQRDRGGGSTGT------KAVTPNSVSYKNP-SPGLKKSSSGKENP-KPITRS 52
           MS+ S  R RDR G +  T      K VT NS  Y N  +  +K S  GKENP +P +R 
Sbjct: 1   MSASSARRLRDRNGVAAATAAQKPTKTVTLNSTFYNNNRNSAIKGSLPGKENPTRPNSRV 60

Query: 53  QKPVIKSVPRVEKAAVESG-DSRIRRSTSSAPRGRSQSPSEFIRVYSDLKKDRVSRVSVE 111
           QKP I  VPRV+KAAV  G + R+R STSSAPRGRS SPSEFIRV+ D    RV +   +
Sbjct: 61  QKPSILPVPRVDKAAVGDGSEGRMRWSTSSAPRGRSPSPSEFIRVFRD---SRVCKGESD 117

Query: 112 RKGSRDSSVKGAELGFNEKRGFS-ELKS-------------DKERKLSGVGVLGSNYNKG 157
           ++    +  K    G  E  GFS ELK              + +++L G+ VL  N NK 
Sbjct: 118 QRVVSSAGKKNGIRGLKENGGFSVELKKRNGLCEGNDLKILESKKQLCGLKVLNDNCNKQ 177

Query: 158 VNLGSNLGKSSGISVTSNFVSRNEKRSSDVGLKVEKYDKVDVLNSENRLEKIDRSVGLGL 217
           VNL     KSS   + SN  S+           V K+DK+    SE    K D       
Sbjct: 178 VNLR----KSS--ELDSNLDSK--------AANVCKFDKLYEEKSEPEF-KSD-----SF 217

Query: 218 NESDEKISRDSKVSETLKEKSLSEEGLSTKVGVKFPSKLHEKLTFLEGKVKRIQSDIKRT 277
            ES EK S   KV E LK+K LS+EG  +KVGVK+PSKLH+KL FLEGKVKRI SDIK+T
Sbjct: 218 RESSEKSSAKGKVLENLKDKGLSDEGSGSKVGVKYPSKLHDKLAFLEGKVKRIASDIKKT 277

Query: 278 KEMLDMNNPDATKLILSDIQEKISGIEKAMGNVAGDSGVKIVGSKGVGKNVEGSK-IVEM 336
           KE+LDMNNPDA+K+ILSDIQ+KISGIEKAMGNVA      + G+   G N  G+  +VE 
Sbjct: 278 KELLDMNNPDASKVILSDIQDKISGIEKAMGNVA------VTGTSRSGGNDTGTAMVVEK 331

Query: 337 SQDKIVDGVKGLVKGLKSEELEARLFPHHKLLRNRTS-KPASESSQSDELNDEGARSDLK 395
           S+ + V+ VK  VKGL +EELE RLFPHHKLLRNRTS K    S QS E     +  +LK
Sbjct: 332 SESEKVEDVKSSVKGLNTEELEERLFPHHKLLRNRTSLKAPIASCQSHE-----SGCELK 386

Query: 396 VEEKLLSPIEENPIALQFLASLNKDENKVSAKSGLVDLECDEVFETDEAAKSGEKGLSCM 455
           V EK   PIEENP A + L SL K++ KV+ +   V LE  EV E  + + SG++  S M
Sbjct: 387 VGEKFSGPIEENPKAFELLYSLGKEDKKVTMRDAKVGLESFEVQEMGDGSVSGKQDSSNM 446

Query: 456 FSGKGEAELELTSDERLDEFDDQENRQAFVIDEGIEDTCTYQLNEIGQRTSTGGWFVSEG 515
           F+ K E +L LT+DE LDEFDDQEN    +I E  EDTC Y++ EIG + STGGWFVSEG
Sbjct: 447 FNLKCE-DLVLTTDETLDEFDDQENGNTIMIGEETEDTCVYEVKEIGTKNSTGGWFVSEG 505

Query: 516 ESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAAS 575
           ES+LL HDDGSCS+YDI NCE+KAVYKPP  VS +IWRDCW+IRA GADGCSGRYVVAAS
Sbjct: 506 ESILLTHDDGSCSFYDIANCEEKAVYKPPGGVSPNIWRDCWMIRAPGADGCSGRYVVAAS 565

Query: 576 AGNSLDSGFCSWDFYTKDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQ 635
           AGN+LDSGFCSWDFY KDVRAFHIE  G T SRTVLGPLPNN   RRNA SS+L+PET Q
Sbjct: 566 AGNTLDSGFCSWDFYAKDVRAFHIEDGGTTASRTVLGPLPNNTASRRNALSSILLPETRQ 625

Query: 636 WWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVA 695
           WWYKPCGPL+ SAASSQ+VV V+DIRDGEQIM+WEVQKPVL MDYSSPLQWRNRGK+VVA
Sbjct: 626 WWYKPCGPLMISAASSQKVVKVHDIRDGEQIMKWEVQKPVLAMDYSSPLQWRNRGKVVVA 685

Query: 696 EAETISLWDVNSLNPQTLLSVSSCGRKISALHVNNTDAELGGGVRQ-------------- 741
           EAETIS+WDVNS+NPQ+LLSVS  GRKISALHV NTDAELGGGVRQ              
Sbjct: 686 EAETISVWDVNSVNPQSLLSVSLAGRKISALHVINTDAELGGGVRQRGYGTFLLPVLMLV 745

Query: 742 ---RVSSAEAEGNDGVFCTPDSINILDFRHPAGIGLKIPKFGVNAQSVFSRGDSIFLGCC 798
              R +SAEAEGNDGVFCT DSIN+LDFR+P+GIGLKIPK G + QSVFSRGDSI++GC 
Sbjct: 746 FERRATSAEAEGNDGVFCTHDSINVLDFRNPSGIGLKIPKIGASVQSVFSRGDSIYIGCA 805

Query: 799 NVRSTGKKQPSSQVQQFSLRKQRLMNTYSLPESNAHSYHSAITQVWGNSNLVMGISGEGL 858
           N R  GKK P SQVQ FS+RKQRL+NTYSLPESNA  ++SAITQVWGNSN+VMG+ G GL
Sbjct: 806 NTRFAGKKHPCSQVQHFSMRKQRLVNTYSLPESNAQPHYSAITQVWGNSNVVMGVCGLGL 865

Query: 859 FVFDALSNDGFQSFASDNSSIQKVREIIGPDDLFAPSFDYLASRVLLISRDRPALWRHL 917
           F FDAL +D  QS   D  S QKV+++IGPDDL +PSFDYLAS  LL+SRDRPALW+ L
Sbjct: 866 FAFDALKDDAPQSLTGDIGSTQKVKDVIGPDDLDSPSFDYLASCALLVSRDRPALWKRL 924

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083686|emb|CBI23675.3| unnamed protein product [Vitis vinifera]

 Score = 1058 bits (2737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 567/937 (60%), Positives = 673/937 (71%), Gaps = 60/937 (6%)

Query: 1   MSSLSIHRQRDRGGGSTGTKAVTPNS----VSYKNPSPGLKKSSSGKENPKPITR----S 52
           MS+ S+ R +DRGG      A+ P+     VS K P    +KSS+GKENP+P +R     
Sbjct: 1   MSASSVRRIKDRGGAGGKVTAMRPSKTLTPVSDKAPIETFRKSSAGKENPRPTSRLPAVM 60

Query: 53  QKPVIKSVPRVEKAAV---ESGDSRIRRSTSSAPRGRSQSPSEFIRVYSDLKKDRVSRVS 109
           QKP I+++PR++K +      G+SR+R STSS PRGRS SPS+F R+ SDL+KD+ SRVS
Sbjct: 61  QKPAIRAMPRIDKLSAGNGSDGESRVRWSTSSVPRGRSSSPSDFTRLLSDLRKDKGSRVS 120

Query: 110 VERK-----GSRDSSV-KGAELGFNEKRGFSELKSDKERKLSGVGVLGSNYNKGVNLGSN 163
           ++R+     G RD SV +G     +  R   E  S  E   S V     + ++G  LG N
Sbjct: 121 LDRREKVSGGERDRSVSRGRVSRVSVDR--CENSSGGESDRSAVKPSVCSNSEGPKLGQN 178

Query: 164 LGKSSGISVTSNFVSRNEKRSSDVGLKVEKYDKVDVLNSENRLEKIDRSVGLGLNESDEK 223
                     SN   R   R +D G    + +   V  S++ + K+ + V      S +K
Sbjct: 179 --------ADSNVKFRGGSRVTDGG----REENFFVSKSDDVVGKVGKGVDSSCRGSGQK 226

Query: 224 ISRDSKVSETLKEKSLSEEGLSTKVGVKFPSKLHEKLTFLEGKVKRIQSDIKRTKEMLDM 283
                K+SE  KEK  SE G+  + G K+PSKLHEKL FLEGKVKRI SDIKRTKEML+M
Sbjct: 227 SLNAMKISEMSKEKGASE-GVGGRSGNKYPSKLHEKLAFLEGKVKRIASDIKRTKEMLEM 285

Query: 284 NNPDATKLILSDIQEKISGIEKAMGNVAGDSGVKIVGSKGVGKNVEGSKIVEMSQDKIVD 343
           NNPD +K+ILSDIQ+KI GIEKAMG+VA DS                            D
Sbjct: 286 NNPDTSKVILSDIQDKICGIEKAMGHVASDSDANAA-----------------------D 322

Query: 344 GVKGLVKGLKSEELEARLFPHHKLLRNRTSKPAS-ESSQSDELNDEGARSDLKVEEKLLS 402
            V   VKGL  EELEARLFPHH+L+RNRTS  AS  SSQ+ +  +  +   LK EEK LS
Sbjct: 323 HVTSSVKGLNCEELEARLFPHHRLIRNRTSMKASLGSSQNFQSCNVESTGQLKPEEKALS 382

Query: 403 PIEENPIALQFLASLNKDENKVSAKSGLVDLECDEVFETDEAAKSGEKGLSCMFSGKGEA 462
           PI+ENPIA++FLASL++D +KV+ +   V  E  EV E D A  S  +       GK   
Sbjct: 383 PIDENPIAVEFLASLSEDNSKVTMRDRHVGSEFCEVKEMDGATTSASQDCENRIMGKPNV 442

Query: 463 ELELTSDERLD-EFDDQENRQAFVIDEGIED-TCTYQLNEIGQRTSTGGWFVSEGESVLL 520
           EL LT+DE LD EF DQENRQA VI E  E+ TC Y LNEIG++T+TGGWFVSEGES+LL
Sbjct: 443 ELILTTDETLDDEFADQENRQAMVISEETEEETCVYLLNEIGRKTTTGGWFVSEGESILL 502

Query: 521 AHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSL 580
           AHDDGSCS++DI N E+KA YKPP+ +S ++WRDCWIIRA GADGCSGRYVVAASAGN++
Sbjct: 503 AHDDGSCSFHDIANSEEKAEYKPPSGLSPNVWRDCWIIRAPGADGCSGRYVVAASAGNTM 562

Query: 581 DSGFCSWDFYTKDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKP 640
           DSGFCSWDFY+K VRAFHIE EG TT+RTVLGPL NN++YRRNA S++L PE  QWWYKP
Sbjct: 563 DSGFCSWDFYSKAVRAFHIE-EG-TTTRTVLGPLSNNSVYRRNALSTILAPENRQWWYKP 620

Query: 641 CGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAETI 700
           CGPL+ S ASSQRVV VYDIRDGEQIM WEVQKPVLTMDYSSPLQWRNRGK+VVAEAETI
Sbjct: 621 CGPLLVSTASSQRVVKVYDIRDGEQIMMWEVQKPVLTMDYSSPLQWRNRGKVVVAEAETI 680

Query: 701 SLWDVNSLNPQTLLSVSSCGRKISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCTPDS 760
           SLWDV+SL PQ LLSVSS G+KI+ALHVNNTDAELGGGVRQRVSS+EAEGNDGVFCTPD 
Sbjct: 681 SLWDVSSLTPQALLSVSSSGQKITALHVNNTDAELGGGVRQRVSSSEAEGNDGVFCTPDF 740

Query: 761 INILDFRHPAGIGLKIPKFGVNAQSVFSRGDSIFLGCCNVRSTGKKQPSSQVQQFSLRKQ 820
           IN LDFRHP GIG +IP  G+N QSVFSRGDSIFLGC +VRS GKKQP +QVQQFS+RKQ
Sbjct: 741 INTLDFRHPTGIGHRIPNPGLNVQSVFSRGDSIFLGCTSVRSAGKKQPCAQVQQFSIRKQ 800

Query: 821 RLMNTYSLPESNAHSYHSAITQVWGNSNLVMGISGEGLFVFDALSNDGFQSFASDNSSIQ 880
           RL++TY+LPES+AH  H+AITQVWGNSNLVMG+ G GLFVFDAL +DG QS+  D  + Q
Sbjct: 801 RLVSTYALPESSAHIQHTAITQVWGNSNLVMGVCGLGLFVFDALRDDGLQSYNIDYDNTQ 860

Query: 881 KVREIIGPDDLFAPSFDYLASRVLLISRDRPALWRHL 917
           K REIIGPDDL++PSFDY +SR LLISRDRPALWRHL
Sbjct: 861 KAREIIGPDDLYSPSFDYSSSRALLISRDRPALWRHL 897

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433195|ref|XP_002281751.1| PREDICTED: uncharacterized protein LOC100258054 [Vitis vinifera]

 Score = 1049 bits (2712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 579/1015 (57%), Positives = 682/1015 (67%), Gaps = 128/1015 (12%)

Query: 1   MSSLSIHRQRDRGGGSTGTKAVTPNS----VSYKNPSPGLKKSSSGKENPKPITR----S 52
           MS+ S+ R +DRGG      A+ P+     VS K P    +KSS+GKENP+P +R     
Sbjct: 1   MSASSVRRIKDRGGAGGKVTAMRPSKTLTPVSDKAPIETFRKSSAGKENPRPTSRLPAVM 60

Query: 53  QKPVIKSVPRVEKAAV---ESGDSRIRRSTSSAPRGRSQSPSEFIRVYSDLKKD------ 103
           QKP I+++PR++K +      G+SR+R STSS PRGRS SPS+F R+ SDL+KD      
Sbjct: 61  QKPAIRAMPRIDKLSAGNGSDGESRVRWSTSSVPRGRSSSPSDFTRLLSDLRKDKGSRVS 120

Query: 104 -------------------RVSRVSVER---------------------------KGSRD 117
                              RVSRVSV+R                           KG RD
Sbjct: 121 LDRREKVSGGERDRSVSRGRVSRVSVDRCENSSGGESDRSAGKVGKGVNGSRVLKKGFRD 180

Query: 118 SSVKGAELGFNEKRGFS----------------------ELKSDKERKLSGVGVLGSNYN 155
           SS K  E   N  R                         ELK D+ +K S   V   N+ 
Sbjct: 181 SSPKVNERSVNGLRIVPGCNDSENLDVNLKKNGDIAEKFELKLDERKKNSNGVVAIDNFM 240

Query: 156 KGVNLGSNLGKSS----------GISVTSNFVSRNEKRSSDVGLKVEKYDKVDVLNSENR 205
           + VNL  N  K S          G +  SN   R   R +D G    + +   V  S++ 
Sbjct: 241 EEVNLRLNSVKPSVCSNSEGPKLGQNADSNVKFRGGSRVTDGG----REENFFVSKSDDV 296

Query: 206 LEKIDRSVGLGLNESDEKISRDSKVSETLKEKSLSEEGLSTKVGVKFPSKLHEKLTFLEG 265
           + K+ + V      S +K     K+SE  KEK  SE G+  + G K+PSKLHEKL FLEG
Sbjct: 297 VGKVGKGVDSSCRGSGQKSLNAMKISEMSKEKGASE-GVGGRSGNKYPSKLHEKLAFLEG 355

Query: 266 KVKRIQSDIKRTKEMLDMNNPDATKLILSDIQEKISGIEKAMGNVAGDSGVKIVGSKGVG 325
           KVKRI SDIKRTKEML+MNNPD +K+ILSDIQ+KI GIEKAMG+VA DS           
Sbjct: 356 KVKRIASDIKRTKEMLEMNNPDTSKVILSDIQDKICGIEKAMGHVASDSDANAA------ 409

Query: 326 KNVEGSKIVEMSQDKIVDGVKGLVKGLKSEELEARLFPHHKLLRNRTSKPAS-ESSQSDE 384
                            D V   VKGL  EELEARLFPHH+L+RNRTS  AS  SSQ+ +
Sbjct: 410 -----------------DHVTSSVKGLNCEELEARLFPHHRLIRNRTSMKASLGSSQNFQ 452

Query: 385 LNDEGARSDLKVEEKLLSPIEENPIALQFLASLNKDENKVSAKSGLVDLECDEVFETDEA 444
             +  +   LK EEK LSPI+ENPIA++FLASL++D +KV+ +   V  E  EV E D A
Sbjct: 453 SCNVESTGQLKPEEKALSPIDENPIAVEFLASLSEDNSKVTMRDRHVGSEFCEVKEMDGA 512

Query: 445 AKSGEKGLSCMFSGKGEAELELTSDERLD-EFDDQENRQAFVIDEGIED-TCTYQLNEIG 502
             S  +       GK   EL LT+DE LD EF DQENRQA VI E  E+ TC Y LNEIG
Sbjct: 513 TTSASQDCENRIMGKPNVELILTTDETLDDEFADQENRQAMVISEETEEETCVYLLNEIG 572

Query: 503 QRTSTGGWFVSEGESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAG 562
           ++T+TGGWFVSEGES+LLAHDDGSCS++DI N E+KA YKPP+ +S ++WRDCWIIRA G
Sbjct: 573 RKTTTGGWFVSEGESILLAHDDGSCSFHDIANSEEKAEYKPPSGLSPNVWRDCWIIRAPG 632

Query: 563 ADGCSGRYVVAASAGNSLDSGFCSWDFYTKDVRAFHIEGEGKTTSRTVLGPLPNNNIYRR 622
           ADGCSGRYVVAASAGN++DSGFCSWDFY+K VRAFHIE EG TT+RTVLGPL NN++YRR
Sbjct: 633 ADGCSGRYVVAASAGNTMDSGFCSWDFYSKAVRAFHIE-EG-TTTRTVLGPLSNNSVYRR 690

Query: 623 NAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSS 682
           NA S++L PE  QWWYKPCGPL+ S ASSQRVV VYDIRDGEQIM WEVQKPVLTMDYSS
Sbjct: 691 NALSTILAPENRQWWYKPCGPLLVSTASSQRVVKVYDIRDGEQIMMWEVQKPVLTMDYSS 750

Query: 683 PLQWRNRGKLVVAEAETISLWDVNSLNPQTLLSVSSCGRKISALHVNNTDAELGGGVRQR 742
           PLQWRNRGK+VVAEAETISLWDV+SL PQ LLSVSS G+KI+ALHVNNTDAELGGGVRQR
Sbjct: 751 PLQWRNRGKVVVAEAETISLWDVSSLTPQALLSVSSSGQKITALHVNNTDAELGGGVRQR 810

Query: 743 VSSAEAEGNDGVFCTPDSINILDFRHPAGIGLKIPKFGVNAQSVFSRGDSIFLGCCNVRS 802
           VSS+EAEGNDGVFCTPD IN LDFRHP GIG +IP  G+N QSVFSRGDSIFLGC +VRS
Sbjct: 811 VSSSEAEGNDGVFCTPDFINTLDFRHPTGIGHRIPNPGLNVQSVFSRGDSIFLGCTSVRS 870

Query: 803 TGKKQPSSQVQQFSLRKQRLMNTYSLPESNAHSYHSAITQVWGNSNLVMGISGEGLFVFD 862
            GKKQP +QVQQFS+RKQRL++TY+LPES+AH  H+AITQVWGNSNLVMG+ G GLFVFD
Sbjct: 871 AGKKQPCAQVQQFSIRKQRLVSTYALPESSAHIQHTAITQVWGNSNLVMGVCGLGLFVFD 930

Query: 863 ALSNDGFQSFASDNSSIQKVREIIGPDDLFAPSFDYLASRVLLISRDRPALWRHL 917
           AL +DG QS+  D  + QK REIIGPDDL++PSFDY +SR LLISRDRPALWRHL
Sbjct: 931 ALRDDGLQSYNIDYDNTQKAREIIGPDDLYSPSFDYSSSRALLISRDRPALWRHL 985

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770730|emb|CAN71290.1| hypothetical protein VITISV_019350 [Vitis vinifera]

 Score =  961 bits (2483), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/976 (55%), Positives = 659/976 (67%), Gaps = 99/976 (10%)

Query: 1   MSSLSIHRQRDRGGGSTGTKAVTPNS----VSYKNPSPGLKKSSSGKENPKPITR----S 52
           MS+ S+ R +DRGG      A+ P+     VS K P    +KSS+GKENP+P +R    +
Sbjct: 1   MSASSVRRIKDRGGAGGKVTAMRPSKTLTPVSDKAPIETFRKSSAGKENPRPTSRLPAVT 60

Query: 53  QKPVIKSVPRVEKAAV---ESGDSRIRRSTSSAPRGRSQSPSEFIRVYSDLKKDRVSRVS 109
           QKP I+++PR++K +      G+SR+R STSS PRGRS SPS+F R+ SDL+KD+ SRVS
Sbjct: 61  QKPAIRAMPRIDKLSAGNGSDGESRVRWSTSSVPRGRSSSPSDFTRLLSDLRKDKGSRVS 120

Query: 110 VERK-----GSRDSSV-----------------------------KGAELGFNEKRGFSE 135
           ++R+     G RD SV                             KG       K+GF +
Sbjct: 121 LDRREKVSGGERDRSVSRGRVSRVSVDRCENSSGGESDRSAGKVGKGVNGSRVLKKGFRD 180

Query: 136 LKSD-KERKLSGVGVLGSNYNKGVNLGSNLGKSSGISVTSNFVSRNEKRSSDVGLKVEKY 194
                 ER ++G+ ++    N   NL  NL K+  I+  S       K++S+  + ++ +
Sbjct: 181 SSPKVNERSVNGLRIV-PGCNDSENLDVNLKKNGDIAEKSELKLDERKKNSNGVVAIDDF 239

Query: 195 -DKVDVLNSENRLEKIDRSV-------GLGLN-ESDEKISRDSKVSETLKEKSLSEEGLS 245
            ++V++     RL  +  SV        LG N +S+ K+   S+V++  +E++       
Sbjct: 240 MEEVNL-----RLNSVKPSVCSNSEGPKLGQNSDSNVKLRGGSRVTDGGREENFFVSKSD 294

Query: 246 TKVGVKFPSKLHEKLTFLEGKVKRIQSDIKRTKEMLDMNNPDATKLILSDIQEKISGIEK 305
             VG K    +       EGKVKRI SDIKRTKEML+MNNPD +K+ILSDIQ+KI GIEK
Sbjct: 295 DVVG-KIGKGVDLSCRGSEGKVKRIASDIKRTKEMLEMNNPDTSKVILSDIQDKICGIEK 353

Query: 306 AMGNVAGDSGVKIVGSKGVGKNVEGSKIVEMSQDKIVDGVKGLVKGLKSEELEARLFPHH 365
           AMG+VA DS      SK  G + E  K  E SQ+K  D     VKGL  EELEARLFPHH
Sbjct: 354 AMGHVASDSDANAGCSKSTGNDKEQIKTAEKSQNKQADHGTSSVKGLNCEELEARLFPHH 413

Query: 366 KLLRNRTSKPAS-ESSQSDELNDEGARSDLKVEEKLLSPIEENPIALQFLASLNKDENKV 424
           +L+RNRTS  AS  SSQ+ +  +  + S LK EEK LSPI+ENPIA++FLASL++D +KV
Sbjct: 414 RLIRNRTSMKASLGSSQNFQSCNVESTSQLKPEEKALSPIDENPIAVEFLASLSEDNSKV 473

Query: 425 SAKSGLVDLECDEVFETDEAAKSGEKGLSCMFSGKGEAELELTSDERLD-EFDDQENRQA 483
           + +   V  E  EV E D A  S  +       GK   EL LT+DE LD EF DQENRQA
Sbjct: 474 TMRDRHVGSEFCEVKEMDGATTSASQDCESRIMGKPNVELILTTDETLDDEFADQENRQA 533

Query: 484 FVIDEGIED-TCTYQLNEIGQRTSTGGWFVSEGESVLLAHDDGSCSYYDITNCEDKAVYK 542
            VI E  E+ TC Y LNEIG++T+TGGWFVSEGES+LLAHDDGSCS++DI N E+KA YK
Sbjct: 534 MVISEETEEETCVYLLNEIGRKTTTGGWFVSEGESILLAHDDGSCSFHDIANSEEKAEYK 593

Query: 543 PPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTKDVRAFHIEGE 602
           PP+ +S ++WRDCWIIRA GADGCSGRYVVAASAGN++DSGFCSWDFY+K VRAFHIE E
Sbjct: 594 PPSGLSPNVWRDCWIIRAPGADGCSGRYVVAASAGNTMDSGFCSWDFYSKAVRAFHIE-E 652

Query: 603 GKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRD 662
           G TT+RTVLGPL NN++YRRNA S++L PE  QWWYKPCGPL+ S ASSQRVV VYDIRD
Sbjct: 653 G-TTTRTVLGPLSNNSVYRRNALSTILAPENRQWWYKPCGPLLVSTASSQRVVKVYDIRD 711

Query: 663 GEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAETISLWDVNSLNPQTLLSVSSCGRK 722
           GEQIM WEVQKPVLTMDYSSPLQWRNRGK+VVAEAETISLWDV+SL PQ LLSVSS G+K
Sbjct: 712 GEQIMMWEVQKPVLTMDYSSPLQWRNRGKVVVAEAETISLWDVSSLTPQALLSVSSSGQK 771

Query: 723 ISALHVNNTDAELGGGVRQRVSS-AEAEGNDGVFCTPDSINILDFRHPAGIGLKIPKFGV 781
           I+ALHVNNTDAELGGGVRQRVSS A  +G                               
Sbjct: 772 ITALHVNNTDAELGGGVRQRVSSSASLQGK------------------------------ 801

Query: 782 NAQSVFSRGDSIFLGCCNVRSTGKKQPSSQVQQFSLRKQRLMNTYSLPESNAHSYHSAIT 841
              SVFSRGDSIFLGC +VRS GKKQP +QVQQFS+RKQRL++TY+LPES+AH  H+AIT
Sbjct: 802 -CMSVFSRGDSIFLGCTSVRSAGKKQPCAQVQQFSIRKQRLVSTYALPESSAHIQHTAIT 860

Query: 842 QVWGNSNLVMGISGEGLFVFDALSNDGFQSFASDNSSIQKVREIIGPDDLFAPSFDYLAS 901
           QVWGNSNLVMG+ G GLFVFDAL +DG QS+  D  + QK REIIGPDDL++PSFDY +S
Sbjct: 861 QVWGNSNLVMGVCGLGLFVFDALRDDGLQSYNIDYDNTQKAREIIGPDDLYSPSFDYSSS 920

Query: 902 RVLLISRDRPALWRHL 917
           R LLISRDRPALWRHL
Sbjct: 921 RALLISRDRPALWRHL 936

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433241|ref|XP_004134406.1| PREDICTED: uncharacterized protein LOC101211564 [Cucumis sativus] gi|449486780|ref|XP_004157400.1| PREDICTED: uncharacterized LOC101211564 [Cucumis sativus]

 Score =  937 bits (2423), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 530/983 (53%), Positives = 656/983 (66%), Gaps = 101/983 (10%)

Query: 1   MSSLSIHRQRDRGGGSTGT----KAVTPNSVSYK--NPSPGLKKSSSGKENPKPITR--- 51
           MS+ S  R RDR GGS  T    K +TP S S +  N     + +S+GKENPK  ++   
Sbjct: 1   MSAPSTRRLRDRSGGSAPTINPSKPLTPVSTSNRKNNSDSSSRFASAGKENPKSTSKLPI 60

