Citrus Sinensis ID: 002508

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910----
Protein Sequence
MPVYDKPVYDDDVDIFKGLPGLRTSSTPAAAASSSGANFDDVFASFSRSSAKHESARESSPLDDLLGNLGKKETESRVKSEKDVSAFDDLLPGFGRSRSPSSNRSTSESSQSQKPPSNSTKTASSVMEDPFGVSESTSTHVGSSSEVFTDRLEEIGKFGGSGSAKVNGSSVSGGVFDDLDSLNILGKSVPPVSPEINKRGNDRSLRSKSVSGTQTHPRKESIDRSSVENFDGYAQNNTPVDNFQGSNDTLFNMPSVATDSSRSAGRATSPPSYMSATDSLRSAGRATSPPSYMSATDSLRSAGRATSPPSYTSASPSETNSQVNTTPKSEDLFDSAEDVWLTVSEIPLFTQPTSAPPPSRPPPPRPTRVSKLETGNARKKANEYSSFSNSPQCTHSPKSTRAGTRSSAASQIDELEDFAMSRSWNNVNEYGEVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPARRTSVGASSNMRKASSTTNIVDDLSSIFGAAGSSAGEFQDVEGETEERRRARLERHQRTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEELF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccHHHccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHcHHHHHHHHccHHHHHHHHHHHHHHHcHccccccccHHHcccHHHHHHHHHHHEEEEcHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccHHcc
Coil and Loop (DISEMBL)
mpvydkpvydddvdifkglpglrtsstpaaaasssganfddvfasfsrssakhesaressplddllgnlgkketesrvksekdvsafddllpgfgrsrspssnrstsessqsqkppsnstktassvmedpfgvseststhvgssseVFTDRLEEIGkfggsgsakvngssvsggvfddldslnilgksvppvspeinkrgndrslrsksvsgtqthprkesidrssvenfdgyaqnntpvdnfqgsndtlfnmpsvatdssrsagratsppsymsatdslrsagratsppsymsatdslrsagratsppsytsaspsetnsqvnttpksedlfdsaeDVWLTvseiplftqptsapppsrpppprptrvskletgnarkkaneyssfsnspqcthspkstragtrssaaSQIDELEDFAMSRSWnnvneygevpspedveSSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAArsresvqpdreerATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQnqqkndndlesffsmssrpssaprprantsdslfdsqskggpeparrtsvgassnmrkassttniVDDLSSIFgaagssagefqdvegETEERRRARLERHQRTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVlwpesgwqpvslTDLITAAAVKKCYRKatlcihpdkvqqKGANLQQKYIAEKVFDLLKEAWNKFNSEELF
Flexible Loop (DISEMBL)
mpvydkpvydddVDIFKGLPGLRTSSTpaaaasssgaNFDDVFASFSRSSAkhesaressplddllgnlgkketesrvksekdvsafddllpgfgrsrspssnrstsessqsqkppsnstkTASSVMEDPFGVseststhvgsssEVFTDRLEEIGKFggsgsakvngSSVSGGVFDDLDSLNILgksvppvspeinkrgndrslrsksvsgtqthprkesidrssveNFDGYAQNNTPVDNFQGSNDTLFNMPSVATdssrsagratsppsymsaTDSLRSAGRATSPPSYMSATDSLRSAGRATSPPsytsaspsetnsqvnTTPKSEDLFDSAEDVWLTVSEIPLftqptsapppsrpppprpTRVSKLETGNARKKaneyssfsnspqcthspkstragtrsSAASQIDELEDFAMSRSWNNVNEYGEVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAkemreresfkaarsresvqpdreeratqqdaqerldremqqrekgeeqrrlerererereekerekkriekekerareiekerekarqaveRATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAAranqnqqkndndLESFFSMSsrpssaprprantsdslfdsqskggpeparrtsvgassnmrkassttniVDDLSSIFGAAgssagefqdvegetEERRRARLERHQRTQERAAKalaeknerdlqaqrDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEELF
Low Complexity Region (SEG)
MpvydkpvydddvdIFKGLPGLRTsstpaaaasssgaNFDDVFASFSRSSAKHESARESSPLDDLLGNLGKKETESRVKSEKDVSAFDDLLPGFGRsrspssnrstsessqsqkppsnstkTASSVMEDPFgvseststhvgssseVFTDRLEEIGKFGGSGSAKVNGSSVSGGVFDDLDSLNILGKSVPPVSPEINKRGNDRSLRSKSVSGTQTHPRKESIDRSSVENFDGYAQNNTPVDNFQGSNDTLFNMPSVATDSSRSAGRATSPPSYMSATDSLRSAGRATSPPSYMSATDSLRSAGRatsppsytsaspsETNSQVNTTPKSEDLFDSAEDVWLTVSEIPLFTQptsapppsrpppprptrVSKLETGNARKKANEYSSFSNSPQCTHSPKstragtrssaasQIDELEDFAMSRSWNNVNEYGEVPSPEDVESSIaaasaaamkeamdraeakFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDremqqrekgeeqrrlerererereekerekkriekekerareiekerekarqaveratreareraaaearlkaeraavdkanaaareraeraavqraqaeareraaaeareraeraaaeareranaearekeareraSVarteaealqraeraavqraaseareraaaeareraaaaaraNQNQQKNDNDLEsffsmssrpssaprpraNTSDSLFDSQSKGGPEPARRTSVGASSNMRKASSTTNIVDDLssifgaagssagEFQDVegeteerrrarlerHQRTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEELF
Disordered region (IsUnstruct)
********YDDDVDIFK*******************************************************************************************************************************************************************************************************************************************************************************************************************************EDVWLTVSEIPLF*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************IAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKF******
Disordered Region (DISOPRED)
MPVYDKPVYDDDVDIFKG**********************D**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************GNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEELF
Disordered Region (DISEMBL)
MPVYDKPVYDDDVDIFKGLPGLRT***********GANFDDVFASF****************DDLLGNLGK***********DVSAFDDLLPGFGR******************************MEDPFG**************VFTDRLEEIGKFGGSGSAKVNGSSVSGGVFDDLDSLNILGKSVPPVSPEIN***************************SSVENFDGYAQNNTPVDNFQGSNDTLFNMPSV***********************************************************************KSEDLFDSAEDVWLTVSEIPLFTQ******************SKLE************************************SQIDELEDFAMSRSWNNVNEYGEVPSPEDVESSI*****************KFRH******************************************************************************************************************************************************************************************************************************KNDNDLESFFS***********************************************TTNIVDDLSSIFGAAGS**************************************************RHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEELF
Disordered Region (DISPRO)
*PVYDKPVYDDDVDIFKGLPG**********************************************************************************************************EDPFGVS**************************************************L******************************************************************************************************************************************************AEDVWLTVSEIPLFTQPTSAPPPSRPP*******************************************************FAMSR******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************ERAAKALAEKNERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNS****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPVYDKPVYDDDVDIFKGLPGLRTSSTPAAAASSSGANFDDVFASFSRSSAKHESARESSPLDDLLGNLGKKETESRVKSEKDVSAFDDLLPGFGRSRSPSSNRSTSESSQSQKPPSNSTKTASSVMEDPFGVSESTSTHVGSSSEVFTDRLEEIGKFGGSGSAKVNGSSVSGGVFDDLDSLNILGKSVPPVSPEINKRGNDRSLRSKSVSGTQTHPRKESIDRSSVENFDGYAQNNTPVDNFQGSNDTLFNMPSVATDSSRSAGRATSPPSYMSATDSLRSAGRATSPPSYMSATDSLRSAGRATSPPSYTSASPSETNSQVNTTPKSEDLFDSAEDVWLTVSEIPLFTQPTSAPPPSRPPPPRPTRVSKLETGNARKKANEYSSFSNSPQCTHSPKSTRAGTRSSAASQIDELEDFAMSRSWNNVNEYGEVPSPEDVESSIAAASxxxxxxxxxxxxxxxxxxxxxRERESFKAARSRESVQPDREERATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxERAAVQRAASEARERAxxxxxxxxxxxxxxxxxxxxxDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPARRTSVGASSNMRKASSTTNIVDDLSSIFGAAGSSAGEFQDVEGETEERRRARxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEELF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	914	2.2.26 [Sep-21-2011]
Q0WQ57	891	Auxilin-related protein 2	yes	no	0.838	0.859	0.471	1e-157
Q9SU08	904	Auxilin-related protein 1	no	no	0.248	0.251	0.774	8e-95
O13773	697	UBA domain-containing pro	yes	no	0.113	0.149	0.409	7e-18
Q27974	910	Putative tyrosine-protein	yes	no	0.155	0.156	0.371	3e-16
O75061	913	Putative tyrosine-protein	yes	no	0.118	0.118	0.415	8e-16
Q80TZ3	938	Putative tyrosine-protein	yes	no	0.118	0.115	0.406	2e-15
O14976	1311	Cyclin-G-associated kinas	no	no	0.123	0.086	0.377	5e-15
Q99KY4	1305	Cyclin-G-associated kinas	no	no	0.123	0.086	0.377	7e-15
P97874	1305	Cyclin-G-associated kinas	no	no	0.123	0.086	0.370	1e-14
Q8IDX6	3130	Reticulocyte-binding prot	yes	no	0.142	0.041	0.328	2e-09

>sp|Q0WQ57|AUXI2_ARATH Auxilin-related protein 2 OS=Arabidopsis thaliana GN=At4g12770 PE=1 SV=1

 Score =  557 bits (1435), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 438/929 (47%), Positives = 539/929 (58%), Gaps = 163/929 (17%)

Query: 1   MPVYDKPVYDDDVDIFKGLPGLRTSSTPAAAASSSGANFDDVFASFSRSSAKHESARESS 60
           MPVYDKPVYDD+ D+F+ +P L+  ST     SS  A F++VF+S S S  KH   + SS
Sbjct: 111 MPVYDKPVYDDE-DVFESIPELKIPST-----SSQSARFENVFSSISSSPTKHRK-QNSS 163

Query: 61  PLDDLLGN-LGKKETESRVKSEKDVSAFDDLLPGFGRSRSPSSNRSTSES-SQSQKPPSN 118
           P DDL+GN LGKKE++   + EK  S FDDL+PGFGR+ SP + R+TSE+ SQSQKPP  
Sbjct: 164 PFDDLMGNNLGKKESD---REEKGSSIFDDLIPGFGRTSSPPAKRTTSETTSQSQKPPYR 220

Query: 119 STKTASSVMEDPFGVSESTSTHVGSSSEVFTDRLEEIGKFGGSGSAKVNGSSVSGGVFDD 178
           + +T+S+V EDPF V E +++ +   S                          +GG  D 
Sbjct: 221 TAETSSNVKEDPFVVLEESTSTLREPS--------------------------TGGFTDP 254

Query: 179 LDSLNILGKSVPPVSPEINKRGNDRSLRSKSVSGTQTHPRKESIDRSSVENFDGYAQNNT 238
           L+ +   GK         N R  D S    SV G                   G   +  
Sbjct: 255 LEEI---GK--------FNSRKTDHS----SVHG-------------------GVFVDTD 280

Query: 239 PVDNFQGSNDTLFNMPSVATDSSRSAGRA-TSPPSYMSATDS-LRSAGRATSPPSYMSAT 296
           P+D+   S   +            S G++   PP  +S + S + S+G   S    +S  
Sbjct: 281 PLDSLGKSGPDM-----------NSRGKSHLRPPGNISGSQSPVESSGLYHS--KNVSFD 327

Query: 297 DSLRSAGRATSPPSYTSASPSETNSQVNTTPKSEDLFDSAEDVWLTVSEIPLFTQPTSAP 356
           D +     +T PP+ +  S                 F+S++DVWLTVSEIPLFTQPTSAP
Sbjct: 328 DVVEPQNTSTPPPTNSDGS-----------------FESSDDVWLTVSEIPLFTQPTSAP 370

Query: 357 PPSRPPPPRPTRVSKLETGNARKKANEYSSFSNSPQCTHSPKSTRAGTRSSAASQIDELE 416
           PP+              T   +KK NE  S   S   +H P S RA   S  ASQ+DEL+
Sbjct: 371 PPT-------RPPPPRPTRPIKKKVNE-PSIPTSAYHSHVPSSGRASVNSPTASQMDELD 422

Query: 417 DFAMSRSWNNVNEYGEVPSPEDVES-SIAAASAAAMKEAMDRAEAKFRHAKEMRERESFK 475
           DF++ R+    N Y +  S ED +  S AAASAAAMK+AMD+AEAKFRHAKE RE+ES K
Sbjct: 423 DFSIGRNQTAANGYPDPSSGEDSDVFSTAAASAAAMKDAMDKAEAKFRHAKERREKESLK 482

Query: 476 AARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIE 535
           A+RSRE             D  E  D   ++RE  E+Q RL+RER     E E+ + R  
Sbjct: 483 ASRSREG------------DHTENYDS--RERELREKQVRLDRERAEREAEMEKTQARER 528

Query: 536 KEKERAREIEKEREK---ARQAVERATREARERAAAEARLKAERAAVDKANAAARERAER 592
           +E+ER ++  +   +   ARQAVERATREARE           RAA +     A  + +R
Sbjct: 529 EEREREQKRIERERERLLARQAVERATREARE-----------RAATE-----AHAKVQR 572

Query: 593 AAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRA- 651
           AAV +           +ARERAERAA +       E     ARE+A  A  EA     A 
Sbjct: 573 AAVGKV---------TDARERAERAAVQRAHAEARERAAAGAREKAEKAAAEARERANAE 623

Query: 652 --ERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSRPSSAPRPR 709
             E+ A +  A  A    AA      AAA    + QQ+N+NDL+SFF+  SRPSS PR R
Sbjct: 624 VREKEA-KVRAERAAVERAAAEARGRAAAQAKAKQQQENNNDLDSFFNSVSRPSSVPRQR 682

Query: 710 ANTSDSLFDSQSKGG----PEPARRTSVGASSNMRKASSTTNIVDDLSSIFGAAGSSAGE 765
            N  D   DS +KGG      P+ R   G + N+RKASS TNIVDDLSSIFGA  S +G 
Sbjct: 683 TNPPDPFQDSWNKGGSFESSRPSSRVPSGPTENLRKASSATNIVDDLSSIFGAPASQSGG 742

Query: 766 FQDVEGETEERRRARLERHQRTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEIKR 825
           FQDV+GETEERRRARLERHQRTQERAAKALAEKNERDLQ QR+QAE+ RI  TLDVEI+R
Sbjct: 743 FQDVDGETEERRRARLERHQRTQERAAKALAEKNERDLQVQREQAEKDRIGGTLDVEIRR 802

Query: 826 WAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKG 885
           W AGKEGN+RALL+T+QYVLWPE GWQPVSLTDLIT A+VKK YRKATLCIHPDKVQQKG
Sbjct: 803 WGAGKEGNLRALLSTLQYVLWPECGWQPVSLTDLITGASVKKVYRKATLCIHPDKVQQKG 862

Query: 886 ANLQQKYIAEKVFDLLKEAWNKFNSEELF 914
           ANLQQKYIAEKVFD+LKEAWNKFNSEELF
Sbjct: 863 ANLQQKYIAEKVFDMLKEAWNKFNSEELF 891

Promotes probably uncoating of clathrin-coated vesicles.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SU08|AUXI1_ARATH Auxilin-related protein 1 OS=Arabidopsis thaliana GN=At4g12780 PE=1 SV=2

 Score =  348 bits (894), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 179/231 (77%), Positives = 195/231 (84%), Gaps = 4/231 (1%)

Query: 688 NDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPARRTSV----GASSNMRKAS 743
           N NDL+SFFS  SRP+SAPR R N  D   DS +KGG   + R S+    G   N+RK S
Sbjct: 674 NTNDLDSFFSSISRPNSAPRQRTNPLDPFQDSWNKGGSFESSRESLRVPPGQPENLRKTS 733

Query: 744 STTNIVDDLSSIFGAAGSSAGEFQDVEGETEERRRARLERHQRTQERAAKALAEKNERDL 803
           S TNIVDDLSSIFGA+ S +G FQDV+GETEERRRARLERHQRTQERAAKALAEKNERDL
Sbjct: 734 SVTNIVDDLSSIFGASASQSGGFQDVDGETEERRRARLERHQRTQERAAKALAEKNERDL 793

Query: 804 QAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAA 863
           Q QR+Q E+ RI  TLDVEIKRW AGKEGN+RALL+T+QYVLWPE GWQPVSLTDLITAA
Sbjct: 794 QVQREQVEKDRIGVTLDVEIKRWGAGKEGNLRALLSTLQYVLWPECGWQPVSLTDLITAA 853

Query: 864 AVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEELF 914
           +VKK YRKATLCIHPDKVQQKGANLQQKYIAEKVFD+LKEAWNKFNSEELF
Sbjct: 854 SVKKVYRKATLCIHPDKVQQKGANLQQKYIAEKVFDMLKEAWNKFNSEELF 904

Promotes probably uncoating of clathrin-coated vesicles.

Arabidopsis thaliana (taxid: 3702)

>sp|O13773|UCP7_SCHPO UBA domain-containing protein 7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ucp7 PE=4 SV=1

 Score = 93.6 bits (231), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 65/105 (61%), Gaps = 1/105 (0%)

Query: 804 QAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAA 863
           +A++   ER R+ E +   + +W  GKE N+RALLA++  +LWPE  WQ VSL++L+   
Sbjct: 588 KAEQLDEERSRLREPVQQIVNKWKEGKESNLRALLASLDTILWPECRWQKVSLSELVLPK 647

Query: 864 AVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKF 908
            VK  Y KA   +HPDK+ Q+ + ++ + IAE  F +L  AW  F
Sbjct: 648 KVKIAYMKAVSRVHPDKLPQQTS-VEHQLIAESAFSILNHAWELF 691

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q27974|AUXI_BOVIN Putative tyrosine-protein phosphatase auxilin OS=Bos taurus GN=DNAJC6 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 83/156 (53%), Gaps = 14/156 (8%)

Query: 766 FQDVEGETEERRRA--RLERHQRTQ--ERAAKALAEKNERDLQAQRDQAERHR--IAETL 819
           F  + G   ER +A   LE  Q+    E           +D +  R  AE  +  +A+ +
Sbjct: 753 FSSMPGGQNERGKAAANLEGKQKAADFEDLLSGQGFNAHKDKKGPRTIAEMRKEEMAKEM 812

Query: 820 D---VEIKRWAAGKEGNIRALLATMQYVLWP-ESGWQPVSLTDLITAAAVKKCYRKATLC 875
           D   ++I  W  GKE NIRALL+TM  VLW  E+ W+PV + DL+T   VKK YRKA L 
Sbjct: 813 DPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLV 872

Query: 876 IHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911
           +HPDK    G   +Q   A+ +F  L +AW++F ++
Sbjct: 873 VHPDKA--TGQPYEQ--YAKMIFMELNDAWSEFENQ 904

Recruits HSPA8/HSC70 to clathrin-coated vesicles and promotes uncoating of clathrin-coated vesicles.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|O75061|AUXI_HUMAN Putative tyrosine-protein phosphatase auxilin OS=Homo sapiens GN=DNAJC6 PE=1 SV=3

 Score = 86.7 bits (213), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 71/118 (60%), Gaps = 10/118 (8%)

Query: 800 ERDLQAQRDQAERHR--IAETLD---VEIKRWAAGKEGNIRALLATMQYVLWP-ESGWQP 853
            +D +  R  AE  +  +A+ +D   ++I  W  GKE NIRALL+TM  VLW  E+ W+P
Sbjct: 794 HKDKKGPRTIAEMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKP 853

Query: 854 VSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911
           V + DL+T   VKK YRKA L +HPDK    G   +Q   A+ +F  L +AW++F ++
Sbjct: 854 VGMADLVTPEQVKKVYRKAVLVVHPDKA--TGQPYEQ--YAKMIFMELNDAWSEFENQ 907

Recruits HSPA8/HSC70 to clathrin-coated vesicles and promotes uncoating of clathrin-coated vesicles.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|Q80TZ3|AUXI_MOUSE Putative tyrosine-protein phosphatase auxilin OS=Mus musculus GN=Dnajc6 PE=2 SV=2

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/118 (40%), Positives = 71/118 (60%), Gaps = 10/118 (8%)

Query: 800 ERDLQAQRDQAERHR--IAETLD---VEIKRWAAGKEGNIRALLATMQYVLWP-ESGWQP 853
            +D +  R  AE  +  +A+ +D   ++I  W  GKE NIRALL+TM  VLW  E+ W+P
Sbjct: 819 HKDKKGPRTIAEMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKP 878

Query: 854 VSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911
           V + DL+T   VKK YR+A L +HPDK    G   +Q   A+ +F  L +AW++F ++
Sbjct: 879 VGMADLVTPEQVKKVYRRAVLVVHPDKA--TGQPYEQ--YAKMIFMELNDAWSEFENQ 932

Recruits HSPA8/HSC70 to clathrin-coated vesicles and promotes uncoating of clathrin-coated vesicles.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|O14976|GAK_HUMAN Cyclin-G-associated kinase OS=Homo sapiens GN=GAK PE=1 SV=2

 Score = 84.0 bits (206), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 14/127 (11%)

Query: 786  RTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVL 845
            R+ ++  K +AE  ++DL    D          L +++  W  GKE NIRALL+T+  VL
Sbjct: 1192 RSDKKGPKTIAEMRKQDLAKDTD---------PLKLKLLDWIEGKERNIRALLSTLHTVL 1242

Query: 846  W-PESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEA 904
            W  ES W PV + DL+    VKK YR+A L +HPDK    G   +Q   A+ +F  L +A
Sbjct: 1243 WDGESRWTPVGMADLVAPEQVKKHYRRAVLAVHPDKA--AGQPYEQH--AKMIFMELNDA 1298

Query: 905  WNKFNSE 911
            W++F ++
Sbjct: 1299 WSEFENQ 1305

Associates with cyclin G and CDK5. Seems to act as an auxilin homolog that is involved in the uncoating of clathrin-coated vesicles by Hsc70 in non-neuronal cells. Expression oscillates slightly during the cell cycle, peaking at G1.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q99KY4|GAK_MOUSE Cyclin-G-associated kinase OS=Mus musculus GN=Gak PE=1 SV=2

 Score = 83.6 bits (205), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 14/127 (11%)

Query: 786  RTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVL 845
            ++ ++  K +AE  +++L          R  + L +++  W  GKE NIRALL+T+  VL
Sbjct: 1186 KSDKKGPKTMAEMRKQELA---------RDTDPLKLKLLDWIEGKERNIRALLSTLHTVL 1236

Query: 846  W-PESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEA 904
            W  ES W PVS+ DL+T   VKK YR+A L +HPDK    G   +Q   A+ +F  L +A
Sbjct: 1237 WDGESRWTPVSMADLVTPEQVKKQYRRAVLVVHPDKA--TGQPYEQ--YAKMIFMELNDA 1292

Query: 905  WNKFNSE 911
            W++F ++
Sbjct: 1293 WSEFENQ 1299

Associates with cyclin G and CDK5. Seems to act as an auxilin homolog that is involved in the uncoating of clathrin-coated vesicles by Hsc70 in non-neuronal cells. Expression oscillates slightly during the cell cycle, peaking at G1.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P97874|GAK_RAT Cyclin-G-associated kinase OS=Rattus norvegicus GN=Gak PE=2 SV=1

 Score = 82.4 bits (202), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 73/127 (57%), Gaps = 14/127 (11%)

Query: 786  RTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVL 845
            ++ ++  K +AE  +++L          R  +   +++  W  GKE NIRALL+T+  VL
Sbjct: 1186 KSDKKGPKTMAEMRKQELA---------RDTDPFKLKLLDWIEGKERNIRALLSTLHTVL 1236

Query: 846  W-PESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEA 904
            W  ES W PVS+ DL+T   VKK YR+A L +HPDK    G   +Q   A+ +F  L +A
Sbjct: 1237 WDGESRWTPVSMADLVTPEQVKKQYRRAVLVVHPDKA--TGQPYEQS--AKMIFMELNDA 1292

Query: 905  WNKFNSE 911
            W++F ++
Sbjct: 1293 WSEFENQ 1299

Associates with cyclin G and CDK5. Seems to act as an auxilin homolog that is involved in the uncoating of clathrin-coated vesicles by Hsc70 in non-neuronal cells. Expression oscillates slightly during the cell cycle, peaking at G1.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum (isolate 3D7) GN=PF13_0198 PE=3 SV=1

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/149 (32%), Positives = 80/149 (53%), Gaps = 19/149 (12%)

Query: 476  AARSRESVQPDREERATQQDAQERLDREMQ-QREKGEEQRRLERER----------ERER 524
            A + +E  +  +EE   +Q+ QERL+RE Q Q +K EE +R E+ER          E+ER
Sbjct: 2738 ALKRQEQERLQKEEELKRQE-QERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQER 2796

Query: 525  EEKEREKKRIEK---EKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDK 581
             +KE E KR E+   E+E+  +++KE E  RQ  ER  +E   +   + RL+ E    ++
Sbjct: 2797 LQKEEELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKE----EE 2852

Query: 582  ANAAARERAERAAVQRAQAEARERAAAEA 610
                 +ER ER  ++ A+ E   ++  E+
Sbjct: 2853 LKRQEQERLERKKIELAEREQHIKSKLES 2881

Involved in reticulocyte adhesion.

Plasmodium falciparum (isolate 3D7) (taxid: 36329)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	914
225438408	949	PREDICTED: auxilin-related protein 2-lik	0.921	0.887	0.613	0.0
255567186	983	auxilin, putative [Ricinus communis] gi|	0.925	0.860	0.590	0.0
356512862	985	PREDICTED: auxilin-related protein 2-lik	0.889	0.825	0.557	0.0
356527526	935	PREDICTED: auxilin-related protein 2-lik	0.888	0.868	0.555	0.0
356516393	922	PREDICTED: auxilin-related protein 2-lik	0.901	0.893	0.527	1e-170
297790814	890	hypothetical protein ARALYDRAFT_497125 [	0.833	0.856	0.486	1e-164
147777401	977	hypothetical protein VITISV_018382 [Viti	0.859	0.804	0.539	1e-161
145340151	891	auxilin-related protein 2 [Arabidopsis t	0.838	0.859	0.471	1e-155
334186464	889	auxilin-related protein 2 [Arabidopsis t	0.834	0.858	0.473	1e-154
449457349	974	PREDICTED: auxilin-related protein 1-lik	0.882	0.828	0.467	1e-152

>gi|225438408|ref|XP_002275766.1| PREDICTED: auxilin-related protein 2-like [Vitis vinifera]

 Score =  783 bits (2022), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 575/938 (61%), Positives = 674/938 (71%), Gaps = 96/938 (10%)

Query: 2   PVYDKPVYDDDVDIFKGLPGLRTSSTPAAAASSSGANFDDVFASFSRSSAKHESARESSP 61
           PVYDKPVYDDD  IF G+PGL+TS +          N+D  F++ S S  K   A     
Sbjct: 83  PVYDKPVYDDD--IFDGVPGLKTSGS---------VNYD-AFSTVSGSKQKQNDA----- 125

Query: 62  LDDLLGNLGKKETE-SRVKSEKDV-SAFDDLLPGFGRSRSPSSNRSTSESSQSQKPPSNS 119
            DDLLG  G+K+ E  R  + +DV S FDDLL GFGR  SP SNR T++ + + K   N+
Sbjct: 126 FDDLLGGFGRKDPEPKRSGNVEDVGSGFDDLLHGFGRI-SPPSNRPTTDINWAPKSTVNA 184

Query: 120 TKTASSVMEDPFGVSESTSTHVGSSSEVFTDRLEEIGKFGGSGSAKVNGSS-VSGGVFDD 178
           T+T S+V+EDPF V ESTST   SSS +F+D LEEI K   SGS +V+GSS V GG F+D
Sbjct: 185 TETTSNVIEDPFVVLESTSTPAVSSSVLFSDPLEEISKLSNSGSTRVDGSSAVGGGAFND 244

Query: 179 LDSLNILGKSVPPVSPEINKRGNDRSLRS-KSVSGTQTHPRKESIDRSSVENFDGYAQNN 237
           LD L+ LGKS  P   E+NKRG +RS  S +  S TQT   KE I++SSVE  D ++Q  
Sbjct: 245 LDPLDGLGKSAFP--SEMNKRGKNRSPSSTEPTSETQTFATKEPIEKSSVEGQDSHSQKK 302

Query: 238 TPVDNFQGSNDTLFNMPSVATDSSRSAGRATSPPSYMSATDSLRSAGRATSPPSYMSATD 297
            P +N+  S+ TLF++P+V+TDS +                                   
Sbjct: 303 MPAENYWESHQTLFDIPTVSTDSHK----------------------------------- 327

Query: 298 SLRSAGRATSPPSYTSASPSETNSQVNTTPKSEDLFDSAEDVWLTVSEIPLFTQPTSAPP 357
              S  +  SPPS+ +ASP+ETNSQ   +P+SE+   S++DVWL VS+IPLFTQPTSAPP
Sbjct: 328 ---SFSQTPSPPSHVNASPNETNSQGEMSPRSEENLSSSDDVWLAVSDIPLFTQPTSAPP 384

Query: 358 PSRPPPPRPTRVSKLETG-----NARKKANEYSSFSNSPQCTHSPKSTRAGTRSSAASQI 412
           PSRPPP RPT+VS+ ETG     NARKK NE+SSF+NS Q + SPK TR   +SSA SQI
Sbjct: 385 PSRPPPTRPTQVSRAETGSFGSNNARKKVNEFSSFTNSSQYSQSPKLTRGTVKSSAVSQI 444

Query: 413 DELEDFAMSRSWNNVNEYGEVPSPEDVES-SIAAASAAAMKEAMDRAEAKFRHAKEMRER 471
           DELEDFAM R+ NNV+ + E    ++ E+ S+AAASAAAMKEAMDRAEAKFRHAK +RER
Sbjct: 445 DELEDFAMGRTQNNVDGHAEGLYGDEFETNSVAAASAAAMKEAMDRAEAKFRHAKGVRER 504

Query: 472 ESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREK 531
           ES KA+RS+E+ Q DR+E+A  QDAQER  RE Q+R + E Q R   E ERE+   ER +
Sbjct: 505 ESAKASRSKEAGQLDRDEKA-MQDAQERAIREKQERLEHERQEREREEEEREQRRLERTR 563

Query: 532 KRIEKEKERAREIEKEREKAR-------------QAVERATREARERAAAEARLKAERAA 578
           +   + +E+ RE  +  ++               QAVERAT+EARERAAAEARLKAERAA
Sbjct: 564 EIEREREEKEREQRRLEKERERAREIEREREKARQAVERATKEARERAAAEARLKAERAA 623

Query: 579 VDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERA 638
           V K NA ARERAERAAV RAQAEARERAAAEA+ERAE+AAAEARERAN EAREKEARERA
Sbjct: 624 VGKVNAEARERAERAAVHRAQAEARERAAAEAKERAEKAAAEARERANTEAREKEARERA 683

Query: 639 SVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSM 698
           +VAR EAE   R          +E      A A  R  AAA A  NQQKN+NDLESFFSM
Sbjct: 684 AVARAEAEVRLR----------TERAAVERAAAEARERAAAAARVNQQKNENDLESFFSM 733

Query: 699 SSRPSSAPRPRANTSDSLFDSQSKG--GPEPARRTSVGASSNMRKASSTTNIVDDLSSIF 756
            SRPSSAPRPRAN+SD +FD+Q +   GPE AR T+  ASS MRKASSTTNIVDDLSSIF
Sbjct: 734 GSRPSSAPRPRANSSDPVFDTQFQNRRGPEVAR-TAASASSTMRKASSTTNIVDDLSSIF 792

Query: 757 GAAGSSAGEFQDVEGETEERRRARLERHQRTQERAAKALAEKNERDLQAQRDQAERHRIA 816
           GAA SS G+FQDVEGE+E+RRRARLERHQRTQERAAKALAEKN+RDLQAQRDQAERHRIA
Sbjct: 793 GAAPSS-GDFQDVEGESEDRRRARLERHQRTQERAAKALAEKNQRDLQAQRDQAERHRIA 851

Query: 817 ETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCI 876
           ETLDVEIKRW+AGKEGN+RALL+T+QYVLWPE GWQPVSLTDLITAA+VKK YRKATLCI
Sbjct: 852 ETLDVEIKRWSAGKEGNLRALLSTLQYVLWPECGWQPVSLTDLITAASVKKVYRKATLCI 911

Query: 877 HPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEELF 914
           HPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEELF
Sbjct: 912 HPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEELF 949

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567186|ref|XP_002524574.1| auxilin, putative [Ricinus communis] gi|223536127|gb|EEF37782.1| auxilin, putative [Ricinus communis]

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/949 (59%), Positives = 675/949 (71%), Gaps = 103/949 (10%)

Query: 1   MPVYDKPVYDDDVDIFKGLPGLR-TSSTPAAAASSSGANFDDVFASFSRSSAKHESARES 59
           +PV+DKPVYDDD DIF GLPGL+ TS TP      + +NFDDVF S   ++    S  ++
Sbjct: 103 LPVFDKPVYDDDDDIFDGLPGLKSTSVTP------NSSNFDDVFGSIGTTTTTATSPPKT 156

Query: 60  ----------SPLDDLLGNLGKKETESRVKS----EKDVSAFDDLLPGFGRSRSPSSNRS 105
                     SP DDLLGN GK ETES+ ++    EKD + FDDLLPGFGRS SPS  RS
Sbjct: 157 RSLNNNTSSSSPFDDLLGNFGKLETESKRETTPEVEKDSAMFDDLLPGFGRSSSPSIARS 216

Query: 106 TSESSQSQKPPSNSTKTASSVMEDPFGVSESTSTHVGSSSEVFTDRLEEIGKFGGSGSAK 165
           TSES+++QK  +NS KTAS++MEDPF + +STST   SSS ++TD L+EI KF  +GS K
Sbjct: 217 TSESTRAQKSSTNSVKTASNMMEDPFVILQSTSTPAASSSGLYTDPLDEISKFRSTGSTK 276

Query: 166 VNGSSVSGGVFDDLDSLNILGKSVPPVSPEINKRGNDRS-LRSK-SVSGTQTHPRKESID 223
           V+ SSV+ G+FDD+DS + LGKSVPPVS  INKRG DRS LR+  S  G  +    ES+D
Sbjct: 277 VDSSSVNRGIFDDIDSFDNLGKSVPPVSSGINKRGKDRSPLRTGPSTGGNFSAASNESVD 336

Query: 224 RSSVENFDGYAQNNTPVDNFQGSNDTLFNMPSVATDSSRSAGRATSPPSYMSATDSLRSA 283
           +  V+     +Q     D+FQ  ++TLF+MP+  TD  RS                    
Sbjct: 337 KYPVDEAAAPSQKKMSNDDFQEYHETLFDMPNATTDFHRSV------------------- 377

Query: 284 GRATSPPSYMSATDSLRSAGRATSPPSYTSASPSETNSQVNTTPKSEDLFDSAEDVWLTV 343
                              G+  S PSY +ASP+ETNS     P+ ED+ +S+ D+WLTV
Sbjct: 378 -------------------GQNVSSPSYVNASPNETNS----PPRYEDISESSNDIWLTV 414

Query: 344 SEIPLFTQPTSAPPPSRPPPPRPTRVSKLETG-----NARKKANEYSSFSNSPQCTHSPK 398
           SE+PLFT PTSAPPPSRPPPPRP R+SK +TG     N+RKK NEYS FSNS   + SP+
Sbjct: 415 SEVPLFTAPTSAPPPSRPPPPRPPRISKTDTGSFSSTNSRKKVNEYS-FSNSASYSQSPR 473

Query: 399 STRAGTRSSAASQIDELEDFAMSRSWNNVNEYGEVPSPEDVESSIAAASAAA--MKEAMD 456
           S RAG RS   +QI+ELEDFAM R+  N +E+ +V   ED++++ ++A+A+A  MKEAMD
Sbjct: 474 SARAG-RSMVPTQIEELEDFAMGRTPTNASEHADVVYGEDMDANASSAAASAAAMKEAMD 532

Query: 457 RAEAKFRHAKE------MRERESFKAARSRESVQP----DREERATQQDAQERLDREMQQ 506
           +AEAKF+  +E       R RE  +  +  +  QP    +R+ER  ++  Q   + + ++
Sbjct: 533 KAEAKFKQMREREYLKAARSREGGQLDKDMQEAQPRELRERQERLDRERLQREREEQERE 592

Query: 507 REKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERA 566
           + + E++R    E EREREEKERE++R+E+E+ERAREIE+EREKARQAVERATREARERA
Sbjct: 593 QRRLEKERERAHEIEREREEKEREQRRLERERERAREIEREREKARQAVERATREARERA 652

Query: 567 AAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERAN 626
           AA+ARLKAERAAV+KA+A ARERAERAAVQRAQAEARERAAAEARERAERAAAEARERAN
Sbjct: 653 AADARLKAERAAVEKASAEARERAERAAVQRAQAEARERAAAEARERAERAAAEARERAN 712

Query: 627 AEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQ 686
            E+RE+ A  RA     +                        A A  R  AAA A  NQQ
Sbjct: 713 TESRERAAVARAEADARQRAE---------------RAAVERAAAEARERAAAAARANQQ 757

Query: 687 KNDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPARRTSVGASSNMRKASSTT 746
           KN+ND ESFF+   R SSAPRPR NTS+  FD+Q+KGG E ARRTSVG + NM+KASSTT
Sbjct: 758 KNENDFESFFN--PRASSAPRPR-NTSEPFFDTQTKGGSEAARRTSVGTTPNMKKASSTT 814

Query: 747 NIVDDLSSIFGA-AGSSAGEFQDVEGETEERRRARLERHQRTQERAAKALAEKNERDLQA 805
           NIVDDLSSIFG  A  ++G+FQ+VEGETEERRRARLERHQRTQERAAKALAEKN+RDLQA
Sbjct: 815 NIVDDLSSIFGGTATGTSGDFQEVEGETEERRRARLERHQRTQERAAKALAEKNQRDLQA 874

Query: 806 QRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAV 865
           QR+QAERHRIAETLDVEIKRWAAGKEGN+RALL+T+QYVLWPE GWQPVSLTDLIT AAV
Sbjct: 875 QREQAERHRIAETLDVEIKRWAAGKEGNLRALLSTLQYVLWPECGWQPVSLTDLITGAAV 934

Query: 866 KKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEELF 914
           KK YRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEELF
Sbjct: 935 KKVYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEELF 983

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512862|ref|XP_003525134.1| PREDICTED: auxilin-related protein 2-like [Glycine max]

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/931 (55%), Positives = 620/931 (66%), Gaps = 118/931 (12%)

Query: 2   PVYDKPVYDDDVDIFKGLPGLRTSSTPAAAASSSGANFDDVFASFSRSSAKHESARESSP 61
           PVYDKPVYDDD  IF G+PGL+         S+S   FDDVFA+ +      ES   ++ 
Sbjct: 155 PVYDKPVYDDD--IFDGVPGLK---------STSKVKFDDVFATTA------ESGGGAAA 197

Query: 62  LDDLLGNLGKK----ETESRVKSEKDVSAFDDLLPGFGRSRSPSSNRSTSESSQSQKPPS 117
            DDLLG  GK+    + +   K EK VS FDDLL GFG SRS S  R T +   S +P +
Sbjct: 198 FDDLLGGFGKESKSLDGKRSEKDEKGVSDFDDLLAGFGHSRSSSGGRHTPDIGLSSEPTA 257

Query: 118 NSTKTASSVMEDPFGVSESTSTHVGSSSEVFTDRLEEIGKFGGSGSAKVNGSSVSGG-VF 176
           +++KT  +  EDPF V ES S  V SS+  F + LEEI KF  SGS K + SS S G V+
Sbjct: 258 SASKTIPTAAEDPFKVFESASAPVDSSAGHFMNPLEEISKFSSSGSTKNDSSSTSNGKVY 317

Query: 177 DDLDSLNILGKSVPPVSPEINKRGNDRSLR---SKSVSGTQTHPRKESIDRSSVENFDGY 233
           +D+D  + LGKSVP  S E N R    S R   S S +G      KE +D+ S  + + +
Sbjct: 318 EDIDPFDGLGKSVPAFSSERNSRKGSSSPRLNTSTSWTGD-----KEPVDKISGRSPERH 372

Query: 234 AQNNTPVDNFQGSNDTLFNMPSVATDSSRSAGRATSPPSYMSATDSLRSAGRATSPPSYM 293
            QN  PV+N Q      F+MP+ ++DS +  G+                           
Sbjct: 373 TQNKIPVENDQEFLHAPFHMPTYSSDSDKPVGQ--------------------------- 405

Query: 294 SATDSLRSAGRATSPPSYTSASPSETNSQVNTTPKSEDLFDSAEDVWLTVSEIPLFTQPT 353
                     R+TSPP Y +    +TN Q + +PK ED  +++ED+WLTVSEIPLFTQPT
Sbjct: 406 ----------RSTSPP-YNNVDFRQTNIQADMSPKYEDNLEASEDIWLTVSEIPLFTQPT 454

Query: 354 SAPPPSRPPPPRPTRVSKLETG-----NARKKANEYSSFSNSPQCTHSPKSTRAGTRSSA 408
           +APPPSRPPPPRP  + K  T      NARKK NE+SSF  S + +  PKS  A  R S 
Sbjct: 455 TAPPPSRPPPPRPVHIPKSGTTSPASTNARKKTNEFSSFPGSTRFSQGPKSAPAAGRVSP 514

Query: 409 ASQIDELEDFAMSRSWNNVNEYGEVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEM 468
           +SQ DEL+DFAM RS  N NE       E++E + AAA   AMKEAMDRAEAKFRHAKE+
Sbjct: 515 SSQFDELDDFAMGRSRGNDNESANGLPDEELEMNSAAA---AMKEAMDRAEAKFRHAKEV 571

Query: 469 RERESFKAARSRESVQPDREERAT--QQDAQERLDREMQQREK-GEEQRRLERERERERE 525
           RERE  KAARS+E+VQ +++ER    +Q+ QER DRE QQ+EK G+EQRRL         
Sbjct: 572 REREYSKAARSKEAVQMEKDERTVLEEQENQERFDRERQQKEKEGKEQRRL--------- 622

Query: 526 EKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAA 585
                    E+E++   +   ERE+ARQAVERATREARERAAAEAR +AERAAV+KANA 
Sbjct: 623 -------MKEREEKEREQQRLERERARQAVERATREARERAAAEARQRAERAAVEKANAE 675

Query: 586 ARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEA 645
           AR RAERAAVQRAQAEARERAAAEA+ERAE+AAAE ++R        E RERA+ AR E 
Sbjct: 676 ARGRAERAAVQRAQAEARERAAAEAKERAEKAAAEVKDR--------ETRERATAARAEV 727

Query: 646 EALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSRPSSA 705
           EA          R  +E      A A  R  AAA A  NQQKN+NDLESFF M +R SS 
Sbjct: 728 EA----------RVKAERAAVERAAAEARERAAAAARMNQQKNENDLESFFGMGARASSV 777

Query: 706 PRP-RANTSDSLFDSQSKGGPEPARRTSVGASSNMRKASSTTNIVDDLSSIFGA-AGSSA 763
           PRP RAN+SD++F+SQ +       R S  AS++M+K SS+TNIVDDLSSIFG  A  ++
Sbjct: 778 PRPPRANSSDNVFESQFQSD---VTRKSTSASTSMKKTSSSTNIVDDLSSIFGGSAAPTS 834

Query: 764 GEFQDVEGETEERRRARLERHQRTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEI 823
           GEFQ+VEGETEERRRARLERHQRT+ERAAKALAEKN+RDLQ QR+QAERHR+AETLD EI
Sbjct: 835 GEFQEVEGETEERRRARLERHQRTKERAAKALAEKNQRDLQTQREQAERHRLAETLDFEI 894

Query: 824 KRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQ 883
           KRWAAGKEGN+RALL+T+QYVLWPE GWQPVSLTDLITAAAVKK YRKATLCIHPDKVQQ
Sbjct: 895 KRWAAGKEGNLRALLSTLQYVLWPECGWQPVSLTDLITAAAVKKAYRKATLCIHPDKVQQ 954

Query: 884 KGANLQQKYIAEKVFDLLKEAWNKFNSEELF 914
           KGANLQQKY+AEKVFDLLKEAWNKFNSEELF
Sbjct: 955 KGANLQQKYVAEKVFDLLKEAWNKFNSEELF 985

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527526|ref|XP_003532360.1| PREDICTED: auxilin-related protein 2-like [Glycine max]

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/931 (55%), Positives = 617/931 (66%), Gaps = 119/931 (12%)

Query: 2   PVYDKPVYDDDVDIFKGLPGLRTSSTPAAAASSSGANFDDVFASFSRSSAKHESARESSP 61
           PVYDKPVYDDD  IF G+PGL+         S+S   FDDVFA+ +      ES R ++ 
Sbjct: 106 PVYDKPVYDDD--IFDGVPGLK---------STSKVKFDDVFATTT------ESGRGAA- 147

Query: 62  LDDLLGNLGKKETESRVK-SEKD---VSAFDDLLPGFGRSRSPSSNRSTSESSQSQKPPS 117
            DDLLG  GK+   S  K SEKD   VS  DDLL GFG SRS S  R T +   S +P +
Sbjct: 148 FDDLLGGFGKESKSSDGKRSEKDGKGVSDLDDLLAGFGHSRSSSGGRHTPDIGLSSEPTA 207

Query: 118 NSTKTASSVMEDPFGVSESTSTHVGSSSEVFTDRLEEIGKFGGSGSAKVNGSSVSGG-VF 176
           +++KT  +  EDPF V ES S  V SS+  F D LEEI KF  S S K + SS S G V+
Sbjct: 208 SASKTTPTSAEDPFKVFESASAPVDSSAGHFMDPLEEISKFSSSRSTKNDSSSTSNGKVY 267

Query: 177 DDLDSLNILGKSVPPVSPEINKRGNDRSLR---SKSVSGTQTHPRKESIDRSSVENFDGY 233
           +D+D  + LGKS P  S E N R    S R   S S +G      KE +D+ S  + + +
Sbjct: 268 EDIDPFDGLGKSAPAFSSERNSRKGSSSPRLNTSTSWTGD-----KEPVDKISGRSPERH 322

Query: 234 AQNNTPVDNFQGSNDTLFNMPSVATDSSRSAGRATSPPSYMSATDSLRSAGRATSPPSYM 293
            QN  PV+N +      F+MP+ ++DS +  G                            
Sbjct: 323 TQNKIPVENDREFPHVPFHMPTYSSDSDKPVGP--------------------------- 355

Query: 294 SATDSLRSAGRATSPPSYTSASPSETNSQVNTTPKSEDLFDSAEDVWLTVSEIPLFTQPT 353
                     R TSPP Y +    +TN Q + +PK ED  + +ED+WLTVSEIPLFTQPT
Sbjct: 356 ----------RPTSPP-YDNVDFRQTNVQADMSPKYEDNLEPSEDIWLTVSEIPLFTQPT 404

Query: 354 SAPPPSRPPPPRPTRVSKLET-----GNARKKANEYSSFSNSPQCTHSPKSTRAGTRSSA 408
           +APPPSRPPPPRP  + K  T      NARKK NE+SSF  S +    PKS  A  R   
Sbjct: 405 TAPPPSRPPPPRPVHIPKSGTSSPASANARKKTNEFSSFPGSTRFAQGPKSAPAAERVPP 464

Query: 409 ASQIDELEDFAMSRSWNNVNE--YGEVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAK 466
           +SQ DEL+DFAM RS  N NE   G +P  E++E + AAA   AMKEAMDRAEAKFRHAK
Sbjct: 465 SSQFDELDDFAMGRSRGNDNESANGFLPD-EELEMNSAAA---AMKEAMDRAEAKFRHAK 520

Query: 467 EMRERESFKAARSRESVQPDREERAT--QQDAQERLDREMQQREKGEEQRRLERERERER 524
           E+RERE  KAARS+E+VQ +++ER    +++ QERLDRE QQ+E               R
Sbjct: 521 EVREREYSKAARSKEAVQMEKDERTVLEERENQERLDRERQQKE---------------R 565

Query: 525 EEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANA 584
           EEKE+ +   E+E++   +   ERE+ARQAVERATREARERAAAEAR +AERAAV+K NA
Sbjct: 566 EEKEQRRLMKEREEKEREQQRLERERARQAVERATREARERAAAEARQRAERAAVEKVNA 625

Query: 585 AARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTE 644
            AR RAERAAVQRAQAEARERAAAEA+ERAE+AAAEA+ER   E       E  +  +  
Sbjct: 626 EARGRAERAAVQRAQAEARERAAAEAKERAEKAAAEAKERETRERATAARAEAEARVK-- 683

Query: 645 AEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSRPSS 704
                 AERA+V+RAA+EAR            AAA A  NQQKN+NDLESFF M +R SS
Sbjct: 684 ------AERASVERAAAEAR----------ERAAAAARMNQQKNENDLESFFGMGARASS 727

Query: 705 APRP-RANTSDSLFDSQSKGGPEPARRTSVGASSNMRKASSTTNIVDDLSSIFGAAGSSA 763
            PRP RAN+SD++F+SQ +       R S  AS++M+KASS+TNIVDDLSSIFG    ++
Sbjct: 728 VPRPPRANSSDNVFESQFQSD---VTRKSTSASTSMKKASSSTNIVDDLSSIFGGTAPTS 784

Query: 764 GEFQDVEGETEERRRARLERHQRTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEI 823
           GEFQ+VEGETEERRRARLERH RT+ERAAKALAEKN+RDLQ QR+QAERHR+AETLD EI
Sbjct: 785 GEFQEVEGETEERRRARLERHHRTKERAAKALAEKNQRDLQTQREQAERHRLAETLDFEI 844

Query: 824 KRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQ 883
           KRWAAGKEGN+RALL+T+QYVLWPE GWQPVSLTDLITAAAVKK YRKATLCIHPDKVQQ
Sbjct: 845 KRWAAGKEGNLRALLSTLQYVLWPECGWQPVSLTDLITAAAVKKAYRKATLCIHPDKVQQ 904

Query: 884 KGANLQQKYIAEKVFDLLKEAWNKFNSEELF 914
           KGANLQQKY+AEKVFDLLKEAWNKFNSEELF
Sbjct: 905 KGANLQQKYVAEKVFDLLKEAWNKFNSEELF 935

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516393|ref|XP_003526879.1| PREDICTED: auxilin-related protein 2-like [Glycine max]

 Score =  606 bits (1563), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 486/922 (52%), Positives = 602/922 (65%), Gaps = 98/922 (10%)

Query: 2   PVYDKPVYDDDVDIFKGLPGLRTSSTPAAAASSSGANFDDVFASFSRSSAKHESARESSP 61
           PV+DKPVYD+D  IF G+PGL+         SSS   +DDV                ++ 
Sbjct: 90  PVFDKPVYDED--IFDGVPGLK---------SSSKVFYDDV---------FASGGSAAAA 129

Query: 62  LDDLLGNLGKKETESRVKSEKDVSAFDDLLPGFGRSRS-PSSNRSTSESSQSQKPPSNST 120
            DDLL  LGK E   +V  EK    FDDL+ GFG S++  S++R+  + + S++P  N++
Sbjct: 130 FDDLLVGLGKSEKSEKV--EKGARDFDDLISGFGSSKAKASTDRTVPDINLSREPTINAS 187

Query: 121 KTASSVMEDPFGVSESTSTHVGSSSEVFTDRLEEIGKFGGSGSAKVNGSSVSGGVFDDLD 180
           KTASS   DPF V ESTS  + SSS+ FTD LEEI KF  S S K + SS S  V++D+D
Sbjct: 188 KTASSAANDPFKVFESTSAPIDSSSDYFTDPLEEISKFTSSRSTKNDSSSNSNEVYNDID 247

Query: 181 SLNILGKSVPPVSPEINKRGNDRSLRSKSVSGTQTHPRKESIDRSSVENFDGYAQNNTPV 240
               LG SVP  S E N      S   +S + +     KES D+SSV + +   QN  PV
Sbjct: 248 PFGGLGNSVPAFSAERNSMKGSNSPTPRSNTSSSWTGDKESNDKSSVRSPERQKQNKIPV 307

Query: 241 DNFQGSNDTLFNMPSVATDSSRSAGRATSPPSYMSATDSLRSAGRATSPPSYMSATDSLR 300
           D+ Q      F+MP  ++DS +   +                                  
Sbjct: 308 DHDQEFLQAAFDMPIYSSDSYKPVDQ---------------------------------- 333

Query: 301 SAGRATSPPSYTSASPSETNSQVNTTPKSEDLFDSAEDVWLTVSEIPLFTQPTSAPPPSR 360
              R+TSP SY +    + + Q + +PK E+  +S +D+WL VSEIPLFTQPT+APPPSR
Sbjct: 334 ---RSTSP-SYDNNGFRQASIQEDMSPKYEEKLESNDDIWLMVSEIPLFTQPTAAPPPSR 389

Query: 361 PPPPRPTRVSKLETG-----NARKKANEYSSFSNSPQCTHSPKSTRAGTRSSAASQIDEL 415
           PPPPRP  + K   G     N RKK NE+S F +S Q +   +S  A  + S+ASQ DEL
Sbjct: 390 PPPPRPVHIPKSGAGSSASANVRKKDNEFSYFPSSSQFSQGSESAPAAAKLSSASQFDEL 449

Query: 416 EDFAMSRSWNNVNEYGEVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFK 475
           EDFAM +S +N +E     + E++E + AAA   AMKEAMDRAEAKFRHAK +RERE+ K
Sbjct: 450 EDFAMGKSHDNDDERINGLADEELEMNSAAA---AMKEAMDRAEAKFRHAKGVRERENTK 506

Query: 476 AARSRESVQPDREERATQQD--AQERLDREMQQREKGEEQRRLEREREREREEKEREKKR 533
           A++S+E VQ +++ RA  +D   QERLD E QQ+E+             E +E+ R +K 
Sbjct: 507 ASKSKEPVQLEKDGRAVSEDRGKQERLDHERQQKER-------------EEKEQRRREKE 553

Query: 534 IEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERA 593
            E+++   + +E+EREKARQAVERATREARERAA EAR +AERAAV+KAN  AR+RAERA
Sbjct: 554 REEKEREQQRLEREREKARQAVERATREARERAAVEARRRAERAAVEKANTEARKRAERA 613

Query: 594 AVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAER 653
           AVQRAQAEARERAA EA+ERAE+A+AEA+ER   E       E  +  + E  A      
Sbjct: 614 AVQRAQAEARERAATEAKERAEKASAEAKEREVRERAAAARAEPEARVKAERAA------ 667

Query: 654 AAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSRPSSAPRPRANTS 713
                  + A  R  A A+ R  AAA A  +QQ+NDNDLESFFS  +R +SAPRP  ++S
Sbjct: 668 ----VERAAAEARERAAAQARERAAAAARMSQQQNDNDLESFFSTGARANSAPRPPRSSS 723

Query: 714 DS-LFDSQSKGGPEPARRTSVGASSNMRKASSTTNIVDDLSSIFGAAGSSAGEFQDVEGE 772
              +FD+Q +       R S G SS+M+KASS+TNIVDDLSSIFGAA SS+GEFQ++EGE
Sbjct: 724 SDSVFDAQFQSD---LTRKSTGVSSSMKKASSSTNIVDDLSSIFGAAPSSSGEFQEIEGE 780

Query: 773 TEERRRARLERHQRTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEIKRWAAGKEG 832
           TEERRRARLERHQRTQERAAKALAEKN+RDLQ QRDQAERHR+AETLD EIKRWAAGKEG
Sbjct: 781 TEERRRARLERHQRTQERAAKALAEKNQRDLQTQRDQAERHRVAETLDFEIKRWAAGKEG 840

Query: 833 NIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKY 892
           N+RALL+T+QYVLWPE GWQPVSLTDLITAAAV+K YRKATLC HPDKVQQKGA +QQKY
Sbjct: 841 NLRALLSTLQYVLWPECGWQPVSLTDLITAAAVRKVYRKATLCTHPDKVQQKGATIQQKY 900

Query: 893 IAEKVFDLLKEAWNKFNSEELF 914
           IAEKVFDLLKEAWNKFNSEELF
Sbjct: 901 IAEKVFDLLKEAWNKFNSEELF 922

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790814|ref|XP_002863292.1| hypothetical protein ARALYDRAFT_497125 [Arabidopsis lyrata subsp. lyrata] gi|297309126|gb|EFH39551.1| hypothetical protein ARALYDRAFT_497125 [Arabidopsis lyrata subsp. lyrata]

 Score =  587 bits (1512), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 453/931 (48%), Positives = 546/931 (58%), Gaps = 169/931 (18%)

Query: 1   MPVYDKPVYDDDVDIFKGLPGLRTSSTPAAAASSSGANFDDVFASFSRSSAKHESARESS 60
           MPVYDKPVYDD+ D+F+ +P L+  ST     SS  A FDDVF+S      KH   + SS
Sbjct: 112 MPVYDKPVYDDE-DVFESIPELKIPST-----SSQSARFDDVFSS----PPKHRK-QNSS 160

Query: 61  PLDDLLGN-LGKKETESRVKSEKDVSAFDDLLPGFGRSRSPSSNRSTSES-SQSQKPPSN 118
           P DDL+GN LGK+ TES  + EK  S FDDL+PGFGR+ SP   R+TSE+ SQSQKPP  
Sbjct: 161 PFDDLMGNNLGKRGTESD-REEKASSIFDDLIPGFGRTSSPPPKRTTSETTSQSQKPPYR 219

Query: 119 STKTASSVMEDPFGV-SESTSTHVGSSSEVFTDRLEEIGKFGGSGSAKVNGSSVSGGVFD 177
           + +T+S+V EDPF V  ES S+    S+  FTD LE+IGKF    +++   SSV  GVF 
Sbjct: 220 TAETSSNVEEDPFVVLEESASSPREPSTGGFTDPLEDIGKF----NSRKTDSSVHEGVFV 275

Query: 178 DLDSLNILGKSVPPVSPEINKRGNDRSLRSKSVSGTQTHPRKESIDRSSVENFDGYAQNN 237
           D D LN            + K G D + R K            SI R             
Sbjct: 276 DTDPLN-----------SLGKPGPDMNSRGK------------SILR------------- 299

Query: 238 TPVDNFQGSNDTLFNMPSVATDSSRSAGRATSPPSYMSATDSLRSAGRATSPPSY----M 293
            P  N  GS                      SPP                SP SY    +
Sbjct: 300 -PPGNISGSQ---------------------SPP--------------VESPGSYRSKKV 323

Query: 294 SATDSLRSAGRATSPPSYTSASPSETNSQVNTTPKSEDLFDSAEDVWLTVSEIPLFTQPT 353
           S  D L     +  PP+ ++ S                 F+S++DVWLTVSEIPLFTQPT
Sbjct: 324 SFDDVLEPQNTSAPPPTSSNGS-----------------FESSDDVWLTVSEIPLFTQPT 366

Query: 354 SAPPPSRPPPPRPTRVSKLETGNARKKANEYSSFSNSPQCTHSPKSTRAGTRSSAASQID 413
           SAPPP+              T   +K+ NE  S   S   +H P + RA   S  ASQ+D
Sbjct: 367 SAPPPT-------RPPPPRPTRPIKKRVNE-PSIPTSTNHSHVPSTARASVNSPTASQMD 418

Query: 414 ELEDFAMSRSWNNVNEYGEVPSPEDVES-SIAAASAAAMKEAMDRAEAKFRHAKEMRERE 472
           EL+DF++ R+    N Y + PS ED +  S AAASAAAMK+AMD+AEAKFRHAKE R +E
Sbjct: 419 ELDDFSIGRNQTAANGYPDPPSGEDSDIFSAAAASAAAMKDAMDKAEAKFRHAKERRVKE 478

Query: 473 SFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLERER-EREREEKEREK 531
           + KA+R+RE      E++    D++ER        E  E Q RL+RER ERE E  + ++
Sbjct: 479 NLKASRNRE------EDQTENYDSRER--------ELRENQVRLDRERAEREAEMVKEQE 524

Query: 532 KRIEKEKERAREIEKEREK--ARQAVERATREARERAAAEARLKAERAAVDKANAAARER 589
           +  E+ +   + IE+ERE+  ARQAVERATREARERAA E                A  +
Sbjct: 525 REREEREREQKRIERERERLLARQAVERATREARERAATE----------------AHAK 568

Query: 590 AERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQ 649
            +RAAV +A          +ARERAERAA +       E     ARE+A+ A  EA    
Sbjct: 569 VQRAAVGKA---------TDARERAERAAVQRAHAEARERAAAGAREKAAKAAAEARERV 619

