Citrus Sinensis ID: 002515

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910---
MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLVQYWSSPMESQELFLS
ccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccEEEEccHHHHHHcHHHHHHHHHHccccEEEEcccccHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEccccHHHcccccccccccccccccccHHHHHHHHHHHccccccEEEcccccEEccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHccccEEEEccEEEEEEcccccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccEEEcccccccccccccccEEccHHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccEEEEEccccHHHHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
ccccEEEEEEEEEEccccEEEEEccccHHHHHHHHHHHHHHccccEEEEEEHHHHHHHHHHHHHHHHHHHccEEEEEEccccHHHHHHHHcccEEEcccccccHHHHHHHHcccHHHHHHcccccccEEEEEcccEEEEccccccEEEEccccccHHHHHHHHHHHHHHcccccEEEEcccccEEEcHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccEEEEccEEEEEEcccccccccccccccHHHHHHHHccccEccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccEEEEcccccccccccccEEEccHHHHHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHHHccccccEEcccccHHHHHHHHHHHHcccccEEEEEccccccccEEEcccHHHHHHHHHHHccccEEEccccccccccccccccccccccccccccEccccHHHHHHHccHHHHHHHHHcccHHcccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccEHHcHccccccccccccccEEEEEccHHHHHHHccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEcc
mrhfdvqiiggavlhdgsiaemktgeGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGliqrgmipeerrsnyrcditytnnselgfDYLRDNLAANseqlvmrwpkpfhfaIVDEVDsvlidegrnpllisgeaskdvaryPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETndlwdendpWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLypklsgmtgtaKTEEKEFLKMFQMpvievptnlpnirvdlpiqSFATARGKWEYARQEVESMFRLgrpvlvgstsvENSEYLSDLLKqqgiphnvlnarpkYAAREAETVAQAGRKYAITISTnmagrgtdiilggnPKMLAKKIIEDRLLLLLTREALNvevddktsspkvlseIKLGSSSLALLAKAALLAKYVGkaegkswtYQEAKSFFSESVEMSQSMNLKELQKLIDkqsamyplgptVALTYLSVLKDCEVHCsnegsevkrlgglhvigtSLHESRRIDNqlrgragrqgdpgstRFMVSLQDEMFQKFSFDTSWAVDLISRitndedmpieGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIifgnvdplkhprYWSLDKLLKEFIAIAGKILDdlfagisgDTLLKSIEelpelnsidinnfyfpdlpkppnlfrgirrKSSSLKRWLAICSddltkngryRATTNLLRKYLGDILIASYLNVVqesryddvYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVnvrsfghrnpleeykidgCRFFISMLSATRRLTVESLVQYwsspmesqelfls
mrhfdvqiiggavlhdgsiaEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSvgliqrgmipeerrsnyrCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLlisgeaskdvaRYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGkaliineltgrveekrrWSEGIHQAVeakeglkiqADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAItistnmagrgtdIILGGNPKMLAKKIIEDRLLLLLTREALnvevddktsspkvlSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNegsevkrlggLHVIgtslhesrridnqlrgragrqgdpgSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAIcsddltkngryrATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLVQywsspmesqelfls
MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRlllllTREALNVEVDDKTSSPKVLSEIklgssslallakaallakYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLVQYWSSPMESQELFLS
***FDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVD********LSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFF****************KLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSL************************FMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLVQYW************
MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIED************VEVDDKTSSPKVLSEIKLGSSSLAL******************************************L**********YPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLVQY*************
MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEV********VLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLVQYWSSP*********
*RHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNV***********LSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLVQYWSSPME*******
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MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLVQYWSSPMESQELFLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query913 2.2.26 [Sep-21-2011]
D8WUA41058 Protein translocase subun yes no 1.0 0.862 0.822 0.0
Q55709932 Protein translocase subun N/A no 0.884 0.866 0.431 0.0
Q5N2Q7948 Protein translocase subun yes no 0.890 0.857 0.433 0.0
Q55357948 Protein translocase subun yes no 0.890 0.857 0.433 0.0
Q10VW7936 Protein translocase subun yes no 0.897 0.875 0.433 0.0
Q8DHU4929 Protein translocase subun yes no 0.900 0.884 0.435 0.0
B7K818935 Protein translocase subun yes no 0.760 0.742 0.486 0.0
Q2JJ09957 Protein translocase subun yes no 0.766 0.731 0.492 0.0
Q7UZM1943 Protein translocase subun yes no 0.895 0.867 0.436 0.0
Q2JW99954 Protein translocase subun yes no 0.775 0.742 0.494 0.0
>sp|D8WUA4|SECA2_ARATH Protein translocase subunit SECA2, chloroplastic OS=Arabidopsis thaliana GN=SECA2 PE=2 SV=1 Back     alignment and function desciption
 Score = 1577 bits (4084), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 751/913 (82%), Positives = 833/913 (91%)

Query: 1    MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
            MRHFDVQIIGG VLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA
Sbjct: 146  MRHFDVQIIGGGVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 205

Query: 61   EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
            EWM RVHRFLGLSVGLIQRGM  EER+ NY CDITYTNNSELGFDYLRDNL +N EQLVM
Sbjct: 206  EWMGRVHRFLGLSVGLIQRGMKAEERKFNYSCDITYTNNSELGFDYLRDNLTSNREQLVM 265

Query: 121  RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
            RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA+++ ARYPVAAKVAELLV+  HY VELK
Sbjct: 266  RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEANENAARYPVAAKVAELLVKDSHYKVELK 325

Query: 181  NNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240
             NSVELTEEGI+LAEMALET DLWDENDPWARFVMNALKAKEFY+RDVQYIVR+GKALII
Sbjct: 326  ENSVELTEEGISLAEMALETGDLWDENDPWARFVMNALKAKEFYKRDVQYIVRDGKALII 385