Query: 52  -SQKPVIKSVPRVEKAA---VESGDSRIRRSTSSAPRGRSQSPSEFIRVYSDLKKDRVSR 107
            +QKP I++VPRV KAA   V   ++R R S+SS PRGRS SPSEFIR   D +++R  R
Sbjct: 61  MTQKPSIRAVPRVNKAAAIAVSDSETRSRWSSSSVPRGRSSSPSEFIRSSVDSRRER--R 118

Query: 108 VSVER-KGS------------RDSSVKGAELGFNEKRGFSELKSDKERKLSGVGVLG--- 151
           VSV+R +GS            R S V+G+E    +K G  +L    +  + G G+ G   
Sbjct: 119 VSVDRGRGSVGENDLTALSSGRASRVRGSE-SDKQKVGVKDL----DVMVGGGGLAGLRV 173

Query: 152 -SNYNKGVNLGSNLGKSSGISV----------------TSNFVSRNEKRSSDV------- 187
                + V L +N+     IS                 T +  S   +R  +V       
Sbjct: 174 YRELKENVKLRTNMDSKIRISEVKPLADEEKIEDKSLETKDLESHTRERIDEVLRSHENS 233

Query: 188 --GLKVEKYDKVDVLNSENR--------LEKIDRSVGLGLNESDEKISRDSKVSETLKEK 237
                 EK   V V+N E++            DR       ES++K  +  K  E + E 
Sbjct: 234 KNSTVPEKVQSVIVVNEEHKEKPCIVPEFSSADRQRVNSSLESNQKSGQ--KDLEIVNES 291

Query: 238 -SLSEEGLSTKVGVKFPSKLHEKLTFLEGKVKRIQSDIKRTKEMLDMNNPDATKLILSDI 296
             +  EG S+  G K+ SKLHEKL FLEGKVKRI SDIK+TKEMLD+NN  ++KLILSDI
Sbjct: 292 GQIGGEGNSSCAGNKYTSKLHEKLAFLEGKVKRIASDIKKTKEMLDLNNTSSSKLILSDI 351

Query: 297 QEKISGIEKAMGNVAGDSGVKIVGSKGVGKNVEGSKIVEMSQDKIVDGVKGLVKGLKSEE 356
           QEKISGIEKA+G+ A  SG +   S                      G+   VKGL ++E
Sbjct: 352 QEKISGIEKAIGHGAVSSGDETNES----------------------GINTSVKGLNTKE 389

Query: 357 LEARLFPHHKLLRNRTS-KPASESSQSDELNDEGARSDLKVEEKLLSPIEENPIALQFLA 415
           LE RLFPHHKLLRNR S K  S+SSQS+E++  G    +KVE+    PI+ENPIAL+FLA
Sbjct: 390 LEERLFPHHKLLRNRMSLKSTSDSSQSNEIHLTGPSHVVKVEDM---PIDENPIALEFLA 446

Query: 416 SLNKDENKVSAKSGLVDLECDEVFETDEAAKSGEKGLSCMFSGKGEAELELTSDERLDEF 475
           SLN++  KV+ ++  V LE  EV E DE    G +  S  F GK EAE+ LTSDE LD+F
Sbjct: 447 SLNREHAKVTMRTEQVGLEFCEVQEMDENTSGGLQESSTQFKGKQEAEVILTSDEILDDF 506

Query: 476 DDQENRQAFVIDEGIEDTCTYQLNEIGQRTSTGGWFVSEGESVLLAHDDGSCSYYDITNC 535
           DDQEN+Q  +I +  +D    Q+NEIG +TSTGGWFVSEGE+VLLAH+DGSCS+YDITN 
Sbjct: 507 DDQENKQGGLIGDETDDAGINQMNEIGIKTSTGGWFVSEGEAVLLAHNDGSCSFYDITNT 566

Query: 536 EDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTKDVR 595
           E+K+VYKPP  +S +IWRDCWIIRA GADGCSGRYVVAASAGN++D+GFCSWDFY+K+VR
Sbjct: 567 EEKSVYKPPAGISPNIWRDCWIIRAPGADGCSGRYVVAASAGNTMDAGFCSWDFYSKNVR 626

Query: 596 AFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVV 655
           AF IEG   T+SRT L PLP+N + +R A   +LVPET QWWYKPCGPLI S A+ Q+ V
Sbjct: 627 AFQIEG-AMTSSRTALAPLPHNIVQKRYAPGYMLVPETEQWWYKPCGPLIVSTATCQKTV 685

Query: 656 TVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAETISLWDVNSLNPQTLLS 715
            V+D+RD E+IM WEVQKPV  MDYSSPLQWRNRGK+V+AE E+ISLWDV S + Q LLS
Sbjct: 686 KVFDVRDSEEIMNWEVQKPVAAMDYSSPLQWRNRGKVVLAETESISLWDVASTSAQALLS 745

Query: 716 VSSCGRKISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCTPDSINILDFRHPAGIGLK 775
           V S G KISALHVNNTDAELGGGVRQR+SSAEAEGNDGVFCT DS+NILDFR P+GIG+K
Sbjct: 746 VHSPGHKISALHVNNTDAELGGGVRQRISSAEAEGNDGVFCTTDSVNILDFRSPSGIGIK 805

Query: 776 IPKFGVNAQSVFSRGDSIFLGCCNVRSTGKK-QPSSQVQQFSLRKQRLMNTYSLPESNAH 834
           + K  + AQSVF+RGDS+++GC + RS GKK Q SS VQQFS+RKQ L  TY+LPESNAH
Sbjct: 806 LQKASLGAQSVFTRGDSVYVGCSSARSGGKKPQASSVVQQFSIRKQGLFCTYALPESNAH 865

Query: 835 SYHSAITQVWGNSNLVMGISGEGLFVFDALSNDGFQSFASDNSSIQKVREIIGPDDLFAP 894
            +H+A+TQVWGNSNLVM + G GLFVFDAL+++  QS + D    Q  REI+G DDL++P
Sbjct: 866 VHHTAVTQVWGNSNLVMAVCGLGLFVFDALNDEASQSSSVDTEGSQVFREIVGSDDLYSP 925

Query: 895 SFDYLASRVLLISRDRPALWRHL 917
           SFDY +SR LLISRDRPALW+ L
Sbjct: 926 SFDYSSSRALLISRDRPALWKQL 948

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800818|ref|XP_002868293.1| hypothetical protein ARALYDRAFT_493476 [Arabidopsis lyrata subsp. lyrata] gi|297314129|gb|EFH44552.1| hypothetical protein ARALYDRAFT_493476 [Arabidopsis lyrata subsp. lyrata]

 Score =  893 bits (2308), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/915 (55%), Positives = 629/915 (68%), Gaps = 55/915 (6%)

Query: 15  GSTGTKAVTPNSVSYKNPSPGLKKSSSGKENPKP------ITRSQKPVIKSVPRVEKAAV 68
           G   +++VTP  +S KNPSP L+KS S KENP P         +QKPV++ VPR++K+AV
Sbjct: 24  GKKPSRSVTPLPISSKNPSPALQKSLSSKENPNPKLSHRSFGSTQKPVLRPVPRIDKSAV 83

Query: 69  ESGDSRIRRSTSSAPRGRSQSPSEFIRVYSDLKKDRVSRVSVERKGSRDSSVKGAELGFN 128
             G+ R+ RSTSS  RGRS SPS+ IRV+SDL+K   SRV +  KG  D   K    GF 
Sbjct: 84  R-GEGRVTRSTSSGLRGRSSSPSDLIRVFSDLRKRNESRV-IGEKGESDQDKKS---GF- 137

Query: 129 EKRGFSELKSDKERKLSGVGVLGSNYNKGVNLGSNLGKSSGISVTSNFVSRNEKRSSDVG 188
           +  GF ++ S+ + + S V    ++    V + S+  K  G SV  N +S + K  + VG
Sbjct: 138 KSSGFKQVTSEIKVEPSRV-CEKTDEESIVPVKSS--KFEGSSVARNSIS-DPKEHALVG 193

Query: 189 LKVEKYDKVDVLNSENRLEKIDRSVGLGLNESDEKISRDSKVSETLKEKSLSEEGLSTKV 248
                     VL S+ ++EKI +   + L    + +    K  E  KE   +E   S+  
Sbjct: 194 ---SGEKSAVVLKSDCKIEKIGKGTSVALRR--KSLDNGGKAMEVSKEIRGNEG--SSNS 246

Query: 249 GVKFPSKLHEKLTFLEGKVKRIQSDIKRTKEMLDMNNPDATKLILSDIQEKISGIEKAMG 308
             K+PSKLHEKL FLEGKVK+I SDIK+TK+MLD+NNPD++K+I+SDIQ+KI+GIEK+M 
Sbjct: 247 AAKYPSKLHEKLAFLEGKVKKIASDIKKTKDMLDLNNPDSSKVIISDIQQKITGIEKSMS 306

Query: 309 NVAGDSGVKIVGSKGVGKNVEGSKIVEMSQDKIVDGVKGLVKGLKSEELEARLFPHHKLL 368
           +V                 ++G +  + +Q   V   K LVKGL  EELE RLFPH +LL
Sbjct: 307 HV-----------------IDGPEKNKTTQ---VTKAKTLVKGLNKEELEDRLFPHQRLL 346

Query: 369 RNRT-SKPASESSQ-SDELNDEGARSDLKVEEKLLSPIEENPIALQFLASLNKDENKVSA 426
           R+RT SK +S  S+  D +    A   + VEEK  +P+EEN IAL+FLASL+K+  KV+ 
Sbjct: 347 RSRTQSKTSSHVSKGHDSVEPNKA---VNVEEKPSAPVEENVIALEFLASLDKE--KVTF 401

Query: 427 KSGLVDLECDEVFETDEAAKSGEKGLSCMFSGKGEAELELTSDERLDEFDDQENRQAFVI 486
            S    LE  EV E D    S E  +S   +        L ++E L+E DD+ENR+   +
Sbjct: 402 MSDQNALENLEVQEMDTEEPSKENDVSKDVNLTSNLNEILRANEALEEIDDEENREEMEL 461

Query: 487 DEGIEDTCTYQLNEIGQRTSTGGWFVSEGESVLLAHDDGSCSYYDITNCEDKAVYKPPTA 546
           +E  E  C YQLN+IG RTSTGGWFVSEGE+V+LAHDDGSCSYYD+ N E K+VY PP  
Sbjct: 462 EEIDEG-CMYQLNDIGSRTSTGGWFVSEGEAVILAHDDGSCSYYDVANSEVKSVYSPPDG 520

Query: 547 VSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTKDVRAFHIEGEGKTT 606
           +S + WRDCW++RA GADGCSGRYVVAASAGN+L+SGFCSWDFYTKD++A HIE      
Sbjct: 521 ISPNTWRDCWVVRAPGADGCSGRYVVAASAGNTLESGFCSWDFYTKDIKALHIEDGSSRV 580

Query: 607 SRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQI 666
           SRT L PLPNN  + RN  +  +VPET QWWY+PCGPLIAS  S Q VV V+DIRDGEQI
Sbjct: 581 SRTALAPLPNNTSHGRNTPACAVVPETQQWWYRPCGPLIASTGSFQSVVKVFDIRDGEQI 640

Query: 667 MQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAETISLWDVNSLNPQTLLSVSSCGRKISAL 726
           M+WEVQ PV  +DYSSPLQWRNRGKLV+AE+E IS+WDVNSL+P+   ++SS GRKISA 
Sbjct: 641 MRWEVQDPVSALDYSSPLQWRNRGKLVIAESEAISVWDVNSLHPEAQHTISSSGRKISAF 700

Query: 727 HVNNTDAELGGGVRQRVSSAEAEGNDGVFCTPDSINILDFRHPAGIGLKIPKFGVNAQSV 786
           H+NNTDAE+GGGVRQRVSS +AEGNDGVFCT DSINILDFR+P+GIG KIPK GVNAQ V
Sbjct: 701 HINNTDAEVGGGVRQRVSSLDAEGNDGVFCTSDSINILDFRNPSGIGAKIPKLGVNAQCV 760

Query: 787 FSRGDSIFLGCCNVRSTGKKQ--PSSQVQQFSLRKQRLMNTYSLPESNAHSYHSAITQVW 844
            SRGDS+FLGC N +ST KK    SSQVQQFS+RKQRL++TYSLP+SN+H +HSAITQVW
Sbjct: 761 SSRGDSVFLGCTNQKSTAKKHMASSSQVQQFSIRKQRLVSTYSLPDSNSHPHHSAITQVW 820

Query: 845 GNSNLVMGISGEGLFVFDALSNDGFQS--FASDNSSIQKVREIIGPDDLFAPSFDYLASR 902
           GNSN VM  SG GLFVFD    +  Q     S+  S+Q VREIIGP+DL+ PSFDY   R
Sbjct: 821 GNSNFVMATSGMGLFVFDTAKEETLQQQPLTSERGSVQTVREIIGPNDLYCPSFDYSGCR 880

Query: 903 VLLISRDRPALWRHL 917
           VLLISRDRPALWR+L
Sbjct: 881 VLLISRDRPALWRYL 895

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79474482|ref|NP_193167.3| transducin/WD40 domain-containing protein-like protein [Arabidopsis thaliana] gi|332658016|gb|AEE83416.1| transducin/WD40 domain-containing protein-like protein [Arabidopsis thaliana]

 Score =  881 bits (2277), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/919 (53%), Positives = 624/919 (67%), Gaps = 66/919 (7%)

Query: 15  GSTGTKAVTPNSVSYKNPSPGLKKSSSGKENPKP------ITRSQKPVIKSVPRVEKAAV 68
           G    ++VTP  +S KN +P L+KS S KENP P         +QKPV++ VPR++K+AV
Sbjct: 24  GKKPLRSVTPLPISSKNSNPALQKSLSSKENPNPKLSHRSFGSTQKPVLRPVPRIDKSAV 83

Query: 69  ESGDSRIRRSTSSAPRGRSQSPSEFIRVYSDLKKDRVSRVSVERKGS---RDSSVKGAEL 125
            SG+ R+ RSTSS  RGRS SPS+ IRV+SDL+K   SRV  E+  S   + S +K +  
Sbjct: 84  -SGEGRVTRSTSSGLRGRSSSPSDLIRVFSDLRKRNESRVIGEKGESGQDKKSGLKSS-- 140

Query: 126 GFNEKRGFSELKSDKERKLSGVGVLGSNYNKGVNLGSNLGKSSGISVTSNFVSRNEKRSS 185
           GF  K+G SE+K +          +    ++G +   N  K  G SV  N +S + K  +
Sbjct: 141 GF--KQGTSEIKVEPSS-------VCEKADEGSSCPVNSSKFEGSSVARNSIS-DPKAHA 190

Query: 186 DVGLKVEKYDKVDVLNSENRLEKIDRSVGLGLN-ESDEKISRDSKVSETLKEKSLSEEGL 244
            VG           L S++++EK  +   + L  +S + + +  ++S+ ++      EG 
Sbjct: 191 LVG---SGEKSTVALKSDSKIEKTGKGTSVALRRKSLDNVGKAMEMSKDIR----GNEG- 242

Query: 245 STKVGVKFPSKLHEKLTFLEGKVKRIQSDIKRTKEMLDMNNPDATKLILSDIQEKISGIE 304
           S+    K+PSKLHEKL FLEGKVK+I SDIK+TK+MLD+NNPD++K+I+SDI +KI+GIE
Sbjct: 243 SSNSTAKYPSKLHEKLAFLEGKVKKIASDIKKTKDMLDLNNPDSSKVIISDIHQKITGIE 302

Query: 305 KAMGNVAGDSGVKIVGSKGVGKNVEGSKIVEMSQDKIVDGVKGLVKGLKSEELEARLFPH 364
           K+M                       S +++  +       K  VKGL  EELE RL PH
Sbjct: 303 KSM-----------------------SHVIDGPEKNKTTKAKSSVKGLNKEELEDRLLPH 339

Query: 365 HKLLRNRT-SKPASESSQ-SDELNDEGARSDLKVEEKLLSPIEENPIALQFLASLNKDEN 422
            +LLR+RT SK +S  S+  D +    A   +  EEK  +P+EEN IAL+FLASL+K+  
Sbjct: 340 QRLLRSRTQSKTSSHVSKGHDSVESNKA---VNAEEKPSAPVEENAIALEFLASLDKE-- 394

Query: 423 KVSAKSGLVDLECDEVFETDEAAKSGEKGLSCMFSGKGEAELELTSDERLDEFDDQENRQ 482
           KV+  S    LE  EV E D    S E  +S   +        L ++E L+E DD+ENR+
Sbjct: 395 KVTFMSDQNALENLEVQEMDTEEPSKENDVSKDVNLTSNLTEILRANEALEEIDDEENRE 454

Query: 483 AFVIDEGIEDTCTYQLNEIGQRTSTGGWFVSEGESVLLAHDDGSCSYYDITNCEDKAVYK 542
              ++E I+D C YQLN+IG +TSTGGWFVSEGE+V+LAHDDGSCSYYD+ N E K+VY 
Sbjct: 455 EMELEE-IDDGCMYQLNDIGSKTSTGGWFVSEGEAVILAHDDGSCSYYDVANSEVKSVYS 513

Query: 543 PPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTKDVRAFHIEGE 602
           PP  +S + WRDCW++RA GADGCSGRYVVAASAGN+L+SGFCSWDFYTKD++A HIE  
Sbjct: 514 PPDGISPNTWRDCWVVRAPGADGCSGRYVVAASAGNTLESGFCSWDFYTKDIKALHIEDG 573

Query: 603 GKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRD 662
               SRT L PLPNN  + RN  +  +VPET QWWY+PCGPLIAS  S Q +V V+DIRD
Sbjct: 574 SSRVSRTALAPLPNNTSHGRNTPACAVVPETQQWWYRPCGPLIASTGSFQSIVKVFDIRD 633

Query: 663 GEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAETISLWDVNSLNPQTLLSVSSCGRK 722
           GEQIM+W VQ PV  +DYSSPLQWRNRGKLV+AE E IS+WDVNSL+P+   ++SS GRK
Sbjct: 634 GEQIMKWGVQNPVSALDYSSPLQWRNRGKLVIAETEAISVWDVNSLHPEAQHTISSSGRK 693

Query: 723 ISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCTPDSINILDFRHPAGIGLKIPKFGVN 782
           ISA H+NNTDAE+GGGVRQRVSS +AEGNDGVFCT DSINILDFR+P+GIG KIPK GVN
Sbjct: 694 ISAFHINNTDAEVGGGVRQRVSSLDAEGNDGVFCTSDSINILDFRNPSGIGAKIPKLGVN 753

Query: 783 AQSVFSRGDSIFLGCCNVRSTGKKQ--PSSQVQQFSLRKQRLMNTYSLPESNAHSYHSAI 840
           AQ V SRGDS+FLGC N +ST KKQ   SSQVQQFS+RKQRL++TYSLP+SN+H +HSAI
Sbjct: 754 AQCVSSRGDSVFLGCTNQKSTVKKQMASSSQVQQFSIRKQRLVSTYSLPDSNSHPHHSAI 813

Query: 841 TQVWGNSNLVMGISGEGLFVFDALSNDGFQS--FASDNSSIQKVREIIGPDDLFAPSFDY 898
           TQVWGNSN VM  SG GLFVFD    +  Q     SD  S+Q VREIIGP+D++ PSFDY
Sbjct: 814 TQVWGNSNFVMATSGMGLFVFDTAKEETLQQQPLTSDYGSVQTVREIIGPNDMYCPSFDY 873

Query: 899 LASRVLLISRDRPALWRHL 917
              RVLLISRDRPALWR+L
Sbjct: 874 SGCRVLLISRDRPALWRYL 892

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79587640|ref|NP_849378.2| transducin/WD40 domain-containing protein-like protein [Arabidopsis thaliana] gi|332658015|gb|AEE83415.1| transducin/WD40 domain-containing protein-like protein [Arabidopsis thaliana]

 Score =  866 bits (2238), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/946 (52%), Positives = 623/946 (65%), Gaps = 93/946 (9%)

Query: 15  GSTGTKAVTPNSVSYKNPSPGLKKSSSGKENPKP------ITRSQKPVIKSVPRVEKAAV 68
           G    ++VTP  +S KN +P L+KS S KENP P         +QKPV++ VPR++K+AV
Sbjct: 24  GKKPLRSVTPLPISSKNSNPALQKSLSSKENPNPKLSHRSFGSTQKPVLRPVPRIDKSAV 83

Query: 69  ESGDSRIRRSTSSAPRGRSQSPSEFIRVYSDLKKDRVSRVSVERKGS---RDSSVKGAEL 125
            SG+ R+ RSTSS  RGRS SPS+ IRV+SDL+K   SRV  E+  S   + S +K +  
Sbjct: 84  -SGEGRVTRSTSSGLRGRSSSPSDLIRVFSDLRKRNESRVIGEKGESGQDKKSGLKSS-- 140

Query: 126 GFNEKRGFSELKSDKERKLSGVGVLGSNYNKGVNLGSNLGKSSGISVTSNFVSRNEKRSS 185
           GF  K+G SE+K +          +    ++G +   N  K  G SV  N +S + K  +
Sbjct: 141 GF--KQGTSEIKVEPSS-------VCEKADEGSSCPVNSSKFEGSSVARNSIS-DPKAHA 190

Query: 186 DVGLKVEKYDKVDVLNSENRLEKIDRSVGLGLN-ESDEKISRDSKVSETLKEKSLSEEGL 244
            VG           L S++++EK  +   + L  +S + + +  ++S+ ++      EG 
Sbjct: 191 LVG---SGEKSTVALKSDSKIEKTGKGTSVALRRKSLDNVGKAMEMSKDIR----GNEG- 242

Query: 245 STKVGVKFPSKLHEKLTFLEGKVKRIQSDIKRTKEMLDMNNPDATKLILSDIQEKISGIE 304
           S+    K+PSKLHEKL FLEGKVK+I SDIK+TK+MLD+NNPD++K+I+SDI +KI+GIE
Sbjct: 243 SSNSTAKYPSKLHEKLAFLEGKVKKIASDIKKTKDMLDLNNPDSSKVIISDIHQKITGIE 302

Query: 305 KAMGNVAGDSGVKIVGSKGVGKNVEGSKIVEMSQDKIVDGVKGLVKGLKSEELEARLFPH 364
           K+M                       S +++  +       K  VKGL  EELE RL PH
Sbjct: 303 KSM-----------------------SHVIDGPEKNKTTKAKSSVKGLNKEELEDRLLPH 339

Query: 365 HKLLRNRT-SKPASESSQ-SDELNDEGARSDLKVEEKLLSPIEENPIALQFLASLNKDEN 422
            +LLR+RT SK +S  S+  D +    A   +  EEK  +P+EEN IAL+FLASL+K+  
Sbjct: 340 QRLLRSRTQSKTSSHVSKGHDSVESNKA---VNAEEKPSAPVEENAIALEFLASLDKE-- 394

Query: 423 KVSAKSGLVDLECDEVFETDEAAKSGEKGLSCMFSGKGEAELELTSDERLDEFDDQENRQ 482
           KV+  S    LE  EV E D    S E  +S   +        L ++E L+E DD+ENR+
Sbjct: 395 KVTFMSDQNALENLEVQEMDTEEPSKENDVSKDVNLTSNLTEILRANEALEEIDDEENRE 454

Query: 483 AFVIDEGIEDTCTYQLNEIGQRTSTGGWFVSEGESVLLAHDDGSCSYYDITNCE------ 536
             +  E I+D C YQLN+IG +TSTGGWFVSEGE+V+LAHDDGSCSYYD+ N E      
Sbjct: 455 E-MELEEIDDGCMYQLNDIGSKTSTGGWFVSEGEAVILAHDDGSCSYYDVANSEFMVNEC 513

Query: 537 ---------------------DKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAAS 575
                                 K+VY PP  +S + WRDCW++RA GADGCSGRYVVAAS
Sbjct: 514 NSLSIWVRLYEVTGVFGFVHYVKSVYSPPDGISPNTWRDCWVVRAPGADGCSGRYVVAAS 573

Query: 576 AGNSLDSGFCSWDFYTKDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQ 635
           AGN+L+SGFCSWDFYTKD++A HIE      SRT L PLPNN  + RN  +  +VPET Q
Sbjct: 574 AGNTLESGFCSWDFYTKDIKALHIEDGSSRVSRTALAPLPNNTSHGRNTPACAVVPETQQ 633

Query: 636 WWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVA 695
           WWY+PCGPLIAS  S Q +V V+DIRDGEQIM+W VQ PV  +DYSSPLQWRNRGKLV+A
Sbjct: 634 WWYRPCGPLIASTGSFQSIVKVFDIRDGEQIMKWGVQNPVSALDYSSPLQWRNRGKLVIA 693

Query: 696 EAETISLWDVNSLNPQTLLSVSSCGRKISALHVNNTDAELGGGVRQRVSSAEAEGNDGVF 755
           E E IS+WDVNSL+P+   ++SS GRKISA H+NNTDAE+GGGVRQRVSS +AEGNDGVF
Sbjct: 694 ETEAISVWDVNSLHPEAQHTISSSGRKISAFHINNTDAEVGGGVRQRVSSLDAEGNDGVF 753

Query: 756 CTPDSINILDFRHPAGIGLKIPKFGVNAQSVFSRGDSIFLGCCNVRSTGKKQ--PSSQVQ 813
           CT DSINILDFR+P+GIG KIPK GVNAQ V SRGDS+FLGC N +ST KKQ   SSQVQ
Sbjct: 754 CTSDSINILDFRNPSGIGAKIPKLGVNAQCVSSRGDSVFLGCTNQKSTVKKQMASSSQVQ 813

Query: 814 QFSLRKQRLMNTYSLPESNAHSYHSAITQVWGNSNLVMGISGEGLFVFDALSNDGFQS-- 871
           QFS+RKQRL++TYSLP+SN+H +HSAITQVWGNSN VM  SG GLFVFD    +  Q   
Sbjct: 814 QFSIRKQRLVSTYSLPDSNSHPHHSAITQVWGNSNFVMATSGMGLFVFDTAKEETLQQQP 873

Query: 872 FASDNSSIQKVREIIGPDDLFAPSFDYLASRVLLISRDRPALWRHL 917
             SD  S+Q VREIIGP+D++ PSFDY   RVLLISRDRPALWR+L
Sbjct: 874 LTSDYGSVQTVREIIGPNDMYCPSFDYSGCRVLLISRDRPALWRYL 919

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2244787|emb|CAB10210.1| hypothetical protein [Arabidopsis thaliana] gi|7268136|emb|CAB78473.1| hypothetical protein [Arabidopsis thaliana]

 Score =  832 bits (2148), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/927 (51%), Positives = 607/927 (65%), Gaps = 93/927 (10%)

Query: 15  GSTGTKAVTPNSVSYKNPSPGLKKSSSGKENPKP------ITRSQKPVIKSVPRVEKAAV 68
           G    ++VTP  +S KN +P L+KS S KENP P         +QKPV++ VPR++K+AV
Sbjct: 69  GKKPLRSVTPLPISSKNSNPALQKSLSSKENPNPKLSHRSFGSTQKPVLRPVPRIDKSAV 128

Query: 69  ESGDSRIRRSTSSAPRGRSQSPSEFIRVYSDLKKDRVSRVSVERKGS---RDSSVKGAEL 125
            SG+ R+ RSTSS  RGRS SPS+ IRV+SDL+K   SRV  E+  S   + S +K +  
Sbjct: 129 -SGEGRVTRSTSSGLRGRSSSPSDLIRVFSDLRKRNESRVIGEKGESGQDKKSGLKSS-- 185

Query: 126 GFNEKRGFSELKSDKERKLSGVGVLGSNYNKGVNLGSNLGKSSGISVTSNFVSRNEKRSS 185
           GF  K+G SE+K +          +    ++G +   N  K  G SV  N +S + K  +
Sbjct: 186 GF--KQGTSEIKVEPSS-------VCEKADEGSSCPVNSSKFEGSSVARNSIS-DPKAHA 235

Query: 186 DVGLKVEKYDKVDVLNSENRLEKIDRSVGLGLN-ESDEKISRDSKVSETLKEKSLSEEGL 244
            VG           L S++++EK  +   + L  +S + + +  ++S+ ++      EG 
Sbjct: 236 LVG---SGEKSTVALKSDSKIEKTGKGTSVALRRKSLDNVGKAMEMSKDIR----GNEG- 287