Query: 650 RAE--RAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSRPSSAPR 707
            AE      +  A  A    AA      AAA    + QQ+N+NDL+SFFS  SRP+SAPR
Sbjct: 620 NAEAREKEARVRAERAAVERAAAEARGRAAAQAKAKQQQENNNDLDSFFSSISRPNSAPR 679

Query: 708 PRANTSDSLFDSQSKGGPEPARRTSV----GASSNMRKASSTTNIVDDLSSIFGAAGSSA 763
            R N  D   DS +KGG   + R S     G + N+RKASS TNIVDDLSSIFG   + +
Sbjct: 680 QRTNPLDPFQDSWNKGGSFESSRESSRVPSGPTENLRKASSVTNIVDDLSSIFGVPATQS 739

Query: 764 GEFQDVEGETEERRRARLERHQRTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEI 823
           G FQDV+GETEERRRARLERHQRTQERA KALAEKNERDLQ QR+Q E+ RI  TLDVEI
Sbjct: 740 GGFQDVDGETEERRRARLERHQRTQERAVKALAEKNERDLQVQREQVEKDRIGVTLDVEI 799

Query: 824 KRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQ 883
           KRW AGKEGN+RALL+T+QYVLWPE GWQPVSLTDLITAA+VKK YRKATLCIHPDKVQQ
Sbjct: 800 KRWGAGKEGNLRALLSTLQYVLWPECGWQPVSLTDLITAASVKKVYRKATLCIHPDKVQQ 859

Query: 884 KGANLQQKYIAEKVFDLLKEAWNKFNSEELF 914
           KGANLQQKYIAEKVFD+LKEAWNKFNSEELF
Sbjct: 860 KGANLQQKYIAEKVFDMLKEAWNKFNSEELF 890

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777401|emb|CAN64950.1| hypothetical protein VITISV_018382 [Vitis vinifera]

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 497/922 (53%), Positives = 598/922 (64%), Gaps = 136/922 (14%)

Query: 2   PVYDKPVYDDDVDIFKGLPGLRTS--------STPAAAASSSGANFDDVFASFSRSSAKH 53
           PVYDKPVYDDD  IF G+PGL+TS        ST + +       FDD+   F R   + 
Sbjct: 83  PVYDKPVYDDD--IFDGVPGLKTSGSVNYDAFSTVSGSKQKQNDAFDDLLGGFGRKDPEP 140

Query: 54  ESARE----SSPLDDLLGNLGK------------------------------KETESR-- 77
           + +       S  DDLL   G+                              K  E R  
Sbjct: 141 KRSGNVEDVGSGFDDLLHGFGRISPPSFCLNLDTTSIKLLVLKSDLSLLLVVKNEEKRKV 200

Query: 78  VKSEKDVSAFD-----------DLLPGFGRSRSPSSNRSTSESSQSQKPPSNSTKTASSV 126
           +KS      FD            L+   G   S    R T++ + + K   N+T+T S+V
Sbjct: 201 IKSLFHPQKFDLVCLQETKVEAMLMALVG---SIGVGRPTTDINWAPKSTVNATETTSNV 257

Query: 127 MEDPFGVSESTSTHVGSSSEVFTDRLEEIGKFGGSGSAKVNGSSVSG-GVFDDLDSLNIL 185
           +EDPF V ESTST   SSS +F+D LEEI K   SGS +V+GSS  G G F+DLD L+ L
Sbjct: 258 IEDPFVVLESTSTPAVSSSVLFSDPLEEISKLSNSGSTRVDGSSAVGXGAFNDLDPLDGL 317

Query: 186 GKSVPPVSPEINKRGNDRSLRS-KSVSGTQTHPRKESIDRSSVENFDGYAQNNTPVDNFQ 244
           GKS  P   E+NKRG +RS  S +  S TQT   KE I++SSVE  D ++Q   P +N+ 
Sbjct: 318 GKSAFP--SEMNKRGKNRSPSSTEPTSETQTFATKEPIEKSSVEGQDSHSQKKMPAENYW 375

Query: 245 GSNDTLFNMPSVATDSSRSAGRATSPPSYMSATDSLRSAGRATSPPSYMSATDSLRSAGR 304
            S+ TLF++P+V+TDS +                                      S  +
Sbjct: 376 ESHQTLFDIPTVSTDSHK--------------------------------------SFSQ 397

Query: 305 ATSPPSYTSASPSETNSQVNTTPKSEDLFDSAEDVWLTVSEIPLFTQPTSAPPPSRPPPP 364
             SPPS+ +ASP+ETNSQ   +P+SE+   S++DVWL VS+IPLFTQPTSAPPPSRPPP 
Sbjct: 398 TPSPPSHVNASPNETNSQGEMSPRSEENLSSSDDVWLXVSDIPLFTQPTSAPPPSRPPPT 457

Query: 365 RPTRVSKLETG-----NARKKANEYSSFSNSPQCTHSPKSTRAGTRSSAASQIDELEDFA 419
           RPT+VS+ ETG     NARKK NE+SSF+NS Q + SPK TR   +SSA SQIDELEDFA
Sbjct: 458 RPTQVSRAETGSFGSNNARKKVNEFSSFTNSSQYSQSPKLTRGTVKSSAVSQIDELEDFA 517

Query: 420 MSRSWNNVNEYGEVPSPEDVES-SIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAAR 478
           M R+ NNV+ + E    ++ E+ S+AAASAAAMKEAMDRAEAKFRHAK +RERES KA+R
Sbjct: 518 MGRTQNNVDGHAEGLYGDEFETNSVAAASAAAMKEAMDRAEAKFRHAKGVRERESAKASR 577

Query: 479 SRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEK 538
           S+E+ Q DR+E+A  QDAQER  RE Q+R + E Q R   E ERE+   ER ++   + +
Sbjct: 578 SKEAGQLDRDEKA-MQDAQERAIREKQERLEHERQEREREEEEREQRRLERTREIERERE 636

Query: 539 ERAREIEKEREKAR-------------QAVERATREARERAAAEARLKAERAAVDKANAA 585
           E+ RE  +  ++               QAVERAT+EARERAAAEARLKAERAAV K NA 
Sbjct: 637 EKEREQRRLEKERERAREIEREREKARQAVERATKEARERAAAEARLKAERAAVGKVNAE 696

Query: 586 ARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEA 645
           ARERAERAAV RAQAEARERAAAEA+ERAE+AAAEARERAN EAREKEARERA+VAR EA
Sbjct: 697 ARERAERAAVHRAQAEARERAAAEAKERAEKAAAEARERANTEAREKEARERAAVARAEA 756

Query: 646 EALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSRPSSA 705
           E   R          +E      A A  R  AAA A  NQQKN+NDLESFFSM SRPSSA
Sbjct: 757 EVRLR----------TERAAVERAAAEARERAAAAARVNQQKNENDLESFFSMGSRPSSA 806

Query: 706 PRPRANTSDSLFDSQSKG--GPEPARRTSVGASSNMRKASSTTNIVDDLSSIFGAAGSSA 763
           PRPRAN+SD +FD+Q +   GPE A RT+  ASS MRKASSTTNIVDDLSSIFGAA SS 
Sbjct: 807 PRPRANSSDPVFDTQFQNRRGPEVA-RTAASASSXMRKASSTTNIVDDLSSIFGAAPSS- 864

Query: 764 GEFQDVEGETEERRRARLERHQRTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEI 823
           G+FQDVEGE+E+RRRARLERHQRTQERAAKALAEKN+RDLQAQRDQAERHRIAETLDVEI
Sbjct: 865 GDFQDVEGESEDRRRARLERHQRTQERAAKALAEKNQRDLQAQRDQAERHRIAETLDVEI 924

Query: 824 KRWAAGKEGNIRALLATMQYVL 845
           KRW+AGKEGN+RALL+T+QY++
Sbjct: 925 KRWSAGKEGNLRALLSTLQYLM 946

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145340151|ref|NP_193013.2| auxilin-related protein 2 [Arabidopsis thaliana] gi|122230016|sp|Q0WQ57.1|AUXI2_ARATH RecName: Full=Auxilin-related protein 2 gi|110737602|dbj|BAF00742.1| auxilin-like protein [Arabidopsis thaliana] gi|332657777|gb|AEE83177.1| auxilin-related protein 2 [Arabidopsis thaliana]

 Score =  557 bits (1435), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 438/929 (47%), Positives = 539/929 (58%), Gaps = 163/929 (17%)

Query: 1   MPVYDKPVYDDDVDIFKGLPGLRTSSTPAAAASSSGANFDDVFASFSRSSAKHESARESS 60
           MPVYDKPVYDD+ D+F+ +P L+  ST     SS  A F++VF+S S S  KH   + SS
Sbjct: 111 MPVYDKPVYDDE-DVFESIPELKIPST-----SSQSARFENVFSSISSSPTKHRK-QNSS 163

Query: 61  PLDDLLGN-LGKKETESRVKSEKDVSAFDDLLPGFGRSRSPSSNRSTSES-SQSQKPPSN 118
           P DDL+GN LGKKE++   + EK  S FDDL+PGFGR+ SP + R+TSE+ SQSQKPP  
Sbjct: 164 PFDDLMGNNLGKKESD---REEKGSSIFDDLIPGFGRTSSPPAKRTTSETTSQSQKPPYR 220

Query: 119 STKTASSVMEDPFGVSESTSTHVGSSSEVFTDRLEEIGKFGGSGSAKVNGSSVSGGVFDD 178
           + +T+S+V EDPF V E +++ +   S                          +GG  D 
Sbjct: 221 TAETSSNVKEDPFVVLEESTSTLREPS--------------------------TGGFTDP 254

Query: 179 LDSLNILGKSVPPVSPEINKRGNDRSLRSKSVSGTQTHPRKESIDRSSVENFDGYAQNNT 238
           L+ +   GK         N R  D S    SV G                   G   +  
Sbjct: 255 LEEI---GK--------FNSRKTDHS----SVHG-------------------GVFVDTD 280

Query: 239 PVDNFQGSNDTLFNMPSVATDSSRSAGRA-TSPPSYMSATDS-LRSAGRATSPPSYMSAT 296
           P+D+   S   +            S G++   PP  +S + S + S+G   S    +S  
Sbjct: 281 PLDSLGKSGPDM-----------NSRGKSHLRPPGNISGSQSPVESSGLYHS--KNVSFD 327

Query: 297 DSLRSAGRATSPPSYTSASPSETNSQVNTTPKSEDLFDSAEDVWLTVSEIPLFTQPTSAP 356
           D +     +T PP+ +  S                 F+S++DVWLTVSEIPLFTQPTSAP
Sbjct: 328 DVVEPQNTSTPPPTNSDGS-----------------FESSDDVWLTVSEIPLFTQPTSAP 370

Query: 357 PPSRPPPPRPTRVSKLETGNARKKANEYSSFSNSPQCTHSPKSTRAGTRSSAASQIDELE 416
           PP+              T   +KK NE  S   S   +H P S RA   S  ASQ+DEL+
Sbjct: 371 PPT-------RPPPPRPTRPIKKKVNE-PSIPTSAYHSHVPSSGRASVNSPTASQMDELD 422

Query: 417 DFAMSRSWNNVNEYGEVPSPEDVES-SIAAASAAAMKEAMDRAEAKFRHAKEMRERESFK 475
           DF++ R+    N Y +  S ED +  S AAASAAAMK+AMD+AEAKFRHAKE RE+ES K
Sbjct: 423 DFSIGRNQTAANGYPDPSSGEDSDVFSTAAASAAAMKDAMDKAEAKFRHAKERREKESLK 482

Query: 476 AARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIE 535
           A+RSRE             D  E  D   ++RE  E+Q RL+RER     E E+ + R  
Sbjct: 483 ASRSREG------------DHTENYDS--RERELREKQVRLDRERAEREAEMEKTQARER 528

Query: 536 KEKERAREIEKEREK---ARQAVERATREARERAAAEARLKAERAAVDKANAAARERAER 592
           +E+ER ++  +   +   ARQAVERATREARE           RAA +     A  + +R
Sbjct: 529 EEREREQKRIERERERLLARQAVERATREARE-----------RAATE-----AHAKVQR 572

Query: 593 AAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRA- 651
           AAV +           +ARERAERAA +       E     ARE+A  A  EA     A 
Sbjct: 573 AAVGKV---------TDARERAERAAVQRAHAEARERAAAGAREKAEKAAAEARERANAE 623

Query: 652 --ERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSRPSSAPRPR 709
             E+ A +  A  A    AA      AAA    + QQ+N+NDL+SFF+  SRPSS PR R
Sbjct: 624 VREKEA-KVRAERAAVERAAAEARGRAAAQAKAKQQQENNNDLDSFFNSVSRPSSVPRQR 682

Query: 710 ANTSDSLFDSQSKGG----PEPARRTSVGASSNMRKASSTTNIVDDLSSIFGAAGSSAGE 765
            N  D   DS +KGG      P+ R   G + N+RKASS TNIVDDLSSIFGA  S +G 
Sbjct: 683 TNPPDPFQDSWNKGGSFESSRPSSRVPSGPTENLRKASSATNIVDDLSSIFGAPASQSGG 742

Query: 766 FQDVEGETEERRRARLERHQRTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEIKR 825
           FQDV+GETEERRRARLERHQRTQERAAKALAEKNERDLQ QR+QAE+ RI  TLDVEI+R
Sbjct: 743 FQDVDGETEERRRARLERHQRTQERAAKALAEKNERDLQVQREQAEKDRIGGTLDVEIRR 802

Query: 826 WAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKG 885
           W AGKEGN+RALL+T+QYVLWPE GWQPVSLTDLIT A+VKK YRKATLCIHPDKVQQKG
Sbjct: 803 WGAGKEGNLRALLSTLQYVLWPECGWQPVSLTDLITGASVKKVYRKATLCIHPDKVQQKG 862

Query: 886 ANLQQKYIAEKVFDLLKEAWNKFNSEELF 914
           ANLQQKYIAEKVFD+LKEAWNKFNSEELF
Sbjct: 863 ANLQQKYIAEKVFDMLKEAWNKFNSEELF 891

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334186464|ref|NP_001190708.1| auxilin-related protein 2 [Arabidopsis thaliana] gi|332657778|gb|AEE83178.1| auxilin-related protein 2 [Arabidopsis thaliana]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 440/930 (47%), Positives = 539/930 (57%), Gaps = 167/930 (17%)

Query: 1   MPVYDKPVYDDDVDIFKGLPGLRTSSTPAAAASSSGANFDDVFASFSRSSAKHESARESS 60
           MPVYDKPVYDD+ D+F+ +P L+  ST     SS  A F++VF+S S S  KH   + SS
Sbjct: 111 MPVYDKPVYDDE-DVFESIPELKIPST-----SSQSARFENVFSSISSSPTKHRK-QNSS 163

Query: 61  PLDDLLGN-LGKKETESRVKSEKDVSAFDDLLPGFGRSRSPSSNRSTSES-SQSQKPPSN 118
           P DDL+GN LGKKE++   + EK  S FDDL+PGFGR+ SP + R+TSE+ SQSQKPP  
Sbjct: 164 PFDDLMGNNLGKKESD---REEKGSSIFDDLIPGFGRTSSPPAKRTTSETTSQSQKPPYR 220

Query: 119 STKTASSVMEDPFGVSESTSTHVGSSSEVFTDRLEEIGKFGGSGSAKVNGSSVSGGVFDD 178
           + +T+S+V EDPF V E +++ +   S                          +GG  D 
Sbjct: 221 TAETSSNVKEDPFVVLEESTSTLREPS--------------------------TGGFTDP 254

Query: 179 LDSLNILGKSVPPVSPEINKRGNDRSLRSKSVSGTQTHPRKESIDRSSVENFDGYAQNNT 238
           L+ +   GK         N R  D S    SV G                   G   +  
Sbjct: 255 LEEI---GK--------FNSRKTDHS----SVHG-------------------GVFVDTD 280

Query: 239 PVDNFQGSNDTLFNMPSVATDSSRSAGRA-TSPPSYMSATDS-LRSAGRATSPPSYMSAT 296
           P+D+   S   +            S G++   PP  +S + S + S+G   S    +S  
Sbjct: 281 PLDSLGKSGPDM-----------NSRGKSHLRPPGNISGSQSPVESSGLYHS--KNVSFD 327

Query: 297 DSLRSAGRATSPPSYTSASPSETNSQVNTTPKSEDLFDSAEDVWLTVSEIPLFTQPTSAP 356
           D +     +T PP+ +  S                 F+S++DVWLTVSEIPLFTQPTSAP
Sbjct: 328 DVVEPQNTSTPPPTNSDGS-----------------FESSDDVWLTVSEIPLFTQPTSAP 370

Query: 357 PPSRPPPPRPTRVSKLETGNARKKANEYSSFSNSPQCTHSPKSTRAGTRSSAASQIDELE 416
           PP+              T   +KK NE  S   S   +H P S RA   S  ASQ+DEL+
Sbjct: 371 PPT-------RPPPPRPTRPIKKKVNE-PSIPTSAYHSHVPSSGRASVNSPTASQMDELD 422

Query: 417 DFAMSRSWNNVNEYGEVPSPEDVES-SIAAASAAAMKEAMDRAEAKFRHAKEMRERESFK 475
           DF++ R+    N Y +  S ED +  S AAASAAAMK+AMD+AEAKFRHAKE RE+ES K
Sbjct: 423 DFSIGRNQTAANGYPDPSSGEDSDVFSTAAASAAAMKDAMDKAEAKFRHAKERREKESLK 482

Query: 476 AARSRESVQPDREERATQQDAQERLD-REMQQREKGEEQRRLEREREREREEKEREKKRI 534
           A+RSRE             D  E  D RE + REK   Q RL+RER     E E+ + R 
Sbjct: 483 ASRSREG------------DHTENYDSRERELREK---QVRLDRERAEREAEMEKTQARE 527

Query: 535 EKEKERAREIEKEREK---ARQAVERATREARERAAAEARLKAERAAVDKANAAARERAE 591
            +E+ER ++  +   +   ARQAVERATREARE           RAA +     A  + +
Sbjct: 528 REEREREQKRIERERERLLARQAVERATREARE-----------RAATE-----AHAKVQ 571

Query: 592 RAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRA 651
           RAAV +           +ARERAERAA +       E     ARE+A  A  EA     A
Sbjct: 572 RAAVGKV---------TDARERAERAAVQRAHAEARERAAAGAREKAEKAAAEARERANA 622

Query: 652 ---ERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSRPSSAPRP 708
              E+ A +  A  A    AA      AAA    + QQ+N+NDL+SFF+  SRPSS PR 
Sbjct: 623 EVREKEA-KVRAERAAVERAAAEARGRAAAQAKAKQQQENNNDLDSFFNSVSRPSSVPRQ 681

Query: 709 RANTSDSLFDSQSKGG----PEPARRTSVGASSNMRKASSTTNIVDDLSSIFGAAGSSAG 764
           R N  D   DS +KGG      P+ R   G + N+RKASS TNIVDDLSSIFGA  S +G
Sbjct: 682 RTNPPDPFQDSWNKGGSFESSRPSSRVPSGPTENLRKASSATNIVDDLSSIFGA--SQSG 739

Query: 765 EFQDVEGETEERRRARLERHQRTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEIK 824
            FQDV+GETEERRRARLERHQRTQERAAKALAEKNERDLQ QR+QAE+ RI  TLDVEI+
Sbjct: 740 GFQDVDGETEERRRARLERHQRTQERAAKALAEKNERDLQVQREQAEKDRIGGTLDVEIR 799

Query: 825 RWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQK 884
           RW AGKEGN+RALL+T+QYVLWPE GWQPVSLTDLIT A+VKK YRKATLCIHPDKVQQK
Sbjct: 800 RWGAGKEGNLRALLSTLQYVLWPECGWQPVSLTDLITGASVKKVYRKATLCIHPDKVQQK 859

Query: 885 GANLQQKYIAEKVFDLLKEAWNKFNSEELF 914
           GANLQQKYIAEKVFD+LKEAWNKFNSEELF
Sbjct: 860 GANLQQKYIAEKVFDMLKEAWNKFNSEELF 889

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457349|ref|XP_004146411.1| PREDICTED: auxilin-related protein 1-like [Cucumis sativus]

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 447/956 (46%), Positives = 554/956 (57%), Gaps = 149/956 (15%)

Query: 1   MPVYDKPVYDDDVDIFKGLPGLRTSSTPAAAASSSGANFDDVFASFSRSSAKHESARESS 60
           +PVYDKPVYDDD  IF G+PGLR SS            +DDVF+S S S  K ESA    
Sbjct: 126 LPVYDKPVYDDD--IFDGIPGLRNSSK---------VQYDDVFSSMS-SPPKAESA---- 169

Query: 61  PLDDLLGNLGKKETESRVKS-------EKDVSAFDDLLPGFGRSRSPSSNRSTSESSQSQ 113
             DDLLG  GK ++  + K        ++++ AFDDL+PGF R  SP  +RS S  S S 
Sbjct: 170 -FDDLLGGFGKSDSVPKSKGGKGTQSKDREIPAFDDLIPGF-RGGSPPGDRSNS--SWSS 225

Query: 114 KPPSNSTKTASSVMEDPFGVS-ESTSTHVGSSSEVFTDRLEEIGKFGGSGSAKVNG---S 169
           +P S  + T+S  ME+PFGVS E    H            EE    G   S K +G   S
Sbjct: 226 EPTSVKSTTSSKAMENPFGVSREHNDLH------------EEASDIGNFKSPKFDGYPSS 273

Query: 170 SVSGGVFDDLDSLNILGKSVPPVSPEINKRGNDRSLRSKSVSGTQTHPR----KESIDRS 225
             +   FDD+D    LGKSVP  S E N R   RS     V GT   P+    K+++++ 
Sbjct: 274 DANNKAFDDMDPFASLGKSVPAFSSEGNNRAKARS--PPRVDGTAAGPQNSNSKDAMEKP 331

Query: 226 SVENFDGYAQNNTPVDNFQGSNDTLFNMPSVATDSSRSAGRATSPPSYMSATDSLRSAGR 285
           S +      + + P  N +  +  +F++P+V+T+S +   ++TS                
Sbjct: 332 STKTSVQPLKKDVPAKNDRHFDQPVFDIPTVSTNSHKFVPQSTS---------------- 375

Query: 286 ATSPPSYMSATDSLRSAGRATSPPSYTSASPSETNSQVNTTPKSEDLFDSAEDVWLTVSE 345
              PP    A+D     G                      T + ED  +  E +WLTVSE
Sbjct: 376 ---PP----ASDDANVMGE---------------------TSRFEDSVEPDE-IWLTVSE 406

Query: 346 IPLFTQPTSAPPPSRPPPPRPTRVSKLETG-----NARKKANEYSSFSNSPQCTHSPKST 400
           IPLFTQPT APPPSRPPPP P +V K   G     +++  AN++SSF +S      PKST
Sbjct: 407 IPLFTQPTVAPPPSRPPPPIPQQVPKEGMGPYGLRSSKMNANDFSSFPSSTHHFQIPKST 466

Query: 401 RAGTRSSAASQIDELEDFAMSRSWNNVNEYGEVPSPEDVESSIAAASAAAMKEAMDRAEA 460
               R   +S +DELE FAM R+ +N +E     S E+ E + AAA   AMKEAMDRAEA
Sbjct: 467 SPSMRDQVSS-VDELEQFAMGRNPSNADEQVNSLSNEEAEMNSAAA---AMKEAMDRAEA 522

Query: 461 KFRHAKEMRERESFKAARSRESVQPDREE---RATQQDAQERLDREMQQREKGEEQRRLE 517
           KF+HAKE+RERES + ++ +E+V  DR+E   R+ + + +E +DRE  QRE+  E++  E
Sbjct: 523 KFKHAKEVRERESTRTSKIKEAVYWDRDEKATRSDRVEDEEAIDRERFQREREREEKEKE 582

Query: 518 REREREREEKEREKKRIEKEKERAREIEKERE-----------KARQAVERATREARERA 566
           + +    +E+ RE +R  +EKE+     ++             K RQAVERATREARERA
Sbjct: 583 KRKAERDKERARELEREREEKEKELRRLEKERERARELEMERIKVRQAVERATREARERA 642

Query: 567 AAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAE----RAAAEAR 622
           A EARLKA                ERAAV++  AEARERA   A +RA+      AA   
Sbjct: 643 AIEARLKA----------------ERAAVEKVNAEARERAERAAVQRAQSEARERAAAEA 686

Query: 623 ERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARAN 682
                 A  +        A    E   R   +      + A  R  A    R  AAA A 
Sbjct: 687 RERAERAATEARERAEKAAAEAKEREARERASRAAVERAAAEARERAAVDARERAAAAAR 746

Query: 683 QNQQKNDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPARRTSVGASS----N 738
            +QQKN+NDLESFFSM  RPSS P+ RAN  D+ FD+QS     P R  +   S     N
Sbjct: 747 ASQQKNENDLESFFSMG-RPSSVPKHRANPMDN-FDAQS-----PNRPETTKPSPTPPTN 799

Query: 739 MRKASSTTNIVDDLSSIFGAAGSSAGEFQDVEGETEERRRARLERHQRTQERAAKALAEK 798
           MRKASS TNIVDDLSSIFG   SS GEFQ+V+GETEERRRARLERHQR Q RAAKALAEK
Sbjct: 800 MRKASSATNIVDDLSSIFGGPPSS-GEFQEVDGETEERRRARLERHQRVQTRAAKALAEK 858

Query: 799 NERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTD 858
           NERDLQ QR+QAERHRIAETLD EIKRWAAGKEGN+RALL+T+QYVLWPE GWQPVSLT+
Sbjct: 859 NERDLQMQREQAERHRIAETLDAEIKRWAAGKEGNLRALLSTLQYVLWPECGWQPVSLTE 918

Query: 859 LITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEELF 914
           ++   AVKK YRKATLCIHPDKVQQKGA LQQKY+AEKVFD+LKEAWNKFNSEELF
Sbjct: 919 MVIPNAVKKVYRKATLCIHPDKVQQKGATLQQKYVAEKVFDILKEAWNKFNSEELF 974

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	914
TAIR|locus:2135763	891	AT4G12770 [Arabidopsis thalian	0.253	0.260	0.627	2.7e-105
TAIR|locus:2135778	904	AT4G12780 [Arabidopsis thalian	0.253	0.256	0.627	3.9e-102
TAIR|locus:2036967	523	AT1G21660 [Arabidopsis thalian	0.212	0.370	0.505	9e-56
TAIR|locus:2115245	1422	AT4G36520 [Arabidopsis thalian	0.140	0.090	0.773	5.1e-55
TAIR|locus:2018462	1448	AUL1 "AT1G75310" [Arabidopsis	0.141	0.089	0.651	3e-48
TAIR|locus:2037256	651	JAC1 "J-domain protein require	0.119	0.167	0.508	2e-27
TAIR|locus:2009817	455	AT1G30280 [Arabidopsis thalian	0.136	0.274	0.396	1.7e-19
UNIPROTKB|F1NC60	1225	Gga.54538 "Uncharacterized pro	0.120	0.089	0.413	2e-17
UNIPROTKB|F1NL76	1265	Gga.54538 "Uncharacterized pro	0.120	0.086	0.413	4.1e-17
UNIPROTKB|F1NC57	1266	Gga.54538 "Uncharacterized pro	0.120	0.086	0.413	1.7e-16

TAIR|locus:2135763 AT4G12770 [Arabidopsis thaliana (taxid:3702)]

 Score = 730 (262.0 bits), Expect = 2.7e-105, Sum P(3) = 2.7e-105
 Identities = 148/236 (62%), Positives = 164/236 (69%)

Query:   683 QNQQKNDNDLEXXXXXXXXXXXXXXXXXNTSDSLFDSQSKGGP----EPARRTSVGASSN 738
             + QQ+N+NDL+                 N  D   DS +KGG      P+ R   G + N
Sbjct:   656 KQQQENNNDLDSFFNSVSRPSSVPRQRTNPPDPFQDSWNKGGSFESSRPSSRVPSGPTEN 715

Query:   739 MRKASSTTNIVDDLXXXXXXXXXXXXEFQDVXXXXXXXXXXXXXXHQRTQERAAKALAEK 798
             +RKASS TNIVDDL             FQDV              HQRTQERAAKALAEK
Sbjct:   716 LRKASSATNIVDDLSSIFGAPASQSGGFQDVDGETEERRRARLERHQRTQERAAKALAEK 775

Query:   799 NERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTD 858
             NERDLQ QR+QAE+ RI  TLDVEI+RW AGKEGN+RALL+T+QYVLWPE GWQPVSLTD
Sbjct:   776 NERDLQVQREQAEKDRIGGTLDVEIRRWGAGKEGNLRALLSTLQYVLWPECGWQPVSLTD 835

Query:   859 LITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEELF 914
             LIT A+VKK YRKATLCIHPDKVQQKGANLQQKYIAEKVFD+LKEAWNKFNSEELF
Sbjct:   836 LITGASVKKVYRKATLCIHPDKVQQKGANLQQKYIAEKVFDMLKEAWNKFNSEELF 891

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2135778 AT4G12780 [Arabidopsis thaliana (taxid:3702)]

 Score = 723 (259.6 bits), Expect = 3.9e-102, Sum P(3) = 3.9e-102
 Identities = 148/236 (62%), Positives = 162/236 (68%)

Query:   683 QNQQKNDNDLEXXXXXXXXXXXXXXXXXNTSDSLFDSQSKGGPEPARRTSV----GASSN 738
             + QQ+N NDL+                 N  D   DS +KGG   + R S+    G   N
Sbjct:   669 KQQQENTNDLDSFFSSISRPNSAPRQRTNPLDPFQDSWNKGGSFESSRESLRVPPGQPEN 728

Query:   739 MRKASSTTNIVDDLXXXXXXXXXXXXEFQDVXXXXXXXXXXXXXXHQRTQERAAKALAEK 798
             +RK SS TNIVDDL             FQDV              HQRTQERAAKALAEK
Sbjct:   729 LRKTSSVTNIVDDLSSIFGASASQSGGFQDVDGETEERRRARLERHQRTQERAAKALAEK 788

Query:   799 NERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTD 858
             NERDLQ QR+Q E+ RI  TLDVEIKRW AGKEGN+RALL+T+QYVLWPE GWQPVSLTD
Sbjct:   789 NERDLQVQREQVEKDRIGVTLDVEIKRWGAGKEGNLRALLSTLQYVLWPECGWQPVSLTD 848

Query:   859 LITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEELF 914
             LITAA+VKK YRKATLCIHPDKVQQKGANLQQKYIAEKVFD+LKEAWNKFNSEELF
Sbjct:   849 LITAASVKKVYRKATLCIHPDKVQQKGANLQQKYIAEKVFDMLKEAWNKFNSEELF 904

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2036967 AT1G21660 [Arabidopsis thaliana (taxid:3702)]

 Score = 500 (181.1 bits), Expect = 9.0e-56, Sum P(3) = 9.0e-56
 Identities = 99/196 (50%), Positives = 132/196 (67%)

Query:   718 DSQSKGGPEPARRTSVGASSNMRKASSTTNIVDDLXXXXXXXXXXXXEFQDVXXXXXXXX 777
             ++  K      ++T  G S N +K  +  N+VDD             +F+++        
Sbjct:   329 ETTRKQASNAPKKTPNGVS-NAKKPPAPANLVDDFSALFGEDPIFR-QFEEIPGESEERR 386

Query:   778 XXXXXXHQRTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRAL 837
                    QRT+ R A+A+A+ N RD Q++ +Q +R RI+ET+D EI+RWA GKEGN+RAL
Sbjct:   387 KARWDREQRTKSRVAQAVADMNNRDHQSRIEQEQRTRISETVDTEIRRWATGKEGNMRAL 446

Query:   838 LATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKV 897
             L+++  VLWP  GW+ VS+TDLIT++AVKK YRKATL +HPDKVQQKGA L+QKYIAEKV
Sbjct:   447 LSSLHIVLWPGCGWEAVSITDLITSSAVKKVYRKATLYVHPDKVQQKGATLEQKYIAEKV 506

Query:   898 FDLLKEAWNKFNSEEL 913
             FD+LKEAWNKFN EEL
Sbjct:   507 FDILKEAWNKFNKEEL 522

GO:0005634 "nucleus" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

TAIR|locus:2115245 AT4G36520 [Arabidopsis thaliana (taxid:3702)]

 Score = 541 (195.5 bits), Expect = 5.1e-55, Sum P(3) = 5.1e-55
 Identities = 99/128 (77%), Positives = 117/128 (91%)

Query:   784 HQRTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQY 843
             HQRT +R AKALAEKN RDL AQR+QAER RIAETLD E+KRW++GKEGNIRALL+T+QY
Sbjct:  1293 HQRTADRVAKALAEKNMRDLVAQREQAERIRIAETLDTEVKRWSSGKEGNIRALLSTLQY 1352

Query:   844 VLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKE 903
             +L PESGWQP+ LT++IT+AAVK+ YRKATLC+HPDK+QQ+GAN+ QKYI EKVFDLLKE
Sbjct:  1353 ILGPESGWQPLPLTEVITSAAVKRAYRKATLCVHPDKLQQRGANIHQKYICEKVFDLLKE 1412

Query:   904 AWNKFNSE 911
             AWN+FNSE
Sbjct:  1413 AWNRFNSE 1420

GO:0031072 "heat shock protein binding" evidence=IEA

TAIR|locus:2018462 AUL1 "AT1G75310" [Arabidopsis thaliana (taxid:3702)]

 Score = 482 (174.7 bits), Expect = 3.0e-48, Sum P(3) = 3.0e-48
 Identities = 84/129 (65%), Positives = 113/129 (87%)

Query:   784 HQRTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQY 843
             HQRT +RAA+ALAEK  RDL+ Q++Q ER+R+AE LD ++KRW++GKE N+RAL++T+QY
Sbjct:  1319 HQRTSDRAAEALAEKKLRDLKTQKEQTERNRLAEALDADVKRWSSGKENNLRALISTLQY 1378

Query:   844 VLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKE 903
             +L  ESGW+P+ LTDL+++A+V+K YRKATL +HPDK+QQ+GA+ QQKYI EKVFDLLKE
Sbjct:  1379 ILGAESGWKPIPLTDLVSSASVRKAYRKATLYVHPDKLQQRGASTQQKYICEKVFDLLKE 1438

Query:   904 AWNKFNSEE 912
             AWNKF ++E
Sbjct:  1439 AWNKFGADE 1447

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

TAIR|locus:2037256 JAC1 "J-domain protein required for chloroplast accumulation response 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 2.0e-27, Sum P(3) = 2.0e-27
 Identities = 58/114 (50%), Positives = 88/114 (77%)

Query:   797 EKNERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSL 856
             ++N+ + +A +D  E     + +D +I++W++GK GNIR+LL+T+QY+LW  SGW+PV L
Sbjct:   539 DENKME-EANKDAEE----IKNIDAKIRKWSSGKSGNIRSLLSTLQYILWSGSGWKPVPL 593

Query:   857 TDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNS 910
              D+I   AV+K Y++A L +HPDK+QQKGA+  QKY+AEKVF+LL+EAW+ FN+
Sbjct:   594 MDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNT 647

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009903 "chloroplast avoidance movement" evidence=IMP

GO:0009904 "chloroplast accumulation movement" evidence=IMP

GO:0071483 "cellular response to blue light" evidence=IMP

GO:0007015 "actin filament organization" evidence=IMP

TAIR|locus:2009817 AT1G30280 [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
 Identities = 52/131 (39%), Positives = 80/131 (61%)

Query:   788 QERAAKALAEKNERD-LQAQRDQ----AERHRIAETLDVEIKRWAAGKEGNIRALLATMQ 842
             +ER+ +  A++ E D + ++R +    +E     E  D EI+ W  GKE NIR LL+T+ 
Sbjct:   321 KERSQRPEAKQTEEDVIDSRRSEEEPKSEEEMEMEMKDEEIRIWLTGKETNIRLLLSTLH 380

Query:   843 YVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQ-QKYIAEKVFDLL 901
             +VLW  S W  + L +L   + VKK Y++A LC+HPDK+QQ+G     QK +A +VF +L
Sbjct:   381 HVLWSNSNWDSIPLANLRDGSQVKKAYQRARLCLHPDKLQQRGGTSPIQKSVASRVFAIL 440

Query:   902 KEAWNKFNSEE 912
             +EAW  + + E
Sbjct:   441 QEAWAVYVTNE 451

GO:0005737 "cytoplasm" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

UNIPROTKB|F1NC60 Gga.54538 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 216 (81.1 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
 Identities = 48/116 (41%), Positives = 71/116 (61%)

Query:   797 EKNERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWP-ESGWQPVS 855
             +K  + +   R Q E  +  + L ++I  W  GKE NIRAL++T+  VLW  E+ W+PVS
Sbjct:  1109 KKGPKTIAEMRKQ-EMSKDMDPLKLKILEWIEGKERNIRALISTLHTVLWEGENKWKPVS 1167

Query:   856 LTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911
             + DL+T   VKK YRKA L +HPDK    G   +Q Y A+ +F  L +AW++F ++
Sbjct:  1168 MADLVTPEQVKKYYRKAVLVVHPDKAT--GQPYEQ-Y-AKMIFMELSDAWSEFENQ 1219

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1NL76 Gga.54538 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 216 (81.1 bits), Expect = 4.1e-17, Sum P(3) = 4.1e-17
 Identities = 48/116 (41%), Positives = 71/116 (61%)

Query:   797 EKNERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWP-ESGWQPVS 855
             +K  + +   R Q E  +  + L ++I  W  GKE NIRAL++T+  VLW  E+ W+PVS
Sbjct:  1149 KKGPKTIAEMRKQ-EMSKDMDPLKLKILEWIEGKERNIRALISTLHTVLWEGENKWKPVS 1207

Query:   856 LTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911
             + DL+T   VKK YRKA L +HPDK    G   +Q Y A+ +F  L +AW++F ++
Sbjct:  1208 MADLVTPEQVKKYYRKAVLVVHPDKAT--GQPYEQ-Y-AKMIFMELSDAWSEFENQ 1259

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1NC57 Gga.54538 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 216 (81.1 bits), Expect = 1.7e-16, Sum P(3) = 1.7e-16
 Identities = 48/116 (41%), Positives = 71/116 (61%)

Query:   797 EKNERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWP-ESGWQPVS 855
             +K  + +   R Q E  +  + L ++I  W  GKE NIRAL++T+  VLW  E+ W+PVS
Sbjct:  1150 KKGPKTIAEMRKQ-EMSKDMDPLKLKILEWIEGKERNIRALISTLHTVLWEGENKWKPVS 1208

Query:   856 LTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911
             + DL+T   VKK YRKA L +HPDK    G   +Q Y A+ +F  L +AW++F ++
Sbjct:  1209 MADLVTPEQVKKYYRKAVLVVHPDKAT--GQPYEQ-Y-AKMIFMELSDAWSEFENQ 1260

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WQ57	AUXI2_ARATH	No assigned EC number	0.4714	0.8380	0.8597	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	914
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	5e-20
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	9e-18
TIGR02794	346	TIGR02794, tolA_full, TolA protein	3e-17
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	1e-16
PRK05035	695	PRK05035, PRK05035, electron transport complex pro	7e-16
COG3064	387	COG3064, TolA, Membrane protein involved in colici	2e-14
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-14
TIGR02794	346	TIGR02794, tolA_full, TolA protein	4e-14
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	9e-14
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	2e-13
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-13
COG2268	548	COG2268, COG2268, Uncharacterized protein conserve	1e-12
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-12
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-12
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	7e-12
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-12
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-11
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	5e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-11
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	6e-11
PRK12678	672	PRK12678, PRK12678, transcription termination fact	8e-11
COG2268	548	COG2268, COG2268, Uncharacterized protein conserve	1e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-10
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-10
PRK12678	672	PRK12678, PRK12678, transcription termination fact	2e-10
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-10
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-10
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-10
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	6e-10
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	8e-10
COG3064	387	COG3064, TolA, Membrane protein involved in colici	1e-09
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-09
COG2268	548	COG2268, COG2268, Uncharacterized protein conserve	2e-09
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	2e-09
PRK12678	672	PRK12678, PRK12678, transcription termination fact	2e-09
PRK07735	430	PRK07735, PRK07735, NADH dehydrogenase subunit C;	3e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-09
PRK07735	430	PRK07735, PRK07735, NADH dehydrogenase subunit C;	4e-09
pfam13514	1118	pfam13514, AAA_27, AAA domain	4e-09
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	5e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-08
COG2268	548	COG2268, COG2268, Uncharacterized protein conserve	1e-08
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	1e-08
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	1e-08
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-08
PRK07735	430	PRK07735, PRK07735, NADH dehydrogenase subunit C;	1e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-08
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	2e-08
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	2e-08
pfam13514	1118	pfam13514, AAA_27, AAA domain	2e-08
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	2e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-08
pfam13830	321	pfam13830, DUF4192, Domain of unknown function (DU	4e-08
PRK06991	270	PRK06991, PRK06991, ferredoxin; Provisional	4e-08
PRK05035	695	PRK05035, PRK05035, electron transport complex pro	1e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-07
pfam13514	1118	pfam13514, AAA_27, AAA domain	1e-07
PRK06991	270	PRK06991, PRK06991, ferredoxin; Provisional	1e-07
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	1e-07
TIGR02794	346	TIGR02794, tolA_full, TolA protein	2e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-07
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	2e-07
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	2e-07
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	2e-07
pfam13514	1118	pfam13514, AAA_27, AAA domain	2e-07
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	2e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-07
PRK07735	430	PRK07735, PRK07735, NADH dehydrogenase subunit C;	3e-07
TIGR00618	1042	TIGR00618, sbcc, exonuclease SbcC	3e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-07
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	8e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-07
PRK12678	672	PRK12678, PRK12678, transcription termination fact	1e-06
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	1e-06
COG0711	161	COG0711, AtpF, F0F1-type ATP synthase, subunit b [	1e-06
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	1e-06
COG3064	387	COG3064, TolA, Membrane protein involved in colici	2e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-06
PRK14900	1052	PRK14900, valS, valyl-tRNA synthetase; Provisional	2e-06
PRK12678	672	PRK12678, PRK12678, transcription termination fact	3e-06
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	3e-06
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	3e-06
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	3e-06
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	3e-06
PRK12678	672	PRK12678, PRK12678, transcription termination fact	4e-06
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	4e-06
PRK12705	508	PRK12705, PRK12705, hypothetical protein; Provisio	4e-06
PLN03237	1465	PLN03237, PLN03237, DNA topoisomerase 2; Provision	4e-06
PLN03237	1465	PLN03237, PLN03237, DNA topoisomerase 2; Provision	5e-06
PRK00247	429	PRK00247, PRK00247, putative inner membrane protei	6e-06
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	7e-06
COG1566	352	COG1566, EmrA, Multidrug resistance efflux pump [D	7e-06
PRK06669	281	PRK06669, fliH, flagellar assembly protein H; Vali	7e-06
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	8e-06
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	8e-06
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	8e-06
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	8e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	9e-06
PRK05035	695	PRK05035, PRK05035, electron transport complex pro	1e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-05
pfam05262	489	pfam05262, Borrelia_P83, Borrelia P83/100 protein	1e-05
PRK05759	156	PRK05759, PRK05759, F0F1 ATP synthase subunit B; V	1e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-05
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	2e-05
PRK05759	156	PRK05759, PRK05759, F0F1 ATP synthase subunit B; V	2e-05
COG1340	294	COG1340, COG1340, Uncharacterized archaeal coiled-	2e-05
pfam08017	393	pfam08017, Fibrinogen_BP, Fibrinogen binding prote	2e-05
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	3e-05
PRK12705	508	PRK12705, PRK12705, hypothetical protein; Provisio	3e-05
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	3e-05
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	3e-05
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	4e-05
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	4e-05
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	4e-05
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	4e-05
PRK12472	508	PRK12472, PRK12472, hypothetical protein; Provisio	4e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-05
pfam05262	489	pfam05262, Borrelia_P83, Borrelia P83/100 protein	5e-05
PRK05759	156	PRK05759, PRK05759, F0F1 ATP synthase subunit B; V	5e-05
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	5e-05
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	5e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	5e-05
COG0330	291	COG0330, HflC, Membrane protease subunits, stomati	6e-05
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	8e-05
PRK00106	535	PRK00106, PRK00106, hypothetical protein; Provisio	9e-05
COG0711	161	COG0711, AtpF, F0F1-type ATP synthase, subunit b [	1e-04
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	1e-04
PRK07352	174	PRK07352, PRK07352, F0F1 ATP synthase subunit B; V	1e-04
COG1842	225	COG1842, PspA, Phage shock protein A (IM30), suppr	1e-04
TIGR02971	327	TIGR02971, heterocyst_DevB, ABC exporter membrane	1e-04
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	2e-04
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	2e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	2e-04
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	2e-04
PRK00247	429	PRK00247, PRK00247, putative inner membrane protei	2e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-04
COG3599	212	COG3599, DivIVA, Cell division initiation protein	2e-04
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	2e-04
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	2e-04
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	3e-04
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	3e-04
COG0330	291	COG0330, HflC, Membrane protease subunits, stomati	3e-04
pfam09756	189	pfam09756, DDRGK, DDRGK domain	3e-04
TIGR01843	423	TIGR01843, type_I_hlyD, type I secretion membrane	3e-04
TIGR03345	852	TIGR03345, VI_ClpV1, type VI secretion ATPase, Clp	3e-04
pfam00769	244	pfam00769, ERM, Ezrin/radixin/moesin family	3e-04
pfam05701	484	pfam05701, DUF827, Plant protein of unknown functi	3e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-04
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	4e-04
PRK12472	508	PRK12472, PRK12472, hypothetical protein; Provisio	4e-04
PRK12472	508	PRK12472, PRK12472, hypothetical protein; Provisio	4e-04
PRK12472	508	PRK12472, PRK12472, hypothetical protein; Provisio	4e-04
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	4e-04
pfam09756	189	pfam09756, DDRGK, DDRGK domain	4e-04
PRK11637	428	PRK11637, PRK11637, AmiB activator; Provisional	4e-04
COG1538	457	COG1538, TolC, Outer membrane protein [Cell envelo	4e-04
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	4e-04
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	4e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-04
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	5e-04
TIGR01843	423	TIGR01843, type_I_hlyD, type I secretion membrane	5e-04
pfam05914	379	pfam05914, RIB43A, RIB43A	5e-04
COG5281	833	COG5281, COG5281, Phage-related minor tail protein	5e-04
TIGR03345	852	TIGR03345, VI_ClpV1, type VI secretion ATPase, Clp	6e-04
pfam10174	774	pfam10174, Cast, RIM-binding protein of the cytoma	6e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	6e-04
PRK13108	460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	6e-04
pfam03962	188	pfam03962, Mnd1, Mnd1 family	7e-04
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	8e-04
COG5192	1077	COG5192, BMS1, GTP-binding protein required for 40	8e-04
PHA00430	568	PHA00430, PHA00430, tail fiber protein	8e-04
pfam13863	126	pfam13863, DUF4200, Domain of unknown function (DU	9e-04
COG0711	161	COG0711, AtpF, F0F1-type ATP synthase, subunit b [	0.001
COG0711	161	COG0711, AtpF, F0F1-type ATP synthase, subunit b [	0.001
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	0.001
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.001
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	0.001
pfam09756	189	pfam09756, DDRGK, DDRGK domain	0.001
TIGR03345	852	TIGR03345, VI_ClpV1, type VI secretion ATPase, Clp	0.001
PHA00430	568	PHA00430, PHA00430, tail fiber protein	0.001
PRK09098	233	PRK09098, PRK09098, type III secretion system prot	0.001
TIGR03346	852	TIGR03346, chaperone_ClpB, ATP-dependent chaperone	0.001
pfam04632	649	pfam04632, FUSC, Fusaric acid resistance protein f	0.001
pfam04156	186	pfam04156, IncA, IncA protein	0.001
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	0.001
PLN02316	1036	PLN02316, PLN02316, synthase/transferase	0.001
PLN03086	567	PLN03086, PLN03086, PRLI-interacting factor K; Pro	0.001
pfam12037	276	pfam12037, DUF3523, Domain of unknown function (DU	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
pfam13514	1118	pfam13514, AAA_27, AAA domain	0.002
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.002
PRK06991	270	PRK06991, PRK06991, ferredoxin; Provisional	0.002
PRK00247	429	PRK00247, PRK00247, putative inner membrane protei	0.002
PRK05759	156	PRK05759, PRK05759, F0F1 ATP synthase subunit B; V	0.002
PRK07352	174	PRK07352, PRK07352, F0F1 ATP synthase subunit B; V	0.002
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.002
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.002
pfam09756	189	pfam09756, DDRGK, DDRGK domain	0.002
pfam00769	244	pfam00769, ERM, Ezrin/radixin/moesin family	0.002
pfam00769	244	pfam00769, ERM, Ezrin/radixin/moesin family	0.002
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.002
COG0845	372	COG0845, AcrA, Membrane-fusion protein [Cell envel	0.002
pfam07111	739	pfam07111, HCR, Alpha helical coiled-coil rod prot	0.002
PTZ00491	850	PTZ00491, PTZ00491, major vault protein; Provision	0.002
pfam00430	132	pfam00430, ATP-synt_B, ATP synthase B/B' CF(0)	0.002
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	0.003
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	0.003
PRK13108	460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	0.003
TIGR03185	650	TIGR03185, DNA_S_dndD, DNA sulfur modification pro	0.003
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.003
pfam09731	493	pfam09731, Mitofilin, Mitochondrial inner membrane	0.003
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.003
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	0.003
pfam05279	240	pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylas	0.003
PTZ00399	651	PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro	0.003
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	0.004
PRK00247	429	PRK00247, PRK00247, putative inner membrane protei	0.004
COG1566	352	COG1566, EmrA, Multidrug resistance efflux pump [D	0.004
COG1566	352	COG1566, EmrA, Multidrug resistance efflux pump [D	0.004
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.004
PRK11637	428	PRK11637, PRK11637, AmiB activator; Provisional	0.004
pfam00430	132	pfam00430, ATP-synt_B, ATP synthase B/B' CF(0)	0.004
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.004
PRK14521	186	PRK14521, rpsP, 30S ribosomal protein S16; Provisi	0.004
pfam10721	162	pfam10721, DUF2514, Protein of unknown function (D	0.004
pfam10721	162	pfam10721, DUF2514, Protein of unknown function (D	0.004
pfam06637	442	pfam06637, PV-1, PV-1 protein (PLVAP)	0.004
TIGR01554	384	TIGR01554, major_cap_HK97, phage major capsid prot	0.004

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 92.9 bits (231), Expect = 5e-20
 Identities = 74/200 (37%), Positives = 117/200 (58%), Gaps = 12/200 (6%)

Query: 488 EERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKE 547
           E+   QQ  Q+   R  +QR+K E+Q+    E ++++  ++   K++EKE+  A+E +K+
Sbjct: 62  EQYNRQQQQQKSAKRAEEQRKKKEQQQ--AEELQQKQAAEQERLKQLEKERLAAQEQKKQ 119

Query: 548 REKARQAVERATREARE---RAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARE 604
            E+A +      ++A E   +AAA A+ KAE  A  K  AAA ++A   A ++A+AEA +
Sbjct: 120 AEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEA--KRAAAAAKKAAAEAKKKAEAEAAK 177

Query: 605 RAAAEARERAE-----RAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRA 659
           +AAAEA+++AE     +AAAEA+++A AEA++K A E    A  EA+A      A  + A
Sbjct: 178 KAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAA 237

Query: 660 ASEARERAAAEARERAAAAA 679
           A +A    AAE    A AAA
Sbjct: 238 AEKAAAAKAAEKAAAAKAAA 257

Length = 387

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 86.0 bits (213), Expect = 9e-18
 Identities = 61/182 (33%), Positives = 103/182 (56%), Gaps = 5/182 (2%)

Query: 463 RHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLERERER 522
           + A+E R+++  + A   +  Q   +ER  +Q  +ERL    +Q+++ EE  +    +++
Sbjct: 75  KRAEEQRKKKEQQQAEELQQKQAAEQER-LKQLEKERL-AAQEQKKQAEEAAKQAALKQK 132

Query: 523 EREE---KEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAV 579
           + EE   K     + + E E  R     ++ A +A ++A  EA ++AAAEA+ KAE  A 
Sbjct: 133 QAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAA 192

Query: 580 DKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERAS 639
            KA A A+++AE  A ++A AEA+++AAAEA+  A +AAAEA+  A   A  K A + A+
Sbjct: 193 AKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAA 252

Query: 640 VA 641
             
Sbjct: 253 AK 254

Length = 387

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 84.1 bits (208), Expect = 3e-17
 Identities = 64/205 (31%), Positives = 112/205 (54%), Gaps = 10/205 (4%)

Query: 491 ATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIE--KER 548
             QQ  + +  ++   +++ E Q++LE++ E   +++  E+ R ++ ++RA   +  K+ 
Sbjct: 48  VAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQA 107

Query: 549 EKARQAVERATR---EARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARER 605
           E+A +  E   +   EA+ + AAEA+ KAE  A  KA   A+++AE  A  +A AEA+ +
Sbjct: 108 EQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAK-K 166

Query: 606 AAAEARERAE---RAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASE 662
            AAEA+++AE   +A AEA+ +A AE  + +A    + A  EA A   AE AA   A +E
Sbjct: 167 KAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAAAEAE 226

Query: 663 ARERAAAEARERAAAAARANQNQQK 687
            +    AE  +    A+ +N  +Q 
Sbjct: 227 RKA-DEAELGDIFGLASGSNAEKQG 250

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 82.5 bits (204), Expect = 1e-16
 Identities = 64/197 (32%), Positives = 110/197 (55%), Gaps = 13/197 (6%)

Query: 476 AARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIE 535
           A R+ E  +   +++A +   Q++   E ++ ++ E++R   +E++++ EE  ++    +
Sbjct: 74  AKRAEEQRKKKEQQQAEEL--QQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQ 131

Query: 536 KEKERAREIEKEREKAR-QAVERATREARERAAAEARLKAERAAVDKANAAARERAERAA 594
           K+ E A        KA+ +A  +    A ++AAAEA+ KAE  A  KA A A+++AE  A
Sbjct: 132 KQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEA 191

Query: 595 VQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERA 654
             +A AEA+++A AEA    ++AAAEA+++A AEA+   A+         AEA   AE+A
Sbjct: 192 AAKAAAEAKKKAEAEA---KKKAAAEAKKKAAAEAKAAAAKA-------AAEAKAAAEKA 241

Query: 655 AVQRAASEARERAAAEA 671
           A  +AA +A    AA  
Sbjct: 242 AAAKAAEKAAAAKAAAE 258

Length = 387

>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional

 Score = 81.9 bits (203), Expect = 7e-16
 Identities = 81/261 (31%), Positives = 112/261 (42%), Gaps = 49/261 (18%)

Query: 462 FRHAK---EMRERESFKAARSRESVQPDR-EERATQQDAQERLDREMQQRE----KGEEQ 513
           +R AK      E+E  KA  ++      R E R      Q RL+RE   RE    K  E 
Sbjct: 431 YRQAKAEIRAIEQEKKKAEEAKA-----RFEAR------QARLEREKAAREARHKKAAEA 479

Query: 514 RRLERER------EREREEKEREKKRIEKEKER---------AREIEKEREKARQAVERA 558
           R  + +        R + +K    + I  +            ARE  K + +ARQA ++A
Sbjct: 480 RAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQA 539

Query: 559 TREARER----AAAEARLKAERAAVDKANAAARERAE--RAAVQRAQAEARERAAAEARE 612
              A  +    AAA AR KA++AA   ANA A E  +  +AAV  A A A+ + AA+   
Sbjct: 540 AAAADPKKAAVAAAIARAKAKKAAQQAANAEAEEEVDPKKAAVAAAIARAKAKKAAQQ-- 597

Query: 613 RAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEAR 672
               AA+   E   AE   K+A   A++AR +A   ++AE+ A          R AA A 
Sbjct: 598 ----AASAEPEEQVAEVDPKKAAVAAAIARAKA---KKAEQQANAEPEEPVDPRKAAVAA 650

Query: 673 ERAAAAARANQNQQKNDNDLE 693
             A A AR    QQ N    E
Sbjct: 651 AIARAKARKAAQQQANAEPEE 671

Length = 695

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 75.8 bits (186), Expect = 2e-14
 Identities = 63/217 (29%), Positives = 119/217 (54%), Gaps = 15/217 (6%)

Query: 497 QERLDREMQQREKGEEQRRLERERERERE-EKEREKKRIEKEKERAREIEKEREKARQAV 555
           Q+R  +E Q  E+ + ++  E+ER ++ E E+ + +++ ++ +E  ++ + E+++  +  
Sbjct: 79  QQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQA 138

Query: 556 ERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAE 615
            +A  E +++A A     A  AA  KA A A+++AE AA           AA EA+ +AE
Sbjct: 139 RKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAK----------AAEEAKAKAE 188

Query: 616 RAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERA 675
            AAA+ +  A A+A  ++A+  A      A+A ++AE AA ++AA+E ++ AA    ++A
Sbjct: 189 AAAAKKKAEAEAKAAAEKAKAEAEAK---AKAEKKAEAAAEEKAAAEKKKAAAKAKADKA 245

Query: 676 AAAARANQNQQKNDNDLESFFSMSSRPSSAPRPRANT 712
           AAAA+A + ++     L+  F   S   +AP+     
Sbjct: 246 AAAAKAAE-RKAAAAALDDIFGGLSSGKNAPKTGGGA 281

Length = 387

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 77.5 bits (190), Expect = 3e-14
 Identities = 80/388 (20%), Positives = 164/388 (42%), Gaps = 22/388 (5%)

Query: 444  AAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDRE 503
            A   A A K+  + A+     AK   E  + +A  + E  +   +++   +   +   ++
Sbjct: 1327 AKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK 1386

Query: 504  MQQREKGEEQRRLEREREREREE---KEREKKRIEK------EKERAREIEKEREKARQA 554
             ++++K +E ++   E +++ +E       KK+ ++      EK++A E +K+ E+A++A
Sbjct: 1387 AEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKA 1446

Query: 555  VERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERA 614
             E   +    + A EA+ KAE A          E A++A   + +AE  ++ A EA++ A
Sbjct: 1447 DEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAA 1506

Query: 615  ERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARER 674
            E A  +A E   AE  +K    + +    +A+  ++AE         +A E   AE +++
Sbjct: 1507 E-AKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKK 1565

Query: 675  AAAAARANQNQQKNDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPARRT--S 732
            A  A +A +++       E           A   R      L++ + K   E A++   +
Sbjct: 1566 AEEAKKAEEDKNMALRKAEEA-------KKAEEARIEEVMKLYEEEKKMKAEEAKKAEEA 1618

Query: 733  VGASSNMRKASSTTNIVDDLSSIFGAAGSSAGEFQDVEGETE---ERRRARLERHQRTQE 789
               +  ++KA      V+ L          A E +  E E +        + E  ++  E
Sbjct: 1619 KIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE 1678

Query: 790  RAAKALAEKNERDLQAQRDQAERHRIAE 817
             A KA  ++ +     +++  E  +  E
Sbjct: 1679 EAKKAEEDEKKAAEALKKEAEEAKKAEE 1706

Length = 2084

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 74.5 bits (183), Expect = 4e-14
 Identities = 65/244 (26%), Positives = 105/244 (43%), Gaps = 13/244 (5%)

Query: 434 PSPEDVESSIAAA---SAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREER 490
           P P      I A      A  ++A    + K   AK+ +ER+  K  +  E  +  R   
Sbjct: 29  PEPGGGGEIIQAVLVDPGAVAQQANRIQQQKKPAAKKEQERQK-KLEQQAEEAEKQRAAE 87

Query: 491 ATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREK 550
             +Q   E+     +  ++ E+  +   E++++ EE    K +   E +   E E E++ 
Sbjct: 88  QARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEA---KAKQAAEAKAKAEAEAEKKA 144

Query: 551 ARQAVERATREARERAAAEARLKAERA-----AVDKANAAARERAERAAVQRAQAEARER 605
             +A ++A  EA+ +AAAEA+ KA  A     A  KA A A+ +A+    +     A+ +
Sbjct: 145 KEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAK 204

Query: 606 AAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARE 665
           AAAEA  +AE A A A   A AE +  EA              ++   A    A SE  +
Sbjct: 205 AAAEAAAKAE-AEAAAAAAAEAERKADEAELGDIFGLASGSNAEKQGGARGNAAGSEVDK 263

Query: 666 RAAA 669
            AA 
Sbjct: 264 YAAI 267

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 73.4 bits (181), Expect = 9e-14
 Identities = 53/243 (21%), Positives = 97/243 (39%), Gaps = 17/243 (6%)

Query: 452 KEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGE 511
           +E +   E      + ++E +  +A   RE  +  REE     + +     E ++RE+ E
Sbjct: 92  EERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREE 151