Query: 241  NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 300
            NELTGRVE+KRRWSEG+HQAVEAKEGL+IQADS+VVAQITYQSLFKLYPKLSGMTGTAKT
Sbjct: 386  NELTGRVEDKRRWSEGVHQAVEAKEGLEIQADSIVVAQITYQSLFKLYPKLSGMTGTAKT 445

Query: 301  EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGS 360
            EEKEFLKMFQ+PVIEVPTNL NIR+DLPIQ+FATARGKWE+ R+EVE MF  GRPVLVG+
Sbjct: 446  EEKEFLKMFQIPVIEVPTNLSNIRIDLPIQAFATARGKWEHVRREVEDMFGQGRPVLVGT 505

Query: 361  TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420
            TSVENSEYLS+LLK+ GIPHNVLNARPKYAAREA+ +AQAGRKYAITISTNMAGRGTDII
Sbjct: 506  TSVENSEYLSELLKEWGIPHNVLNARPKYAAREADFIAQAGRKYAITISTNMAGRGTDII 565

Query: 421  LGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLA 480
            LGGNPKMLA++IIED +L  LT E L   +DD   S KVLS+IK+G SSLALLA+A+L+A
Sbjct: 566  LGGNPKMLAREIIEDSILSYLTSEVLADNIDDDELSQKVLSKIKVGPSSLALLARASLMA 625

Query: 481  KYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVL 540
            KYVGK+E KSWT ++AKS  +ES+E SQ+M+  ELQ LI++QS MYPLGP +AL YLSVL
Sbjct: 626  KYVGKSESKSWTRKKAKSVVTESLEKSQTMDPMELQNLINEQSEMYPLGPAIALAYLSVL 685

Query: 541  KDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM 600
            KDCE HC +EGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFM+SLQDEM
Sbjct: 686  KDCEAHCLHEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMISLQDEM 745

Query: 601  FQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVL 660
            FQKF+FDT WAV LIS+ITNDED+PIEGD IV+QLL LQI+AEKY+FGIRKSLVEFDEVL
Sbjct: 746  FQKFNFDTEWAVRLISKITNDEDLPIEGDTIVKQLLALQINAEKYFFGIRKSLVEFDEVL 805

Query: 661  EVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEF 720
            EVQRKHVYDLRQ +LTG NESCSQ IFQYMQAVVDEI+ GN +P KHPRYWSL KLLKEF
Sbjct: 806  EVQRKHVYDLRQLLLTGENESCSQHIFQYMQAVVDEIVVGNSNPQKHPRYWSLAKLLKEF 865

Query: 721  IAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSL 780
            +AI+G +LD+ F+GI+ +T+L+S+E L E +SI++ +   P LPKPPN FRGIRRK+SSL
Sbjct: 866  MAISGNLLDESFSGITEETMLQSLENLHEGSSIEMEDLSLPHLPKPPNAFRGIRRKNSSL 925

Query: 781  KRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVK 840
            +RWL ICSD+LT +G YR   NLLRK+LGD LIASYLNVVQES +DD Y+KE+ERAVL+K
Sbjct: 926  RRWLDICSDNLTGSGSYRTLINLLRKFLGDYLIASYLNVVQESGFDDGYIKEIERAVLLK 985

Query: 841  TLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLVQY 900
            TLDC+WRDHL+NMN+LSSAVNVRSF HRNPLEEYKIDGCRFFISMLSATRRLTVES++QY
Sbjct: 986  TLDCYWRDHLVNMNKLSSAVNVRSFAHRNPLEEYKIDGCRFFISMLSATRRLTVESILQY 1045

Query: 901  WSSPMESQELFLS 913
            WSSPMESQELF+S
Sbjct: 1046 WSSPMESQELFIS 1058
Involved in protein export. Probably interacts with other proteins to allow the postimport or conservative sorting pathway for inner membrane proteins in plastids. May have a central role in coupling the hydrolysis of ATP to the transfer of proteins across the membrane.
Arabidopsis thaliana (taxid: 3702)
>sp|Q55709|SECA_SYNY3 Protein translocase subunit SecA OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=secA PE=3 SV=1 Back     alignment and function description
>sp|Q5N2Q7|SECA_SYNP6 Protein translocase subunit SecA OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=secA PE=3 SV=1 Back     alignment and function description
>sp|Q55357|SECA_SYNE7 Protein translocase subunit SecA OS=Synechococcus elongatus (strain PCC 7942) GN=secA PE=3 SV=1 Back     alignment and function description
>sp|Q10VW7|SECA_TRIEI Protein translocase subunit SecA OS=Trichodesmium erythraeum (strain IMS101) GN=secA PE=3 SV=1 Back     alignment and function description
>sp|Q8DHU4|SECA_THEEB Protein translocase subunit SecA OS=Thermosynechococcus elongatus (strain BP-1) GN=secA PE=3 SV=1 Back     alignment and function description
>sp|B7K818|SECA_CYAP7 Protein translocase subunit SecA OS=Cyanothece sp. (strain PCC 7424) GN=secA PE=3 SV=1 Back     alignment and function description
>sp|Q2JJ09|SECA_SYNJB Protein translocase subunit SecA OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=secA PE=3 SV=1 Back     alignment and function description
>sp|Q7UZM1|SECA_PROMP Protein translocase subunit SecA OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=secA PE=3 SV=1 Back     alignment and function description
>sp|Q2JW99|SECA_SYNJA Protein translocase subunit SecA OS=Synechococcus sp. (strain JA-3-3Ab) GN=secA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query913
302141769 1067 unnamed protein product [Vitis vinifera] 1.0 0.855 0.869 0.0
359492369 1817 PREDICTED: uncharacterized protein LOC10 1.0 0.502 0.869 0.0
224062991 1053 predicted protein [Populus trichocarpa] 0.995 0.863 0.861 0.0
255558580 1794 F-box and wd40 domain protein, putative 0.994 0.506 0.849 0.0
449457678 1057 PREDICTED: protein translocase subunit S 0.998 0.862 0.849 0.0
356518567 1815 PREDICTED: uncharacterized protein LOC10 1.0 0.503 0.835 0.0
334182752 1058 preprotein translocase secA-like protein 1.0 0.862 0.822 0.0
334182750 1805 preprotein translocase secA-like protein 1.0 0.505 0.822 0.0
240254134 1051 preprotein translocase secA-like protein 0.992 0.862 0.819 0.0
449523083878 PREDICTED: protein translocase subunit S 0.946 0.984 0.843 0.0
>gi|302141769|emb|CBI18972.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1656 bits (4288), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 794/913 (86%), Positives = 851/913 (93%)