Query: 245 STKVGVKFPSKLHEKLTFLEGKVKRIQSDIKRTKEMLDMNNPDATKLILSDIQEKISGIE 304
           S+    K+PSKLHEKL FLEGKVK+I SDIK+TK+MLD+NNPD++K+I+SDI +KI+GIE
Sbjct: 288 SSNSTAKYPSKLHEKLAFLEGKVKKIASDIKKTKDMLDLNNPDSSKVIISDIHQKITGIE 347

Query: 305 KAMGNVAGDSGVKIVGSKGVGKNVEGSKIVEMSQDKIVDGVKGLVKGLKSEELEARLFPH 364
           K+M                       S +++  +       K  VKGL  EELE RL PH
Sbjct: 348 KSM-----------------------SHVIDGPEKNKTTKAKSSVKGLNKEELEDRLLPH 384

Query: 365 HKLLRNRT-SKPASESSQ-SDELNDEGARSDLKVEEKLLSPIEENPIALQFLASLNKDEN 422
            +LLR+RT SK +S  S+  D +    A   +  EEK  +P+EEN IAL+FLASL+K+  
Sbjct: 385 QRLLRSRTQSKTSSHVSKGHDSVESNKA---VNAEEKPSAPVEENAIALEFLASLDKE-- 439

Query: 423 KVSAKSGLVDLECDEVFETDEAAKSGEKGLSCMFSGKGEAELELTSDERLDEFDDQENRQ 482
           KV+  S    LE  EV E D    S E  +S   +        L ++E L+E DD+ENR+
Sbjct: 440 KVTFMSDQNALENLEVQEMDTEEPSKENDVSKDVNLTSNLTEILRANEALEEIDDEENRE 499

Query: 483 AFVIDEGIEDTCTYQLNEIGQRTSTGGWFVSEGESVLLAHDDGSCSYYDITNCED----- 537
             +  E I+D C YQLN+IG +TSTGGWFVSEGE+V+LAHDDGSCSYYD+ N E      
Sbjct: 500 E-MELEEIDDGCMYQLNDIGSKTSTGGWFVSEGEAVILAHDDGSCSYYDVANSEFMVNEC 558

Query: 538 ----------------------KAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAAS 575
                                 K+VY PP  +S + WRDCW++RA GADGCSGRYVVAAS
Sbjct: 559 NSLSIWVRLYEVTGVFGFVHYVKSVYSPPDGISPNTWRDCWVVRAPGADGCSGRYVVAAS 618

Query: 576 AGNSLDSGFCSWDFYTKDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQ 635
           AGN+L+SGFCSWDFYTKD++A HIE      SRT L PLPNN  + RN  +  +VPET Q
Sbjct: 619 AGNTLESGFCSWDFYTKDIKALHIEDGSSRVSRTALAPLPNNTSHGRNTPACAVVPETQQ 678

Query: 636 WWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVA 695
           WWY+PCGPLIAS  S Q +V V+DIRDGEQIM+W VQ PV  +DYSSPLQWRNRGKLV+A
Sbjct: 679 WWYRPCGPLIASTGSFQSIVKVFDIRDGEQIMKWGVQNPVSALDYSSPLQWRNRGKLVIA 738

Query: 696 EAETISLWDVNSLNPQTLLSVSSCGRKISALHVNNTDAELGGGVRQRVSSAEAEGNDGVF 755
           E E IS+WDVNSL+P+   ++SS GRKISA H+NNTDAE+GGGVRQRVSS +AEGNDGVF
Sbjct: 739 ETEAISVWDVNSLHPEAQHTISSSGRKISAFHINNTDAEVGGGVRQRVSSLDAEGNDGVF 798

Query: 756 CTPDSINILDFRHPAGIGLKIPKFGVNAQSVFSRGDSIFLGCCNVRSTGKKQ--PSSQVQ 813
           CT DSINILDFR+P+GIG KIPK GVNAQ V SRGDS+FLGC N +ST KKQ   SSQVQ
Sbjct: 799 CTSDSINILDFRNPSGIGAKIPKLGVNAQCVSSRGDSVFLGCTNQKSTVKKQMASSSQVQ 858

Query: 814 QFSLRKQRLMNTYSLPESNAHSYHSAITQVWGNSNLVMGISGEGLFVFDALSNDGFQS-- 871
           QFS+RKQRL++TYSLP+SN+H +HSAITQVWGNSN VM  SG GLFVFD    +  Q   
Sbjct: 859 QFSIRKQRLVSTYSLPDSNSHPHHSAITQVWGNSNFVMATSGMGLFVFDTAKEETLQQQP 918

Query: 872 FASDNSSIQKVREIIGPDDLFAPSFDY 898
             SD  S+Q VREIIGP+D++ PSFDY
Sbjct: 919 LTSDYGSVQTVREIIGPNDMYCPSFDY 945

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	918
TAIR|locus:2129610	920	AT4G14310 [Arabidopsis thalian	0.947	0.945	0.449	7.4e-185

TAIR|locus:2129610 AT4G14310 [Arabidopsis thaliana (taxid:3702)]

 Score = 1793 (636.2 bits), Expect = 7.4e-185, P = 7.4e-185
 Identities = 418/929 (44%), Positives = 551/929 (59%)

Query:    15 GSTGTKAVTPNSVSYXXXXXXXXXXXXXXENPKPIT--RSQKPVIKSVPR-VEKA--AVE 69
             G    ++VTP  +S               ENP P    RS     K V R V +   +  
Sbjct:    24 GKKPLRSVTPLPISSKNSNPALQKSLSSKENPNPKLSHRSFGSTQKPVLRPVPRIDKSAV 83

Query:    70 SGDSRIRRSTSSAPRGRSQSPSEFIRVYSDLKKDRVSRVSVERKGSRDSSVKGAELGFNE 129
             SG+ R+ RSTSS  RGRS SPS+ IRV+SDL+K   SRV +  KG      K        
Sbjct:    84 SGEGRVTRSTSSGLRGRSSSPSDLIRVFSDLRKRNESRV-IGEKGESGQDKKSGLKSSGF 142

Query:   130 KRGFSELKSDKERKLSGVGVLGSNYNKGVNLGSNLGKSSGISVTSNFVSRNEKRSSDVGL 189
             K+G SE+K +     S V       ++G +   N  K  G SV  N +S + K  + VG 
Sbjct:   143 KQGTSEIKVEP----SSVC---EKADEGSSCPVNSSKFEGSSVARNSIS-DPKAHALVG- 193

Query:   190 KVEKYDKVDVLNSENRLEKIDRSVGLGLNESDEKISRDXXXXXXXXXXXXXXXXXXXXVG 249
               EK      L S++++EK  +   + L       S D                      
Sbjct:   194 SGEK--STVALKSDSKIEKTGKGTSVALRRK----SLDNVGKAMEMSKDIRGNEGSSNST 247

Query:   250 VKFPSKLHEKLTFLEGKVKRIQSDIKRTKEMLDMNNPDATKLILSDIQEKISGIEKAMGN 309
              K+PSKLHEKL FLEGKVK+I SDIK+TK+MLD+NNPD++K+I+SDI +KI+GIEK+M +
Sbjct:   248 AKYPSKLHEKLAFLEGKVKKIASDIKKTKDMLDLNNPDSSKVIISDIHQKITGIEKSMSH 307

Query:   310 VAXXXXXXXXXXXXXXXNVEGSKIVEMSQDKIVDGVKGLVKGLKSEELEARLFPHHKLLR 369
             V                +V+G    E+ +D+++   + L++     +  + +   H  + 
Sbjct:   308 VIDGPEKNKTTKAKS--SVKGLNKEEL-EDRLLPHQR-LLRSRTQSKTSSHVSKGHDSVE 363

Query:   370 NRTSKPASESSQSDELNDEGARSDLKV--EEKLLSPIEENPIALQFLASLNKDE-NKVSA 426
             +  +  A E   +    +  A   L    +EK+    ++N +    +  ++ +E +K + 
Sbjct:   364 SNKAVNAEEKPSAPVEENAIALEFLASLDKEKVTFMSDQNALENLEVQEMDTEEPSKEND 423

Query:   427 KSGLVDLECD--EVFETDEAAKSGEKGLSCMFSGKGEAELELTSDE---RLDEFDDQENR 481
              S  V+L  +  E+   +EA +  +         + E ELE   D    +L++   + + 
Sbjct:   424 VSKDVNLTSNLTEILRANEALEEIDDE-----ENREEMELEEIDDGCMYQLNDIGSKTST 478

Query:   482 QAFVIDEGIEDTCTYQLNEIGQRTSTGGWFVSEGESVLLAHDDGSCSY----YDITNCED 537
               + + EG         ++ G   S   + V+  E   + ++  S S     Y++T    
Sbjct:   479 GGWFVSEG---EAVILAHDDG---SCSYYDVANSE--FMVNECNSLSIWVRLYEVTGVFG 530

Query:   538 -----KAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTK 592
                  K+VY PP  +S + WRDCW++RA GADGCSGRYVVAASAGN+L+SGFCSWDFYTK
Sbjct:   531 FVHYVKSVYSPPDGISPNTWRDCWVVRAPGADGCSGRYVVAASAGNTLESGFCSWDFYTK 590

Query:   593 DVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQ 652
             D++A HIE      SRT L PLPNN  + RN  +  +VPET QWWY+PCGPLIAS  S Q
Sbjct:   591 DIKALHIEDGSSRVSRTALAPLPNNTSHGRNTPACAVVPETQQWWYRPCGPLIASTGSFQ 650

Query:   653 RVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAETISLWDVNSLNPQT 712
              +V V+DIRDGEQIM+W VQ PV  +DYSSPLQWRNRGKLV+AE E IS+WDVNSL+P+ 
Sbjct:   651 SIVKVFDIRDGEQIMKWGVQNPVSALDYSSPLQWRNRGKLVIAETEAISVWDVNSLHPEA 710

Query:   713 LLSVSSCGRKISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCTPDSINILDFRHPAGI 772
               ++SS GRKISA H+NNTDAE+GGGVRQRVSS +AEGNDGVFCT DSINILDFR+P+GI
Sbjct:   711 QHTISSSGRKISAFHINNTDAEVGGGVRQRVSSLDAEGNDGVFCTSDSINILDFRNPSGI 770

Query:   773 GLKIPKFGVNAQSVFSRGDSIFLGCCNVRSTGKKQ--PSSQVQQFSLRKQRLMNTYSLPE 830
             G KIPK GVNAQ V SRGDS+FLGC N +ST KKQ   SSQVQQFS+RKQRL++TYSLP+
Sbjct:   771 GAKIPKLGVNAQCVSSRGDSVFLGCTNQKSTVKKQMASSSQVQQFSIRKQRLVSTYSLPD 830

Query:   831 SNAHSYHSAITQVWGNSNLVMGISGEGLFVFDALSNDGFQS--FASDNSSIQKVREIIGP 888
             SN+H +HSAITQVWGNSN VM  SG GLFVFD    +  Q     SD  S+Q VREIIGP
Sbjct:   831 SNSHPHHSAITQVWGNSNFVMATSGMGLFVFDTAKEETLQQQPLTSDYGSVQTVREIIGP 890

Query:   889 DDLFAPSFDYLASRVLLISRDRPALWRHL 917
             +D++ PSFDY   RVLLISRDRPALWR+L
Sbjct:   891 NDMYCPSFDYSGCRVLLISRDRPALWRYL 919


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.130   0.372    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      918       869   0.00084  122 3  11 23  0.47    34
                                                     37  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  625 (66 KB)
  Total size of DFA:  404 KB (2196 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  84.39u 0.14s 84.53t   Elapsed:  00:00:05
  Total cpu time:  84.39u 0.14s 84.53t   Elapsed:  00:00:05
  Start:  Tue May 21 04:01:56 2013   End:  Tue May 21 04:02:01 2013

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005618 "cell wall" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	918
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.55
PLN00181	793	protein SPA1-RELATED; Provisional	98.22
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.14
PTZ00421	493	coronin; Provisional	97.4
PLN00181	793	protein SPA1-RELATED; Provisional	97.37
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	96.94
PTZ00420	568	coronin; Provisional	96.46
PTZ00420	568	coronin; Provisional	96.03
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	95.77
KOG0278	334	consensus Serine/threonine kinase receptor-associa	95.41
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	95.35
PTZ00421	493	coronin; Provisional	95.29
KOG0266	456	consensus WD40 repeat-containing protein [General	95.07
KOG0647	347	consensus mRNA export protein (contains WD40 repea	94.9
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	94.39
KOG0266	456	consensus WD40 repeat-containing protein [General	93.12
PRK11028	330	6-phosphogluconolactonase; Provisional	92.74
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	91.9
KOG0288	459	consensus WD40 repeat protein TipD [General functi	90.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	90.33
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	89.84
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	89.83
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	89.49
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	89.13
COG2319	466	FOG: WD40 repeat [General function prediction only	88.7
PRK11028	330	6-phosphogluconolactonase; Provisional	87.93
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	86.81
KOG0310	487	consensus Conserved WD40 repeat-containing protein	85.51
KOG0295	406	consensus WD40 repeat-containing protein [Function	85.43
KOG0279	315	consensus G protein beta subunit-like protein [Sig	85.4
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	85.11
KOG0270	463	consensus WD40 repeat-containing protein [Function	84.94
COG2319	466	FOG: WD40 repeat [General function prediction only	84.73
KOG0315	311	consensus G-protein beta subunit-like protein (con	84.55
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	84.05
KOG0263	707	consensus Transcription initiation factor TFIID, s	82.18
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	82.17
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	82.05
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	81.71
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	80.92
KOG0318	603	consensus WD40 repeat stress protein/actin interac	80.34

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.55  E-value=6.3e-05  Score=65.10  Aligned_cols=241  Identities=20%  Similarity=0.333  Sum_probs=134.1

Q ss_pred             CceEEeeecCCCcceeeccCccccceecCCCccCCCCccceEEEecCCCCCCCccEEEEeccCCCCcccccccccccc-c
Q 002470          515 GESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTK-D  593 (918)
Q Consensus       515 GE~vLLAHdDgsCSyyDiAN~EeKavYkpPs~vs~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWDfYsk-~  593 (918)
                      |.-++.+..||.+..||+.+.+....+..+.   ..++.=+|   .|  ||   +++++++.    +....-||..+. .
T Consensus        21 ~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~---~~i~~~~~---~~--~~---~~l~~~~~----~~~i~i~~~~~~~~   85 (289)
T cd00200          21 GKLLATGSGDGTIKVWDLETGELLRTLKGHT---GPVRDVAA---SA--DG---TYLASGSS----DKTIRLWDLETGEC   85 (289)
T ss_pred             CCEEEEeecCcEEEEEEeeCCCcEEEEecCC---cceeEEEE---CC--CC---CEEEEEcC----CCeEEEEEcCcccc
Confidence            5667777889999999998776444443322   12222222   22  22   77777765    333455665542 1


Q ss_pred             eeeEEeecCCccccceeeccCCCCccccccccccccccccccceeccccceeeecccccceeEEEEccCCceEEEEe-ec
Q 002470          594 VRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWE-VQ  672 (918)
Q Consensus       594 v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWe-vq  672 (918)
                      ++.|                 ...    .....++      . |. |.+.+|+++ +....|.+||++.++.+.... -.
T Consensus        86 ~~~~-----------------~~~----~~~i~~~------~-~~-~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~  135 (289)
T cd00200          86 VRTL-----------------TGH----TSYVSSV------A-FS-PDGRILSSS-SRDKTIKVWDVETGKCLTTLRGHT  135 (289)
T ss_pred             eEEE-----------------ecc----CCcEEEE------E-Ec-CCCCEEEEe-cCCCeEEEEECCCcEEEEEeccCC
Confidence            1111                 100    0001111      1 22 226666654 467889999999999988887 34


Q ss_pred             cceeeeccCCccceeccccEEEee--cceeeeeecCCCCcceeeeeecCCceeEEEEeecccccccCccceeeccccccC
Q 002470          673 KPVLTMDYSSPLQWRNRGKLVVAE--AETISLWDVNSLNPQTLLSVSSCGRKISALHVNNTDAELGGGVRQRVSSAEAEG  750 (918)
Q Consensus       673 kpV~~M~YSSPlQWRnrgKvViAe--~e~islWDVnSL~pq~llsV~~~Gkki~aLHV~NtDAE~gGGVRQRvSSse~Eg  750 (918)
                      .+|.+|.|+.-      ++++++.  ...|.+||+++..+..  .+......|.++......       ++         
T Consensus       136 ~~i~~~~~~~~------~~~l~~~~~~~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~-------~~---------  191 (289)
T cd00200         136 DWVNSVAFSPD------GTFVASSSQDGTIKLWDLRTGKCVA--TLTGHTGEVNSVAFSPDG-------EK---------  191 (289)
T ss_pred             CcEEEEEEcCc------CCEEEEEcCCCcEEEEEccccccce--eEecCccccceEEECCCc-------CE---------
Confidence            57888877643      6666666  5689999998655433  333444467777765432       11         


Q ss_pred             CCceeec-CCceeeeeecCCcccccccccCC-CccceeeecCCeEEEeeeeeccccccCCcccceeceeccceeeeeeec
Q 002470          751 NDGVFCT-PDSINILDFRHPAGIGLKIPKFG-VNAQSVFSRGDSIFLGCCNVRSTGKKQPSSQVQQFSLRKQRLMNTYSL  828 (918)
Q Consensus       751 nDGvfcT-~dsiNvlDFR~PsGIGlKip~~g-~~~qSvfsrGDsVf~G~t~~~~~~k~q~~s~vqq~SlRk~~Lv~tYsl  828 (918)
                        =++|+ +..|.++|++...=+. .+..+. .-..-.|+....+++++.         ....|.-|.++.++++.++. 
T Consensus       192 --l~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~---------~~~~i~i~~~~~~~~~~~~~-  258 (289)
T cd00200         192 --LLSSSSDGTIKLWDLSTGKCLG-TLRGHENGVNSVAFSPDGYLLASGS---------EDGTIRVWDLRTGECVQTLS-  258 (289)
T ss_pred             --EEEecCCCcEEEEECCCCceec-chhhcCCceEEEEEcCCCcEEEEEc---------CCCcEEEEEcCCceeEEEcc-
Confidence              12222 3467888887633222 221222 222334555444444443         12457788888888877765 


Q ss_pred             CCCCcccccccceee
Q 002470          829 PESNAHSYHSAITQV  843 (918)
Q Consensus       829 PesNah~h~saItQV  843 (918)
                            .|...|+.+
T Consensus       259 ------~~~~~i~~~  267 (289)
T cd00200         259 ------GHTNSVTSL  267 (289)
T ss_pred             ------ccCCcEEEE
Confidence                  334456654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=98.22  E-value=0.00029  Score=78.98  Aligned_cols=277  Identities=15%  Similarity=0.240  Sum_probs=148.1

Q ss_pred             ecCceEEeeecCCCcceeeccCccc--cceecCCCcc--CCCCccceEEEecCCCCCCCccEEEEeccCCCCcccccccc
Q 002470          513 SEGESVLLAHDDGSCSYYDITNCED--KAVYKPPTAV--SSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWD  588 (918)
Q Consensus       513 sEGE~vLLAHdDgsCSyyDiAN~Ee--KavYkpPs~v--s~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWD  588 (918)
                      ..|.-++.+-.||++..||+.....  +....|-..+  ...+..-||.-       +.+.|+++++..+    -..=||
T Consensus       493 ~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-------~~~~~las~~~Dg----~v~lWd  561 (793)
T PLN00181        493 RDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNS-------YIKSQVASSNFEG----VVQVWD  561 (793)
T ss_pred             CCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEecc-------CCCCEEEEEeCCC----eEEEEE
Confidence            4567777888899999999754211  1111111111  23345566631       2357887776543    455677


Q ss_pred             ccccceeeEEeecCCccccceeeccCCCCccccccccccccccccccceeccccceeeecccccceeEEEEccCCceEEE
Q 002470          589 FYTKDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQ  668 (918)
Q Consensus       589 fYsk~v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMk  668 (918)
                      ..+.+..                ..+...   .. ..-++.       |..+.|.+|+ +++..+.|++||++.|..++.
T Consensus       562 ~~~~~~~----------------~~~~~H---~~-~V~~l~-------~~p~~~~~L~-Sgs~Dg~v~iWd~~~~~~~~~  613 (793)
T PLN00181        562 VARSQLV----------------TEMKEH---EK-RVWSID-------YSSADPTLLA-SGSDDGSVKLWSINQGVSIGT  613 (793)
T ss_pred             CCCCeEE----------------EEecCC---CC-CEEEEE-------EcCCCCCEEE-EEcCCCEEEEEECCCCcEEEE
Confidence            6543321                111111   00 011111       2222455555 456788999999999999999


Q ss_pred             EeeccceeeeccCCccceeccccEEEeecc--eeeeeecCCCCcceeeeeecCCceeEEEEeecccccccCccceeeccc
Q 002470          669 WEVQKPVLTMDYSSPLQWRNRGKLVVAEAE--TISLWDVNSLNPQTLLSVSSCGRKISALHVNNTDAELGGGVRQRVSSA  746 (918)
Q Consensus       669 WevqkpV~~M~YSSPlQWRnrgKvViAe~e--~islWDVnSL~pq~llsV~~~Gkki~aLHV~NtDAE~gGGVRQRvSSs  746 (918)
                      +....+|..+.|++|     .|++++++..  +|.+||+..-. .++.++.--.+.|+++...+.      .  .-++. 
T Consensus       614 ~~~~~~v~~v~~~~~-----~g~~latgs~dg~I~iwD~~~~~-~~~~~~~~h~~~V~~v~f~~~------~--~lvs~-  678 (793)
T PLN00181        614 IKTKANICCVQFPSE-----SGRSLAFGSADHKVYYYDLRNPK-LPLCTMIGHSKTVSYVRFVDS------S--TLVSS-  678 (793)
T ss_pred             EecCCCeEEEEEeCC-----CCCEEEEEeCCCeEEEEECCCCC-ccceEecCCCCCEEEEEEeCC------C--EEEEE-
Confidence            998888888877654     4776666553  79999997532 234444444566777776421      0  11221 


Q ss_pred             cccCCCceeecCCceeeeeecCCc-cccc----ccccCCCcccee-ee-cCCeEEEeeeeeccccccCCcccceeceecc
Q 002470          747 EAEGNDGVFCTPDSINILDFRHPA-GIGL----KIPKFGVNAQSV-FS-RGDSIFLGCCNVRSTGKKQPSSQVQQFSLRK  819 (918)
Q Consensus       747 e~EgnDGvfcT~dsiNvlDFR~Ps-GIGl----Kip~~g~~~qSv-fs-rGDsVf~G~t~~~~~~k~q~~s~vqq~SlRk  819 (918)
                               +++..|.|.|++.+. ++..    .+..|...+.++ |+ .|.-+..|+....          |--|....
T Consensus       679 ---------s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~----------v~iw~~~~  739 (793)
T PLN00181        679 ---------STDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE----------VFVYHKAF  739 (793)
T ss_pred             ---------ECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE----------EEEEECCC
Confidence                     234579999998652 3321    233344333333 44 3444444544332          22233333


Q ss_pred             ceeeeeeec------CCCCcccccccceee-e-cCCceeeeeeccc-eeeee
Q 002470          820 QRLMNTYSL------PESNAHSYHSAITQV-W-GNSNLVMGISGEG-LFVFD  862 (918)
Q Consensus       820 ~~Lv~tYsl------PesNah~h~saItQV-W-GnSn~Vm~~cG~G-LFvFd  862 (918)
                      +..+.+|.+      +.-..+.|-..|.+| | ++++.++++|..| +-++|
T Consensus       740 ~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~  791 (793)
T PLN00181        740 PMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE  791 (793)
T ss_pred             CCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence            333333321      111223444567777 7 5566777777777 33443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.14  E-value=0.00038  Score=60.34  Aligned_cols=182  Identities=17%  Similarity=0.348  Sum_probs=110.7

Q ss_pred             cccceeeecccccceeEEEEccCCceEEEEeecc-ceeeeccCCccceeccccEEEeec--ceeeeeecCCCCcceeeee
Q 002470          640 PCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQK-PVLTMDYSSPLQWRNRGKLVVAEA--ETISLWDVNSLNPQTLLSV  716 (918)
Q Consensus       640 PCGPLl~StaS~q~~V~~yDIRDGe~vMkWevqk-pV~~M~YSSPlQWRnrgKvViAe~--e~islWDVnSL~pq~llsV  716 (918)
                      |.|.+|+++ +..+.|.+||+++++.+..+.... +|..+.++..      ++++++..  -.|.+||+++..  .+..+
T Consensus        61 ~~~~~l~~~-~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~--~~~~~  131 (289)
T cd00200          61 ADGTYLASG-SSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD------GRILSSSSRDKTIKVWDVETGK--CLTTL  131 (289)
T ss_pred             CCCCEEEEE-cCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCC------CCEEEEecCCCeEEEEECCCcE--EEEEe
Confidence            455666654 447899999999999998888665 7888877653      67777664  679999998543  34444


Q ss_pred             ecCCceeEEEEeecccccccCccceeeccccccCCCceeecCCceeeeeecCCcccccccccCCCcccee-e-ecCCeEE
Q 002470          717 SSCGRKISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCTPDSINILDFRHPAGIGLKIPKFGVNAQSV-F-SRGDSIF  794 (918)
Q Consensus       717 ~~~Gkki~aLHV~NtDAE~gGGVRQRvSSse~EgnDGvfcT~dsiNvlDFR~PsGIGlKip~~g~~~qSv-f-srGDsVf  794 (918)
                      ......|+++.+...        .+.+....         .+..|.++|.+...-+. .+..+...+.++ | ..|..++
T Consensus       132 ~~~~~~i~~~~~~~~--------~~~l~~~~---------~~~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~  193 (289)
T cd00200         132 RGHTDWVNSVAFSPD--------GTFVASSS---------QDGTIKLWDLRTGKCVA-TLTGHTGEVNSVAFSPDGEKLL  193 (289)
T ss_pred             ccCCCcEEEEEEcCc--------CCEEEEEc---------CCCcEEEEEccccccce-eEecCccccceEEECCCcCEEE
Confidence            434455777776553        12222111         14468888887543332 233444344433 3 3444677


Q ss_pred             EeeeeeccccccCCcccceeceeccceeeeeeecCCCCcccccccceee-ecCCceeeeee--ccceeeeeccc
Q 002470          795 LGCCNVRSTGKKQPSSQVQQFSLRKQRLMNTYSLPESNAHSYHSAITQV-WGNSNLVMGIS--GEGLFVFDALS  865 (918)
Q Consensus       795 ~G~t~~~~~~k~q~~s~vqq~SlRk~~Lv~tYslPesNah~h~saItQV-WGnSn~Vm~~c--G~GLFvFda~~  865 (918)
                      +|+.          ...|.-|.++.++++.++.       .|...|+.+ |-..+.++.++  ..-+.+||...
T Consensus       194 ~~~~----------~~~i~i~d~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~  250 (289)
T cd00200         194 SSSS----------DGTIKLWDLSTGKCLGTLR-------GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT  250 (289)
T ss_pred             EecC----------CCcEEEEECCCCceecchh-------hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence            7765          2468889999988888774       122244443 44434444444  34467777654

>PTZ00421 coronin; Provisional

Probab=97.40  E-value=0.007  Score=66.59  Aligned_cols=206  Identities=18%  Similarity=0.286  Sum_probs=112.5