Query: 512 EQRRLEREREREREEKEREKKRIEKEKERAREIEKEREK-ARQAVERATRE------ARE 564
           E + LE +RE+   E+ERE +R E+++E+ RE+ + R +      ER   +       +E
Sbjct: 152 ELKILEYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAEDEREELDELRADLYQE 211

Query: 565 RAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARER 624
               + R K +  A  +       +  R      + E  +   AE            RER
Sbjct: 212 EYERKERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAE--------RER 263

Query: 625 ANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQN 684
              +  E E  E+ +  +      +   R  +++   E  ER AAE  E      R  + 
Sbjct: 264 MLEKQAEDEELEQENAEK--RRMKRLEHRRELEQQIEEKEERRAAEREEELEEGERLREE 321

Query: 685 QQK 687
           + +
Sbjct: 322 EAE 324

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 72.6 bits (179), Expect = 2e-13
 Identities = 54/247 (21%), Positives = 91/247 (36%), Gaps = 16/247 (6%)

Query: 448 AAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQ-- 505
              M E ++R + +     + +     K  + RE +    EER  +++ ++  +RE +  
Sbjct: 98  REQMDEIIERIQEEDEAEAQEKRE---KQKKLREEIDEFNEERIERKEEEKEREREEELK 154

Query: 506 ----QREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATRE 561
               QREK E +   E ER   +EEKERE  R+  ++E A +  +E ++ R         
Sbjct: 155 ILEYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAEDEREELDELRA------DL 208

Query: 562 ARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEA 621
            +E    + R K +  A  +       +  R      + E  +   AE     ER   + 
Sbjct: 209 YQEEYERKERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQ 268

Query: 622 RERANAEAREKEARERASVA-RTEAEALQRAERAAVQRAASEARERAAAEARERAAAAAR 680
            E    E    E R    +  R E E     +         E  E       E A   AR
Sbjct: 269 AEDEELEQENAEKRRMKRLEHRRELEQQIEEKEERRAAEREEELEEGERLREEEAERQAR 328

Query: 681 ANQNQQK 687
             + +Q+
Sbjct: 329 IEEERQR 335

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 74.3 bits (183), Expect = 2e-13
 Identities = 50/240 (20%), Positives = 94/240 (39%), Gaps = 12/240 (5%)

Query: 453 EAMDRAEAKFRHAKEMRE--RESFKAARSRESVQPDREERATQQ--DAQERLDREMQQRE 508
           E ++  E K    ++     R+  +             E  ++Q    ++ L R   + E
Sbjct: 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVE 743

Query: 509 KGEEQ-RRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAA 567
           + EE+  +L +E      E E  ++R+E+ +E   E E E E+    +E+   E     A
Sbjct: 744 QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL---KA 800

Query: 568 AEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANA 627
               L   RA +   N  A    ER      +  A ER   +  E+ E  + +     + 
Sbjct: 801 LREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI---ESL 857

Query: 628 EAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQK 687
            A  +E  E      +E EAL   ERA+++ A +  R      + E     ++ ++ +++
Sbjct: 858 AAEIEELEELIEELESELEALL-NERASLEEALALLRSELEELSEELRELESKRSELRRE 916

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 71.4 bits (175), Expect = 1e-12
 Identities = 51/230 (22%), Positives = 82/230 (35%), Gaps = 9/230 (3%)

Query: 458 AEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLE 517
           AE +   A     R++       E     +    T++      + E +      E RR E
Sbjct: 230 AEKETEIAIAEANRDAKLVELEVEQQPAGKTAEQTREVKIILAETEAEVAAWKAETRR-E 288

Query: 518 REREREREEKEREKKRIEKEKE-------RAREIEKEREKARQAVERATREARERAAAEA 570
            E+     E+  ++++ + E+E        ARE+     + ++  E   +E R      A
Sbjct: 289 AEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIERQKETELEPQE-RSYFINAA 347

Query: 571 RLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAR 630
           + +A+  A   AN A    A+  A      E  E   AE       A A  +E+     R
Sbjct: 348 QRQAQEEAKAAANIAEAIGAQAEAAVETARETEEAERAEQAALVAAAEAAEQEQVEIAVR 407

Query: 631 EKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAAR 680
            + A+  A     E +A   A R   +  A   R  A A      AAAA 
Sbjct: 408 AEAAKAEAEAQAAEIKAEAEAIREKGKAEAEAKRALAEAIQVLGDAAAAE 457

Length = 548

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 71.3 bits (174), Expect = 2e-12
 Identities = 64/257 (24%), Positives = 133/257 (51%), Gaps = 14/257 (5%)

Query: 444  AAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDRE 503
            A  +  A ++A  +AE   R A E+++ E  K A   +  +  ++    ++ A+E    +
Sbjct: 1260 ARMAHFARRQAAIKAEEA-RKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAD 1318

Query: 504  MQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREAR 563
              +++  E +++ +  +++  E K+  +    + +  A E E   EKA +A E+   EA+
Sbjct: 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKA-EAAEKKKEEAK 1377

Query: 564  ERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERA-----AAEARERAERAA 618
            ++A A  +   E+   D+A   A E  ++A   +  A A+++A      AE +++A+ A 
Sbjct: 1378 KKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAK 1437

Query: 619  AEARERANAEAREKEARE--RASVARTEAEALQRAE----RAAVQRAASEARERAAAEAR 672
             +A E   A+  +K+A E  +A  A+ +AE  ++A+    +A   + A EA+++ A EA+
Sbjct: 1438 KKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKK-AEEAK 1496

Query: 673  ERAAAAARANQNQQKND 689
            ++A  A +A + ++K D
Sbjct: 1497 KKADEAKKAAEAKKKAD 1513

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 70.6 bits (172), Expect = 3e-12
 Identities = 80/336 (23%), Positives = 152/336 (45%), Gaps = 14/336 (4%)

Query: 365  RPTRVSKLETGNARKKANEYSSFSNS--PQCTHSPKSTRAGTRSSAASQIDEL--EDFAM 420
                V + E      K  ++ +  ++   + T          + +   + +E    + A 
Sbjct: 1062 AKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAK 1121

Query: 421  SRSWNNVNEYGEVPSPEDVESSIAAASAA-AMKEAMDRAEAKFRHAKEMRERESFK---A 476
             ++  +  +  E    ED   +  A  A  A +  + R     R A+E R+ E  K   A
Sbjct: 1122 KKA-EDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEA 1180

Query: 477  ARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEK 536
            AR  E V+   E R  +   +    R+ ++  K EE R+ E  ++ E  +K  E K+  +
Sbjct: 1181 ARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAE 1240

Query: 537  EKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQ 596
            E ++A E     E  +    R    AR +AA +A    +   + KA    +    + A +
Sbjct: 1241 EAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEE 1300

Query: 597  RAQAEARERAAAEAR--ERAERAAAEARERANA-EAREKEARERASVARTEAEALQRAER 653
            + +A+  ++ A EA+  + A++ A EA+++A+A + + +EA++ A  A+ EAEA      
Sbjct: 1301 KKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAE 1360

Query: 654  AAVQRAASEARERAAAEARERAAAAARANQNQQKND 689
            AA ++A  EA E+   EA+++A AA +  + ++K D
Sbjct: 1361 AAEEKA--EAAEKKKEEAKKKADAAKKKAEEKKKAD 1394

Length = 2084

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 67.6 bits (166), Expect = 7e-12
 Identities = 64/236 (27%), Positives = 108/236 (45%), Gaps = 19/236 (8%)

Query: 459 EAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLER 518
             K R AK  +ER++    + R   +   EER   +  +E   + + + E+ E +R+ ER
Sbjct: 10  NEKLRAAKVNKERDAQIEEKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEER 69

Query: 519 EREREREEK---EREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAE 575
              R   ++   EREK+R E+ +ER +E E+  E   +  E    EA+E+   + +L+ E
Sbjct: 70  REGRAVLQEQIEEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREE 129

Query: 576 RAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEAR 635
              +D+ N    ER  +   +  + E   +     RE+AER      ER   E +E++ R
Sbjct: 130 ---IDEFNEERIER--KEEEKEREREEELKILEYQREKAEREEEREAER--RERKEEKER 182

Query: 636 ERASVARTEAEALQRAE-----RAAVQRAASEARERAAAEARERAAAAARANQNQQ 686
           E A +   + EA    E     RA + +   E +ER     +E+  A  R  Q Q+
Sbjct: 183 EVARLRAQQEEAEDEREELDELRADLYQEEYERKER----QKEKEEAEKRRRQKQE 234

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 68.9 bits (169), Expect = 8e-12
 Identities = 46/260 (17%), Positives = 91/260 (35%), Gaps = 18/260 (6%)

Query: 437 EDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQ----PDREERAT 492
            ++E ++       ++E ++  + + + A+E  E  + +     E ++       E    
Sbjct: 223 RELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEE 282

Query: 493 QQDAQERL--------DREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREI 544
            ++ Q+ L          E Q++   E    LER+ E    + E  + ++++  E   E+
Sbjct: 283 IEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAEL 342

Query: 545 EKE----REKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQA 600
           E++    +E+             E    E+RL+     ++   +   +   + A    + 
Sbjct: 343 EEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEI 402

Query: 601 EARERAAAEARERAERAAAEARE--RANAEAREKEARERASVARTEAEALQRAERAAVQR 658
           E  E       +R ER   E  E  +   EA  KE +        E E LQ       + 
Sbjct: 403 ERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEA 462

Query: 659 AASEARERAAAEARERAAAA 678
                 E   AE    AA  
Sbjct: 463 LEELREELEEAEQALDAAER 482

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 69.0 bits (169), Expect = 9e-12
 Identities = 50/231 (21%), Positives = 83/231 (35%), Gaps = 5/231 (2%)

Query: 457 RAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLD--REMQQREKGEEQR 514
            AE K    +E  ER         + ++    +    +  QE     RE++      + +
Sbjct: 176 EAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLK 235

Query: 515 RLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKA 574
            L +E E   EE  R ++ +E+ +E   E EKE E+ +  +E    E  E       LK 
Sbjct: 236 ELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKE 295

Query: 575 ERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEA 634
           E   ++   +  RER E    +  + E R     E +E+ E    E  ER       ++ 
Sbjct: 296 EIEELEGEISLLRERLEELENELEELEERLE---ELKEKIEALKEELEERETLLEELEQL 352

Query: 635 RERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQ 685
                 A+ E E    A    ++      RE  A    E A       + +
Sbjct: 353 LAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELK 403

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 69.0 bits (169), Expect = 9e-12
 Identities = 40/241 (16%), Positives = 76/241 (31%), Gaps = 3/241 (1%)

Query: 452 KEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQ--REK 509
           +E + R E +    +E  E    +    +  ++  REE    Q+    L  E+++   E 
Sbjct: 245 EEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEI 304

Query: 510 GEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAE 569
              + RLE       E +ER ++  EK +    E+E+      +  +        +   E
Sbjct: 305 SLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELE 364

Query: 570 ARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARER-ANAE 628
            +L A    +++   A RE       + A+            E  E       ER  + +
Sbjct: 365 EKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLK 424

Query: 629 AREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKN 688
              KE        +TE E L        ++           E              ++ +
Sbjct: 425 EELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELS 484

Query: 689 D 689
            
Sbjct: 485 S 485

Length = 1163

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 67.1 bits (163), Expect = 4e-11
 Identities = 47/203 (23%), Positives = 95/203 (46%), Gaps = 7/203 (3%)

Query: 450  AMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREK 509
            A +  ++     +   K+M+  E+ KA  ++   +  ++    ++  ++   +E ++++K
Sbjct: 1589 AEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK 1648

Query: 510  GEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAE 569
             EE +   +  E  + +   E K+ E++K++A E +K  E  ++A E   +EA E   AE
Sbjct: 1649 AEELK---KAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE 1705

Query: 570  ARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEA 629
               K E     KA    +   E     + +AE  ++ A E +++AE A  +  E+     
Sbjct: 1706 ELKKKEAEEKKKAEELKKAEEEN----KIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAH 1761

Query: 630  REKEARERASVARTEAEALQRAE 652
             +KE  ++A   R E EA+   E
Sbjct: 1762 LKKEEEKKAEEIRKEKEAVIEEE 1784

Length = 2084

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 64.9 bits (159), Expect = 5e-11
 Identities = 58/249 (23%), Positives = 98/249 (39%), Gaps = 14/249 (5%)

Query: 445 AASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREM 504
                 M+E   +A A+    +  R+ E  +     +    +RE+R  ++  +   +RE 
Sbjct: 41  RRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQEREQ 100

Query: 505 QQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARE 564
                 E   R++ E E E +EK  ++K++ +E +   E   ER + ++  +   RE   
Sbjct: 101 MD----EIIERIQEEDEAEAQEKREKQKKLREEIDEFNE---ERIERKEEEKEREREEEL 153

Query: 565 RAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARER 624
           +     R KAER    +A    R+  E+          +E A  E  E  E  A   +E 
Sbjct: 154 KILEYQREKAEREEEREAERRERKE-EKEREVARLRAQQEEAEDEREELDELRADLYQEE 212

Query: 625 ANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQN 684
              + R+KE  E     R + E LQRA    ++      +E    E R    A       
Sbjct: 213 YERKERQKEKEEAEKRRRQKQE-LQRAREEQIEE-----KEERLQEERAEEEAERERMLE 266

Query: 685 QQKNDNDLE 693
           +Q  D +LE
Sbjct: 267 KQAEDEELE 275

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 66.3 bits (162), Expect = 5e-11
 Identities = 44/246 (17%), Positives = 84/246 (34%), Gaps = 9/246 (3%)

Query: 453 EAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEE 512
             ++    K     +  + E        E ++   EE   Q +  +R    +++  +  +
Sbjct: 677 AELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQ 736

Query: 513 QRR--LEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEA 570
            R   LE E E   EE E  ++R+E+ +E    +E+   K ++ +E    + +       
Sbjct: 737 SRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELE 796

Query: 571 RLKAERAAVDKANAAARERAERAAVQRAQAEAR-ERAAAEARERAERAAAEARERANAEA 629
            L+ E    ++   A     E    +R + E   E    E  E  E+      E    E 
Sbjct: 797 ELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEK 856

Query: 630 REKEARERASVARTEAEALQ------RAERAAVQRAASEARERAAAEARERAAAAARANQ 683
             +E +E       E E L+        E+  ++    E     A    E      R  +
Sbjct: 857 ELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEE 916

Query: 684 NQQKND 689
            + K +
Sbjct: 917 LEAKLE 922

Length = 1163

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 66.2 bits (162), Expect = 6e-11
 Identities = 65/273 (23%), Positives = 100/273 (36%), Gaps = 28/273 (10%)

Query: 437 EDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDA 496
           E+   +  A +  A +   + A+     A+E+RE    +AA     ++  RE    +++ 
Sbjct: 331 EECRVAAQAHNEEA-ESLREDADDLEERAEELRE----EAAELESELEEAREAVEDRREE 385

Query: 497 QERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVE 556
            E L+ E+++  +      ++     +  E+ RE      E++  RE E E E   +   
Sbjct: 386 IEELEEEIEELRERFGDAPVDLGNAEDFLEELRE------ERDELREREAELEATLRTAR 439

Query: 557 RATREARERAAA----EARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARE 612
               EA     A    E     E +   +     RER E    +    E       E  E
Sbjct: 440 ERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLE 499

Query: 613 RAERAAAEARE-------RANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARE 665
           RAE               R + E    E RE     R  AE L+  ERAA   A +E + 
Sbjct: 500 RAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELR--ERAAELEAEAEEKR 557

Query: 666 RAAAEARERAAAAARA----NQNQQKNDNDLES 694
            AAAEA E A  A       N    +    +ES
Sbjct: 558 EAAAEAEEEAEEAREEVAELNSKLAELKERIES 590

Length = 880

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 65.3 bits (160), Expect = 8e-11
 Identities = 38/156 (24%), Positives = 48/156 (30%), Gaps = 1/156 (0%)

Query: 536 KEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAV 595
           KE             A  A           AA +A   A  AA  KA AA   RA  AA 
Sbjct: 56  KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115

Query: 596 QRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAA 655
             A +      A E RER E A   A  +A     +     RA  A    E  +R ER  
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEE-ERDERRR 174

Query: 656 VQRAASEARERAAAEARERAAAAARANQNQQKNDND 691
                    E    E   R       +   +++  +
Sbjct: 175 RGDREDRQAEAERGERGRREERGRDGDDRDRRDRRE 210

Length = 672

>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 64.5 bits (157), Expect = 1e-10
 Identities = 47/189 (24%), Positives = 70/189 (37%), Gaps = 9/189 (4%)

Query: 505 QQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARE 564
           +  +  ++    E E E+E E    E  R  K  E   E +   + A Q  E     A  
Sbjct: 215 RIAQVLQDAEIAENEAEKETEIAIAEANRDAKLVELEVEQQPAGKTAEQTREVKIILAET 274

Query: 565 -----RAAAEARLKAERAAVDKANAAARERAER-AAVQRAQAEARERAAAEARERAERAA 618
                   AE R +AE+A +    A   E+A+    VQ A+A           ER +   
Sbjct: 275 EAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIERQKETE 334

Query: 619 AEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAA 678
            E +ER+      +   +  + A         A+  A   A   ARE   AE  E+AA  
Sbjct: 335 LEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAEA---AVETARETEEAERAEQAALV 391

Query: 679 ARANQNQQK 687
           A A   +Q+
Sbjct: 392 AAAEAAEQE 400

Length = 548

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 65.5 bits (160), Expect = 1e-10
 Identities = 45/243 (18%), Positives = 89/243 (36%), Gaps = 6/243 (2%)

Query: 440 ESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQER 499
           E     +    ++E ++  + +    KE  E    + +  RE ++    E    ++  E 
Sbjct: 268 EIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEE 327

Query: 500 LDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERAT 559
           L  +++  ++ E + R     E E+   E E+ + E E++ +  +E+  E      E   
Sbjct: 328 LKEKIEALKE-ELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELA 386

Query: 560 REARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAA 619
               E A     L+  +  ++       ER ER + +    +   +      E  +    
Sbjct: 387 ELEAELAEIRNELEELKREIES----LEERLERLSERLEDLKEELKELEAELEELQTELE 442

Query: 620 EAR-ERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAA 678
           E   E    E + +E R+R      E   LQ   +   +  +S        EA +RA+  
Sbjct: 443 ELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQG 502

Query: 679 ARA 681
            RA
Sbjct: 503 VRA 505

Length = 1163

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 65.2 bits (158), Expect = 2e-10
 Identities = 59/246 (23%), Positives = 114/246 (46%), Gaps = 14/246 (5%)

Query: 440  ESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKA----ARSRESVQPDREERATQQD 495
            E+   A  A    EA  +AE   + A E ++    K     A+  E  +   E +  ++ 
Sbjct: 1474 EAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEA 1533

Query: 496  AQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKE---RAREIEKEREKAR 552
             +    ++ ++++K +E ++ E  ++ E ++K  E K+ E++K    R  E  K+ E+AR
Sbjct: 1534 KKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEAR 1593

Query: 553  QAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARE 612
                    E  ++  AE   KAE A +        E  ++   Q  + EA E+  AE  +
Sbjct: 1594 IEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELK 1653

Query: 613  RAE-----RAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERA 667
            +AE     +AA EA++    + + +EA++     +  AEAL++    A  + A E +++ 
Sbjct: 1654 KAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEA--KKAEELKKKE 1711

Query: 668  AAEARE 673
            A E ++
Sbjct: 1712 AEEKKK 1717

Length = 2084

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 64.5 bits (158), Expect = 2e-10
 Identities = 31/172 (18%), Positives = 52/172 (30%), Gaps = 5/172 (2%)

Query: 520 REREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAV 579
           +E                   AR   +    ARQA + A   A  +A A    +A  AA 
Sbjct: 56  KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115

Query: 580 DKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERAS 639
            +A +A      R   +R +A  R  A        + A     + A     E+    R  
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR 175

Query: 640 VARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDND 691
             R +     R   A               + R+R     + ++ +++   D
Sbjct: 176 GDRED-----RQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRD 222

Length = 672

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 65.1 bits (159), Expect = 2e-10
 Identities = 47/237 (19%), Positives = 91/237 (38%), Gaps = 21/237 (8%)

Query: 438 DVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQ 497
           D +   A      ++E ++R +      ++  ER           ++ +RE+    Q   
Sbjct: 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLER-----------LRREREKAERYQALL 217

Query: 498 ERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVER 557
           +   RE +  E  +E+  LER++E    +    ++ +EK  E   E+EK  E+  Q +E 
Sbjct: 218 KEK-REYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEE 276

Query: 558 ATREARERAAAEAR--------LKAERAAVDKANAAARERAERAAVQRAQAEA-RERAAA 608
             ++ ++    E          L+AE A+++++ A      E A  + A+ EA  ++  A
Sbjct: 277 LNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLA 336

Query: 609 EARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARE 665
           E  E       E + R        E +E     R E E + +              +
Sbjct: 337 EIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREK 393

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 64.4 bits (157), Expect = 2e-10
 Identities = 48/280 (17%), Positives = 94/280 (33%), Gaps = 18/280 (6%)

Query: 405 RSSAASQIDELEDFAMSRSWNNVNEYGEVPSPEDVESSIAAASAAAMKEAMDRAEAKFRH 464
                 Q+ EL +           E  E+   E+++            EA++   A+   
Sbjct: 187 IEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEE 246

Query: 465 AKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLERERERER 524
            KE  E    +            E  + + +A +  + E+++ E+  E+   + ER  E 
Sbjct: 247 EKERLEELKARLL----------EIESLELEALKIREEELRELERLLEELEEKIERLEEL 296

Query: 525 E-EKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKAN 583
           E E E  ++ +E  +    E+E+  EK +   ER  +   +    E+ L+      ++  
Sbjct: 297 EREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELA 356

Query: 584 AAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVART 643
               ER +    +  + E     A E  ++ E    EA +    E  E  A         
Sbjct: 357 KLLEERLKELEERLEELEKELEKALERLKQLE----EAIQELKEELAELSAALEEIQEEL 412

Query: 644 EAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQ 683
           E    +  E   ++R   E  E       +     ++   
Sbjct: 413 EELEKELEE---LERELEELEEEIKKLEEQINQLESKELM 449

Length = 908

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 64.4 bits (156), Expect = 3e-10
 Identities = 59/260 (22%), Positives = 125/260 (48%), Gaps = 8/260 (3%)

Query: 440  ESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQER 499
            E +  A  A    E   +A+   + A+E ++ +  K        + D  ++A +   +  
Sbjct: 1454 EEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKAD 1513

Query: 500  LDREMQQREKGEEQRRLEREREREREEKEREKKRIEK----EKERAREIEKEREKARQAV 555
              ++ ++ +K +E ++ E  ++ +  +K  EKK+ ++    E+ +  E +K+ E+A++A 
Sbjct: 1514 EAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAE 1573

Query: 556  ER---ATREARE-RAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEAR 611
            E    A R+A E + A EAR++      ++      E A++A   + +AE  ++A  E +
Sbjct: 1574 EDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKK 1633

Query: 612  ERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEA 671
            +  +    EA E+  AE  +K   E    A  EA+  +  ++ A +   +E  E+ AAEA
Sbjct: 1634 KVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEA 1693

Query: 672  RERAAAAARANQNQQKNDND 691
             ++ A  A+  +  +K + +
Sbjct: 1694 LKKEAEEAKKAEELKKKEAE 1713

Length = 2084

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 63.2 bits (154), Expect = 6e-10
 Identities = 52/189 (27%), Positives = 79/189 (41%), Gaps = 11/189 (5%)

Query: 501 DREMQQREKGEEQRRLERERER-EREEKEREKKRIEKEKERAREIEKEREKARQAVERAT 559
                  E+  E   LE + E  E +  E EK   E  KE   E+E+E E+ R+ +E  +
Sbjct: 667 KTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKEL-EELEEELEQLRKELEELS 725

Query: 560 REARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAA 619
           R+        ARL+AE   +        ER  + + +  + EA      E  E AE   A
Sbjct: 726 RQISALRKDLARLEAEVEQL-------EERIAQLSKELTELEAEIEELEERLEEAEEELA 778

Query: 620 EA-RERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAA 678
           EA  E    EA+ ++ +E     R   + L RAE   +   A+  RER  +  R  AA  
Sbjct: 779 EAEAEIEELEAQIEQLKEELKALREALDEL-RAELTLLNEEAANLRERLESLERRIAATE 837

Query: 679 ARANQNQQK 687
            R    +++
Sbjct: 838 RRLEDLEEQ 846

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 62.9 bits (153), Expect = 6e-10
 Identities = 52/242 (21%), Positives = 78/242 (32%), Gaps = 18/242 (7%)

Query: 445 AASAAAMKEAMDRAEAKFRHAKEMR-ERESFKAARS----RESVQPDREERATQQDAQER 499
           AA    + E      A     + +  E     + RS             +  + +    R
Sbjct: 752 AAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELAR 811

Query: 500 LDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERAT 559
             R+        +Q R E ER+            +  + +    +    ++    +    
Sbjct: 812 AARKAAAAAAAWKQARRELERDAA-------DLDLPTDPDALEAVGLALKRFGDHLHTLE 864

Query: 560 REARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAA 619
              RE   A  R   +RA   +A + ARE AE AA  RA+A   E A+   R   E   A
Sbjct: 865 VAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARAEA---EEASLRLRTLEESVGA 921

Query: 620 EARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAA 679
              E     AR  E R   +    E   L  A   A +       +RA A+A     A A
Sbjct: 922 MVDE---IRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKRAEADATLDERAEA 978

Query: 680 RA 681
           R 
Sbjct: 979 RD 980

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 62.9 bits (152), Expect = 8e-10
 Identities = 59/265 (22%), Positives = 124/265 (46%), Gaps = 15/265 (5%)

Query: 440  ESSIAAASAAAMKEAMDRAEAKFRHAKEMRER--ESFKAARSRESVQPDREERATQQDAQ 497
            E+   A  A    EA  +AE   + A+E +++  E+ KA  +++  +  ++    ++ A+
Sbjct: 1435 EAKKKAEEAKKADEAKKKAEEA-KKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAE 1493

Query: 498  ERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVER 557
            E   +  + ++  E +++ +  ++ E  +K  E K+ E E ++A E +K  EK +    +
Sbjct: 1494 EAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE-EAKKADEAKKAEEKKKADELK 1552

Query: 558  ATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERA 617
               E ++    +   +A++A  DK  A  +    + A +    E  +    E + +AE A
Sbjct: 1553 KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA 1612

Query: 618  AAEARERANAEAREKEARERASVART---------EAEALQRAERAAVQRAASEARERAA 668
                  +  AE  +K   E+  V +          +AE L++AE     +AA EA++  A
Sbjct: 1613 KKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKK--A 1670

Query: 669  AEARERAAAAARANQNQQKNDNDLE 693
             E +++A  A +A ++++K    L+
Sbjct: 1671 EEDKKKAEEAKKAEEDEKKAAEALK 1695

Length = 2084

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 61.1 bits (148), Expect = 1e-09
 Identities = 54/195 (27%), Positives = 103/195 (52%), Gaps = 9/195 (4%)

Query: 448 AAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQR 507
           ++A K    R + + + A+E++ +++ +  R ++  +   + +  Q+ A+E   +   ++
Sbjct: 72  SSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQ 131

Query: 508 EKGEEQRRLEREREREREEKEREKKRIEKEKERAR-EIEKEREKARQAVERATREARERA 566
           ++ EEQ R     ++++ E  + K   E  K +A  E +K+ E+A +A E    EA+ +A
Sbjct: 132 KQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAE----EAKAKA 187

Query: 567 AAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERAN 626
            A A  K +  A  K   AA E+A+  A  +A+AE +  AAAE +  AE+  A A+ +A+
Sbjct: 188 EAAAA-KKKAEAEAK---AAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKAD 243

Query: 627 AEAREKEARERASVA 641
             A   +A ER + A
Sbjct: 244 KAAAAAKAAERKAAA 258

Length = 387

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 62.5 bits (151), Expect = 1e-09
 Identities = 96/440 (21%), Positives = 181/440 (41%), Gaps = 32/440 (7%)

Query: 397  PKSTRAGTRSSAASQIDELEDFAMSRSWNNVNEYGEVPSPEDVESSIAAASAAAMKEAMD 456
                    ++ A + + + E    S    + +   +  + E  E +   A  A   E   
Sbjct: 1051 DIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGK 1110

Query: 457  RAEAKFRHAKEMRERESFKA--ARSRESVQPDREERATQQDAQERLDREMQQREKGEEQR 514
              EA+     + +  ++ KA  AR  E  +   E R  +   +  + R+ +   K EE R
Sbjct: 1111 AEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEAR 1170

Query: 515  RLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVE----RATREARERAAAEA 570
            + E  ++ E   K  E ++ E E  +A +  K  E AR+A E       R+A +   AEA
Sbjct: 1171 KAEDAKKAEAARKAEEVRKAE-ELRKAEDARKA-EAARKAEEERKAEEARKAEDAKKAEA 1228

Query: 571  RLKAERAAVDKANAAARERAERAAVQRAQAEARERA---------AAEARERAERAAAEA 621
              KAE A  D   A   E        R   EAR            A EAR+  E   AE 
Sbjct: 1229 VKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEE 1288

Query: 622  RERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARA 681
            +++A+ EA++ E +++A  A+ +AE  ++A+ A  ++ A EA+++ A  A+++A  A +A
Sbjct: 1289 KKKAD-EAKKAEEKKKADEAKKKAEEAKKADEA--KKKAEEAKKK-ADAAKKKAEEAKKA 1344

Query: 682  NQNQQKNDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPARRTSVGASSNMRK 741
             +  +            +   + A   +   +    D+  K   E  +     A    +K
Sbjct: 1345 AEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK-----ADEAKKK 1399

Query: 742  ASSTTNIVDDLSSIFGAAGSSAGEFQDVEGETEERRRARLERHQRTQERAAKALAEKNER 801
            A       D+L      A ++  +  + + + EE+++A   + +  + + A    +K E 
Sbjct: 1400 AEEDKKKADELKK----AAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEE 1455

Query: 802  DLQAQ--RDQAERHRIAETL 819
              +A+  + +AE  + A+  
Sbjct: 1456 AKKAEEAKKKAEEAKKADEA 1475

Length = 2084

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 61.6 bits (150), Expect = 1e-09
 Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 11/220 (5%)

Query: 449 AAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQRE 508
           +A+++ + R EA+    +E   + S +       ++   E     ++     + E+++ E
Sbjct: 729 SALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE 788

Query: 509 KGEEQRRLERERERE-----REEKEREKKRIEKEKERAREIEKEREKARQAVERATREAR 563
              EQ + E +  RE     R E     +     +ER   +E+      + +E    +  
Sbjct: 789 AQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848

Query: 564 ERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARE 623
           E +     L AE   +++         E    +RA  E          E       E   
Sbjct: 849 ELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908

Query: 624 RANA------EAREKEARERASVARTEAEALQRAERAAVQ 657
           + +       E REK A+    +   E       ER + +
Sbjct: 909 KRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE 948

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 62.0 bits (151), Expect = 1e-09
 Identities = 44/227 (19%), Positives = 75/227 (33%), Gaps = 19/227 (8%)

Query: 487 REERATQQDAQERLDR-EMQQREKGEEQRRLEREREREREEKEREKKRIEKEKE----RA 541
            E     +  +E L+R E    E  ++  +LER+ E+    +E + +  E E      + 
Sbjct: 175 EEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKL 234

Query: 542 REIEKEREKARQAVERATRE----ARERAAAEARLKAERAAVDKANAAARERAERAAVQR 597
           +E+ KE E+  + + R   E      E   AE  ++  ++ +++      E  E     +
Sbjct: 235 KELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELK 294

Query: 598 AQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAV- 656
            + E  E   +  RER E    E  E        KE  E       E E L       + 
Sbjct: 295 EEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLA 354

Query: 657 ---------QRAASEARERAAAEARERAAAAARANQNQQKNDNDLES 694
                    +   S   E             A       +  N+LE 
Sbjct: 355 ELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEE 401

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 61.7 bits (150), Expect = 1e-09
 Identities = 50/240 (20%), Positives = 92/240 (38%), Gaps = 7/240 (2%)

Query: 437 EDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARS--RESVQPDREERATQQ 494
           E++E  + +   A  K   +  E + +      E E  +         +     E  + +
Sbjct: 761 EELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLE 820

Query: 495 DAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQA 554
             +ERL++E+++ E  EE   LE + +   EE E  +K +E+ KE   E+E E+E+    
Sbjct: 821 QRRERLEQEIEELE--EEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDE 878

Query: 555 VERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERA 614
           ++    E  E       L++E A + +     RER E    +  + E       E  E  
Sbjct: 879 LKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEE 938

Query: 615 ERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARER 674
                E       E  E+E      V      A++  E    +    +++     EA+E+
Sbjct: 939 YEDTLETELEREIERLEEEIEALGPVNL---RAIEEYEEVEERYEELKSQREDLEEAKEK 995

Length = 1163

>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 60.6 bits (147), Expect = 2e-09
 Identities = 49/241 (20%), Positives = 83/241 (34%), Gaps = 12/241 (4%)

Query: 450 AMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREK 509
           A  EA   A       +  +     + A   E  Q ++E +  +      +   + +R+K
Sbjct: 272 AETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIERQK 331

Query: 510 GEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAE 569
             E    ER       +++ +++             +       A E    E  E+AA  
Sbjct: 332 ETELEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAEAAVETARETEEAERAEQAALV 391

Query: 570 ARLKA---ERAAVDKANAAARERAERAAVQ-RAQAEARERAAAEARERAERAAAEA-RER 624
           A  +A   E+  +     AA+  AE  A + +A+AEA  R   +A   A+RA AEA +  
Sbjct: 392 AAAEAAEQEQVEIAVRAEAAKAEAEAQAAEIKAEAEA-IREKGKAEAEAKRALAEAIQVL 450

Query: 625 ANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQN 684
            +A A E         A  +A      E A   +     + R    A   + A       
Sbjct: 451 GDAAAAELFK------ALVQALPEVAEEAAQPMKNIDSEKVRVIGGANGGSTAGKVNAGG 504

Query: 685 Q 685
            
Sbjct: 505 L 505

Length = 548

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 60.8 bits (148), Expect = 2e-09
 Identities = 67/263 (25%), Positives = 108/263 (41%), Gaps = 32/263 (12%)

Query: 437 EDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDA 496
           + +++ I       + E ++  E++     E  ER   +  ++RE          T+ +A
Sbjct: 190 DQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARE----------TRDEA 239

Query: 497 QERLDREMQQREKGEEQRRLERERERERE-----EKERE--KKRIEKEKERAREIEKERE 549
            E L+      E+ EE   LE E E  RE     E+ERE   + +   +ER  E+E+ER+
Sbjct: 240 DEVLEE---HEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERD 296

Query: 550 KARQAVERATREARERAAAEARLKAERAAVDKANAAARERAE--RAAVQRAQAEARERAA 607
                         + A AEA ++A R  ++  +   R+R E  R A Q    EA E   
Sbjct: 297 DLLAEAGL------DDADAEA-VEARREELEDRDEELRDRLEECRVAAQAHNEEA-ESLR 348

Query: 608 AEARERAERAAAEARERANA-EAREKEARERASVARTEAEALQRAERAAVQRAASEARER 666
            +A +  ERA  E RE A   E+  +EARE     R E E L+       +R      + 
Sbjct: 349 EDADDLEERAE-ELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDL 407

Query: 667 AAAEARERAAAAARANQNQQKND 689
             AE         R    +++ +
Sbjct: 408 GNAEDFLEELREERDELREREAE 430

Length = 880

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 60.7 bits (148), Expect = 2e-09
 Identities = 35/215 (16%), Positives = 58/215 (26%), Gaps = 1/215 (0%)

Query: 477 ARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEK 536
                         A    A  R  R      + E+        + E     R       
Sbjct: 57  EARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAA 116

Query: 537 EKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQ 596
           E   A E   +  + R+  E A R A  +A       A  A  D A     E  +    +
Sbjct: 117 EAASAPE-AAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR 175

Query: 597 RAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAV 656
             + + +  A    R R E    +  +R   + RE+  R      R   +   R  R   
Sbjct: 176 GDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDR 235

Query: 657 QRAASEARERAAAEARERAAAAARANQNQQKNDND 691
           + A  +       +            + ++  D D
Sbjct: 236 RDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRD 270

Length = 672

>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated

 Score = 60.0 bits (145), Expect = 3e-09
 Identities = 57/206 (27%), Positives = 93/206 (45%), Gaps = 22/206 (10%)

Query: 498 ERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVE- 556
           E L +E  +R K E ++RL  +   E  + E E +  EK   +  ++  E  K R A   
Sbjct: 8   EDLKKEAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIEEAKRRAAAAA 67

Query: 557 --RATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERA 614
             +A   A+++      +  E  A  KA AAA  +A+ AA+ + + E  E    E +  A
Sbjct: 68  KAKAAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAA 127

Query: 615 ER-AAAEARERANAEAREKEA------------------RERASVARTEAEALQRAERAA 655
           +  AAA A+ +A A A++K                     + A+ A+ +A AL + + A 
Sbjct: 128 KAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKQKAAE 187

Query: 656 VQRAASEARERAAAEARERAAAAARA 681
                 E  E   A+A+ +AAAAA+A
Sbjct: 188 AGEGTEEVTEEEKAKAKAKAAAAAKA 213

Length = 430

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 60.5 bits (147), Expect = 4e-09
 Identities = 45/211 (21%), Positives = 86/211 (40%), Gaps = 4/211 (1%)

Query: 486 DREERATQQDAQERLDREMQQREKGEEQ-RRLEREREREREEKEREKKRIEKEKERAREI 544
             +  ++  + +  ++   ++ E+ EE+   LE+     R+E E  ++ +E+ ++   E+
Sbjct: 665 SAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL 724

Query: 545 EKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEA-R 603
            ++    R+ + R   E  +     A+L  E   ++       ER E A  + A+AEA  
Sbjct: 725 SRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784

Query: 604 ERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEA 663
           E   A+  +  E   A         A      E A+  R   E+L+R   A  +R   E 
Sbjct: 785 EELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL--ED 842

Query: 664 RERAAAEARERAAAAARANQNQQKNDNDLES 694
            E    E  E   + A   +  ++   +LES
Sbjct: 843 LEEQIEELSEDIESLAAEIEELEELIEELES 873

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated

 Score = 59.6 bits (144), Expect = 4e-09
 Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 17/174 (9%)

Query: 525 EEKEREKKRIEKEKERAREIEKEREKARQAVE--RATREARERAAAEARLKAERAAVDKA 582
           + ++  +   ++   RA+E  ++R  A+   E  +   E RE+  A  +         K 
Sbjct: 2   DPEKDLEDLKKEAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIEEAKR 61

Query: 583 NAAARERAERAAVQRAQAEARERAAAEARERAER-AAAEARERANAEAREKEA------- 634
            AAA  +A+ AA+ + + E  E    E + +A+  AAA A+ +A A A++K         
Sbjct: 62  RAAAAAKAKAAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTE 121

Query: 635 -------RERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARA 681
                   + A+ A+ +A AL + +R   +    E  E    +A+ +AAAAA+A
Sbjct: 122 EEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKA 175

Length = 430

>gnl|CDD|205692 pfam13514, AAA_27, AAA domain

 Score = 60.2 bits (146), Expect = 4e-09
 Identities = 79/379 (20%), Positives = 122/379 (32%), Gaps = 20/379 (5%)

Query: 444 AAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDRE 503
           AAA        M+   A+   A+E   R  FKA   R  +    + RA  + A     + 
Sbjct: 596 AAAGLPLTPAEMEDWLAERATAREQ-VRAYFKA---RAELDALLDRRARLRAALRAALKA 651

Query: 504 MQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREAR 563
           +     GEE   L     +  EE E++  R     ER R+ E+  E+A +  + A     
Sbjct: 652 VAIVLPGEELAELLELARQLLEEAEKQAARKASLDERLRDAERALEEAEERHDEAQSALE 711

Query: 564 ERAAAEARLKAERAAVDKANAA----ARERAERAAVQRAQAEARERAAAEARERAERAAA 619
                      E     +A+ A    A E  +    +   A+   +  A       R   
Sbjct: 712 AWQEQWYDALLEAGLGGRASPAGALDALELLQNIKEKLQAADDLRQRIAAMERDLARFEE 771

Query: 620 EARERANAEAREKEARERASVARTEAEALQRA-ERAAVQRAASEARERAAAEARERAAAA 678
           E    A A A E         AR   + L+RA + AA     +E  E A  E    AAAA
Sbjct: 772 EVEALAEAVAPEMLGTPADETARALKQRLKRARDTAAAAEKLAEEIEEAEKE-VSEAAAA 830

Query: 679 ARANQNQQKNDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPARRTSVGASSN 738
               + +      L +    +   +      A      +    K      R         
Sbjct: 831 LDEAEAR------LTALLRAARCTTIEELLAAVERSDTYRELRKRIAALERTLVRAGGGL 884

Query: 739 MRKASSTTNIVDDLSSIFGAAGSSAGEFQDVEGE----TEERRRARLERHQRTQERAAKA 794
             +A        D   +       A + +++E E     +E   A+ E  +      A  
Sbjct: 885 SLEALVAEAAALDPDELPARLEELARDIEELEEELNELAQEVGAAKQELARMDGGSTAAE 944

Query: 795 LAEKNERDLQAQRDQAERH 813
           L  + E  L   RD AER+
Sbjct: 945 LEAERESLLAQLRDLAERY 963

This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif. Length = 1118

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 60.2 bits (146), Expect = 5e-09
 Identities = 62/245 (25%), Positives = 83/245 (33%), Gaps = 36/245 (14%)

Query: 476 AARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIE 535
            AR R   + D    A   D    L RE+  R  G  QR L  E      ++        
Sbjct: 738 RARLRRIAELD-ARLAAVDDELAELAREL--RALGARQRALADELAGAPSDRSLRAAH-- 792

Query: 536 KEKERAREIEKEREKARQAVERATREAR-------------ERAAAEARLKAERAAVDKA 582
               RA E E++ E A + + RA R+A              ER AA+  L  +  A++  
Sbjct: 793 ---RRAAEAERQAESAERELARAARKAAAAAAAWKQARRELERDAADLDLPTDPDALEAV 849

Query: 583 NAA-------------ARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEA 629
             A             A      AA + A+  AR   A      A   AAEAR  A  EA
Sbjct: 850 GLALKRFGDHLHTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARAEA-EEA 908

Query: 630 REKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAA-ARANQNQQKN 688
             +      SV     E   R        A+        AEA   A  A  RA + + + 
Sbjct: 909 SLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKRAEA 968

Query: 689 DNDLE 693
           D  L+
Sbjct: 969 DATLD 973

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 59.7 bits (145), Expect = 6e-09
 Identities = 42/216 (19%), Positives = 82/216 (37%), Gaps = 9/216 (4%)

Query: 443 IAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDR 502
           I     A ++  ++  EA+    +   +  + + A   E ++  +EE  + +   E L+ 
Sbjct: 306 ILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEA 365

Query: 503 EMQQREKGEEQRRLERERER-EREEKEREKKRIEKEKERAREIEKEREKARQAVERATRE 561
           E+++ E   E+   + E  R +  + E +   +  E ER  E   ER + R+   +   E
Sbjct: 366 ELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERL-EARLERLEDRRERLQQEIE 424

Query: 562 ARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEA 621
              +   EA LK  +A +++      E  E       + E       E  E AE+A   A
Sbjct: 425 ELLKKLEEAELKELQAELEELEEELEELQEE----LERLEEALEELREELEEAEQALDAA 480

Query: 622 RERANAEAREKEARERASVARTEAEALQRAERAAVQ 657
                      ++ ER    +   E      +A ++
Sbjct: 481 ERELAQLQARLDSLER---LQENLEGFSEGVKALLK 513

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 58.5 bits (142), Expect = 1e-08
 Identities = 36/233 (15%), Positives = 72/233 (30%), Gaps = 9/233 (3%)

Query: 469 RERESFKAARSRESVQPDREERATQQDAQERLDREMQQ--REKGEEQRRLEREREREREE 526
           R RE  +     E ++    E         +   E+++   +  +E   L R+    R++
Sbjct: 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734

Query: 527 KEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAA 586
             R +  +E+ +ER  ++ KE  +    +E       E     A  +AE   ++      
Sbjct: 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL 794

Query: 587 RERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAE 646
           +E  +  A++ A  E R        E A              A E+   +        +E
Sbjct: 795 KEELK--ALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSE 852

Query: 647 ALQRAERA-----AVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLES 694
            ++           +        E    E      A A      ++   +L  
Sbjct: 853 DIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRE 905

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 58.3 bits (141), Expect = 1e-08
 Identities = 49/213 (23%), Positives = 71/213 (33%), Gaps = 14/213 (6%)

Query: 477 ARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLERERERE------REEKERE 530
            R    V  D E    + + +  +       E   + + +E E E++       + +E +
Sbjct: 213 RRRIAQVLQDAEIAENEAEKETEIAI----AEANRDAKLVELEVEQQPAGKTAEQTREVK 268

Query: 531 KKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARL----KAERAAVDKANAAA 586
               E E E A    + R +A QA   A +  +E  A   +     KA  A   +     
Sbjct: 269 IILAETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIE 328

Query: 587 RERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAE 646
           R++      Q               E    A       A AEA  + ARE     R E  
Sbjct: 329 RQKETELEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAEAAVETARETEEAERAEQA 388

Query: 647 ALQRAERAAVQRAASEARERAAAEARERAAAAA 679
           AL  A  AA Q     A    AA+A   A AA 
Sbjct: 389 ALVAAAEAAEQEQVEIAVRAEAAKAEAEAQAAE 421

Length = 548

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 58.5 bits (142), Expect = 1e-08
 Identities = 56/209 (26%), Positives = 85/209 (40%), Gaps = 23/209 (11%)

Query: 476 AARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIE 535
               RE V+    E    ++  E ++  +   E+ E+    E   ER  E +E  ++ I 
Sbjct: 470 IEEDRERVEELEAELEDLEEEVEEVEERL---ERAEDLVEAEDRIERLEERREDLEELIA 526

Query: 536 KEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAV 595
           + +E    IE++RE+A +  ERA         AEA  K E A      A A E AE A  
Sbjct: 527 ERRET---IEEKRERAEELRERA-----AELEAEAEEKREAA------AEAEEEAEEARE 572

Query: 596 QRAQAEARERAAAEARERAERAAAEARERANAEAREKEARER----ASVARTEAEALQ-- 649
           + A+  ++     E  E  ER        A+AE   +  RE+    A +     E L   
Sbjct: 573 EVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEK 632

Query: 650 RAERAAVQRAASEARERAAAEARERAAAA 678
           R  +  ++    EAR   A E +ERA   
Sbjct: 633 RERKRELEAEFDEARIEEAREDKERAEEY 661

Length = 880

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 58.5 bits (142), Expect = 1e-08
 Identities = 75/259 (28%), Positives = 102/259 (39%), Gaps = 31/259 (11%)

Query: 437 EDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDA 496
           E++E  I           +D   A+    +   ER+     R RE+     E  AT + A
Sbjct: 387 EELEEEIEELRERFGDAPVDLGNAEDFLEELREERD---ELREREA-----ELEATLRTA 438

Query: 497 QERLDREMQQREKG---------EEQRRLER--EREREREEKEREKKRIEKEKERAREIE 545
           +ER++      E G         E    +E   E     EE E E + +E+E E   E  
Sbjct: 439 RERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERL 498

Query: 546 KEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARER 605
           +  E   +A +R  R    R   E  +   R  +++    A E  ERAA   A+AE +  
Sbjct: 499 ERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKRE 558

Query: 606 AAAEARERAERAAAEARE-----RANAEAREKEARERASVARTEAEALQRAERAAVQRAA 660
           AAAEA E AE A  E  E         E  E   R R  +A    +A    ER   +R A
Sbjct: 559 AAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIA-DAEDEIERLREKREA 617

Query: 661 -----SEARERAAAEARER 674
                 E RER  AE RER
Sbjct: 618 LAELNDERRER-LAEKRER 635

Length = 880

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 58.6 bits (142), Expect = 1e-08
 Identities = 51/249 (20%), Positives = 87/249 (34%), Gaps = 13/249 (5%)

Query: 457 RAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLD-REMQQREKGEEQRR 515
               K    +   + E  +   S      +    A +++ +E     E+Q+ ++ EE  +
Sbjct: 173 SELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQ 232

Query: 516 LEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAE 575
                E    E E EK+R+E+ K R  EIE    +A +  E   RE  ER   E   K E
Sbjct: 233 EIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRE-LERLLEELEEKIE 291

Query: 576 R-AAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERAN-------- 626
           R   +++      E  E       + E          ER E+   +  +  +        
Sbjct: 292 RLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEE 351

Query: 627 AEAREKEARERASVARTEAEALQRAERAA--VQRAASEARERAAAEARERAAAAARANQN 684
                K   ER        E L++    A    +   EA +    E  E +AA     + 
Sbjct: 352 KNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEE 411

Query: 685 QQKNDNDLE 693
            ++ + +LE
Sbjct: 412 LEELEKELE 420

Length = 908

>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated

 Score = 57.7 bits (139), Expect = 1e-08
 Identities = 65/243 (26%), Positives = 103/243 (42%), Gaps = 22/243 (9%)

Query: 459 EAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLER 518
           EA  R  +E R+R   K       ++ +  E+       + +  E  +R      +    
Sbjct: 13  EAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIEEAKRRAAAAAKAKAA 72

Query: 519 EREREREEKEREKKRIEKEKERAREIEKEREKA---RQAVERATREARERAAAEARLKAE 575
              +++ E   E    EK K +A+     + KA    +     T E  E   A A+ KA 
Sbjct: 73  ALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAAKAKAA 132

Query: 576 RAAVDKANAAARERAERA--------------AVQRAQAEARERAAAEARERAERAAA-- 619
            AA  KA A A+++ E                A  +A A A+ +AAA A+++A  A    
Sbjct: 133 AAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKQKAAEAGEGT 192

Query: 620 -EARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAA 678
            E  E   A+A+ K A   A+ A+  A A Q+A +        +A+ +A A A+ +AAAA
Sbjct: 193 EEVTEEEKAKAKAKAAA--AAKAKAAALAKQKASQGNGDSGDEDAKAKAIAAAKAKAAAA 250

Query: 679 ARA 681
           ARA
Sbjct: 251 ARA 253

Length = 430

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 58.2 bits (141), Expect = 2e-08
 Identities = 44/241 (18%), Positives = 85/241 (35%), Gaps = 13/241 (5%)

Query: 437 EDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDA 496
           E ++S +        +   +  E + R  +   E ES + A ++   + +  E   Q   
Sbjct: 733 EQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQ 792

Query: 497 QERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVE 556
           +E  + E +  E       LERE E   + +ER ++ IE+ +E   E+E++ ++  + +E
Sbjct: 793 EELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELE 852

Query: 557 RATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAER 616
              +E  E       L+AE+  ++       E       ++ + E   R         + 
Sbjct: 853 ELEKELEELKEELEELEAEKEELEDELKELEE-------EKEELEEELRELESELAELKE 905

Query: 617 AAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAA 676
              + RER        E   +      E   L+       +       ER      E   
Sbjct: 906 EIEKLRERLE------ELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIE 959

Query: 677 A 677
           A
Sbjct: 960 A 960

Length = 1163

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 58.1 bits (141), Expect = 2e-08
 Identities = 72/247 (29%), Positives = 99/247 (40%), Gaps = 42/247 (17%)

Query: 467 EMRERESFKAARSRESVQPDREERATQQDAQ----------ERLDREMQQR-EKGEEQRR 515
           E RER S  A    E V  D+     Q  AQ          ERL+    +  E  EE  R
Sbjct: 166 EYRERAS-DARLGVERVLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIER 224

Query: 516 LEREREREREEKEREKKRIEKEKERAREI-----------------EKEREKARQAVERA 558
            E +RE+ RE ++   + +E+ +ER  E+                 E+ERE+  + V R 
Sbjct: 225 YEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEV-RD 283

Query: 559 TREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARER------AAAEARE 612
            RE  E    E       A +D A+A A E A R  ++    E R+R      AA    E
Sbjct: 284 LRERLEELEEERDDLLAEAGLDDADAEAVE-ARREELEDRDEELRDRLEECRVAAQAHNE 342

Query: 613 RAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEAR 672
            AE    +A +    E R +E RE A+   +E E  + A     +R   E  E    E R
Sbjct: 343 EAESLREDADDL---EERAEELREEAAELESELEEAREAVED--RREEIEELEEEIEELR 397

Query: 673 ERAAAAA 679
           ER   A 
Sbjct: 398 ERFGDAP 404

Length = 880

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 57.9 bits (140), Expect = 2e-08
 Identities = 55/240 (22%), Positives = 91/240 (37%), Gaps = 6/240 (2%)

Query: 444 AAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQ-ERLDR 502
            +      ++ ++ A  + R      E    +A   R  ++  +   A Q   + ER   
Sbjct: 281 LSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARA 340

Query: 503 EM-QQREKGEEQRRLERERE-REREEKEREKKRIEKEKERAREIEKEREKARQAVERATR 560
           +    +    + R+  RE E R  EE+ R  +   +  +  RE+   RE+  +A ERA  
Sbjct: 341 DAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLARAAERAGL 400

Query: 561 EARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAE 620
                A  +A L A+      A  A R+ A+R   QR++  A  R   +  +RAE   A 
Sbjct: 401 SPAHTAEPDAALAAQELQELGALDARRQDADRVIAQRSEQVALLRRRDDVADRAEATHAA 460

Query: 621 A---RERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAA 677
           A   R+  + EA +  AR   +      E  + A   A Q    E    A  +     A 
Sbjct: 461 ARARRDELDEEAEQAAARAELADEAVHREGARLAWVDAWQAQLRELTILAVDDQPGALAD 520

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

>gnl|CDD|205692 pfam13514, AAA_27, AAA domain

 Score = 58.2 bits (141), Expect = 2e-08
 Identities = 48/226 (21%), Positives = 76/226 (33%), Gaps = 24/226 (10%)

Query: 480 RESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRI----- 534
            + +  D E  A     +    +  + R   ++    E E    RE       +I     
Sbjct: 272 LDEISLDEELLAQAAAIEALHQQRGEYRNAEQDLPDREGEIANAREAAAALLAQIGPDAD 331

Query: 535 ----------EKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANA 584
                        KE   E+EK +E   QA++ A     ER     +++A+ AA+     
Sbjct: 332 EEAVESLRPSLAAKETVTELEKRKEALDQALKSARDALEERERELKQVRAQLAALPTVTV 391

Query: 585 AARERAERAAVQRA-QAEARERAAAEARERAERAAAEARERANAEAREKEA--------R 635
               RA  A   RA   +A   A  +    A+R  A+A  R      + E          
Sbjct: 392 PEPLRAALADALRAGDIDAALAALEQEVAVAKRELAQALSRLGLWRGDLEELVALPVPSA 451

Query: 636 ERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARA 681
           E+      EAE + +A+R    R      +    E + R   AA A
Sbjct: 452 EQVQAFLKEAEEIMQAKRQKRDRLLELEEDLETLELQLRHLDAAGA 497

This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif. Length = 1118

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 57.5 bits (140), Expect = 2e-08
 Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 11/162 (6%)

Query: 517 EREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREAR-ERAAAEARLKAE 575
           E E +R  EE ++E + I+KE     E ++E  K R   E+  RE R E    E RL  +
Sbjct: 37  EEEAKRILEEAKKEAEAIKKEALL--EAKEEIHKLRNEFEKELRERRNELQKLEKRLLQK 94

Query: 576 RAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEAR---ERANAEAREK 632
              +D+      +R E    +  + E +++   +  E  E    E     ER +    E 
Sbjct: 95  EENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAE- 153

Query: 633 EARERASVARTEAEALQRAERAA-VQRAASEARERAAAEARE 673
           EA+E   + + E EA  R E A  ++    EA+E A  +A+E
Sbjct: 154 EAKEIL-LEKVEEEA--RHEAAVLIKEIEEEAKEEADKKAKE 192

Length = 520

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 57.4 bits (139), Expect = 3e-08
 Identities = 41/242 (16%), Positives = 72/242 (29%), Gaps = 20/242 (8%)

Query: 438 DVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESF---KAARSRESVQPDREERATQQ 494
             E          +KE ++  E +    +E  E       +     E ++   E    + 
Sbjct: 280 REELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEEL 339

Query: 495 DAQERLDREMQQREKG-------EEQRRLEREREREREEKEREKKRIEKEKERAREIEKE 547
           + +E L  E++Q            E++             E  ++  E  +E   E+E E
Sbjct: 340 EERETLLEELEQLLAELEEAKEELEEKLSAL--------LEELEELFEALREELAELEAE 391

Query: 548 REKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAA 607
             + R  +E   RE         RL      + +         E    +  +        
Sbjct: 392 LAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEEL 451

Query: 608 AEARERAERAAAEA-RERANAEAREKEARERASVARTEAEALQRAERA-AVQRAASEARE 665
            E  E       E  RE A  +   +   +  S      + L+  +RA    RA  EA E
Sbjct: 452 EEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALE 511

Query: 666 RA 667
             
Sbjct: 512 SG 513

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 57.0 bits (138), Expect = 4e-08
 Identities = 61/339 (17%), Positives = 119/339 (35%), Gaps = 57/339 (16%)

Query: 495 DAQERLDR-EMQQREKGEEQRRLERERE-----REREEKEREKK------RIEKEKERAR 542
             +E LDR E    E   + + LER+ E     +E + + RE +      R+E+ +E   
Sbjct: 183 RTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELE 242

Query: 543 EIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEA 602
           E+++E ++A + +E  T E +E       L+ E + +++     ++     A + ++ E 
Sbjct: 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQ 302

Query: 603 RERAAAEARERAERAAAEA-RERANAEAREKEARERASVARTEAEALQ--------RAER 653
           +++   E     ER   E   +    E++  E  E  +    + E L+          E 
Sbjct: 303 QKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEE 362

Query: 654 AAVQRAASEARERAAAEARERAAAA-ARANQNQQKNDNDLESFFSMSSRPSSAPRPRANT 712
              +    E+R     E  E   +  A+        +N++E    + +R       R   
Sbjct: 363 LEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE---RLEARLERLEDRRERL 419

Query: 713 SDSLFDSQSKGGPEPARRTSVGASSNMRKASSTTNIVDDLSSIFGAAGSSAGEFQDVEGE 772
              + +   K   E A    + A     +                              E
Sbjct: 420 QQEIEELLKK--LEEAELKELQAELEELE------------------------------E 447

Query: 773 TEERRRARLERHQRTQERAAKALAEKNERDLQAQRDQAE 811
             E  +  LER +   E   + L E  +    A+R+ A+
Sbjct: 448 ELEELQEELERLEEALEELREELEEAEQALDAAERELAQ 486

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 57.0 bits (138), Expect = 4e-08
 Identities = 45/243 (18%), Positives = 94/243 (38%), Gaps = 3/243 (1%)

Query: 440 ESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQER 499
           +        AA++E +++ +++    +E  E    +    +E ++   EE  + ++A  +
Sbjct: 717 QLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAK 776

Query: 500 LDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERAT 559
           L  + +  E  E+++ L+ E E   EE E  ++R++  +     +E+ RE+  Q +E   
Sbjct: 777 L--KEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELE 834

Query: 560 REARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAA 619
            E  E       L+ E   ++K     +E  E    ++ + E   +   E +E  E    
Sbjct: 835 EEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELR 894

Query: 620 EAR-ERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAA 678
           E   E A  +   ++ RER      + E L+       +    E  +    E        
Sbjct: 895 ELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERL 954

Query: 679 ARA 681
              
Sbjct: 955 EEE 957

Length = 1163

>gnl|CDD|222405 pfam13830, DUF4192, Domain of unknown function (DUF4192)

 Score = 55.8 bits (135), Expect = 4e-08
 Identities = 36/136 (26%), Positives = 40/136 (29%), Gaps = 7/136 (5%)

Query: 551 ARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEA 610
           A  AV         RA  EAR      A  +  AAA + A RA   R        A    
Sbjct: 140 AAAAVLAGRVPLLSRADLEARFAPPPGAAAERLAAALDAAARARDARLARLPARGAVRAL 199

Query: 611 RERAERAAAEARERANAEAREKEARERASVA------RTEAEALQRAERAAVQRAASEAR 664
           R     A   A  R  A     +  E A +A      R    AL  A  A    A     
Sbjct: 200 RRALADALTAAAARVAAGEALPDDDEAARLAAALTDVRVRDAALALAVGANADAAERLWL 259