Query: 1    MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
            MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA
Sbjct: 155  MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 214

Query: 61   EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
            EWM RVHRFLGLSVGLIQRGM  EERRSNY CDITYTNNSELGFDYLRDNLA  S QLVM
Sbjct: 215  EWMGRVHRFLGLSVGLIQRGMTSEERRSNYGCDITYTNNSELGFDYLRDNLAGTSGQLVM 274

Query: 121  RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
            RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKD ARYPVAAK+AELL++GLHY VELK
Sbjct: 275  RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARYPVAAKIAELLIRGLHYNVELK 334

Query: 181  NNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240
            +NSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRR+VQYIVRNGKALII
Sbjct: 335  DNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRNVQYIVRNGKALII 394

Query: 241  NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 300
            NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT
Sbjct: 395  NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 454

Query: 301  EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGS 360
            EEKEFLKMFQMPVIEVP NLPNIR DLPIQ+FATARGKWE  R+EVE MFR GRPVLVG+
Sbjct: 455  EEKEFLKMFQMPVIEVPPNLPNIRKDLPIQAFATARGKWENVREEVEYMFRQGRPVLVGT 514

Query: 361  TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420
            TSVENSEYLSDLLK++ IPHNVLNARPKYAAREAE VAQAGRK+AITISTNMAGRGTDII
Sbjct: 515  TSVENSEYLSDLLKERKIPHNVLNARPKYAAREAEIVAQAGRKFAITISTNMAGRGTDII 574

Query: 421  LGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLA 480
            LGGNPKMLAK++IED LL  LT+EA NVEVD + +S KVLS+IK+GS+SLALLAK AL+A
Sbjct: 575  LGGNPKMLAKEVIEDSLLSFLTQEAPNVEVDGEPTSQKVLSKIKIGSASLALLAKTALMA 634

Query: 481  KYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVL 540
            KYV K EGKSWTYQ+AKS  SESVEMSQS++ KEL+KL ++QS MYPLGPT+AL YLSVL
Sbjct: 635  KYVSKGEGKSWTYQKAKSMISESVEMSQSIDWKELEKLANEQSEMYPLGPTIALAYLSVL 694

Query: 541  KDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM 600
            KDCE HC +EGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM
Sbjct: 695  KDCEAHCLSEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM 754

Query: 601  FQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVL 660
            FQKF+FDT WAV LIS+ITNDED+PIEGDAIV+QLL LQI+AEKY+FGIRKSLVEFDEVL
Sbjct: 755  FQKFNFDTEWAVRLISKITNDEDIPIEGDAIVKQLLALQINAEKYFFGIRKSLVEFDEVL 814

Query: 661  EVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEF 720
            EVQRKHVYDLRQ ILTG  ESCSQ +FQYMQAVVDEI+FGNV+ LKHP  W+L KLLKEF
Sbjct: 815  EVQRKHVYDLRQLILTGDIESCSQHVFQYMQAVVDEIVFGNVNALKHPSKWNLGKLLKEF 874

Query: 721  IAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSL 780
            I I+G++LDD F GIS +TLLK++ +L EL+S+DINNFY P+LP PPN FRGIRRK+SSL
Sbjct: 875  IGISGRLLDDSFVGISEETLLKALAQLHELSSVDINNFYLPNLPTPPNAFRGIRRKTSSL 934

Query: 781  KRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVK 840
            KRWLAICSDD  ++GRYRAT NLLRKYLGD LIASYL+ VQES YDD Y+KE+ERAVLVK
Sbjct: 935  KRWLAICSDDSARDGRYRATANLLRKYLGDFLIASYLDAVQESGYDDAYVKEIERAVLVK 994

Query: 841  TLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLVQY 900
            TLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESL++Y
Sbjct: 995  TLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLLRY 1054