Q ss_pred             ccccc-eeeecccccceeEEEEccCCceEEEEee-ccceeeeccCCccceeccccEEEeecc--eeeeeecCCCCcceee
Q 002470          639 KPCGP-LIASAASSQRVVTVYDIRDGEQIMQWEV-QKPVLTMDYSSPLQWRNRGKLVVAEAE--TISLWDVNSLNPQTLL  714 (918)
Q Consensus       639 rPCGP-Ll~StaS~q~~V~~yDIRDGe~vMkWev-qkpV~~M~YSSPlQWRnrgKvViAe~e--~islWDVnSL~pq~ll  714 (918)
                      -|.+. +|+ +++.-+.|++||++.|+.+...+. +.+|..++|+      ..|.++++...  +|.|||+.+-.  .+.
T Consensus       134 ~P~~~~iLa-Sgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~s------pdG~lLatgs~Dg~IrIwD~rsg~--~v~  204 (493)
T PTZ00421        134 HPSAMNVLA-SAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWN------LDGSLLCTTSKDKKLNIIDPRDGT--IVS  204 (493)
T ss_pred             CcCCCCEEE-EEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEE------CCCCEEEEecCCCEEEEEECCCCc--EEE
Confidence            46664 555 456788999999999999888763 5677777654      35777766553  79999998643  333


Q ss_pred             eeecCCceeEEEEeecccccccCccceeeccccccCCCceeec------CCceeeeeecCCcccccccccCC---Cccce
Q 002470          715 SVSSCGRKISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCT------PDSINILDFRHPAGIGLKIPKFG---VNAQS  785 (918)
Q Consensus       715 sV~~~Gkki~aLHV~NtDAE~gGGVRQRvSSse~EgnDGvfcT------~dsiNvlDFR~PsGIGlKip~~g---~~~qS  785 (918)
                      ++..        |        .|+.-+|+.-..  .++-+|++      +..|.+.|.|...-.- .+-.++   .....
T Consensus       205 tl~~--------H--------~~~~~~~~~w~~--~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~-~~~~~d~~~~~~~~  265 (493)
T PTZ00421        205 SVEA--------H--------ASAKSQRCLWAK--RKDLIITLGCSKSQQRQIMLWDTRKMASPY-STVDLDQSSALFIP  265 (493)
T ss_pred             EEec--------C--------CCCcceEEEEcC--CCCeEEEEecCCCCCCeEEEEeCCCCCCce-eEeccCCCCceEEE
Confidence            3321        1        111222222111  12233332      3469999999754211 111111   11112


Q ss_pred             eee-cCCeEEEeeeeeccccccCCcccceeceeccceeeeeeecCCCCcccccccceeeecCCceeeeeeccceeeeecc
Q 002470          786 VFS-RGDSIFLGCCNVRSTGKKQPSSQVQQFSLRKQRLMNTYSLPESNAHSYHSAITQVWGNSNLVMGISGEGLFVFDAL  864 (918)
Q Consensus       786 vfs-rGDsVf~G~t~~~~~~k~q~~s~vqq~SlRk~~Lv~tYslPesNah~h~saItQVWGnSn~Vm~~cG~GLFvFda~  864 (918)
                      .|+ .|..+|+|...         ...|.-|.++.++++.+++......|                -|+|=+==+..|..
T Consensus       266 ~~d~d~~~L~lggkg---------Dg~Iriwdl~~~~~~~~~~~~s~~~~----------------~g~~~~pk~~~dv~  320 (493)
T PTZ00421        266 FFDEDTNLLYIGSKG---------EGNIRCFELMNERLTFCSSYSSVEPH----------------KGLCMMPKWSLDTR  320 (493)
T ss_pred             EEcCCCCEEEEEEeC---------CCeEEEEEeeCCceEEEeeccCCCCC----------------cceEeccccccccc
Confidence            343 46667776421         24688899999998887654332222                23332223344444


Q ss_pred             cccCCccccccccccccc-----ee---ecCCCCCCCCCcc
Q 002470          865 SNDGFQSFASDNSSIQKV-----RE---IIGPDDLFAPSFD  897 (918)
Q Consensus       865 ~~d~~q~~~~D~~~~~~v-----Re---viGpDDLy~PsFD  897 (918)
                      +-+-.+-|......++-|     |.   -+=.||||-||+-
T Consensus       321 ~~Ei~r~~~l~~~~i~pis~~vpRk~~~~~fq~DlyP~t~~  361 (493)
T PTZ00421        321 KCEIARFYALTYHSLYTIQMLLPRKQADSELQVDVYPPTFA  361 (493)
T ss_pred             ceeeeEEEEecCCeEEEEEEEeccCCCccccccccCCCCCC
Confidence            444444444433333222     11   2446899999875

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.37  E-value=0.018  Score=64.97  Aligned_cols=266  Identities=17%  Similarity=0.294  Sum_probs=143.9

Q ss_pred             cCCCcceeeccCccccceecCCCccCC--CCccceEEEecCCCCCCCccEEEEeccCCCCcccccccccccc--ceeeEE
Q 002470          523 DDGSCSYYDITNCEDKAVYKPPTAVSS--SIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTK--DVRAFH  598 (918)
Q Consensus       523 dDgsCSyyDiAN~EeKavYkpPs~vs~--n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWDfYsk--~v~Afh  598 (918)
                      -+|-|.++++-+.+.++..+--....+  -++.-+|-        ..|+|+++|+..++    ..=||+-+.  +.+..|
T Consensus       456 ~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs--------~dg~~latgg~D~~----I~iwd~~~~~~~~~~~~  523 (793)
T PLN00181        456 LEGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFD--------RDGEFFATAGVNKK----IKIFECESIIKDGRDIH  523 (793)
T ss_pred             hhhhhhhhcccceEEEEeeccccccCCCCcEEEEEEC--------CCCCEEEEEeCCCE----EEEEECCcccccccccc
Confidence            468899999998888777663332322  23333332        24689888776444    467875331  111111


Q ss_pred             eecCCccccceeeccCCCCccccccccccccccccccceeccccceeeecccccceeEEEEccCCceEEEEee-ccceee
Q 002470          599 IEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEV-QKPVLT  677 (918)
Q Consensus       599 ~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWev-qkpV~~  677 (918)
                      ..          +..+...    . ....+       =|..+.+.+|| +++..+.|++||+..|..+..++- ..+|.+
T Consensus       524 ~~----------~~~~~~~----~-~v~~l-------~~~~~~~~~la-s~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~  580 (793)
T PLN00181        524 YP----------VVELASR----S-KLSGI-------CWNSYIKSQVA-SSNFEGVVQVWDVARSQLVTEMKEHEKRVWS  580 (793)
T ss_pred             cc----------eEEeccc----C-ceeeE-------EeccCCCCEEE-EEeCCCeEEEEECCCCeEEEEecCCCCCEEE
Confidence            10          0001110    0 01111       24444566665 556789999999999999988854 578999


Q ss_pred             eccCCccceeccccEEEeec-c-eeeeeecCCCCcceeeeeecCCceeEEEEeecccccccCccceeeccccccCCCcee
Q 002470          678 MDYSSPLQWRNRGKLVVAEA-E-TISLWDVNSLNPQTLLSVSSCGRKISALHVNNTDAELGGGVRQRVSSAEAEGNDGVF  755 (918)
Q Consensus       678 M~YSSPlQWRnrgKvViAe~-e-~islWDVnSL~pq~llsV~~~Gkki~aLHV~NtDAE~gGGVRQRvSSse~EgnDGvf  755 (918)
                      ++|+.+     .|.+++++. + +|.+||+++-  +.+.++.. ...|.++.....|                 |+-=+.
T Consensus       581 l~~~p~-----~~~~L~Sgs~Dg~v~iWd~~~~--~~~~~~~~-~~~v~~v~~~~~~-----------------g~~lat  635 (793)
T PLN00181        581 IDYSSA-----DPTLLASGSDDGSVKLWSINQG--VSIGTIKT-KANICCVQFPSES-----------------GRSLAF  635 (793)
T ss_pred             EEEcCC-----CCCEEEEEcCCCEEEEEECCCC--cEEEEEec-CCCeEEEEEeCCC-----------------CCEEEE
Confidence            998753     355555443 3 7999999864  34444432 2345554442211                 110112


Q ss_pred             ec-CCceeeeeecCCcccccccccCCCcccee-eecCCeEEEeeeeeccccccCCcccceeceeccc------eeeeeee
Q 002470          756 CT-PDSINILDFRHPAGIGLKIPKFGVNAQSV-FSRGDSIFLGCCNVRSTGKKQPSSQVQQFSLRKQ------RLMNTYS  827 (918)
Q Consensus       756 cT-~dsiNvlDFR~PsGIGlKip~~g~~~qSv-fsrGDsVf~G~t~~~~~~k~q~~s~vqq~SlRk~------~Lv~tYs  827 (918)
                      ++ +..|.+.|-|.+.-.-..+..|...+.+| |.+|..++.|+..          ..|.-|.+|++      +++.++.
T Consensus       636 gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D----------~~ikiWd~~~~~~~~~~~~l~~~~  705 (793)
T PLN00181        636 GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTD----------NTLKLWDLSMSISGINETPLHSFM  705 (793)
T ss_pred             EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECC----------CEEEEEeCCCCccccCCcceEEEc
Confidence            22 23689999987643223445566556555 7777776666543          34556777643      3333332


Q ss_pred             cCCCCcccccccceee-ecCCceeeeeec--cceeeeeccc
Q 002470          828 LPESNAHSYHSAITQV-WGNSNLVMGISG--EGLFVFDALS  865 (918)
Q Consensus       828 lPesNah~h~saItQV-WGnSn~Vm~~cG--~GLFvFda~~  865 (918)
                           .|  ...|+.+ |-..+-++++++  .-++++|...
T Consensus       706 -----gh--~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~  739 (793)
T PLN00181        706 -----GH--TNVKNFVGLSVSDGYIATGSETNEVFVYHKAF  739 (793)
T ss_pred             -----CC--CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence                 22  2233333 332333444443  4577888643

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=96.94  E-value=0.33  Score=45.02  Aligned_cols=64  Identities=23%  Similarity=0.316  Sum_probs=43.7

Q ss_pred             cccceeeecccccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEeecc---eeeeeecCCCC
Q 002470          640 PCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAE---TISLWDVNSLN  709 (918)
Q Consensus       640 PCGPLl~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~e---~islWDVnSL~  709 (918)
                      |-|-.|+.+++..+.|.+||++.+..+..-+....+.+      +.|-..|+++++..+   .+.+||.++..
T Consensus        82 ~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~------~~~~~dg~~l~~~~~~~~~~~~~d~~~~~  148 (300)
T TIGR03866        82 PNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEG------MAVSPDGKIVVNTSETTNMAHFIDTKTYE  148 (300)
T ss_pred             CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcce------EEECCCCCEEEEEecCCCeEEEEeCCCCe
Confidence            56766666666667999999999988776655444444      455567777766554   46778987654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PTZ00420 coronin; Provisional

Probab=96.46  E-value=0.2  Score=56.89  Aligned_cols=174  Identities=15%  Similarity=0.335  Sum_probs=89.6

Q ss_pred             ccceeEEEEccCCceEEEEee-ccceeeeccCCccceeccccEEEeec--ceeeeeecCCCCc------ceeeeeecCCc
Q 002470          651 SQRVVTVYDIRDGEQIMQWEV-QKPVLTMDYSSPLQWRNRGKLVVAEA--ETISLWDVNSLNP------QTLLSVSSCGR  721 (918)
Q Consensus       651 ~q~~V~~yDIRDGe~vMkWev-qkpV~~M~YSSPlQWRnrgKvViAe~--e~islWDVnSL~p------q~llsV~~~Gk  721 (918)
                      ...+|++|++-....++...- +.+|..++|+ |-    .+.+++++.  -+|.|||+.+-..      .++..+.-...
T Consensus        52 ~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafs-P~----~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~  126 (568)
T PTZ00420         52 LIGAIRLENQMRKPPVIKLKGHTSSILDLQFN-PC----FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK  126 (568)
T ss_pred             ceeEEEeeecCCCceEEEEcCCCCCEEEEEEc-CC----CCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence            344555555433333433332 3577777774 31    244555444  3899999975321      12222222223


Q ss_pred             eeEEEEeecccccccCccceeeccccccCCCceeec---CCceeeeeecCCcccccccccCCCcccee-ee-cCCeEEEe
Q 002470          722 KISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCT---PDSINILDFRHPAGIGLKIPKFGVNAQSV-FS-RGDSIFLG  796 (918)
Q Consensus       722 ki~aLHV~NtDAE~gGGVRQRvSSse~EgnDGvfcT---~dsiNvlDFR~PsGIGlKip~~g~~~qSv-fs-rGDsVf~G  796 (918)
                      +|.++..+.+                   ...+++|   +-.|.|.|.+...-+ ..+. ++..+.++ |+ .|..+..|
T Consensus       127 ~V~sVaf~P~-------------------g~~iLaSgS~DgtIrIWDl~tg~~~-~~i~-~~~~V~SlswspdG~lLat~  185 (568)
T PTZ00420        127 KISIIDWNPM-------------------NYYIMCSSGFDSFVNIWDIENEKRA-FQIN-MPKKLSSLKWNIKGNLLSGT  185 (568)
T ss_pred             cEEEEEECCC-------------------CCeEEEEEeCCCeEEEEECCCCcEE-EEEe-cCCcEEEEEECCCCCEEEEE
Confidence            3443333221                   1124322   457899998865422 1222 23344444 44 34443333


Q ss_pred             eeeeccccccCCcccceeceeccceeeeeeecCCCCcccccccceeee-----cCCceeeeeeccc-----eeeeeccc
Q 002470          797 CCNVRSTGKKQPSSQVQQFSLRKQRLMNTYSLPESNAHSYHSAITQVW-----GNSNLVMGISGEG-----LFVFDALS  865 (918)
Q Consensus       797 ~t~~~~~~k~q~~s~vqq~SlRk~~Lv~tYslPesNah~h~saItQVW-----GnSn~Vm~~cG~G-----LFvFda~~  865 (918)
                      |.          ...|.-|.+|.++++.++.     +|...-....+|     |+.+.++.++.-+     +.++|...
T Consensus       186 s~----------D~~IrIwD~Rsg~~i~tl~-----gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~  249 (568)
T PTZ00420        186 CV----------GKHMHIIDPRKQEIASSFH-----IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN  249 (568)
T ss_pred             ec----------CCEEEEEECCCCcEEEEEe-----cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence            31          1457889999999988763     343333345577     5666666554332     88888764

>PTZ00420 coronin; Provisional

Probab=96.03  E-value=0.029  Score=63.43  Aligned_cols=65  Identities=15%  Similarity=0.352  Sum_probs=52.5

Q ss_pred             ccccceeeecccccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEeec--ceeeeeecCCCC
Q 002470          639 KPCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEA--ETISLWDVNSLN  709 (918)
Q Consensus       639 rPCGPLl~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~--e~islWDVnSL~  709 (918)
                      -|+|..|+.+++.-++|++||++.|+.+..++...+|..+.|      -..|+++++..  ..|.|||..+..
T Consensus       134 ~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~Slsw------spdG~lLat~s~D~~IrIwD~Rsg~  200 (568)
T PTZ00420        134 NPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKW------NIKGNLLSGTCVGKHMHIIDPRKQE  200 (568)
T ss_pred             CCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEE------CCCCCEEEEEecCCEEEEEECCCCc
Confidence            588998888888899999999999999988877777776655      45688887653  479999998743

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=95.77  E-value=1.7  Score=40.45  Aligned_cols=63  Identities=22%  Similarity=0.292  Sum_probs=42.1

Q ss_pred             cccceeeecccccceeEEEEccCCceEEEEeeccceeeeccCCccceecccc-EEEee--cceeeeeecCCC
Q 002470          640 PCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGK-LVVAE--AETISLWDVNSL  708 (918)
Q Consensus       640 PCGPLl~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgK-vViAe--~e~islWDVnSL  708 (918)
                      |-|-.|+.+++....|.+||.+.|+.+..+.....+..      +.|-..|+ ++++.  ...|.+||+.+.
T Consensus        40 ~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~------~~~~~~g~~l~~~~~~~~~l~~~d~~~~  105 (300)
T TIGR03866        40 KDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPEL------FALHPNGKILYIANEDDNLVTVIDIETR  105 (300)
T ss_pred             CCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccE------EEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence            55666666666778999999999998766543322233      34545565 55553  358999999763

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=95.41  E-value=0.025  Score=60.29  Aligned_cols=60  Identities=25%  Similarity=0.490  Sum_probs=53.4

Q ss_pred             eeecccccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEeecceeeeeecCCCCc
Q 002470          645 IASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAETISLWDVNSLNP  710 (918)
Q Consensus       645 l~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~e~islWDVnSL~p  710 (918)
                      |+|+ +-.++|.+||+|.|-.|-.-++..||-.|+||.-=     --|+||-.-+|.|||.+|+.+
T Consensus       158 iLSS-add~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG-----~ilTia~gssV~Fwdaksf~~  217 (334)
T KOG0278|consen  158 ILSS-ADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDG-----RILTIAYGSSVKFWDAKSFGL  217 (334)
T ss_pred             EEee-ccCCceEEEEeccCcEEEEEecCCCCcceeeccCC-----CEEEEecCceeEEeccccccc
Confidence            6776 88999999999999999999999999999999742     247899999999999999864

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=95.35  E-value=0.77  Score=42.66  Aligned_cols=174  Identities=20%  Similarity=0.322  Sum_probs=96.2

Q ss_pred             ceeEEEEccCCceEEEEeeccceeeeccCCcc--ceeccccEEEe-ecceeeeeecCCCCcceeeeeecCCceeEEEEee
Q 002470          653 RVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPL--QWRNRGKLVVA-EAETISLWDVNSLNPQTLLSVSSCGRKISALHVN  729 (918)
Q Consensus       653 ~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPl--QWRnrgKvViA-e~e~islWDVnSL~pq~llsV~~~Gkki~aLHV~  729 (918)
                      ..|.+||.++|+.+.+=.+..     ....|+  .....|.|+++ +...|..||..+-+  .+.+..+.+         
T Consensus         3 g~l~~~d~~tG~~~W~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~--~~W~~~~~~---------   66 (238)
T PF13360_consen    3 GTLSALDPRTGKELWSYDLGP-----GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGK--VLWRFDLPG---------   66 (238)
T ss_dssp             SEEEEEETTTTEEEEEEECSS-----SCSSEEETEEEETTEEEEEETTSEEEEEETTTSE--EEEEEECSS---------
T ss_pred             CEEEEEECCCCCEEEEEECCC-----CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCC--EEEEeeccc---------
Confidence            468999999999986655533     255555  55678888888 55566666655432  222222211         


Q ss_pred             cccccccCccceeeccccccCCCceee-cC-CceeeeeecCCccccccc------ccCC-CccceeeecCCeEEEeeeee
Q 002470          730 NTDAELGGGVRQRVSSAEAEGNDGVFC-TP-DSINILDFRHPAGIGLKI------PKFG-VNAQSVFSRGDSIFLGCCNV  800 (918)
Q Consensus       730 NtDAE~gGGVRQRvSSse~EgnDGvfc-T~-dsiNvlDFR~PsGIGlKi------p~~g-~~~qSvfsrGDsVf~G~t~~  800 (918)
                          ++.+        ...-..+.||+ +. ..|..||  ..+|-=+.-      |..+ ....+....||.+|+++.  
T Consensus        67 ----~~~~--------~~~~~~~~v~v~~~~~~l~~~d--~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  130 (238)
T PF13360_consen   67 ----PISG--------APVVDGGRVYVGTSDGSLYALD--AKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS--  130 (238)
T ss_dssp             ----CGGS--------GEEEETTEEEEEETTSEEEEEE--TTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET--
T ss_pred             ----cccc--------eeeecccccccccceeeeEecc--cCCcceeeeeccccccccccccccCceEecCEEEEEec--
Confidence                1111        12223344443 33 3577887  333321111      1122 112223334999999987  


Q ss_pred             ccccccCCcccceeceeccceeeeeeecCCCC--ccc---ccccceeeecCCceeeeeeccc-eeeeeccccc
Q 002470          801 RSTGKKQPSSQVQQFSLRKQRLMNTYSLPESN--AHS---YHSAITQVWGNSNLVMGISGEG-LFVFDALSND  867 (918)
Q Consensus       801 ~~~~k~q~~s~vqq~SlRk~~Lv~tYslPesN--ah~---h~saItQVWGnSn~Vm~~cG~G-LFvFda~~~d  867 (918)
                              ...|..+.++.|+++-.|.++...  .+.   +....+-+..+ +.|....+-| ++.+|.....
T Consensus       131 --------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~g~~~~~d~~tg~  194 (238)
T PF13360_consen  131 --------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISD-GRVYVSSGDGRVVAVDLATGE  194 (238)
T ss_dssp             --------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCT-TEEEEECCTSSEEEEETTTTE
T ss_pred             --------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEEC-CEEEEEcCCCeEEEEECCCCC
Confidence                    456788999999999999886644  222   22233334433 3777777777 5777655443

...

>PTZ00421 coronin; Provisional

Probab=95.29  E-value=0.29  Score=54.31  Aligned_cols=150  Identities=9%  Similarity=0.131  Sum_probs=88.0

Q ss_pred             ecCceEEeeecCCCcceeeccCccccceecCCCccCCCCc-cceEEEecCCCCCCCccEEEEeccCCCCccccccccccc
Q 002470          513 SEGESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIW-RDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYT  591 (918)
Q Consensus       513 sEGE~vLLAHdDgsCSyyDiAN~EeKavYkpPs~vs~n~W-~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWDfYs  591 (918)
                      ..|.-++.+..|+++..||+.+.+.-..+....+.   .. +.+|.   |     .+.++++++.....|....-||.-+
T Consensus       178 pdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~---~~~~~~w~---~-----~~~~ivt~G~s~s~Dr~VklWDlr~  246 (493)
T PTZ00421        178 LDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA---KSQRCLWA---K-----RKDLIITLGCSKSQQRQIMLWDTRK  246 (493)
T ss_pred             CCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC---cceEEEEc---C-----CCCeEEEEecCCCCCCeEEEEeCCC
Confidence            35777778899999999999876544444333211   11 33453   1     2345555544444566677788522


Q ss_pred             cceeeEEeecCCccccceeeccCCCCccccccccccccccccccceeccccceeeecccccceeEEEEccCCceEEEEee
Q 002470          592 KDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEV  671 (918)
Q Consensus       592 k~v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWev  671 (918)
                      -. ..++....            ..        .+.+..     =+|-|.|-+|++++.+.+.|++||+++|+.+..++.
T Consensus       247 ~~-~p~~~~~~------------d~--------~~~~~~-----~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~  300 (493)
T PTZ00421        247 MA-SPYSTVDL------------DQ--------SSALFI-----PFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY  300 (493)
T ss_pred             CC-CceeEecc------------CC--------CCceEE-----EEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec
Confidence            11 11111110            00        011111     167899999998888899999999999998887665


Q ss_pred             c--cceeeeccCCccceeccccEEEeecceeeeeec
Q 002470          672 Q--KPVLTMDYSSPLQWRNRGKLVVAEAETISLWDV  705 (918)
Q Consensus       672 q--kpV~~M~YSSPlQWRnrgKvViAe~e~islWDV  705 (918)
                      .  .|+-+|.+..      +-.+-|-+-|-..++-+
T Consensus       301 ~s~~~~~g~~~~p------k~~~dv~~~Ei~r~~~l  330 (493)
T PTZ00421        301 SSVEPHKGLCMMP------KWSLDTRKCEIARFYAL  330 (493)
T ss_pred             cCCCCCcceEecc------cccccccceeeeEEEEe
Confidence            3  4555555443      33355666666666654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.07  E-value=0.14  Score=55.11  Aligned_cols=191  Identities=21%  Similarity=0.278  Sum_probs=109.5

Q ss_pred             ccccccccccccccc-ceeee-ecccchhhhhhhhcccccccccceeeecCceEEeeecCCCcceeeccCccccceecCC
Q 002470          467 TSDERLDEFDDQENR-QAFVI-DEGIEDTCTYQLNEIGQRTSTGGWFVSEGESVLLAHDDGSCSYYDITNCEDKAVYKPP  544 (918)
Q Consensus       467 ~adE~leeFDdQEN~-~~~~i-~EEtee~c~~ql~~iG~K~stgGWFVsEGE~vLLAHdDgsCSyyDiAN~EeKavYkpP  544 (918)
                      .-|-++.-||-.++. ..+++ +-+..-              +.==|.-.|+-|+-+=+|++|.+||+-+.+-+..++.=
T Consensus       222 s~D~tiriwd~~~~~~~~~~l~gH~~~v--------------~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~h  287 (456)
T KOG0266|consen  222 SDDKTLRIWDLKDDGRNLKTLKGHSTYV--------------TSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGH  287 (456)
T ss_pred             cCCceEEEeeccCCCeEEEEecCCCCce--------------EEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeecc
Confidence            456677888884443 33333 222221              12226667788888889999999999997777766654


Q ss_pred             CccCCCCccceEEEecCCCCCCCccEEEEeccCCCCccccccccccccceeeEEeecCCccccceeeccCCCCccccccc
Q 002470          545 TAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTKDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNA  624 (918)
Q Consensus       545 s~vs~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWDfYsk~v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~  624 (918)
                      +.--.    .|+.       ...|+|+++||.    |--.|=||.++...+  ++..-            ...    -|.
T Consensus       288 s~~is----~~~f-------~~d~~~l~s~s~----d~~i~vwd~~~~~~~--~~~~~------------~~~----~~~  334 (456)
T KOG0266|consen  288 SDGIS----GLAF-------SPDGNLLVSASY----DGTIRVWDLETGSKL--CLKLL------------SGA----ENS  334 (456)
T ss_pred             CCceE----EEEE-------CCCCCEEEEcCC----CccEEEEECCCCcee--eeecc------------cCC----CCC
Confidence            32111    1111       234789988854    666788999998865  11111            000    000


Q ss_pred             cccccccccccceeccccceeeecccccceeEEEEccCCceEEEEeeccc-eeeeccCCccceeccccEEEeecc--eee
Q 002470          625 FSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKP-VLTMDYSSPLQWRNRGKLVVAEAE--TIS  701 (918)
Q Consensus       625 ~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWevqkp-V~~M~YSSPlQWRnrgKvViAe~e--~is  701 (918)
                      ..-..+...|.      |=. +-+++.-++|++||++.|..++.|....- +..+  -+|.- .--|+..+.+.|  +|.
T Consensus       335 ~~~~~~~fsp~------~~~-ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~i~sg~~d~~v~  404 (456)
T KOG0266|consen  335 APVTSVQFSPN------GKY-LLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCI--FSPTL-STGGKLIYSGSEDGSVY  404 (456)
T ss_pred             CceeEEEECCC------CcE-EEEecCCCeEEEEEccCCcceeeecccCCcceeE--ecccc-cCCCCeEEEEeCCceEE
Confidence            00000111122      222 33456678999999999999999976543 2121  12222 334666666555  688


Q ss_pred             eeecCCCCcceee
Q 002470          702 LWDVNSLNPQTLL  714 (918)
Q Consensus       702 lWDVnSL~pq~ll  714 (918)
                      +||..++..-..+
T Consensus       405 ~~~~~s~~~~~~l  417 (456)
T KOG0266|consen  405 VWDSSSGGILQRL  417 (456)
T ss_pred             EEeCCccchhhhh
Confidence            9999986654433

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=94.90  E-value=0.36  Score=52.57  Aligned_cols=219  Identities=18%  Similarity=0.346  Sum_probs=143.7

Q ss_pred             cccccccceeeEEeecCCccccceeeccCCCCccccccccccccccccccceeccccceeeecccccceeEEEEccCCce
Q 002470          586 SWDFYTKDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQ  665 (918)
Q Consensus       586 SWDfYsk~v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~  665 (918)
                      |||   -.||-+-++..+....+ ++--++.          .++    --=|-+- |-. +-+++.-+.+|+|||.-| |
T Consensus        47 SWD---~tVR~wevq~~g~~~~k-a~~~~~~----------PvL----~v~Wsdd-gsk-Vf~g~~Dk~~k~wDL~S~-Q  105 (347)
T KOG0647|consen   47 SWD---GTVRIWEVQNSGQLVPK-AQQSHDG----------PVL----DVCWSDD-GSK-VFSGGCDKQAKLWDLASG-Q  105 (347)
T ss_pred             ccC---CceEEEEEecCCcccch-hhhccCC----------CeE----EEEEccC-Cce-EEeeccCCceEEEEccCC-C
Confidence            788   58999999986544332 2111111          111    1112222 333 344566788999999999 7