Query: 665 ERAA-AEARERAAAAA 679
             A       RAAA  
Sbjct: 260 AVARRLPGPYRAAALT 275

Length = 321

>gnl|CDD|235903 PRK06991, PRK06991, ferredoxin; Provisional

 Score = 55.2 bits (133), Expect = 4e-08
 Identities = 40/134 (29%), Positives = 54/134 (40%), Gaps = 9/134 (6%)

Query: 566 AAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERA 625
              E       +      A AR  A +A ++R +  A  RAAA A   A  AAAEA   A
Sbjct: 137 VTGERTGWDAWSQAQADAARARHDARQARLRREREAAEARAAARAAASAAAAAAEASAAA 196

Query: 626 NAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERA---------AAEARERAA 676
              A + EA++RA +A     A ++ E  A Q A  +  E           AAEAR +  
Sbjct: 197 APAADDAEAKKRAIIAAALERARKKKEELAAQGAGPKNTEGVSAAVQAQIDAAEARRKRL 256

Query: 677 AAARANQNQQKNDN 690
           A  R   +    D 
Sbjct: 257 AEQRDAPDDANADG 270

Length = 270

>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional

 Score = 55.3 bits (134), Expect = 1e-07
 Identities = 58/241 (24%), Positives = 96/241 (39%), Gaps = 40/241 (16%)

Query: 443 IAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDR 502
           + A  AAA +  + +A A+  ++  +  RE+ KA          R  +A +Q A     +
Sbjct: 495 VKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQA--------RARQAEKQAAAAADPK 546

Query: 503 EMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREA 562
                 K      + R          + KK  ++      E E + +KA           
Sbjct: 547 ------KAAVAAAIAR---------AKAKKAAQQAANAEAEEEVDPKKAAV--------- 582

Query: 563 RERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEAR 622
              AAA AR KA++AA   A+A   E+      ++A       AAA AR +A++A  +A 
Sbjct: 583 ---AAAIARAKAKKAAQQAASAEPEEQVAEVDPKKAAV-----AAAIARAKAKKAEQQAN 634

Query: 623 ERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARAN 682
                    ++A   A++AR +A    + +  A    A + ++ A A A  RA A   A 
Sbjct: 635 AEPEEPVDPRKAAVAAAIARAKARKAAQQQANAEPEEAEDPKKAAVAAAIARAKAKKAAQ 694

Query: 683 Q 683
           Q
Sbjct: 695 Q 695

Length = 695

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 55.1 bits (133), Expect = 1e-07
 Identities = 52/241 (21%), Positives = 101/241 (41%), Gaps = 25/241 (10%)

Query: 466 KEMRERESFKAARSRESVQPDRE----ERATQQDAQERLDREMQQREK--GEEQRRLERE 519
           KE RE E ++  + +E+++  +E    + A+ ++  E+L  E+ + EK   E ++ LE  
Sbjct: 218 KEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEEL 277

Query: 520 REREREEKEREKKRIEKEKERAREIEKEREKARQAVERATRE----ARERAAAEARLKAE 575
            ++ ++  E E+ R+   KE+  E+E E     +++    RE        A  EA +   
Sbjct: 278 NKKIKDLGEEEQLRV---KEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKL 334

Query: 576 RAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEARE--KE 633
            A +++         E    +R +    E A  +      RA  E  ++  AE R+  K+
Sbjct: 335 LAEIEE----LEREIEEERKRRDKLTE-EYAELKEELEDLRAELEEVDKEFAETRDELKD 389

Query: 634 ARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLE 693
            RE+    + E   L+R      +       +R + E  +  AA A       + + + E
Sbjct: 390 YREKLEKLKREINELKRELDRLQEEL-----QRLSEELADLNAAIAGIEAKINELEEEKE 444

Query: 694 S 694
            
Sbjct: 445 D 445

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|205692 pfam13514, AAA_27, AAA domain

 Score = 55.2 bits (133), Expect = 1e-07
 Identities = 45/218 (20%), Positives = 72/218 (33%), Gaps = 14/218 (6%)

Query: 489 ERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKER 548
           E  + +  +E   R ++Q EK  E   L     RE  + +     +        +   ER
Sbjct: 555 ELQSLRQQEEAARRRLEQLEKELEVLELALAALREAWQAQWAAAGLPLTPAEMEDWLAER 614

Query: 549 EKAR---QAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARER 605
             AR   +A  +A  E        ARL+A   A  KA A      E A +      AR+ 
Sbjct: 615 ATAREQVRAYFKARAELDALLDRRARLRAALRAALKAVAIVLPGEELAELLEL---ARQL 671

Query: 606 AAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARE 665
                ++ A +A+ + R R    A E+                ++   A ++        
Sbjct: 672 LEEAEKQAARKASLDERLRDAERALEEAEERHDEAQSALEAWQEQWYDALLEAGLGGRAS 731

Query: 666 RAAAEA--------RERAAAAARANQNQQKNDNDLESF 695
            A A          +E+  AA    Q     + DL  F
Sbjct: 732 PAGALDALELLQNIKEKLQAADDLRQRIAAMERDLARF 769

This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif. Length = 1118

>gnl|CDD|235903 PRK06991, PRK06991, ferredoxin; Provisional

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 43/137 (31%), Positives = 53/137 (38%), Gaps = 22/137 (16%)

Query: 546 KEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARER 605
           + R  ARQA     R  RER AAEAR  A  AA           A  AA + + A A   
Sbjct: 156 RARHDARQA-----RLRREREAAEARAAARAAA----------SAAAAAAEASAAAAPAA 200

Query: 606 AAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARE 665
             AEA++RA  AAA  R R   E    +     +     A           Q  A+EAR 
Sbjct: 201 DDAEAKKRAIIAAALERARKKKEELAAQGAGPKNTEGVSAA-------VQAQIDAAEARR 253

Query: 666 RAAAEARERAAAAARAN 682
           +  AE R+    A    
Sbjct: 254 KRLAEQRDAPDDANADG 270

Length = 270

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 54.7 bits (132), Expect = 1e-07
 Identities = 49/228 (21%), Positives = 86/228 (37%), Gaps = 33/228 (14%)

Query: 489 ERATQQDAQERLDREMQQREKGEEQRRLERER---EREREEKEREKKRIEK--EKERARE 543
           +   QQD + +L+++++  E   E   LE +      + ++  ++   +         +E
Sbjct: 53  KIREQQDQRAKLEKQLKSLET--EIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110

Query: 544 IEKEREKARQ--AVERATRE-------ARERAAAEARLKA----------------ERAA 578
            E+ R  A Q  A++R+ R        + E A    RL                  +   
Sbjct: 111 REQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATL 170

Query: 579 VDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERA 638
              A   A   AE+A +    +E R + A  A+   ER    A+  +   A +K+  E  
Sbjct: 171 KQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELR 230

Query: 639 SVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQ 686
           +        +  AE AA +   + A   A A AR RAA A R  +  +
Sbjct: 231 ANESRLKNEIASAEAAAAKAREAAAAAEA-AAARARAAEAKRTGETYK 277

Length = 420

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 40/145 (27%), Positives = 76/145 (52%), Gaps = 11/145 (7%)

Query: 543 EIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEA 602
            + ++  + +Q  + A ++ +ER     +   E     +   AA +  ++   QRA AE 
Sbjct: 47  AVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEA----EKQRAAEQARQKELEQRAAAEK 102

Query: 603 RERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASE 662
             + A +A +      AE +++   EA+ K+A E  + A  EAEA ++A+  A ++A  E
Sbjct: 103 AAKQAEQAAK-----QAEEKQKQAEEAKAKQAAEAKAKA--EAEAEKKAKEEAKKQAEEE 155

Query: 663 ARERAAAEARERAAAAARANQNQQK 687
           A+ +AAAEA+++AA A +  + + K
Sbjct: 156 AKAKAAAEAKKKAAEAKKKAEAEAK 180

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 54.7 bits (132), Expect = 2e-07
 Identities = 34/209 (16%), Positives = 67/209 (32%), Gaps = 10/209 (4%)

Query: 487 REERATQQDAQERLDREMQQREKGEEQRRLERERERERE-EKEREKK-----RIEKEKER 540
             E   ++ ++   + E  Q E  E ++ +E  +    E  +E E+       +++E E 
Sbjct: 240 ELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEE 299

Query: 541 A-REIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQ 599
              EI   RE+  +               + +++A +  +++      E  +  A     
Sbjct: 300 LEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEA 359

Query: 600 AEARERAAAEARERAERAAAEARERANAEAREKEA--RERASVARTEAEALQRAERAAVQ 657
            E  E   +   E  E      RE       E      E   + R      +R ER + +
Sbjct: 360 KEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSER 419

Query: 658 RAASEARERAAAEARERAAAAARANQNQQ 686
               +  E    EA            N++
Sbjct: 420 LEDLK-EELKELEAELEELQTELEELNEE 447

Length = 1163

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 54.7 bits (132), Expect = 2e-07
 Identities = 57/230 (24%), Positives = 77/230 (33%), Gaps = 29/230 (12%)

Query: 469 RERESFK-AARSRESVQPDREERATQQDAQERLDR------EMQQREKGEEQRRLERERE 521
           RERE      R       + EE      A+  LD       E ++ E  +    L    E
Sbjct: 272 REREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLE 331

Query: 522 REREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDK 581
             R   +   +  E  +E A ++E+  E+ R+       E  E   A    + E   +++
Sbjct: 332 ECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEE 391

Query: 582 ANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARER-ANAEAREKEARERASV 640
                RER   A V    AE       E R+       E RER A  EA  + ARER   
Sbjct: 392 EIEELRERFGDAPVDLGNAEDFLEELREERD-------ELREREAELEATLRTARER--- 441

Query: 641 ARTEAEALQRA----------ERAAVQRAASEARERAAAEARERAAAAAR 680
              EAEAL  A          E +       E RER      E       
Sbjct: 442 -VEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEE 490

Length = 880

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 55.2 bits (133), Expect = 2e-07
 Identities = 63/288 (21%), Positives = 95/288 (32%), Gaps = 31/288 (10%)

Query: 434  PSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQ 493
            PS   + ++   A+ A  +      E      K      ++K AR          +  T 
Sbjct: 783  PSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAWKQARRELERDAADLDLPTD 842

Query: 494  QDAQERLDREMQQ------------REKGEEQRRLERERERERE--------EKEREKKR 533
             DA E +   +++            RE      R   +R R            ++  + R
Sbjct: 843  PDALEAVGLALKRFGDHLHTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEAR 902

Query: 534  IEKEKERAREIEKEREKARQAVERATREARERAAAEA------RLKAERAAVDKANA-AA 586
             E E+   R    E        E   R A  RAA  +      RL    A  ++A   A 
Sbjct: 903  AEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAE 962

Query: 587  RERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAE 646
             +RAE  A    +AEAR+ A  + RE A     E     + E  E +A+     A   A 
Sbjct: 963  EKRAEADATLDERAEARDHAIGQLREFALTGLLEDALP-DTEVPELDAKWTIEAALKVAR 1021

Query: 647  --ALQRAERAAVQRAASEARERAAAEARE-RAAAAARANQNQQKNDND 691
                   + A    A   A  R + E  E R   AA  +  Q +  +D
Sbjct: 1022 RTEAALLQVADDDEALDRAANRISEEYLELRRTLAALGDDAQMEPADD 1069

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 54.8 bits (132), Expect = 2e-07
 Identities = 58/239 (24%), Positives = 83/239 (34%), Gaps = 27/239 (11%)

Query: 457 RAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDRE------------- 503
           R   + R A+   ++ S    R+R+ ++  REE        E L+RE             
Sbjct: 266 RRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQG 325

Query: 504 ---MQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATR 560
               Q  E+ E  R      +    +  +  +  E   E  R    E        ER  R
Sbjct: 326 SPAYQDAEELERARADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELR 385

Query: 561 EARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAE 620
            ARE+ A  A    ERA +  A       AE  A   AQ      A    R+ A+R  A+
Sbjct: 386 AAREQLARAA----ERAGLSPA-----HTAEPDAALAAQELQELGALDARRQDADRVIAQ 436

Query: 621 ARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAA 679
             E+     R  +  +RA    T A A  R +    +   + AR   A EA  R  A  
Sbjct: 437 RSEQVALLRRRDDVADRAE--ATHAAARARRDELDEEAEQAAARAELADEAVHREGARL 493

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

>gnl|CDD|205692 pfam13514, AAA_27, AAA domain

 Score = 55.2 bits (133), Expect = 2e-07
 Identities = 47/249 (18%), Positives = 77/249 (30%), Gaps = 11/249 (4%)

Query: 439 VESSIAAASAAAMKEAMDRAEAKFRHAKEMRERES---FKAARSRESVQ--PDREERATQ 493
           +    + A A    E +   + K + A ++R+R +      AR  E V+   +       
Sbjct: 726 LGGRASPAGALDALELLQNIKEKLQAADDLRQRIAAMERDLARFEEEVEALAEAVAPEML 785

Query: 494 QDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQ 553
               +   R ++QR K           E+  EE E  +K + +      E E       +
Sbjct: 786 GTPADETARALKQRLKRARDT--AAAAEKLAEEIEEAEKEVSEAAAALDEAEARLTALLR 843

Query: 554 AVERATREARERAAAEA-RLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARE 612
           A    T E    A   +   +  R  +                   +A   E AA +  E
Sbjct: 844 AARCTTIEELLAAVERSDTYRELRKRIAALERTL---VRAGGGLSLEALVAEAAALDPDE 900

Query: 613 RAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEAR 672
              R    AR+    E    E  +    A+ E   +     AA   A  E+      +  
Sbjct: 901 LPARLEELARDIEELEEELNELAQEVGAAKQELARMDGGSTAAELEAERESLLAQLRDLA 960

Query: 673 ERAAAAARA 681
           ER    A A
Sbjct: 961 ERYLELALA 969

This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif. Length = 1118

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 54.1 bits (130), Expect = 2e-07
 Identities = 51/237 (21%), Positives = 95/237 (40%), Gaps = 5/237 (2%)

Query: 444 AAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDRE 503
           A A  A  K + D A  +             K A+  ++     EE+  +Q  +E+  ++
Sbjct: 62  ALAKCAESKLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKK 121

Query: 504 MQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREAR 563
            + +E+  + R+ + E + +R  KE+EK   EKEK+     ++E EK R+ V   +R  +
Sbjct: 122 EKPKEE-PKDRKPKEEAKEKRPPKEKEK---EKEKKVEEPRDREEEKKRERVRAKSRPKK 177

Query: 564 ERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARE 623
                    K E    +K   AARE  +    +    E RE+   +  +  E   +   E
Sbjct: 178 PPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREK-EEDDGKDRETTTSPMEE 236

Query: 624 RANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAAR 680
             + ++ E   R  +S+ + +      +         +E R R +        A+AR
Sbjct: 237 DESRQSSEISRRSSSSLKKPDPSPSMASPETRESSKRTETRPRTSLRPPSARPASAR 293

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 53.9 bits (130), Expect = 3e-07
 Identities = 40/260 (15%), Positives = 83/260 (31%), Gaps = 21/260 (8%)

Query: 445 AASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREM 504
                   E + R  +  +      E    + ++        R+    +++ ++    E 
Sbjct: 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDAS--RKIGEIEKEIEQLEQEEE 733

Query: 505 QQREKGEEQRRLEREREREREEKEREKKRIEKEKERARE-IEKEREK--------ARQAV 555
           + +E+ EE        E+E E  + E K +E   E   E + K  E         +   +
Sbjct: 734 KLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRI 793

Query: 556 ERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAE 615
                E  +     +R++A    +++         +    +  Q    +R   + + ++ 
Sbjct: 794 PEIQAELSKLEEEVSRIEARLREIEQK-LNRLTLEKEYLEKEIQELQEQRIDLKEQIKSI 852

Query: 616 RAAAEA----RERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAE- 670
               E     +E    E  E EA  R   +R      +R E  A  R      E   A+ 
Sbjct: 853 EKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQI 912

Query: 671 --ARERAA--AAARANQNQQ 686
              R+R +   A      ++
Sbjct: 913 EKKRKRLSELKAKLEALEEE 932

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated

 Score = 53.4 bits (128), Expect = 3e-07
 Identities = 58/238 (24%), Positives = 99/238 (41%), Gaps = 9/238 (3%)

Query: 448 AAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQR 507
           A    + M   EAK R A   + + +  A + RE  +   EE   +  A+         +
Sbjct: 47  ALPKNDDMTIEEAKRRAAAAAKAKAAALAKQKREGTEEVTEEEKAKAKAKA----AAAAK 102

Query: 508 EKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAA 567
            K     + +RE   E  E+E+   + +       +     ++ R+  E  T E  E   
Sbjct: 103 AKAAALAKQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDK 162

Query: 568 AEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANA 627
            +A+ KA  AA  KA A A+++A  A     +    E+A A+A+     AAA A+ +A A
Sbjct: 163 EKAKAKAAAAAKAKAAALAKQKAAEAGEGTEEVTEEEKAKAKAK-----AAAAAKAKAAA 217

Query: 628 EAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQ 685
            A++K ++        +A+A   A   A   AA+ A+ + A   +E        + NQ
Sbjct: 218 LAKQKASQGNGDSGDEDAKAKAIAAAKAKAAAAARAKTKGAEGKKEEEPKQEEPSVNQ 275

Length = 430

>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC

 Score = 54.2 bits (130), Expect = 3e-07
 Identities = 45/268 (16%), Positives = 94/268 (35%), Gaps = 21/268 (7%)

Query: 451 MKEAMDRAEAKFRHAK--EMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQRE 508
               M+ A+ K  H K   +  R       +        E +   +   + L   +QQ +
Sbjct: 180 QLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQ 239

Query: 509 KGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREAR----E 564
           +       +RE + E+ +K++  K++    E  R  E   E+ ++ + RA + A      
Sbjct: 240 QSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHI 299

Query: 565 RAAAEARLKAERAAVD---KANAAARERAERAAVQRAQAEARERAAAE-----ARERAER 616
           +A  +   +A+R   +   K  + A+   +RAA  + Q+   E+                
Sbjct: 300 KAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRD 359

Query: 617 AAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERA- 675
           A   A        ++    +     + +   L +  ++  +      RE+A  + R  A 
Sbjct: 360 AHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAF 419

Query: 676 ------AAAARANQNQQKNDNDLESFFS 697
                  A A+  Q  Q+   +L +   
Sbjct: 420 RDLQGQLAHAKKQQELQQRYAELCAAAI 447

All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 53.6 bits (129), Expect = 5e-07
 Identities = 53/248 (21%), Positives = 88/248 (35%), Gaps = 14/248 (5%)

Query: 453 EAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEE 512
           E + R   +     E  +RE        E +Q   EE    ++  E L+ E+++ +  E 
Sbjct: 705 EELRRQLEELERQLEELKRELAALEEELEQLQSRLEE---LEEELEELEEELEELQ--ER 759

Query: 513 QRRLEREREREREEKEREKKRIEKEKERAREIEKER----EKARQAVERATREARERAAA 568
              LE E E   E   + K+ IE+ +E+ + +++E     E+  +A  R     RE  + 
Sbjct: 760 LEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESL 819

Query: 569 EARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAE 628
           E R   ER    +      E  E         E  E    E  E  E       E+   E
Sbjct: 820 EQRR--ERLE-QEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELE 876

Query: 629 AREKEARERASVARTEAEALQRAERAAVQRAASEARERA-AAEARERAAAAARANQNQQK 687
              KE  E       E   L  +E A ++    + RER    EA+            ++ 
Sbjct: 877 DELKELEEEKEELEEELREL-ESELAELKEEIEKLRERLEELEAKLERLEVELPELEEEL 935

Query: 688 NDNDLESF 695
            +   ++ 
Sbjct: 936 EEEYEDTL 943

Length = 1163

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 52.5 bits (127), Expect = 8e-07
 Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 25/169 (14%)

Query: 449 AAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERL-DREMQQR 507
           A  KEA+  A+ +    +   E+E              RE R   Q  ++RL  +E    
Sbjct: 53  AIKKEALLEAKEEIHKLRNEFEKEL-------------RERRNELQKLEKRLLQKEENLD 99

Query: 508 EKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATR----EAR 563
            K E   + E E E++ +E E++++ +EK++E   E+E+  E+  Q +ER +     EA+
Sbjct: 100 RKLELLEKREEELEKKEKELEQKQQELEKKEE---ELEELIEEQLQELERISGLTAEEAK 156

Query: 564 ER--AAAEARLKAERAA-VDKANAAARERAERAAVQRAQAEARERAAAE 609
           E      E   + E A  + +    A+E A++ A +   A+A +R AA+
Sbjct: 157 EILLEKVEEEARHEAAVLIKEIEEEAKEEADKKA-KEILAQAIQRCAAD 204

Length = 520

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.4 bits (126), Expect = 9e-07
 Identities = 48/334 (14%), Positives = 100/334 (29%), Gaps = 40/334 (11%)

Query: 479 SRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEK 538
           SR       ++R  ++  +E  + E Q  +  EE + L+ E     +  E  ++++E+ +
Sbjct: 656 SRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELE 715

Query: 539 ERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRA 598
            +  E+++E     + +E+      E       L+ E   + +      E  E      A
Sbjct: 716 RQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALA 775

Query: 599 QAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQR 658
           + +       E R+      A   E    E   +EA  R      E E+L++      Q 
Sbjct: 776 KLKEEIEELEEKRQ------ALQEELEELEEELEEAERRLDALERELESLEQRRERLEQE 829

Query: 659 AASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSRPSSAPRPRANTSDSLFD 718
                 E    E  +         + +++ +   E    + +        +    D L  
Sbjct: 830 IEELEEEIEELEE-KLDELEEELEELEKELEELKEELEELEAE-------KEELEDEL-- 879

Query: 719 SQSKGGPEPARRTSVGASSNMRKASSTTNIVDDLSSIFGAAGSSAGEFQDVEGETEERRR 778
                                          ++L        S   E ++   +  ER  
Sbjct: 880 ------------------------KELEEEKEELEEELRELESELAELKEEIEKLRERLE 915

Query: 779 ARLERHQRTQERAAKALAEKNERDLQAQRDQAER 812
               + +R +    +   E  E        + ER
Sbjct: 916 ELEAKLERLEVELPELEEELEEEYEDTLETELER 949

Length = 1163

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 52.2 bits (126), Expect = 1e-06
 Identities = 37/226 (16%), Positives = 62/226 (27%), Gaps = 18/226 (7%)

Query: 593 AAVQRAQ----AEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEAL 648
           AA++ A+    A A    AA A      A A A  R   +   + A  +A  A     A 
Sbjct: 53  AAIKEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAA 112

Query: 649 QRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSRPSSAPRP 708
             A  AA    A++ARER       R  AA +A +  ++   +  +  +  +        
Sbjct: 113 AAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDER 172

Query: 709 RANTSDSLFDSQSKGGPEPARRTSVGASSNMRKASSTTNIVDDLSSIFGAAGSSAGEFQD 768
           R        + +        R        +                            + 
Sbjct: 173 RRRGDR---EDRQAEAERGERGRREERGRDGDDRDRRDR-----------REQGDRREER 218

Query: 769 VEGETEERRRARLERHQRTQERAAKALAEKNERDLQAQRDQAERHR 814
              +  +RR  R  R +R            +      +     R R
Sbjct: 219 GRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGR 264

Length = 672

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 52.1 bits (125), Expect = 1e-06
 Identities = 55/204 (26%), Positives = 80/204 (39%), Gaps = 6/204 (2%)

Query: 486 DREERATQQDAQERLDREMQQREKGE-EQRRLEREREREREEKEREKKRIEKEKERAREI 544
           D +E     DA E+LD    + E+ E  +R L    +R R       +R      R R  
Sbjct: 218 DDDELTDVADALEQLDEYRDELERLEALERALRNFLQRYRRYARTMLRR---RATRLRSA 274

Query: 545 EKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARE 604
           + + ++  + + RA  E       E  L A   A+++   A R R E      A  +A E
Sbjct: 275 QTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEE 334

Query: 605 RAAAEARERAERAAAEARERANAEA--REKEARERASVARTEAEALQRAERAAVQRAASE 662
              A A   A +AAA    +A  EA  R +E R R        +  +R  RAA ++ A  
Sbjct: 335 LERARADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLARA 394

Query: 663 ARERAAAEARERAAAAARANQNQQ 686
           A     + A      AA A Q  Q
Sbjct: 395 AERAGLSPAHTAEPDAALAAQELQ 418

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production and conversion]

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 28/109 (25%), Positives = 46/109 (42%)

Query: 493 QQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKAR 552
           +++AQ  L    Q+ E+  EQ     E+ ++  E+  E+ + E E+E  R  E    +  
Sbjct: 53  KEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIE 112

Query: 553 QAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAE 601
              ERA  E R   A  A   AE+    K + AA++    A +      
Sbjct: 113 AEKERALEELRAEVAELAVAIAEKLLGKKVDEAAQKDLIDAFIAELGEN 161

Length = 161

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 51.9 bits (125), Expect = 1e-06
 Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 28/182 (15%)

Query: 507 REKGEEQRRLERERERER--EEKEREKKRIEKEKERAREIEKEREKARQAVERATREAR- 563
           R++  E++    E   +R  EE ++E + ++KE     E ++E  K R  +ER  +E R 
Sbjct: 19  RKRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALL--EAKEEVHKLRAELERELKERRN 76

Query: 564 ERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAA-----------AEARE 612
           E    E RL      +D+   +  ++ E    +  +   +E+             AE RE
Sbjct: 77  ELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQRE 136

Query: 613 RAERAAA----EARERANAEAREKEARERAS-VARTEAEALQRAER-------AAVQRAA 660
             ER +     EA+E    E  E+   E A  +   E EA + A++        A+QR A
Sbjct: 137 ELERISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEAKEEADKKAKEILATAIQRYA 196

Query: 661 SE 662
            +
Sbjct: 197 GD 198

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 51.1 bits (122), Expect = 2e-06
 Identities = 44/152 (28%), Positives = 78/152 (51%), Gaps = 6/152 (3%)

Query: 463 RHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLERERER 522
           R   + +++++ +A +  +  Q  +EE+A +  A+++   E  + +   E  +L+   E 
Sbjct: 110 RLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEA 169

Query: 523 ERE-EKEREKKRIEKEKERAREIEKEREK-ARQAVERATREARERAAAEARLKAERAAVD 580
           +++ E+  +     K K  A   +K+ E  A+ A E+A  EA  +A AE   KAE AA +
Sbjct: 170 KKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEK--KAEAAAEE 227

Query: 581 KANAAARERAERAAV--QRAQAEARERAAAEA 610
           KA A  ++ A +A      A A+A ER AA A
Sbjct: 228 KAAAEKKKAAAKAKADKAAAAAKAAERKAAAA 259

Length = 387

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 51.6 bits (124), Expect = 2e-06
 Identities = 38/209 (18%), Positives = 83/209 (39%), Gaps = 8/209 (3%)

Query: 437 EDVESSIAAA--SAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERAT-- 492
            ++E+ IA+   S A  +  ++ AE +    +   ++   +       ++ +R+ R    
Sbjct: 297 GELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT 356

Query: 493 ---QQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKERE 549
               +  +E  D   +  E  +E      E +  RE+ E+ K+ I + K     +++E +
Sbjct: 357 EEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQ 416

Query: 550 KARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAE 609
           +  + +           A    L+ E+            + E+ A   ++ E       E
Sbjct: 417 RLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE 476

Query: 610 ARERAERAAAEA-RERANAEAREKEARER 637
             +R E+  ++  RE A AEA+ + + ER
Sbjct: 477 EYDRVEKELSKLQRELAEAEAQARASEER 505

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional

 Score = 51.5 bits (123), Expect = 2e-06
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 12/174 (6%)

Query: 519  EREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREAR---ERAAAEARLKAE 575
            E++R R E+ REK+  + E  RA     E   AR+       E +   +  AAEA+   E
Sbjct: 880  EKDRARAEELREKRG-KLEAHRAMLSGSEANSARRDTMEIQNEQKPTQDGPAAEAQPAQE 938

Query: 576  RA---AVDKANAAARERAERA--AVQRAQAEARERAAAEARERAERAAAE---ARERANA 627
                 + +KA AA  E A++A  AV     +  E      R   ++AAA     +++   
Sbjct: 939  NTVVESAEKAVAAVSEAAQQAATAVASGIEKVAEAVRKTVRRSVKKAAATRAAMKKKVAK 998

Query: 628  EAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARA 681
            +A  K+A  + + A+  A   + A++A  ++ A +   + AA+   R AA  +A
Sbjct: 999  KAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKKPARKAAGRKA 1052

Length = 1052

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 50.7 bits (122), Expect = 3e-06
 Identities = 36/168 (21%), Positives = 52/168 (30%), Gaps = 6/168 (3%)

Query: 574 AERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKE 633
           A + A     AAA       A    +A     AA +A + A  AAA   E A A      
Sbjct: 54  AIKEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAA 113

Query: 634 ARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLE 693
           A   A+ A   A+A +R ER         AR+      +    A A A +  ++ + D  
Sbjct: 114 AAAEAASAPEAAQARERRERGE-AARRGAARKAGEGGEQPATEARADAAERTEEEERDER 172

Query: 694 SFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPARRTSVGASSNMRK 741
                  R     R            + +G     R          R+
Sbjct: 173 -----RRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRR 215

Length = 672

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 51.0 bits (122), Expect = 3e-06
 Identities = 69/305 (22%), Positives = 100/305 (32%), Gaps = 25/305 (8%)

Query: 549 EKARQAVERATREAR--ERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERA 606
           ++ R  +ER     R         R  A            R RA R    + Q +   R 
Sbjct: 233 DEYRDELERLEALERALRNFLQRYRRYARTML--------RRRATRLRSAQTQYDQLSRD 284

Query: 607 AAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARER 666
              AR+  E A  E RE    +AR +     A   RT  EALQ     A Q A    R R
Sbjct: 285 LGRARDELETAREEERE---LDARTEALEREADALRTRLEALQ--GSPAYQDAEELERAR 339

Query: 667 AAAEARERAAAAAR--ANQNQQKNDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKGG 724
           A AEA + AAA AR    + + + + +       + R   A R      + L  +  + G
Sbjct: 340 ADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLARAAERAG 399

Query: 725 PEPARRTSVGASSNMRKASSTTNIVDDLSSIFGAAGSSAGEFQDVEGETEERRRARLERH 784
             PA      A+   ++                A    A        E     R R +  
Sbjct: 400 LSPAHTAEPDAALAAQELQELGA--------LDARRQDADRVIAQRSEQVALLRRRDDVA 451

Query: 785 QRTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYV 844
            R +   A A A ++E D +A++  A      E +  E  R A       +    T+  V
Sbjct: 452 DRAEATHAAARARRDELDEEAEQAAARAELADEAVHREGARLAWVDAWQAQLRELTILAV 511

Query: 845 LWPES 849
                
Sbjct: 512 DDQPG 516

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 50.5 bits (122), Expect = 3e-06
 Identities = 41/187 (21%), Positives = 79/187 (42%), Gaps = 26/187 (13%)

Query: 490 RATQQDAQERLDREMQQREKGEEQRRLERERERE-REEKEREKKRIEKE-KERAREIEKE 547
            A  ++A+E   R +++ +K  E   +++E   E +EE  + +   EKE +ER  E++K 
Sbjct: 30  EAKIKEAEEEAKRILEEAKK--EAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKL 87

Query: 548 REKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAA 607
            ++  Q  E   R+       E  L+ +   +++      ++ E            E   
Sbjct: 88  EKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEEL----------EELI 137

Query: 608 AEARERAERAAA----EARERANAEAREKEARERAS-VARTEAEALQRAER-------AA 655
            E  +  ER +     EA+E    +  E+   E A  +   E EA + A++        A
Sbjct: 138 EEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADKKAKEILAQA 197

Query: 656 VQRAASE 662
           +QR A++
Sbjct: 198 IQRCAAD 204

Length = 520

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 50.8 bits (122), Expect = 3e-06
 Identities = 44/184 (23%), Positives = 71/184 (38%), Gaps = 9/184 (4%)

Query: 456 DRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRR 515
            R     R  +E RE       ++++     RE +  +   + R   E QQ  + E QRR
Sbjct: 623 TRDNRTRREGRENREENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRR 682

Query: 516 LEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAE 575
               R  E+ + ++E K +  E++  +E E+E E+ +Q   R  +    +   + R++  
Sbjct: 683 ----RNDEKRQAQQEAKALNVEEQSVQETEQE-ERVQQVQPRRKQRQLNQ---KVRIEQS 734

Query: 576 RAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEAR 635
            A    A       A    VQ   A   E         A+  A E  E  NAE R+    
Sbjct: 735 VAEEAVAPVVEETVAAEPVVQEVPAPRTELVKVPLPVVAQ-TAPEQDEENNAENRDNNGM 793

Query: 636 ERAS 639
            R S
Sbjct: 794 PRRS 797

Length = 1068

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 50.6 bits (121), Expect = 3e-06
 Identities = 38/162 (23%), Positives = 53/162 (32%), Gaps = 4/162 (2%)

Query: 554 AVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARER 613
            V  A      RAAA     A  A      AA    A +AA   A   A    AA A   
Sbjct: 375 RVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPA 434

Query: 614 AERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARE 673
                 +A +       +  AR  A     E +A   A+  +    AS+A   AA E   
Sbjct: 435 TADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAP 494

Query: 674 RAAAAARANQNQQKNDNDLESFFSMSSRPSSAPRPRANTSDS 715
           RAAA + A      +        + +SR  +         ++
Sbjct: 495 RAAAPSAATPAAVPDARAP----AAASREDAPAAAAPPAPEA 532

Length = 830

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 50.3 bits (121), Expect = 4e-06
 Identities = 41/208 (19%), Positives = 75/208 (36%), Gaps = 5/208 (2%)

Query: 431 GEVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREER 490
               +P       A A+AAA +     AEA    A+      +  AA +  +  P+  + 
Sbjct: 68  ATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQA 127

Query: 491 ATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREK 550
             +++  E   R   ++     ++     R    E  E E    E+++ R R   ++R+ 
Sbjct: 128 RERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEE----ERDERRRRGDREDRQA 183

Query: 551 ARQAVERATREARERAAAEARLKAERAAVDKA-NAAARERAERAAVQRAQAEARERAAAE 609
             +  ER  RE R R   +   +  R   D+      R+  +R   +R +     R    
Sbjct: 184 EAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDN 243

Query: 610 ARERAERAAAEARERANAEAREKEARER 637
             +R +R   +   R     R    R+R
Sbjct: 244 REDRGDRDGDDGEGRGGRRGRRFRDRDR 271

Length = 672

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 50.8 bits (122), Expect = 4e-06
 Identities = 49/256 (19%), Positives = 99/256 (38%), Gaps = 14/256 (5%)

Query: 445 AASAAAMKEAMDRAEAKFRHAKEMRER--ESFKAARSRESVQPDREERATQQDAQERLDR 502
           AA+   ++E + +AE   + A   +++  E    A +    Q   E  A     Q RLD 
Sbjct: 599 AANETELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDL 658

Query: 503 EMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREA 562
           +  Q E+   + +LE      +++ E + ++++ + +   ++ ++++   +A++   RE 
Sbjct: 659 QRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLK---QLLEQQQAFLEALKDDFREL 715

Query: 563 R-----ERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERA 617
           R     +    E  L  + A +  A  AA  R +  A  +   +  +R  A         
Sbjct: 716 RTERLAKWQVVEGELDNQLAQLSAAIEAA--RTQAKARLKELKKQYDRELASLDVDPNTV 773

Query: 618 AAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAA 677
               R+    E   +    R    R E  A  + E    + +  E R   A + RE  ++
Sbjct: 774 KELKRQIEELETTIERIAVRRPEVR-EYRAFMQ-ETWLHRDSLREERPNLAIQLRELESS 831

Query: 678 AARANQNQQKNDNDLE 693
           A    Q   +   D +
Sbjct: 832 AEELQQELTRLIKDTK 847

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional

 Score = 50.1 bits (120), Expect = 4e-06
 Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 12/171 (7%)

Query: 475 KAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRI 534
            A  +   +Q  ++E   + +A     +E+  RE+ ++++   RERE  + E+ER  ++ 
Sbjct: 31  LAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKE 90

Query: 535 EKEKERAREI---EKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAE 591
           E+   RA ++   E + E+  +A+     E  E    +   +  R A         E+A 
Sbjct: 91  EQLDARAEKLDNLENQLEEREKALSARELELEEL-EKQLDNELYRVA-----GLTPEQAR 144

Query: 592 RAAVQRAQAEARERAAAEARERAERAAAEARERAN---AEAREKEARERAS 639
           +  ++   AE  E  A   ++  E A  EA  +A    A+A ++ A E AS
Sbjct: 145 KLLLKLLDAELEEEKAQRVKKIEEEADLEAERKAQNILAQAMQRIASETAS 195

Length = 508

>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional

 Score = 50.6 bits (121), Expect = 4e-06
 Identities = 64/293 (21%), Positives = 111/293 (37%), Gaps = 21/293 (7%)

Query: 450  AMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREK 509
            A+++ +D+ + +   A+E RE+    AAR           +A ++ A ++  ++  + E 
Sbjct: 1160 ALEKELDKLDKEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESET 1219

Query: 510  GEEQRRLEREREREREEKEREKKR-------IEKEKERAREIEKEREKARQAVERATREA 562
             EE             E  + K R           KE+  E E    K R A        
Sbjct: 1220 TEETYGSSAMETENVAEVVKPKGRAGAKKKAPAAAKEKEEEDEILDLKDRLAAYNLDSAP 1279

Query: 563  RERAAAEA---RLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAA 619
             + A  E     + A RAA  K   A+      +             A   +++  R  A
Sbjct: 1280 AQSAKMEETVKAVPARRAAARKKPLASVSVISDSDDDDDDFAVEVSLAERLKKKGGRKPA 1339

Query: 620  EARERAN---AEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAA 676
             A ++A    A A+++      S  +   E L+ AE   +       + RA+   ++  +
Sbjct: 1340 AANKKAAKPPAAAKKRGPATVQSGQKLLTEMLKPAEAIGISPEKKVRKMRASPFNKKSGS 1399

Query: 677  AAARANQNQQKNDNDLESFFSMSSRP----SSAPRP-RAN---TSDSLFDSQS 721
               RA  N++   ++  S  S S +     S+ PRP RAN   T+  L DS+S
Sbjct: 1400 VLGRAATNKETESSENVSGSSSSEKDEIDVSAKPRPQRANRKQTTYVLSDSES 1452

Length = 1465

>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional

 Score = 50.2 bits (120), Expect = 5e-06
 Identities = 62/330 (18%), Positives = 113/330 (34%), Gaps = 42/330 (12%)

Query: 498  ERLDREM----QQREKGEEQRR-LEREREREREEKEREKKRIEKEKERAREIEKEREKAR 552
            + L++E+    ++  K EE R  L+R   R      ++  R   +K   ++  K+  ++ 
Sbjct: 1159 DALEKELDKLDKEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESE 1218

Query: 553  QAVERATREARER--AAAEARLKAERAAVDKANAAARER---------AERAAVQRAQAE 601
               E     A E    A   + K    A  KA AAA+E+          +R A     + 
Sbjct: 1219 TTEETYGSSAMETENVAEVVKPKGRAGAKKKAPAAAKEKEEEDEILDLKDRLAAYNLDSA 1278

Query: 602  ARERAAAEA---RERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQR 658
              + A  E       A RAAA  +  A+         +    A  E    +R ++   ++
Sbjct: 1279 PAQSAKMEETVKAVPARRAAARKKPLASVSVISDSDDDDDDFA-VEVSLAERLKKKGGRK 1337

Query: 659  AASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSRPSSAPRPRANTSDSLFD 718
             A+  ++ A   A  +    A     Q+     L+   ++   P    R           
Sbjct: 1338 PAAANKKAAKPPAAAKKRGPATVQSGQKLLTEMLKPAEAIGISPEKKVRKMR-------- 1389

Query: 719  SQSKGGPEPARRTSVGASSNMRKASSTTNIVDDLSSIFGAAGSSAGEFQDVEGETEERRR 778
                    P  + S    S + +A++      +  S    +GSS+ E +D    + + R 
Sbjct: 1390 ------ASPFNKKS---GSVLGRAATN----KETESSENVSGSSSSE-KDEIDVSAKPRP 1435

Query: 779  ARLERHQRTQERAAKALAEKNERDLQAQRD 808
             R  R Q T   +       ++ D     D
Sbjct: 1436 QRANRKQTTYVLSDSESESADDSDFDDDED 1465

Length = 1465

>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated

 Score = 49.1 bits (117), Expect = 6e-06
 Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 21/149 (14%)

Query: 507 REKGEEQRRLEREREREREEKEREKKR-----------IEKEKERAREIEKEREKARQAV 555
           +E   EQR   RE+++E++      +R             +      EI+K R       
Sbjct: 284 KEHHAEQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTA----- 338

Query: 556 ERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAE 615
           E+   +AR++  A+ R  AER    +A         RA  +RA  +A+++   +A    +
Sbjct: 339 EKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDASPNED 398

Query: 616 RAAAEARERAN-----AEAREKEARERAS 639
             +     + +     A    +  RE + 
Sbjct: 399 TPSENEESKGSPPQVEATTTAEPNREPSQ 427

Length = 429

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 48.8 bits (117), Expect = 7e-06
 Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 4/154 (2%)

Query: 462 FRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQ--QREKGEEQRRLERE 519
                E  E +  +A   +E  + +R+ER  +++  E+  R+ Q  QR + E+    E  
Sbjct: 192 EEAEDEREELDELRADLYQE--EYERKERQKEKEEAEKRRRQKQELQRAREEQIEEKEER 249

Query: 520 REREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAV 579
            + ER E+E E++R+ +++    E+E+E  + R+      R   E+   E   +      
Sbjct: 250 LQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLEHRRELEQQIEEKEERRAAERE 309

Query: 580 DKANAAARERAERAAVQRAQAEARERAAAEARER 613
           ++     R R E A  Q    E R+R   E  E 
Sbjct: 310 EELEEGERLREEEAERQARIEEERQRLLKEHAEA 343

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|224482 COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]

 Score = 48.9 bits (117), Expect = 7e-06
 Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 17/129 (13%)

Query: 551 ARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEA 610
            R A+E+A          EA L A  A +   N  A+  + +A + +A+A+  ++A  E 
Sbjct: 89  YRAALEQA----------EAALAAAEAQLR--NLRAQLASAQALIAQAEAQDLDQAQNEL 136

Query: 611 RERAE---RAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERA 667
             RAE   R      E   A A  + A   A++A  +A   Q       + + ++A+  +
Sbjct: 137 ERRAELAQRGVVSREELDRARAALQAA--EAALAAAQAAQKQNLALLESEVSGAQAQVAS 194

Query: 668 AAEARERAA 676
           A  A ++A 
Sbjct: 195 AEAALDQAK 203

Length = 352

>gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated

 Score = 48.5 bits (116), Expect = 7e-06
 Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 6/143 (4%)

Query: 490 RATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKERE 549
           + +    +E+L     Q+ + +     E+ER RE EE++ E+ R E   E    IE+  E
Sbjct: 7   KRSNVINKEKLKTHEIQKYRFKVLSIKEKERLREEEEEQVEQLREEANDEAKEIIEEAEE 66

Query: 550 KARQAVERATREARERAA-----AEARLKAERAAVDKANAAARERAERAAVQRAQAEARE 604
            A + VE A  EA+E        A + ++  +  +++      E  ER  ++ A+AE  E
Sbjct: 67  DAFEIVEAAEEEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELER-LIEEAKAEGYE 125

Query: 605 RAAAEARERAERAAAEARERANA 627
               + RE       E  E+ N 
Sbjct: 126 EGYEKGREEGLEEVRELIEQLNK 148

Length = 281

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 48.8 bits (117), Expect = 8e-06
 Identities = 42/183 (22%), Positives = 66/183 (36%), Gaps = 16/183 (8%)

Query: 511 EEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEA 570
           EE R L  +    +  KER+ +  EK++ +A E E+ER                    E 
Sbjct: 4   EELRELNEKLRAAKVNKERDAQIEEKKRIKAEEKEEERRIDEMM-------------EEE 50

Query: 571 RLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAR 630
           RLKA     ++      ER E  AV + Q E RE+   E  E   +   E  +      R
Sbjct: 51  RLKALAEEEERERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQ---EREQMDEIIER 107

Query: 631 EKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDN 690
            +E  E  +  + E +   R E         E +E      RE         + + + + 
Sbjct: 108 IQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQREKAEREE 167

Query: 691 DLE 693
           + E
Sbjct: 168 ERE 170

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 49.3 bits (118), Expect = 8e-06
 Identities = 59/210 (28%), Positives = 87/210 (41%), Gaps = 16/210 (7%)

Query: 456 DRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQR- 514
           +  + +    +     E  +     E      EER   +D +E +    ++RE  EE+R 
Sbjct: 483 ELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERR--EDLEELIA---ERRETIEEKRE 537

Query: 515 RLERERERERE-EKEREKKRIEKEKERAREIEKEREKARQAV---ERATREARERAAAEA 570
           R E  RER  E E E E+KR     E A E E+E E+AR+ V        E +ER  +  
Sbjct: 538 RAEELRERAAELEAEAEEKR-----EAAAEAEEEAEEAREEVAELNSKLAELKERIESLE 592

Query: 571 RLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAR 630
           R++   AA+  A        E+        + R    AE RER     AE  E    EAR
Sbjct: 593 RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAR 652

Query: 631 EKEARERASVARTEAEALQ-RAERAAVQRA 659
           E + R    + + E +  + R ER  +Q  
Sbjct: 653 EDKERAEEYLEQVEEKLDELREERDDLQAE 682

Length = 880

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 49.4 bits (119), Expect = 8e-06
 Identities = 21/109 (19%), Positives = 50/109 (45%), Gaps = 8/109 (7%)

Query: 508 EKGEEQRRLEREREREREEKEREKKRIEKE-KERAREIEKEREKARQAVERATREARERA 566
              EE  R   ++  E E   +E +++++E +E+  ++++E +K  +  E+  ++A + A
Sbjct: 523 ASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEA 582

Query: 567 AAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAE 615
                 K E   + K      ++   A+V+  +     +   +A E+ E
Sbjct: 583 ------KKEADEIIK-ELRQLQKGGYASVKAHELIEARKRLNKANEKKE 624

Length = 782

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 49.3 bits (117), Expect = 8e-06
 Identities = 38/193 (19%), Positives = 73/193 (37%), Gaps = 2/193 (1%)

Query: 511 EEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEA 570
            E+R  E ERE  R E ++ ++  E  ++      +   KA+Q + R T++A++      
Sbjct: 95  GEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLK 154

Query: 571 RLKAERA-AVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEA 629
            L  +R     +A +    + +  A               + +  + A   A     A+A
Sbjct: 155 TLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQA 214

Query: 630 REKE-ARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKN 688
           R +E AR  A+  +T     QR  + + +     AR     E   +      A    ++ 
Sbjct: 215 RTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQE 274

Query: 689 DNDLESFFSMSSR 701
              LE+++    R
Sbjct: 275 VAQLEAYYQAYVR 287

Length = 499

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 49.4 bits (118), Expect = 9e-06
 Identities = 36/216 (16%), Positives = 68/216 (31%), Gaps = 14/216 (6%)

Query: 453 EAMDRAEAKFRHAKEMRERESFKA-----ARSRESVQPDREERATQQDAQERLD--REMQ 505
           E ++    +    KE  + +  K          + ++   EE    +  +E L+  RE  
Sbjct: 536 EKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERL 595

Query: 506 QREKGEEQRRLEREREREREEKEREKKRIEKEKERARE-IEKEREKARQAVERATREARE 564
           +  K + +   ER  + E   +  E    E E E A E +E E EK     E        
Sbjct: 596 KELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAA 655

Query: 565 RAAAEARLKAERAAVDK------ANAAARERAERAAVQRAQAEARERAAAEARERAERAA 618
               E +++   A + +            E+ E       + E       E  ++     
Sbjct: 656 LEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIE 715

Query: 619 AEARERANAEAREKEARERASVARTEAEALQRAERA 654
               E  + +A  +E ++         E L+     
Sbjct: 716 QLIEELESRKAELEELKKELEKLEKALELLEELREK 751

Length = 908

>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional

 Score = 48.4 bits (116), Expect = 1e-05
 Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 21/127 (16%)

Query: 589 RAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEAL 648
           R  +A + RA  + +++A  EA+ R E  A +AR       REK ARE            
Sbjct: 432 RQAKAEI-RAIEQEKKKAE-EAKARFE--ARQARLE-----REKAARE------------ 470

Query: 649 QRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSRPSSAPRP 708
            R ++AA  RAA +    AAA AR +A  AA       K     ++   +++R +   + 
Sbjct: 471 ARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQA 530

Query: 709 RANTSDS 715
           RA  ++ 
Sbjct: 531 RARQAEK 537

Length = 695

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 48.6 bits (116), Expect = 1e-05
 Identities = 49/250 (19%), Positives = 95/250 (38%), Gaps = 20/250 (8%)

Query: 448 AAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQ-ERLDREMQQ 506
            A ++E ++  E + R  +E            +E ++ ++ E+      + E L  ++Q 
Sbjct: 496 EAELREEIEELEKELRELEEELIELLELEEALKEELE-EKLEKLENLLEELEELKEKLQL 554

Query: 507 REKGEEQRRLERERER-EREEKEREKKRIEKEK-ERAREIEKEREKARQAVERATRE--- 561
           ++  EE R+LE   +  +   +E    R  KE+ E  RE  KE +K  + +E    +   
Sbjct: 555 QQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEE 614

Query: 562 ----------ARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEAR 611
                       E   AE  L++E   ++       E   +AA++  + +  E   AE R
Sbjct: 615 LLQSLELSEAENELEEAEEELESELEKLNLQAEL--EELLQAALEELEEK-VEELEAEIR 671

Query: 612 ERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEA 671
              +R   E +     E  E+   E   +     E L++           E+R+    E 
Sbjct: 672 RELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEEL 731

Query: 672 RERAAAAARA 681
           ++      +A
Sbjct: 732 KKELEKLEKA 741

Length = 908

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 48.6 bits (116), Expect = 1e-05
 Identities = 45/236 (19%), Positives = 94/236 (39%), Gaps = 16/236 (6%)

Query: 464 HAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLERERERE 523
           H KE+ E    +     E +  ++EE   +++ +E L++E+++ E+   +     E E  
Sbjct: 471 HEKELLELYELELEELEEELSREKEEAELREEIEE-LEKELRELEEELIELL---ELEEA 526

Query: 524 REEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKAN 583
            +E+  EK  +EK +    E+E+ +EK +    +      E    E RL+  +  +++  
Sbjct: 527 LKEELEEK--LEKLENLLEELEELKEKLQLQQLKE-----ELRQLEDRLQELKELLEELR 579

Query: 584 AAARERAERAAVQRAQAEARER-AAAEARERAERAAAEARERANAEAREKEARERASVAR 642
                + E   ++    E +++    E R        ++ E + AE   +EA E      
Sbjct: 580 LLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESEL 639

Query: 643 TEAEA---LQRAERAAVQRAASEARERAAAEARERAAAAARAN-QNQQKNDNDLES 694
            +      L+   +AA++    +  E  A   RE          + + +    LE 
Sbjct: 640 EKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEE 695

Length = 908

>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein

 Score = 48.8 bits (116), Expect = 1e-05
 Identities = 35/193 (18%), Positives = 84/193 (43%), Gaps = 9/193 (4%)

Query: 428 NEYGEVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDR 487
           N      S  D +S        A++E  ++     R   +++ERES + A+  + ++ + 
Sbjct: 163 NILSGNVSDVDTDSISDKKVVEALREDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEEL 222

Query: 488 EERATQQD-AQERLDR-----EMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERA 541
           +++    D AQ++ D      + Q+ E  ++Q+  +   +       +E K++ + ++R 
Sbjct: 223 DKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKRE 282

Query: 542 RE-IEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAA-VQRAQ 599
            E  + E +K  +   +A          E++  +E+ A DK   A ++R   A  +Q+ +
Sbjct: 283 IEKAQIEIKKNDEEALKAKDHKAFDLKQESK-ASEKEAEDKELEAQKKREPVAEDLQKTK 341

Query: 600 AEARERAAAEARE 612
            +   +  +   +
Sbjct: 342 PQVEAQPTSLNED 354

This family consists of several Borrelia P83/P100 antigen proteins. Length = 489

>gnl|CDD|180240 PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated

 Score = 45.9 bits (110), Expect = 1e-05
 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 11/91 (12%)

Query: 601 EARERAAAEARERAERAAAEARERANAEARE--KEARERASVARTEAEALQRAERAAVQR 658
           E R++  A+    AERA  E  E A A+      EAR  A+    +A+     +RAA   
Sbjct: 34  EERQKKIADGLAAAERAKKEL-ELAQAKYEAQLAEARAEAAEIIEQAK-----KRAAQII 87

Query: 659 AASEARERAAAEARERAAAAARANQNQQKND 689
              EA+  A AEA  R  A A+A   Q++  
Sbjct: 88  E--EAKAEAEAEA-ARIKAQAQAEIEQERKR 115

Length = 156

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 48.1 bits (115), Expect = 2e-05
 Identities = 46/235 (19%), Positives = 83/235 (35%), Gaps = 16/235 (6%)

Query: 437 EDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDA 496
              E +   A    ++E ++ AE +   A+   E    +  + +E ++  RE     +  
Sbjct: 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE 811

Query: 497 QERLDREMQQREKGEEQRRLEREREREREEKERE--KKRIEKEKERAREIEKEREKARQA 554
              L+ E     +  E      ER     E+  E  +++IE+  E    +  E E+  + 
Sbjct: 812 LTLLNEEAANLRERLESL----ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL 867

Query: 555 VERATREA----RERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEA 610
           +E    E      ERA+ E  L   R+ +++ +   RE    +     + E  E     A
Sbjct: 868 IEELESELEALLNERASLEEALALLRSELEELSEELRE--LESKRSELRRELEELREKLA 925

Query: 611 RERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARE 665
           +        E R     E       E  S+   EAEAL+       + A    + 
Sbjct: 926 QLELRLEGLEVRIDNLQER----LSEEYSLTLEEAEALENKIEDDEEEARRRLKR 976

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.2 bits (115), Expect = 2e-05
 Identities = 36/193 (18%), Positives = 69/193 (35%), Gaps = 5/193 (2%)

Query: 437 EDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDA 496
           E+++  I A      +      E +   A+    +E  +   S        E     +  
Sbjct: 326 EELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSAL----LEELEELFEAL 381

Query: 497 QERLDREMQQREKGEEQRR-LEREREREREEKEREKKRIEKEKERAREIEKEREKARQAV 555
           +E L     +  +   +   L+RE E   E  ER  +R+E  KE  +E+E E E+ +  +
Sbjct: 382 REELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTEL 441

Query: 556 ERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAE 615
           E    E  E       L+     +++  A  +E  +R   + +  EAR       +  ++
Sbjct: 442 EELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQ 501

Query: 616 RAAAEARERANAE 628
              A      +  
Sbjct: 502 GVRAVLEALESGL 514

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 48.2 bits (115), Expect = 2e-05
 Identities = 52/268 (19%), Positives = 91/268 (33%), Gaps = 9/268 (3%)

Query: 435 SPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQ 494
             E +E          ++E     E      + + E E  +     E ++  R      +
Sbjct: 260 EIESLELEALKIREEELRELERLLEELEEKIERLEELER-EIEELEEELEGLRALLEELE 318

Query: 495 DAQERLDREMQQREKGEEQRR-LEREREREREEKEREKKRIEKEKERAREIEKEREKARQ 553
           +  E+L    ++ EK EE+   LE E E   EEK    K +E   ER +E+E+  E+  +
Sbjct: 319 ELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLE---ERLKELEERLEELEK 375

Query: 554 AVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARER 613
            +E+A    ++   A   LK E A +  A    +E  E    +  + E       E  ++
Sbjct: 376 ELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKK 435

Query: 614 AERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARE 673
            E    +   +    A    A E+  V   E   L       +        E    E   
Sbjct: 436 LEEQINQLESKELMIAELAGAGEKCPVCGQE---LPEEHEKELLELYELELEE-LEEELS 491

Query: 674 RAAAAARANQNQQKNDNDLESFFSMSSR 701
           R    A   +  ++ + +L         
Sbjct: 492 REKEEAELREEIEELEKELRELEEELIE 519

Length = 908

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 47.7 bits (113), Expect = 2e-05
 Identities = 46/226 (20%), Positives = 87/226 (38%), Gaps = 13/226 (5%)

Query: 474 FKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLERERERER--------- 524
           F+    R  ++  R E  T Q  +   + E +      ++ R ERE  R+          
Sbjct: 74  FQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLA 133

Query: 525 ---EEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDK 581
              +E  R  K+ +  + R + + ++R +     +      ++  A+  +LK++   +  
Sbjct: 134 KAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKL 193

Query: 582 ANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERAN-AEAREKEARERASV 640
            +A   + A+  A +   A+AR    A     A++ A   ++R      + ++   RA  
Sbjct: 194 RSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQ 253

Query: 641 ARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQ 686
            R     LQR E A  +     A+  A  +A  R    A A Q  Q
Sbjct: 254 IRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQAAATQRGQ 299

Length = 499

>gnl|CDD|180240 PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 527 KEREKKRIEKEKERAREIEKEREKARQAVERATREARERAA---AEARLKAERAAVDKAN 583
           +ER+KK I      A   +KE E A+   E    EAR  AA    +A+ K     +++A 
Sbjct: 34  EERQKK-IADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAK-KRAAQIIEEAK 91

Query: 584 AAARERAERAAVQRAQAEA---RERAAAEARE 612
           A A   A R    +AQAE    R+RA  E R+
Sbjct: 92  AEAEAEAAR-IKAQAQAEIEQERKRAREELRK 122

Length = 156

>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein [Function unknown]

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 57/248 (22%), Positives = 101/248 (40%), Gaps = 21/248 (8%)

Query: 443 IAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDR 502
                A+ + E  D   AK    +E+RE+         E  +  +E +  + +   +L  
Sbjct: 31  ELRKEASELAEKRDELNAK---VRELREKAQELREERDEINEEVQELKEKRDEINAKLQE 87

Query: 503 EMQQREKGEEQRRLEREREREREEKEREKKRIEKE-------KERAREIEKEREKARQAV 555
             ++  + +E+R       R  +  ERE +R+EK+        E  RE+ ++ ++ R+ +
Sbjct: 88  LRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKEL 147

Query: 556 ERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARE-----RAAAEA 610
           E A ++A E       LKAE   + K      E+ +  A   AQ    E       A E 
Sbjct: 148 EDA-KKALEENEKLKELKAEIDELKKKAREIHEKIQELA-NEAQEYHEEMIKLFEEADEL 205

Query: 611 RERAERAAAEARE-RANAEAREKEARERASVAR---TEAEALQRAERAAVQRAASEARER 666
           R+ A+    E  E     +   +E R   +  R    + +AL+  E+AA +R   E  + 
Sbjct: 206 RKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRREKREELKE 265

Query: 667 AAAEARER 674
            A E  E+
Sbjct: 266 RAEEIYEK 273

Length = 294

>gnl|CDD|116627 pfam08017, Fibrinogen_BP, Fibrinogen binding protein

 Score = 47.5 bits (112), Expect = 2e-05
 Identities = 48/220 (21%), Positives = 96/220 (43%), Gaps = 12/220 (5%)

Query: 466 KEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLERERERERE 525
           +  R+ E+       E  Q D E R +Q +  ER  R+++ + +G    R +R+ E + +
Sbjct: 65  RRQRDAENRSQGNVLERRQRDAENR-SQGNVLERRQRDVENKSQGNVLERRQRDVENKSQ 123

Query: 526 EKEREKKRIEKEKE------RAREIEKEREKARQAVERATREARERAAAEARLKAERAAV 579
               E+++ + E          R+ + E +     +ER  R+A  R+      + +R   
Sbjct: 124 GNVLERRQRDAENRSQGNVLERRQRDAENKSQGNVLERRQRDAENRSQGNVLERRQRDVE 183

Query: 580 DKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREK----EAR 635
           +K+     ER +R    ++Q    ER   +A  R++    E R+R + E + +    E R
Sbjct: 184 NKSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQR-DVENKSQGNVLERR 242

Query: 636 ERASVARTEAEALQRAERAAVQRAASEARERAAAEARERA 675
           +R    +++   L+R +R A  R+     ER   +   ++
Sbjct: 243 QRDVENKSQGNVLERRQRDAENRSQGNVLERRQRDVENKS 282

Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation. Length = 393

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 47.9 bits (114), Expect = 3e-05
 Identities = 54/253 (21%), Positives = 86/253 (33%), Gaps = 26/253 (10%)