Query: 901  WSSPMESQELFLS 913
            WSSPMESQELF+S
Sbjct: 1055 WSSPMESQELFVS 1067

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359492369|ref|XP_002284600.2| PREDICTED: uncharacterized protein LOC100248990 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224062991|ref|XP_002300961.1| predicted protein [Populus trichocarpa] gi|222842687|gb|EEE80234.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255558580|ref|XP_002520315.1| F-box and wd40 domain protein, putative [Ricinus communis] gi|223540534|gb|EEF42101.1| F-box and wd40 domain protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449457678|ref|XP_004146575.1| PREDICTED: protein translocase subunit SECA2, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356518567|ref|XP_003527950.1| PREDICTED: uncharacterized protein LOC100793437 [Glycine max] Back     alignment and taxonomy information
>gi|334182752|ref|NP_001185059.1| preprotein translocase secA-like protein [Arabidopsis thaliana] gi|363805541|sp|D8WUA4.1|SECA2_ARATH RecName: Full=Protein translocase subunit SECA2, chloroplastic; Flags: Precursor gi|298108793|gb|ADI56650.1| plastid SecA2 [Arabidopsis thaliana] gi|332192013|gb|AEE30134.1| preprotein translocase secA-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334182750|ref|NP_001185058.1| preprotein translocase secA-like protein [Arabidopsis thaliana] gi|332192012|gb|AEE30133.1| preprotein translocase secA-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|240254134|ref|NP_173584.5| preprotein translocase secA-like protein [Arabidopsis thaliana] gi|332192011|gb|AEE30132.1| preprotein translocase secA-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449523083|ref|XP_004168554.1| PREDICTED: protein translocase subunit SECA2, chloroplastic-like, partial [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query913
TIGR_CMR|CHY_0162874 CHY_0162 "preprotein transloca 0.464 0.485 0.548 5.2e-167
UNIPROTKB|P0A5Y8949 secA1 "Protein translocase sub 0.470 0.453 0.518 1.6e-157
TIGR_CMR|GSU_2050897 GSU_2050 "preprotein transloca 0.465 0.473 0.503 1.3e-149
TIGR_CMR|BA_5421835 BA_5421 "preprotein translocas 0.468 0.512 0.502 4.9e-148
TIGR_CMR|DET_0434952 DET_0434 "preprotein transloca 0.371 0.356 0.478 1.4e-147
TIGR_CMR|APH_1178873 APH_1178 "preprotein transloca 0.463 0.484 0.507 1.9e-140
UNIPROTKB|Q7WWK0838 secA "Protein translocase subu 0.452 0.492 0.473 3.9e-140
TIGR_CMR|SPO_0057901 SPO_0057 "preprotein transloca 0.465 0.471 0.490 1.7e-139
TIGR_CMR|CJE_1020862 CJE_1020 "preprotein transloca 0.453 0.480 0.482 1.2e-138
NCBI_NP|NP_357091.2902 secA "preprotein translocase s 0.468 0.474 0.490 5.6e-137
TIGR_CMR|CHY_0162 CHY_0162 "preprotein translocase, SecA subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
 Score = 1193 (425.0 bits), Expect = 5.2e-167, Sum P(3) = 5.2e-167
 Identities = 236/430 (54%), Positives = 319/430 (74%)

Query:     1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
             MRHFDVQ++GG VLH+G IAEMKTGEGKTLV+TL AYLNALTG GVH+VTVNDYLA+RDA
Sbjct:    79 MRHFDVQLMGGIVLHEGKIAEMKTGEGKTLVATLPAYLNALTGRGVHIVTVNDYLARRDA 138

Query:    61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
             EWM ++++FLGLSVGL+  GM   E+++ Y  DITY  N+E GFDYLRDN+A + +Q+V 
Sbjct:   139 EWMGKIYKFLGLSVGLVVHGMDYAEKKAAYLADITYGTNNEFGFDYLRDNMAIHPDQVVQ 198

Query:   121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
             R     ++AI+DEVDS+LIDE R PL+ISGEA K    Y   AK+ + LV G  YTV+ K
Sbjct:   199 R---ELYYAIIDEVDSILIDEARTPLIISGEAEKSTDLYYTFAKIVKQLVPGEDYTVDEK 255

Query:   181 NNSVELTEEGIALAEMALETNDLW-DENDPWARFVMNALKAKEFYRRDVQYIVRNGKALI 239
              ++V  TE GI   E  L   +L+ DE+      +  ALKA+   +RD  Y+V++G+ +I
Sbjct:   256 AHAVMPTEAGIHKVEKMLGIQNLYADEHMELTHHLNAALKAQALMKRDRDYVVKDGQVII 315

Query:   240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAK 299
             ++E TGR+   RR+S+G+HQA+EAKEG+KI+ ++  +A IT+Q+ F++Y KL+GMTGTA+
Sbjct:   316 VDEFTGRLMFGRRYSDGLHQAIEAKEGVKIEQETQTLATITFQNYFRMYEKLAGMTGTAE 375

Query:   300 TEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVG 359
             TEE EF K++ + V+ +PT+ P IR DLP   F T + K++   +EV    + G+P+L+G
Sbjct:   376 TEENEFRKIYNLSVVVIPTHKPMIRKDLPDVIFKTEKAKFKAIVEEVARRHQTGQPILIG 435

Query:   360 STSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDI 419
             + S+E SE LS++LK++GIPH VLNA  KY  +EAE VAQAGR  A+TI+TNMAGRGTDI
Sbjct:   436 TISIEKSEMLSEMLKKRGIPHQVLNA--KYHEKEAEIVAQAGRLGAVTIATNMAGRGTDI 493