Q ss_pred             EEEEee-ccceeeeccCCccceeccccEEEeec--ceeeeeecCCCCcceeeeeecCCceeEEEEeecccccccCcccee
Q 002470          666 IMQWEV-QKPVLTMDYSSPLQWRNRGKLVVAEA--ETISLWDVNSLNPQTLLSVSSCGRKISALHVNNTDAELGGGVRQR  742 (918)
Q Consensus       666 vMkWev-qkpV~~M~YSSPlQWRnrgKvViAe~--e~islWDVnSL~pq~llsV~~~Gkki~aLHV~NtDAE~gGGVRQR  742 (918)
                      +++-.. ..||-+|.+-.+.-    -.+++++.  -+|.+||..  .++++.++.+++ |+||+-|-+-=|-++      
T Consensus       106 ~~~v~~Hd~pvkt~~wv~~~~----~~cl~TGSWDKTlKfWD~R--~~~pv~t~~LPe-RvYa~Dv~~pm~vVa------  172 (347)
T KOG0647|consen  106 VSQVAAHDAPVKTCHWVPGMN----YQCLVTGSWDKTLKFWDTR--SSNPVATLQLPE-RVYAADVLYPMAVVA------  172 (347)
T ss_pred             eeeeeecccceeEEEEecCCC----cceeEecccccceeecccC--CCCeeeeeeccc-eeeehhccCceeEEE------
Confidence            776554 35777776655543    23555553  689999998  577899999976 578877665444333      


Q ss_pred             eccccccCCCceeecCCceeeeeecCCcccccccccC-C--CccceeeecCCeEEEeeeeeccccccC-Ccccceeceec
Q 002470          743 VSSAEAEGNDGVFCTPDSINILDFRHPAGIGLKIPKF-G--VNAQSVFSRGDSIFLGCCNVRSTGKKQ-PSSQVQQFSLR  818 (918)
Q Consensus       743 vSSse~EgnDGvfcT~dsiNvlDFR~PsGIGlKip~~-g--~~~qSvfsrGDsVf~G~t~~~~~~k~q-~~s~vqq~SlR  818 (918)
                                   |....|=|+..++|.-+=+.|-.. -  ...-++|.++|---||.+++|-.+.-- +..+.+.|++|
T Consensus       173 -------------ta~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFk  239 (347)
T KOG0647|consen  173 -------------TAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFK  239 (347)
T ss_pred             -------------ecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEE
Confidence                         333457778888887776655432 2  333468999999999999999866433 22448889998


Q ss_pred             cce----eee-eeecCCCCcccccccceeeecCCceeeeeeccceeee
Q 002470          819 KQR----LMN-TYSLPESNAHSYHSAITQVWGNSNLVMGISGEGLFVF  861 (918)
Q Consensus       819 k~~----Lv~-tYslPesNah~h~saItQVWGnSn~Vm~~cG~GLFvF  861 (918)
                      =-|    .-. +|+.-+-+-|+.|.-          +.-|-|-|-|.|
T Consensus       240 CHR~~~~~~~~VYaVNsi~FhP~hgt----------lvTaGsDGtf~F  277 (347)
T KOG0647|consen  240 CHRSTNSVNDDVYAVNSIAFHPVHGT----------LVTAGSDGTFSF  277 (347)
T ss_pred             EeccCCCCCCceEEecceEeecccce----------EEEecCCceEEE
Confidence            666    333 799999899998754          445566788877

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=94.39  E-value=1.3  Score=50.25  Aligned_cols=261  Identities=17%  Similarity=0.235  Sum_probs=159.6

Q ss_pred             EEeeecCCCcceeeccCccccceecCCCccCCCCccceEEEecCCCCCCCccEEEEeccCCCCccccccccccccceeeE
Q 002470          518 VLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTKDVRAF  597 (918)
Q Consensus       518 vLLAHdDgsCSyyDiAN~EeKavYkpPs~vs~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWDfYsk~v~Af  597 (918)
                      +...=+|++..-||..|-  +.+..++.+=.-.    ||-+.-|-    -+.+.|.+|---|.    ==||.=+.++  .
T Consensus       221 ~~~~s~~~tl~~~~~~~~--~~i~~~l~GH~g~----V~~l~~~~----~~~~lvsgS~D~t~----rvWd~~sg~C--~  284 (537)
T KOG0274|consen  221 FKSGSDDSTLHLWDLNNG--YLILTRLVGHFGG----VWGLAFPS----GGDKLVSGSTDKTE----RVWDCSTGEC--T  284 (537)
T ss_pred             EEecCCCceeEEeecccc--eEEEeeccCCCCC----ceeEEEec----CCCEEEEEecCCcE----EeEecCCCcE--E
Confidence            334456666667777754  4455556665544    45455553    14566776644443    3477434333  3


Q ss_pred             EeecCCccccceeeccCCCCccccccccccccccccccceeccccceeeecccccceeEEEEccCCceEEEEe-ecccee
Q 002470          598 HIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWE-VQKPVL  676 (918)
Q Consensus       598 h~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWe-vqkpV~  676 (918)
                      |+..+-..                     ++.+..-        +|.+.+++|.-.+|+||||..|--+---. .--||.
T Consensus       285 ~~l~gh~s---------------------tv~~~~~--------~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~  335 (537)
T KOG0274|consen  285 HSLQGHTS---------------------SVRCLTI--------DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVN  335 (537)
T ss_pred             EEecCCCc---------------------eEEEEEc--------cCceEeeccCCceEEEEeccCcceEEEeccccccEE
Confidence            44443111                     1111111        12333448899999999999998877666 888999


Q ss_pred             eeccCCccceeccccEEEeecc--eeeeeecCCCCcceeeeeecCCceeEEEEeecccccccCccceeeccccccCCCce
Q 002470          677 TMDYSSPLQWRNRGKLVVAEAE--TISLWDVNSLNPQTLLSVSSCGRKISALHVNNTDAELGGGVRQRVSSAEAEGNDGV  754 (918)
Q Consensus       677 ~M~YSSPlQWRnrgKvViAe~e--~islWDVnSL~pq~llsV~~~Gkki~aLHV~NtDAE~gGGVRQRvSSse~EgnDGv  754 (918)
                      +|.+.        +.++|++..  +|.+||+.  .-+.|.+...---.|++|=+        ++. +++-|...      
T Consensus       336 ~v~~~--------~~~lvsgs~d~~v~VW~~~--~~~cl~sl~gH~~~V~sl~~--------~~~-~~~~Sgs~------  390 (537)
T KOG0274|consen  336 CVQLD--------EPLLVSGSYDGTVKVWDPR--TGKCLKSLSGHTGRVYSLIV--------DSE-NRLLSGSL------  390 (537)
T ss_pred             EEEec--------CCEEEEEecCceEEEEEhh--hceeeeeecCCcceEEEEEe--------cCc-ceEEeeee------
Confidence            99987        455666543  69999999  66778887777778888832        222 45544333      


Q ss_pred             eecCCceeeeeecCCcccccccccCCCccceeeecCCeEEEeeeeeccccccCCcccceeceeccceeeeeeecCCCCcc
Q 002470          755 FCTPDSINILDFRHPAGIGLKIPKFGVNAQSVFSRGDSIFLGCCNVRSTGKKQPSSQVQQFSLRKQRLMNTYSLPESNAH  834 (918)
Q Consensus       755 fcT~dsiNvlDFR~PsGIGlKip~~g~~~qSvfsrGDsVf~G~t~~~~~~k~q~~s~vqq~SlRk~~Lv~tYslPesNah  834 (918)
                         +..|=+.|++.+..-=+-..-|..-++++--+ |...+.|..-.         .|-+|.+--+..+-++.=|     
T Consensus       391 ---D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~-~~~Lvs~~aD~---------~Ik~WD~~~~~~~~~~~~~-----  452 (537)
T KOG0274|consen  391 ---DTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR-DNFLVSSSADG---------TIKLWDAEEGECLRTLEGR-----  452 (537)
T ss_pred             ---ccceEeecCCchhhhhhhhcCCcccccccccc-cceeEeccccc---------cEEEeecccCceeeeeccC-----
Confidence               36788999988852222233344444443333 33444443322         6778888888998888776     


Q ss_pred             cccccceeeecCCceeeeeeccceeeeeccccc
Q 002470          835 SYHSAITQVWGNSNLVMGISGEGLFVFDALSND  867 (918)
Q Consensus       835 ~h~saItQVWGnSn~Vm~~cG~GLFvFda~~~d  867 (918)
                       |+.+|+=+=+..+.||.++=.|.+-+-.++..
T Consensus       453 -~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~  484 (537)
T KOG0274|consen  453 -HVGGVSALALGKEEILCSSDDGSVKLWDLRSG  484 (537)
T ss_pred             -CcccEEEeecCcceEEEEecCCeeEEEecccC
Confidence             65666655444788999988887766655544

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.12  E-value=1.8  Score=46.87  Aligned_cols=154  Identities=22%  Similarity=0.399  Sum_probs=95.3

Q ss_pred             ceeeecCceEEeeecCCCcceeec-cCccccceecCCCccCCCCccceEEEecCCCCCCCccEEEEeccCCCCccccccc
Q 002470          509 GWFVSEGESVLLAHDDGSCSYYDI-TNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSW  587 (918)
Q Consensus       509 GWFVsEGE~vLLAHdDgsCSyyDi-AN~EeKavYkpPs~vs~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSW  587 (918)
                      -=|-..|+.++=+=+|++...||+ .+.-.=-+.++     +..|--|=-+-      ..|+.||.+|.-+         
T Consensus       209 ~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g-----H~~~v~~~~f~------p~g~~i~Sgs~D~---------  268 (456)
T KOG0266|consen  209 VAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG-----HSTYVTSVAFS------PDGNLLVSGSDDG---------  268 (456)
T ss_pred             eEECCCCcEEEEecCCceEEEeeccCCCeEEEEecC-----CCCceEEEEec------CCCCEEEEecCCC---------
Confidence            346678889999999999999999 33111112222     22222222221      1247777766443         


Q ss_pred             cccccceeeEEeecCCccccceeeccCCCCccccccccccccccccccceeccccceeeecccccceeEEEEccCCc---
Q 002470          588 DFYTKDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGE---  664 (918)
Q Consensus       588 DfYsk~v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe---  664 (918)
                           .||.+.++.+      +.++.|+....    ..+.+        ++.|+|=+|+++ |.-++|++||+.-|.   
T Consensus       269 -----tvriWd~~~~------~~~~~l~~hs~----~is~~--------~f~~d~~~l~s~-s~d~~i~vwd~~~~~~~~  324 (456)
T KOG0266|consen  269 -----TVRIWDVRTG------ECVRKLKGHSD----GISGL--------AFSPDGNLLVSA-SYDGTIRVWDLETGSKLC  324 (456)
T ss_pred             -----cEEEEeccCC------eEEEeeeccCC----ceEEE--------EECCCCCEEEEc-CCCccEEEEECCCCceee
Confidence                 4666766654      33444444411    11111        788999999998 779999999999999   


Q ss_pred             -eEEEEeecc-ceeeeccCCccceeccccEEEeec-c-eeeeeecCCCCcce
Q 002470          665 -QIMQWEVQK-PVLTMDYSSPLQWRNRGKLVVAEA-E-TISLWDVNSLNPQT  712 (918)
Q Consensus       665 -~vMkWevqk-pV~~M~YSSPlQWRnrgKvViAe~-e-~islWDVnSL~pq~  712 (918)
                       ..|.+.... ||....++      ..|+.++... . .+.+||+.+..--.
T Consensus       325 ~~~~~~~~~~~~~~~~~fs------p~~~~ll~~~~d~~~~~w~l~~~~~~~  370 (456)
T KOG0266|consen  325 LKLLSGAENSAPVTSVQFS------PNGKYLLSASLDRTLKLWDLRSGKSVG  370 (456)
T ss_pred             eecccCCCCCCceeEEEEC------CCCcEEEEecCCCeEEEEEccCCccee
Confidence             355555555 57666555      4555555444 4 79999999775433

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=92.74  E-value=5.9  Score=39.70  Aligned_cols=70  Identities=14%  Similarity=0.394  Sum_probs=45.9

Q ss_pred             ceeccccceeeecccccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEeec---ceeeeeecCC
Q 002470          636 WWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEA---ETISLWDVNS  707 (918)
Q Consensus       636 WWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~---e~islWDVnS  707 (918)
                      +.+-|-|..|..+......|.+|||.......+..-.-|+-  .+..-+++...||-+++-.   -+|++|+++.
T Consensus       233 i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        233 IHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             EEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc--ccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence            56778899888887888999999997544444443333332  2333455556786665433   3899998864

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=91.90  E-value=1.6  Score=49.59  Aligned_cols=150  Identities=18%  Similarity=0.298  Sum_probs=100.0

Q ss_pred             ccceeeecccccceeEEEEccCCceEEEEe-eccceeeeccCCccceeccccEEEe--ecceeeeeecCCCCcceeeeee
Q 002470          641 CGPLIASAASSQRVVTVYDIRDGEQIMQWE-VQKPVLTMDYSSPLQWRNRGKLVVA--EAETISLWDVNSLNPQTLLSVS  717 (918)
Q Consensus       641 CGPLl~StaS~q~~V~~yDIRDGe~vMkWe-vqkpV~~M~YSSPlQWRnrgKvViA--e~e~islWDVnSL~pq~llsV~  717 (918)
                      ||++|+| +|.-++++|||+.+|+.+---. -+.-|..|+--        ..+.+.  --++|.+|||+  |++-|+...
T Consensus       260 ~~~~lvs-gS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--------~~~~~sgs~D~tVkVW~v~--n~~~l~l~~  328 (537)
T KOG0274|consen  260 GGDKLVS-GSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--------PFLLVSGSRDNTVKVWDVT--NGACLNLLR  328 (537)
T ss_pred             CCCEEEE-EecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--------CceEeeccCCceEEEEecc--CcceEEEec
Confidence            7888886 5778899999999999876544 67778777643        222333  56889999999  666666555


Q ss_pred             cCCceeEEEEeecccccccCccceeeccccccCCCceeecCC-ceeeeeecCCcccc-cccccCCCccceeeecC-CeEE
Q 002470          718 SCGRKISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCTPD-SINILDFRHPAGIG-LKIPKFGVNAQSVFSRG-DSIF  794 (918)
Q Consensus       718 ~~Gkki~aLHV~NtDAE~gGGVRQRvSSse~EgnDGvfcT~d-siNvlDFR~PsGIG-lKip~~g~~~qSvfsrG-DsVf  794 (918)
                      --+-.|+|+-.+ .|.=+.|                   |.| +|=|-|-+  +|== ..+-.|-.-|++++-.+ .-+|
T Consensus       329 ~h~~~V~~v~~~-~~~lvsg-------------------s~d~~v~VW~~~--~~~cl~sl~gH~~~V~sl~~~~~~~~~  386 (537)
T KOG0274|consen  329 GHTGPVNCVQLD-EPLLVSG-------------------SYDGTVKVWDPR--TGKCLKSLSGHTGRVYSLIVDSENRLL  386 (537)
T ss_pred             cccccEEEEEec-CCEEEEE-------------------ecCceEEEEEhh--hceeeeeecCCcceEEEEEecCcceEE
Confidence            345556666544 3333322                   222 35566665  2221 23344667888888788 8888


Q ss_pred             EeeeeeccccccCCcccceeceeccc-eeeeeeecCCCCc
Q 002470          795 LGCCNVRSTGKKQPSSQVQQFSLRKQ-RLMNTYSLPESNA  833 (918)
Q Consensus       795 ~G~t~~~~~~k~q~~s~vqq~SlRk~-~Lv~tYslPesNa  833 (918)
                      .|.+.          .-++.|+|+.+ +.+-||..+.+-.
T Consensus       387 Sgs~D----------~~IkvWdl~~~~~c~~tl~~h~~~v  416 (537)
T KOG0274|consen  387 SGSLD----------TTIKVWDLRTKRKCIHTLQGHTSLV  416 (537)
T ss_pred             eeeec----------cceEeecCCchhhhhhhhcCCcccc
Confidence            88876          34778899988 8888886655443

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=90.95  E-value=1.5  Score=49.40  Aligned_cols=158  Identities=25%  Similarity=0.368  Sum_probs=99.6

Q ss_pred             eecccccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEee--cceeeeeecCCCCcceeeeeecCCcee
Q 002470          646 ASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAE--AETISLWDVNSLNPQTLLSVSSCGRKI  723 (918)
Q Consensus       646 ~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe--~e~islWDVnSL~pq~llsV~~~Gkki  723 (918)
                      +-++|-++++|.|||+-++-      .|-|+...|+--+---  +-.|+-+  -+.|.|||.-|  +.+..+|+..| +|
T Consensus       276 vVsgs~DRtiK~WDl~k~~C------~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs--~~~~~sv~~gg-~v  344 (459)
T KOG0288|consen  276 VVSGSADRTIKLWDLQKAYC------SKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRS--ADKTRSVPLGG-RV  344 (459)
T ss_pred             eeeccccchhhhhhhhhhhe------eccccccccccceEec--ceeeeecccccceEEEeccC--CceeeEeecCc-ce
Confidence            34578899999999987543      3445544444322110  2223332  35699999876  56789999988 88


Q ss_pred             EEEEeecccccccCccceeeccccccCCCceeecCCceeeeeecCCcccccccccCCC-----ccceeeecCCeE-EEee
Q 002470          724 SALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCTPDSINILDFRHPAGIGLKIPKFGV-----NAQSVFSRGDSI-FLGC  797 (918)
Q Consensus       724 ~aLHV~NtDAE~gGGVRQRvSSse~EgnDGvfcT~dsiNvlDFR~PsGIGlKip~~g~-----~~qSvfsrGDsV-f~G~  797 (918)
                      ..|-++-       +.++=+|+          .-+|-++|+|-|.- +|=.-+--.|.     -.-.|||+|++. --|.
T Consensus       345 tSl~ls~-------~g~~lLss----------sRDdtl~viDlRt~-eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS  406 (459)
T KOG0288|consen  345 TSLDLSM-------DGLELLSS----------SRDDTLKVIDLRTK-EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS  406 (459)
T ss_pred             eeEeecc-------CCeEEeee----------cCCCceeeeecccc-cEEEEeeccccccccccceeEECCCCceeeecc
Confidence            8886642       22333333          23688999998863 22222222222     245688887763 3343


Q ss_pred             eeeccccccCCcccceeceeccceeeeeeecCCCCccccccccee-eecCC
Q 002470          798 CNVRSTGKKQPSSQVQQFSLRKQRLMNTYSLPESNAHSYHSAITQ-VWGNS  847 (918)
Q Consensus       798 t~~~~~~k~q~~s~vqq~SlRk~~Lv~tYslPesNah~h~saItQ-VWGnS  847 (918)
                      .+          ..|--|++-.|||....++|.+|+     +|+- .|-.+
T Consensus       407 ~d----------gsv~iW~v~tgKlE~~l~~s~s~~-----aI~s~~W~~s  442 (459)
T KOG0288|consen  407 AD----------GSVYIWSVFTGKLEKVLSLSTSNA-----AITSLSWNPS  442 (459)
T ss_pred             CC----------CcEEEEEccCceEEEEeccCCCCc-----ceEEEEEcCC
Confidence            33          457789999999999999999988     5543 46543

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=90.33  E-value=1.1  Score=48.79  Aligned_cols=142  Identities=18%  Similarity=0.304  Sum_probs=95.0

Q ss_pred             eecccccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEeec-ceeeeeecCCCCcceeeeeecCCceeE
Q 002470          646 ASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEA-ETISLWDVNSLNPQTLLSVSSCGRKIS  724 (918)
Q Consensus       646 ~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~-e~islWDVnSL~pq~llsV~~~Gkki~  724 (918)
                      +-+..-+..|+.||+--|+.-.-=---+||..|+|+     +-+|+||-++- ++|.|||.--  ++...+... +|||+
T Consensus        68 ~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~-----~~~~~vIsgsWD~~ik~wD~R~--~~~~~~~d~-~kkVy  139 (323)
T KOG1036|consen   68 IVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYS-----YEVGCVISGSWDKTIKFWDPRN--KVVVGTFDQ-GKKVY  139 (323)
T ss_pred             EEEeccCceEEEEEecCCcceeeccCCCceEEEEee-----ccCCeEEEcccCccEEEEeccc--ccccccccc-CceEE
Confidence            446677899999999887755444456899999998     56787766654 6899999874  444444444 66888


Q ss_pred             EEEeecccccccCccceeeccccccCCCcee-ecCCceeeeeecCCc------ccccccccCCCccceeeecCCeEEEee
Q 002470          725 ALHVNNTDAELGGGVRQRVSSAEAEGNDGVF-CTPDSINILDFRHPA------GIGLKIPKFGVNAQSVFSRGDSIFLGC  797 (918)
Q Consensus       725 aLHV~NtDAE~gGGVRQRvSSse~EgnDGvf-cT~dsiNvlDFR~Ps------GIGlKip~~g~~~qSvfsrGDsVf~G~  797 (918)
                      |+-|+                    ||-=|. |.+..|++.|.|.=.      -=++|+++--+   ..|.-|.--+.|+
T Consensus       140 ~~~v~--------------------g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v---~~~pn~eGy~~sS  196 (323)
T KOG1036|consen  140 CMDVS--------------------GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCV---ALVPNGEGYVVSS  196 (323)
T ss_pred             EEecc--------------------CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEE---EEecCCCceEEEe
Confidence            87664                    555567 777889999998621      11344443322   2466777788999


Q ss_pred             eeecccccc---CCcccceeceec
Q 002470          798 CNVRSTGKK---QPSSQVQQFSLR  818 (918)
Q Consensus       798 t~~~~~~k~---q~~s~vqq~SlR  818 (918)
                      +++|-+.--   ++..|=..|..|
T Consensus       197 ieGRVavE~~d~s~~~~skkyaFk  220 (323)
T KOG1036|consen  197 IEGRVAVEYFDDSEEAQSKKYAFK  220 (323)
T ss_pred             ecceEEEEccCCchHHhhhceeEE
Confidence            999875432   233444445444

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=89.84  E-value=6.7  Score=39.84  Aligned_cols=186  Identities=19%  Similarity=0.230  Sum_probs=93.0

Q ss_pred             cceeEEEEccCC-------ceEEEEeeccceeeeccCCccceeccccEEEeecceeeeeecCCCCcceeeeeecCCce--
Q 002470          652 QRVVTVYDIRDG-------EQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAETISLWDVNSLNPQTLLSVSSCGRK--  722 (918)
Q Consensus       652 q~~V~~yDIRDG-------e~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~e~islWDVnSL~pq~llsV~~~Gkk--  722 (918)
                      ++-+.+|+|.+.       +.+-+.++..||.+|..-       +|+||+|--..|.+|++.--+  .|+.++...-.  
T Consensus        61 ~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-------~~~lv~~~g~~l~v~~l~~~~--~l~~~~~~~~~~~  131 (321)
T PF03178_consen   61 SGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-------NGRLVVAVGNKLYVYDLDNSK--TLLKKAFYDSPFY  131 (321)
T ss_dssp             -EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-------TTEEEEEETTEEEEEEEETTS--SEEEEEEE-BSSS
T ss_pred             CcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-------CCEEEEeecCEEEEEEccCcc--cchhhheecceEE
Confidence            478999999996       677789999999999854       788999999999999987655  45555544333  


Q ss_pred             eEEEEeecccccccCccceeeccccccCCCceeec--CCceeeeeecCCcc----cccccccCCCccceeeecCCeEEEe
Q 002470          723 ISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCT--PDSINILDFRHPAG----IGLKIPKFGVNAQSVFSRGDSIFLG  796 (918)
Q Consensus       723 i~aLHV~NtDAE~gGGVRQRvSSse~EgnDGvfcT--~dsiNvlDFR~PsG----IGlKip~~g~~~qSvfsrGDsVf~G  796 (918)
                      +..|.+.                    +| =+++.  -+||.++-|+.-.-    |+.-.......+-....++|.++.+
T Consensus       132 i~sl~~~--------------------~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~  190 (321)
T PF03178_consen  132 ITSLSVF--------------------KN-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG  190 (321)
T ss_dssp             EEEEEEE--------------------TT-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE
T ss_pred             EEEEecc--------------------cc-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE
Confidence            3333333                    22 22222  46777777665111    2222223333333333377855555


Q ss_pred             eeeeccccccCCcccceeceec-cceeeeeeecCCCCcccccccceeeecCC------ceeeeeeccceeeeec-cccc
Q 002470          797 CCNVRSTGKKQPSSQVQQFSLR-KQRLMNTYSLPESNAHSYHSAITQVWGNS------NLVMGISGEGLFVFDA-LSND  867 (918)
Q Consensus       797 ~t~~~~~~k~q~~s~vqq~SlR-k~~Lv~tYslPesNah~h~saItQVWGnS------n~Vm~~cG~GLFvFda-~~~d  867 (918)
                      -..+....-..+....+...-. +=..++.|.|++.-....+.++.+.=+.+      .++.|...=|++++=+ ..++
T Consensus       191 D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p~l~~~  269 (321)
T PF03178_consen  191 DKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLIPFLSEE  269 (321)
T ss_dssp             ETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEEE-E-HH
T ss_pred             cCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEEecCCHH
Confidence            4444432222221111111100 11233556666665555443333321122      2555555555666766 4433

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=89.83  E-value=1.8  Score=48.86  Aligned_cols=220  Identities=22%  Similarity=0.291  Sum_probs=126.5

Q ss_pred             cCceEEeeecCCCcceeeccCccccceecC-CCccCCCCccceEEEecCCCCCCCccEEEEeccCCCCcccccccccccc
Q 002470          514 EGESVLLAHDDGSCSYYDITNCEDKAVYKP-PTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTK  592 (918)
Q Consensus       514 EGE~vLLAHdDgsCSyyDiAN~EeKavYkp-Ps~vs~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWDfYsk  592 (918)
                      ++..+.-|-.||+.-.|+.-|.+.=..... +..|+--.|            =-||+|+++||    .|+-.==||.-|+
T Consensus       230 ~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~Vaf------------HPsG~~L~Tas----fD~tWRlWD~~tk  293 (459)
T KOG0272|consen  230 SDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAF------------HPSGKFLGTAS----FDSTWRLWDLETK  293 (459)
T ss_pred             CccceeeeccCCceeeeccCCCcchhhhhcchhhheeeee------------cCCCceeeecc----cccchhhcccccc
Confidence            567788888999999999999653222211 111221111            13799999987    5776777888777


Q ss_pred             ceeeEEeecCCccccceeeccCCCCccccccccccccccccccceeccccceeeecccccceeEEEEccCCceEEEEe-e
Q 002470          593 DVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWE-V  671 (918)
Q Consensus       593 ~v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWe-v  671 (918)
                      .-  .|.++|-+   +    +           ...+.        |-|=|-|++| ..--..=.|||+|.|.+||--+ -
T Consensus       294 ~E--lL~QEGHs---~----~-----------v~~ia--------f~~DGSL~~t-GGlD~~~RvWDlRtgr~im~L~gH  344 (459)
T KOG0272|consen  294 SE--LLLQEGHS---K----G-----------VFSIA--------FQPDGSLAAT-GGLDSLGRVWDLRTGRCIMFLAGH  344 (459)
T ss_pred             hh--hHhhcccc---c----c-----------cceeE--------ecCCCceeec-cCccchhheeecccCcEEEEeccc
Confidence            53  34555511   1    1           11111        4456776554 5556667899999999999886 4