Query: 449 AAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQRE 508
           A  +     A+A     + ++   +++ A   E  + D E          +  RE + R 
Sbjct: 304 ARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQAIREAESRL 363

Query: 509 KGEEQRRL----------EREREREREEKEREKKR--------IEKEKERAREIEKEREK 550
           + EE+RRL          ERE    RE+  R  +R         E +   A +  +E   
Sbjct: 364 E-EERRRLDEEAGRLDDAERELRAAREQLARAAERAGLSPAHTAEPDAALAAQELQELGA 422

Query: 551 ---ARQAVERATREARERAAAEARLKAERAAVDKANAAARERAER----AAVQRAQAEAR 603
               RQ  +R   +  E+ A   R        +  +AAAR R +     A    A+AE  
Sbjct: 423 LDARRQDADRVIAQRSEQVALLRRRDDVADRAEATHAAARARRDELDEEAEQAAARAELA 482

Query: 604 ERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEA 663
           + A      R     A   +         + +  A       +AL + E        S  
Sbjct: 483 DEAVHREGARLAWVDAWQAQLRELTILAVDDQPGALADLDSWDALLQGEAPVRVAVYSAV 542

Query: 664 RERAAAEARERAA 676
           +  A    RERAA
Sbjct: 543 QPLADELTRERAA 555

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional

 Score = 47.4 bits (113), Expect = 3e-05
 Identities = 37/169 (21%), Positives = 68/169 (40%), Gaps = 9/169 (5%)

Query: 445 AASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREM 504
           A  A  + +   +   +   A  +  +E     R+++  Q  R ER   Q  +ERL ++ 
Sbjct: 32  AKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQR-QEARREREELQREEERLVQKE 90

Query: 505 QQREKGEEQRRLEREREREREEK--EREKKRIEKEKERAREIEKEREKARQAVERATREA 562
           +Q +   E+      +  ERE+    RE +  E EK+   E+      A    E+A +  
Sbjct: 91  EQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELY---RVAGLTPEQARKLL 147

Query: 563 RERAAAEARLKAE---RAAVDKANAAARERAERAAVQRAQAEARERAAA 608
            +   AE   +     +   ++A+  A  +A+    Q  Q  A E A+ 
Sbjct: 148 LKLLDAELEEEKAQRVKKIEEEADLEAERKAQNILAQAMQRIASETASD 196

Length = 508

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 47.7 bits (113), Expect = 3e-05
 Identities = 47/284 (16%), Positives = 97/284 (34%), Gaps = 16/284 (5%)

Query: 459 EAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLER 518
           + +   +K+  E+E    A+  +     +EE   ++  +E L    ++ E+ + +     
Sbjct: 251 QEEIESSKQELEKEEEILAQVLKEN---KEEEKEKKLQEEELKLLAKEEEELKSELLKLE 307

Query: 519 EREREREEK----EREKKRIEKEKERAREIEKEREKARQAVE--RATREARERAAAEARL 572
            R+ + EEK    E+E K++EKE ++ +E  +E EK  + +E  R   E  E    + + 
Sbjct: 308 RRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQE 367

Query: 573 KAERAA------VDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERAN 626
           K E+            +      A+    +       E+ A    E +E+     +E   
Sbjct: 368 KLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKK 427

Query: 627 AEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQ 686
            E +  E  E +   +      ++ E    Q       +    ++ +           +Q
Sbjct: 428 EELKIVEELEESLETKQGKLTEEKEEL-EKQALKLLKDKLELKKSEDLLKETKLVKLLEQ 486

Query: 687 KNDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPARR 730
                L      +S+  S  R       +L           A  
Sbjct: 487 LELLLLRQKLEEASQKESKAREGLAVLLALIKDGVGLRIISAAG 530

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 32/154 (20%), Positives = 63/154 (40%), Gaps = 11/154 (7%)

Query: 494 QDAQERLDREMQQREKGEEQRRLERERERER---------EEKEREKKRIEKEKERAREI 544
           +D QE L  E + +E   E++R E ER  E+            +   + + +E +   E 
Sbjct: 193 EDHQELLQEEYE-KEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEE 251

Query: 545 EKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAAR-ERAERAAVQRAQAEAR 603
           E + E A +  E       +    + + KA+R    +     R  + E+   ++    AR
Sbjct: 252 ESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLAR 311

Query: 604 ERAAAEARERAERAAAEARERANAEAREKEARER 637
            +  A+   + E+A A  +E+      +K+ + R
Sbjct: 312 LKEIAKEVAQKEKARARKKEQRKERGEKKKLKRR 345

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 46.8 bits (112), Expect = 4e-05
 Identities = 41/180 (22%), Positives = 80/180 (44%), Gaps = 23/180 (12%)

Query: 450 AMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREK 509
             ++ +  AE   +   E  ++E+      +E++   +EE    +   ER  +E +   +
Sbjct: 22  IAEKKLGSAEELAKRIIEEAKKEA--ETLKKEALLEAKEEVHKLRAELERELKERRNELQ 79

Query: 510 GEEQRRLERE----------REREREEKEREKKRIEKEK---ERAREIEKEREKARQAVE 556
             E+R L+RE           ++E   +++EK+   KEK   E+  E+E+   + R+ +E
Sbjct: 80  RLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELE 139

Query: 557 RA----TREARER--AAAEARLKAERAA-VDKANAAARERAERAAVQRAQAEARERAAAE 609
           R       EA+E      E   + E A  + +    A+E A++ A +   A A +R A +
Sbjct: 140 RISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEAKEEADKKA-KEILATAIQRYAGD 198

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 47.4 bits (113), Expect = 4e-05
 Identities = 47/300 (15%), Positives = 102/300 (34%), Gaps = 38/300 (12%)

Query: 524 REEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAE--ARLKAERAAVDK 581
           RE  ++ ++ ++    + ++ E++  +A   +E   R   E   A   ARL  +R   ++
Sbjct: 606 RERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQNEQ 665

Query: 582 ANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVA 641
                  ++ +  ++ A AE +++A  + R+   +      ++       K+        
Sbjct: 666 -------QSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDDFRELRTE 718

Query: 642 RTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSR 701
           R     +   E          A+  AA EA  R  A AR  + +++ D +L S       
Sbjct: 719 RLAKWQVVEGELDN-----QLAQLSAAIEAA-RTQAKARLKELKKQYDRELAS------- 765

Query: 702 PSSAPRPRANTSDSLFDSQSKGGPEPARRTSVGASSNMRKASSTTNIVDDLSSIFGAAGS 761
                       D     + K   E    T    +    +          +   +    S
Sbjct: 766 ---------LDVDPNTVKELKRQIEELETTIERIAVRRPEV---REYRAFMQETWLHRDS 813

Query: 762 SAGEFQDVEGETEERRRA--RLERHQRTQERAAKALAEKNERDLQAQRDQAERHRIAETL 819
              E  ++  +  E   +   L++      +  K   +K E++ +A   Q    ++ E L
Sbjct: 814 LREERPNLAIQLRELESSAEELQQELTRLIKDTKLRRKKLEQERKALEKQL--DQLDELL 871

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 46.9 bits (111), Expect = 4e-05
 Identities = 51/235 (21%), Positives = 89/235 (37%), Gaps = 16/235 (6%)

Query: 452 KEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQ-QDAQERLDREMQQREKG 510
           +EA      K R  +E   +E   A ++    Q +      Q QD Q RL    +QR + 
Sbjct: 104 REAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQL 163

Query: 511 EEQRRL----EREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERA 566
           E Q +     +++ +    + + +   ++    +  +  +       A +  T E   RA
Sbjct: 164 EAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRA 223

Query: 567 AAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAE---ARERAERAAAEARE 623
           AA    +    A+ + +A   ++A++ A +  Q   RER       A+ R E+  A+   
Sbjct: 224 AA---AQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEA 280

Query: 624 RANAEAREKEARERASVARTEAEALQRAERAAVQRAA-----SEARERAAAEARE 673
              A  R ++        +  A A QR  +A  Q  A     S A   AA   R 
Sbjct: 281 YYQAYVRLRQQAAATQRGQVLAGAAQRVAQAQAQAQAQAQLLSSANRPAALRLRR 335

Length = 499

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 3/145 (2%)

Query: 543 EIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEA 602
           E E + EK RQ +ER   +  E+ A EA    E +          +           A  
Sbjct: 204 EKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLE---ESDDDGEEESDDESAWE 260

Query: 603 RERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASE 662
              +  E   +  R   + + + N E R KE    A   +   + L +  R         
Sbjct: 261 GFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVA 320

Query: 663 ARERAAAEARERAAAAARANQNQQK 687
            +E+A A  +E+        + +++
Sbjct: 321 QKEKARARKKEQRKERGEKKKLKRR 345

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|237110 PRK12472, PRK12472, hypothetical protein; Provisional

 Score = 46.8 bits (111), Expect = 4e-05
 Identities = 51/144 (35%), Positives = 69/144 (47%), Gaps = 10/144 (6%)

Query: 548 REKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAA 607
            E    A  RA   ARE  A +A   A+ A    A AAARE A   A  R    A+ RA 
Sbjct: 182 AEALAAAPARAETLARE--AEDAARAADEAK-TAAAAAAREAAPLKASLRKLERAKARAD 238

Query: 608 AEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERA 667
           AE + RA++A A A+    A+AR +E +++A+    EA     A +    +A +EA+  A
Sbjct: 239 AELK-RADKALAAAKTD-EAKARAEERQQKAAQQAAEA-----ATQLDTAKADAEAKRAA 291

Query: 668 AAEARERAAAAARANQNQQKNDND 691
           AA  +E A AAA       K   D
Sbjct: 292 AAATKEAAKAAAAKKAETAKAATD 315

Length = 508

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 47.0 bits (112), Expect = 5e-05
 Identities = 34/194 (17%), Positives = 61/194 (31%), Gaps = 6/194 (3%)

Query: 446 ASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQ 505
           A    +KE +          +      + +AA  RE ++      A  +   E L+ +++
Sbjct: 789 AQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848

Query: 506 QREKGEEQRRLERERERE-REEKEREKKRIEKEKERAREIEKEREKARQAVERATREARE 564
           +  +  E    E E   E  EE E E + +  E+    E         + +    RE   
Sbjct: 849 ELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908

Query: 565 RAAAEARLKAERAAVDKANAAARERAERAAVQRA--QAEARERAAAEARERAERAAAEAR 622
           +    + L+ E   + +  A    R E   V+    Q    E  +    E          
Sbjct: 909 KR---SELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIED 965

Query: 623 ERANAEAREKEARE 636
           +   A  R K    
Sbjct: 966 DEEEARRRLKRLEN 979

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein

 Score = 46.5 bits (110), Expect = 5e-05
 Identities = 31/173 (17%), Positives = 75/173 (43%), Gaps = 8/173 (4%)

Query: 500 LDREMQQREKGEEQRR-----LEREREREREEKEREKKRIEKEKERAREIEKEREKARQA 554
           ++   +  EKG   RR      ERE + + +  ++ K+ ++K++  A + +++ + A+  
Sbjct: 183 VEALREDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDN 242

Query: 555 VERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERA 614
            ++   E R++      L                  ++  +++AQ E  ++   EA +  
Sbjct: 243 ADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEI-KKNDEEALKAK 301

Query: 615 ERAAAEARERANAEAREKEARERASVARTE--AEALQRAERAAVQRAASEARE 665
           +  A + ++ + A  +E E +E  +  + E  AE LQ+ +     +  S   +
Sbjct: 302 DHKAFDLKQESKASEKEAEDKELEAQKKREPVAEDLQKTKPQVEAQPTSLNED 354

This family consists of several Borrelia P83/P100 antigen proteins. Length = 489

>gnl|CDD|180240 PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated

 Score = 44.0 bits (105), Expect = 5e-05
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 6/96 (6%)

Query: 588 ERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEA 647
           ER ++ A   A AE  ++    A+ + E   AEAR  A AE  E +A++RA+    EA+A
Sbjct: 35  ERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEA-AEIIE-QAKKRAAQIIEEAKA 92

Query: 648 LQRAERAAVQRAASE----ARERAAAEARERAAAAA 679
              AE A ++  A       R+RA  E R++ A  A
Sbjct: 93  EAEAEAARIKAQAQAEIEQERKRAREELRKQVADLA 128

Length = 156

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 46.9 bits (111), Expect = 5e-05
 Identities = 30/228 (13%), Positives = 77/228 (33%), Gaps = 13/228 (5%)

Query: 466 KEMRERESFKAARSRESVQPDREERAT--QQDAQERLDREMQQREKGEEQRRLERERERE 523
           KE  ++         +    +         +  +ER+D   +     +E+    ++   +
Sbjct: 204 KEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEK 263

Query: 524 REEKEREKKRIEKEKERAREIEKEREK---ARQAVERATREARERAAAEARLKAERAAVD 580
            EE   +  +  KE+E+ +++++E  K     +   ++     ER   +   K + +  +
Sbjct: 264 EEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKE 323

Query: 581 KANAAARERAERAAVQRAQAE--------ARERAAAEARERAERAAAEARERANAEAREK 632
                   + E+  ++  + E          E    E  E+ +    +  E   A+ + +
Sbjct: 324 LKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLE 383

Query: 633 EARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAAR 680
             R  ++    E E   + E     +   E  E+     +E      +
Sbjct: 384 SERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELK 431

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 46.6 bits (111), Expect = 5e-05
 Identities = 48/252 (19%), Positives = 93/252 (36%), Gaps = 40/252 (15%)

Query: 448 AAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQR 507
           A A+ +  +    + +   E  ER        R     +  ER  +++++ + + E  +R
Sbjct: 391 AEALSKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKR 450

Query: 508 EKGEEQRRLEREREREREEKEREK-------------KRIEKEKERAREIEKEREKARQ- 553
           E  + +  LER R   R++  +++             K +E++K+R  E+E++  + R+ 
Sbjct: 451 EIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKM 510

Query: 554 -------------AVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQ- 599
                         VE+ T EA E A  E  +K     +        E       + A+ 
Sbjct: 511 RKLELSGKGTPVKVVEKLTLEAIEEAEEEYGIKEGDVIL-------VEDPSGGGARTAEE 563

Query: 600 -AEARERAAAEARERAERAAAEARERANA---EAREKEARERASVARTEAEALQRAERAA 655
             + + RA     E    AAAE   +         + +       A  ++E L+RA    
Sbjct: 564 LIDKKPRAIIRG-EEMSHAAAEEFFKNEIPVLPEGDVQIIRLDEFAVVDSEELRRAIEEW 622

Query: 656 VQRAASEARERA 667
            +R     R + 
Sbjct: 623 KKRFEERERRQK 634

Length = 652

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 46.6 bits (111), Expect = 5e-05
 Identities = 47/226 (20%), Positives = 94/226 (41%), Gaps = 19/226 (8%)

Query: 428 NEYGEVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDR 487
            EY +     +   S        ++E +   E K    +E++++   +  +  E ++   
Sbjct: 303 EEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLK-ELEKRLEELEERH 361

Query: 488 EERATQQDAQERLDREMQQREKGEEQRRLERE---REREREEKEREKKRIEKEKERAREI 544
           E     +  +E L+R +++R  G    +LE+E    E+ +EE E E  +I       ++ 
Sbjct: 362 ELYEEAKAKKEELER-LKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKE 420

Query: 545 EKEREKARQAVERA-----------TREARERAAAEARLKAERAAVDKANAAARERAERA 593
            KE +KA + +++A           T E R+    E   + +R   +      +ER  R 
Sbjct: 421 IKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRK 480

Query: 594 AVQRAQAE-ARERAAAEARERAE--RAAAEARERANAEAREKEARE 636
            ++  +    +E    + +E AE  +   E  ++ N E  EK+A E
Sbjct: 481 ELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEE 526

Length = 880

>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

 Score = 45.5 bits (108), Expect = 6e-05
 Identities = 34/119 (28%), Positives = 44/119 (36%), Gaps = 25/119 (21%)

Query: 573 KAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREK 632
           +  +AA++K  AA  ER +RA +  A+ E     AA  R   E  AA     A AEA   
Sbjct: 173 EEVQAAMEKQMAA--ERDKRAEILEAEGE---AQAAILRAEGEAEAAIILAEAEAEA--- 224

Query: 633 EARERASVARTEAEALQRAERAAVQRAASEARERAAAEA----RERAAAAARANQNQQK 687
                        E + RAE  A +  A+  RE  AA      R        A     K
Sbjct: 225 -------------EVIARAEADAAKIIAAALREAPAAPQALAQRYLEELLEIALAGNSK 270

Length = 291

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.0 bits (109), Expect = 8e-05
 Identities = 30/131 (22%), Positives = 38/131 (29%)

Query: 551 ARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEA 610
           A  A  RA       A      + + AA   A   A+  A  +A  R      +  A   
Sbjct: 416 AAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSG 475

Query: 611 RERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAE 670
              A  + A          R          A  +A A   A R     AA+     A   
Sbjct: 476 SASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPP 535

Query: 671 ARERAAAAARA 681
               AA AARA
Sbjct: 536 TPAAAAPAARA 546

Length = 830

>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional

 Score = 45.6 bits (108), Expect = 9e-05
 Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)

Query: 515 RLEREREREREEKEREKKRIEKE-----KERAR----EIEKEREKARQAVERATREARER 565
           + ER+ E  ++  +RE K ++KE     KE AR    EIE+E +  RQ +++      ER
Sbjct: 50  KAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQIESRLTER 109

Query: 566 AAAEAR----LKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARER-AERAAAE 620
           A +  R    L ++   ++    +  ++++    +  Q E  E       ER A  + AE
Sbjct: 110 ATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAE 169

Query: 621 ARERANAEAREKEARERASVAR-TEAEALQRAERAAVQRAASEARERAAAE 670
           ARE   AE   K   E A+  R  E E   R+++ A +   ++A +R A E
Sbjct: 170 AREIILAETENKLTHEIATRIREAEREVKDRSDKMA-KDLLAQAMQRLAGE 219

Length = 535

>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production and conversion]

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 13/134 (9%)

Query: 538 KERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQR 597
            ER  +I  +  +A +  E A       A  E  L+  R    +    A++ AE+ A   
Sbjct: 36  DERQAKIADDLAEAERLKEEA---QALLAEYEQELEEAREQASEIIEQAKKEAEQIA--- 89

Query: 598 AQAEARERAAAEARERAERAAAE---ARERANAEAREKEARERASVART--EAEALQRAE 652
              E +  A  E     E A AE    +ERA  E R + A    ++A      +  + A+
Sbjct: 90  --EEIKAEAEEELERIKEAAEAEIEAEKERALEELRAEVAELAVAIAEKLLGKKVDEAAQ 147

Query: 653 RAAVQRAASEARER 666
           +  +    +E  E 
Sbjct: 148 KDLIDAFIAELGEN 161

Length = 161

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 6/140 (4%)

Query: 469 RERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKE 528
            E++  +  R  E         A++ D       E       + +   + E   E  E E
Sbjct: 209 AEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLE---ESDDDGEEESDDESAWEGFESE 265

Query: 529 REKKRIEKEKERAREIEKEREKARQAVER---ATREARERAAAEARLKAERAAVDKANAA 585
            E        +R  + ++ +EK R+ +ER     ++ +++ A  ARLK     V +   A
Sbjct: 266 YEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKA 325

Query: 586 ARERAERAAVQRAQAEARER 605
              + E+   +  + + + R
Sbjct: 326 RARKKEQRKERGEKKKLKRR 345

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|180941 PRK07352, PRK07352, F0F1 ATP synthase subunit B; Validated

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 6/119 (5%)

Query: 572 LKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEARE 631
           L+  R A+ +A   A ER  +AA   A+A+ +    A+A++ AER  A+A+ RA A   E
Sbjct: 48  LEERREAILQALKEAEERLRQAAQALAEAQQK---LAQAQQEAERIRADAKARAEAIRAE 104

Query: 632 KEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAA--ARANQNQQKN 688
            E +    +AR +  A      A  +R  ++ R  AA  A  +A +    R +++ Q+ 
Sbjct: 105 IEKQAIEDMARLKQTAAADL-SAEQERVIAQLRREAAELAIAKAESQLPGRLDEDAQQR 162

Length = 174

>gnl|CDD|224755 COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 12/188 (6%)

Query: 497 QERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKERE-KARQAV 555
            +  D E    +   +      +  +   +    +K++E++ E A+   ++ E KA  A+
Sbjct: 20  DKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELAL 79

Query: 556 ERATRE-ARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERA 614
           +    + ARE    +  L+    A++     A E+ E+   Q A  E +         RA
Sbjct: 80  QAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAEL-----RA 134

Query: 615 ERAAAEARERANAEAREKEARERASVARTEA-EALQRAERAAVQRAASEARERAAAEARE 673
           ++ A +AR+ A A+A+EK  R     + + A  A +R E    +R   EAR  AAAE  E
Sbjct: 135 KKEALKARKAA-AKAQEKVNRSLGGGSSSSAMAAFERMEEKIEER---EARAEAAAELAE 190

Query: 674 RAAAAARA 681
            +      
Sbjct: 191 GSGDDLDK 198

Length = 225

>gnl|CDD|213754 TIGR02971, heterocyst_DevB, ABC exporter membrane fusion protein, DevB family

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 33/158 (20%), Positives = 53/158 (33%), Gaps = 8/158 (5%)

Query: 539 ERAREIEKEREKARQAVERATREARERAAAEARLK--AERAAVDKANAAARERAERAAVQ 596
           +   E   E + AR  ++ A     +  A   + +  A+RAA   A       A++A + 
Sbjct: 48  DSRPERTAELDVARTQLDEAKARLAQVRAGAKKGEIAAQRAARAAAKLFKDVAAQQATLN 107

Query: 597 RAQAEARERAAAEARERAERAAAEARERA--NAEAREKEARERASVARTEAEALQRAERA 654
           R +AE         R R+             +   + + A E    A           RA
Sbjct: 108 RLEAELETAQREVDRYRSLFRDGAVSASDLDSKALKLRTAEEELEEALASRSEQIDGARA 167

Query: 655 AVQRAASEARE----RAAAEARERAAAAARANQNQQKN 688
           A+   A E RE     A AE +    A  +A    +  
Sbjct: 168 ALASLAEEVRETDVDLAQAEVKSALEAVQQAEALLELT 205

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members. Length = 327

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 44.8 bits (106), Expect = 2e-04
 Identities = 58/292 (19%), Positives = 82/292 (28%), Gaps = 39/292 (13%)

Query: 533 RIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAV--DKANAAARERA 590
           R      R  E++         +    RE R   A +  L  E A    D++  AA  RA
Sbjct: 736 RERARLRRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRA 795

Query: 591 ERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQR 650
             A  Q   AE     AA     A  A  +AR     +A + +             AL+R
Sbjct: 796 AEAERQAESAERELARAARKAAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLALKR 855

Query: 651 AERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSRPSSAPRPRA 710
                         E A  E R  A  AA       + ++D             A   RA
Sbjct: 856 FGDHL------HTLEVAVRELRHAATRAAEQRARAARAESDARE------AAEDAAEARA 903

Query: 711 NTSDSLFDSQSKGGPEPARRTSVGASSNMRKASSTTNIVDDLSSIFGAAGSSAGEFQDVE 770
                  +++           SVGA  +         I   L+                 
Sbjct: 904 -------EAEEASLRLRTLEESVGAMVD--------EIRARLAET-------RAALASGG 941

Query: 771 GETEERRRARL---ERHQRTQERAAKALAEKNERDLQAQRDQAERHRIAETL 819
            E      A     E   R +E+ A+A A  +ER         +    A T 
Sbjct: 942 RELPRLAEALATAEEARGRAEEKRAEADATLDERAEARDHAIGQLREFALTG 993

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 44.8 bits (106), Expect = 2e-04
 Identities = 52/263 (19%), Positives = 73/263 (27%), Gaps = 57/263 (21%)

Query: 444  AAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDRE 503
            AA  AA  +    RAE+  R A E       +A  +   ++    E +      E   R 
Sbjct: 873  AATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRT--LEESVGAMVDEIRARL 930

Query: 504  MQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREAR 563
             + R       R            E  + R E+++  A     ER +AR       RE  
Sbjct: 931  AETRAALASGGRELPRLAEALATAEEARGRAEEKRAEADATLDERAEARDHAIGQLREFA 990

Query: 564  ERAAAEARLK-----------AERAAVDKANAAARERAERAAVQRAQAEARERAAAEARE 612
                 E  L               AA+  A        + A    A   A  R + E  E
Sbjct: 991  LTGLLEDALPDTEVPELDAKWTIEAALKVARRTEAALLQVADDDEALDRAANRISEEYLE 1050

Query: 613  ---------------------------------------RAERAAAEARERANAEAREKE 633
                                                   R E+  A+ RE     ARE+E
Sbjct: 1051 LRRTLAALGDDAQMEPADDGLVVSLVYQGRPVTPAGLLARLEQEIAQRRELLT--ARERE 1108

Query: 634  ARER---ASVARTEAEALQRAER 653
              E      +AR     +  AER
Sbjct: 1109 LLENHLQGEIARHLQSLILAAER 1131

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 44.4 bits (106), Expect = 2e-04
 Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 25/176 (14%)

Query: 488 EERATQQDAQERLDREMQQREK----GEEQRRLEREREREREEKEREKKRIEKEKERA-- 541
           EE A +   + + + E  ++E      EE  +L  E E+E  E+  E     ++ E+   
Sbjct: 37  EEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNE----LQKLEKRLL 92

Query: 542 -RE--IEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRA 598
            +E  ++++ E   +  E   ++ +E    +  L+ +   +++      +  ER +    
Sbjct: 93  QKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERIS-GLT 151

Query: 599 QAEARERAAAEARERAERAAA----EARERANAEAREKEARERASVARTEAEALQR 650
             EA+E    +  E A   AA    E  E A  EA +K+A+E        A+A+QR
Sbjct: 152 AEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEA-DKKAKE------ILAQAIQR 200

Length = 520

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 39/235 (16%), Positives = 73/235 (31%), Gaps = 8/235 (3%)

Query: 438 DVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQ 497
            +E+ IA+  A  ++ A D  + + +   ++  R    A   +E  Q  R         +
Sbjct: 70  SLETEIASLEAQLIETADDLKKLR-KQIADLNARL--NALEVQEREQRRRLAEQLAALQR 126

Query: 498 ERLDREMQQREKGEEQRRLERERERERE---EKEREKKRIEKEKERAREIEKEREKARQA 554
              +         E+ +R  R           +      ++   ++   +  E    +  
Sbjct: 127 SGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAE 186

Query: 555 VERATREARERAAAEARLKAERA-AVDKANAAARERAERAAVQRAQAEARERAAAEARER 613
           +     E R + A  A+L  ER   + + N+      ++    RA     +   A A   
Sbjct: 187 LTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAA 246

Query: 614 AERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAA 668
           A +A  EA   A A A    A E      T           +        R + A
Sbjct: 247 AAKAR-EAAAAAEAAAARARAAEAKRTGETYKPTAPEKMLISSTGGFGALRGQLA 300

Length = 420

>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated

 Score = 44.8 bits (106), Expect = 2e-04
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 2/117 (1%)

Query: 459 EAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQER-LDREMQQREKGEEQRRLE 517
           E K+    E +E  + + A+ RE  +  +    T +  + R +    +  E   E   ++
Sbjct: 274 ERKYPLTDEFKEHHAEQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIK 333

Query: 518 REREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKA 574
           + R  E+ E +  KK I  +K RA E E  RE  ++      R    RAA +A+ K 
Sbjct: 334 KTRTAEKNEAKARKKEI-AQKRRAAEREINREARQERAAAMARARARRAAVKAKKKG 389

Length = 429

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 8/142 (5%)

Query: 498 ERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKE--REKARQAV 555
           E  D E +   + +E ++LE E ++  EE    +KR+E+ ++   E+EK+   E+  +  
Sbjct: 606 ELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELR 665

Query: 556 ERATREARERAAAEARLKAERAAVDKANAAARE-RAERAAVQRAQAEAR--ERAAA---E 609
           E     +RE A   A L+      ++      + + E    ++A+ E    E+A     E
Sbjct: 666 EEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEE 725

Query: 610 ARERAERAAAEARERANAEARE 631
            RE+ ++  A  +ERA ++  E
Sbjct: 726 LREKVKKYKALLKERALSKVGE 747

Length = 880

>gnl|CDD|226127 COG3599, DivIVA, Cell division initiation protein [Cell division and chromosome partitioning]

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 34/165 (20%), Positives = 59/165 (35%), Gaps = 11/165 (6%)

Query: 516 LEREREREREEKEREKKRIEK-EKERAREIEKEREKARQAVERATREARERAAAEARLKA 574
           +  + E+  +E E  +  I++ ++E     + E  +A Q  E    E ++ A AEA    
Sbjct: 35  VIDDYEQLLDENEDLEDEIDELKEELKEAADAEDSQAIQQAETEAEELKQAAEAEADDIL 94

Query: 575 ERAA------VDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAE 628
           +RA+        KA   A    E A + +   + + +A  E R+R           A  E
Sbjct: 95  KRASAQAQRVFGKAQYKADRYLEDAKIAQELEDLKRQAQVE-RQRLRSDIEAQLASAKQE 153

Query: 629 AREKEARERASVARTEAEALQRAERAA---VQRAASEARERAAAE 670
             ++  R          E  +R   AA     R   E       +
Sbjct: 154 DWDEILRSTVDEVEAANEEAERLADAAQADADRLRDECDIYVDTK 198

Length = 212

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 45.0 bits (107), Expect = 2e-04
 Identities = 39/126 (30%), Positives = 51/126 (40%), Gaps = 3/126 (2%)

Query: 566 AAAEARLKA--ERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARE 623
           A A++ L A    AA   A A     A  AAV R  A A E A     E A+R  A+  +
Sbjct: 42  ALADSDLAALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLV-EHAKRLTAQREQ 100

Query: 624 RANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQ 683
                A       +A  A  E  A + A R   + AA+  R R  A+A    A A +A  
Sbjct: 101 LVARAAAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKARI 160

Query: 684 NQQKND 689
            +  ND
Sbjct: 161 ERIVND 166

Length = 484

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 45.3 bits (108), Expect = 2e-04
 Identities = 42/208 (20%), Positives = 69/208 (33%), Gaps = 20/208 (9%)

Query: 444 AAASAAAMKEAMDRAEAKFRHAKE-MRERESFKAARSRESVQPDR------EERATQQDA 496
           A      +   + R+EA    A+E +R     +     E +Q  R      E+R  QQ  
Sbjct: 478 AYQLVRKIAGEVSRSEAW-DVARELLRRLREQRHLA--EQLQQLRMRLSELEQRLRQQQR 534

Query: 497 QERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAR--EIEKEREKARQA 554
            ERL  E  +R         E E+ +E  E   E       + R R   + ++ E+ +  
Sbjct: 535 AERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQAR 594

Query: 555 VERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERA 614
           ++R    A    AA+  L   R           E ++       Q   RER     R+  
Sbjct: 595 IQRLAARAPAWLAAQDALARLREQS----GEEFEDSQDVTEYMQQLLERERELTVERDE- 649

Query: 615 ERAAAEARERANAEAREKEARERASVAR 642
               A  ++  + E         +   R
Sbjct: 650 ---LAARKQALDEEIERLSQPGGSEDPR 674

Length = 1486

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 43.7 bits (104), Expect = 3e-04
 Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 17/134 (12%)

Query: 444 AAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDRE 503
                   +EA  R   K    +E++        R+RE    ++EER  ++ A+E  +RE
Sbjct: 215 RKERQKEKEEAEKRRRQK----QELQ--------RAREEQIEEKEERLQEERAEEEAERE 262

Query: 504 MQQREKGEEQRRLEREREREREEKEREKKR-IEK---EKERAREIEKEREKARQAVERAT 559
               EK  E   LE+E   +R  K  E +R +E+   EKE  R  E+E E       R  
Sbjct: 263 R-MLEKQAEDEELEQENAEKRRMKRLEHRRELEQQIEEKEERRAAEREEELEEGERLREE 321

Query: 560 REARERAAAEARLK 573
              R+    E R +
Sbjct: 322 EAERQARIEEERQR 335

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 44.4 bits (105), Expect = 3e-04
 Identities = 52/262 (19%), Positives = 89/262 (33%), Gaps = 12/262 (4%)

Query: 415 LEDFAMSRSWNNVNEYGEVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRER--- 471
           LE    S ++ +  E     +  +   + AA +  A++EA  R E + R   E   R   
Sbjct: 320 LEALQGSPAYQDAEELERARADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDD 379

Query: 472 --ESFKAAR---SRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREE 526
                +AAR   +R + +       T +       +E+Q+    + +R+       +R E
Sbjct: 380 AERELRAAREQLARAAERAGLSPAHTAEPDAALAAQELQELGALDARRQDADRVIAQRSE 439

Query: 527 KEREKKRIEKEKERAREIEKEREKARQ--AVERATREARERAAAEA-RLKAERAAVDKAN 583
           +    +R +   +RA          R     E     AR   A EA   +  R A   A 
Sbjct: 440 QVALLRRRDDVADRAEATHAAARARRDELDEEAEQAAARAELADEAVHREGARLAWVDAW 499

Query: 584 AAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVART 643
            A        AV        +  + +A  + E     A   A     ++  RERA++ R 
Sbjct: 500 QAQLRELTILAVDDQPGALADLDSWDALLQGEAPVRVAVYSAVQPLADELTRERAAL-RL 558

Query: 644 EAEALQRAERAAVQRAASEARE 665
             E L+    A         + 
Sbjct: 559 AEEVLEEERDALRTERERLEQG 580

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

 Score = 43.6 bits (103), Expect = 3e-04
 Identities = 34/122 (27%), Positives = 46/122 (37%), Gaps = 26/122 (21%)

Query: 564 ERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARE 623
            +AA E ++ A             ER +RA +  A+    E  AA  R   E  AA    
Sbjct: 175 VQAAMEKQMAA-------------ERDKRAEILEAEG---EAQAAILRAEGEAEAAIILA 218

Query: 624 RANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQ 683
            A AEA          +AR EA+A +    AA  R A  A +  A    E     A A  
Sbjct: 219 EAEAEAEV--------IARAEADAAKII--AAALREAPAAPQALAQRYLEELLEIALAGN 268

Query: 684 NQ 685
           ++
Sbjct: 269 SK 270

Length = 291

>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 505 QQREKGEEQRRLERE-REREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREAR 563
           + + + ++ RR +RE  E EREE+++ +++ E E++   E+E+EREK ++  ER  RE +
Sbjct: 8   RAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQ 67

Query: 564 ERAAAEARLK 573
            R   E   K
Sbjct: 68  ARKEQEEYEK 77

This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189

>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family

 Score = 44.2 bits (105), Expect = 3e-04
 Identities = 40/203 (19%), Positives = 70/203 (34%), Gaps = 21/203 (10%)

Query: 487 REERATQQDAQERLDREMQQREKGE---EQRRLEREREREREEKEREKKRIEKEKERARE 543
             +    +    RL  E   +   E   +    E     E  + ++      K   RA+ 
Sbjct: 87  ESQVLRLEAEVARLRAEADSQAAIEFPDDLLSAEDPAVPELIKGQQSLFESRKSTLRAQL 146

Query: 544 IEKEREKARQAVERATREARERAAAEA-RLKAERAAVDKANAAARERAERAAVQRAQAEA 602
                +  +   E A  +A+ +A  +   + +E         A R+  E+  V R +   
Sbjct: 147 ELILAQIKQLEAELAGLQAQLQALRQQLEVISEELE------ARRKLKEKGLVSRLELLE 200

Query: 603 RERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASE 662
            ER  AEA+           E    EA  +  + +    + E + +++  R  V    +E
Sbjct: 201 LERERAEAQ----------GELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTE 250

Query: 663 ARERAAAEARERAAAAARANQNQ 685
           A+ R  AE RER   A    Q  
Sbjct: 251 AQAR-LAELRERLNKARDRLQRL 272

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 423

>gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family

 Score = 44.5 bits (106), Expect = 3e-04
 Identities = 39/143 (27%), Positives = 47/143 (32%), Gaps = 22/143 (15%)

Query: 565 RAAAE--ARLKAERAAVDKA-----NAAAR---------ERAERAAVQRAQAEAR----E 604
            AA E   R    R   DKA      A AR            E    + A  E      E
Sbjct: 380 VAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALE 439

Query: 605 RAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQ--RAERAAVQRAASE 662
           R AA   +  ER A    E A  EA       R    +   EA+   RAE  A   A ++
Sbjct: 440 REAALGADHDERLAELRAELAALEAELAALEARWQQEKELVEAILALRAELEADADAPAD 499

Query: 663 ARERAAAEARERAAAAARANQNQ 685
                 A+  E  AA A A   +
Sbjct: 500 DDAALRAQLAELEAALASAQGEE 522

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 852

>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 40/185 (21%), Positives = 68/185 (36%), Gaps = 12/185 (6%)

Query: 451 MKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKG 510
            +      E +    +E   R   +     E+     E+   +++  + L  E +  E  
Sbjct: 3   AEREQQELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLL--EKKADELE 60

Query: 511 EEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEA 570
           EE RRLE E     EE+ER +  ++         E   E A+   ER  +EA E    + 
Sbjct: 61  EENRRLEEEAAASEEERERLEAEVD---------EATAEVAKLEEEREKKEA-ETRQLQQ 110

Query: 571 RLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAR 630
            L+  + A ++A     E A         A        E  +  E A+A+     + + R
Sbjct: 111 ELREAQEAHERARQELLEAAAAPTAPPHVAAPVNGEQLEPDDNGEEASADLETDPDMKDR 170

Query: 631 EKEAR 635
            +E R
Sbjct: 171 SEEER 175

This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins. Length = 244

>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827)

 Score = 44.2 bits (104), Expect = 3e-04
 Identities = 56/282 (19%), Positives = 97/282 (34%), Gaps = 15/282 (5%)

Query: 428 NEYGEVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDR 487
            EY  +    D     A  +  A K    + E   +    M+E      A   E+ +   
Sbjct: 135 QEYDALVEERDAALKRAEEAICASKVNEKKVEELTKEIIAMKESLERAHAAHLEAEEERI 194

Query: 488 EERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIE------KEKERA 541
                +   +E  ++E+++ EK  E+ + + + E++ E+       +E            
Sbjct: 195 GAALEKDQDRETYEKELKEAEKELERLKQDLDPEKDLEKLAEASAELESLQKEISIMASV 254

Query: 542 REIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAE 601
             + KE E+A+  +E+A  E +        LK E     K     RE+   A    +  E
Sbjct: 255 ASVLKELEEAKANLEKAAEEEKSLRNLVESLKQELEEEKKELEELREKEGEAEEAASSLE 314

Query: 602 ARERAAAEARERAERAAAE---------ARERANAEAREKEARERASVARTEAEALQRAE 652
           A        +E   R             + E   A    + ARE     + EAE  + A 
Sbjct: 315 AELNRTKSEKESKAREKMVEIPLKLQQASSEAEEARKEAEAAREELRKLKEEAEQTKAAL 374

Query: 653 RAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLES 694
             A  R  +  +E  AA+A E  A A      + +     +S
Sbjct: 375 ETAELRLEAALKEAEAAKAAEALALAEIKALQESEESAKADS 416

This family consists of several plant proteins of unknown function. Several sequences in this family are described as being "myosin heavy chain-like". Length = 484

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.9 bits (104), Expect = 4e-04
 Identities = 42/194 (21%), Positives = 72/194 (37%), Gaps = 16/194 (8%)

Query: 451  MKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKG 510
            +++ ++  E +    +E       K     E ++   +E    ++  E L+ E ++ E  
Sbjct: 826  LEQEIEELEEEIEELEE-------KLDELEEELEELEKELEELKEELEELEAEKEELEDE 878

Query: 511  EEQRRLERER-EREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAE 569
             ++   E+E  E E  E E E   +++E E+ RE  +E E   + +E    E  E    E
Sbjct: 879  LKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEE 938

Query: 570  ARLKAERAAVDKANAAARERAERAAV------QRAQAEARERAAAEARERAERAAAEARE 623
                 E     +      E      V      +  + E R       RE  E A  +  E
Sbjct: 939  YEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLE 998

Query: 624  RANAEAREKEARER 637
                E  +KE RER
Sbjct: 999  V--IEELDKEKRER 1010

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.3 bits (105), Expect = 4e-04
 Identities = 39/212 (18%), Positives = 77/212 (36%), Gaps = 6/212 (2%)

Query: 471 RESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKERE 530
            E  +  R RE ++  + E ++ Q    R++  +   E  +E     R+     +E E+ 
Sbjct: 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLD--ELSQELSDASRKIGEIEKEIEQL 728

Query: 531 KKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAA--ARE 588
           ++  EK KER  E+E++     Q +E    E +E  A    L+ +   +++A     AR 
Sbjct: 729 EQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL 788

Query: 589 RAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEAL 648
              R    +A+    E   +    R      +       +   ++  +     R + +  
Sbjct: 789 SHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKE- 847

Query: 649 QRAERAAVQRAASEARERAAAEARERAAAAAR 680
           Q       +      ++    E  E   AA R
Sbjct: 848 QIKSIEK-EIENLNGKKEELEEELEELEAALR 878

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 43.9 bits (104), Expect = 4e-04
 Identities = 40/192 (20%), Positives = 71/192 (36%), Gaps = 21/192 (10%)

Query: 505 QQREKGEEQRRLERERERE---REEKEREKKRIEKEKERAREIEKEREKARQAVERATRE 561
             + + + +R+ +R + R+   R+  ER   R  + +   RE  +E  + R+  ++ T E
Sbjct: 593 APKAEAKPERQQDRRKPRQNNRRDRNERRDTRDNRTRREGRENREENRRNRRQAQQQTAE 652

Query: 562 ARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEA 621
            RE   AE                 + R +    Q  + E + R   E R+  + A A  
Sbjct: 653 TRESQQAEV--------------TEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALN 698

Query: 622 RERANAEAREKEARERASVARTEAEALQRAER----AAVQRAASEARERAAAEARERAAA 677
            E  + +  E+E R +    R +   L +  R     A +  A    E  AAE   +   
Sbjct: 699 VEEQSVQETEQEERVQQVQPRRKQRQLNQKVRIEQSVAEEAVAPVVEETVAAEPVVQEVP 758

Query: 678 AARANQNQQKND 689
           A R    +    
Sbjct: 759 APRTELVKVPLP 770

Length = 1068

>gnl|CDD|237110 PRK12472, PRK12472, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 4e-04
 Identities = 46/156 (29%), Positives = 66/156 (42%), Gaps = 10/156 (6%)

Query: 485 PDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREI 544
           P  E  A      E L RE       E+  R   E +       RE   +   K   R++
Sbjct: 180 PKAEALAAAPARAETLARE------AEDAARAADEAKTAAAAAAREAAPL---KASLRKL 230

Query: 545 EKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARE 604
           E+ + +A   ++RA +        EA+ +AE     KA   A E A +    +A AEA+ 
Sbjct: 231 ERAKARADAELKRADKALAAAKTDEAKARAE-ERQQKAAQQAAEAATQLDTAKADAEAKR 289

Query: 605 RAAAEARERAERAAAEARERANAEAREKEARERASV 640
            AAA  +E A+ AAA+  E A A    K A E  S+
Sbjct: 290 AAAAATKEAAKAAAAKKAETAKAATDAKLALEPVSI 325

Length = 508

>gnl|CDD|237110 PRK12472, PRK12472, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 4e-04
 Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 9/130 (6%)

Query: 533 RIEKEKERAREIEKEREKARQAVERATREA-------RERAAAEARLKAERAAVDKANAA 585
           R E     A +  +  ++A+ A   A REA       R+   A+AR  AE    DKA AA
Sbjct: 191 RAETLAREAEDAARAADEAKTAAAAAAREAAPLKASLRKLERAKARADAELKRADKALAA 250

Query: 586 ARERAERAAVQRAQAEARERAA-AEARERAERAAAEARERANAEAREKEARERASVARTE 644
           A+    +A  +  Q +A ++AA A  +    +A AEA+  A A  +E  A+  A+     
Sbjct: 251 AKTDEAKARAEERQQKAAQQAAEAATQLDTAKADAEAKRAAAAATKE-AAKAAAAKKAET 309

Query: 645 AEALQRAERA 654
           A+A   A+ A
Sbjct: 310 AKAATDAKLA 319

Length = 508

>gnl|CDD|237110 PRK12472, PRK12472, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 4e-04
 Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 8/130 (6%)

Query: 540 RAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERA-----A 594
           RA  + +E E A +A + A   A   A   A LKA    +++A A A    +RA     A
Sbjct: 191 RAETLAREAEDAARAADEAKTAAAAAAREAAPLKASLRKLERAKARADAELKRADKALAA 250

Query: 595 VQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERA 654
            +  +A+AR   A E +++A + AAEA  + +    + EA+  A+ A  EA     A++A
Sbjct: 251 AKTDEAKAR---AEERQQKAAQQAAEAATQLDTAKADAEAKRAAAAATKEAAKAAAAKKA 307

Query: 655 AVQRAASEAR 664
              +AA++A+
Sbjct: 308 ETAKAATDAK 317

Length = 508

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 44.2 bits (105), Expect = 4e-04
 Identities = 38/153 (24%), Positives = 60/153 (39%), Gaps = 12/153 (7%)

Query: 533 RIEKEK----ERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARE 588
           R   E+    E A E+ +E   +R+ +        E A   A L    + +++   AA +
Sbjct: 276 RHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASD 335

Query: 589 RAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEAL 648
                     Q E  ER  A+  E  ER   E +     EA E++    A     E E  
Sbjct: 336 HLNLVQTALRQQEKIERYQADLEELEERL--EEQNEVVEEADEQQEENEARAEAAEEEVD 393

Query: 649 Q-RAERAAVQRAASEARERA-----AAEARERA 675
           + +++ A  Q+A    + RA     A +A ERA
Sbjct: 394 ELKSQLADYQQALDVQQTRAIQYQQAVQALERA 426

Length = 1486

>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 475 KAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRI 534
           K     E  Q  R++R  ++  +ER +R+  + ++  E++  E   E   ++KE E+++ 
Sbjct: 6   KKRAKLEEKQARRQQREAEE--EEREERKKLEEKREGERKEEEELEEEREKKKEEEERKE 63

Query: 535 EKEKERAREIEKEREKARQAVE 556
            +E+ R  + E E+ K+   VE
Sbjct: 64  REEQARKEQEEYEKLKSSFVVE 85

This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189

>gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional

 Score = 43.5 bits (103), Expect = 4e-04
 Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 57/195 (29%)

Query: 492 TQQDAQER-----LDREMQQRE--------KGEEQRRLER-----------------ERE 521
            QQ AQER     LD   +Q E         GEE +R ER                 E +
Sbjct: 117 QQQAAQERLLAAQLDAAFRQGEHTGLQLILSGEESQRGERILAYFGYLNQARQETIAELK 176

Query: 522 REREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARER--AAAEARLKAERAAV 579
           + REE   +K  +E+++ + + +  E++  +Q +E+A R  R++     E+ L+ ++  +
Sbjct: 177 QTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQA-RNERKKTLTGLESSLQKDQQQL 235

Query: 580 DKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEAR---- 635
               +  R    R     A+AE       EA+ RAER   EARE A    ++K+A+    
Sbjct: 236 ----SELRANESRLRDSIARAER------EAKARAER---EAREAARVRDKQKQAKRKGS 282

Query: 636 -------ERASVART 643
                  ER+ ++RT
Sbjct: 283 TYKPTESERSLMSRT 297

Length = 428

>gnl|CDD|224455 COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]

 Score = 43.6 bits (103), Expect = 4e-04
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 2/103 (1%)

Query: 560 REARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERA-- 617
           R      AAEA  KA RA ++ A  +       A      A+ +   A E    AE    
Sbjct: 126 RVRANVRAAEAAAKAARAQLEAARLSLAAEVATAYFDLLAAQEQLALAEETLAAAEEQLE 185

Query: 618 AAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAA 660
            AE R  A    R    +  A +A   A+      + A  R A
Sbjct: 186 LAEKRYDAGLATRLDVLQAEAQLASARAQLAAAQAQLAQARNA 228

Length = 457

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 43.5 bits (102), Expect = 4e-04
 Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 15/151 (9%)

Query: 474 FKAARSRESVQ---PDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKERE 530
           F + R+ E +    PD  E   ++   E  +RE + + K ++  RL+R  +  ++   R 
Sbjct: 173 FDSWRTFEPLDEDYPDDMEERDRKRYSEAKNREKRAKLKNQDNARLKRLVQIAKKRDPRI 232

Query: 531 KKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERA 590
           K              KE+EK  + + +  REA  R  A A LK +  A +KA   A   A
Sbjct: 233 K------------SFKEQEKEMKKIRKWEREAGARLKALAALKGKAEAKNKAEIEAEALA 280

Query: 591 ERAAVQRAQAEARERAAAEARERAERAAAEA 621
              AV++   E  ++A    ++  + AA +A
Sbjct: 281 SATAVKKKAKEVMKKALKMEKKAIKNAAKDA 311

Length = 379

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 2/90 (2%)

Query: 475 KAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRI 534
           +  R R     ++      +     L+ E+Q  +  E    LE E     EE E+ +K I
Sbjct: 69  QEIRERIKRAEEKLSAVKDERELRALNIEIQIAK--ERINSLEDELAELMEEIEKLEKEI 126

Query: 535 EKEKERAREIEKEREKARQAVERATREARE 564
           E  KER   +EK   +A   +E    E RE
Sbjct: 127 EDLKERLERLEKNLAEAEARLEEEVAEIRE 156

Length = 239

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.5 bits (103), Expect = 5e-04
 Identities = 43/210 (20%), Positives = 76/210 (36%), Gaps = 30/210 (14%)

Query: 497 QERLDREMQQREKGEEQRRLEREREREREEKERE-KKRIEKEKERAREIEKEREKARQAV 555
           +E++     +    E     +     + EE+  + +  I+K      E+E+E E+ R+  
Sbjct: 293 KEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRR 352

Query: 556 ERATREARERAAAEARLKAERAAVDKANAAARERA------------ERAAVQRAQAEAR 603
           ++ T E  E       L+AE   VDK  A  R+              E   ++R     +
Sbjct: 353 DKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQ 412

Query: 604 ERA--AAEARERAERAAAEARERANA-EAREKEARERASVARTEAEALQ----------- 649
           E     +E       A A    + N  E  +++          + E L            
Sbjct: 413 EELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELY 472

Query: 650 --RAERAAVQRAASEA-RERAAAEARERAA 676
             + E   V++  S+  RE A AEA+ RA+
Sbjct: 473 DLKEEYDRVEKELSKLQRELAEAEAQARAS 502

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 43.2 bits (102), Expect = 5e-04
 Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 5/154 (3%)

Query: 521 EREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVD 580
           E  +EE E+E K  +K +E    +E+  EK  + +        E +        +    +
Sbjct: 197 ELLQEEYEKEVKAEKKRQE----LERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEE 252

Query: 581 KANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASV 640
             + +A E  E       +    +R     R + E+   E    A  E + K+   + + 
Sbjct: 253 SDDESAWEGFESEYEPINKPVRPKRKTKAQRNK-EKRRKELEREAKEEKQLKKKLAQLAR 311

Query: 641 ARTEAEALQRAERAAVQRAASEARERAAAEARER 674
            +  A+ + + E+A  ++           + + R
Sbjct: 312 LKEIAKEVAQKEKARARKKEQRKERGEKKKLKRR 345

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family

 Score = 43.1 bits (102), Expect = 5e-04
 Identities = 48/207 (23%), Positives = 77/207 (37%), Gaps = 34/207 (16%)

Query: 453 EAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQ-ERLDREMQQREKGE 511
           EA  +A  +F    ++   E        +  Q   E R +   AQ E +  +++Q E   
Sbjct: 103 EADSQAAIEF--PDDLLSAEDPAVPELIKGQQSLFESRKSTLRAQLELILAQIKQLEA-- 158

Query: 512 EQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEAR 571
                E    + + +  R++  +  E+  AR   KE+      V R      ER  AEA+
Sbjct: 159 -----ELAGLQAQLQALRQQLEVISEELEARRKLKEK----GLVSRLELLELERERAEAQ 209

Query: 572 LKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERAN-AEAR 630
                          R  AE   ++R   E +       ++  +    E  E    A+AR
Sbjct: 210 -----------GELGRLEAELEVLKRQIDELQLE----RQQIEQTFREEVLEELTEAQAR 254

Query: 631 EKEARERASVARTEAEALQRAE-RAAV 656
             E RER + AR   + LQR   R+ V
Sbjct: 255 LAELRERLNKAR---DRLQRLIIRSPV 278

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 423

>gnl|CDD|147845 pfam05914, RIB43A, RIB43A

 Score = 43.1 bits (102), Expect = 5e-04
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 4/89 (4%)

Query: 489 ERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKER 548
             A ++  Q+   RE  +++  E Q+    E++ +      ++ R+E +  RA+E+    
Sbjct: 148 NEADRKKMQQEQQREWLEQQVQERQQAKAAEKQADTLH---DQLRVELDH-RAQELASLE 203

Query: 549 EKARQAVERATREARERAAAEARLKAERA 577
           E+ R+AVE+AT +  +  A E R +  R 
Sbjct: 204 EECRRAVEQATADFNKALAEEQRERERRE 232

This family consists of several RIB43A-like eukaryotic proteins. Ciliary and flagellar microtubules contain a specialised set of protofilaments, termed ribbons, that are composed of tubulin and several associated proteins. RIB43A was first characterized in the unicellular biflagellate, Chlamydomonas reinhardtii although highly related sequences are present in several higher eukaryotes including humans. The function of this protein is unknown although the structure of RIB43A and its association with the specialised protofilament ribbons and with basal bodies is relevant to the proposed role of ribbons in forming and stabilising doublet and triplet microtubules and in organising their three-dimensional structure. Human RIB43A homologues could represent a structural requirement in centriole replication in dividing cells. Length = 379

>gnl|CDD|227606 COG5281, COG5281, Phage-related minor tail protein [Function unknown]

 Score = 43.5 bits (102), Expect = 5e-04
 Identities = 59/327 (18%), Positives = 109/327 (33%), Gaps = 8/327 (2%)

Query: 373 ETGNARKKANEYSSFSNSPQCTHSPKSTRAGTRSSAASQIDELEDFAMSRSWNNVNEYGE 432
           +  N  K  N    +  + Q        RAG  ++AA+   E       R+       G 
Sbjct: 266 DPVNGAKALNRQFHYLTAAQLEQIAALQRAGDTAAAAAAAAEAAAAMDDRTARVKENMGT 325

Query: 433 VPSPEDVESSIAAASAAAMKEAM-DRAEAKFRHAKEMRERESFKAARSRESVQPDREERA 491
           + +  D  +  A     A+     +  +A    AK   E+ +   A+        R + A
Sbjct: 326 LETAWDALADAAKKMWDAVLGIGREDKQAALLAAKLAAEKLARVTAQGA---LNARLKLA 382

Query: 492 TQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEK---ERAREIEKER 548
                Q  L+     +   +E     RE E E    + E++ I K        R   +E 
Sbjct: 383 QDDLTQAELNYAAADQAANQEGALNAREDEAEVLSTQEERRDILKNLLADAEKRTARQEE 442

Query: 549 EKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAA 608
                A  +  +  +   A +  +    A      AAA    E+         A ++  A
Sbjct: 443 LNKALAKAKILQADKAAKAYQEDILQREAQSRGKTAAAERSQEQMTAALKALLAFQQQIA 502

Query: 609 EARERAERAAAEARERANAEAREKEARERASV-ARTEAEALQRAERAAVQRAASEARERA 667
           +     E+A+ +      AE +    +E A      E +AL   ++  ++  +  A    
Sbjct: 503 DLSGAKEKASDQKSLLWKAEEQYALLKEEAKQRQLQEQKALLEHKKETLEYTSQLAELLD 562

Query: 668 AAEARERAAAAARANQNQQKNDNDLES 694
               R   +A A  +Q ++ +D   E+
Sbjct: 563 QQADRFELSAQAAGSQKERGSDLYREA 589

Length = 833

>gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family

 Score = 43.4 bits (103), Expect = 6e-04
 Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 8/107 (7%)

Query: 551 ARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAV---QRAQAEARERAA 607
           ++ A   A  + R R AA   L+ E  A+++  A   +  ER A    + A  EA E AA
Sbjct: 413 SQNATPAALEDLRRRIAA---LELELDALEREAALGADHDERLAELRAELAALEA-ELAA 468

Query: 608 AEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERA 654
            EAR + E+   EA     AE            A   A+ L   E A
Sbjct: 469 LEARWQQEKELVEAILALRAELEADADAPADDDAALRAQ-LAELEAA 514

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 852

>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone

 Score = 43.5 bits (102), Expect = 6e-04
 Identities = 52/267 (19%), Positives = 102/267 (38%), Gaps = 17/267 (6%)

Query: 446 ASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPD---REERATQQDAQERLDR 502
                +++ +D  + + +   EM + +   A    E  +     RE    Q   +  L++
Sbjct: 142 LRMERLQQTLDARDEEIKKLLEMLQSKGLSAKAEEEDSERLGRIREAEDQQSHLEVLLEQ 201

Query: 503 EMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREA 562
           + ++     E+   + + ER+  + E  +K I+++  + +E EK  EKA   + R     
Sbjct: 202 KEKEHMMLREEIHQKLQMERDDAKTEASQKLIDEKDTKIKEFEKMLEKAENEIYRLQSRC 261

Query: 563 RERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEAR 622
               A   RL  E  A   A AA + + +RAA + ++ +          E      ++ R
Sbjct: 262 DTSEADRNRLDKEVEAERSALAAMKAKCDRAAQELSRKKTELLGLQTELETLANQDSDMR 321

Query: 623 ERANAEAREKEARE-RASVARTEAEAL-QRAERAAVQRAASEARERAAAEARERAAA--- 677
           +  +    +    E   ++ +TE +AL    ER         A  +AA E +   A    
Sbjct: 322 QHLDKLKEDLTRAEQEKAILQTEVDALRYELERKHNTLTKKTASLQAAQEEKATYAGEIE 381

Query: 678 ---------AARANQNQQKNDNDLESF 695
                      +    Q+K +N  E+F
Sbjct: 382 DMRDRYEKTERKLRVLQKKIENLQETF 408

This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains. Length = 774

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.4 bits (103), Expect = 6e-04
 Identities = 32/135 (23%), Positives = 38/135 (28%), Gaps = 2/135 (1%)

Query: 547 EREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERA 606
           ER + R  V          AAA +   A  AA     AAA   A   A   A   A   A
Sbjct: 379 ERLERRLGVAGGAGAPA--AAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPA 436

Query: 607 AAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARER 666
            A A       A      +   A    A+   + A         A       A + A   
Sbjct: 437 PAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAA 496

Query: 667 AAAEARERAAAAARA 681
            AA A    A  A  
Sbjct: 497 PAAPAAPAGADDAAT 511

Length = 824

>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed

 Score = 43.0 bits (101), Expect = 6e-04
 Identities = 25/137 (18%), Positives = 39/137 (28%), Gaps = 3/137 (2%)

Query: 547 EREKARQAVERATREARERAAAEARLKAERAAVDKANAAAR-ERAERAAVQRAQAEARER 605
           E  +     E    E  E     A     + A     +    E    A ++R Q      
Sbjct: 322 EPNQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAVEETSEADIEREQPGDLAG 381

Query: 606 AAAEARERAERAAAEARERANAEAREKEARERASVARTEA--EALQRAERAAVQRAASEA 663
            A  A +    AA+ A E   A A E        V    A      + +  AV     + 
Sbjct: 382 QAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDELAVAGPGDDP 441

Query: 664 RERAAAEARERAAAAAR 680
            E      ++  ++  R
Sbjct: 442 AEPDGIRRQDDFSSRRR 458

Length = 460

>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 19/76 (25%), Positives = 42/76 (55%), Gaps = 4/76 (5%)

Query: 488 EERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEK----ERARE 543
           E +    + Q ++++  + RE+ EE+  L  E ++  +E ++ K  +EK +    ER  +
Sbjct: 80  ELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLKAELEKYEKNDPERIEK 139

Query: 544 IEKEREKARQAVERAT 559
           +++E + A++A  R T
Sbjct: 140 LKEETKVAKEAANRWT 155

This family of proteins includes MND1 from S. cerevisiae. The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair. Length = 188

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 42.6 bits (101), Expect = 8e-04
 Identities = 29/99 (29%), Positives = 32/99 (32%), Gaps = 8/99 (8%)

Query: 548 REKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAA 607
            E A   VE A R   +R    AR          A AA   +A  A  +RA AE   R  
Sbjct: 81  AEPAPWLVEHAKRLTAQREQLVAR--------AAAPAAPEAQAPAAPAERAAAENAARRL 132