Query:   420 ILGGNPKMLA 429
             +LGGNP+ LA
Sbjct:   494 LLGGNPEFLA 503
GO:0009306 "protein secretion" evidence=ISS
GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS
UNIPROTKB|P0A5Y8 secA1 "Protein translocase subunit SecA 1" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2050 GSU_2050 "preprotein translocase, SecA subunit" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5421 BA_5421 "preprotein translocase, SecA subunit" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0434 DET_0434 "preprotein translocase, SecA subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|APH_1178 APH_1178 "preprotein translocase, SecA subunit" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
UNIPROTKB|Q7WWK0 secA "Protein translocase subunit SecA" [Streptococcus parasanguinis (taxid:1318)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0057 SPO_0057 "preprotein translocase, SecA subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1020 CJE_1020 "preprotein translocase, SecA subunit" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
NCBI_NP|NP_357091.2 secA "preprotein translocase subunit SecA" [Agrobacterium fabrum str. C58 (taxid:176299)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q55357SECA_SYNE7No assigned EC number0.43340.89040.8575yesno
Q7UZM1SECA_PROMPNo assigned EC number0.43660.89590.8674yesno
Q5N2Q7SECA_SYNP6No assigned EC number0.43340.89040.8575yesno
B0JLJ4SECA_MICANNo assigned EC number0.41960.88600.8624yesno
A0T0G5SECA_PHATCNo assigned EC number0.39050.87400.9006yesno
B7K110SECA_CYAP8No assigned EC number0.43040.88710.8663yesno
C6E178SECA_GEOSMNo assigned EC number0.38590.86410.8244yesno
B2IUA9SECA_NOSP7No assigned EC number0.42950.88820.8720yesno
Q7V9M9SECA_PROMANo assigned EC number0.42900.90790.8763yesno
Q10VW7SECA_TRIEINo assigned EC number0.43310.89700.875yesno
Q8DHU4SECA_THEEBNo assigned EC number0.43590.90030.8848yesno
D8WUA4SECA2_ARATHNo assigned EC number0.82251.00.8629yesno
A2BZ24SECA_PROM5No assigned EC number0.42760.90250.8738yesno
B1X0K6SECA_CYAA5No assigned EC number0.42310.89590.8767yesno
B1XL02SECA_SYNP2No assigned EC number0.42020.88600.8624yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query913
CHL00122870 CHL00122, secA, preprotein translocase subunit Sec 0.0
PRK12902939 PRK12902, secA, preprotein translocase subunit Sec 0.0
PRK12904830 PRK12904, PRK12904, preprotein translocase subunit 0.0
TIGR00963745 TIGR00963, secA, preprotein translocase, SecA subu 0.0
COG0653822 COG0653, SecA, Preprotein translocase subunit SecA 0.0
PRK12906796 PRK12906, secA, preprotein translocase subunit Sec 0.0
smart00957380 smart00957, SecA_DEAD, SecA DEAD-like domain 0.0
PRK09200790 PRK09200, PRK09200, preprotein translocase subunit 0.0
PRK12903925 PRK12903, secA, preprotein translocase subunit Sec 1e-174
PRK12898656 PRK12898, secA, preprotein translocase subunit Sec 1e-171
pfam07517381 pfam07517, SecA_DEAD, SecA DEAD-like domain 1e-171
TIGR03714762 TIGR03714, secA2, accessory Sec system translocase 1e-147
PRK13103913 PRK13103, secA, preprotein translocase subunit Sec 1e-141
PRK12326764 PRK12326, PRK12326, preprotein translocase subunit 1e-134
PRK13107908 PRK13107, PRK13107, preprotein translocase subunit 1e-132
PRK13104896 PRK13104, secA, preprotein translocase subunit Sec 1e-127
TIGR04221762 TIGR04221, SecA2_Mycobac, accessory Sec system tra 1e-121
PRK129011112 PRK12901, secA, preprotein translocase subunit Sec 7e-74
PRK129001025 PRK12900, secA, preprotein translocase subunit Sec 3e-67
PRK129011112 PRK12901, secA, preprotein translocase subunit Sec 9e-65
PRK129001025 PRK12900, secA, preprotein translocase subunit Sec 5e-63
PRK12899970 PRK12899, secA, preprotein translocase subunit Sec 4e-61
PRK12904830 PRK12904, PRK12904, preprotein translocase subunit 6e-56
PRK12899970 PRK12899, secA, preprotein translocase subunit Sec 6e-53
TIGR00963745 TIGR00963, secA, preprotein translocase, SecA subu 1e-52
PRK12906796 PRK12906, secA, preprotein translocase subunit Sec 1e-47
pfam01043113 pfam01043, SecA_PP_bind, SecA preprotein cross-lin 7e-44
smart00958114 smart00958, SecA_PP_bind, SecA preprotein cross-li 6e-40
pfam07516213 pfam07516, SecA_SW, SecA Wing and Scaffold domain 1e-36
PRK09200790 PRK09200, PRK09200, preprotein translocase subunit 5e-36
COG0653822 COG0653, SecA, Preprotein translocase subunit SecA 2e-34
PRK12903 925 PRK12903, secA, preprotein translocase subunit Sec 2e-34
PRK13103913 PRK13103, secA, preprotein translocase subunit Sec 2e-34
PRK13107908 PRK13107, PRK13107, preprotein translocase subunit 4e-32
PRK129011112 PRK12901, secA, preprotein translocase subunit Sec 4e-26
PRK129001025 PRK12900, secA, preprotein translocase subunit Sec 8e-25
PRK13104896 PRK13104, secA, preprotein translocase subunit Sec 2e-23
TIGR03714762 TIGR03714, secA2, accessory Sec system translocase 5e-23
PRK12898656 PRK12898, secA, preprotein translocase subunit Sec 7e-22
PRK12899970 PRK12899, secA, preprotein translocase subunit Sec 2e-21
PRK12326764 PRK12326, PRK12326, preprotein translocase subunit 6e-21
TIGR04221762 TIGR04221, SecA2_Mycobac, accessory Sec system tra 3e-17
PRK12902939 PRK12902, secA, preprotein translocase subunit Sec 8e-10
PRK129001025 PRK12900, secA, preprotein translocase subunit Sec 2e-06
PRK12899970 PRK12899, secA, preprotein translocase subunit Sec 2e-06
PRK13104896 PRK13104, secA, preprotein translocase subunit Sec 8e-06
PRK129011112 PRK12901, secA, preprotein translocase subunit Sec 4e-05
>gnl|CDD|214371 CHL00122, secA, preprotein translocase subunit SecA; Validated Back     alignment and domain information 
 Score =  833 bits (2155), Expect = 0.0
 Identities = 376/898 (41%), Positives = 523/898 (58%), Gaps = 109/898 (12%)

Query: 1   MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
           +RHFDVQ+IGG VL+DG IAEMKTGEGKTLV+TL AYLNALTG+GVH+VTVNDYLA+RD 
Sbjct: 75  LRHFDVQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQ 134

Query: 61  EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
           EWM +++RFLGL+VGLIQ GM  EER+ NY  DITY  NSELGFDYLRDN+A +   +V 
Sbjct: 135 EWMGQIYRFLGLTVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQ 194

Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
           R   PF++ I+DEVDS+LIDE R PL+ISG++  ++ +Y VA ++A+ L + +HY V+ K
Sbjct: 195 R---PFNYCIIDEVDSILIDEARTPLIISGQSKTNIDKYIVADELAKYLEKNVHYEVDEK 251

Query: 181 NNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240
           N +V LTE+GI   E  L+  DL+  NDPW  +++NALKAKE + ++V YIVRN + +I+
Sbjct: 252 NKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIVRNNEIIIV 311