Q ss_pred             ccceeeeccCCccceeccccEEEeec--ceeeeeecCCCCcceeeeeecCCceeEEEEeecccccccCccceeecccccc
Q 002470          672 QKPVLTMDYSSPLQWRNRGKLVVAEA--ETISLWDVNSLNPQTLLSVSSCGRKISALHVNNTDAELGGGVRQRVSSAEAE  749 (918)
Q Consensus       672 qkpV~~M~YSSPlQWRnrgKvViAe~--e~islWDVnSL~pq~llsV~~~Gkki~aLHV~NtDAE~gGGVRQRvSSse~E  749 (918)
                      .|||++|+||.      .|-.+.++.  -++.+||..=-.+  |.+++        -|.|=+-     .||    -+..+
T Consensus       345 ~k~I~~V~fsP------NGy~lATgs~Dnt~kVWDLR~r~~--ly~ip--------AH~nlVS-----~Vk----~~p~~  399 (459)
T KOG0272|consen  345 IKEILSVAFSP------NGYHLATGSSDNTCKVWDLRMRSE--LYTIP--------AHSNLVS-----QVK----YSPQE  399 (459)
T ss_pred             ccceeeEeECC------CceEEeecCCCCcEEEeeeccccc--ceecc--------cccchhh-----heE----ecccC
Confidence            69999999874      566777654  4799999875443  44443        2443211     111    11122


Q ss_pred             CCCceeecCC-ceeeeeecCCccccc-ccccCCCccceeeecCCeEEEeeeeeccccc
Q 002470          750 GNDGVFCTPD-SINILDFRHPAGIGL-KIPKFGVNAQSVFSRGDSIFLGCCNVRSTGK  805 (918)
Q Consensus       750 gnDGvfcT~d-siNvlDFR~PsGIGl-Kip~~g~~~qSvfsrGDsVf~G~t~~~~~~k  805 (918)
                      |.-=|=|.-| -+||.-  .+++-=+ -+.-|...+-|+=--+|+=||-++.+--++|
T Consensus       400 g~fL~TasyD~t~kiWs--~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~K  455 (459)
T KOG0272|consen  400 GYFLVTASYDNTVKIWS--TRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIK  455 (459)
T ss_pred             CeEEEEcccCcceeeec--CCCcccchhhcCCccceEEEEeccCCceEEEeccCceee
Confidence            2222222222 345432  2222211 2455556666655556776777766655554

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=89.49  E-value=21  Score=38.96  Aligned_cols=258  Identities=18%  Similarity=0.193  Sum_probs=145.7

Q ss_pred             ccccceeeEEeecCCc----cccceeeccCCCCccccccccccccccccccceeccccceeeeccc---------cccee
Q 002470          589 FYTKDVRAFHIEGEGK----TTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAAS---------SQRVV  655 (918)
Q Consensus       589 fYsk~v~Afh~e~~s~----~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS---------~q~~V  655 (918)
                      .|--+...||+- +..    ..++.+|+-+|--  .|-+.   +         .-|=|-.|.-+++         ....|
T Consensus        15 v~V~d~~~~~~~-~~v~ViD~~~~~v~g~i~~G--~~P~~---~---------~spDg~~lyva~~~~~R~~~G~~~d~V   79 (352)
T TIGR02658        15 VYVLDPGHFAAT-TQVYTIDGEAGRVLGMTDGG--FLPNP---V---------VASDGSFFAHASTVYSRIARGKRTDYV   79 (352)
T ss_pred             EEEECCcccccC-ceEEEEECCCCEEEEEEEcc--CCCce---e---------ECCCCCEEEEEeccccccccCCCCCEE
Confidence            555555566665 322    3556677755533  11111   1         2244556777777         78999


Q ss_pred             EEEEccCCceEEEEeec-cc-eeeeccCCccceecccc-EEEee---cceeeeeecCCCCcceeeeeecCCceeEEEEee
Q 002470          656 TVYDIRDGEQIMQWEVQ-KP-VLTMDYSSPLQWRNRGK-LVVAE---AETISLWDVNSLNPQTLLSVSSCGRKISALHVN  729 (918)
Q Consensus       656 ~~yDIRDGe~vMkWevq-kp-V~~M~YSSPlQWRnrgK-vViAe---~e~islWDVnSL~pq~llsV~~~Gkki~aLHV~  729 (918)
                      .|||+..++.+-+.++- +| .+.+.|..=++.-.-|| ++|+-   .-++++.|+.+-.--.-..|+- ++.||+--=.
T Consensus        80 ~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~  158 (352)
T TIGR02658        80 EVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAND  158 (352)
T ss_pred             EEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCC
Confidence            99999999999887762 22 13444555556667888 55565   3489999999876554444432 3444442000


Q ss_pred             cccccccCcccee----------eccccc--c--------------CCCceeecC-CceeeeeecCC-cccccccccC--
Q 002470          730 NTDAELGGGVRQR----------VSSAEA--E--------------GNDGVFCTP-DSINILDFRHP-AGIGLKIPKF--  779 (918)
Q Consensus       730 NtDAE~gGGVRQR----------vSSse~--E--------------gnDGvfcT~-dsiNvlDFR~P-sGIGlKip~~--  779 (918)
                      +--+-|+=|-.+.          +.+...  -              ++.-+|.|. -.|.++||.-. +.....+..+  
T Consensus       159 ~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~  238 (352)
T TIGR02658       159 TFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTE  238 (352)
T ss_pred             ccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccc
Confidence            0001122222222          222222  0              111233333 35778886332 2222222221  


Q ss_pred             ---------CC-ccceeeecCCeEEEeeeeeccccccCCcccceeceeccceeeeeeecCCCCcccccccceeeecCCc-
Q 002470          780 ---------GV-NAQSVFSRGDSIFLGCCNVRSTGKKQPSSQVQQFSLRKQRLMNTYSLPESNAHSYHSAITQVWGNSN-  848 (918)
Q Consensus       780 ---------g~-~~qSvfsrGDsVf~G~t~~~~~~k~q~~s~vqq~SlRk~~Lv~tYslPesNah~h~saItQVWGnSn-  848 (918)
                               |+ ..-.+=.+|.-+|+......--.-+.+...|.-+.++.++.+.+..+-.   .+|+.++||   .-. 
T Consensus       239 ~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~---Dgkp  312 (352)
T TIGR02658       239 AEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQ---DAKP  312 (352)
T ss_pred             cccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECC---CCCe
Confidence                     21 1122333788999966522222335576789999999999999988754   677777776   344 


Q ss_pred             eeeeeec-cc-eeeeecccccC
Q 002470          849 LVMGISG-EG-LFVFDALSNDG  868 (918)
Q Consensus       849 ~Vm~~cG-~G-LFvFda~~~d~  868 (918)
                      +++.+|+ .| +.|||+.....
T Consensus       313 ~lyvtn~~s~~VsViD~~t~k~  334 (352)
T TIGR02658       313 LLYALSTGDKTLYIFDAETGKE  334 (352)
T ss_pred             EEEEeCCCCCcEEEEECcCCeE
Confidence            7788885 35 99999876543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=89.13  E-value=29  Score=35.63  Aligned_cols=141  Identities=23%  Similarity=0.311  Sum_probs=73.9

Q ss_pred             CceEEeeecCCCcceeeccCccccceecCCCccCCCCccceEEEecCCCCCCCccEEEEeccCCCCccccccccccccce
Q 002470          515 GESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTKDV  594 (918)
Q Consensus       515 GE~vLLAHdDgsCSyyDiAN~EeKavYkpPs~vs~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWDfYsk~v  594 (918)
                      |+.|.++..||...-+|.++-+..-.+.-+..+.          .+|-.|   +..|++++..              -.+
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~----------~~p~v~---~~~v~v~~~~--------------g~l  117 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLS----------GGVGAD---GGLVFVGTEK--------------GEV  117 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcc----------cceEEc---CCEEEEEcCC--------------CEE
Confidence            5677778888888889988887766665555332          234344   2334433321              135


Q ss_pred             eeEEeecCCccccceeeccCCCCccccccccccccccccccceeccccceeeecccccceeEEEEccCCceEEEEeeccc
Q 002470          595 RAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKP  674 (918)
Q Consensus       595 ~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWevqkp  674 (918)
                      .||..+.|..-=.+    +++..      ..+......         |-+++.  +....|.+||+++|+.+-+.+.+.|
T Consensus       118 ~ald~~tG~~~W~~----~~~~~------~~~~p~v~~---------~~v~v~--~~~g~l~a~d~~tG~~~W~~~~~~~  176 (377)
T TIGR03300       118 IALDAEDGKELWRA----KLSSE------VLSPPLVAN---------GLVVVR--TNDGRLTALDAATGERLWTYSRVTP  176 (377)
T ss_pred             EEEECCCCcEeeee----ccCce------eecCCEEEC---------CEEEEE--CCCCeEEEEEcCCCceeeEEccCCC
Confidence            55555444221100    11110      000000000         223332  3456799999999999877777777


Q ss_pred             eeee-ccCCccceeccccEEEeec-ceeeeeec
Q 002470          675 VLTM-DYSSPLQWRNRGKLVVAEA-ETISLWDV  705 (918)
Q Consensus       675 V~~M-~YSSPlQWRnrgKvViAe~-e~islWDV  705 (918)
                      .+.+ .+++|+-..  |.|++.-. ..+.-+|.
T Consensus       177 ~~~~~~~~sp~~~~--~~v~~~~~~g~v~ald~  207 (377)
T TIGR03300       177 ALTLRGSASPVIAD--GGVLVGFAGGKLVALDL  207 (377)
T ss_pred             ceeecCCCCCEEEC--CEEEEECCCCEEEEEEc
Confidence            6654 367787553  44444332 23444444

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=88.70  E-value=18  Score=32.70  Aligned_cols=85  Identities=20%  Similarity=0.409  Sum_probs=51.6

Q ss_pred             cceeccccceeeecccccceeEEEEccCCceEEE-EeeccceeeeccCCccceeccccEEE--eecceeeeeecCCCCcc
Q 002470          635 QWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQ-WEVQKPVLTMDYSSPLQWRNRGKLVV--AEAETISLWDVNSLNPQ  711 (918)
Q Consensus       635 qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMk-WevqkpV~~M~YSSPlQWRnrgKvVi--Ae~e~islWDVnSL~pq  711 (918)
                      .+.|.|.|+.++.+++....|.+||++.|+.+.. +.-..... +.     .|...|++++  ..-.+|.+||..+... 
T Consensus       203 ~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~d~~~~~~~~~~~~~-  275 (466)
T COG2319         203 SLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VS-----SFSPDGSLLASGSSDGTIRLWDLRSSSS-  275 (466)
T ss_pred             EEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eE-----eECCCCCEEEEecCCCcEEEeeecCCCc-
Confidence            3444499995555588888999999998988873 33322221 21     3434444443  3456799999998887 


Q ss_pred             eeeeeecCCceeEEE
Q 002470          712 TLLSVSSCGRKISAL  726 (918)
Q Consensus       712 ~llsV~~~Gkki~aL  726 (918)
                      .+.........|.++
T Consensus       276 ~~~~~~~~~~~v~~~  290 (466)
T COG2319         276 LLRTLSGHSSSVLSV  290 (466)
T ss_pred             EEEEEecCCccEEEE
Confidence            222222224555555

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=87.93  E-value=32  Score=34.61  Aligned_cols=182  Identities=10%  Similarity=0.142  Sum_probs=86.3

Q ss_pred             eecccccceeEEEEccC-CceEEEEeeccceeeeccCCccceeccccEE-Eee--cceeeeeecCCC-CcceeeeeecCC
Q 002470          646 ASAASSQRVVTVYDIRD-GEQIMQWEVQKPVLTMDYSSPLQWRNRGKLV-VAE--AETISLWDVNSL-NPQTLLSVSSCG  720 (918)
Q Consensus       646 ~StaS~q~~V~~yDIRD-Ge~vMkWevqkpV~~M~YSSPlQWRnrgKvV-iAe--~e~islWDVnSL-~pq~llsV~~~G  720 (918)
                      ..++...+.|++||+.+ |+    +++-+-+-.....++|.+-..|+.+ ++.  ...|..||++.- .-+.+-.+...|
T Consensus         5 y~~~~~~~~I~~~~~~~~g~----l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~   80 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGA----LTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPG   80 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCc----eeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCC
Confidence            33445568899999974 53    2222222222344556666567754 442  356777888621 111111222211


Q ss_pred             ceeEEEEeecccccccCccceeeccccccCCCceeec---CCceeeeeecCCcccccccc---cCCCccceeee-cCCeE
Q 002470          721 RKISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCT---PDSINILDFRHPAGIGLKIP---KFGVNAQSVFS-RGDSI  793 (918)
Q Consensus       721 kki~aLHV~NtDAE~gGGVRQRvSSse~EgnDGvfcT---~dsiNvlDFR~PsGIGlKip---~~g~~~qSvfs-rGDsV  793 (918)
                      . .  -|+.               -+ . .+.-+|.+   ...|-|+|+.....+...+.   ......+..|+ .|..+
T Consensus        81 ~-p--~~i~---------------~~-~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l  140 (330)
T PRK11028         81 S-P--THIS---------------TD-H-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTL  140 (330)
T ss_pred             C-c--eEEE---------------EC-C-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEE
Confidence            1 0  1110               00 0 00112222   24566777653222222221   11112333354 57788


Q ss_pred             EEeeeeeccccccCCcccceeceecc-ceee----eeeecCCCCcccccccceeeecCCceeeeee--ccceeeeecc
Q 002470          794 FLGCCNVRSTGKKQPSSQVQQFSLRK-QRLM----NTYSLPESNAHSYHSAITQVWGNSNLVMGIS--GEGLFVFDAL  864 (918)
Q Consensus       794 f~G~t~~~~~~k~q~~s~vqq~SlRk-~~Lv----~tYslPesNah~h~saItQVWGnSn~Vm~~c--G~GLFvFda~  864 (918)
                      |+.+...         -.|--|.+.. +.|.    .++.+|. ..++||.+++   .+..++..++  ..-+++||.-
T Consensus       141 ~v~~~~~---------~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~---pdg~~lyv~~~~~~~v~v~~~~  205 (330)
T PRK11028        141 WVPCLKE---------DRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFH---PNQQYAYCVNELNSSVDVWQLK  205 (330)
T ss_pred             EEeeCCC---------CEEEEEEECCCCcccccCCCceecCC-CCCCceEEEC---CCCCEEEEEecCCCEEEEEEEe
Confidence            8766421         3566677765 3332    2344444 4678887664   5566766666  3566777753

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=86.81  E-value=0.73  Score=51.34  Aligned_cols=167  Identities=24%  Similarity=0.340  Sum_probs=95.1

Q ss_pred             eeeeecccchhhhhhhhcccccccccceeee--cCc-eEEeeecCCCcceeeccCccccceecCCCccCCCCccceEEEe
Q 002470          483 AFVIDEGIEDTCTYQLNEIGQRTSTGGWFVS--EGE-SVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIR  559 (918)
Q Consensus       483 ~~~i~EEtee~c~~ql~~iG~K~stgGWFVs--EGE-~vLLAHdDgsCSyyDiAN~EeKavYkpPs~vs~n~W~DCWiiR  559 (918)
                      .+-|=+-.+-.|.|.|.|-     ||-= .|  --+ -|+-+-.|++...||+.|.|--.+|.--...   +    --+|
T Consensus       218 TikiWD~n~~~c~~~L~GH-----tGSV-LCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHcea---V----Lhlr  284 (499)
T KOG0281|consen  218 TIKIWDKNSLECLKILTGH-----TGSV-LCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEA---V----LHLR  284 (499)
T ss_pred             ceEEeccccHHHHHhhhcC-----CCcE-EeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcce---e----EEEE
Confidence            4445566677899988773     2211 11  112 3344567899999999999866666532210   0    0112


Q ss_pred             cCCCCCCCccEEEEeccCCCCccccccccccccceeeEEeecCCccccceeeccCCCCccccccccccccccccccceec
Q 002470          560 AAGADGCSGRYVVAASAGNSLDSGFCSWDFYTKDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYK  639 (918)
Q Consensus       560 ApG~DGcSgryVVAASAGntldsgFCSWDfYsk~v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYr  639 (918)
                      .      +.-|.|+.|--    -..--||.          ...+.-+-|.||.   +-    |-+.-.+.-.+.      
T Consensus       285 f------~ng~mvtcSkD----rsiaVWdm----------~sps~it~rrVLv---GH----rAaVNvVdfd~k------  331 (499)
T KOG0281|consen  285 F------SNGYMVTCSKD----RSIAVWDM----------ASPTDITLRRVLV---GH----RAAVNVVDFDDK------  331 (499)
T ss_pred             E------eCCEEEEecCC----ceeEEEec----------cCchHHHHHHHHh---hh----hhheeeeccccc------
Confidence            1      33467765532    22233443          2222123333332   22    212222222222      


Q ss_pred             cccceeeecccccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEeec--ceeeeeecCC
Q 002470          640 PCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEA--ETISLWDVNS  707 (918)
Q Consensus       640 PCGPLl~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~--e~islWDVnS  707 (918)
                           ++-+||+.+++++||+-.||-|---.-.+-=+|     =|||  |||+||.+.  -+|.|||.+|
T Consensus       332 -----yIVsASgDRTikvW~~st~efvRtl~gHkRGIA-----ClQY--r~rlvVSGSSDntIRlwdi~~  389 (499)
T KOG0281|consen  332 -----YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIA-----CLQY--RDRLVVSGSSDNTIRLWDIEC  389 (499)
T ss_pred             -----eEEEecCCceEEEEeccceeeehhhhcccccce-----ehhc--cCeEEEecCCCceEEEEeccc
Confidence                 466789999999999999999866554443333     2566  588999886  5899999987

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=85.51  E-value=8.8  Score=43.99  Aligned_cols=138  Identities=18%  Similarity=0.282  Sum_probs=104.0

Q ss_pred             ceeeecccccceeEEEEccCC-ceEEEEeeccceeeeccCCccceeccccEEEeecceeeeeecCCCCcceeeeeecCCc
Q 002470          643 PLIASAASSQRVVTVYDIRDG-EQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAETISLWDVNSLNPQTLLSVSSCGR  721 (918)
Q Consensus       643 PLl~StaS~q~~V~~yDIRDG-e~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~e~islWDVnSL~pq~llsV~~~Gk  721 (918)
                      |-|+-|.|-...|++||+|-- +.||...---||=.|-|-.+     -+-++-|+--.+.+||+-+= -|.|-+...--|
T Consensus       166 ~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lps-----gs~iasAgGn~vkVWDl~~G-~qll~~~~~H~K  239 (487)
T KOG0310|consen  166 DHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPS-----GSLIASAGGNSVKVWDLTTG-GQLLTSMFNHNK  239 (487)
T ss_pred             CeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCC-----CCEEEEcCCCeEEEEEecCC-ceehhhhhcccc
Confidence            448889999999999999987 99999999999988877554     45788999999999998643 344555555689


Q ss_pred             eeEEEEeecccccccCccceeeccccccCCCceeecCCceeeeeecCCcccccccccCCCccceeeecCCeEEEeeeeec
Q 002470          722 KISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCTPDSINILDFRHPAGIGLKIPKFGVNAQSVFSRGDSIFLGCCNVR  801 (918)
Q Consensus       722 ki~aLHV~NtDAE~gGGVRQRvSSse~EgnDGvfcT~dsiNvlDFR~PsGIGlKip~~g~~~qSvfsrGDsVf~G~t~~~  801 (918)
                      .|.||-++- |-       +|+=|.--.++==||-|.+.==|.-|+.|.+| +        --.|+-.++.|++|-+++-
T Consensus       240 tVTcL~l~s-~~-------~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pv-L--------siavs~dd~t~viGmsnGl  302 (487)
T KOG0310|consen  240 TVTCLRLAS-DS-------TRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPV-L--------SIAVSPDDQTVVIGMSNGL  302 (487)
T ss_pred             eEEEEEeec-CC-------ceEeecccccceEEEEccceEEEEeeecccce-e--------eEEecCCCceEEEecccce
Confidence            999998764 32       88877777677778887766555556666554 1        1246667889999999886


Q ss_pred             cc
Q 002470          802 ST  803 (918)
Q Consensus       802 ~~  803 (918)
                      ..
T Consensus       303 v~  304 (487)
T KOG0310|consen  303 VS  304 (487)
T ss_pred             ee
Confidence            53

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=85.43  E-value=11  Score=42.30  Aligned_cols=196  Identities=18%  Similarity=0.325  Sum_probs=122.2

Q ss_pred             ecCceEEeeecCCCcceeeccCccccceecCCCccCCCCccceEE-EecCCCCCCCccEEEEeccCCCCccccccccccc
Q 002470          513 SEGESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWI-IRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYT  591 (918)
Q Consensus       513 sEGE~vLLAHdDgsCSyyDiAN~EeKavYkpPs~vs~n~W~DCWi-iRApG~DGcSgryVVAASAGntldsgFCSWDfYs  591 (918)
                      =.|.-||=+--|.+.--||+.+-..+-.|.+|+.         |+ +=+|--||     -+-||++|+.  -.=-|=+=+
T Consensus       203 P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e---------wvr~v~v~~DG-----ti~As~s~dq--tl~vW~~~t  266 (406)
T KOG0295|consen  203 PLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE---------WVRMVRVNQDG-----TIIASCSNDQ--TLRVWVVAT  266 (406)
T ss_pred             ecCCeeeecccccceeEEecccceeEEeccCchH---------hEEEEEecCCe-----eEEEecCCCc--eEEEEEecc
Confidence            3468899999999999999999999999999987         43 23455565     3555655543  344688888


Q ss_pred             cceeeEEeecCCccccceeeccCCCCccccccccccccccccccceeccccceeeecccccceeEEEEccCCceEEEEee
Q 002470          592 KDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEV  671 (918)
Q Consensus       592 k~v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWev  671 (918)
                      +++++---+-+ .+.--.+.+|+.--..++-    +  +++.-      =||.|.| +|-.+++|+|||--|..+|.-- 
T Consensus       267 ~~~k~~lR~hE-h~vEci~wap~~~~~~i~~----a--t~~~~------~~~~l~s-~SrDktIk~wdv~tg~cL~tL~-  331 (406)
T KOG0295|consen  267 KQCKAELREHE-HPVECIAWAPESSYPSISE----A--TGSTN------GGQVLGS-GSRDKTIKIWDVSTGMCLFTLV-  331 (406)
T ss_pred             chhhhhhhccc-cceEEEEecccccCcchhh----c--cCCCC------CccEEEe-ecccceEEEEeccCCeEEEEEe-
Confidence            87666433332 3444555566544322221    1  11111      3666665 6889999999999998877521 


Q ss_pred             ccceeeeccCCccceeccccEE--EeecceeeeeecCCCCcceeeeeecCCceeEEEEee-cccccccCccceeecc
Q 002470          672 QKPVLTMDYSSPLQWRNRGKLV--VAEAETISLWDVNSLNPQTLLSVSSCGRKISALHVN-NTDAELGGGVRQRVSS  745 (918)
Q Consensus       672 qkpV~~M~YSSPlQWRnrgKvV--iAe~e~islWDVnSL~pq~llsV~~~Gkki~aLHV~-NtDAE~gGGVRQRvSS  745 (918)
                          ---.+-+-+-.+..||..  +|+--+|.+||++-+  |-+++.+...-=+.+|-.- |-+--+.|+|-|-+-.
T Consensus       332 ----ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~--~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~Kv  402 (406)
T KOG0295|consen  332 ----GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL--QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKV  402 (406)
T ss_pred             ----cccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc--eeeeccCCCcceeEEEecCCCCceEEeccccceeee
Confidence                111122333445678866  467779999999854  4444444433333333322 3456678888886643

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=85.40  E-value=2.2  Score=46.33  Aligned_cols=62  Identities=31%  Similarity=0.509  Sum_probs=53.5

Q ss_pred             cccceeeecccccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEeecceeeeeecCC
Q 002470          640 PCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAETISLWDVNS  707 (918)
Q Consensus       640 PCGPLl~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~e~islWDVnS  707 (918)
                      |=|-|++| +-+-..+.+||++.|+-+..-|.+.||.+|.||.     ||==|-.|-+++|.+||.++
T Consensus       202 pDGslcas-Ggkdg~~~LwdL~~~k~lysl~a~~~v~sl~fsp-----nrywL~~at~~sIkIwdl~~  263 (315)
T KOG0279|consen  202 PDGSLCAS-GGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSP-----NRYWLCAATATSIKIWDLES  263 (315)
T ss_pred             CCCCEEec-CCCCceEEEEEccCCceeEeccCCCeEeeEEecC-----CceeEeeccCCceEEEeccc
Confidence            66889998 5677888999999999999999999999999985     44457788899999999654

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=85.11  E-value=12  Score=40.17  Aligned_cols=147  Identities=20%  Similarity=0.276  Sum_probs=83.5

Q ss_pred             cccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEee---cceeeeeecCCCCcceeeeeecCCceeEEE
Q 002470          650 SSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAE---AETISLWDVNSLNPQTLLSVSSCGRKISAL  726 (918)
Q Consensus       650 S~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe---~e~islWDVnSL~pq~llsV~~~Gkki~aL  726 (918)
                      +....|+++|+..++.|-+..+-.--.++++|      .-||.+++.   ...++++|..+|+|-.  .|+..+..    
T Consensus        55 ~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s------~DG~~~~v~n~~~~~v~v~D~~tle~v~--~I~~~~~~----  122 (369)
T PF02239_consen   55 NRDGTVSVIDLATGKVVATIKVGGNPRGIAVS------PDGKYVYVANYEPGTVSVIDAETLEPVK--TIPTGGMP----  122 (369)
T ss_dssp             ETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--------TTTEEEEEEEETTEEEEEETTT--EEE--EEE--EE-----
T ss_pred             cCCCeEEEEECCcccEEEEEecCCCcceEEEc------CCCCEEEEEecCCCceeEecccccccee--eccccccc----
Confidence            45679999999999999999999999999998      568866654   5899999999998754  33332211    


Q ss_pred             EeecccccccCccceeecccc-ccCCC-ceeecC--CceeeeeecCCcccccccccCCCccceeeecCC-eEEEeeeeec
Q 002470          727 HVNNTDAELGGGVRQRVSSAE-AEGND-GVFCTP--DSINILDFRHPAGIGLKIPKFGVNAQSVFSRGD-SIFLGCCNVR  801 (918)
Q Consensus       727 HV~NtDAE~gGGVRQRvSSse-~EgnD-GvfcT~--dsiNvlDFR~PsGIGlKip~~g~~~qSvfsrGD-sVf~G~t~~~  801 (918)
                               +++..=|+++-- +-+++ =||+--  +.|.++||..|.-+-.++...|....-.|-..| .-|+.+.+..
T Consensus       123 ---------~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~s  193 (369)
T PF02239_consen  123 ---------VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGS  193 (369)
T ss_dssp             ---------TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGG
T ss_pred             ---------ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccccc
Confidence                     111333554332 22333 344433  578899999886554444444443333443334 4455544332


Q ss_pred             cccccCCcccceeceeccceeeee
Q 002470          802 STGKKQPSSQVQQFSLRKQRLMNT  825 (918)
Q Consensus       802 ~~~k~q~~s~vqq~SlRk~~Lv~t  825 (918)
                      -        .|.-+.+++++++..
T Consensus       194 n--------~i~viD~~~~k~v~~  209 (369)
T PF02239_consen  194 N--------KIAVIDTKTGKLVAL  209 (369)
T ss_dssp             T--------EEEEEETTTTEEEEE
T ss_pred             c--------eeEEEeeccceEEEE
Confidence            2        444455666666654

...