Query: 608 AEARERAERAAAEARERANAEAREKEARERASVARTEAE 646
           A A   A R    A   A      K   ER        E
Sbjct: 133 ARAAAAAPRPRVPADAAAAVADAVKARIERIVNDTVMQE 171

Length = 484

>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

 Score = 43.2 bits (101), Expect = 8e-04
 Identities = 28/137 (20%), Positives = 61/137 (44%), Gaps = 7/137 (5%)

Query: 424  WNNVNEYGEVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFK----AARS 479
            W  +    E+     +  S A  + ++ +E    AE  +   +E+  +        A  S
Sbjct: 941  WRGLRRLHEIRESLGLTHSYAPQNDSSSEEMGYGAEEDYSLPREIESKLPLDKRSIAVVS 1000

Query: 480  RESVQPDREERATQQDAQERLDREM---QQREKGEEQRRLEREREREREEKEREKKRIEK 536
            R    P   E   + + ++R+ +E    Q+ ++  E  +  +E E  ++EKERE++  + 
Sbjct: 1001 RRIELPVPPECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKT 1060

Query: 537  EKERAREIEKEREKARQ 553
              +  +E+ K+R K ++
Sbjct: 1061 IHDNYKEMAKKRLKKKR 1077

Length = 1077

>gnl|CDD|222790 PHA00430, PHA00430, tail fiber protein

 Score = 42.6 bits (100), Expect = 8e-04
 Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 9/118 (7%)

Query: 546 KEREKARQAVERATREA----RERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAE 601
            E  ++R   +RA  +A     E  A+    K  R+  D +N+ A      A    +  E
Sbjct: 166 NEANRSRNEADRARNQAERFNNESGASATNTKQWRSEADGSNSEANRFKGYADSMTSSVE 225

Query: 602 ARERAAAEARERAERAAAEAR----ERANAEAREKEARERASVARTEAE-ALQRAERA 654
           A +  A  + + A  A   A       + A A E  A   A+ A T A  A Q+A+RA
Sbjct: 226 AAKGQAESSSKEANTAGDYATKAAASASAAHASEVNAANSATAAATSANRAKQQADRA 283

Length = 568

>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200)

 Score = 39.9 bits (94), Expect = 9e-04
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 505 QQREKGEEQRRLEREREREREEKERE-KKRIEKEKERAREIEKEREKARQAVERATREAR 563
            +RE+ E +  L ++RE E E+KE E ++ + K  +  +E E +R +A +  E   +  +
Sbjct: 18  AKREEFERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKRRRAEKKAEEEKKLRK 77

Query: 564 ERAAAEARLKAERAAVDKANAAARERAER 592
           E+      LKAE   +        E+ E 
Sbjct: 78  EKEEEIKELKAELEELKAEIEKLEEKLEE 106

This family is found in eukaryotes. It is a coiled-coil domain of unknwon function. Length = 126

>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production and conversion]

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 30/111 (27%), Positives = 42/111 (37%), Gaps = 8/111 (7%)

Query: 576 RAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERA-----NAEAR 630
           +        A  ER  + A   A+AE  +  A       E+   EARE+A      A+  
Sbjct: 25  KFVWKPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKE 84

Query: 631 EKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARA 681
            ++  E    A  E E  +  E A  +  A   +ERA  E R   A  A A
Sbjct: 85  AEQIAEEI-KAEAEEELERIKEAAEAEIEA--EKERALEELRAEVAELAVA 132

Length = 161

>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production and conversion]

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 9/114 (7%)

Query: 517 EREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARE-----RAAAEAR 571
             + E +    E E++  E  ++ +  IE+ +++A Q  E    EA E     + AAEA 
Sbjct: 51  RLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAE 110

Query: 572 LKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERA-ERAAAEARER 624
           ++AE+   ++A    R      AV  A+    ++    A++   +   AE  E 
Sbjct: 111 IEAEK---ERALEELRAEVAELAVAIAEKLLGKKVDEAAQKDLIDAFIAELGEN 161

Length = 161

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 41.9 bits (98), Expect = 0.001
 Identities = 39/175 (22%), Positives = 69/175 (39%), Gaps = 10/175 (5%)

Query: 519 EREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAA 578
           + +  R +    +  +   +   R  E ERE AR  +++A    +ER A    L A R  
Sbjct: 75  QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKA---RQEREAVRQELAAARQN 131

Query: 579 VDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERA 638
           + KA        ++A  Q  Q   +  A    +  A+  + +A ++    +  +   +  
Sbjct: 132 LAKAQQELARLTKQA--QDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVL 189

Query: 639 SVARTEAEALQRAERAAVQRAASEARE-----RAAAEARERAAAAARANQNQQKN 688
            +    A+  Q A+  A +  A++AR      RAAA  +   A   R  Q  QK 
Sbjct: 190 DLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKA 244

Length = 499

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 42.6 bits (100), Expect = 0.001
 Identities = 41/257 (15%), Positives = 97/257 (37%), Gaps = 7/257 (2%)

Query: 410 SQIDELEDFAMSRSWNNVNEYGEVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMR 469
            Q  E E+  +++      E  +    ++ E  + A     +K  + + E +    +E  
Sbjct: 258 KQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKL 317

Query: 470 ERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKER 529
           +    +  +  + ++ ++EE    +   + L+ + +  E+ EEQ    +E+  + EE+  
Sbjct: 318 KESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELL 377

Query: 530 EKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARER 589
            KK++E E+  +    KE E   +  E       E+ A      +E+           E 
Sbjct: 378 AKKKLESERLSSAAKLKEEELELKNEE-------EKEAKLLLELSEQEEDLLKEEKKEEL 430

Query: 590 AERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQ 649
                ++ +    + +   E  E  ++A    +++   +  E   +E   V   E   L 
Sbjct: 431 KIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSEDLLKETKLVKLLEQLELL 490

Query: 650 RAERAAVQRAASEARER 666
              +   + +  E++ R
Sbjct: 491 LLRQKLEEASQKESKAR 507

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 30/145 (20%), Positives = 59/145 (40%), Gaps = 15/145 (10%)

Query: 517 EREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERA---------- 566
           E+E + E++ +E E+   +K ++ A E  +  E +   +E +  +  E +          
Sbjct: 204 EKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDESAWEGFE 263

Query: 567 -AAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERA 625
              E   K  R          +E+  +   + A+ E + +       R +  A E  ++ 
Sbjct: 264 SEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKE 323

Query: 626 NAEAREKEARERASVARTEAEALQR 650
            A AR+KE R+     R E + L+R
Sbjct: 324 KARARKKEQRK----ERGEKKKLKR 344

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 3/76 (3%)

Query: 489 ERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKER 548
           +   ++ A+    +  +Q+ + EE+ R ER++    EEK   +++ E+E E  RE +KE 
Sbjct: 2   KIGAKKRAKLEEKQARRQQREAEEEEREERKK---LEEKREGERKEEEELEEEREKKKEE 58

Query: 549 EKARQAVERATREARE 564
           E+ ++  E+A +E  E
Sbjct: 59  EERKEREEQARKEQEE 74

This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189

>gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family

 Score = 42.2 bits (100), Expect = 0.001
 Identities = 31/108 (28%), Positives = 39/108 (36%), Gaps = 11/108 (10%)

Query: 511 EEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEA 570
           E+ RR     E E +  ERE        ER  E+  E                E AA EA
Sbjct: 422 EDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEA----------ELAALEA 471

Query: 571 RLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAA 618
           R + E+  V+    A R   E  A   A  +A  RA     E A  +A
Sbjct: 472 RWQQEKELVEAIL-ALRAELEADADAPADDDAALRAQLAELEAALASA 518

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 852

>gnl|CDD|222790 PHA00430, PHA00430, tail fiber protein

 Score = 42.6 bits (100), Expect = 0.001
 Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 6/131 (4%)

Query: 552 RQAVERATREARERAAAEARLKAERA--AVDKANAAARERAERAAVQRAQAEARERAAAE 609
             AV     +   ++A  AR +A R+    D+A   A      +       +     A  
Sbjct: 146 GDAVPLGQIKTWNQSAWNARNEANRSRNEADRARNQAERFNNESGASATNTKQWRSEADG 205

Query: 610 ARERAERAAAEARERANAEAREKEARERASVARTEA-EALQRAERAAVQRAASEARERAA 668
           +   A R    A    +  +  + A+ +A  +  EA  A   A +AA   +A+ A E  A
Sbjct: 206 SNSEANRFKGYA---DSMTSSVEAAKGQAESSSKEANTAGDYATKAAASASAAHASEVNA 262

Query: 669 AEARERAAAAA 679
           A +   AA +A
Sbjct: 263 ANSATAAATSA 273

Length = 568

>gnl|CDD|181646 PRK09098, PRK09098, type III secretion system protein HrpB; Validated

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 39/133 (29%), Positives = 54/133 (40%), Gaps = 7/133 (5%)

Query: 540 RAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQ 599
            A  +  +   A    ER    A  RA AE  +   RA  +    AAR  A+R+A +R  
Sbjct: 24  FATVLALDAALAAVHAERDAVLAAARARAERIVAEARAQAEAILEAARREADRSA-RRGY 82

Query: 600 AEARERAAAEARER-AERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQR 658
           A    +A AE   R A+ A AE R       R  E      VA    + +   +RAA+  
Sbjct: 83  AAGLRQALAEWHARGADHAFAERRAARRMRERLAEI-----VAAAVEQIVLGEDRAALFA 137

Query: 659 AASEARERAAAEA 671
            A++  ER    A
Sbjct: 138 RAAQTLERVVDGA 150

Length = 233

>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB

 Score = 42.6 bits (101), Expect = 0.001
 Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 16/134 (11%)

Query: 504 MQQREKGEEQRRLERER---EREREEKEREKKRIEKEKERAREIEKEREKARQAVERATR 560
           M+   K EE   L+R     E ERE  ++EK   E  KER  ++EKE  +          
Sbjct: 398 MEIDSKPEELDELDRRIIQLEIEREALKKEKD--EASKERLEDLEKELAELE-------- 447

Query: 561 EARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAE 620
              E A  E + KAE+AA+       +E  E+  ++  QAE     A  A  +  +    
Sbjct: 448 --EEYADLEEQWKAEKAAIQGI-QQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPEL 504

Query: 621 ARERANAEAREKEA 634
            +    AEA+  E 
Sbjct: 505 EKRLQAAEAKLGEE 518

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins [Protein fate, Protein folding and stabilization]. Length = 852

>gnl|CDD|218184 pfam04632, FUSC, Fusaric acid resistance protein family

 Score = 42.6 bits (101), Expect = 0.001
 Identities = 35/140 (25%), Positives = 39/140 (27%), Gaps = 14/140 (10%)

Query: 548 REKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEA-RERA 606
               R  +    R+A   AA    L     A      AARE   R A      EA R  A
Sbjct: 155 GPALRARLRAWLRDAARLAADA--LAGAGGA------AAREARLRLAADILALEALRSHA 206

Query: 607 AAEARE--RAERAAAEARER---ANAEAREKEARERASVARTEAEALQRAERAAVQRAAS 661
           A E+       RA      R     A          A  A   A AL           A+
Sbjct: 207 AFESPRGRARNRALRRLNARMLALLARLSALARLLAALRAAGAAAALAALLDELAAALAA 266

Query: 662 EARERAAAEARERAAAAARA 681
                A A  R R AA    
Sbjct: 267 AGLPAAVAALRARLAALRPE 286

This family includes a conserved region found in two proteins associated with fusaric acid resistance,from Burkholderia cepacia and Klebsiella oxytoca. These proteins are likely to be membrane transporter proteins. Length = 649

>gnl|CDD|217933 pfam04156, IncA, IncA protein

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 1/122 (0%)

Query: 469 RERESFKAARSRESVQPDREERATQQDAQERLDR-EMQQREKGEEQRRLEREREREREEK 527
              +S +  +  E      E +    + QE L+  E +  E   E   L+ + +  RE  
Sbjct: 64  APVQSVRPQKLEELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELL 123

Query: 528 EREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAAR 587
           +  ++R+E  +E  +E+ KE  + RQ +     E RE                +   +  
Sbjct: 124 KSLEERLESLEESIKELAKELRELRQDLREEVEELREELERLQENLQRLQEAIQELQSLL 183

Query: 588 ER 589
           E+
Sbjct: 184 EQ 185

Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is non-fusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA, is functionally associated with the homotypic fusion of inclusions. This family probably includes members of the wider Inc family rather than just IncA. Length = 186

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.2 bits (99), Expect = 0.001
 Identities = 48/180 (26%), Positives = 61/180 (33%), Gaps = 8/180 (4%)

Query: 558 ATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERA 617
           AT  A   A       A  AA     A A   A  AA   A A AR  AAA AR      
Sbjct: 375 ATAAAAPVAQPAPAAAAPAAAAP---APAAPPAAPAAAPAAAAAARAVAAAPARRSPAPE 431

Query: 618 AAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAA 677
           A  A  +A+A           + A   A A     R A       A   AAA AR   AA
Sbjct: 432 ALAAARQASARGPGGAPAPAPAPAAAPAAA----ARPAAAGPRPVAAAAAAAPARAAPAA 487

Query: 678 AARANQNQQKNDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPARRTSVGASS 737
           A     +      +L   F+  +       P    ++S+ D  +   P+ A  T   A +
Sbjct: 488 APAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPD-PATADPDDAFETLAPAPA 546

Length = 700

>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase

 Score = 42.2 bits (99), Expect = 0.001
 Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 7/62 (11%)

Query: 508 EKGEEQRRL---EREREREREEKER-EKKRIEKEKERA---REIEKEREKARQAVERATR 560
           EK  E  +L   E ERER+ EE+ R E+++   E +RA    E+EK REK +  +++A+R
Sbjct: 253 EKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREKLQNLLKKASR 312

Query: 561 EA 562
            A
Sbjct: 313 SA 314

Length = 1036

>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional

 Score = 42.2 bits (99), Expect = 0.001
 Identities = 27/62 (43%), Positives = 42/62 (67%), Gaps = 3/62 (4%)

Query: 516 LERERER-EREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKA 574
           L R RE+ ERE++ER K+R + + ER R+ ++E  K R+A+E A R  R   A EA++KA
Sbjct: 5   LRRAREKLEREQRER-KQRAKLKLERERKAKEEAAKQREAIEAAQRS-RRLDAIEAQIKA 62

Query: 575 ER 576
           ++
Sbjct: 63  DQ 64

Length = 567

>gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523)

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 46/219 (21%), Positives = 85/219 (38%), Gaps = 17/219 (7%)

Query: 434 PSPEDVESSIAAASAAAMKEAMDRAEAKF------RHAKEMRERESFKAARSRESVQPDR 487
           PSP                       + F      R AK +RE ES   A+  ++ +  +
Sbjct: 1   PSPPASAGGGDRKGKRTRNNGPATIASGFDPTALERGAKALRELESSPHAK--KAFELSK 58

Query: 488 EERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKE 547
            +  T+Q   E    ++++ E  + Q +LER R    E ++  +++ ++E++RA+    +
Sbjct: 59  MQEKTRQAELEA---KIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQ---YQ 112

Query: 548 REKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAA 607
            E AR+  +    E + R   E     E + + +   A R   E   ++  +    E A 
Sbjct: 113 DELARKRYQ-KELEQQRRQNEELLKMQEESVLRQE--AMRRATEEEILEMRRETIEEEAE 169

Query: 608 AEARERAERAAAEARERANAEAREKEARERASVARTEAE 646
            E      +  AEAR RA  E   ++        +   E
Sbjct: 170 LERENIRAKIEAEARGRAKEERENEDINREMLKLKANEE 208

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with pfam00004. This domain has a conserved LER sequence motif. Length = 276

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.0 bits (99), Expect = 0.002
 Identities = 43/176 (24%), Positives = 68/176 (38%), Gaps = 17/176 (9%)

Query: 534 IEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERA 593
           I K KER +E E++ E+ R+ ++R      E    E +LK+     +KA      +AE  
Sbjct: 167 ISKYKERRKETERKLERTRENLDRLEDILNEL---ERQLKSLERQAEKAERYKELKAELR 223

Query: 594 AVQRAQAEARERAAAEARERAERAAAEA---RERANAEAREKEAR-ERASVARTEAEALQ 649
            ++ A    R     E  E  +    EA    E   AE +E E + E   +  +E E   
Sbjct: 224 ELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEI 283

Query: 650 RAERAAVQRAASE----------ARERAAAEARERAAAAARANQNQQKNDNDLESF 695
              +  +   A+E           RER A   R+     A+  + + K D   E  
Sbjct: 284 EELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEEL 339

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.0 bits (99), Expect = 0.002
 Identities = 31/177 (17%), Positives = 55/177 (31%), Gaps = 1/177 (0%)

Query: 513 QRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARL 572
            R    E +R RE  E  K+ +   +   R IE   ++  Q +  A+R+  E      +L
Sbjct: 669 SRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQL 728

Query: 573 KAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREK 632
           + E   + K      E    +  Q  +    E    EAR           E A  +   +
Sbjct: 729 EQEEEKL-KERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEAR 787

Query: 633 EARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKND 689
            +  R    + E   L+        R     ++       +           +Q+ D
Sbjct: 788 LSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRID 844

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|205692 pfam13514, AAA_27, AAA domain

 Score = 42.1 bits (99), Expect = 0.002
 Identities = 39/202 (19%), Positives = 70/202 (34%), Gaps = 23/202 (11%)

Query: 497 QERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVE 556
           ++ L++E  +  K        R R+ E     +E K +E E    +   +  +   +A++
Sbjct: 132 RDELEKEADELWK-------PRGRKPEINVALKELKELEAEIREVQLKTRTWKDLVKALD 184

Query: 557 RATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAER 616
            A  E         +L+ E+  +++        AER A+++  A   E            
Sbjct: 185 EAEEELANLRKELRQLEKEKQRLERLRRLLPLLAERKALEQQLAALGEVIDLPPDAVERY 244

Query: 617 AAAEARERANAEAREKEARERASVARTEAEALQ---------------RAERAAVQRAAS 661
             A A  RA A    +   ER    + E + +                  +R   + A  
Sbjct: 245 EEARAELRA-ARRNLELLTERLEALQAELDEISLDEELLAQAAAIEALHQQRGEYRNAEQ 303

Query: 662 EARERAAAEARERAAAAARANQ 683
           +  +R    A  R AAAA   Q
Sbjct: 304 DLPDREGEIANAREAAAALLAQ 325

This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif. Length = 1118

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 41.7 bits (99), Expect = 0.002
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 604 ERAAAEARERAERAAAEARERANAEAREK--EARERASVARTEAEA--------LQRAER 653
           E    EA E A+R   EA++ A A  +E   EA+E     R E E         LQ+ E+
Sbjct: 30  EAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEK 89

Query: 654 AAVQRAASEARERAAAEARERAAAAARANQNQQKND 689
             +Q+  +  R+    E RE           Q++ +
Sbjct: 90  RLLQKEENLDRKLELLEKREEELEKKEKELEQKQQE 125

Length = 520

>gnl|CDD|235903 PRK06991, PRK06991, ferredoxin; Provisional

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 6/114 (5%)

Query: 522 REREEKEREKKRIEKEKERAREIEKEREKARQA-VERATREARERAAAEARLKAERAAVD 580
           R R +  + + R E+E   AR   +    A  A  E +   A     AEA+   +RA + 
Sbjct: 156 RARHDARQARLRREREAAEARAAARAAASAAAAAAEASAAAAPAADDAEAK---KRAIIA 212

Query: 581 KANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEA 634
            A   AR++ E  A Q A  +  E  +A    +A+  AAEAR +  AE R+   
Sbjct: 213 AALERARKKKEELAAQGAGPKNTEGVSAAV--QAQIDAAEARRKRLAEQRDAPD 264

Length = 270

>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated

 Score = 41.4 bits (97), Expect = 0.002
 Identities = 32/138 (23%), Positives = 50/138 (36%), Gaps = 6/138 (4%)

Query: 559 TREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQ--AEARERAAAEARER-AE 615
           T E +E  A +     E+    KA      R     +       E     A   + R AE
Sbjct: 280 TDEFKEHHAEQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTAE 339

Query: 616 RAAAEARERANAEAR---EKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEAR 672
           +  A+AR++  A+ R   E+E    A   R  A A  RA RAAV+       + +  E  
Sbjct: 340 KNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDASPNEDT 399

Query: 673 ERAAAAARANQNQQKNDN 690
                 ++ +  Q +   
Sbjct: 400 PSENEESKGSPPQVEATT 417

Length = 429

>gnl|CDD|180240 PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated

 Score = 39.8 bits (94), Expect = 0.002
 Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 26/111 (23%)

Query: 538 KERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQR 597
           +ER ++I      A +A        +E   A+A+ +A+        A AR  A       
Sbjct: 34  EERQKKIADGLAAAERA-------KKELELAQAKYEAQL-------AEARAEA-----AE 74

Query: 598 AQAEARERAA---AEARERAERAAAEARERANAE-AREKE-ARE--RASVA 641
              +A++RAA    EA+  AE  AA  + +A AE  +E++ ARE  R  VA
Sbjct: 75  IIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERKRAREELRKQVA 125

Length = 156

>gnl|CDD|180941 PRK07352, PRK07352, F0F1 ATP synthase subunit B; Validated

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 9/105 (8%)

Query: 516 LEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAA-----EA 570
           LE  RE   +  +  ++R+ +  +   E +++  +A+Q  ER   +A+ RA A     E 
Sbjct: 48  LEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIEK 107

Query: 571 RLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAE 615
           +   + A + K  AAA   AE+    R  A+ R  AA  A  +AE
Sbjct: 108 QAIEDMARL-KQTAAADLSAEQE---RVIAQLRREAAELAIAKAE 148

Length = 174

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 41.5 bits (98), Expect = 0.002
 Identities = 29/121 (23%), Positives = 36/121 (29%), Gaps = 5/121 (4%)

Query: 550 KARQAVERATREARERAAAEARLKAERAA-----VDKANAAARERAERAAVQRAQAEARE 604
            A  A   A        AA +R  A  A      V+ A     +R +  A   A A    
Sbjct: 54  PAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEA 113

Query: 605 RAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEAR 664
           +A A   ERA    A  R    A A  +      + A        R ER        E R
Sbjct: 114 QAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKARIERIVNDTVMQELR 173

Query: 665 E 665
            
Sbjct: 174 S 174

Length = 484

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 41.5 bits (98), Expect = 0.002
 Identities = 35/124 (28%), Positives = 40/124 (32%), Gaps = 15/124 (12%)

Query: 557 RATREARERAAAEARLKAERAAVDKANAAAR--ERAERAAVQRAQAEARERAAAEARERA 614
            A   A +   A A     R A   A  A    E A+R   QR Q  AR  A A    +A
Sbjct: 56  AAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQA 115

Query: 615 ERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARER 674
               A   ERA AE   +            A A   A R  V   A+ A   A     ER
Sbjct: 116 ---PAAPAERAAAENAARRL----------ARAAAAAPRPRVPADAAAAVADAVKARIER 162

Query: 675 AAAA 678
               
Sbjct: 163 IVND 166

Length = 484

>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 22/70 (31%), Positives = 42/70 (60%)

Query: 487 REERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEK 546
            ++RA  ++ Q R  +   + E+ EE+++LE +RE ER+E+E  ++  EK+KE     E+
Sbjct: 5   AKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKER 64

Query: 547 EREKARQAVE 556
           E +  ++  E
Sbjct: 65  EEQARKEQEE 74

This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189

>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 47/174 (27%), Positives = 68/174 (39%), Gaps = 20/174 (11%)

Query: 521 EREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVD 580
           E ERE++E E        ER  ++E++  +A++ +E     A E      + + E   ++
Sbjct: 2   EAEREQQELE--------ERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLE 53

Query: 581 -KANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERAS 639
            KA+    E         A  E RER  AE  E     A    ER   E +E E R+   
Sbjct: 54  KKADELEEENRRLEEEAAASEEERERLEAEVDEATAEVAKLEEER---EKKEAETRQ--- 107

Query: 640 VARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLE 693
             + E    Q A      RA  E  E AAA       AA    +  + +DN  E
Sbjct: 108 -LQQELREAQEAHE----RARQELLEAAAAPTAPPHVAAPVNGEQLEPDDNGEE 156

This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins. Length = 244

>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 13/182 (7%)

Query: 512 EQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEAR 571
           EQ+ LE   E+  E+  R +K +E+ +E A E+E++ ++  +  +   ++A E      R
Sbjct: 6   EQQELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENRR 65

Query: 572 LKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEARE 631
           L+ E      A A+  ER ER   +  +A A      E RE+ E   AE R+    +   
Sbjct: 66  LEEE------AAASEEER-ERLEAEVDEATAEVAKLEEEREKKE---AETRQ---LQQEL 112

Query: 632 KEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDND 691
           +EA+E    AR E      A  A    AA    E+   +     A+A        K+ ++
Sbjct: 113 REAQEAHERARQELLEAAAAPTAPPHVAAPVNGEQLEPDDNGEEASADLETDPDMKDRSE 172

Query: 692 LE 693
            E
Sbjct: 173 EE 174

This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins. Length = 244

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.5 bits (98), Expect = 0.002
 Identities = 35/142 (24%), Positives = 46/142 (32%), Gaps = 6/142 (4%)

Query: 570 ARLKAERAAVDKANAAAR-ERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAE 628
           AR+    A+ D+    AR ER ER       A A   AA  A   A  AAA A   A   
Sbjct: 360 ARMLLPSASDDERGLLARLERLERRLGVAGGAGAPAAAAPSAAA-AAPAAAPAPAAAAPA 418

Query: 629 AREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKN 688
           A    A   A  A  +         A    A +     A +     A +A  A       
Sbjct: 419 A----AAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAP 474

Query: 689 DNDLESFFSMSSRPSSAPRPRA 710
           +       +  + P+ A  P A
Sbjct: 475 EPTAAPAPAPPAAPAPAAAPAA 496

Length = 824

>gnl|CDD|223914 COG0845, AcrA, Membrane-fusion protein [Cell envelope biogenesis, outer membrane]

 Score = 41.6 bits (97), Expect = 0.002
 Identities = 29/142 (20%), Positives = 45/142 (31%), Gaps = 10/142 (7%)

Query: 553 QAVERATREARERAAAEARLKAERAAVDKANAAARER-----AERAAVQRAQAEARERAA 607
             ++ +         AEA+L   +A +  A     +R     AE+AAV +A+ +A +   
Sbjct: 95  ARLDPSAVLQAALDQAEAQLARAQALLAPAELGDLQREAKLAAEKAAVSQAELDAAQALL 154

Query: 608 AEARERAERAAAEARE-RANAEAREKEARERASVARTEAEALQRAER----AAVQRAASE 662
             A    E A A     + N E     A     +        Q        A +      
Sbjct: 155 RAAEALVEAAQAALASAKLNLEYTRITAPISGVIGARLVRVGQLVSAGQALATIADLDPA 214

Query: 663 ARERAAAEARERAAAAARANQN 684
           A     A   ER   A +  Q 
Sbjct: 215 AALWVLAAVLERDLLAVKVGQK 236

Length = 372

>gnl|CDD|148617 pfam07111, HCR, Alpha helical coiled-coil rod protein (HCR)

 Score = 42.0 bits (98), Expect = 0.002
 Identities = 62/232 (26%), Positives = 101/232 (43%), Gaps = 14/232 (6%)

Query: 512 EQRRLEREREREREEKEREKKRIEKEKERAREI-EKERE---KARQAVERATREARER-A 566
           E R+L  ER R   E +   + I++E  RARE  E+ER+   +  Q +ER  +E++E  A
Sbjct: 479 ELRQLREERNRLDAELQLSARLIQQEVGRAREQGEEERQRLAEVAQQLERELQESQESLA 538

Query: 567 AAEARLKAERAAV-DKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERA 625
           +A A+L+A RA   +    AA  R E    Q    +A +   AE   R     ++   R 
Sbjct: 539 SAGAQLEAARAGQQESTEEAASLRQELTQQQEVYGQALQEKVAEVETRLREQLSDTERRL 598

Query: 626 NAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQ 685
           N EAR + A+   S+ + + +A Q  ER       ++   R   EAR+           +
Sbjct: 599 N-EARREHAKAVVSLRQIQRQAAQEKER-------NQELRRLQEEARKEEGQRLSRRLQE 650

Query: 686 QKNDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPARRTSVGASS 737
            + D +L     +   PSS  +  +        S+S     P R +  G+ +
Sbjct: 651 LERDKNLMLQRLLRVLPSSVNKKPSPRPIESSSSESLPAAFPGRESQKGSLT 702

This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation. Length = 739

>gnl|CDD|240439 PTZ00491, PTZ00491, major vault protein; Provisional

 Score = 41.9 bits (99), Expect = 0.002
 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 554 AVERATR--EARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEAR 611
           A+E  T+  EA  R  AE   +  R  +++     + +AE    +  + +A E AA E+ 
Sbjct: 656 AIEITTKSQEAAARHQAELLEQEARGRLERQKMHDKAKAEEQRTKLLELQA-ESAAVESS 714

Query: 612 ERAERAAAEARERAN---AEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAA 668
            ++ RA A A   A    AEA  ++A  RA   R EAEA     R   +      + +  
Sbjct: 715 GQS-RAEALAEAEARLIEAEAEVEQAELRAKALRIEAEAELEKLRKRQELELEYEQAQNE 773

Query: 669 AE-ARERAAAAARANQNQQ 686
            E A+ +  A   A + ++
Sbjct: 774 LEIAKAKELADIEATKFER 792

Length = 850

>gnl|CDD|109486 pfam00430, ATP-synt_B, ATP synthase B/B' CF(0)

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 22/90 (24%), Positives = 39/90 (43%)

Query: 487 REERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEK 546
           +E     + A   L    QQ  +   +        ++  +K +E+   E +K+  R +E 
Sbjct: 40  KEAEERLKQAAALLAEAEQQLAQARAEASEIINNAKKEAQKLKEEILAEAQKDAERLLES 99

Query: 547 EREKARQAVERATREARERAAAEARLKAER 576
            R +  Q  E+A  E R++ AA A   AE+
Sbjct: 100 ARAEIEQEKEQALAELRQQVAALAVQIAEK 129

Part of the CF(0) (base unit) of the ATP synthase. The base unit is thought to translocate protons through membrane (inner membrane in mitochondria, thylakoid membrane in plants, cytoplasmic membrane in bacteria). The B subunits are thought to interact with the stalk of the CF(1) subunits. This domain should not be confused with the ab CF(1) proteins (in the head of the ATP synthase) which are found in pfam00006. Length = 132

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 40.9 bits (96), Expect = 0.003
 Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 9/145 (6%)

Query: 453 EAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQ--QDAQERLDREMQQREKG 510
           EA  +A  K + A+E   + +  A    E+        A +   +A+++ + E  ++   
Sbjct: 122 EAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAA 181

Query: 511 EEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEA 570
           E +++ E E   +   + ++K   E +K+ A E       A++      + A  +AAAEA
Sbjct: 182 EAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAE-------AKKKAAAEAKAAAAKAAAEA 234

Query: 571 RLKAERAAVDKANAAARERAERAAV 595
           +  AE+AA  KA   A      A V
Sbjct: 235 KAAAEKAAAAKAAEKAAAAKAAAEV 259

Length = 387

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 40.5 bits (95), Expect = 0.003
 Identities = 33/184 (17%), Positives = 66/184 (35%), Gaps = 9/184 (4%)

Query: 517 EREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATRE----ARERAAAEARL 572
           +++ ++ ++E    +K+I +++++  ++EK+ +     +     +    A +      ++
Sbjct: 37  DKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQI 96

Query: 573 KAERAAVDKANAAARERAERAAVQ--RAQAEARERAAAEARERAERAAAEARERANAEAR 630
               A ++      RE+  R A Q    Q   R    A      E A    R      A 
Sbjct: 97  ADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPAL-LVSPEDAQRSVRLAIYYGAL 155

Query: 631 EKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDN 690
                ER   A         A RA +  A         +E R + A  A+  + ++K   
Sbjct: 156 NPARAERID-ALKATLKQLAAVRAEIA-AEQAELTTLLSEQRAQQAKLAQLLEERKKTLA 213

Query: 691 DLES 694
            L S
Sbjct: 214 QLNS 217

Length = 420

>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed

 Score = 40.7 bits (95), Expect = 0.003
 Identities = 39/183 (21%), Positives = 56/183 (30%), Gaps = 15/183 (8%)

Query: 568 AEARLKAERAAVDKANAAARERAERAAVQRAQAE-----ARERAAAEARERAERAAAEAR 622
           A   L+     VD+A    RE AE AA   A A             +  + AE   AE  
Sbjct: 281 APGALRGSEYVVDEA--LEREPAELAAAAVASAASAVGPVGPGEPNQPDDVAEAVKAEVA 338

Query: 623 ERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARE-RAAAEARERAAAAARA 681
           E    E   +   + A        A++    A ++R        +A A  +  A AA+ A
Sbjct: 339 E-VTDEVAAESVVQVADRDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAA 397

Query: 682 NQNQQKNDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQS-KGGPEPARRTSVGASSNMR 740
            +        L S     + P   P   A   D     +    GP        G      
Sbjct: 398 PEEPA----ALASEAHDETEP-EVPEKAAPIPDPAKPDELAVAGPGDDPAEPDGIRRQDD 452

Query: 741 KAS 743
            +S
Sbjct: 453 FSS 455

Length = 460

>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD

 Score = 41.2 bits (97), Expect = 0.003
 Identities = 47/289 (16%), Positives = 94/289 (32%), Gaps = 63/289 (21%)

Query: 466 KEMRERESFKAARSRESVQPDREERATQQ-DAQERLDR-EMQQREKGEEQRRLERERERE 523
            E+   E        +      E+ A +    +  L+  +       ++ R    +   E
Sbjct: 209 SEIEALE-----AELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEE 263

Query: 524 REEKEREKKRIEKEKERARE-------------------------IEKEREKARQAVERA 558
           RE+ ER+ K IE  ++  R                          ++KE +  +  + + 
Sbjct: 264 REQLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQLQKEEQSQQNQLTQE 323

Query: 559 TREARER------------AAAEARLKAERAAVDKAN-----------AAARERAERAA- 594
             E R++            A     + AE A +DK              +   + E    
Sbjct: 324 ELEERDKELLESLPKLALPAEHVKEIAAELAEIDKPATTDSEIPHRLSGSELTQLEVLIQ 383

Query: 595 -VQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQR-AE 652
            V+R   +A+ +   E RE  E  A   ++ +   + E+ A+    +   + E  +  AE
Sbjct: 384 QVKRELQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAE 443

Query: 653 RAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSR 701
              + R     +     EA E           Q+ N  +LE   +++ +
Sbjct: 444 IEELLRQLETLK-----EAIEALRKTLDEKTKQKINAFELERAITIADK 487

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria [DNA metabolism, Restriction/modification]. Length = 650

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 41.3 bits (97), Expect = 0.003
 Identities = 48/278 (17%), Positives = 80/278 (28%), Gaps = 24/278 (8%)

Query: 253 MPSVATDSSRSAGRATSPPSYMSATDSLRSAGRATSPPSYMSATDSLRSAGRATSPPSYT 312
            P+     +  A  A S         S     RA S P       +  +A     P   +
Sbjct: 152 PPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSS 211

Query: 313 SASPSETNSQVNTTPKSEDLFDSAEDVWLTVSEIPLFTQPTSAPPPSRPPP-PRPTRVSK 371
             S S ++        + D   ++     +         P +  P  RP P   PTR+ +
Sbjct: 212 PISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWE 271

Query: 372 LETGNARKKANEYSSFSNSPQCTHSPKSTRAGTRSSAASQIDELEDFAMSRSWNNVNEYG 431
               N             S +   +  S+    RS + S        A S    + +   
Sbjct: 272 ASGWNGP-----------SSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSS--- 317

Query: 432 EVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERA 491
              S E   SS +++S ++   A+    +  R     R       +  R+  +P R   +
Sbjct: 318 SSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSS 377

Query: 492 TQQDAQERLDREMQQREKGEEQRRLEREREREREEKER 529
               A          R      R     R R R+   R
Sbjct: 378 PAASA---------GRPTRRRARAAVAGRARRRDATGR 406

Length = 1352

>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 52/305 (17%), Positives = 100/305 (32%), Gaps = 34/305 (11%)

Query: 323 VNTTPKSEDLFDSAEDVWLTVSEIPLFTQPTSAPPPSRPPPPRPTRVSKLETGNARKKAN 382
               P  E+L D  E+   T+ +  +    +       P           ++G + + A 
Sbjct: 37  TEYVPYGEELVDYLEEEDPTLRDPQISVVSSVTKLSKGPKDEPKQVKIPRQSGLSEEVAE 96

Query: 383 EYSSFSNSPQCTHSPKSTRAGTRSSAASQIDELEDFAMSRSWNNVNEYGEVPSPEDVESS 442
                          K+T     ++    I EL +         + E    P  +++ S 
Sbjct: 97  A------------EAKATSVAAEATTPKSIQELVEALEELLEELLKETASDPVVQELVSI 144

Query: 443 I-AAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLD 501
                 +       D  E+    AKE             E  Q  ++    + + +E L+
Sbjct: 145 FNDLIDSIKEDNLKDDLESLIASAKE-------------ELDQLSKKLAELKAEEEEELE 191

Query: 502 REMQQR--EKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERAT 559
           R ++++  E   +       R   +E    ++ R+E E+E+    +K  EK RQ +ER  
Sbjct: 192 RALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQA 251

Query: 560 REARERAAAEARLKA----ERAAVDKANAAARERAER-AAVQRAQAEARE-RAAAEARER 613
               ++   E  L+A         +       ER  R A +    +  +    A ++R  
Sbjct: 252 EAHEQKLKNELALQAIELQREFNKEIKEKVEEERNGRLAKLAELNSRLKGLEKALDSRSE 311

Query: 614 AERAA 618
           AE   
Sbjct: 312 AEDEN 316

Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains. Length = 493

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 40.3 bits (95), Expect = 0.003
 Identities = 18/61 (29%), Positives = 40/61 (65%), Gaps = 4/61 (6%)

Query: 490 RATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKERE 549
             T+++ +E++ +  ++ E+ EE    E++ E+++EE+E +  ++  E++R  E EKER+
Sbjct: 262 DKTREEEEEKILKAAEE-ERQEE--AQEKKEEKKKEEREAKLAKLSPEEQRKLE-EKERK 317

Query: 550 K 550
           K
Sbjct: 318 K 318

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 40.7 bits (96), Expect = 0.003
 Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 9/97 (9%)

Query: 552 RQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEAR 611
            Q  ER  +EA      +  L  E+  + +  AAA         +  +A++R +   E  
Sbjct: 240 EQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAAS--------KAKKAKSRIK-RLEKL 290

Query: 612 ERAERAAAEARERANAEAREKEARERASVARTEAEAL 648
           E          E      R     +R      E E +
Sbjct: 291 EARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENV 327

Length = 530

>gnl|CDD|191249 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal region

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 30/173 (17%), Positives = 63/173 (36%), Gaps = 5/173 (2%)

Query: 475 KAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRI 534
           K   + E   P  E     ++  +   R+ +Q+ + E + +L+   E+    K+ E    
Sbjct: 68  KEKSTSEPTVPPEEAEPHAEEEGQLAVRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPG 127

Query: 535 EKEK-ERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERA 593
           ++ + +  + +  E    RQ    A +   E    E     E  A ++     +E+A   
Sbjct: 128 KEPQLDEDKFLLAEDSDDRQETLEAGKVHEE---TEDSYHVEETASEQYKQDMKEKASEQ 184

Query: 594 AVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAE 646
             + ++ E  E+A     E  +    +  E  N     K  +E  +    E +
Sbjct: 185 ENEDSK-EPVEKAERTKAETDDVTEEDYDEEDNPVEDSKAIKEELAKEPVEEQ 236

This family includes the N-terminal regions of the junctin, junctate and aspartyl beta-hydroxylase proteins. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin. Aspartyl beta-hydroxylase catalyzes the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins. Length = 240

>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 499 RLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREI 544
             D+E  QREK EE+  L+ ++   + +K+ EKK+ E EK    +I
Sbjct: 547 LDDKEELQREK-EEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKI 591

Length = 651

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 40.4 bits (95), Expect = 0.004
 Identities = 59/258 (22%), Positives = 91/258 (35%), Gaps = 31/258 (12%)

Query: 398 KSTRAGTRSSAASQIDELEDFAMSRSWNNVNEYGEVPSPEDVESSIAAASAAAMKEAMD- 456
           +  RA     A  +I+ LE+        ++ E          E    A         ++ 
Sbjct: 497 RLERAEDLVEAEDRIERLEERR-----EDLEELIAERRETIEEKRERAEELRERAAELEA 551

Query: 457 RAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDR-EMQQREKGEEQRR 515
            AE K   A E  E     A  +RE V     + A  ++  E L+R         + +  
Sbjct: 552 EAEEKREAAAEAEEE----AEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDE 607

Query: 516 LEREREREREEKEREKKRIEK---EKERAREIEKE------------REKARQAVERATR 560
           +ER RE+     E   +R E+   ++ER RE+E E            +E+A + +E+   
Sbjct: 608 IERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEE 667

Query: 561 EARERAAAEARLKAERAAVDKANAAARE-RAERAAVQRAQAEARERAAAEARERAERAAA 619
           +  E       L+AE  AV+       E R  R A+        E   A   E  E  + 
Sbjct: 668 KLDELREERDDLQAEIGAVENELEELEELRERREAL----ENRVEALEALYDEAEELESM 723

Query: 620 EARERANAEAREKEARER 637
               RA    R  E  ER
Sbjct: 724 YGDLRAELRQRNVETLER 741

Length = 880

>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated

 Score = 40.6 bits (95), Expect = 0.004
 Identities = 33/157 (21%), Positives = 52/157 (33%), Gaps = 29/157 (18%)

Query: 486 DREERATQQDAQERLDREMQQREKGEEQRRLERERERE--------------REEKEREK 531
             E +     A++R     +Q+EK      L R R R                E K+   
Sbjct: 280 TDEFKEHH--AEQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRT 337

Query: 532 KRIEKEKERAREIEKEREKARQAVERATREARERAAAE----ARLKAERAAVDKANAAAR 587
               + K R +EI ++R  A + + R      E         AR +A RAAV        
Sbjct: 338 AEKNEAKARKKEIAQKRRAAEREINR------EARQERAAAMARARARRAAVKAKKKGLI 391

Query: 588 ERAERAAVQRAQAEARERAAAEARERAERAAAEARER 624
           + +     +   +E  E   +  +  A   A   RE 
Sbjct: 392 DASPN---EDTPSENEESKGSPPQVEATTTAEPNREP 425

Length = 429

>gnl|CDD|224482 COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]

 Score = 40.4 bits (95), Expect = 0.004
 Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 9/93 (9%)

Query: 610 ARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAA--------S 661
           A E+AE A A A E      R + A  +A +A+ EA+ L +A+    +RA          
Sbjct: 92  ALEQAEAALAAA-EAQLRNLRAQLASAQALIAQAEAQDLDQAQNELERRAELAQRGVVSR 150

Query: 662 EARERAAAEARERAAAAARANQNQQKNDNDLES 694
           E  +RA A  +   AA A A   Q++N   LES
Sbjct: 151 EELDRARAALQAAEAALAAAQAAQKQNLALLES 183

Length = 352

>gnl|CDD|224482 COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]

 Score = 40.4 bits (95), Expect = 0.004
 Identities = 31/142 (21%), Positives = 62/142 (43%), Gaps = 12/142 (8%)

Query: 500 LDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERAT 559
             ++ Q  +KG+   R++    R     E+ +  +   + + R +  +   A+  + +A 
Sbjct: 68  NVKDNQLVKKGDVLFRIDPRDYRAA--LEQAEAALAAAEAQLRNLRAQLASAQALIAQAE 125

Query: 560 REARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAA 619
            +  ++A  E      RA + +    +RE  +RA      AEA   AAA+A ++   A  
Sbjct: 126 AQDLDQAQNELER---RAELAQRGVVSREELDRARAALQAAEA-ALAAAQAAQKQNLALL 181

Query: 620 EAR------ERANAEAREKEAR 635
           E+       + A+AEA   +A+
Sbjct: 182 ESEVSGAQAQVASAEAALDQAK 203

Length = 352

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 40.7 bits (95), Expect = 0.004
 Identities = 36/209 (17%), Positives = 72/209 (34%), Gaps = 13/209 (6%)

Query: 452 KEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGE 511
             A    EA+ +  +E++  E     +  E  +   ++   +++  E        +EK  
Sbjct: 723 LLADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSEL-----SLKEKEL 777

Query: 512 EQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEAR 571
            +   + E+ +  EEKE + K  E+E     E  KE  +  +  +    +  +    E  
Sbjct: 778 AEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELE 837

Query: 572 LKAERA-AVDKANAAARERAER------AAVQRAQAEARERAAAEARERAERAAAEARER 624
             A       K    A E  ER            +   +E    E + + E  + E +E+
Sbjct: 838 ELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEK 897

Query: 625 -ANAEAREKEARERASVARTEAEALQRAE 652
               E  E+  ++     +      + AE
Sbjct: 898 EEKKELEEESQKDNLLEEKENEIEERIAE 926

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional

 Score = 40.4 bits (95), Expect = 0.004
 Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 12/120 (10%)

Query: 561 EARERAAAEARLKAERAAVDKANAAARERAERAAV--QRAQAEARERAAAEARER--AER 616
           +AR+   AE +   E  A  KA    ++  ++  +  Q+AQ +  E+A  E ++      
Sbjct: 166 QARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLE 225

Query: 617 AAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAA 676
           ++ +  ++  +E R  E+R R S+AR E EA  RAER        EARE A    +++ A
Sbjct: 226 SSLQKDQQQLSELRANESRLRDSIARAEREAKARAER--------EAREAARVRDKQKQA 277

Length = 428

>gnl|CDD|109486 pfam00430, ATP-synt_B, ATP synthase B/B' CF(0)

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 4/95 (4%)

Query: 588 ERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEARE--KEARERASVARTEA 645
           ER E+ A    +AE R + AA     AE+  A+AR  A+       KEA++       EA
Sbjct: 30  ERKEKIANNIKEAEERLKQAAALLAEAEQQLAQARAEASEIINNAKKEAQKLKEEILAEA 89

Query: 646 EA-LQRAERAAVQRAASEARERAAAEARERAAAAA 679
           +   +R   +A      E +E+A AE R++ AA A
Sbjct: 90  QKDAERLLESARAEIEQE-KEQALAELRQQVAALA 123

Part of the CF(0) (base unit) of the ATP synthase. The base unit is thought to translocate protons through membrane (inner membrane in mitochondria, thylakoid membrane in plants, cytoplasmic membrane in bacteria). The B subunits are thought to interact with the stalk of the CF(1) subunits. This domain should not be confused with the ab CF(1) proteins (in the head of the ATP synthase) which are found in pfam00006. Length = 132

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 39.9 bits (94), Expect = 0.004
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 19/84 (22%)

Query: 457 RAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRL 516
             E   R   + RE E  K              +A +++ QE        +EK EE+++ 
Sbjct: 254 SPEVL-RKVDKTREEEEEKI------------LKAAEEERQEEA------QEKKEEKKKE 294

Query: 517 EREREREREEKEREKKRIEKEKER 540
           ERE +  +   E ++K  EKE+++
Sbjct: 295 EREAKLAKLSPEEQRKLEEKERKK 318

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 546 KEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARER 605
           KE ++ +   ++      ++AA +A L+AE+   +    A  E+    A   A  EA   
Sbjct: 107 KEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAA 166

Query: 606 AAAEARERAERAAAEARERANAE 628
              EA    E  A EA    +AE
Sbjct: 167 EEEEA---EEAPAEEAPAEESAE 186

Length = 186

>gnl|CDD|119241 pfam10721, DUF2514, Protein of unknown function (DUF2514)

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 36/106 (33%), Positives = 44/106 (41%), Gaps = 11/106 (10%)

Query: 566 AAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERA 625
            A   +  A+R A D       E A RA  QR QA     A  EA + A+  AA AR  A
Sbjct: 27  DAGWQQKWADRDAADALAEVIAETAARAEEQRRQA-----AQNEAAKDAQEEAAAARADA 81

Query: 626 NAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEA 671
                   A   A   R EA+ L  A+       A+ AR +AAA A
Sbjct: 82  AD------ADAAAGRLRQEADKLAAAKSCPTSDTAAAARGKAAARA 121

This family is conserved in bacteria and some viruses. The function is not known. Length = 162

>gnl|CDD|119241 pfam10721, DUF2514, Protein of unknown function (DUF2514)

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 7/93 (7%)

Query: 589 RAERAAVQRAQAEARERAAAEARERAERAA--AEARERANAEAREKEARERASVARTEAE 646
             E A  Q+  A+ R+ A A A   AE AA   E R +A      K+A+E A+ AR +A 
Sbjct: 24  SWEDAGWQQKWAD-RDAADALAEVIAETAARAEEQRRQAAQNEAAKDAQEEAAAARADAA 82

Query: 647 ALQRAERAAVQRAASEARERAAAEARERAAAAA 679
                  AA  R   EA + AAA++   +  AA
Sbjct: 83  DA----DAAAGRLRQEADKLAAAKSCPTSDTAA 111

This family is conserved in bacteria and some viruses. The function is not known. Length = 162

>gnl|CDD|115307 pfam06637, PV-1, PV-1 protein (PLVAP)

 Score = 40.4 bits (94), Expect = 0.004
 Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 26/185 (14%)

Query: 512 EQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEA- 570
           E++     + RE + +E++      +K +A  I  +++K    +  A R++    + +  
Sbjct: 194 EEQLEACGKARELQHQEQQLAEENLQKVQALCIPLDKDKFEADLLNAWRDSIIPRSLDNL 253

Query: 571 ------RLKAERAAVDKA----------NAAARERAERAAVQRAQAEARE--RAAAEARE 612
                  L  E A++ +A                R  RA ++R   E  +  R   EA E
Sbjct: 254 GYNLHHPLGPELASIRRACDHLPGIMSSKIEELARGLRADIERVARENADLQRQKLEA-E 312

Query: 613 RAERAAAEARERANAEAREKEARERASVART-----EAEALQRAERAAVQRAASEARERA 667
           +A +AA EA+ +A  EA+ +EA+ +A  AR      E +A  RAER  + +   EA++R 
Sbjct: 313 QAAQAAQEAKAKAEKEAQAREAKLQAECARQTQLALEEKAALRAERDNLAKEL-EAKKRE 371

Query: 668 AAEAR 672
           A + R
Sbjct: 372 AEQLR 376

This family consists of several PV-1 (PLVAP) proteins which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms. The function of this family is unknown. Length = 442

>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family

 Score = 40.0 bits (94), Expect = 0.004
 Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 4/106 (3%)

Query: 556 ERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAE 615
            +  REA    A E R   E    D+  A A E        + + +  +       E  +
Sbjct: 1   LKELREALAELAKELRKLTE----DEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLD 56

Query: 616 RAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAAS 661
              A+          E+E  E  + A      L+  + A  +   +
Sbjct: 57  ELEAKPAASGEGGGGEEEEEEAKAEAAEFRAYLRGGDDALAEERKA 102

This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease [Mobile and extrachromosomal element functions, Prophage functions]. Length = 384

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	914
KOG0431	453	consensus Auxilin-like protein and related protein	100.0
PRK09510	387	tolA cell envelope integrity inner membrane protei	99.29
COG3064	387	TolA Membrane protein involved in colicin uptake [	99.08
PRK09510	387	tolA cell envelope integrity inner membrane protei	98.98
TIGR02794	346	tolA_full TolA protein. TolA couples the inner mem	98.82
COG3064	387	TolA Membrane protein involved in colicin uptake [	98.61
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	98.45
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	98.38
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	98.38
TIGR02794	346	tolA_full TolA protein. TolA couples the inner mem	98.35
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	98.33
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	98.31
PTZ00266	1021	NIMA-related protein kinase; Provisional	98.27
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	98.21
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	98.21
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	98.14
PRK14288	369	chaperone protein DnaJ; Provisional	98.09
PRK14296	372	chaperone protein DnaJ; Provisional	97.97
PRK14279	392	chaperone protein DnaJ; Provisional	97.97
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	97.96
PRK14285	365	chaperone protein DnaJ; Provisional	97.94
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	97.88
PRK14299	291	chaperone protein DnaJ; Provisional	97.87
PRK14295	389	chaperone protein DnaJ; Provisional	97.86
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	97.86
PRK14286	372	chaperone protein DnaJ; Provisional	97.85
PRK10266	306	curved DNA-binding protein CbpA; Provisional	97.83
PRK14282	369	chaperone protein DnaJ; Provisional	97.83
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	97.83
PRK10767	371	chaperone protein DnaJ; Provisional	97.82
PRK14277	386	chaperone protein DnaJ; Provisional	97.81
PTZ00037	421	DnaJ_C chaperone protein; Provisional	97.8
PRK14278	378	chaperone protein DnaJ; Provisional	97.8
PRK14294	366	chaperone protein DnaJ; Provisional	97.8
PRK14284	391	chaperone protein DnaJ; Provisional	97.79
PRK14281	397	chaperone protein DnaJ; Provisional	97.78
PRK14276	380	chaperone protein DnaJ; Provisional	97.78
PRK14283	378	chaperone protein DnaJ; Provisional	97.78
PRK14280	376	chaperone protein DnaJ; Provisional	97.77
PRK14287	371	chaperone protein DnaJ; Provisional	97.76
PRK14297	380	chaperone protein DnaJ; Provisional	97.76
PRK14291	382	chaperone protein DnaJ; Provisional	97.74
PRK14301	373	chaperone protein DnaJ; Provisional	97.72
PRK14290	365	chaperone protein DnaJ; Provisional	97.7
PRK14298	377	chaperone protein DnaJ; Provisional	97.69
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	97.62
PRK14293	374	chaperone protein DnaJ; Provisional	97.61
PRK14300	372	chaperone protein DnaJ; Provisional	97.6
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	97.59
PRK14292	371	chaperone protein DnaJ; Provisional	97.58
PRK05014	171	hscB co-chaperone HscB; Provisional	97.55
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	97.51
PRK14289	386	chaperone protein DnaJ; Provisional	97.48
PHA03102	153	Small T antigen; Reviewed	97.46
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.46
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	97.42
PRK03578	176	hscB co-chaperone HscB; Provisional	97.4
PRK00294	173	hscB co-chaperone HscB; Provisional	97.37
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	97.35
PRK01356	166	hscB co-chaperone HscB; Provisional	97.34
PTZ00100	116	DnaJ chaperone protein; Provisional	97.27
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	97.23
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	97.18
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	97.14
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	96.93
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.91
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	96.71
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	96.65
KOG0163	1259	consensus Myosin class VI heavy chain [Cytoskeleto	96.63
KOG4364	811	consensus Chromatin assembly factor-I [Chromatin s	96.57
KOG4364	811	consensus Chromatin assembly factor-I [Chromatin s	96.48
PHA02624	647	large T antigen; Provisional	96.37
PF05672	171	MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604	96.14
PRK01773	173	hscB co-chaperone HscB; Provisional	95.84
KOG2072	988	consensus Translation initiation factor 3, subunit	95.8
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	95.65
KOG2891	445	consensus Surface glycoprotein [General function p	95.55
PRK07735	430	NADH dehydrogenase subunit C; Validated	95.14
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	95.04
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	94.98
PF05262	489	Borrelia_P83: Borrelia P83/100 protein; InterPro:	94.92
PRK07735	430	NADH dehydrogenase subunit C; Validated	94.91
KOG0163	1259	consensus Myosin class VI heavy chain [Cytoskeleto	94.45
PF12037	276	DUF3523: Domain of unknown function (DUF3523); Int	94.39
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	93.91
KOG4661	940	consensus Hsp27-ERE-TATA-binding protein/Scaffold	93.79
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	93.39
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	92.33
KOG2891	445	consensus Surface glycoprotein [General function p	92.32
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	92.03
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	89.56
KOG2412	591	consensus Nuclear-export-signal (NES)-containing p	88.63
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	87.57
KOG3054	299	consensus Uncharacterized conserved protein [Funct	84.19
KOG2412	591	consensus Nuclear-export-signal (NES)-containing p	82.49

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=100.00  E-value=1e-39  Score=370.40  Aligned_cols=228  Identities=47%  Similarity=0.692  Sum_probs=187.2

Q ss_pred             hhcccchhhhhcCCCCCCCCCCCCCCCCCCccCCCCCCCCCCC---C-cCccCCCcc----ccccCCCcccccchhhhhc
Q 002508          686 QKNDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPA---R-RTSVGASSN----MRKASSTTNIVDDLSSIFG  757 (914)
Q Consensus       686 ~~~~~~lesFfs~g~R~~sapr~r~~~~d~~fdsq~q~~~~~~---~-rtSss~Ssn----m~k~~~~~~~~dd~~s~fg  757 (914)
                      ......+++||....+.++++..+.+.+++|.+..+.+.+..-   + ..+...+.+    +.+++.-++....+...|+
T Consensus       195 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  274 (453)
T KOG0431|consen  195 QATAPKADSFFNSTSRGASAPADPFADLDDLSSGSNASKSGSSSDLSSRVSPGITETTDSPPSKTSSPPNQQKKSPPDFQ  274 (453)
T ss_pred             cCCCccccccccccccCCCCCCCccccccchhhhcccCCCCCcccccCCCCCCCCCCCCCchhhhcccccchhccchhhh
Confidence            3455678899998888888888888888777665554433221   1 111111111    6666666777777767776


Q ss_pred             cCCCC-------------CCcc------ccccCChHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH----HH
Q 002508          758 AAGSS-------------AGEF------QDVEGETEERRRARLERHQRTQERAAKALAEKNERDLQAQRDQAER----HR  814 (914)
Q Consensus       758 ~~~~s-------------~~~f------~~~~g~~~~r~~a~~~r~~~~~~~~~~~l~ek~~r~~~~~~e~~er----~~  814 (914)
                      ..+.+             ...|      ..+.|...+++..+..+++.+..+....+.++..+|++-.++++++    .+
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~k~~~~~ae~~~e~~r  354 (453)
T KOG0431|consen  275 AKPSSESPEASTQKRPNYAQKRSDVPPGNTERGKRAESSSTRTKKQMDTFSDLLNPQGFKSTSDEKRPREIAEMRKELSR  354 (453)
T ss_pred             cccCccchhhccccccchhccCCCCCcccccccccccccccccchhhhhhhhhhccccccchhhhhhHHHHHHHHHHHHh
Confidence            64311             1111      1345888888899999999999999999999999999888999999    89


Q ss_pred             hhHhHHHHHHHHhccCCchHHHHHhhhccccCCCCCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHH
Q 002508          815 IAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIA  894 (914)
Q Consensus       815 l~d~id~ki~~W~~GKe~niRaLLstL~~VLW~~~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iA  894 (914)
                      |.|.||.+|..|..||++||||||||||||||++|+|++|+|+||||+++|||+|||||||||||||+++|++++|||||
T Consensus       355 ~~e~~d~~I~~W~~GKE~NIRALLSTLh~VLW~es~WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Ia  434 (453)
T KOG0431|consen  355 LMEPLDEEIRRWSEGKEGNIRALLSTLHYVLWPESGWQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIA  434 (453)
T ss_pred             hcchHHHHHHHhcccccccHHHHHHHHhHhhcCccCcccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCC
Q 002508          895 EKVFDLLKEAWNKFNSEEL  913 (914)
Q Consensus       895 e~vF~~LneAwe~F~~~e~  913 (914)
                      +.||++|++||++|..+++
T Consensus       435 ekvfd~l~eawn~f~~~~~  453 (453)
T KOG0431|consen  435 EKVFDALSEAWNKFNQQED  453 (453)
T ss_pred             HHHHHHHHHHHHhhhccCC
Confidence            9999999999999998875

>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional

Probab=99.29  E-value=5.3e-09  Score=117.84  Aligned_cols=12  Identities=8%  Similarity=0.318  Sum_probs=8.9

Q ss_pred             ccchhhhhcCCC
Q 002508          689 DNDLESFFSMSS  700 (914)
Q Consensus       689 ~~~lesFfs~g~  700 (914)
                      ...|++||+.+.
T Consensus       256 e~~~dd~~~gl~  267 (387)
T PRK09510        256 AAEVDDLFGGLD  267 (387)
T ss_pred             HHHHHHHhhccc
Confidence            446999997655

>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

Probab=99.08  E-value=1.4e-07  Score=102.35  Aligned_cols=29  Identities=17%  Similarity=0.209  Sum_probs=17.6

Q ss_pred             HhhhccccCC-CC--CccccccccccchHHHH
Q 002508          838 LATMQYVLWP-ES--GWQPVSLTDLITAAAVK  866 (914)
Q Consensus       838 LstL~~VLW~-~~--~Wk~v~l~dL~~~~~VK  866 (914)
                      .|.|+.-|-| ++  ++++++-.+-++...|.
T Consensus       327 ~C~l~ikL~pdGtl~~~~~~~Gd~~lCqAals  358 (387)
T COG3064         327 TCRLRIKLAPDGTLLDIKPEGGDPALCQAALS  358 (387)
T ss_pred             eeEEEEEEcCCcceeeccccCCChHHHHHHHH
Confidence            5888876755 33  56666666655555553

>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional

Probab=98.98  E-value=4.5e-07  Score=102.51  Aligned_cols=14  Identities=29%  Similarity=0.473  Sum_probs=8.8

Q ss_pred             CCCCCccCCCCCCC
Q 002508          711 NTSDSLFDSQSKGG  724 (914)
Q Consensus       711 ~~~d~~fdsq~q~~  724 (914)
                      ..+|+||+....+.
T Consensus       257 ~~~dd~~~gl~~~~  270 (387)
T PRK09510        257 AEVDDLFGGLDSGK  270 (387)
T ss_pred             HHHHHHhhcccccc
Confidence            44788886655443

>TIGR02794 tolA_full TolA protein

Probab=98.82  E-value=1.1e-06  Score=98.78  Aligned_cols=47  Identities=40%  Similarity=0.483  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhc
Q 002508          646 EALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFS  697 (914)
Q Consensus       646 Ear~~aEr~A~era~~Ear~ra~~eA~~raaaear~~~~~~~~~~~lesFfs  697 (914)
                      +++.++|. |.+++++++.+++..++..++.+++..++    ....|++||+
T Consensus       193 eak~kae~-a~~ka~~ea~~ka~~~~~~~~~~~a~~k~----~~~~~~d~~g  239 (346)
T TIGR02794       193 EAKAKAEA-AKAKAAAEAAAKAEAEAAAAAAAEAERKA----DEAELGDIFG  239 (346)
T ss_pred             HHHHHHHH-HHHhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHhhhhhhc
Confidence            44455554 55566666655555555444443333222    1334777774

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.