Query: 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 300
           +E TGR+   RRWS+G+HQA+EAKE L I+ ++  +A ITYQ+ F LYPKLSGMTGTAKT
Sbjct: 312 DEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKT 371

Query: 301 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGS 360
           EE EF K++ + V+ +PT+ P +R DLP   +     KW     E   M + GRP+L+G+
Sbjct: 372 EELEFEKIYNLEVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGT 431

Query: 361 TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420
           T++E SE LS LLK+  +PH +LNA+P+   RE+E VAQAGRK +ITI+TNMAGRGTDII
Sbjct: 432 TTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQAGRKGSITIATNMAGRGTDII 491

Query: 421 LGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAAL-L 479
           LGGNP+   KK + D LL   + E         T S   L+ +    + L  L+ +    
Sbjct: 492 LGGNPEFKLKKELYDLLLSYKSNE------KISTISQNFLNILNSLKNDLKFLSLSDFEN 545

Query: 480 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSV 539
            K + +A                      S+     Q  +                Y  +
Sbjct: 546 LKILNEAS-------------------EISIPKNSYQLSLRF-------------LYNEL 573

Query: 540 LKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDE 599
           L+  +     E   VK+LGGL+VIGT  HESRRIDNQLRGRAGRQGDPGS+RF +SL+D 
Sbjct: 574 LEKYKKLQEKEKKIVKKLGGLYVIGTERHESRRIDNQLRGRAGRQGDPGSSRFFLSLEDN 633

Query: 600 MFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEV 659
           + + F  D    +  + +  N +D P+E   + + L   Q   E+YY+  RK L E+D+V
Sbjct: 634 LLRIFGGD---KIQNLMQTLNLDDEPLESKLLSKSLDSAQKKVEEYYYDQRKQLFEYDQV 690

Query: 660 LEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKE 719
           L  QRK +Y  R+ IL   ++S    I  Y + V+D+II             S      +
Sbjct: 691 LNKQRKAIYSERRKILE--SQSLRDWILAYGEQVIDDII---------TFLKSRKNPNNK 739

Query: 720 FIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSS 779
           FI +  K  + L   +               N  D+N                    S  
Sbjct: 740 FINLINKFKELLKLPLC-------------FNKSDLNTLN-----------------SGE 769

Query: 780 LKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLV 839
           LK++L           ++  + +L   YL               +     M+E+ER++L+
Sbjct: 770 LKKFLY---------QQFWISYDLKELYL--------------EQIGTGLMRELERSLLL 806

Query: 840 KTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESL 897
           + +D  W++HL  M+ L  A+  RS+G ++PL EYK +    FI+M++  R L +  L
Sbjct: 807 QQIDKSWKEHLQKMSLLREAIGWRSYGQKDPLIEYKNEAFNLFINMINHIRHLVIYDL 864