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=84.94  E-value=21  Score=40.95  Aligned_cols=215  Identities=20%  Similarity=0.267  Sum_probs=109.2

Q ss_pred             cCChhHHHHHHhhccCcCcccccCCcccccccceeecccccccCCCCccccCCCCCcceeEeccccc-----c-cccccc
Q 002470          405 EENPIALQFLASLNKDENKVSAKSGLVDLECDEVFETDEAAKSGEKGLSCMFSGKGEAELELTSDER-----L-DEFDDQ  478 (918)
Q Consensus       405 dEN~iA~EFLAsL~~e~~kv~~~~~~~~le~~~v~E~~~a~~s~~q~~s~~~~g~~~~e~~L~adE~-----l-eeFDdQ  478 (918)
                      +++..|-++...+-.....+-......+|+.....|-+....-..    .++.+..+ .+...+.|+     + ++=||+
T Consensus        51 ~~~~~a~~~~~~~l~~~~d~d~~~~~~~l~e~d~d~ydee~~g~~----~~f~s~~g-~~~y~sne~DPYvt~~d~e~de  125 (463)
T KOG0270|consen   51 DAEESAEEQGKGMLDSSGDVDDDLKEYELKEYDMDEYDEEADGEI----ELFSSLLG-IAVYPSNEKDPYVTIPDDEDDE  125 (463)
T ss_pred             hhhhhhhhhcccccccccccCccchhhhhhhhccccchhcccccc----cccccccC-ceeccCCCCCCccccCCcccch
Confidence            344455555555334444555555555666666666554442100    01111111 222233343     2 333445


Q ss_pred             cccceeeeecccchhhhhhhhcccccccccceeeecCceEEeeecCCCcceeec--cCccccceecCCCccCC-----CC
Q 002470          479 ENRQAFVIDEGIEDTCTYQLNEIGQRTSTGGWFVSEGESVLLAHDDGSCSYYDI--TNCEDKAVYKPPTAVSS-----SI  551 (918)
Q Consensus       479 EN~~~~~i~EEtee~c~~ql~~iG~K~stgGWFVsEGE~vLLAHdDgsCSyyDi--AN~EeKavYkpPs~vs~-----n~  551 (918)
                      |.++.++| .-++-                        -||.||-+.--+|-+|  -|.++-+.|---..+=|     -.
T Consensus       126 ee~de~~V-~psDn------------------------lIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~e  180 (463)
T KOG0270|consen  126 EEKDEEQV-KPSDN------------------------LILCARNEDDVSYLEVYVYNEEEENLYVHHDFILPAFPLCIE  180 (463)
T ss_pred             hhccccee-ccCCc------------------------EEEEeeccCCceEEEEEEEcCCCcceeEecceeccCcchhhh
Confidence            55655555 22221                        4666776666666553  45566555543333322     35


Q ss_pred             ccceEEEecCCCCCCCccEEEEeccCCCCccccccccccccceeeEEeecCCccccceeeccCCCCcccccccccccccc
Q 002470          552 WRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTKDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVP  631 (918)
Q Consensus       552 W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWDfYsk~v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~  631 (918)
                      |-||     |-.+|=.|-||+-    ||+|+-.==||..-++-.-=.+..|+. .|+ .+.+.    ..|.|..+--.-+
T Consensus       181 wld~-----~~~~~~~gNyvAi----Gtmdp~IeIWDLDI~d~v~P~~~LGs~-~sk-~~~k~----~k~~~~~~gHTda  245 (463)
T KOG0270|consen  181 WLDH-----GSKSGGAGNYVAI----GTMDPEIEIWDLDIVDAVLPCVTLGSK-ASK-KKKKK----GKRSNSASGHTDA  245 (463)
T ss_pred             hhhc-----CCCCCCCcceEEE----eccCceeEEeccccccccccceeechh-hhh-hhhhh----cccccccccchHH
Confidence            8888     8889999999854    789999999998766654434444421 111 11111    1133332211101


Q ss_pred             ccccceeccccceeeecccccceeEEEEccCCce
Q 002470          632 ETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQ  665 (918)
Q Consensus       632 e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~  665 (918)
                      -.-.=|-|-===+||| +|--++|++||+--|.-
T Consensus       246 vl~Ls~n~~~~nVLaS-gsaD~TV~lWD~~~g~p  278 (463)
T KOG0270|consen  246 VLALSWNRNFRNVLAS-GSADKTVKLWDVDTGKP  278 (463)
T ss_pred             HHHHHhccccceeEEe-cCCCceEEEEEcCCCCc
Confidence            1111233322235555 57788999999998874

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=84.73  E-value=30  Score=31.30  Aligned_cols=81  Identities=23%  Similarity=0.481  Sum_probs=51.7

Q ss_pred             ceeeecccccceeEEEEccCCceEEEEee---ccceeeeccCCccceeccccEEEeecce--eeeeecCCCCcceeeeee
Q 002470          643 PLIASAASSQRVVTVYDIRDGEQIMQWEV---QKPVLTMDYSSPLQWRNRGKLVVAEAET--ISLWDVNSLNPQTLLSVS  717 (918)
Q Consensus       643 PLl~StaS~q~~V~~yDIRDGe~vMkWev---qkpV~~M~YSSPlQWRnrgKvViAe~e~--islWDVnSL~pq~llsV~  717 (918)
                      .+++ +++....+.+||++.... .-+..   +.+|..+.+..      .+..+++....  +.+||.....-.......
T Consensus       254 ~~~~-~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  325 (466)
T COG2319         254 SLLA-SGSSDGTIRLWDLRSSSS-LLRTLSGHSSSVLSVAFSP------DGKLLASGSSDGTVRLWDLETGKLLSSLTLK  325 (466)
T ss_pred             CEEE-EecCCCcEEEeeecCCCc-EEEEEecCCccEEEEEECC------CCCEEEEeeCCCcEEEEEcCCCceEEEeeec
Confidence            4455 889999999999998876 22222   56777775544      55566654433  899988776654444411


Q ss_pred             cCCceeEEEEeeccc
Q 002470          718 SCGRKISALHVNNTD  732 (918)
Q Consensus       718 ~~Gkki~aLHV~NtD  732 (918)
                      ..+..+..++. +.|
T Consensus       326 ~~~~~~~~~~~-~~~  339 (466)
T COG2319         326 GHEGPVSSLSF-SPD  339 (466)
T ss_pred             ccCCceEEEEE-CCC
Confidence            22225777777 544

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=84.55  E-value=6.4  Score=42.73  Aligned_cols=172  Identities=21%  Similarity=0.343  Sum_probs=113.6

Q ss_pred             cceeEEEEccCCce--EEEEeec-cceeeeccCCccceeccccEEEeecc--eeeeeecCCCCcceeeeeecCCceeEEE
Q 002470          652 QRVVTVYDIRDGEQ--IMQWEVQ-KPVLTMDYSSPLQWRNRGKLVVAEAE--TISLWDVNSLNPQTLLSVSSCGRKISAL  726 (918)
Q Consensus       652 q~~V~~yDIRDGe~--vMkWevq-kpV~~M~YSSPlQWRnrgKvViAe~e--~islWDVnSL~pq~llsV~~~Gkki~aL  726 (918)
                      ---|.+|||+.+..  ||..|-- |-|.+..|--      -|+-...+.|  ++.+||+.+|.-|.++.++++ -.-.+|
T Consensus        60 ~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~------dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~sp-Vn~vvl  132 (311)
T KOG0315|consen   60 NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC------DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSP-VNTVVL  132 (311)
T ss_pred             CCeeEEEEccCCCCCceeEEeccCCceEEEEEee------cCeEEEecCCCceEEEEeccCcccchhccCCCC-cceEEe
Confidence            44689999999876  8888876 7787776543      4555555555  899999999999999999954 444578


Q ss_pred             EeecccccccCccceeeccccccCCCceeecC-CceeeeeecCCcccccccccCCCccceeeecCCeEEEeeeeecc---
Q 002470          727 HVNNTDAELGGGVRQRVSSAEAEGNDGVFCTP-DSINILDFRHPAGIGLKIPKFGVNAQSVFSRGDSIFLGCCNVRS---  802 (918)
Q Consensus       727 HV~NtDAE~gGGVRQRvSSse~EgnDGvfcT~-dsiNvlDFR~PsGIGlKip~~g~~~qSvfsrGDsVf~G~t~~~~---  802 (918)
                      |-|-|  ||                  +.|++ -.|-|.|.+.-+=--+-||.-++.+||+--.-|-=++-+.+.+-   
T Consensus       133 hpnQt--eL------------------is~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cy  192 (311)
T KOG0315|consen  133 HPNQT--EL------------------ISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCY  192 (311)
T ss_pred             cCCcc--eE------------------EeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEE
Confidence            87755  32                  11222 24778999988888889999999999976655555555555432   


Q ss_pred             ----ccccCCcc---cceeceeccceeeeeeecCCCCccccccc---ceeeecCCceeee
Q 002470          803 ----TGKKQPSS---QVQQFSLRKQRLMNTYSLPESNAHSYHSA---ITQVWGNSNLVMG  852 (918)
Q Consensus       803 ----~~k~q~~s---~vqq~SlRk~~Lv~tYslPesNah~h~sa---ItQVWGnSn~Vm~  852 (918)
                          +. .|..+   .+-+|-++.+-...-.--|+.- |..-.+   ---||-..||+|+
T Consensus       193 vW~l~~-~~~~s~l~P~~k~~ah~~~il~C~lSPd~k-~lat~ssdktv~iwn~~~~~kl  250 (311)
T KOG0315|consen  193 VWRLLN-HQTASELEPVHKFQAHNGHILRCLLSPDVK-YLATCSSDKTVKIWNTDDFFKL  250 (311)
T ss_pred             EEEccC-CCccccceEhhheecccceEEEEEECCCCc-EEEeecCCceEEEEecCCceee
Confidence                22 33222   2446777766555444334432 222211   2358988888765

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=84.05  E-value=23  Score=33.05  Aligned_cols=156  Identities=21%  Similarity=0.277  Sum_probs=76.6

Q ss_pred             eeecCceEEeeecCCCcceeeccCccccce-ecCCCccCCCCccceEEEecCCCCCCCccEEEEeccCCCCccccccccc
Q 002470          511 FVSEGESVLLAHDDGSCSYYDITNCEDKAV-YKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDF  589 (918)
Q Consensus       511 FVsEGE~vLLAHdDgsCSyyDiAN~EeKav-YkpPs~vs~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWDf  589 (918)
                      .+..+..|+++-.|+++..+|+.+-+.+-. |..+....+ .+..+    +|=.+   |.+++++..             
T Consensus        72 ~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~----~~~~~---~~~~~~~~~-------------  130 (238)
T PF13360_consen   72 PVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG-VRSSS----SPAVD---GDRLYVGTS-------------  130 (238)
T ss_dssp             EEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS-TB--S----EEEEE---TTEEEEEET-------------
T ss_pred             eeecccccccccceeeeEecccCCcceeeeeccccccccc-ccccc----CceEe---cCEEEEEec-------------
Confidence            466677777777888999999888887555 443311111 11111    11111   444555443             


Q ss_pred             cccceeeEEeecCCccccceeeccCCCCc--cccccccccccccccccceeccccceeeecccccceeEEEEccCCceEE
Q 002470          590 YTKDVRAFHIEGEGKTTSRTVLGPLPNNN--IYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIM  667 (918)
Q Consensus       590 Ysk~v~Afh~e~~s~~~Srt~L~pL~nn~--~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vM  667 (918)
                       ...+.++..+.|..--...+  +.|...  .+.-..........         +-.|.-+....+.+.+ |++.|+.+ 
T Consensus       131 -~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~~g~~~~~-d~~tg~~~-  196 (238)
T PF13360_consen  131 -SGKLVALDPKTGKLLWKYPV--GEPRGSSPISSFSDINGSPVIS---------DGRVYVSSGDGRVVAV-DLATGEKL-  196 (238)
T ss_dssp             -CSEEEEEETTTTEEEEEEES--STT-SS--EEEETTEEEEEECC---------TTEEEEECCTSSEEEE-ETTTTEEE-
T ss_pred             -cCcEEEEecCCCcEEEEeec--CCCCCCcceeeecccccceEEE---------CCEEEEEcCCCeEEEE-ECCCCCEE-
Confidence             45567777776633222211  111110  00000000000111         1233333333345666 99999955 


Q ss_pred             EEeeccceeeeccCCccceeccccEEEee-cceeeeeecCC
Q 002470          668 QWEVQKPVLTMDYSSPLQWRNRGKLVVAE-AETISLWDVNS  707 (918)
Q Consensus       668 kWevqkpV~~M~YSSPlQWRnrgKvViAe-~e~islWDVnS  707 (918)
                       |  ++++-+ .++.|+  -..+.|+++. .-.|..||+.+
T Consensus       197 -w--~~~~~~-~~~~~~--~~~~~l~~~~~~~~l~~~d~~t  231 (238)
T PF13360_consen  197 -W--SKPISG-IYSLPS--VDGGTLYVTSSDGRLYALDLKT  231 (238)
T ss_dssp             -E--EECSS--ECECEE--CCCTEEEEEETTTEEEEEETTT
T ss_pred             -E--EecCCC-ccCCce--eeCCEEEEEeCCCEEEEEECCC
Confidence             8  444322 333343  4556666665 58888898876

...

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=82.18  E-value=2.9  Score=49.42  Aligned_cols=175  Identities=21%  Similarity=0.353  Sum_probs=101.9

Q ss_pred             eeecCceEEeeecCCCcceeeccCccccceecCCCccCCCCccceEEEec-CCCCCCCccEEEEeccCCCCccccccccc
Q 002470          511 FVSEGESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRA-AGADGCSGRYVVAASAGNSLDSGFCSWDF  589 (918)
Q Consensus       511 FVsEGE~vLLAHdDgsCSyyDiAN~EeKavYkpPs~vs~n~W~DCWiiRA-pG~DGcSgryVVAASAGntldsgFCSWDf  589 (918)
                      |.-+-.-+|=.-.|+|..+|.+--.---..|+.+-.-       -|.+|- |=     |-|.++||.-.|-  ..-|=|.
T Consensus       459 FsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~P-------VwdV~F~P~-----GyYFatas~D~tA--rLWs~d~  524 (707)
T KOG0263|consen  459 FSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAP-------VWDVQFAPR-----GYYFATASHDQTA--RLWSTDH  524 (707)
T ss_pred             ecccccceeeccCCcceeeeecccceeEEEecCCCcc-------eeeEEecCC-----ceEEEecCCCcee--eeeeccc
Confidence            4444555566678999999999887778889965431       355553 32     8899888776654  2222232


Q ss_pred             cc-----------cceeeEEeecCCc---cccceeec--cCCCCccccccccccccccccccceeccccceeeecccccc
Q 002470          590 YT-----------KDVRAFHIEGEGK---TTSRTVLG--PLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQR  653 (918)
Q Consensus       590 Ys-----------k~v~Afh~e~~s~---~~Srt~L~--pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~  653 (918)
                      +-           -+|.+||-...-.   .+-|||=-  -.+++  .+|=-.-...+  -.-==|-|||=.|+|.+. -.
T Consensus       525 ~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~--~VRiF~GH~~~--V~al~~Sp~Gr~LaSg~e-d~  599 (707)
T KOG0263|consen  525 NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN--SVRIFTGHKGP--VTALAFSPCGRYLASGDE-DG  599 (707)
T ss_pred             CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc--EEEEecCCCCc--eEEEEEcCCCceEeeccc-CC
Confidence            11           1356677432211   11122211  11222  12200000001  111237899999998665 56


Q ss_pred             eeEEEEccCCceEEEEeec-cceeeeccCCccceeccccEEEeecc-eeeeeecCCCC
Q 002470          654 VVTVYDIRDGEQIMQWEVQ-KPVLTMDYSSPLQWRNRGKLVVAEAE-TISLWDVNSLN  709 (918)
Q Consensus       654 ~V~~yDIRDGe~vMkWevq-kpV~~M~YSSPlQWRnrgKvViAe~e-~islWDVnSL~  709 (918)
                      .|++|||..|..||.---+ .-|-.|.||     |.-+-+|+++++ ++.|||+.-.+
T Consensus       600 ~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS-----~dg~vLasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  600 LIKIWDLANGSLVKQLKGHTGTIYSLSFS-----RDGNVLASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             cEEEEEcCCCcchhhhhcccCceeEEEEe-----cCCCEEEecCCCCeEEEEEchhhc
Confidence            7999999999999876544 456677774     344455666666 69999986443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=82.17  E-value=70  Score=33.59  Aligned_cols=45  Identities=22%  Similarity=0.290  Sum_probs=30.5

Q ss_pred             cccceeEEEEccCCceEEEEeeccceeee-ccCCccceeccccEEEee
Q 002470          650 SSQRVVTVYDIRDGEQIMQWEVQKPVLTM-DYSSPLQWRNRGKLVVAE  696 (918)
Q Consensus       650 S~q~~V~~yDIRDGe~vMkWevqkpV~~M-~YSSPlQWRnrgKvViAe  696 (918)
                      +....|.+||..+|+++-+-+...|.+.+ .+++|+-+.  |.|+++.
T Consensus       167 ~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~--~~v~~~~  212 (394)
T PRK11138        167 TSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAF--GGAIVGG  212 (394)
T ss_pred             CCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEEC--CEEEEEc
Confidence            44567999999999987555555555443 368998764  4566543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=82.05  E-value=2.6  Score=40.91  Aligned_cols=62  Identities=16%  Similarity=0.497  Sum_probs=47.5

Q ss_pred             eccccceeeeccc--ccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEeecce--------eeeeecC
Q 002470          638 YKPCGPLIASAAS--SQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAET--------ISLWDVN  706 (918)
Q Consensus       638 YrPCGPLl~StaS--~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~e~--------islWDVn  706 (918)
                      +-|.|-+||.+..  .++.|.+||+++.+.|.+.+...       .+-++|-.-|+.+++-+-.        +.+|+++
T Consensus       108 wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-------~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  108 WSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-------ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             ECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-------EEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence            4599999998764  35789999999999998877553       3567899999999886532        4666653

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=81.71  E-value=7.2  Score=44.84  Aligned_cols=89  Identities=20%  Similarity=0.441  Sum_probs=55.2

Q ss_pred             eccccceeeecccccceeEEEEccCCceEEEEee-ccceeeeccC--CccceeccccEEEeec---ceeeeeecCCCCcc
Q 002470          638 YKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEV-QKPVLTMDYS--SPLQWRNRGKLVVAEA---ETISLWDVNSLNPQ  711 (918)
Q Consensus       638 YrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWev-qkpV~~M~YS--SPlQWRnrgKvViAe~---e~islWDVnSL~pq  711 (918)
                      |-|=|-||+ +||...++|+|-+-++-.+-.-.+ .|-+...-+|  -|..|-.+--++||-+   -++++|||.+.  +
T Consensus       367 ~n~tg~LLa-S~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g--v  443 (524)
T KOG0273|consen  367 WNPTGSLLA-SCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG--V  443 (524)
T ss_pred             ECCCCceEE-EecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC--c
Confidence            567787776 578999999999888765543322 2223332222  3556655555566544   57899999985  5


Q ss_pred             eeeeeecCCceeEEEEee
Q 002470          712 TLLSVSSCGRKISALHVN  729 (918)
Q Consensus       712 ~llsV~~~Gkki~aLHV~  729 (918)
                      +||+..-.+-.||+|-..
T Consensus       444 ~i~~f~kH~~pVysvafS  461 (524)
T KOG0273|consen  444 PIHTLMKHQEPVYSVAFS  461 (524)
T ss_pred             eeEeeccCCCceEEEEec
Confidence            566655555555555544

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=80.92  E-value=3  Score=40.53  Aligned_cols=58  Identities=26%  Similarity=0.575  Sum_probs=38.7

Q ss_pred             cccee-eecccccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEe-ecc----eeeeeecC
Q 002470          641 CGPLI-ASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVA-EAE----TISLWDVN  706 (918)
Q Consensus       641 CGPLl-~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViA-e~e----~islWDVn  706 (918)
                      =|--+ +.+....+.|++||++ ++.|..-. +.++-      .+.|--.|+.++. +..    .|.|||++
T Consensus        70 ~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n------~i~wsP~G~~l~~~g~~n~~G~l~~wd~~  133 (194)
T PF08662_consen   70 NGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRN------TISWSPDGRFLVLAGFGNLNGDLEFWDVR  133 (194)
T ss_pred             CCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCce------EEEECCCCCEEEEEEccCCCcEEEEEECC
Confidence            34443 3444556799999997 88887755 23333      3667778886665 332    48999999

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=80.34  E-value=14  Score=43.06  Aligned_cols=240  Identities=21%  Similarity=0.335  Sum_probs=138.2

Q ss_pred             cCCCcceeeccCcc--ccceecCCCc-cCCCCcc-ceEEEecCCCCCCCccEEEEec--cCCCCccccccccccccceee
Q 002470          523 DDGSCSYYDITNCE--DKAVYKPPTA-VSSSIWR-DCWIIRAAGADGCSGRYVVAAS--AGNSLDSGFCSWDFYTKDVRA  596 (918)
Q Consensus       523 dDgsCSyyDiAN~E--eKavYkpPs~-vs~n~W~-DCWiiRApG~DGcSgryVVAAS--AGntldsgFCSWDfYsk~v~A  596 (918)
                      -.|....||-+|.|  -|.+|.+=.+ +..=-|- |-=-|-|-| +|. +||+.+..  .||++-.    -+=++|.+-+
T Consensus        79 ~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avG-EGr-erfg~~F~~DSG~SvGe----i~GhSr~ins  152 (603)
T KOG0318|consen   79 VSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVG-EGR-ERFGHVFLWDSGNSVGE----ITGHSRRINS  152 (603)
T ss_pred             CcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEe-cCc-cceeEEEEecCCCccce----eeccceeEee
Confidence            46899999999976  5777776554 2333342 222333443 343 45655543  2444332    2235666666


Q ss_pred             EEeecCCccccceeec------------cCCCCccccccccccccccccccceeccccceeeecccccceeEEEEccCCc
Q 002470          597 FHIEGEGKTTSRTVLG------------PLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGE  664 (918)
Q Consensus       597 fh~e~~s~~~Srt~L~------------pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe  664 (918)
                      -|+...  ..-|.+-+            |.-=..+.|-- .--+.+     ==|-|=|-+.||+. +.+.|-+||=.+||
T Consensus       153 ~~~Kps--RPfRi~T~sdDn~v~ffeGPPFKFk~s~r~H-skFV~~-----VRysPDG~~Fat~g-sDgki~iyDGktge  223 (603)
T KOG0318|consen  153 VDFKPS--RPFRIATGSDDNTVAFFEGPPFKFKSSFREH-SKFVNC-----VRYSPDGSRFATAG-SDGKIYIYDGKTGE  223 (603)
T ss_pred             eeccCC--CceEEEeccCCCeEEEeeCCCeeeeeccccc-ccceee-----EEECCCCCeEEEec-CCccEEEEcCCCcc
Confidence            555443  22233222            22222222210 001111     13889999998765 56778899999999


Q ss_pred             eEEEEeeccceeeeccCCccceeccc-cEEEeec-ceeeeeecCCCCcceeeeeecC----CceeEEEEeecccccccCc
Q 002470          665 QIMQWEVQKPVLTMDYSSPLQWRNRG-KLVVAEA-ETISLWDVNSLNPQTLLSVSSC----GRKISALHVNNTDAELGGG  738 (918)
Q Consensus       665 ~vMkWevqkpV~~M~YSSPlQWRnrg-KvViAe~-e~islWDVnSL~pq~llsV~~~----Gkki~aLHV~NtDAE~gGG  738 (918)
                      +|---|=+.+.-+--|.  |-|---+ +++-+.+ -+|.+|||+...-  .-+.++.    .++|-||--  -|      
T Consensus       224 ~vg~l~~~~aHkGsIfa--lsWsPDs~~~~T~SaDkt~KIWdVs~~sl--v~t~~~~~~v~dqqvG~lWq--kd------  291 (603)
T KOG0318|consen  224 KVGELEDSDAHKGSIFA--LSWSPDSTQFLTVSADKTIKIWDVSTNSL--VSTWPMGSTVEDQQVGCLWQ--KD------  291 (603)
T ss_pred             EEEEecCCCCccccEEE--EEECCCCceEEEecCCceEEEEEeeccce--EEEeecCCchhceEEEEEEe--CC------
Confidence            99999977766555553  5666444 4444554 4899999988732  2233332    334555543  11      


Q ss_pred             cceeeccccccCCCceeecCCceeeeeecCCcccccccccCC--CccceeeecCCeEEEeeeeecc
Q 002470          739 VRQRVSSAEAEGNDGVFCTPDSINILDFRHPAGIGLKIPKFG--VNAQSVFSRGDSIFLGCCNVRS  802 (918)
Q Consensus       739 VRQRvSSse~EgnDGvfcT~dsiNvlDFR~PsGIGlKip~~g--~~~qSvfsrGDsVf~G~t~~~~  802 (918)
                         ++=+         +.-.-.||.|+--.|+ +=+-|--|-  .++-++-.+|+-+|.|.-.+.-
T Consensus       292 ---~lIt---------VSl~G~in~ln~~d~~-~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I  344 (603)
T KOG0318|consen  292 ---HLIT---------VSLSGTINYLNPSDPS-VLKVISGHNKSITALTVSPDGKTIYSGSYDGHI  344 (603)
T ss_pred             ---eEEE---------EEcCcEEEEecccCCC-hhheecccccceeEEEEcCCCCEEEeeccCceE
Confidence               2111         1223458999988888 656666665  5566778889999999876543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	918
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.3 bits (153), Expect = 3e-10
 Identities = 61/403 (15%), Positives = 132/403 (32%), Gaps = 87/403 (21%)

Query: 189 LKVEKYDKVDVLNSENRLEKIDRSVGLGLNESDEKISRDSKVSETLKEKSLSEEGLSTKV 248
           L  E+ D   ++ S++ +    R     L++ +E + +   V E L+    + + L + +
Sbjct: 46  LSKEEID--HIIMSKDAVSGTLRLFWTLLSKQEEMVQK--FVEEVLRI---NYKFLMSPI 98

Query: 249 GVKFPSKLHEKLTFLEGKVKRIQSDIKRTKEMLDMNNPDATKLILSDIQEKISGIEKAMG 308
             +          ++E +  R+ +D           N    K  +S   +    + +A+ 
Sbjct: 99  KTEQRQPSMMTRMYIE-QRDRLYND-----------NQVFAKYNVS-RLQPYLKLRQALL 145

Query: 309 NVAGDSGVKIVGSKGVGKNV------EGSKIVEMSQDKI-------VDGVKGLVKGLKSE 355
            +     V I G  G GK           K+      KI        +  + +++ L+  
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK- 204

Query: 356 ELEARLFPHHKLLRNRTSKPASESSQSDELNDEGARSDLKVEEKLLSPIEENPIALQFLA 415
                L   +++  N TS+   + S + +L     +++L+   +LL   +     L  L 
Sbjct: 205 -----LL--YQIDPNWTSRS--DHSSNIKLRIHSIQAELR---RLLK-SKPYENCLLVLL 251

Query: 416 SLNKDENKVSAKSGLVDLECDEVFETDEAAKSGEKGLSCMFSGKGEAELELTSDERLDEF 475
           ++ ++    +A     +L C  +  T                        ++ D      
Sbjct: 252 NV-QNAKAWNA----FNLSCKILLTTRFK--------QVTDFLSAATTTHISLDHHSMTL 298

Query: 476 DDQENRQAF--VIDEGIED----TCT---YQLNEIGQRTSTG-----GWFVSEGESVLLA 521
              E +      +D   +D      T    +L+ I +    G      W     + +   
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358

Query: 522 HDDGSCSYYDITNCEDKAVYK-----P-----PTAVSSSIWRD 554
            +    S   +   E + ++      P     PT + S IW D
Sbjct: 359 IES---SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	918
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	97.58
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	96.72
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	96.69
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	96.36
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	94.89
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	93.92
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	92.84
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	92.78
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	90.21
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	90.02
d1tbga_	340	beta1-subunit of the signal-transducing G protein	89.64
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	89.29
d1tbga_	340	beta1-subunit of the signal-transducing G protein	88.57
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	84.41

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.58  E-value=0.0018  Score=39.22  Aligned_cols=10  Identities=0%  Similarity=0.056  Sum_probs=3.4

Q ss_pred             CEECCCEEEE
Q ss_conf             0120220212
Q 002470          815 FSLRKQRLMN  824 (918)
Q Consensus       815 ~SlRk~~Lv~  824 (918)
                      |.++.++++.
T Consensus       335 wd~~~~~~~~  344 (388)
T d1erja_         335 WDKKSGNPLL  344 (388)
T ss_dssp             EETTTCCEEE
T ss_pred             EECCCCCEEE
T ss_conf             9999996999