>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

Probab=98.61  E-value=2.5e-05  Score=85.29  Aligned_cols=21  Identities=24%  Similarity=0.355  Sum_probs=13.9

Q ss_pred             ccchhhhhcCCCCCCCCCCCC
Q 002508          689 DNDLESFFSMSSRPSSAPRPR  709 (914)
Q Consensus       689 ~~~lesFfs~g~R~~sapr~r  709 (914)
                      ...|+|||+.++-...+|+..
T Consensus       258 ~aaldD~fg~ls~g~~a~~~g  278 (387)
T COG3064         258 AAALDDIFGGLSSGKNAPKTG  278 (387)
T ss_pred             HhhHHHHhccccccCCCCCcC
Confidence            346999998877555555443

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=98.45  E-value=2.8e-07  Score=76.90  Aligned_cols=56  Identities=30%  Similarity=0.440  Sum_probs=49.4

Q ss_pred             ccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       851 Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      |.-|||..-++..+||++|+++++.+|||++...      ...+...|..|++||++|.+..
T Consensus         4 y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~------~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        4 YEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD------KEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc------hHHHHHHHHHHHHHHHHHcCCC
Confidence            6778898889999999999999999999998742      3578999999999999998864

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=2.6e-07  Score=101.86  Aligned_cols=65  Identities=25%  Similarity=0.330  Sum_probs=56.1

Q ss_pred             ccccCCCCCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcCC
Q 002508          842 QYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEEL  913 (914)
Q Consensus       842 ~~VLW~~~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e~  913 (914)
                      ..|+-...=|+-|++...++..+||+||||++|++||||++.+       .-|...|..||.||++|+|+|.
T Consensus        10 ~~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpdd-------p~A~e~F~~in~AYEVLsDpek   74 (336)
T KOG0713|consen   10 EAVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDD-------PNANEKFKEINAAYEVLSDPEK   74 (336)
T ss_pred             hhhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-------HHHHHHHHHHHHHHHHhcCHHH
Confidence            3444445678899999999999999999999999999999964       1588999999999999999873

>cd06257 DnaJ DnaJ domain or J-domain

Probab=98.38  E-value=5e-07  Score=73.97  Aligned_cols=53  Identities=28%  Similarity=0.435  Sum_probs=47.0

Q ss_pred             ccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhh
Q 002508          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNS  910 (914)
Q Consensus       851 Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~  910 (914)
                      |+-|||..-++..+||++|+++++.+|||+....       ..+...|..|++||++|++
T Consensus         3 y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~-------~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           3 YDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD-------PEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-------HHHHHHHHHHHHHHHHhcC
Confidence            5678888889999999999999999999998742       4788999999999999874

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>TIGR02794 tolA_full TolA protein

Probab=98.35  E-value=0.00015  Score=81.67  Aligned_cols=38  Identities=47%  Similarity=0.532  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002508          642 RTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARA  681 (914)
Q Consensus       642 ~ae~Ear~~aEr~A~era~~Ear~ra~~eA~~raaaear~  681 (914)
                      +++++++.++| +++.++++ +++++.++|.+++.+++.+
T Consensus       182 kaea~~ka~ae-eak~kae~-a~~ka~~ea~~ka~~~~~~  219 (346)
T TIGR02794       182 KAEAEAKAKAE-EAKAKAEA-AKAKAAAEAAAKAEAEAAA  219 (346)
T ss_pred             HHHHHHHHHHH-HHHHHHHH-HHHhhhhhHHHHHHHHHHH
Confidence            33344444555 45555444 5555555555444444433

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=4.4e-07  Score=101.96  Aligned_cols=56  Identities=25%  Similarity=0.384  Sum_probs=50.5

Q ss_pred             CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      -|+-|+|..-++..+|||||||+++++|||+++..       .-|+..|..||+||++|+|.+
T Consensus         6 yYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~-------~~AeeKFKEI~eAYEVLsD~e   61 (371)
T COG0484           6 YYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGD-------KEAEEKFKEINEAYEVLSDPE   61 (371)
T ss_pred             hhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-------HHHHHHHHHHHHHHHHhCCHH
Confidence            37889999999999999999999999999999842       258899999999999999875

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=98.31  E-value=6e-07  Score=76.20  Aligned_cols=56  Identities=27%  Similarity=0.405  Sum_probs=49.1

Q ss_pred             ccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       851 Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      |.-|||..-++..+|+++|+++++.+|||++.+.+      -.++.+|..|++||++|.+.+
T Consensus         3 y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~------~~~~~~~~~i~~Ay~~L~~~~   58 (64)
T PF00226_consen    3 YEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDE------AEAEEKFARINEAYEILSDPE   58 (64)
T ss_dssp             HHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTH------HHHHHHHHHHHHHHHHHHSHH
T ss_pred             HHHCCCCCCCCHHHHHHHHHhhhhccccccchhhh------hhhhHHHHHHHHHHHHhCCHH
Confidence            56689999999999999999999999999998532      468899999999999998753

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=98.27  E-value=4.9e-06  Score=103.83  Aligned_cols=7  Identities=43%  Similarity=0.434  Sum_probs=3.1

Q ss_pred             CCccccc
Q 002508          735 ASSNMRK  741 (914)
Q Consensus       735 ~Ssnm~k  741 (914)
                      .+.+|-.
T Consensus       713 ~~~~~~~  719 (1021)
T PTZ00266        713 PSSHMMH  719 (1021)
T ss_pred             cCcccee
Confidence            3445443

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=98.21  E-value=1.6e-06  Score=94.19  Aligned_cols=62  Identities=19%  Similarity=0.326  Sum_probs=55.8

Q ss_pred             CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508          850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE  911 (914)
Q Consensus       850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~  911 (914)
                      -|+-|+|..-++..+||++||++++.+||||+...|.+.+....|+..|..|++||++++..
T Consensus       202 ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~  263 (267)
T PRK09430        202 AYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ  263 (267)
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence            45678899999999999999999999999999887877777778999999999999999864

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.21  E-value=0.00063  Score=81.39  Aligned_cols=49  Identities=29%  Similarity=0.508  Sum_probs=24.5

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 002508          491 ATQQDAQERLDREMQQREKGEEQRRLERERE-REREEKEREKKRIEKEKE  539 (914)
Q Consensus       491 ~~~~e~qerl~rE~~e~e~~e~~er~erEre-reree~ere~r~~E~e~e  539 (914)
                      +...++|.+.+||..++.++|++++.+|||+ .||..+...++++|+.|+
T Consensus       333 Rq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQRe  382 (1118)
T KOG1029|consen  333 RQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQRE  382 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555555555555555555566666555 333333333444444444

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=1.8e-06  Score=98.09  Aligned_cols=63  Identities=27%  Similarity=0.363  Sum_probs=55.8

Q ss_pred             cCCCCCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508          845 LWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE  911 (914)
Q Consensus       845 LW~~~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~  911 (914)
                      +|+.--|--|+|..-+|..+||++||+.|+.+||||+.    ++++|..|+.+|..|..||++|.|.
T Consensus         6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~----dpd~K~~AE~~F~~i~~AyEVLsDp   68 (546)
T KOG0718|consen    6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHT----DPDQKKAAEEKFQRIQRAYEVLSDP   68 (546)
T ss_pred             cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccC----ChhHHHHHHHHHHHHHHHHHHhcCh
Confidence            45444566788999999999999999999999999997    4689999999999999999999885

>PRK14288 chaperone protein DnaJ; Provisional

Probab=98.09  E-value=2.5e-06  Score=96.42  Aligned_cols=56  Identities=29%  Similarity=0.458  Sum_probs=49.1

Q ss_pred             CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      -|+-|+|..-++..+||+||||+++++||||++..   .    -|+..|..|++||++|.+.+
T Consensus         5 yY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~---~----~a~~~f~~i~~AYevLsd~~   60 (369)
T PRK14288          5 YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGD---K----EAEEKFKLINEAYGVLSDEK   60 (369)
T ss_pred             hHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc---c----HHHHHHHHHHHHHHHhccHH
Confidence            37889999999999999999999999999998632   1    37889999999999999865

>PRK14296 chaperone protein DnaJ; Provisional

Probab=97.97  E-value=5.7e-06  Score=93.76  Aligned_cols=54  Identities=17%  Similarity=0.283  Sum_probs=48.0

Q ss_pred             ccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       851 Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      |+-|+|...++..+||++|||+++++|||++...        -|+..|..|++||++|.+++
T Consensus         7 Y~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~--------~a~~~F~~i~~AyevLsD~~   60 (372)
T PRK14296          7 YEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSP--------DAHDKMVEINEAADVLLDKD   60 (372)
T ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------hHHHHHHHHHHHHHHhcCHH
Confidence            7789999999999999999999999999998621        26778999999999999875

>PRK14279 chaperone protein DnaJ; Provisional

Probab=97.97  E-value=6.5e-06  Score=93.85  Aligned_cols=56  Identities=25%  Similarity=0.363  Sum_probs=49.2

Q ss_pred             CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      -|.-|+|..-++..+||++|||+++++||||++..       .-|+..|..|++||++|.|++
T Consensus        11 yy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-------~~a~~~f~~i~~Ay~vLsD~~   66 (392)
T PRK14279         11 FYKELGVSSDASAEEIKKAYRKLARELHPDANPGD-------PAAEERFKAVSEAHDVLSDPA   66 (392)
T ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-------hHHHHHHHHHHHHHHHhcchh
Confidence            36789999999999999999999999999998632       137789999999999999876

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=7.5e-06  Score=91.18  Aligned_cols=57  Identities=25%  Similarity=0.372  Sum_probs=49.6

Q ss_pred             CCCCCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          846 WPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       846 W~~~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      |+-.-|.-|+|...++..+|||+|||+.+++||||++.          |...|..|+.||++|+|.|
T Consensus         2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~----------~~ekfkei~~AyevLsd~e   58 (337)
T KOG0712|consen    2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD----------AGEKFKEISQAYEVLSDPE   58 (337)
T ss_pred             cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc----------HHHHHHHHHHHHHHhcCHH
Confidence            44445677889999999999999999999999999983          6678999999999999865

>PRK14285 chaperone protein DnaJ; Provisional

Probab=97.94  E-value=8e-06  Score=92.30  Aligned_cols=56  Identities=27%  Similarity=0.412  Sum_probs=48.9

Q ss_pred             CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      -|+-|+|...++..+||++||++++.+||||+...       .-|+..|..|++||++|.+++
T Consensus         5 ~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-------~~a~~~f~~i~~Ay~vL~d~~   60 (365)
T PRK14285          5 YYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN-------KEAESIFKEATEAYEVLIDDN   60 (365)
T ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-------HHHHHHHHHHHHHHHHHcCcc
Confidence            36789999999999999999999999999998632       137789999999999999875

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=1.4e-05  Score=82.68  Aligned_cols=64  Identities=30%  Similarity=0.529  Sum_probs=50.2

Q ss_pred             ccccCCCCCcccc------ccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508          842 QYVLWPESGWQPV------SLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE  911 (914)
Q Consensus       842 ~~VLW~~~~Wk~v------~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~  911 (914)
                      ..+|-|++.|-.|      .|..-++..+||+-||++.|.|||||++..      ..-|++.|++|..||..|.+.
T Consensus        41 eRllrpgstyfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd------~~rAqkAFdivkKA~k~l~n~  110 (250)
T KOG1150|consen   41 ERLLRPGSTYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDD------AERAQKAFDIVKKAYKLLEND  110 (250)
T ss_pred             HHHhcCCccccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCccc------HHHHHHHHHHHHHHHHHHhCH
Confidence            3456666655544      444466789999999999999999999852      347999999999999998764

>PRK14299 chaperone protein DnaJ; Provisional

Probab=97.87  E-value=1.1e-05  Score=88.56  Aligned_cols=55  Identities=22%  Similarity=0.329  Sum_probs=47.5

Q ss_pred             CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      -|.-|+|..-++..+||++||++++++|||++...        -|+..|..||+||++|++.+
T Consensus         6 ~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------~~~~~f~~i~~Ay~~L~d~~   60 (291)
T PRK14299          6 YYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSP--------GAEEKFKEINEAYTVLSDPE   60 (291)
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh--------hHHHHHHHHHHHHHHhcCHH
Confidence            36778999999999999999999999999998621        26778999999999998753

>PRK14295 chaperone protein DnaJ; Provisional

Probab=97.86  E-value=1.3e-05  Score=91.37  Aligned_cols=57  Identities=28%  Similarity=0.400  Sum_probs=49.9

Q ss_pred             CCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          849 SGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       849 ~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      .-|.-|+|..-++..+||++||++++.+|||++...       ..|+..|..|++||++|.+.+
T Consensus        10 d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-------~~a~~~f~~i~~Ay~vL~d~~   66 (389)
T PRK14295         10 DYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGD-------AKAEERFKEISEAYDVLSDEK   66 (389)
T ss_pred             CHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-------hhHHHHHHHHHHHHHHHCchh
Confidence            458889999999999999999999999999998632       147889999999999999864

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=1.2e-05  Score=88.55  Aligned_cols=55  Identities=36%  Similarity=0.537  Sum_probs=49.2

Q ss_pred             ccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       851 Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      |.-|||....++.+|+++|++.+|.|||||++.+   ++    |..-|..|.+||++|.+++
T Consensus         8 Y~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~d---P~----A~ekFq~L~eAy~VL~D~~   62 (296)
T KOG0691|consen    8 YDLLGISEDATDAEIKKAYRKKALQYHPDKNPGD---PQ----AAEKFQELSEAYEVLSDEE   62 (296)
T ss_pred             HHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC---hH----HHHHHHHHHHHHHHhcCHH
Confidence            5678999999999999999999999999999953   22    8999999999999999875

>PRK14286 chaperone protein DnaJ; Provisional

Probab=97.85  E-value=1.3e-05  Score=90.90  Aligned_cols=56  Identities=21%  Similarity=0.353  Sum_probs=48.6

Q ss_pred             CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      -|+-|+|..-++..+||++||++++++|||++...       ..|+..|..|++||++|++.+
T Consensus         6 ~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-------~~a~~~f~~i~~Ay~vL~d~~   61 (372)
T PRK14286          6 YYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGN-------KESEEKFKEATEAYEILRDPK   61 (372)
T ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-------hHHHHHHHHHHHHHHHhccHH
Confidence            36778999999999999999999999999998632       137889999999999998864

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=97.83  E-value=1.4e-05  Score=88.36  Aligned_cols=55  Identities=24%  Similarity=0.364  Sum_probs=48.0

Q ss_pred             CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      -|+-|+|...++..+||++||++++++|||++..        ..|+..|..|++||++|++..
T Consensus         6 ~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~--------~~~~~~f~~i~~Ay~~L~~~~   60 (306)
T PRK10266          6 YYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE--------PDAEARFKEVAEAWEVLSDEQ   60 (306)
T ss_pred             hHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--------ccHHHHHHHHHHHHHHhhhHH
Confidence            4778899999999999999999999999999652        147889999999999998753

>PRK14282 chaperone protein DnaJ; Provisional

Probab=97.83  E-value=1.7e-05  Score=89.83  Aligned_cols=57  Identities=19%  Similarity=0.384  Sum_probs=49.4

Q ss_pred             CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      -|+-|+|...++..+||+|||++++++|||++...      ...|+..|..|++||++|++.+
T Consensus         6 ~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~------~~~a~~~f~~i~~Ay~vL~d~~   62 (369)
T PRK14282          6 YYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPEN------RKEAEQKFKEIQEAYEVLSDPQ   62 (369)
T ss_pred             hHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccc------hhHHHHHHHHHHHHHHHhcChh
Confidence            47789999999999999999999999999998631      1248889999999999999875

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=1.5e-05  Score=90.85  Aligned_cols=58  Identities=24%  Similarity=0.359  Sum_probs=51.3

Q ss_pred             CCCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508          848 ESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE  911 (914)
Q Consensus       848 ~~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~  911 (914)
                      .|-|..|+|..-.++.+||++|||++|.+||||++.   .   ..-|..+|.+|+.||++|.+.
T Consensus         8 ~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd---~---ieeat~~F~~i~aAYeVLSdp   65 (508)
T KOG0717|consen    8 RCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPD---R---IEEATQQFQLIQAAYEVLSDP   65 (508)
T ss_pred             hHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCc---c---HHHHHHHHHHHHHHHHHhcCh
Confidence            467888999999999999999999999999999863   2   235899999999999999875

>PRK10767 chaperone protein DnaJ; Provisional

Probab=97.82  E-value=1.5e-05  Score=90.20  Aligned_cols=56  Identities=25%  Similarity=0.420  Sum_probs=48.9

Q ss_pred             CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      -|+-|+|..-++..+||++||++++.+|||++...       ..|+..|..|++||++|.+..
T Consensus         6 ~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~-------~~a~~~f~~i~~Ay~~L~d~~   61 (371)
T PRK10767          6 YYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD-------KEAEEKFKEIKEAYEVLSDPQ   61 (371)
T ss_pred             hHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-------HHHHHHHHHHHHHHHHhcchh
Confidence            37789999999999999999999999999998632       137889999999999998765

>PRK14277 chaperone protein DnaJ; Provisional

Probab=97.81  E-value=1.7e-05  Score=90.38  Aligned_cols=57  Identities=23%  Similarity=0.336  Sum_probs=49.4

Q ss_pred             CCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          849 SGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       849 ~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      .-|.-|+|..-++..+||++||++++.+|||++...       ..|+..|..|++||++|.+.+
T Consensus         6 d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-------~~a~~~f~~i~~Ay~vL~d~~   62 (386)
T PRK14277          6 DYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGD-------KEAEQKFKEINEAYEILSDPQ   62 (386)
T ss_pred             CHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-------hHHHHHHHHHHHHHHHhCCHH
Confidence            347889999999999999999999999999998632       137789999999999999864

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=97.80  E-value=1.4e-05  Score=91.90  Aligned_cols=51  Identities=27%  Similarity=0.480  Sum_probs=45.3

Q ss_pred             ccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       851 Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      |+-|+|..-++..+||+||||+++++||||+.    +       ...|..|++||++|.+.+
T Consensus        31 Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~----~-------~e~F~~i~~AYevLsD~~   81 (421)
T PTZ00037         31 YEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG----D-------PEKFKEISRAYEVLSDPE   81 (421)
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCc----h-------HHHHHHHHHHHHHhccHH
Confidence            77789999999999999999999999999974    1       248999999999999865

>PRK14278 chaperone protein DnaJ; Provisional

Probab=97.80  E-value=1.9e-05  Score=89.64  Aligned_cols=55  Identities=22%  Similarity=0.336  Sum_probs=48.5

Q ss_pred             CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      -|.-|+|..-++..+||+|||++++++|||++..        .-|+..|..|++||++|.+.+
T Consensus         5 ~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~--------~~a~~~f~~i~~Ay~vL~d~~   59 (378)
T PRK14278          5 YYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD--------EEAQEKFKEISVAYEVLSDPE   59 (378)
T ss_pred             cceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc--------HHHHHHHHHHHHHHHHhchhh
Confidence            4778999999999999999999999999999862        137889999999999998864

>PRK14294 chaperone protein DnaJ; Provisional

Probab=97.80  E-value=1.7e-05  Score=89.67  Aligned_cols=56  Identities=25%  Similarity=0.388  Sum_probs=48.5

Q ss_pred             CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      -|+-|+|..-++..+||++||++++++|||+++..       ..|+..|..|++||++|++.+
T Consensus         6 ~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-------~~~~~~f~~~~~Ay~vL~d~~   61 (366)
T PRK14294          6 YYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGD-------KEAEELFKEAAEAYEVLSDPK   61 (366)
T ss_pred             hHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-------hHHHHHHHHHHHHHHHhccHH
Confidence            37788999999999999999999999999998632       136788999999999999864

>PRK14284 chaperone protein DnaJ; Provisional

Probab=97.79  E-value=1.9e-05  Score=90.02  Aligned_cols=55  Identities=27%  Similarity=0.440  Sum_probs=48.4

Q ss_pred             ccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       851 Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      |+-|+|..-+++.+||++||++++++|||+++..       ..|+..|..|++||++|.+.+
T Consensus         4 y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~-------~~a~~~f~~i~~Ay~vL~d~~   58 (391)
T PRK14284          4 YTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGD-------AEAEKRFKEVSEAYEVLSDAQ   58 (391)
T ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-------hHHHHHHHHHHHHHHHhcCHH
Confidence            6778999999999999999999999999998742       137888999999999999764

>PRK14281 chaperone protein DnaJ; Provisional

Probab=97.78  E-value=2e-05  Score=90.01  Aligned_cols=56  Identities=27%  Similarity=0.443  Sum_probs=48.6

Q ss_pred             CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      -|.-|+|..-++..+||++||++++++|||++...       ..|+..|..||+||++|.+..
T Consensus         5 ~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~-------~~a~~~f~~i~~Ay~vL~d~~   60 (397)
T PRK14281          5 YYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDN-------KEAEEHFKEVNEAYEVLSNDD   60 (397)
T ss_pred             hhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-------hHHHHHHHHHHHHHHHhhhhh
Confidence            36788999999999999999999999999998632       137789999999999999864

>PRK14276 chaperone protein DnaJ; Provisional

Probab=97.78  E-value=2e-05  Score=89.60  Aligned_cols=55  Identities=22%  Similarity=0.378  Sum_probs=48.2

Q ss_pred             CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      -|.-|+|..-++..+||++||++++++|||++...        -|+..|..|++||++|.+.+
T Consensus         6 ~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~--------~a~~~f~~i~~Ay~vL~d~~   60 (380)
T PRK14276          6 YYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEP--------GAEEKYKEVQEAYETLSDPQ   60 (380)
T ss_pred             HHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------CHHHHHHHHHHHHHHhcCHh
Confidence            47789999999999999999999999999998632        26678999999999999865

>PRK14283 chaperone protein DnaJ; Provisional

Probab=97.78  E-value=2.1e-05  Score=89.36  Aligned_cols=56  Identities=25%  Similarity=0.392  Sum_probs=49.1

Q ss_pred             CCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          849 SGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       849 ~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      .-|+-|+|..-++..+||++||++++++|||+++..        -|+..|..|++||++|.+.+
T Consensus         6 d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------~a~~~f~~i~~Ay~~Lsd~~   61 (378)
T PRK14283          6 DYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEE--------GAEEKFKEISEAYAVLSDDE   61 (378)
T ss_pred             ChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------cHHHHHHHHHHHHHHhchhH
Confidence            347889999999999999999999999999998631        37789999999999998865

>PRK14280 chaperone protein DnaJ; Provisional

Probab=97.77  E-value=2.1e-05  Score=89.23  Aligned_cols=55  Identities=22%  Similarity=0.410  Sum_probs=48.1

Q ss_pred             CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      -|+-|+|...++..+||++||++++.+|||++...        -|+..|..|++||++|.+.+
T Consensus         6 ~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~--------~a~~~f~~i~~Ay~vL~d~~   60 (376)
T PRK14280          6 YYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEE--------GADEKFKEISEAYEVLSDDQ   60 (376)
T ss_pred             hHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------cHHHHHHHHHHHHHHhccHh
Confidence            37789999999999999999999999999998632        26778999999999998864

>PRK14287 chaperone protein DnaJ; Provisional

Probab=97.76  E-value=2.2e-05  Score=89.01  Aligned_cols=55  Identities=27%  Similarity=0.387  Sum_probs=47.9

Q ss_pred             CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      -|+-|+|..-++..+||+|||++++.+|||++...        -|+..|..||+||++|.+.+
T Consensus         6 ~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~--------~~~~~f~~i~~Ay~~L~d~~   60 (371)
T PRK14287          6 YYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAP--------DAEDKFKEVKEAYDTLSDPQ   60 (371)
T ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh--------hHHHHHHHHHHHHHHhCcHh
Confidence            36789999999999999999999999999997521        26778999999999998865

>PRK14297 chaperone protein DnaJ; Provisional

Probab=97.76  E-value=2.2e-05  Score=89.18  Aligned_cols=56  Identities=25%  Similarity=0.402  Sum_probs=48.9

Q ss_pred             CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      -|+-|+|..-++..+||++||++++.+|||++...       ..|+..|..||+||++|.+.+
T Consensus         6 ~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-------~~a~~~f~~i~~Ay~vL~d~~   61 (380)
T PRK14297          6 YYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGN-------KEAEEKFKEINEAYQVLSDPQ   61 (380)
T ss_pred             hHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-------HHHHHHHHHHHHHHHHhcCHh
Confidence            47788999999999999999999999999998632       147889999999999999864

>PRK14291 chaperone protein DnaJ; Provisional

Probab=97.74  E-value=2.3e-05  Score=89.17  Aligned_cols=55  Identities=25%  Similarity=0.382  Sum_probs=48.0

Q ss_pred             CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      -|.-|+|...++..+||++||++++++|||+++..        -|+..|..|++||++|++.+
T Consensus         5 ~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~--------~~~~~f~~i~~Ay~vLsd~~   59 (382)
T PRK14291          5 YYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNP--------EAEEKFKEINEAYQVLSDPE   59 (382)
T ss_pred             HHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--------cHHHHHHHHHHHHHHhcCHH
Confidence            36789999999999999999999999999998631        36678999999999999864

>PRK14301 chaperone protein DnaJ; Provisional

Probab=97.72  E-value=2.9e-05  Score=88.13  Aligned_cols=56  Identities=27%  Similarity=0.398  Sum_probs=48.2

Q ss_pred             CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      -|+-|+|..-++..+||++||++++.+||||++..       .-|+..|..|++||++|++..
T Consensus         6 ~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-------~~a~~~f~~i~~Ay~vL~d~~   61 (373)
T PRK14301          6 YYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN-------PEAEQKFKEAAEAYEVLRDAE   61 (373)
T ss_pred             hHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCC-------hHHHHHHHHHHHHHHHhcchh
Confidence            36778999999999999999999999999998642       136778999999999999864

>PRK14290 chaperone protein DnaJ; Provisional

Probab=97.70  E-value=3.6e-05  Score=87.03  Aligned_cols=58  Identities=21%  Similarity=0.307  Sum_probs=50.1

Q ss_pred             CCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          849 SGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       849 ~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      .-|+-|+|..-++..+||++||++++++|||+++..      ...|+..|..|++||++|.+..
T Consensus         4 d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~------~~~a~~~f~~i~~Ay~~L~d~~   61 (365)
T PRK14290          4 DYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGN------KAEAEEKFKEISEAYEVLSDPQ   61 (365)
T ss_pred             ChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc------hhHHHHHHHHHHHHHHHhcChh
Confidence            347889999999999999999999999999997631      1248889999999999999864

>PRK14298 chaperone protein DnaJ; Provisional

Probab=97.69  E-value=3e-05  Score=88.14  Aligned_cols=55  Identities=29%  Similarity=0.453  Sum_probs=48.0

Q ss_pred             CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      -|+-|+|..-++..+||++||++++++|||+++..        -|+..|..||+||++|.+.+
T Consensus         7 ~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------~~~~~f~~i~~Ay~vL~d~~   61 (377)
T PRK14298          7 YYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEP--------DAEEKFKEISEAYAVLSDAE   61 (377)
T ss_pred             HHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCCh--------hHHHHHHHHHHHHHHhcchH
Confidence            37789999999999999999999999999998521        26778999999999999875

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=5e-05  Score=80.51  Aligned_cols=59  Identities=27%  Similarity=0.430  Sum_probs=52.9

Q ss_pred             CCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          849 SGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       849 ~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      +-|.-|||..-+++..|+++|+|+.|.+|||+++     .+++.-|...|+.|+.+|.+|.+++
T Consensus        15 d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~-----eed~~ea~~kFq~l~k~y~iLsDee   73 (264)
T KOG0719|consen   15 DLYEVLGVERDATDKEIRKAYHKLALRLHPDKNH-----EEDKVEATEKFQQLQKAYQILSDEE   73 (264)
T ss_pred             CHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcch-----hhhHHHHHHHHHHHHHHHHHhhHHH
Confidence            5577889999999999999999999999999986     3677789999999999999998865

>PRK14293 chaperone protein DnaJ; Provisional

Probab=97.61  E-value=5.6e-05  Score=85.75  Aligned_cols=55  Identities=20%  Similarity=0.328  Sum_probs=48.2

Q ss_pred             CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      -|+-|+|...++..+||++||++++.+|||+++..        -|+..|..|++||++|+++.
T Consensus         5 ~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------~a~~~f~~i~~Ay~vL~~~~   59 (374)
T PRK14293          5 YYEILGVSRDADKDELKRAYRRLARKYHPDVNKEP--------GAEDRFKEINRAYEVLSDPE   59 (374)
T ss_pred             hhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--------CHHHHHHHHHHHHHHHhchH
Confidence            47889999999999999999999999999998632        26678999999999999864

>PRK14300 chaperone protein DnaJ; Provisional

Probab=97.60  E-value=5e-05  Score=86.11  Aligned_cols=56  Identities=29%  Similarity=0.415  Sum_probs=48.6

Q ss_pred             CCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          849 SGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       849 ~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      .-|+-|+|..-++..+||++||++++.+|||++...        .|+..|..|++||++|.+..
T Consensus         4 ~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~--------~~~~~f~~i~~Ay~~L~d~~   59 (372)
T PRK14300          4 DYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAK--------DAEKKFKEINAAYDVLKDEQ   59 (372)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------CHHHHHHHHHHHHHHhhhHh
Confidence            447889999999999999999999999999997621        26678999999999999864

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=5.8e-05  Score=81.53  Aligned_cols=54  Identities=28%  Similarity=0.412  Sum_probs=45.9

Q ss_pred             ccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE  911 (914)
Q Consensus       851 Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~  911 (914)
                      |.-|||...+|..+|||+||++++++||||++..   +    -+-..|++||.||++|.+.
T Consensus        34 YdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~---P----~~~dkf~eIN~Ay~ILsD~   87 (279)
T KOG0716|consen   34 YDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDN---P----EATDKFKEINTAYAILSDP   87 (279)
T ss_pred             HHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCC---c----hhHHHHHHHHHHHHHhcCh
Confidence            5567788899999999999999999999999753   2    2556899999999999875

>PRK14292 chaperone protein DnaJ; Provisional

Probab=97.58  E-value=5.8e-05  Score=85.47  Aligned_cols=54  Identities=28%  Similarity=0.489  Sum_probs=47.5

Q ss_pred             ccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       851 Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      |+-|+|...++..+||++||++++++|||++...        .|+..|..||+||++|.+..
T Consensus         5 y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~--------~a~~~~~~i~~Ay~vL~d~~   58 (371)
T PRK14292          5 YELLGVSRTASADEIKSAYRKLALKYHPDRNKEK--------GAAEKFAQINEAYAVLSDAE   58 (371)
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCh--------hHHHHHHHHHHHHHHhcchh
Confidence            6778999999999999999999999999998631        36778999999999999864

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=97.55  E-value=0.00012  Score=74.93  Aligned_cols=59  Identities=15%  Similarity=0.287  Sum_probs=48.3

Q ss_pred             cccccccc--ccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508          851 WQPVSLTD--LITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE  911 (914)
Q Consensus       851 Wk~v~l~d--L~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~  911 (914)
                      |.-+||..  -++..+|+++|++++..+|||+....  +...+.+|...|..||+||++|++.
T Consensus         4 f~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~--~~~~~~~a~~~s~~iN~AY~~L~dp   64 (171)
T PRK05014          4 FTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANA--SERERLLAVQQAATINDAYQTLKHP   64 (171)
T ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCC--cHHHHHHHHHHHHHHHHHHHHHCCh
Confidence            34466666  36789999999999999999998753  4445668999999999999999875

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=0.00011  Score=84.04  Aligned_cols=73  Identities=25%  Similarity=0.320  Sum_probs=59.6

Q ss_pred             chHHHHHhhhccccCCCCCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508          832 GNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE  911 (914)
Q Consensus       832 ~niRaLLstL~~VLW~~~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~  911 (914)
                      .|.+.+.--|-..+=.-.-|--|||-.-++.++|||.|||....|||||+...        .|+.+|..|+.||+++.+.
T Consensus       219 ~n~t~~adrl~re~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~--------~A~Eafk~Lq~Afevig~~  290 (490)
T KOG0720|consen  219 TNATSFADRLSRELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIP--------RAEEAFKKLQVAFEVIGDS  290 (490)
T ss_pred             cchhhHHHhhhhhhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCCh--------hHHHHHHHHHHHHHHhcch
Confidence            56666666666655333467889999999999999999999999999999842        6899999999999998764


Q ss_pred             C
Q 002508          912 E  912 (914)
Q Consensus       912 e  912 (914)
                      +
T Consensus       291 ~  291 (490)
T KOG0720|consen  291 V  291 (490)
T ss_pred             h
Confidence            3

>PRK14289 chaperone protein DnaJ; Provisional

Probab=97.48  E-value=9.7e-05  Score=84.14  Aligned_cols=57  Identities=26%  Similarity=0.416  Sum_probs=48.9

Q ss_pred             CCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          849 SGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       849 ~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      .-|.-|+|..-++..+||++||++++.+|||+++..       ..|+..|..|++||++|.+..
T Consensus         6 ~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~-------~~a~~~f~~i~~Ay~~L~d~~   62 (386)
T PRK14289          6 DYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGD-------KEAEEKFKEAAEAYDVLSDPD   62 (386)
T ss_pred             CHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-------hHHHHHHHHHHHHHHHhcCHH
Confidence            347788999999999999999999999999998632       137889999999999998763

>PHA03102 Small T antigen; Reviewed

Probab=97.46  E-value=0.00013  Score=73.54  Aligned_cols=47  Identities=26%  Similarity=0.427  Sum_probs=38.2

Q ss_pred             ccccccc--chHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508          854 VSLTDLI--TAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE  911 (914)
Q Consensus       854 v~l~dL~--~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~  911 (914)
                      |||..-+  +..+||++||++++.+||||..    +       ...|..||+||++|.+.
T Consensus        11 LGl~~~A~~s~~eIKkAYr~la~~~HPDkgg----~-------~e~~k~in~Ay~~L~d~   59 (153)
T PHA03102         11 LGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG----D-------EEKMKELNTLYKKFRES   59 (153)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc----h-------hHHHHHHHHHHHHHhhH
Confidence            4555556  8899999999999999999953    2       23788999999999875

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.46  E-value=0.0057  Score=73.62  Aligned_cols=12  Identities=33%  Similarity=0.664  Sum_probs=7.1

Q ss_pred             HHHhccCCchHH
Q 002508          824 KRWAAGKEGNIR  835 (914)
Q Consensus       824 ~~W~~GKe~niR  835 (914)
                      --|..-|+++|-
T Consensus       820 y~wrakke~dLs  831 (1118)
T KOG1029|consen  820 YPWRAKKENDLS  831 (1118)
T ss_pred             cccccccccccc
Confidence            457766665553

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=97.42  E-value=0.00013  Score=73.14  Aligned_cols=57  Identities=26%  Similarity=0.440  Sum_probs=48.3

Q ss_pred             CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      -|.-|+|...++..+|+++||++++.+|||++....   .   .|+..|..|++||+++.+..
T Consensus         8 ~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~---~---~a~~~f~~i~~Ay~vLsd~~   64 (237)
T COG2214           8 YYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDP---K---VAEEKFKEINEAYEILSDPE   64 (237)
T ss_pred             HHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch---h---HHHHHHHHHHHHHHHhhCHH
Confidence            355677888888999999999999999999998531   1   68899999999999998754

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=97.40  E-value=0.00024  Score=73.18  Aligned_cols=59  Identities=20%  Similarity=0.324  Sum_probs=48.2

Q ss_pred             cccccccc--ccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508          851 WQPVSLTD--LITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE  911 (914)
Q Consensus       851 Wk~v~l~d--L~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~  911 (914)
                      |.-+||..  -++..+|+++|+++...+|||+..+.  +...+.+|...+..||+||.+|++.
T Consensus         9 f~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~--~~~e~~~a~~~s~~iN~AY~tL~~p   69 (176)
T PRK03578          9 FSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAA--GDAEKRVAMQWATRANEAYQTLRDP   69 (176)
T ss_pred             HHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--CHHHHHHHHHHHHHHHHHHHHhCCh
Confidence            44556665  46789999999999999999999754  4445668888999999999999875

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=97.37  E-value=0.00028  Score=72.49  Aligned_cols=59  Identities=19%  Similarity=0.292  Sum_probs=48.0

Q ss_pred             cccccccc--ccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508          851 WQPVSLTD--LITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE  911 (914)
Q Consensus       851 Wk~v~l~d--L~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~  911 (914)
                      |.-++|..  -++..+|+++||++...+|||+....  +...+.+|...|..||+||.+|++.
T Consensus         7 F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~--~~~e~~~a~~~s~~IN~AY~~L~~p   67 (173)
T PRK00294          7 FALFDLQPSFRLDLDQLATRYRELAREVHPDRFADA--PEREQRLALERSASLNEAYQTLKSP   67 (173)
T ss_pred             hhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--cHHHHHHHHHHHHHHHHHHHHhCCh
Confidence            44455655  47789999999999999999998753  3344568888999999999999875

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=97.35  E-value=0.00015  Score=89.13  Aligned_cols=56  Identities=14%  Similarity=0.101  Sum_probs=49.1

Q ss_pred             CCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          849 SGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       849 ~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      .-|.-|||...++..+||++|||+++.+||||++.   +     .|...|..|++||++|.+.+
T Consensus       574 dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~---~-----~A~ekFq~I~EAYeVLSDp~  629 (1136)
T PTZ00341        574 LFYDILGVGVNADMKEISERYFKLAENYYPPKRSG---N-----EGFHKFKKINEAYQILGDID  629 (1136)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---c-----hHHHHHHHHHHHHHHhCCHH
Confidence            34778999999999999999999999999999863   1     26678999999999999875

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=97.34  E-value=0.00026  Score=72.24  Aligned_cols=57  Identities=25%  Similarity=0.326  Sum_probs=46.2

Q ss_pred             ccccccccc--cchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508          851 WQPVSLTDL--ITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE  911 (914)
Q Consensus       851 Wk~v~l~dL--~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~  911 (914)
                      |.-+||..-  ++..+|+++|+++.+.+||||...    ...+..+-..|..||+||++|++.
T Consensus         5 f~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~----~~~k~~~~~~s~~in~AY~~L~dp   63 (166)
T PRK01356          5 FQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKT----LQEKEQNLIIASELNNAYSTLKDA   63 (166)
T ss_pred             HHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHHHHHHHhCCH
Confidence            455677764  778999999999999999999863    234556777899999999999874

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=97.27  E-value=0.00025  Score=68.53  Aligned_cols=49  Identities=14%  Similarity=0.262  Sum_probs=40.8

Q ss_pred             CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhh
Q 002508          850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFN  909 (914)
Q Consensus       850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~  909 (914)
                      -|+-|+|..-++..+|+++||++++.+|||+.   | +.       .+|..||+||++|.
T Consensus        67 Ay~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---G-s~-------~~~~kIneAyevL~  115 (116)
T PTZ00100         67 AYKILNISPTASKERIREAHKQLMLRNHPDNG---G-ST-------YIASKVNEAKDLLL  115 (116)
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---C-CH-------HHHHHHHHHHHHHh
Confidence            35668888889999999999999999999983   3 22       25678999999985

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=97.23  E-value=0.00044  Score=69.94  Aligned_cols=50  Identities=20%  Similarity=0.297  Sum_probs=42.4

Q ss_pred             cchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508          860 ITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE  911 (914)
Q Consensus       860 ~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~  911 (914)
                      ++..+|+++|+++...+|||+..+.+  ...+.+|...|..||+||.+|++.
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~--~~~~~~a~~~s~~iN~AY~~L~~p   52 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGS--AQEQLAAVQQSTTLNQAYQTLKDP   52 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCC--hhhhHHHHHHHHHHHHHHHHhCCh
Confidence            57889999999999999999987543  334467889999999999999875

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.18  E-value=0.00044  Score=72.89  Aligned_cols=55  Identities=22%  Similarity=0.479  Sum_probs=45.1

Q ss_pred             ccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       851 Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      +.-|||..-.+..+|||+||++++++||||++..+.       -+.-|+.|+.||..+.++.
T Consensus       102 yEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~-------~e~~~~~I~KAY~aLTD~~  156 (230)
T KOG0721|consen  102 YEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEG-------DEEFFEAIAKAYQALTDKK  156 (230)
T ss_pred             HHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcch-------hHHHHHHHHHHHHHhcchh
Confidence            455889999999999999999999999999975222       2457889999998887754

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.14  E-value=0.00043  Score=76.30  Aligned_cols=62  Identities=26%  Similarity=0.378  Sum_probs=55.1

Q ss_pred             cccCCCCCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          843 YVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       843 ~VLW~~~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      .++|...-|+-||+..-.+..+||++|++++..+|||.+...        .|...|..|.+||++|.+++
T Consensus        38 ~~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~--------~a~~kF~eI~~AYEiLsd~e   99 (288)
T KOG0715|consen   38 RIISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK--------EASKKFKEISEAYEILSDEE   99 (288)
T ss_pred             ccCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc--------chhhHHHHHHHHHHHhcCHH
Confidence            355766678899999999999999999999999999999753        68999999999999999875

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=96.93  E-value=0.00083  Score=81.33  Aligned_cols=54  Identities=20%  Similarity=0.336  Sum_probs=46.9

Q ss_pred             ccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       851 Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      |.-|||...++..+||++||++++++||||+..        ..|...|..|++||++|.+..
T Consensus         5 YeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~--------~eAeekFqeINEAYEVLSDP~   58 (871)
T TIGR03835         5 YEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA--------PDAASIFAEINEANDVLSNPK   58 (871)
T ss_pred             hHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--------hhHHHHHHHHHHHHHHhCCHH
Confidence            677899999999999999999999999999863        136778999999999998753

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.002  Score=73.44  Aligned_cols=73  Identities=27%  Similarity=0.367  Sum_probs=59.1

Q ss_pred             chHHHHHhhhcccc----CCCCCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHH
Q 002508          832 GNIRALLATMQYVL----WPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNK  907 (914)
Q Consensus       832 ~niRaLLstL~~VL----W~~~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~  907 (914)
                      -+||.+|--.+.-|    | -.-|+-||+..+.+...||++|||+.|.+|||++...      ++-|+..|+.+-+||.+
T Consensus       354 ~e~r~~l~~A~~aLkkSkR-kd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ags------q~eaE~kFkevgeAy~i  426 (486)
T KOG0550|consen  354 CEIRRTLREAQLALKKSKR-KDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGS------QKEAEAKFKEVGEAYTI  426 (486)
T ss_pred             cchHHHHHHHHHHHHHhhh-hhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcch------hHHHHHHHHHHHHHHHH
Confidence            45666666554444    3 2236789999999999999999999999999999742      56899999999999999


Q ss_pred             hhhc
Q 002508          908 FNSE  911 (914)
Q Consensus       908 F~~~  911 (914)
                      +.+.
T Consensus       427 l~d~  430 (486)
T KOG0550|consen  427 LSDP  430 (486)
T ss_pred             hcCH
Confidence            9874

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=96.71  E-value=0.002  Score=73.74  Aligned_cols=80  Identities=18%  Similarity=0.317  Sum_probs=61.4

Q ss_pred             HHHHhccCCchHHHHHhhhc------cccCCCCCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHH
Q 002508          823 IKRWAAGKEGNIRALLATMQ------YVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEK  896 (914)
Q Consensus       823 i~~W~~GKe~niRaLLstL~------~VLW~~~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~  896 (914)
                      |-.|-     -|=.||+.+.      .=+|+  -|.-|||..-....+||++||++.+++||||++.  .+++.+..-+.
T Consensus        74 ivgWl-----~i~~L~~~I~~~k~~~~~~fD--PyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~--mvn~~rse~Ee  144 (610)
T COG5407          74 IVGWL-----VISYLISNIRTLKIEYRRGFD--PYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPP--MVNELRSEYEE  144 (610)
T ss_pred             HHHHH-----HHHHHHHHHHHHHHHHHcCCC--hHHhhcccCCCcHHHHHHHHHhheeecChhhcCC--CChhHHHHHHH
Confidence            66787     2334444443      33452  3455788888888999999999999999999985  46678888999


Q ss_pred             HHHHHHHHHHHhhhc
Q 002508          897 VFDLLKEAWNKFNSE  911 (914)
Q Consensus       897 vF~~LneAwe~F~~~  911 (914)
                      .+..|+.||..+.++
T Consensus       145 ~y~~ItkAY~~lTd~  159 (610)
T COG5407         145 KYKTITKAYGLLTDK  159 (610)
T ss_pred             HHHHHHHHHHhhhhH
Confidence            999999999988764

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=96.65  E-value=0.0055  Score=68.77  Aligned_cols=108  Identities=24%  Similarity=0.219  Sum_probs=78.9

Q ss_pred             hHHHHHHHHHHHHhhHhHHHHHHHHhcc---CC--chHHHHHhhhc---cccCCCCCccccccccccchHHHHHHHHhhh
Q 002508          802 DLQAQRDQAERHRIAETLDVEIKRWAAG---KE--GNIRALLATMQ---YVLWPESGWQPVSLTDLITAAAVKKCYRKAT  873 (914)
Q Consensus       802 ~~~~~~e~~er~~l~d~id~ki~~W~~G---Ke--~niRaLLstL~---~VLW~~~~Wk~v~l~dL~~~~~VKkaYrKA~  873 (914)
                      |.++--+-++-..+-+.+|.-|..+..-   .+  .-+|.-|-.-+   ...--..-|+-||+-.-+.-.+|-|+|||+.
T Consensus       340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlA  419 (504)
T KOG0624|consen  340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYKILGVKRNASKQEITKAYRKLA  419 (504)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHHHhhhcccccHHHHHHHHHHHH
Confidence            4555556666677777777766665521   11  22333333322   2223355688999999999999999999999


Q ss_pred             hhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcCC
Q 002508          874 LCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEEL  913 (914)
Q Consensus       874 l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e~  913 (914)
                      +++|||--+    +.+.+..|++.|+-|-.|-++|.++|+
T Consensus       420 qkWHPDNFq----dEeEKKkAEKKFIDIAAAKEVLsd~Ek  455 (504)
T KOG0624|consen  420 QKWHPDNFQ----DEEEKKKAEKKFIDIAAAKEVLSDPEK  455 (504)
T ss_pred             HhcCCcccc----CHHHHHHHHHhhhhHHHHHHhhcCHHH
Confidence            999999987    446788999999999999999999885

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]

Probab=96.63  E-value=0.034  Score=67.13  Aligned_cols=21  Identities=24%  Similarity=0.406  Sum_probs=12.9

Q ss_pred             HHHHhc-cC----CchHHHHHhhhcc
Q 002508          823 IKRWAA-GK----EGNIRALLATMQY  843 (914)
Q Consensus       823 i~~W~~-GK----e~niRaLLstL~~  843 (914)
                      +.+|.. ++    +.--|+.||.+.+
T Consensus      1102 Y~~WKskN~~~~~~~~~RAp~sv~~~ 1127 (1259)
T KOG0163|consen 1102 YHAWKSKNRKRTTMPENRAPLSVMEA 1127 (1259)
T ss_pred             HHHHHhcCCccCCCCccccchhHHHH
Confidence            578984 21    1223899888854

>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]

Probab=96.57  E-value=0.056  Score=64.68  Aligned_cols=22  Identities=23%  Similarity=0.289  Sum_probs=9.7

Q ss_pred             HHhhHhHHHHHHHHhccCCchH
Q 002508          813 HRIAETLDVEIKRWAAGKEGNI  834 (914)
Q Consensus       813 ~~l~d~id~ki~~W~~GKe~ni  834 (914)
                      +.+.+.|-..+--|..|.++-|
T Consensus       650 ~~~d~alm~ql~pl~hgn~ns~  671 (811)
T KOG4364|consen  650 QICDRALMVQLFPLSHGNENSI  671 (811)
T ss_pred             HHHHHHHHHHHhhhhcccccch
Confidence            3334444444444554444333

>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]

Probab=96.48  E-value=0.069  Score=63.95  Aligned_cols=11  Identities=27%  Similarity=0.456  Sum_probs=5.7

Q ss_pred             cccccccccch
Q 002508          852 QPVSLTDLITA  862 (914)
Q Consensus       852 k~v~l~dL~~~  862 (914)
                      ...++++||+.
T Consensus       667 n~ns~~~ii~E  677 (811)
T KOG4364|consen  667 NENSINDIIDE  677 (811)
T ss_pred             cccchHHHHHH
Confidence            34555555553

>PHA02624 large T antigen; Provisional

Probab=96.37  E-value=0.0029  Score=75.74  Aligned_cols=49  Identities=22%  Similarity=0.354  Sum_probs=39.3

Q ss_pred             ccccccccc--chHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508          852 QPVSLTDLI--TAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE  911 (914)
Q Consensus       852 k~v~l~dL~--~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~  911 (914)
                      +-|||...+  +..+||++||++++.+||||.   | +       ...|..||.||++|.+.
T Consensus        15 elLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg---G-d-------eekfk~Ln~AYevL~d~   65 (647)
T PHA02624         15 DLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG---G-D-------EEKMKRLNSLYKKLQEG   65 (647)
T ss_pred             HHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---C-c-------HHHHHHHHHHHHHHhcH
Confidence            445666656  889999999999999999994   2 2       24689999999999763

>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs)

Probab=96.14  E-value=0.77  Score=47.60  Aligned_cols=19  Identities=37%  Similarity=0.552  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 002508          494 QDAQERLDREMQQREKGEE  512 (914)
Q Consensus       494 ~e~qerl~rE~~e~e~~e~  512 (914)
                      .-+..|+.|++.+++++++
T Consensus        28 LAEkRRlAReQkErEE~ER   46 (171)
T PF05672_consen   28 LAEKRRLAREQKEREEQER   46 (171)
T ss_pred             HHHHHHHHHHHhhhHHHHH
Confidence            3334455555555444433

The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=95.84  E-value=0.015  Score=60.05  Aligned_cols=56  Identities=16%  Similarity=0.232  Sum_probs=47.0

Q ss_pred             ccccc--ccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508          854 VSLTD--LITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE  911 (914)
Q Consensus       854 v~l~d--L~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~  911 (914)
                      +||..  -++...+++.|+.+...+|||+..+.  +...+.+|...=..||+||.+|++.
T Consensus         8 f~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~--~~~eq~~a~~~ss~iN~AY~tLkdP   65 (173)
T PRK01773          8 FDLPVDFQLDNALLSERYLALQKSLHPDNFANS--SAQEQRLAMQKSAEVNDALQILKDP   65 (173)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCC--CHHHHHHHHHHHHHHHHHHHHHCCh
Confidence            44444  47899999999999999999999865  4566678888999999999999874

>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]

Probab=95.80  E-value=7.8  Score=48.41  Aligned_cols=19  Identities=11%  Similarity=0.179  Sum_probs=9.6

Q ss_pred             cccccccccccCcccCCCC
Q 002508          336 AEDVWLTVSEIPLFTQPTS  354 (914)
Q Consensus       336 ~~dv~ltvS~ipl~t~Pt~  354 (914)
                      -+-||.+|||--|.-.-||
T Consensus       441 vSqiY~sIs~~~l~~La~F  459 (988)
T KOG2072|consen  441 VSQIYESISFERLYKLAPF  459 (988)
T ss_pred             HHHHHHHHhHHHHHHHHhh
Confidence            3445666665555443333

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=95.65  E-value=0.0056  Score=66.07  Aligned_cols=70  Identities=19%  Similarity=0.310  Sum_probs=54.2

Q ss_pred             HHHHhhhccccCCC--C----CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHh
Q 002508          835 RALLATMQYVLWPE--S----GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKF  908 (914)
Q Consensus       835 RaLLstL~~VLW~~--~----~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F  908 (914)
                      -.||-+|-.+|-++  |    -|.-||++.-..-.+|.++||++.+.+|||++...    +    +...|..|..||+++
T Consensus        14 ~~Llp~l~vgl~egLYCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~----e----~k~~F~~iAtayeil   85 (329)
T KOG0722|consen   14 ILLLPSLFVGLSEGLYCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDP----E----SKKLFVKIATAYEIL   85 (329)
T ss_pred             HHHHHHHHHhhhhhhcccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCc----h----hhhhhhhhhcccccc
Confidence            44555554444432  2    36778898888889999999999999999999842    2    337899999999999


Q ss_pred             hhcC
Q 002508          909 NSEE  912 (914)
Q Consensus       909 ~~~e  912 (914)
                      ++.+
T Consensus        86 kd~e   89 (329)
T KOG0722|consen   86 KDNE   89 (329)
T ss_pred             cchh
Confidence            8865

>KOG2891 consensus Surface glycoprotein [General function prediction only]

Probab=95.55  E-value=2.3  Score=47.04  Aligned_cols=10  Identities=30%  Similarity=0.301  Sum_probs=4.0

Q ss_pred             ccCcccCCCC
Q 002508          345 EIPLFTQPTS  354 (914)
Q Consensus       345 ~ipl~t~Pt~  354 (914)
                      .|-+..||.+
T Consensus       187 ~ir~vdipic  196 (445)
T KOG2891|consen  187 EIRNVDIPIC  196 (445)
T ss_pred             cceecCCccc
Confidence            3334444433

>PRK07735 NADH dehydrogenase subunit C; Validated

Probab=95.14  E-value=1.1  Score=51.87  Aligned_cols=18  Identities=33%  Similarity=0.418  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 002508          649 QRAERAAVQRAASEARER  666 (914)
Q Consensus       649 ~~aEr~A~era~~Ear~r  666 (914)
                      .++..+++.++++.++.+
T Consensus       205 akaaa~akAkaaalak~~  222 (430)
T PRK07735        205 AKAAAAAKAKAAALAKQK  222 (430)
T ss_pred             HHhhHHHHHHHHHHHHHh
Confidence            344444555555555544

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=95.04  E-value=0.014  Score=61.60  Aligned_cols=53  Identities=30%  Similarity=0.457  Sum_probs=40.8

Q ss_pred             ccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508          853 PVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE  911 (914)
Q Consensus       853 ~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~  911 (914)
                      -|+|..-++..+|+++|+++++.+||||+..     . +..|+..|..|++||+++.+.
T Consensus         8 ~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~-----~-~~~~~~~~~~~~ea~~~ls~~   60 (306)
T KOG0714|consen    8 ILGIARSASEEDIKKAYRKLALKYHPDKNPS-----P-KEVAEAKFKEIAEAYEVLSDP   60 (306)
T ss_pred             HhCccccccHHHHHHHHHHHHHhhCCCCCCC-----c-hhhHHHHHhhhhccccccCCH
Confidence            3455544555699999999999999999653     2 446666999999999988754

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=94.98  E-value=0.023  Score=64.28  Aligned_cols=32  Identities=25%  Similarity=0.477  Sum_probs=29.7

Q ss_pred             ccccccccccchHHHHHHHHhhhhhcCCCccc
Q 002508          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQ  882 (914)
Q Consensus       851 Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~  882 (914)
                      |+-|+|..-++..+||++||++++.+|||++.
T Consensus         3 y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~   34 (354)
T TIGR02349         3 YEILGVSKDASEEEIKKAYRKLAKKYHPDRNK   34 (354)
T ss_pred             HHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
Confidence            66788999999999999999999999999986

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins

Probab=94.92  E-value=1.9  Score=51.34  Aligned_cols=12  Identities=17%  Similarity=0.291  Sum_probs=6.3

Q ss_pred             hHhHHHHHHHHh
Q 002508          816 AETLDVEIKRWA  827 (914)
Q Consensus       816 ~d~id~ki~~W~  827 (914)
                      .|.-..+|..|+
T Consensus       425 id~~tLev~kes  436 (489)
T PF05262_consen  425 IDPETLEVKKES  436 (489)
T ss_pred             cCcccceeeeec
Confidence            344455555555

>PRK07735 NADH dehydrogenase subunit C; Validated

Probab=94.91  E-value=2.5  Score=49.11  Aligned_cols=9  Identities=11%  Similarity=0.350  Sum_probs=4.4

Q ss_pred             cchhhhhcc
Q 002508          750 DDLSSIFGA  758 (914)
Q Consensus       750 dd~~s~fg~  758 (914)
                      +.|...||+
T Consensus       283 ~~L~e~fg~  291 (430)
T PRK07735        283 EVIKEKLGE  291 (430)
T ss_pred             HHHHHHhhh
Confidence            345555554

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]

Probab=94.45  E-value=0.7  Score=56.47  Aligned_cols=10  Identities=40%  Similarity=0.674  Sum_probs=7.7

Q ss_pred             hhcCCCcccc
Q 002508          874 LCIHPDKVQQ  883 (914)
Q Consensus       874 l~vHPDKl~~  883 (914)
                      +.+||||-+.
T Consensus      1185 m~l~~~kpP~ 1194 (1259)
T KOG0163|consen 1185 MELHPDKPPI 1194 (1259)
T ss_pred             heecCCCCCe
Confidence            5589999765

>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised

Probab=94.39  E-value=11  Score=42.18  Aligned_cols=9  Identities=33%  Similarity=0.353  Sum_probs=4.1

Q ss_pred             CCCCchhhh
Q 002508          433 VPSPEDVES  441 (914)
Q Consensus       433 ~~~~~~~e~  441 (914)
                      +|++...|-
T Consensus        28 ~FDP~aLER   36 (276)
T PF12037_consen   28 GFDPEALER   36 (276)
T ss_pred             CCCcHHHHH
Confidence            345554444

This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=93.91  E-value=0.89  Score=55.92  Aligned_cols=13  Identities=15%  Similarity=0.355  Sum_probs=9.1

Q ss_pred             cCCchHHHHHhhh
Q 002508          829 GKEGNIRALLATM  841 (914)
Q Consensus       829 GKe~niRaLLstL  841 (914)
                      -...|||..+|-+
T Consensus       468 ~~~~~lRSPIcCi  480 (1064)
T KOG1144|consen  468 ESTENLRSPICCI  480 (1064)
T ss_pred             ccchhcCCceEEE
Confidence            3456888888765

>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]

Probab=93.79  E-value=1.1  Score=53.29  Aligned_cols=6  Identities=50%  Similarity=1.498  Sum_probs=3.0

Q ss_pred             HHhccC
Q 002508          825 RWAAGK  830 (914)
Q Consensus       825 ~W~~GK  830 (914)
                      .|..|-
T Consensus       865 rWqGGe  870 (940)
T KOG4661|consen  865 RWQGGE  870 (940)
T ss_pred             cccCCc
Confidence            466444

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=93.39  E-value=0.092  Score=65.55  Aligned_cols=40  Identities=28%  Similarity=0.518  Sum_probs=35.0