Length = 870
>gnl|CDD|237257 PRK12902, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|237259 PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|233212 TIGR00963, secA, preprotein translocase, SecA subunit Back     alignment and domain information
>gnl|CDD|223726 COG0653, SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|237260 PRK12906, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|214937 smart00957, SecA_DEAD, SecA DEAD-like domain Back     alignment and domain information
>gnl|CDD|236408 PRK09200, PRK09200, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|237253 PRK12898, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|219445 pfam07517, SecA_DEAD, SecA DEAD-like domain Back     alignment and domain information
>gnl|CDD|163426 TIGR03714, secA2, accessory Sec system translocase SecA2 Back     alignment and domain information
>gnl|CDD|183859 PRK13103, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|237060 PRK12326, PRK12326, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|183863 PRK13107, PRK13107, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|183860 PRK13104, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|234506 TIGR04221, SecA2_Mycobac, accessory Sec system translocase SecA2, Actinobacterial type Back     alignment and domain information
>gnl|CDD|237256 PRK12901, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|237255 PRK12900, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|237256 PRK12901, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|237255 PRK12900, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|237254 PRK12899, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|237259 PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|237254 PRK12899, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|233212 TIGR00963, secA, preprotein translocase, SecA subunit Back     alignment and domain information
>gnl|CDD|237260 PRK12906, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|144583 pfam01043, SecA_PP_bind, SecA preprotein cross-linking domain Back     alignment and domain information
>gnl|CDD|214938 smart00958, SecA_PP_bind, SecA preprotein cross-linking domain Back     alignment and domain information
>gnl|CDD|219444 pfam07516, SecA_SW, SecA Wing and Scaffold domain Back     alignment and domain information
>gnl|CDD|236408 PRK09200, PRK09200, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|223726 COG0653, SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|183859 PRK13103, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|183863 PRK13107, PRK13107, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|237256 PRK12901, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|237255 PRK12900, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|183860 PRK13104, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|163426 TIGR03714, secA2, accessory Sec system translocase SecA2 Back     alignment and domain information
>gnl|CDD|237253 PRK12898, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|237254 PRK12899, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|237060 PRK12326, PRK12326, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|234506 TIGR04221, SecA2_Mycobac, accessory Sec system translocase SecA2, Actinobacterial type Back     alignment and domain information
>gnl|CDD|237257 PRK12902, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|237255 PRK12900, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|237254 PRK12899, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|183860 PRK13104, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|237256 PRK12901, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 913
PRK12902939 secA preprotein translocase subunit SecA; Reviewed 100.0
CHL00122870 secA preprotein translocase subunit SecA; Validate 100.0
PRK129011112 secA preprotein translocase subunit SecA; Reviewed 100.0
PRK12903 925 secA preprotein translocase subunit SecA; Reviewed 100.0
PRK13103913 secA preprotein translocase subunit SecA; Reviewed 100.0
PRK13107908 preprotein translocase subunit SecA; Reviewed 100.0
PRK13104896 secA preprotein translocase subunit SecA; Reviewed 100.0
PRK12904830 preprotein translocase subunit SecA; Reviewed 100.0
PRK12326764 preprotein translocase subunit SecA; Reviewed 100.0
PRK129001025 secA preprotein translocase subunit SecA; Reviewed 100.0
COG0653822 SecA Preprotein translocase subunit SecA (ATPase, 100.0
PRK12906796 secA preprotein translocase subunit SecA; Reviewed 100.0
PRK12899970 secA preprotein translocase subunit SecA; Reviewed 100.0
TIGR00963745 secA preprotein translocase, SecA subunit. The pro 100.0
PRK09200790 preprotein translocase subunit SecA; Reviewed 100.0
TIGR03714762 secA2 accessory Sec system translocase SecA2. Memb 100.0
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 100.0
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 100.0
PF07516214 SecA_SW: SecA Wing and Scaffold domain; InterPro: 100.0
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 99.97
PF01043113 SecA_PP_bind: SecA preprotein cross-linking domain 99.97
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 99.95
PTZ00110545 helicase; Provisional 99.95
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 99.94
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 99.94
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 99.94
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 99.94
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 99.94
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 99.93
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 99.93
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 99.93
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 99.93
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 99.92
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 99.91
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 99.9
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 99.9
TIGR03817742 DECH_helic helicase/secretion neighborhood putativ 99.9
PTZ00424401 helicase 45; Provisional 99.9
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 99.9
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 99.89
KOG0338691 consensus ATP-dependent RNA helicase [RNA processi 99.89
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 99.89
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 99.88
KOG0343758 consensus RNA Helicase [RNA processing and modific 99.88
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 99.88
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 99.87
PLN031371195 ATP-dependent DNA helicase; Q4-like; Provisional 99.87
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 99.87
KOG0347731 consensus RNA helicase [RNA processing and modific 99.87
PRK13767876 ATP-dependent helicase; Provisional 99.86
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 99.86
KOG0339731 consensus ATP-dependent RNA helicase [RNA processi 99.85
TIGR00643630 recG ATP-dependent DNA helicase RecG. 99.85
KOG0334997 consensus RNA helicase [RNA processing and modific 99.84
PRK106891147 transcription-repair coupling factor; Provisional 99.84
PRK00254720 ski2-like helicase; Provisional 99.81
PRK02362737 ski2-like helicase; Provisional 99.8
PRK01172674 ski2-like helicase; Provisional 99.8
PHA02558501 uvsW UvsW helicase; Provisional 99.8
PRK14701 1638 reverse gyrase; Provisional 99.79
TIGR02621844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 99.78
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 99.78
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 99.74
KOG0348708 consensus ATP-dependent RNA helicase [RNA processi 99.74
PRK09401 1176 reverse gyrase; Reviewed 99.73
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 99.72
PRK13766773 Hef nuclease; Provisional 99.72
PHA02653675 RNA helicase NPH-II; Provisional 99.72
TIGR01970819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 99.71
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 99.71
PRK11664812 ATP-dependent RNA helicase HrpB; Provisional 99.71
KOG0346569 consensus RNA helicase [RNA processing and modific 99.7
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 99.68
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 99.68
KOG4284 980 consensus DEAD box protein [Transcription] 99.68
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 99.67
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 99.67
COG1201814 Lhr Lhr-like helicases [General function predictio 99.65
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 99.6
KOG0337529 consensus ATP-dependent RNA helicase [RNA processi 99.6
COG1200677 RecG RecG-like helicase [DNA replication, recombin 99.59
PRK09694878 helicase Cas3; Provisional 99.58
COG1202830 Superfamily II helicase, archaea-specific [General 99.53
PRK04914956 ATP-dependent helicase HepA; Validated 99.53
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 99.53
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 99.51
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 99.51
COG0514590 RecQ Superfamily II DNA helicase [DNA replication, 99.5
COG1205851 Distinct helicase family with a unique C-terminal 99.5
KOG0327397 consensus Translation initiation factor 4F, helica 99.5
PRK05580679 primosome assembly protein PriA; Validated 99.49
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.44
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 99.39
COG1204766 Superfamily II helicase [General function predicti 99.37
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.32
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 99.28
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 99.27
KOG0329387 consensus ATP-dependent RNA helicase [RNA processi 99.24
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 99.22
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 99.22
PRK114481123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.13
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.13
PLN031421033 Probable chromatin-remodeling complex ATPase chain 99.02
KOG0352641 consensus ATP-dependent DNA helicase [Replication, 99.01
KOG0351941 consensus ATP-dependent DNA helicase [Replication, 99.0
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 98.92
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 98.89
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 98.8
PRK05298652 excinuclease ABC subunit B; Provisional 98.77
smart00487201 DEXDc DEAD-like helicases superfamily. 98.76
COG4098441 comFA Superfamily II DNA/RNA helicase required for 98.74
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 98.71
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 98.7
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 98.65
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 98.62
KOG0353695 consensus ATP-dependent DNA helicase [General func 98.58
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 98.44
COG1643845 HrpA HrpA-like helicases [DNA replication, recombi 98.32
PF04851184 ResIII: Type III restriction enzyme, res subunit; 98.26
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 98.26
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 98.09
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 98.04
KOG0922674 consensus DEAH-box RNA helicase [RNA processing an 98.01
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 98.01
KOG09241042 consensus mRNA splicing factor ATP-dependent RNA h 97.9
KOG0354746 consensus DEAD-box like helicase [General function 97.89
COG11971139 Mfd Transcription-repair coupling factor (superfam 97.88
COG4096875 HsdR Type I site-specific restriction-modification 97.82
KOG0923902 consensus mRNA splicing factor ATP-dependent RNA h 97.8
smart0049082 HELICc helicase superfamily c-terminal domain. 97.78
KOG0920924 consensus ATP-dependent RNA helicase A [RNA proces 97.19
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 97.19
COG1198730 PriA Primosomal protein N' (replication factor Y) 97.01
KOG0385971 consensus Chromatin remodeling complex WSTF-ISWI, 96.99
KOG09501008 consensus DNA polymerase theta/eta, DEAD-box super 96.98
KOG0387923 consensus Transcription-coupled repair protein CSB 96.97
smart00489289 DEXDc3 DEAD-like helicases superfamily. 96.95
smart00488289 DEXDc2 DEAD-like helicases superfamily. 96.95
KOG09481041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 96.88
COG45811041 Superfamily II RNA helicase [DNA replication, reco 96.84
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 96.09
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 95.89
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 95.71
PRK14873665 primosome assembly protein PriA; Provisional 95.44
KOG0384 1373 consensus Chromodomain-helicase DNA-binding protei 95.23
KOG09471248 consensus Cytoplasmic exosomal RNA helicase SKI2, 95.03
KOG1000689 consensus Chromatin remodeling protein HARP/SMARCA 94.58
PRK11773721 uvrD DNA-dependent helicase II; Provisional 94.2
COG0556663 UvrB Helicase subunit of the DNA excision repair c 93.87
TIGR01073726 pcrA ATP-dependent DNA helicase PcrA. Designed to 93.3
PF12340229 DUF3638: Protein of unknown function (DUF3638); In 93.19
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 93.08
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 92.6
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 92.44
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 92.44
TIGR01075715 uvrD DNA helicase II. Designed to identify uvrD me 91.82
PRK10536262 hypothetical protein; Provisional 91.26
KOG1123776 consensus RNA polymerase II transcription initiati 91.16
PRK15483986 type III restriction-modification system StyLTI en 91.11
COG0610962 Type I site-specific restriction-modification syst 90.76
PF02399824 Herpes_ori_bp: Origin of replication binding prote 89.47
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 89.14
TIGR00376637 DNA helicase, putative. The gene product may repre 88.38
KOG09511674 consensus RNA helicase BRR2, DEAD-box superfamily 87.67
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 87.41
TIGR00064272 ftsY signal recognition particle-docking protein F 87.36
KOG0925699 consensus mRNA splicing factor ATP-dependent RNA h 87.03
TIGR01425429 SRP54_euk signal recognition particle protein SRP5 87.0
PF1324576 AAA_19: Part of AAA domain 86.69
COG0556663 UvrB Helicase subunit of the DNA excision repair c 86.48
PRK00771437 signal recognition particle protein Srp54; Provisi 86.45
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 86.08
KOG09491330 consensus Predicted helicase, DEAD-box superfamily 85.59
PRK14974336 cell division protein FtsY; Provisional 84.9
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 84.83
TIGR03499282 FlhF flagellar biosynthetic protein FlhF. 84.81
cd03115173 SRP The signal recognition particle (SRP) mediates 84.58
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 84.27
PRK04296190 thymidine kinase; Provisional 84.06
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 83.57
PF00580315 UvrD-helicase: UvrD/REP helicase N-terminal domain 83.29
PRK10416318 signal recognition particle-docking protein FtsY; 83.15
KOG1803649 consensus DNA helicase [Replication, recombination 82.81
PRK10867433 signal recognition particle protein; Provisional 82.45
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 82.03
cd01124187 KaiC KaiC is a circadian clock protein primarily f 81.22
COG2109198 BtuR ATP:corrinoid adenosyltransferase [Coenzyme m 81.15
PRK10875615 recD exonuclease V subunit alpha; Provisional 81.07
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 80.7
KOG1802935 consensus RNA helicase nonsense mRNA reducing fact 80.54
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 80.53
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 80.31
smart00382148 AAA ATPases associated with a variety of cellular 80.18
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=2.5e-225  Score=1962.88  Aligned_cols=820  Identities=49%  Similarity=0.784  Sum_probs=724.8