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.018  Score=32.54  Aligned_cols=62  Identities=21%  Similarity=0.369  Sum_probs=26.0

Q ss_pred             CCCCCEEEECCCCCCEEEEEECCCCCEEEEEEE-CCCEEEECCCCCCCEECCCCEEEEEC--CEEEEEECCC
Q ss_conf             036640221234550358997447854788763-05044320489632000552799411--2234432278
Q 002470          639 KPCGPLIASAASSQRVVTVYDIRDGEQIMQWEV-QKPVLTMDYSSPLQWRNRGKLVVAEA--ETISLWDVNS  707 (918)
Q Consensus       639 rPCGPLl~StaS~q~~V~~yDIRDGe~vMkWev-qkpV~~M~YSSPlQWRnrgKvViAe~--e~islWDVnS  707 (918)
                      .|.+.++++ ++....+.+||++.++.+..... +.+|..|+++      ..+..++.+.  -.|-+||++.
T Consensus       150 ~~~~~~l~s-~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s------~~~~~~~~~~~d~~v~i~d~~~  214 (337)
T d1gxra_         150 SPDSKVCFS-CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS------NDGTKLWTGGLDNTVRSWDLRE  214 (337)
T ss_dssp             CTTSSEEEE-EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC------TTSSEEEEEETTSEEEEEETTT
T ss_pred             CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCC
T ss_conf             111111111-1111111111111111111111111111101234------4432112235665532111111

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.69  E-value=0.019  Score=32.39  Aligned_cols=63  Identities=21%  Similarity=0.290  Sum_probs=34.0

Q ss_pred             CCCCCEEEECCCCCCEEEEEECCCCCEEEEEEE-CCCEEEECCCCCCCEECCCCEEEEEC--CEEEEEECCC
Q ss_conf             036640221234550358997447854788763-05044320489632000552799411--2234432278
Q 002470          639 KPCGPLIASAASSQRVVTVYDIRDGEQIMQWEV-QKPVLTMDYSSPLQWRNRGKLVVAEA--ETISLWDVNS  707 (918)
Q Consensus       639 rPCGPLl~StaS~q~~V~~yDIRDGe~vMkWev-qkpV~~M~YSSPlQWRnrgKvViAe~--e~islWDVnS  707 (918)
                      .|-|++++-+++.-..|.+||++.++.++.+.. .++|..+.++.      .|++++++.  ..|.+||...
T Consensus       155 ~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p------~~~~l~~~~~d~~v~~~d~~~  220 (311)
T d1nr0a1         155 KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP------DGSLFASTGGDGTIVLYNGVD  220 (311)
T ss_dssp             CSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT------TSSEEEEEETTSCEEEEETTT
T ss_pred             CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCC
T ss_conf             211101200011221111111111111111111111111123476------422121111111110001244

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.36  E-value=0.03  Score=31.00  Aligned_cols=52  Identities=10%  Similarity=0.256  Sum_probs=19.1

Q ss_pred             EEEEEECCCCCEEEEEEE-CCCEEEECCCCCCCEECCCCEEEEECC--EEEEEEC
Q ss_conf             358997447854788763-050443204896320005527994112--2344322
Q 002470          654 VVTVYDIRDGEQIMQWEV-QKPVLTMDYSSPLQWRNRGKLVVAEAE--TISLWDV  705 (918)
Q Consensus       654 ~V~~yDIRDGe~vMkWev-qkpV~~M~YSSPlQWRnrgKvViAe~e--~islWDV  705 (918)
                      .|.+||+++|+.++.+.. ..+|..|+++.-+.|-..|.+++++.+  +|.+||+
T Consensus       331 ~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~  385 (388)
T d1erja_         331 GVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY  385 (388)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEECCCEEEEEEE
T ss_conf             7999999999699999688997899998467425899999999918997999762

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.11  Score=27.34  Aligned_cols=149  Identities=11%  Similarity=0.278  Sum_probs=84.1

Q ss_pred             EECCCEEEEEECCCCCCEEECCCCCCCCEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             53174578530599731000258523411229986678876412899627998887538999406997765443432222
Q 002470          512 VSEGESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYT  591 (918)
Q Consensus       512 VsEGE~vLLAHdDgsCSyyDiAN~EeKavYkpPs~vs~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWDfYs  591 (918)
                      -..|.-++.+-.||+...||+.+...+....-+.. .+.++.-+|   .|     .+.+++.++..+    ...-||..+
T Consensus       106 s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~---~~-----~~~~l~s~~~d~----~i~~~~~~~  172 (337)
T d1gxra_         106 LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSS-APACYALAI---SP-----DSKVCFSCCSDG----NIAVWDLHN  172 (337)
T ss_dssp             CTTSSEEEEEESSSEEEEEECCCC--EEEEEEECS-SSCEEEEEE---CT-----TSSEEEEEETTS----CEEEEETTT
T ss_pred             CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCC---CC-----CCCCCCCCCCCC----CCCCCCCCC
T ss_conf             67998898861233211111111111111111111-111111111---11-----111111111111----111111111


Q ss_pred             CCEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEECCCCCCEEEEEECCCCCEEEEEEE
Q ss_conf             22155775068842243351048999633445543223566562000036640221234550358997447854788763
Q 002470          592 KDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEV  671 (918)
Q Consensus       592 k~v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWev  671 (918)
                      .++........                    ....++.        +-|.|.+++. ++....+.+||++.|+.+..++.
T Consensus       173 ~~~~~~~~~~~--------------------~~v~~l~--------~s~~~~~~~~-~~~d~~v~i~d~~~~~~~~~~~~  223 (337)
T d1gxra_         173 QTLVRQFQGHT--------------------DGASCID--------ISNDGTKLWT-GGLDNTVRSWDLREGRQLQQHDF  223 (337)
T ss_dssp             TEEEEEECCCS--------------------SCEEEEE--------ECTTSSEEEE-EETTSEEEEEETTTTEEEEEEEC
T ss_pred             CCCCCCCCCCC--------------------CCCCCCC--------CCCCCCCCCC-CCCCCCCCCCCCCCCEEECCCCC
T ss_conf             11111111111--------------------1111012--------3444321122-35665532111111000002466


Q ss_pred             CCCEEEECCCCCCCEECCCCEEEEEC--CEEEEEECCCC
Q ss_conf             05044320489632000552799411--22344322788
Q 002470          672 QKPVLTMDYSSPLQWRNRGKLVVAEA--ETISLWDVNSL  708 (918)
Q Consensus       672 qkpV~~M~YSSPlQWRnrgKvViAe~--e~islWDVnSL  708 (918)
                      ..+|.++.++.      .++.++++.  -.|.+||+++-
T Consensus       224 ~~~i~~l~~~~------~~~~l~~~~~d~~i~i~d~~~~  256 (337)
T d1gxra_         224 TSQIFSLGYCP------TGEWLAVGMESSNVEVLHVNKP  256 (337)
T ss_dssp             SSCEEEEEECT------TSSEEEEEETTSCEEEEETTSS
T ss_pred             CCCEEEEEECC------CCCCCCEECCCCCCCCCCCCCC
T ss_conf             66157999715------3030000002564211111111

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.92  E-value=0.17  Score=25.94  Aligned_cols=148  Identities=16%  Similarity=0.223  Sum_probs=76.9

Q ss_pred             CCCEEEEEECCCCCCEEECCCCCC--------CCEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf             174578530599731000258523--------411229986678876412899627998887538999406997765443
Q 002470          514 EGESVLLAHDDGSCSYYDITNCED--------KAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFC  585 (918)
Q Consensus       514 EGE~vLLAHdDgsCSyyDiAN~Ee--------KavYkpPs~vs~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFC  585 (918)
                      .|+-+.-+..||+...+|+...+.        +.+|.+.   ...++.-+|-        ..|++++++++|+..--  +
T Consensus        76 ~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~---~~~v~~v~~s--------~~~~~l~~~~~~~~~~~--~  142 (325)
T d1pgua1          76 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVL---AGPISDISWD--------FEGRRLCVVGEGRDNFG--V  142 (325)
T ss_dssp             TCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECC---SSCEEEEEEC--------TTSSEEEEEECCSSCSE--E
T ss_pred             CCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCC---CCCEEEEEEC--------CCCCCCCEEECCCCCEE--E
T ss_conf             997999994899779854058862156510025411365---6737799989--------99882201001244047--8


Q ss_pred             CCCCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEECCCCCCEEEEEECCCCCE
Q ss_conf             43222222155775068842243351048999633445543223566562000036640221234550358997447854
Q 002470          586 SWDFYTKDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQ  665 (918)
Q Consensus       586 SWDfYsk~v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~  665 (918)
                      -|+.-+          +      ..+..+...  ..+  ..+        --+.|.+|.++-+++....+.+||++.++.
T Consensus       143 ~~~~~~----------~------~~~~~~~~h--~~~--v~~--------~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~  194 (325)
T d1pgua1         143 FISWDS----------G------NSLGEVSGH--SQR--INA--------CHLKQSRPMRSMTVGDDGSVVFYQGPPFKF  194 (325)
T ss_dssp             EEETTT----------C------CEEEECCSC--SSC--EEE--------EEECSSSSCEEEEEETTTEEEEEETTTBEE
T ss_pred             EEEECC----------C------CCCEEEEEC--CCC--CCC--------CCCCCCCCCEEEEEECCCCCCCCCCCCCCC
T ss_conf             885023----------3------110012001--234--321--------111234320688862111221111221100


Q ss_pred             EEEEEE----CCCEEEECCCCCCCEECCCCEEEEE--CCEEEEEECCC
Q ss_conf             788763----0504432048963200055279941--12234432278
Q 002470          666 IMQWEV----QKPVLTMDYSSPLQWRNRGKLVVAE--AETISLWDVNS  707 (918)
Q Consensus       666 vMkWev----qkpV~~M~YSSPlQWRnrgKvViAe--~e~islWDVnS  707 (918)
                      .-...+    ..+|..++++ |    +.++++++.  -..|-+||+++
T Consensus       195 ~~~~~~~~~~~~~v~~v~~~-p----d~~~~l~s~~~d~~i~iwd~~~  237 (325)
T d1pgua1         195 SASDRTHHKQGSFVRDVEFS-P----DSGEFVITVGSDRKISCFDGKS  237 (325)
T ss_dssp             EEEECSSSCTTCCEEEEEEC-S----TTCCEEEEEETTCCEEEEETTT
T ss_pred             CEECCCCCCCCCCCEEEEEC-C----CCCEECCCCCCCCCEEEEEECC
T ss_conf             00000015777752776303-4----5310000112332101343001

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.84  E-value=0.25  Score=24.81  Aligned_cols=163  Identities=17%  Similarity=0.224  Sum_probs=81.3

Q ss_pred             CCCEEEEEECCCCCCEEECCCCCCCCEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             17457853059973100025852341122998667887641289962799888753899940699776544343222222
Q 002470          514 EGESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTKD  593 (918)
Q Consensus       514 EGE~vLLAHdDgsCSyyDiAN~EeKavYkpPs~vs~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWDfYsk~  593 (918)
                      .|.-++-+-.||+.-.||+.+.+....++...   ..++.-+|.        ..+.+++.+...++    ..-|+....+
T Consensus        28 ~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~---~~V~~~~~~--------~~~~~~~~~~~~~~----~~~~~~~~~~   92 (317)
T d1vyhc1          28 VFSVMVSASEDATIKVWDYETGDFERTLKGHT---DSVQDISFD--------HSGKLLASCSADMT----IKLWDFQGFE   92 (317)
T ss_dssp             SSSEEEEEESSSCEEEEETTTCCCCEEECCCS---SCEEEEEEC--------TTSSEEEEEETTSC----CCEEETTSSC
T ss_pred             CCCEEEEEECCCEEEEEECCCCCEEEEEECCC---CCEEEEEEE--------CCCCCCCCCCCCCC----CCCCCCCCCC
T ss_conf             98999999389929999899997999995788---867777630--------11110111111111----0111001111


Q ss_pred             EEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf             15577506884224335104899963344554322356656200003664022123455035899744785478876305
Q 002470          594 VRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQK  673 (918)
Q Consensus       594 v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWevqk  673 (918)
                      .....                ...            ........+-|.+..+++ ++.-..+.+||++.+..+.......
T Consensus        93 ~~~~~----------------~~~------------~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~  143 (317)
T d1vyhc1          93 CIRTM----------------HGH------------DHNVSSVSIMPNGDHIVS-ASRDKTIKMWEVQTGYCVKTFTGHR  143 (317)
T ss_dssp             EEECC----------------CCC------------SSCEEEEEECSSSSEEEE-EETTSEEEEEETTTCCEEEEEECCS
T ss_pred             CCCCC----------------CCC------------CCCCEEEECCCCCCEEEE-ECCCCCEEEEECCCCEEEEEECCCC
T ss_conf             11110----------------000------------000000001699855776-5267523575114430346871677


Q ss_pred             -CEEEECCCCCCCEECCCCEEEEEC--CEEEEEECCCCCCCEEEEEECCCCEEEEEEE
Q ss_conf             -044320489632000552799411--2234432278896202432048812489995
Q 002470          674 -PVLTMDYSSPLQWRNRGKLVVAEA--ETISLWDVNSLNPQTLLSVSSCGRKISALHV  728 (918)
Q Consensus       674 -pV~~M~YSSPlQWRnrgKvViAe~--e~islWDVnSL~pq~llsV~~~Gkki~aLHV  728 (918)
                       ++..      ++|-..+++++++.  ..|.+||.++..+...+  ......+.++-.
T Consensus       144 ~~~~~------~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~--~~~~~~i~~~~~  193 (317)
T d1vyhc1         144 EWVRM------VRPNQDGTLIASCSNDQTVRVWVVATKECKAEL--REHRHVVECISW  193 (317)
T ss_dssp             SCEEE------EEECTTSSEEEEEETTSCEEEEETTTCCEEEEE--CCCSSCEEEEEE
T ss_pred             CCCEE------EECCCCCCEEEEEECCCEEEEEEECCCEEEEEE--ECCCCCCEEEEE
T ss_conf             76300------001667999999927982999751254034788--247787337998

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.78  E-value=0.26  Score=24.75  Aligned_cols=188  Identities=14%  Similarity=0.221  Sum_probs=92.4

Q ss_pred             CEEEECCCEEEEEECCCCCCEEECCCCCCCCEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             02453174578530599731000258523411229986678876412899627998887538999406997765443432
Q 002470          509 GWFVSEGESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWD  588 (918)
Q Consensus       509 GWFVsEGE~vLLAHdDgsCSyyDiAN~EeKavYkpPs~vs~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWD  588 (918)
                      -.|-..+.-++.+..|+....+|+.+.+....+..+...     ..|   -+...   .+.+++.++..++    ..-||
T Consensus       107 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~---~~~~l~~~~~d~~----v~~~~  171 (317)
T d1vyhc1         107 VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW-----VRM---VRPNQ---DGTLIASCSNDQT----VRVWV  171 (317)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC-----EEE---EEECT---TSSEEEEEETTSC----EEEEE
T ss_pred             EECCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCC-----CEE---EECCC---CCCEEEEEECCCE----EEEEE
T ss_conf             001699855776526752357511443034687167776-----300---00166---7999999927982----99975


Q ss_pred             CCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEECCCCCCEEEEEECCCCCEEEE
Q ss_conf             22222155775068842243351048999633445543223566562000036640221234550358997447854788
Q 002470          589 FYTKDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQ  668 (918)
Q Consensus       589 fYsk~v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMk  668 (918)
                      ..+......- .......  ..+.-.|+..   .  ............+..+.|+++++ ++....+.+||++.|..+..
T Consensus       172 ~~~~~~~~~~-~~~~~~i--~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~i~~~~~~~~~~~~~  242 (317)
T d1vyhc1         172 VATKECKAEL-REHRHVV--ECISWAPESS---Y--SSISEATGSETKKSGKPGPFLLS-GSRDKTIKMWDVSTGMCLMT  242 (317)
T ss_dssp             TTTCCEEEEE-CCCSSCE--EEEEECCSCG---G--GGGGGCCSCC-------CCEEEE-EETTSEEEEEETTTTEEEEE
T ss_pred             ECCCEEEEEE-ECCCCCC--EEEEEEECCC---C--CEEECCCCCEEEEECCCCCEEEE-CCCCCEEEEEECCCCCEEEE
T ss_conf             1254034788-2477873--3799863256---4--11103456303430258861475-16997899988899968899


Q ss_pred             EEE-CCCEEEECCCCCCCEECCCCEEEEEC--CEEEEEECCCCCCCEEEEEECCCCEEEEEEE
Q ss_conf             763-05044320489632000552799411--2234432278896202432048812489995
Q 002470          669 WEV-QKPVLTMDYSSPLQWRNRGKLVVAEA--ETISLWDVNSLNPQTLLSVSSCGRKISALHV  728 (918)
Q Consensus       669 Wev-qkpV~~M~YSSPlQWRnrgKvViAe~--e~islWDVnSL~pq~llsV~~~Gkki~aLHV  728 (918)
                      ... +.+|.+|.++.      .|++++++.  -+|-+||+.+..+  +.+.......|.++..
T Consensus       243 ~~~~~~~v~~~~~~~------~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~h~~~V~~~~~  297 (317)
T d1vyhc1         243 LVGHDNWVRGVLFHS------GGKFILSCADDKTLRVWDYKNKRC--MKTLNAHEHFVTSLDF  297 (317)
T ss_dssp             EECCSSCEEEEEECS------SSSCEEEEETTTEEEEECCTTSCC--CEEEECCSSCEEEEEE
T ss_pred             EECCCCCEEEEEECC------CCCEEEEEECCCEEEEEECCCCCE--EEEECCCCCCEEEEEE
T ss_conf             968899879999879------999999997989499999999919--9999289998899999

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.21  E-value=0.47  Score=22.98  Aligned_cols=74  Identities=9%  Similarity=0.049  Sum_probs=35.3

Q ss_pred             EEECCCEEEEEECCCCCCEEECCCCCCCCEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             45317457853059973100025852341122998667887641289962799888753899940699776544343222
Q 002470          511 FVSEGESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFY  590 (918)
Q Consensus       511 FVsEGE~vLLAHdDgsCSyyDiAN~EeKavYkpPs~vs~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWDfY  590 (918)
                      |-..|.-++-+-.||+.-.||+........+....+-...+..=||.-       -++.+++.++.-+    -.+-||..
T Consensus        19 fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~-------~~~~~l~sg~~d~----~v~~w~~~   87 (342)
T d1yfqa_          19 IIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-------NTDLQIYVGTVQG----EILKVDLI   87 (342)
T ss_dssp             EEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-------SSSEEEEEEETTS----CEEEECSS
T ss_pred             EECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEEC-------CCCCEEEECCCCC----CEEEEECC
T ss_conf             958999999997999299997569986368988558999889999958-------9997899812653----11454204


Q ss_pred             CCCEE
Q ss_conf             22215
Q 002470          591 TKDVR  595 (918)
Q Consensus       591 sk~v~  595 (918)
                      .....
T Consensus        88 ~~~~~   92 (342)
T d1yfqa_          88 GSPSF   92 (342)
T ss_dssp             SSSSE
T ss_pred             CCCCC
T ss_conf             43200

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.02  E-value=0.49  Score=22.88  Aligned_cols=25  Identities=8%  Similarity=0.158  Sum_probs=12.2

Q ss_pred             CCCEEEEEECCCCCCEEECCCCCCC
Q ss_conf             1745785305997310002585234
Q 002470          514 EGESVLLAHDDGSCSYYDITNCEDK  538 (918)
Q Consensus       514 EGE~vLLAHdDgsCSyyDiAN~EeK  538 (918)
                      .|.-++.+-.|+++..+|+...+.+
T Consensus        62 ~~~~l~s~s~D~~i~vWd~~~~~~~   86 (371)
T d1k8kc_          62 DSNRIVTCGTDRNAYVWTLKGRTWK   86 (371)
T ss_dssp             TTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCCEEEEEECCCEEEEEEECCCCCC
T ss_conf             9999999979993999862033211

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.64  E-value=0.52  Score=22.69  Aligned_cols=69  Identities=14%  Similarity=0.249  Sum_probs=44.3

Q ss_pred             CCEECCCCCEEEECCCCCCEEEEEECCCCCEEEEEEE-CCCEEEECCCCCCCEECCCCEEEEEC--CEEEEEECCCCCC
Q ss_conf             2000036640221234550358997447854788763-05044320489632000552799411--2234432278896
Q 002470          635 QWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEV-QKPVLTMDYSSPLQWRNRGKLVVAEA--ETISLWDVNSLNP  710 (918)
Q Consensus       635 qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWev-qkpV~~M~YSSPlQWRnrgKvViAe~--e~islWDVnSL~p  710 (918)
                      .....|.+.++++ ++....|.+||++.++.+..+.. +.+|.++.++.      .|+.++++.  -.|.+||+....+
T Consensus       189 ~~~~~~~~~~~~~-~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p------~~~~l~s~s~d~~i~~~~~~~~~~  260 (340)
T d1tbga_         189 SLSLAPDTRLFVS-GACDASAKLWDVREGMCRQTFTGHESDINAICFFP------NGNAFATGSDDATCRLFDLRADQE  260 (340)
T ss_dssp             EEEECTTSSEEEE-EETTTEEEEEETTTTEEEEEECCCSSCEEEEEECT------TSSEEEEEETTSCEEEEETTTTEE
T ss_pred             EECCCCCCCEEEE-EECCCEEEEEECCCCCEEEEEECCCCCEEEEEECC------CCCEEEEEECCCEEEEEEECCCCC
T ss_conf             3001244212687-60573699999999948899957889858999979------989999996999699975212211

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=89.29  E-value=0.55  Score=22.52  Aligned_cols=24  Identities=21%  Similarity=0.444  Sum_probs=11.0

Q ss_pred             CCEEEEEECCCCCCEEECCCCCCC
Q ss_conf             745785305997310002585234
Q 002470          515 GESVLLAHDDGSCSYYDITNCEDK  538 (918)
Q Consensus       515 GE~vLLAHdDgsCSyyDiAN~EeK  538 (918)
                      |+-++-+..||+.-.+|+.+.+..
T Consensus        24 g~~l~s~s~Dg~v~vWd~~~~~~~   47 (299)
T d1nr0a2          24 GKTLFSADAEGHINSWDISTGISN   47 (299)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEE
T ss_pred             CCEEEEECCCCEEEEEECCCCCEE
T ss_conf             999999908992999999999688

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.57  E-value=0.62  Score=22.19  Aligned_cols=55  Identities=20%  Similarity=0.257  Sum_probs=27.6

Q ss_pred             CCCEEEEEECCCCCCEEECCCCCCCCEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCC
Q ss_conf             174578530599731000258523411229986678876412899627998887538999406997
Q 002470          514 EGESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNS  579 (918)
Q Consensus       514 EGE~vLLAHdDgsCSyyDiAN~EeKavYkpPs~vs~n~W~DCWiiRApG~DGcSgryVVAASAGnt  579 (918)
                      .|.-++-+-.||+.-.+|+.+.+....+....   ..++.=+|   .|     .|+|+++++..++
T Consensus        66 ~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~---~~v~~v~~---~~-----~~~~l~~~~~d~~  120 (340)
T d1tbga_          66 DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS---SWVMTCAY---AP-----SGNYVACGGLDNI  120 (340)
T ss_dssp             TSSEEEEEETTTEEEEEETTTTEEEEEEECSC---SCEEEEEE---CT-----TSSEEEEEETTCC
T ss_pred             CCCEEEEEECCCCEEEEECCCCEEEEEEECCC---CCEEEEEE---EC-----CCEEEEEECCCCE
T ss_conf             99999999789955563102102579972465---33775676---01-----2114431013320

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.41  E-value=1  Score=20.75  Aligned_cols=191  Identities=7%  Similarity=0.094  Sum_probs=87.4

Q ss_pred             CCCCCEEEECCC-CCCEEEEEECCCCCEEEEEEE-CCCEEEECCCCCCCEECCCCEEEEE-CCEEEEEECCCCCCCEEEE
Q ss_conf             036640221234-550358997447854788763-0504432048963200055279941-1223443227889620243
Q 002470          639 KPCGPLIASAAS-SQRVVTVYDIRDGEQIMQWEV-QKPVLTMDYSSPLQWRNRGKLVVAE-AETISLWDVNSLNPQTLLS  715 (918)
Q Consensus       639 rPCGPLl~StaS-~q~~V~~yDIRDGe~vMkWev-qkpV~~M~YSSPlQWRnrgKvViAe-~e~islWDVnSL~pq~lls  715 (918)
                      -|-|.+|++.+. ....+.+++...|..+-.... ..+|..+.++..    +...++.+. --+|-+||+..........
T Consensus       124 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~~~~~~~~d~~v~~~d~~~~~~~~~~~  199 (325)
T d1pgua1         124 DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQS----RPMRSMTVGDDGSVVFYQGPPFKFSASDR  199 (325)
T ss_dssp             CTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSS----SSCEEEEEETTTEEEEEETTTBEEEEEEC
T ss_pred             CCCCCCCCEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCC----CCCEEEEEECCCCCCCCCCCCCCCCEECC
T ss_conf             99988220100124404788850233110012001234321111234----32068886211122111122110000000


Q ss_pred             EE-CCCCEEEEEEEECCCCCCCCCCCEEECCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCC-CCEEEE----C
Q ss_conf             20-48812489995225533357300010233215798023167830245303776544235568875-201431----4
Q 002470          716 VS-SCGRKISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCTPDSINILDFRHPAGIGLKIPKFGVN-AQSVFS----R  789 (918)
Q Consensus       716 V~-~~Gkki~aLHV~NtDAE~gGGVRQRvSSse~EgnDGvfcT~dsiNvlDFR~PsGIGlKip~~g~~-~qSvfs----r  789 (918)
                      .. .....|+++...-..-.      .=++          -+.+..|.++|.+...-+. .+..+... ...+|+    +
T Consensus       200 ~~~~~~~~v~~v~~~pd~~~------~l~s----------~~~d~~i~iwd~~~~~~~~-~l~~~~~~v~~~~~s~~~~d  262 (325)
T d1pgua1         200 THHKQGSFVRDVEFSPDSGE------FVIT----------VGSDRKISCFDGKSGEFLK-YIEDDQEPVQGGIFALSWLD  262 (325)
T ss_dssp             SSSCTTCCEEEEEECSTTCC------EEEE----------EETTCCEEEEETTTCCEEE-ECCBTTBCCCSCEEEEEESS
T ss_pred             CCCCCCCCCEEEEECCCCCE------ECCC----------CCCCCCEEEEEECCCCCCC-CCCCCCCCCCCCEEEEECCC
T ss_conf             01577775277630345310------0001----------1233210134300122211-11111111111000000368


Q ss_pred             CCEEEEEEEEECCCCCCCCCCCCEECEECCCEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEEECCC-EEEEE
Q ss_conf             88378830000012234786310000120220212220589886553322104203874045551561-13531
Q 002470          790 GDSIFLGCCNVRSTGKKQPSSQVQQFSLRKQRLMNTYSLPESNAHSYHSAITQVWGNSNLVMGISGEG-LFVFD  862 (918)
Q Consensus       790 GDsVf~G~t~~~~~~k~q~~s~vqq~SlRk~~Lv~tYslPesNah~h~saItQVWGnSn~Vm~~cG~G-LFvFd  862 (918)
                      |.-+..|...          ..+.-|.++.++++.+|.+.....+....+  -.|.....++.++.-| +.+||
T Consensus       263 g~~l~s~s~D----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~s~s~dg~i~vwd  324 (325)
T d1pgua1         263 SQKFATVGAD----------ATIRVWDVTTSKCVQKWTLDKQQLGNQQVG--VVATGNGRIISLSLDGTLNFYE  324 (325)
T ss_dssp             SSEEEEEETT----------SEEEEEETTTTEEEEEEECCTTCGGGCEEE--EEEEETTEEEEEETTSCEEEEE
T ss_pred             CCEEEEEECC----------CEEEEEECCCCCEEEEEEECCCCCCCEEEE--EEECCCCEEEEEECCCEEEEEE
T ss_conf             9999999589----------939999999997889999548740676999--9988999999997999999997