Q ss_pred             hHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508          862 AAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE  911 (914)
Q Consensus       862 ~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~  911 (914)
                      +.+|+++|+|+..++||||++-          ....|..+|+||+.+...
T Consensus      1299 ~~KirrqY~kLA~kYHPDKNPE----------GRemFe~VnKAYE~L~~~ 1338 (2235)
T KOG1789|consen 1299 PAKIRRQYYKLAAKYHPDKNPE----------GREMFERVNKAYELLSSE 1338 (2235)
T ss_pred             HHHHHHHHHHHHHHhCCCCCch----------HHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999983          346899999999998754

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=92.33  E-value=1  Score=55.33  Aligned_cols=10  Identities=20%  Similarity=0.338  Sum_probs=6.5

Q ss_pred             chHHHHHhhh
Q 002508          832 GNIRALLATM  841 (914)
Q Consensus       832 ~niRaLLstL  841 (914)
                      .|||.--|+|
T Consensus       554 tnlRsrgssl  563 (1064)
T KOG1144|consen  554 TNLRSRGSSL  563 (1064)
T ss_pred             hhhhhccccc
Confidence            5777665555

>KOG2891 consensus Surface glycoprotein [General function prediction only]

Probab=92.32  E-value=15  Score=40.96  Aligned_cols=8  Identities=13%  Similarity=0.405  Sum_probs=4.5

Q ss_pred             cccccccc
Q 002508          335 SAEDVWLT  342 (914)
Q Consensus       335 ~~~dv~lt  342 (914)
                      ..|.|||.
T Consensus       148 rpdti~la  155 (445)
T KOG2891|consen  148 RPDTIHLA  155 (445)
T ss_pred             CCCceeec
Confidence            45666654

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=92.03  E-value=0.23  Score=47.72  Aligned_cols=47  Identities=23%  Similarity=0.394  Sum_probs=39.2

Q ss_pred             cccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508          854 VSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE  911 (914)
Q Consensus       854 v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~  911 (914)
                      |+|+.-++...||.+.|++.+.-|||+..+   +    |||-    .||+|++.+...
T Consensus        62 L~v~~s~~k~KikeaHrriM~~NHPD~GGS---P----YlAs----KINEAKdlLe~~  108 (112)
T KOG0723|consen   62 LGVTPSLDKDKIKEAHRRIMLANHPDRGGS---P----YLAS----KINEAKDLLEGT  108 (112)
T ss_pred             hCCCccccHHHHHHHHHHHHHcCCCcCCCC---H----HHHH----HHHHHHHHHhcc
Confidence            778888899999999999999999999753   2    6665    579999988654

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=89.56  E-value=0.31  Score=53.41  Aligned_cols=47  Identities=23%  Similarity=0.371  Sum_probs=39.1

Q ss_pred             cchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508          860 ITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE  911 (914)
Q Consensus       860 ~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~  911 (914)
                      .++.+|.++.++-++.+||||....| +.    -|...|.+|+.||++|.+.
T Consensus        58 a~~~qi~kah~kkv~kyHPDk~aa~g-~~----~~d~fFk~iqkA~evL~D~  104 (379)
T COG5269          58 AIPPQILKAHKKKVYKYHPDKTAAGG-NK----GCDEFFKLIQKAREVLGDR  104 (379)
T ss_pred             CCcHHHHHHHHHHHHHhCccchhccC-CC----CcHHHHHHHHHHHHHhccH
Confidence            34789999999999999999986533 32    3788999999999999764

>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]

Probab=88.63  E-value=7.7  Score=46.54  Aligned_cols=14  Identities=43%  Similarity=0.738  Sum_probs=8.5

Q ss_pred             cccchhhhhccCCC
Q 002508          748 IVDDLSSIFGAAGS  761 (914)
Q Consensus       748 ~~dd~~s~fg~~~~  761 (914)
                      |.|-|.|+||+.|.
T Consensus       360 I~dkl~s~~~~~~~  373 (591)
T KOG2412|consen  360 IFDKLDSLFGGIPD  373 (591)
T ss_pred             HHHHHHHHhcCCCC
Confidence            44556666766653

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=87.57  E-value=0.52  Score=48.50  Aligned_cols=57  Identities=26%  Similarity=0.342  Sum_probs=48.0

Q ss_pred             cccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHh
Q 002508          852 QPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKF  908 (914)
Q Consensus       852 k~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F  908 (914)
                      ..+++..-.+...|++.|++++-..|||++...|..++...+++..+..|++||..+
T Consensus       117 ~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         117 KVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             HHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            334444445568999999999999999999998888888888999999999999864

>KOG3054 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.19  E-value=8.3  Score=42.21  Aligned_cols=12  Identities=42%  Similarity=0.398  Sum_probs=7.5

Q ss_pred             cccccc------ccCccc
Q 002508          339 VWLTVS------EIPLFT  350 (914)
Q Consensus       339 v~ltvS------~ipl~t  350 (914)
                      |||-|+      ||+||+
T Consensus         5 v~vlVaa~llV~~i~l~l   22 (299)
T KOG3054|consen    5 VAVLVAAALLVAVILLFL   22 (299)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            565555      777754

>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]

Probab=82.49  E-value=36  Score=41.19  Aligned_cols=6  Identities=50%  Similarity=1.016  Sum_probs=2.8

Q ss_pred             hhhhhc
Q 002508          692 LESFFS  697 (914)
Q Consensus       692 lesFfs  697 (914)
                      |.+||+
T Consensus       364 l~s~~~  369 (591)
T KOG2412|consen  364 LDSLFG  369 (591)
T ss_pred             HHHHhc
Confidence            445553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	914
3ag7_A	106	An Auxilin-Like J-Domain Containing Protein, Jac1 J		2e-30
1n4c_A	182	Nmr Structure Of The J-Domain And Clathrin Substrat		6e-17
1xi5_J	114	Clathrin D6 Coat With Auxilin J-Domain Length = 114		3e-15
2qwn_B	94	Crystal Structure Of Disulfide-Bond-Crosslinked Com		1e-14
2qwo_B	92	Crystal Structure Of Disulfide-Bond-Crosslinked Com		1e-14
1nz6_A	101	Crystal Structure Of Auxilin J-Domain Length = 101		4e-14

>pdb|3AG7|A Chain A, An Auxilin-Like J-Domain Containing Protein, Jac1 J-Domain Length = 106

Iteration: 1
 Score =  131 bits (330), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 54/94 (57%), Positives = 78/94 (82%)
Query: 817 ETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCI 876
           + +D +I++W++GK GNIR+LL+T+QY+LW  SGW+PV L D+I   AV+K Y++A L +
Sbjct: 9   KNIDAKIRKWSSGKSGNIRSLLSTLQYILWSGSGWKPVPLMDMIEGNAVRKSYQRALLIL 68
Query: 877 HPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNS 910
           HPDK+QQKGA+  QKY+AEKVF+LL+EAW+ FN+
Sbjct: 69  HPDKLQQKGASANQKYMAEKVFELLQEAWDHFNT 102

>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate Binding Domain Of Bovine Auxilin Length = 182

Iteration: 1
 Score = 86.7 bits (213), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 70/117 (59%), Gaps = 10/117 (8%)
Query: 801 RDLQAQRDQAE--RHRIAETLDVE---IKRWAAGKEGNIRALLATMQYVLWP-ESGWQPV 854
           +D +  R  AE  +  +A+ +D E   I  W  GKE NIRALL+TM  VLW  E+ W+PV
Sbjct: 64  KDKKGPRTIAEMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPV 123
Query: 855 SLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911
            + DL+T   VKK YRKA L +HPDK    G   +Q   A+ +F  L +AW++F ++
Sbjct: 124 GMADLVTPEQVKKVYRKAVLVVHPDKAT--GQPYEQ--YAKMIFMELNDAWSEFENQ 176

>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain Length = 114

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/107 (42%), Positives = 65/107 (60%), Gaps = 8/107 (7%)
Query: 809 QAERHRIAETLDVE---IKRWAAGKEGNIRALLATMQYVLWP-ESGWQPVSLTDLITAAA 864
           +  +  +A+ +D E   I  W  GKE NIRALL+TM  VLW  E+ W+PV + DL+T   
Sbjct: 6   EMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQ 65
Query: 865 VKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911
           VKK YRKA L +HPDK    G   +Q   A+ +F  L +AW++F ++
Sbjct: 66  VKKVYRKAVLVVHPDKA--TGQPYEQ--YAKMIFMELNDAWSEFENQ 108

>pdb|2QWN|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi State Length = 94

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/92 (45%), Positives = 58/92 (63%), Gaps = 5/92 (5%)
Query: 821 VEIKRWAAGKEGNIRALLATMQYVLWP-ESGWQPVSLTDLITAAAVKKCYRKATLCIHPD 879
           ++I  W  GKE NIRALL+TM  VLW  E+ W+PV + DL+T   VKK YRKA L +HP 
Sbjct: 6   LKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPC 65
Query: 880 KVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911
           K    G   +Q   A+ +F  L +AW++F ++
Sbjct: 66  KA--TGQPYEQ--YAKMIFMELNDAWSEFENQ 93

>pdb|2QWO|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi Form #1 Length = 92

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/92 (45%), Positives = 58/92 (63%), Gaps = 5/92 (5%)
Query: 821 VEIKRWAAGKEGNIRALLATMQYVLWP-ESGWQPVSLTDLITAAAVKKCYRKATLCIHPD 879
           ++I  W  GKE NIRALL+TM  VLW  E+ W+PV + DL+T   VKK YRKA L +HP 
Sbjct: 5   LKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPC 64
Query: 880 KVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911
           K    G   +Q   A+ +F  L +AW++F ++
Sbjct: 65  KA--TGQPYEQ--YAKMIFMELNDAWSEFENQ 92

>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain Length = 101

Iteration: 1
 Score = 77.0 bits (188), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/92 (45%), Positives = 57/92 (61%), Gaps = 5/92 (5%)
Query: 821 VEIKRWAAGKEGNIRALLATMQYVLWP-ESGWQPVSLTDLITAAAVKKCYRKATLCIHPD 879
           ++I  W  GKE NIRALL+T   VLW  E+ W+PV   DL+T   VKK YRKA L +HPD
Sbjct: 8   LKILEWIEGKERNIRALLSTXHTVLWAGETKWKPVGXADLVTPEQVKKVYRKAVLVVHPD 67
Query: 880 KVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911
           K    G   +Q   A+ +F  L +AW++F ++
Sbjct: 68  KA--TGQPYEQ--YAKXIFXELNDAWSEFENQ 95

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	914
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	2e-39
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	6e-34
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	1e-33
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	1e-20
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	2e-18
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	2e-16
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-15
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-15
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-12
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-04
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	5e-08
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	5e-08
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	2e-07
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	7e-07
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	1e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	6e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	6e-04
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	1e-06
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	3e-05
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	2e-04
1cii_A	602	Colicin IA; bacteriocin, ION channel formation, tr	5e-05
3iyk_A	526	VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongu	8e-05
3iyk_A	526	VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongu	9e-05
3iyk_A	526	VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongu	2e-04
2dg7_A	195	Putative transcriptional regulator; helix-turn-hel	8e-05
2es4_D	332	Lipase chaperone; protein-protein complex, steric	9e-05
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	1e-04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	2e-04
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	3e-04
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	5e-04
3dmq_A	968	RNA polymerase-associated protein RAPA; SWF2/SNF2,	5e-04
1jad_A	251	PLC-beta, phospholipase C beta; alpha helical coil	5e-04
2rae_A	207	Transcriptional regulator, ACRR family protein; TE	5e-04

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score =  140 bits (354), Expect = 2e-39
 Identities = 54/100 (54%), Positives = 78/100 (78%)

Query: 812 RHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRK 871
                + +D +I++W++GK GNIR+LL+T+QY+LW  SGW+PV L D+I   AV+K Y++
Sbjct: 4   GSEEIKNIDAKIRKWSSGKSGNIRSLLSTLQYILWSGSGWKPVPLMDMIEGNAVRKSYQR 63

Query: 872 ATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911
           A L +HPDK+QQKGA+  QKY+AEKVF+LL+EAW+ FN+ 
Sbjct: 64  ALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTL 103

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score =  124 bits (312), Expect = 6e-34
 Identities = 40/96 (41%), Positives = 58/96 (60%), Gaps = 5/96 (5%)

Query: 817 ETLDVEIKRWAAGKEGNIRALLATMQYVLWP-ESGWQPVSLTDLITAAAVKKCYRKATLC 875
           +   ++I  W  GKE NIRALL+TM  VLW  E+ W+PV + DL+T   VKK YRKA L 
Sbjct: 1   DPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLV 60

Query: 876 IHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911
           +HP K   +      +  A+ +F  L +AW++F ++
Sbjct: 61  VHPCKATGQ----PYEQYAKMIFMELNDAWSEFENQ 92

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score =  126 bits (318), Expect = 1e-33
 Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 6/179 (3%)

Query: 735 ASSNMRKASSTTNIVDDLSSIFGAAGSSAGEFQDVEGETEERRRARLERHQRTQERAAKA 794
            S       S+     + +  F +      E +       E ++   +       +   A
Sbjct: 4   GSPEFSMPHSSPQNRPNYNVSFSSMPGGQNE-RGKAAANLEGKQKAADFEDLLSGQGFNA 62

Query: 795 LAEKNERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWP-ESGWQP 853
             +K      A+  + E  +  +   ++I  W  GKE NIRALL+TM  VLW  E+ W+P
Sbjct: 63  HKDKKGPRTIAEMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKP 122

Query: 854 VSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912
           V + DL+T   VKK YRKA L +HPDK   +      +  A+ +F  L +AW++F ++ 
Sbjct: 123 VGMADLVTPEQVKKVYRKAVLVVHPDKATGQ----PYEQYAKMIFMELNDAWSEFENQG 177

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 96.8 bits (240), Expect = 1e-20
 Identities = 44/276 (15%), Positives = 90/276 (32%), Gaps = 13/276 (4%)

Query: 411 QIDELEDFAMSRSWNNVNEYGEVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRE 470
           ++    D A +    +V ++              A ++    +    +    R A    E
Sbjct: 548 ELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFE 607

Query: 471 RESFKAARSRESVQ-------PDREERATQQDAQERLDREMQQREKGEEQRRLERERERE 523
                        +       P      +  D Q     + + R+  +   +L  E    
Sbjct: 608 MSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTN 667

Query: 524 REEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKAN 583
            +E   + +    E+E    +E+++   +   E+A +E  E  A    +++   A  +A 
Sbjct: 668 SQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAE 727

Query: 584 AAA------RERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARER 637
           + A       E +   A  +AQA A E  A   R +  R       RA  E    +A++ 
Sbjct: 728 SRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQL 787

Query: 638 ASVARTEAEALQRAERAAVQRAASEARERAAAEARE 673
           A+V   + + +  A      R  + A      +  +
Sbjct: 788 ANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVKLLQ 823

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 89.5 bits (221), Expect = 2e-18
 Identities = 41/210 (19%), Positives = 71/210 (33%), Gaps = 1/210 (0%)

Query: 452 KEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGE 511
              + +A  +    +      S          Q  R+           +    Q+     
Sbjct: 616 GTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKH 675

Query: 512 EQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEAR 571
           E +RLE+E  R R E+++   + E EK R   +E E            +   E  A  AR
Sbjct: 676 EAQRLEQE-ARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAAR 734

Query: 572 LKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEARE 631
           ++ E + +     A     E  A      + RE     AR + E   ++A++ AN EA++
Sbjct: 735 IEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKK 794

Query: 632 KEARERASVARTEAEALQRAERAAVQRAAS 661
            +    A    T  +         V+   S
Sbjct: 795 FKEMTEALGPGTIRDLAVAGPEMQVKLLQS 824

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 82.9 bits (204), Expect = 2e-16
 Identities = 39/205 (19%), Positives = 66/205 (32%), Gaps = 13/205 (6%)

Query: 494 QDAQERLDREMQQREKGEEQRRLERERER----EREEKEREKKRIEKEKERAREIEKERE 549
            +  E    +     K  +Q    +        + +  E   +R     +R+ ++  E  
Sbjct: 606 FEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEIT 665

Query: 550 KARQAVERATREARERAAAEARLKAER--AAVDKANAAARERAERAAVQRAQAEARERAA 607
              Q  E A +   +R   EAR + ER           AR+            E+   A 
Sbjct: 666 TNSQ--EAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAK 723

Query: 608 AEARERAERAAAEARE-----RANAEAREKEARERASVARTEAEALQRAERAAVQRAASE 662
           AEA  RAE A  E        +  A+A   E        +   E      RA ++   S+
Sbjct: 724 AEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSK 783

Query: 663 ARERAAAEARERAAAAARANQNQQK 687
           A++ A  EA++             +
Sbjct: 784 AQQLANVEAKKFKEMTEALGPGTIR 808

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 81.0 bits (200), Expect = 1e-15
 Identities = 49/262 (18%), Positives = 107/262 (40%), Gaps = 5/262 (1%)

Query: 445  AASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREM 504
                   KE   +AEA+ +  ++   +   +    +E +Q + E  A  ++ + RL  + 
Sbjct: 863  DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKK 922

Query: 505  QQREK--GEEQRRLERERER---EREEKEREKKRIEKEKERAREIEKEREKARQAVERAT 559
            Q+ E+   E + R+E E ER    + EK++ ++++   +E+  E E  R+K +     A 
Sbjct: 923  QELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTAD 982

Query: 560  REARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAA 619
             + ++       ++ +   + K      ER        A+ E + +   + + + E   +
Sbjct: 983  GKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMIS 1042

Query: 620  EARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAA 679
            E   R   E + ++  E+         +    + A +Q   +E + + A +  E  AA A
Sbjct: 1043 ELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALA 1102

Query: 680  RANQNQQKNDNDLESFFSMSSR 701
            R      + +N L+    + S 
Sbjct: 1103 RLEDETSQKNNALKKIRELESH 1124

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 78.7 bits (194), Expect = 5e-15
 Identities = 61/376 (16%), Positives = 124/376 (32%), Gaps = 43/376 (11%)

Query: 447  SAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQ 506
                 +E M   + + +  KE +++   +     +      EE+   Q  + + + E+  
Sbjct: 851  KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ-EKLQAETELYA 909

Query: 507  REKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERA 566
              +    R   +++E E    E  + RIE+E+ER+++++ E++K +Q +     +  E  
Sbjct: 910  EAEEMRVRLAAKKQELEEILHE-MEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEE 968

Query: 567  AAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERAN 626
            AA  +L+ E+   D       +       Q  +     +   E         AE  E+A 
Sbjct: 969  AARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028

Query: 627  AEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQ 686
               + K   E      +E E   + E  + Q       E+   +    ++         Q
Sbjct: 1029 NLTKLKNKHES---MISELEVRLKKEEKSRQEL-----EKIKRKLEGESSDLHEQIAELQ 1080

Query: 687  KNDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPARRTSVGASSNMRKASSTT 746
                +L++  +       A   R     S  ++  K                  K     
Sbjct: 1081 AQIAELKAQLAKKEEELQAALARLEDETSQKNNALK------------------KIRELE 1122

Query: 747  NIVDDLSSIFGAAGSSAGEFQDVEGETEERRRARLERHQRTQERAAKALAEKNERDLQAQ 806
            + + DL                 + E+E+  R + E+ +R      +AL  + E  L   
Sbjct: 1123 SHISDLQE---------------DLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTT 1167

Query: 807  RDQAERHRIAETLDVE 822
              Q E        D +
Sbjct: 1168 ATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 69.5 bits (170), Expect = 4e-12
 Identities = 40/256 (15%), Positives = 89/256 (34%), Gaps = 18/256 (7%)

Query: 443  IAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDR 502
                 +  ++    + + +    +E  E E      +R+ +Q    E+ T     ++++ 
Sbjct: 938  EEEERSQQLQAEKKKMQQQMLDLEEQLEEE----EAARQKLQ---LEKVTADGKIKKMED 990

Query: 503  EMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAV----ERA 558
            ++   E  ++  +L +ER+   E        + +E+E+A+ + K + K    +     R 
Sbjct: 991  DILIME--DQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRL 1048

Query: 559  TREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAA 618
             +E + R   E   +         +    E   + A  +AQ   +E     A  R E   
Sbjct: 1049 KKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDET 1108

Query: 619  AEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAA 678
            ++ +  A  + RE E+         E+E   +A R   ++   +  E      +      
Sbjct: 1109 SQ-KNNALKKIRELESHISDLQEDLESE---KAARNKAEKQKRDLSEE-LEALKTELEDT 1163

Query: 679  ARANQNQQKNDNDLES 694
                  QQ+       
Sbjct: 1164 LDTTATQQELRGSDYK 1179

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 67.6 bits (165), Expect = 1e-11
 Identities = 39/251 (15%), Positives = 91/251 (36%), Gaps = 5/251 (1%)

Query: 445  AASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREM 504
                A  +E   R  AK +  +E+      +     E  Q  + E+   Q     L+ ++
Sbjct: 905  TELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQL 964

Query: 505  QQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARE 564
            ++ E    +++L+ E+     + ++ +  I   +++  ++ KER+   + V   T    E
Sbjct: 965  EEEEA--ARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAE 1022

Query: 565  RAAAEARLKAERAAVDKANAAARERAERAAVQRAQAE-ARERAAAEARERAERAAAEARE 623
                   L   +   +   +    R ++    R + E  + +   E+ +  E+ A    +
Sbjct: 1023 EEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQ 1082

Query: 624  RANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQ 683
             A  +A+  +  E    A    E    +++    +   E      ++ +E   +   A  
Sbjct: 1083 IAELKAQLAKKEEELQAALARLEDET-SQKNNALKKIRELESH-ISDLQEDLESEKAARN 1140

Query: 684  NQQKNDNDLES 694
              +K   DL  
Sbjct: 1141 KAEKQKRDLSE 1151

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 62.2 bits (151), Expect = 6e-10
 Identities = 35/223 (15%), Positives = 80/223 (35%), Gaps = 10/223 (4%)

Query: 444  AAASAAAMKEAMDRAEAKFRHAK-EMRERESFKAARSRESVQPDREERATQQDAQERLDR 502
              A+   ++     A+ K +  + ++   E      ++E    +        +  E    
Sbjct: 967  EEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEE--- 1023

Query: 503  EMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREA 562
            E + +   + + + E          ++E+K  ++ ++  R++E E     + +     + 
Sbjct: 1024 EEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQI 1083

Query: 563  RERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEAR 622
             E  A  A+ + E  A     A AR   E +    A  + RE   +   +  E   +E  
Sbjct: 1084 AELKAQLAKKEEELQA-----ALARLEDETSQKNNALKKIRE-LESHISDLQEDLESEKA 1137

Query: 623  ERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARE 665
             R  AE ++++  E     +TE E          +   S+ ++
Sbjct: 1138 ARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKD 1180

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 55.6 bits (134), Expect = 8e-08
 Identities = 34/201 (16%), Positives = 80/201 (39%), Gaps = 18/201 (8%)

Query: 451  MKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREER-------------ATQQDAQ 497
            M++ +   E +  + K  +ER+  +   S  +     EE              +   + +
Sbjct: 988  MEDDILIMEDQ--NNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELE 1045

Query: 498  ERLDREMQQREKGEEQ-RRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVE 556
             RL +E + R++ E+  R+LE E     E+    + +I + K +  + E+E + A   +E
Sbjct: 1046 VRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLE 1105

Query: 557  RATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAER 616
              T +          L++  + + +   +  E+A R   ++ + +  E   A   E  + 
Sbjct: 1106 DETSQKNNALKKIRELESHISDLQEDLES--EKAARNKAEKQKRDLSEELEALKTELEDT 1163

Query: 617  AAAEARERANAEAREKEARER 637
                A ++    +  K+  ++
Sbjct: 1164 LDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 49.1 bits (117), Expect = 8e-06
 Identities = 24/147 (16%), Positives = 48/147 (32%), Gaps = 6/147 (4%)

Query: 437  EDVESSIAAASAAAM--KEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQ 494
             ++E  +     +    ++   + E +     E       + A  +  +    EE     
Sbjct: 1042 SELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAAL 1101

Query: 495  DAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQA 554
               E    +     K  + R LE      +E+ E EK    K +++ R++ +E E  +  
Sbjct: 1102 ARLEDETSQKNNALK--KIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTE 1159

Query: 555  VERATREARERAAAEARLKAERAAVDK 581
            +E            E R    +   DK
Sbjct: 1160 LEDTLDT--TATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 25/182 (13%), Positives = 63/182 (34%), Gaps = 10/182 (5%)

Query: 440  ESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQER 499
            E  +     + +   +   E K ++  +++ +     +     ++ + + R   +  + +
Sbjct: 1005 ERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK 1064

Query: 500  LDREMQQ-----REKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQA 554
            L+ E         E   +   L+ +  ++ EE +    R+E E  +     K+  +    
Sbjct: 1065 LEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESH 1124

Query: 555  VERATREARERAAAEARLKAERAAVD---KANAAARERAERAAVQRAQAEARERAAAEAR 611
            +     +    +   AR KAE+   D   +  A   E  +       Q E R     +  
Sbjct: 1125 ISDLQEDLE--SEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182

Query: 612  ER 613
            ++
Sbjct: 1183 DK 1184

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 70.5 bits (173), Expect = 2e-12
 Identities = 38/263 (14%), Positives = 83/263 (31%), Gaps = 24/263 (9%)

Query: 448  AAAMKEAMDRAEAKFRHAKEMRER-----ESFKAARSRESVQPDREERAT---QQDAQER 499
            AA + +   R     +  + MR+         +    R   Q    E  +   Q+  +  
Sbjct: 818  AAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGW 877

Query: 500  LDREMQQREKGEEQRRLERER----EREREEKEREKKRIEKEKERAREIEKEREKARQAV 555
            L R    R            R    +RE ++ + E + +E+ K+    +E +  + ++ +
Sbjct: 878  LARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKI 937

Query: 556  ERATREARERAAA----EARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEAR 611
            +   +E +         E     E   +       R   E A     +  + +   A+ R
Sbjct: 938  DEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLR 997

Query: 612  ERAERAAAEARE--------RANAEAREKEARERASVARTEAEALQRAERAAVQRAASEA 663
            +   +   E +         +   E    E +E+ ++ +TE E L R      +      
Sbjct: 998  KELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETM 1057

Query: 664  RERAAAEARERAAAAARANQNQQ 686
             ++   E ++            Q
Sbjct: 1058 EKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 63.2 bits (154), Expect = 3e-10
 Identities = 37/258 (14%), Positives = 72/258 (27%), Gaps = 13/258 (5%)

Query: 448  AAAMKEAMDRAEAKFRHAKEMRERESF----KAARSRESVQPDREERATQQDAQERLDRE 503
            AA   +   R      +A  +R   +     K  R     +  +  R      Q  L R 
Sbjct: 793  AAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALL-RG 851

Query: 504  MQQREKGEEQRRLERER---EREREEKEREKKRIEKEKERAREIEKEREKARQAVERATR 560
               R K +   R  +     +  R    R       +     +    R  A++ +++   
Sbjct: 852  YLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKI 911

Query: 561  EARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEA----RERAER 616
            EAR     +         + +      E+ +       +    E   +      R   ER
Sbjct: 912  EARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVER 971

Query: 617  AAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAA 676
                  E  NA  R    +E  +  R E    Q  E+  ++  A + +        E   
Sbjct: 972  LRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQT-EKKTIEEWADKYKHETEQLVSELKE 1030

Query: 677  AAARANQNQQKNDNDLES 694
                    +++ +  +  
Sbjct: 1031 QNTLLKTEKEELNRRIHD 1048

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 24/132 (18%), Positives = 48/132 (36%), Gaps = 3/132 (2%)

Query: 446  ASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQ 505
                 ++        K R   E       +A  +   V   +EE A  +    +   E +
Sbjct: 949  EKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKK 1008

Query: 506  QREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARER 565
              E+  ++ + E E+     +++    + EKE+   R I  + ++  + +E+   E  E 
Sbjct: 1009 TIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN-RRIHDQAKEITETMEKKLVE--ET 1065

Query: 566  AAAEARLKAERA 577
               E  L  ER 
Sbjct: 1066 KQLELDLNDERL 1077

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 63.1 bits (154), Expect = 3e-10
 Identities = 31/237 (13%), Positives = 76/237 (32%), Gaps = 7/237 (2%)

Query: 457 RAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRL 516
           RA  + +     R  E  +    +++    R+   + +  Q       ++ +K E+  + 
Sbjct: 754 RASEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQ-SFMNAHKEYKKTEKPPKG 812

Query: 517 -EREREREREEKEREKKRIEKEKE---RAREIEKEREKARQAVERATREARERAAAEARL 572
            E           + K R+ K +     A     E +    A+E+A +E  E    E + 
Sbjct: 813 QEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKR 872

Query: 573 KAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREK 632
           + + A + +     R   +       ++             A +A  +  E  + E +  
Sbjct: 873 QKKIAVLLQ--KYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSL 930

Query: 633 EARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKND 689
           E +  + +    A+  +       +    +    A      +++A    N    + +
Sbjct: 931 EGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELE 987

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 1e-08
 Identities = 51/382 (13%), Positives = 98/382 (25%), Gaps = 113/382 (29%)

Query: 595 VQRAQAEARERAAAEARER-----AERAAAEARERANAEAREKEARERA----------S 639
           +   Q E  ++   E               E R+ +       E R+R           +
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130

Query: 640 VARTEAEALQRAERAAVQRAASEARERAAAEARER---------------AAAAARANQN 684
           V+R +           +++A  E R         +               A     + + 
Sbjct: 131 VSRLQ-------PYLKLRQALLELR-------PAKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 685 QQKNDNDLESF---FSMSSRPSSAPRPRANTS---DSLFDSQSKGGPEPARRTSVGAS-- 736
           Q K D  +  F       + P +            D  + S+S        R     +  
Sbjct: 177 QCKMDFKI--FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 737 SNMRKASSTTN---IVDDLSS--IFGAAG---------SSAGEFQDVEGETEERRRARLE 782
             + K+    N   ++ ++ +   + A                   +   T       L+
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT--TTHISLD 292

Query: 783 RHQR--TQERA----AKALAEKNERDLQAQRDQAERHR------IAETLDVEIKRWAAGK 830
            H    T +       K L  + + DL     +           IAE++   +  W   K
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQ-DL---PREVLTTNPRRLSIIAESIRDGLATWDNWK 348

Query: 831 EGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQ 890
             N   L   ++            SL  L   A  +K + +  L + P            
Sbjct: 349 HVNCDKLTTIIE-----------SSLNVL-EPAEYRKMFDR--LSVFPPSAH-------- 386

Query: 891 KYIAEKVFDLLKEAWNKFNSEE 912
             I   +  L+   W      +
Sbjct: 387 --IPTILLSLI---WFDVIKSD 403

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 53.2 bits (127), Expect = 5e-08
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 15/92 (16%)

Query: 512 EQRRLEREREREREEKEREKKRI-EKEKERAREIEKEREKARQAVERATREARERAAAEA 570
           +  RL +E E  R+ +E ++KR+ E +       ++ REKA++ +E   +   E+     
Sbjct: 76  QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ----- 130

Query: 571 RLKAERAAVDKANAAARERAERAAVQRAQAEA 602
                   V+K     R  A++A  Q+  A+ 
Sbjct: 131 --------VEKNKINNRI-ADKAFYQQPDADI 153

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 52.9 bits (126), Expect = 5e-08
 Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 6/79 (7%)

Query: 511 EEQRRLEREREREREEKEREKKRI-EKEKERAREIEKEREKARQAVERATREARERAAAE 569
            ++   E E  R+   +E ++KR+ E +       ++ REKA++ +E   +   E+    
Sbjct: 77  ADRLTQEPESIRKW--REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQV--- 131

Query: 570 ARLKAERAAVDKANAAARE 588
            + K      DKA     +
Sbjct: 132 EKNKINNRIADKAFYQQPD 150

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 51.7 bits (123), Expect = 2e-07
 Identities = 15/78 (19%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 499 RLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERA 558
           + DR  Q+ E   + R  +R+R +E +   +  ++  +EK + +++E+  ++  + VE+ 
Sbjct: 76  QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAK-KDLEEWNQRQSEQVEKN 134

Query: 559 TREARERAAAEARLKAER 576
               R    A+     + 
Sbjct: 135 KINNRI---ADKAFYQQP 149

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 49.8 bits (118), Expect = 7e-07
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 7/77 (9%)

Query: 484 QPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKERE------KKRIEKE 537
           Q DR  +  +   + R ++  + +E     +    +  RE+ +K+ E       +++EK 
Sbjct: 76  QADRLTQEPESIRKWREEQRKRLQELDAASKV-MEQEWREKAKKDLEEWNQRQSEQVEKN 134

Query: 538 KERAREIEKEREKARQA 554
           K   R  +K   +   A
Sbjct: 135 KINNRIADKAFYQQPDA 151

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 10/86 (11%)

Query: 530 EKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARER 589
           +  R+ +E E  R+  +E ++ R   E     A +    E R KA++   +      + +
Sbjct: 76  QADRLTQEPESIRK-WREEQRKRLQ-ELD--AASKVMEQEWREKAKKDLEE----WNQRQ 127

Query: 590 AERAAVQRAQAEARERAAAEARERAE 615
           +E+  V++ +   R    A  ++   
Sbjct: 128 SEQ--VEKNKINNRIADKAFYQQPDA 151

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.9 bits (95), Expect = 6e-04
 Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 4/78 (5%)

Query: 598 AQAEARERAAAEA-RERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAV 656
           AQA+ R     E+ R+  E      +E   A    ++  E    A+ + E   + +   V
Sbjct: 75  AQAD-RLTQEPESIRKWREEQRKRLQELDAASKVMEQ--EWREKAKKDLEEWNQRQSEQV 131

Query: 657 QRAASEARERAAAEARER 674
           ++     R    A  ++ 
Sbjct: 132 EKNKINNRIADKAFYQQP 149

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.9 bits (95), Expect = 6e-04
 Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 3/72 (4%)

Query: 607 AAEARERAE-RAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARE 665
           A   R   E  +  + RE      +E +A  +        +A +  E    +++  E  E
Sbjct: 75  AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQS--EQVE 132

Query: 666 RAAAEARERAAA 677
           +     R    A
Sbjct: 133 KNKINNRIADKA 144

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 24/209 (11%), Positives = 66/209 (31%), Gaps = 31/209 (14%)

Query: 516 LERERERE------------------REEKEREKKRIEKEKERAREIEKEREKARQAVER 557
           +E  RE+                   +   +++     ++   + E  +    A +  ++
Sbjct: 754 IEEAREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKK 813

Query: 558 ATREARERAAAEAR------------LKAERAAVDKANAAARERAERAAVQRAQAEARER 605
             +  + +  +E              +K E              +  +A+++A+ E  E 
Sbjct: 814 TEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEA 873

Query: 606 AAAEARERAERAAAEARERANAEAREKEARERA-SVARTEAEALQRAERAAVQRAASEAR 664
              E + + + A    +     +  E  A  ++  +   E      A +A ++   +   
Sbjct: 874 LRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDG 933

Query: 665 ERAAAEARERAAAAARANQNQQKNDNDLE 693
           E  + E +  +   +   Q  + N N + 
Sbjct: 934 ECQSLEGQSNSDLLSILAQLTELNYNGVP 962

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 46.5 bits (109), Expect = 3e-05
 Identities = 17/118 (14%), Positives = 46/118 (38%), Gaps = 8/118 (6%)

Query: 459 EAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQ--RRL 516
                   +    +  +    R   +  +       + Q + ++ M+Q+E+  ++  ++L
Sbjct: 472 TDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQL 531

Query: 517 EREREREREEKEREKKRI------EKEKERAREIEKEREKARQAVERATREARERAAA 568
             + E +R +  +E++R       E+E+      +KE    +  ++    + R R A 
Sbjct: 532 TEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRKAC 589

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 43.8 bits (102), Expect = 2e-04
 Identities = 24/182 (13%), Positives = 61/182 (33%), Gaps = 2/182 (1%)

Query: 428 NEYGEVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDR 487
                + SP + E      S         +     +       R+  +A    ++    +
Sbjct: 409 GLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSK 468

Query: 488 EE-RATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEK 546
           E          + L  + ++ E    +    +   +   E +R+ +++ ++KER+ +   
Sbjct: 469 ESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHL 528

Query: 547 EREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERA 606
           ++   +   +R      +      +L+ E+  + K       R  +  +Q  Q + R R 
Sbjct: 529 KQLTEKMENDRVQLLKEQERTLALKLQ-EQEQLLKEGFQKESRIMKNEIQDLQTKMRRRK 587

Query: 607 AA 608
           A 
Sbjct: 588 AC 589

>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1 Length = 602

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 51/443 (11%), Positives = 118/443 (26%), Gaps = 15/443 (3%)

Query: 384 YSSFSNSPQCTHSPKSTRAGTRSSAASQIDELEDFAMSRSWNNVNEYGEV---------- 433
           +SSF N      +     + TRS    +  E+  +  + S        +           
Sbjct: 24  WSSFGNKTIWGGNEWVDDSPTRSDIEKRDKEITAYKNTLSAQQKENENKRTEAGKRLSAA 83

Query: 434 -PSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERAT 492
             + E  E+++    A     A    +       E+RE          ++++   E R  
Sbjct: 84  IAAREKDENTLKTLRAGNADAADITRQEFRLLQAELREYGFRTEIAGYDALRLHTESRML 143

Query: 493 QQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKAR 552
             DA        + R   E+  + +++ +   ++        E+ K        E EK  
Sbjct: 144 FADADSLRISPREARSLIEQAEKRQKDAQNADKKAADMLAEYERRKGILDTRLSELEKNG 203

Query: 553 QAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARE 612
            A        + R   +        +  +   ++   +   A        ++    +   
Sbjct: 204 GAALAVLDAQQARLLGQQTRNDRAISEARNKLSSVTESLNTARNALTRAEQQLTQQKNTP 263

Query: 613 RAERAAAE----ARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAA 668
             +   +      R   N           A   +    A+           +    +   
Sbjct: 264 DGKTIVSPEKFPGRSSTNDSIVVSGDPRFAGTIKITTSAVIDNRANLNYLLSHSGLDYKR 323

Query: 669 AEARERAAAAARANQNQQKNDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPA 728
               +R        +  +K  N   + +    +     R +  +++S  +S         
Sbjct: 324 NILNDRNPVVTEDVEGDKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSART 383

Query: 729 RRTSVGASSNMRKASSTTNIVDDLSSIFGAAGSSAGEFQDVEGETEERRRARLERHQRTQ 788
                   +         NI + LS I         +  +++   +            ++
Sbjct: 384 NEQKHANDALNALLKEKENIRNQLSGINQKIAEEKRKQDELKATKDAINFTTEFLKSVSE 443

Query: 789 ERAAKALAEKNERDLQAQRDQAE 811
           +  AKA     E   QA+  +  
Sbjct: 444 KYGAKAEQLAREMAGQAKGKKIR 466

>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus} Length = 526

 Score = 45.3 bits (107), Expect = 8e-05
 Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 7/136 (5%)

Query: 488 EERATQQDAQERLDREMQQREKG--EEQRRLEREREREREEKEREKKRIEKEKERAREI- 544
           E+    +  + + + +++++     EE             E E++   + K      +I 
Sbjct: 103 EDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKIL 162

Query: 545 EKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARE 604
            +E  + R+      +E  ER  AE  +  E      A   A E  ER  +   Q EA +
Sbjct: 163 TEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIE-VERDGM---QEEAIQ 218

Query: 605 RAAAEARERAERAAAE 620
             A    +  E A+ E
Sbjct: 219 EIAGMTADVLEAASEE 234

>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus} Length = 526

 Score = 44.9 bits (106), Expect = 9e-05
 Identities = 31/173 (17%), Positives = 64/173 (36%), Gaps = 14/173 (8%)

Query: 432 EVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERA 491
           E+P P         A    +++       + ++  +++E+   +       +  +     
Sbjct: 83  EIPDPLSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEI 142

Query: 492 TQQDAQERLDREMQQREK--GEEQRRLERERER-EREEKER---EKKRIEKEKER----A 541
             +   + L++ +    K   EE  ++ R     ++E  ER   E   +++ +++     
Sbjct: 143 EDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALK 202

Query: 542 REIEKER----EKARQAVERATREARERAAAEARLKAERAAVDKANAAARERA 590
             IE ER    E+A Q +   T +  E A+ E  L     A   A   A E A
Sbjct: 203 NAIEVERDGMQEEAIQEIAGMTADVLEAASEEVPLIGAGMATAVATGRAIEGA 255

>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus} Length = 526

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 31/172 (18%), Positives = 60/172 (34%), Gaps = 25/172 (14%)

Query: 513 QRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARL 572
           Q +L+   + +R E  R K   + +++  +E+E+              + ++       +
Sbjct: 96  QAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAV 155

Query: 573 KAERAAVDKANAAARERAERAAVQRA-QAEARERAAAEARERAERAAAEARERANAEARE 631
            +    + +      E  +   +  A Q E  ER  AE     E      R++ +A    
Sbjct: 156 TSYNKILTE------EDLQMRRLATALQKEIGERTHAETVMVKE-----YRDKIDALKNA 204

Query: 632 KEARERASVARTEAEALQRAERAAVQRA--ASEARERAAAEARERAAAAARA 681
            E          E + +Q  E A  + A   ++  E A+ E     A  A A
Sbjct: 205 IEV---------ERDGMQ--EEAIQEIAGMTADVLEAASEEVPLIGAGMATA 245

>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor} Length = 195

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 22/134 (16%), Positives = 35/134 (26%), Gaps = 14/134 (10%)

Query: 552 RQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEA----RERAA 607
                   R         A L A   A+ +  A    + E AA +RA  +A    +ER  
Sbjct: 60  ELLPPAVARAVLAADPGAAPLTAVLDAMSQVGAQLVAQVEGAAQRRAVIDASPELQERER 119

Query: 608 AEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERA 667
            ++   +         R                A   A+    A  +A +R         
Sbjct: 120 TKSAAISRAVQDALVRRQVDADT----------AELVAQLATVAFGSAFRRWIDAEGHAD 169

Query: 668 AAEARERAAAAARA 681
                +      RA
Sbjct: 170 FGSCLDTVTDRLRA 183

>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1 Length = 332

 Score = 44.8 bits (105), Expect = 9e-05
 Identities = 37/233 (15%), Positives = 85/233 (36%), Gaps = 6/233 (2%)

Query: 435 SPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQ 494
           +P  +++ +    AA +  +  +AEA     +     ++        +V  D+ + A  Q
Sbjct: 100 TPAALDALVRREIAAQLDGSPAQAEALGVWRRYRAYFDALAQLPGDGAVLGDKLDPAAMQ 159

Query: 495 DAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEK---EKERAREIEKEREK- 550
            A ++      +      +     E+ R+R + ER +   +     +++A  +     + 
Sbjct: 160 LALDQRAALADRTLGEWAEPFFGDEQRRQRHDLERIRIANDTTLSPEQKAARLAALDAQL 219

Query: 551 --ARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAA 608
               +A + A    ++     A L+   A  D+  A   +     A  RA    ++  A 
Sbjct: 220 TPDERAQQAALHAQQDAVTKIADLQKAGATPDQMRAQIAQTLGPEAAARAAQMQQDDEAW 279

Query: 609 EARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAAS 661
           + R +A  A  +         ++++AR      +T     +    A++ R A 
Sbjct: 280 QTRYQAYAAERDRIAAQGLAPQDRDARIAQLRQQTFTAPGEAIRAASLDRGAG 332

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 22/160 (13%), Positives = 55/160 (34%), Gaps = 11/160 (6%)

Query: 475 KAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRI 534
             +R+ ++      +  + +D    L+ E     K +     + + E+   +   E  R+
Sbjct: 110 IISRNGDTSYKIDGKTVSYKDYSIFLENENILI-KAKNFLVFQGDVEQIAAQSPVELSRM 168

Query: 535 EKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAA-------- 586
            +E   + + +KE E+ ++ +E+ ++ A E      R+  E                   
Sbjct: 169 FEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGS 228

Query: 587 --RERAERAAVQRAQAEARERAAAEARERAERAAAEARER 624
              E   R  V   + E  +    +   +  +   + +E 
Sbjct: 229 RYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKEL 268

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 36/248 (14%), Positives = 57/248 (22%), Gaps = 16/248 (6%)

Query: 446 ASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQ 505
            +A  M   +     +         R       S        +      D         +
Sbjct: 314 TTAEEMSAQLTGVLREVVAQDTGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAE 373

Query: 506 QREKGEEQRRLERER--EREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREAR 563
           +    E    L        +      +   + +  +    +   R  A  A      E+ 
Sbjct: 374 KLTANEIVTALSVPLVDPTDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSESV 433

Query: 564 ERAAAEARLKAERAAVDKANAAARERAE------RAAVQRAQAEARERAAAEARERAERA 617
           E    E R   +   V KA     + AE      R    RA AE        A +     
Sbjct: 434 ELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEV 493

Query: 618 AAE-----ARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEAR 672
                   A + A A   E              + +       +  A   AR R+A   R
Sbjct: 494 LDTFPGELAPKLALAATAELAGNTD---EHKFYQTVWSTNDGVISAAFGLARARSAEGDR 550

Query: 673 ERAAAAAR 680
             A     
Sbjct: 551 VGAVRTLD 558

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 20/147 (13%), Positives = 53/147 (36%), Gaps = 2/147 (1%)

Query: 487 REERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEK 546
           R++     + +E  ++ +   E  EE+  L+ +  +  +  +    +I   +++  EI+ 
Sbjct: 31  RKDLDKALNDKEAKNKAILNLE--EEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKS 88

Query: 547 EREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERA 606
           ERE     +E    + R   A       +     K+      + E   +++   E     
Sbjct: 89  ERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLV 148

Query: 607 AAEARERAERAAAEARERANAEAREKE 633
             E +   E      +++ +   + + 
Sbjct: 149 ENEVKNIKETQQIIFKKKEDLVEKTEP 175

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418

 Score = 42.5 bits (99), Expect = 5e-04
 Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 5/119 (4%)

Query: 434 PSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQ 493
                 +  +  +  A M+E      AK +   EM   + F   + +E VQ  ++  A  
Sbjct: 303 VDNNKNKGQLTKSPLAQMEEERREHVAKMKK-MEMEMEQVF-EMKVKEKVQKLKDSEAEL 360

Query: 494 QDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKAR 552
           Q   E++ + ++ + K  E++R + E E+   E    ++RI +++  +R +EK ++K +
Sbjct: 361 QRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEA---QQRILEQQNSSRTLEKNKKKGK 416

>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968

 Score = 43.1 bits (101), Expect = 5e-04
 Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 1/100 (1%)

Query: 568 AEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANA 627
                  +  AV++   +    A +  V         +    AR   + A  EA E+ +A
Sbjct: 857 EFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSA 916

Query: 628 E-AREKEARERASVARTEAEALQRAERAAVQRAASEARER 666
           E +R +  R      R +      + R  V  +  +A  R
Sbjct: 917 ELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWR 956

>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1 Length = 251

 Score = 42.1 bits (98), Expect = 5e-04
 Identities = 26/215 (12%), Positives = 79/215 (36%), Gaps = 3/215 (1%)

Query: 439 VESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQE 498
                  AS A +++     +   +  KE++E E  K ++ RE +         +     
Sbjct: 12  QLPEPQTASLAELQQMKLFLKLLKKQEKELKELER-KGSKRREELLQKYSVLFLEPVYPR 70

Query: 499 RLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERA 558
            LD ++ + ++  E   +    E     + R+++   ++  +  E+ +E ++  +     
Sbjct: 71  GLDSQVVELKERLEMELIHLGEEYHDGIRRRKEQHATEQTAKITELARE-KQIAELKALK 129

Query: 559 TREARERAAAEARLKAERA-AVDKANAAARERAERAAVQRAQAEARERAAAEARERAERA 617
                     + +L+A+R   +     +  ++A +  +++    +  +   +  +     
Sbjct: 130 ESSESNIKDIKKKLEAKRLDRIQVMMRSTSDKAAQERLKKEINNSHIQEVVQTIKLLTEK 189

Query: 618 AAEARERANAEAREKEARERASVARTEAEALQRAE 652
            A  +++   +  E     +    + + EA+   E
Sbjct: 190 TARYQQKLEEKQAENLRAIQEKEGQLQQEAVAEYE 224

>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP} Length = 207

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 10/134 (7%), Positives = 26/134 (19%), Gaps = 4/134 (2%)

Query: 552 RQAVERATREARERAAAEARLKAERAAVDKANAAARERAE----RAAVQRAQAEARERAA 607
              +     +   +      +    AA+ + NA           R  +       +  + 
Sbjct: 70  DAHLAEMRAQLAAQPDDIPIVDGLTAALLQFNAFPASEEINHRKRMGLILRVPALQAYSV 129

Query: 608 AEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERA 667
                     A     R      +   R    +    A +             +E     
Sbjct: 130 VMYEGWRNVIAEYVASRLGTSPTDHVPRTVGYLLLGVAMSAYEQWLDDDSLELNELLASG 189

Query: 668 AAEARERAAAAARA 681
                +  ++    
Sbjct: 190 MQSLYDGLSSLGEP 203

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	914
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	4e-21
d2es4d1	280	a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)	7e-09
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	2e-06
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	9e-06
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	1e-04
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	2e-04
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	4e-04
d1sa0e_	138	a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus	0.004

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.5 bits (214), Expect = 4e-21
 Identities = 41/95 (43%), Positives = 57/95 (60%), Gaps = 5/95 (5%)

Query: 819 LDVEIKRWAAGKEGNIRALLATMQYVLWP-ESGWQPVSLTDLITAAAVKKCYRKATLCIH 877
             ++I  W  GKE NIRALL+TM  VLW  E+ W+PV + DL+T   VKK YRKA L +H
Sbjct: 3   EKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVH 62

Query: 878 PDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912
           PD    K      +  A+ +F  L +AW++F ++ 
Sbjct: 63  PD----KATGQPYEQYAKMIFMELNDAWSEFENQG 93

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (115), Expect = 2e-06
 Identities = 16/119 (13%), Positives = 45/119 (37%), Gaps = 4/119 (3%)

Query: 435 SPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQ 494
           S E +  +I        ++  +    + +        +     + +     ++     ++
Sbjct: 184 SKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKN----EQMMEQKER 239

Query: 495 DAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQ 553
             QE L +  ++ E    Q   E+ER    + +E+E+   E  ++ +R ++ E +  + 
Sbjct: 240 SYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQT 298

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 9e-06
 Identities = 21/119 (17%), Positives = 56/119 (47%), Gaps = 3/119 (2%)

Query: 447 SAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQ 506
           S  +M +A+ + +      ++  E E  KA  ++ S +   E +   +   E+ +R  Q+
Sbjct: 184 SKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQE 243

Query: 507 REKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARER 565
             K   ++    E +R +  KE+E+    K +E+ + +++  +K  + ++   ++ + +
Sbjct: 244 HLKQLTEKM---ENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 12/86 (13%), Positives = 33/86 (38%)

Query: 449 AAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQRE 508
           +A   A    E + ++ + M ++E       ++  +    +R      QER      Q +
Sbjct: 215 SAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQ 274

Query: 509 KGEEQRRLEREREREREEKEREKKRI 534
           +   +   ++E    + E +  + ++
Sbjct: 275 EQLLKEGFQKESRIMKNEIQDLQTKM 300

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 31/269 (11%), Positives = 93/269 (34%), Gaps = 26/269 (9%)

Query: 431 GEVPSPED-VESSIAAASAAAMKEAMDRAEAKFRHAKEMR-------ERESFKAARSRES 482
           G++P  E+ V +     ++AA+++A+   E +     ++              + R    
Sbjct: 24  GDLPCMENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIE 83

Query: 483 VQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERA- 541
           V      +      Q+ L  +++++     ++  E   +R     +     +E+E +   
Sbjct: 84  VFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGI 143

Query: 542 -----------REIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERA 590
                      ++++  ++K  +   +  +            ++   A+ + +    E+ 
Sbjct: 144 YSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKE 203

Query: 591 ERAAVQRAQAEARERAAAEARERAERAAAEARERANA------EAREKEARERASVARTE 644
           +   V+R +AE+ + +A    E   +      ++  +      +  EK   +R  + + +
Sbjct: 204 KEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQ 263

Query: 645 AEALQRAERAAVQRAASEARERAAAEARE 673
              L    +   Q      ++ +     E
Sbjct: 264 ERTLALKLQEQEQLLKEGFQKESRIMKNE 292

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 12/143 (8%), Positives = 42/143 (29%)

Query: 462 FRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLERERE 521
           F    +  +++ ++  R     +   +     +++      +  Q    +E+       +
Sbjct: 153 FVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVK 212

Query: 522 REREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDK 581
            E  +   +     + K      +KER       +   +   +R       +   A   +
Sbjct: 213 AESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQ 272

Query: 582 ANAAARERAERAAVQRAQAEARE 604
                 +   +   +  + E ++
Sbjct: 273 EQEQLLKEGFQKESRIMKNEIQD 295

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	914
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.86
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	98.66
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	98.42
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	98.42
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	98.3
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	98.26
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	97.99
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	97.92

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=2.2e-22  Score=162.46  Aligned_cols=93  Identities=43%  Similarity=0.794  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf             75799999873267751889986101004899-99633665432235788999885443137985356797868899999
Q 002508          817 ETLDVEIKRWAAGKEGNIRALLATMQYVLWPE-SGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAE  895 (914)
Q Consensus       817 d~id~ki~~W~~GKe~NiRaLLstL~~VLW~~-~~Wk~v~l~~L~~~~~VKkaYrKA~l~vHPDKl~~~g~~~eqk~iAe  895 (914)
                      |.|+.+|..|+.|+++|||+||+|||.|||++ ..|++|||++++++.+||++||++++.+||||++..+    ...+|+
T Consensus         1 d~~~~~i~~W~~~~~~~ir~lL~~l~~vl~~~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~----~~~~a~   76 (98)
T d1nz6a_           1 DPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQP----YEQYAK   76 (98)
T ss_dssp             CHHHHHHHHHHTTTTTCHHHHHTTGGGTSCTTCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTST----THHHHH
T ss_pred             CHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHH----HHHHHH
T ss_conf             9299999999814556399999866664177656885568776689999999999999986644489808----898889


Q ss_pred             HHHHHHHHHHHHHHHCCC
Q ss_conf             999999999999410279
Q 002508          896 KVFDLLKEAWNKFNSEEL  913 (914)
Q Consensus       896 ~vF~~LneAwe~F~~~e~  913 (914)
                      .+|..|++||++|++.+.
T Consensus        77 ~~f~~I~~Ay~~L~d~~~   94 (98)
T d1nz6a_          77 MIFMELNDAWSEFENQGQ   94 (98)
T ss_dssp             HHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHCCHHH
T ss_conf             999999999999789977

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.66  E-value=1.9e-08  Score=70.10  Aligned_cols=61  Identities=21%  Similarity=0.308  Sum_probs=54.2

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             63366543223578899988544313798535679786889999999999999999941027
Q 002508          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       851 Wk~v~l~~L~~~~~VKkaYrKA~l~vHPDKl~~~g~~~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      |.-|+|...++..+||++|+++++++||||+... .+...+..++.+|..|++||++|.+.+
T Consensus        19 Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~-~~~~~~~~a~~~f~~I~~Ay~vL~d~~   79 (94)
T d1wjza_          19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSAD-VPAGTMEECMQKFIEIDQAWKILGNEE   79 (94)
T ss_dssp             HHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTT-CCHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred             HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf             9883999995999999999999987103213453-138888888999999999999949999

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1e-07  Score=65.17  Aligned_cols=57  Identities=26%  Similarity=0.324  Sum_probs=47.8

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             633665432235788999885443137985356797868899999999999999999410279
Q 002508          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEEL  913 (914)
Q Consensus       851 Wk~v~l~~L~~~~~VKkaYrKA~l~vHPDKl~~~g~~~eqk~iAe~vF~~LneAwe~F~~~e~  913 (914)
                      |+-|++..-++..+||++||++++.+||||++..      ...|+.+|..|++||+.+++...
T Consensus        19 y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~------~~~a~~~f~~i~~Ay~~L~~~~~   75 (88)
T d1iura_          19 TSVVEQAWKLPESERKKIIRRLYLKWHPDKNPEN------HDIANEVFKHLQNEINRLEKQAF   75 (88)
T ss_dssp             HHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSC------HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9995998898999999999999998650014100------26899999999999999988988

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=2e-07  Score=63.27  Aligned_cols=55  Identities=22%  Similarity=0.460  Sum_probs=48.2

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             63366543223578899988544313798535679786889999999999999999941027
Q 002508          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       851 Wk~v~l~~L~~~~~VKkaYrKA~l~vHPDKl~~~g~~~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      |.-|||..-++..+||++|+++++.+||||++..  .     .++..|..|++||++|.+.+
T Consensus         6 Y~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~--~-----~~~~~f~~i~~Ay~vL~d~~   60 (75)
T d1xbla_           6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD--K-----EAEAKFKEIKEAYEVLTDSQ   60 (75)
T ss_dssp             TTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTT--C-----HHHHHHHHHHHHHHHTTSSH
T ss_pred             HHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC--H-----HHHHHHHHHHHHHHHCCCHH
T ss_conf             9980989996999999999999865023006897--1-----79999999988897028899

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=98.30  E-value=1.5e-07  Score=64.00  Aligned_cols=51  Identities=18%  Similarity=0.267  Sum_probs=40.5

Q ss_pred             CCCCCCCCCC--CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             6336654322--3578899988544313798535679786889999999999999999941027
Q 002508          851 WQPVSLTDLI--TAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       851 Wk~v~l~~L~--~~~~VKkaYrKA~l~vHPDKl~~~g~~~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      |+-|||..-+  +..+||++||++++++||||++..           ..|..|++||++|.+.+
T Consensus        11 y~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~-----------e~F~~I~~AY~vLsd~~   63 (114)
T d1gh6a_          11 MDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE-----------EKMKKMNTLYKKMEDGV   63 (114)
T ss_dssp             HHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTT-----------TTTHHHHHHHHHHHHHH
T ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHH-----------HHHHHHHHHHHHHCCHH
T ss_conf             999099988788999999999999987154301368-----------99999987988707888

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=7.1e-07  Score=59.59  Aligned_cols=59  Identities=15%  Similarity=0.249  Sum_probs=48.0

Q ss_pred             CCCCCCC--CCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             3366543--223578899988544313798535679786889999999999999999941027
Q 002508          852 QPVSLTD--LITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       852 k~v~l~~--L~~~~~VKkaYrKA~l~vHPDKl~~~g~~~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      .-+||..  -++..+||++|+++++.+||||+...  +...+.+|+..|..||+||+++++..
T Consensus         5 ~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~--~~~~~~~a~~~~~~i~~Ay~vL~dp~   65 (76)
T d1fpoa1           5 TLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASG--SQAEQLAAVQQSATINQAWQTLRHPL   65 (76)
T ss_dssp             HHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTS--CHHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred             HHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf             88799999998999999999999998482004421--38999989999999999999919999

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=97.99  E-value=2.3e-06  Score=56.26  Aligned_cols=49  Identities=22%  Similarity=0.492  Sum_probs=38.9

Q ss_pred             CCCCCCC--CCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             3366543--22357889998854431379853567978688999999999999999994102
Q 002508          852 QPVSLTD--LITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE  911 (914)
Q Consensus       852 k~v~l~~--L~~~~~VKkaYrKA~l~vHPDKl~~~g~~~eqk~iAe~vF~~LneAwe~F~~~  911 (914)
                      .-|||..  -.+..+||++|+++++.+||||..    +       ...|..||+||++|.+.
T Consensus        15 ~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g----~-------~e~~~~in~Ay~~L~d~   65 (79)
T d1fafa_          15 ELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG----S-------HALMQELNSLWGTFKTE   65 (79)
T ss_dssp             HHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC----C-------HHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC----C-------HHHHHHHHHHHHHHCCH
T ss_conf             990999788989999999999999986724388----8-------99999999999997789

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=3.7e-06  Score=54.87  Aligned_cols=54  Identities=28%  Similarity=0.492  Sum_probs=46.0

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             63366543223578899988544313798535679786889999999999999999941027
Q 002508          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE  912 (914)
Q Consensus       851 Wk~v~l~~L~~~~~VKkaYrKA~l~vHPDKl~~~g~~~eqk~iAe~vF~~LneAwe~F~~~e  912 (914)
                      |.-|+|..-++..+|+++|+++++.+|||+....        .+...|..|++||++|.+.+
T Consensus         6 Y~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~--------~~~~~~~~i~~Ay~vLsdp~   59 (77)
T d1hdja_           6 YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP--------GAEEKFKEIAEAYDVLSDPR   59 (77)
T ss_dssp             HHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCT--------THHHHHHHHHHHHHHTTCHH
T ss_pred             HHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCH--------HHHHHHHHHHHHHHHHCCHH
T ss_conf             9885999995999999999999987461013446--------69999999999998856888