Q ss_pred             CCCchhHHHHHHHHhcCCeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002515            1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG   80 (913)
Q Consensus         1 ~rp~dvQl~g~l~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~   80 (913)
                      |||||||++||++||+|+||||+||||||||++||+|++||+|++|||||+|||||+||++||+|||+|||||||++.++
T Consensus        84 ~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~  163 (939)
T PRK12902         84 MRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQD  163 (939)
T ss_pred             CCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCCCCccchH
Q 002515           81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP  160 (913)
Q Consensus        81 ~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~y~  160 (913)
                      +++++|+.+|.||||||||++||||||||||+.+.++.++|   +++|||||||||||||||||||||||+...+...|.
T Consensus       164 ~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR---~~~faIVDEvDSILIDEArTPLIISg~~~~~~~~y~  240 (939)
T PRK12902        164 MSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQR---PFNYCVIDEVDSILIDEARTPLIISGQVERPQEKYQ  240 (939)
T ss_pred             CChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccC---ccceEEEecccceeeccCCCcccccCCCccchHHHH
Confidence            99999999999999999999999999999999988889998   999999999999999999999999999998889999


Q ss_pred             HHHHHHHHhcc------CCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCcceEEEC
Q 002515          161 VAAKVAELLVQ------GLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRN  234 (913)
Q Consensus       161 ~~~~~v~~l~~------~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~dYiV~d  234 (913)
                      .++.+++.|.+      +.||.+|++.++++||++|+.++|.++++.|||++.++|.+||.+||+|+++|++|+||||+|
T Consensus       241 ~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~~d~dYiV~d  320 (939)
T PRK12902        241 KAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFIKDVNYIVRN  320 (939)
T ss_pred             HHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHhcCCeEEEEC
Confidence            99999999988      779999999999999999999999999999999988899999999999999999999999999


Q ss_pred             CeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHHHhCCCeE
Q 002515          235 GKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVI  314 (913)
Q Consensus       235 g~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~iY~l~vv  314 (913)
                      |+|+|||++|||+|+||+||+||||||||||||+|+++++|+|+|||||||++|++|+||||||++++.||+++||++|+
T Consensus       321 g~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv  400 (939)
T PRK12902        321 GEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFEKTYKLEVT  400 (939)
T ss_pred             CEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHHHHhCCcEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchhhHH
Q 002515          315 EVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREA  394 (913)
Q Consensus       315 ~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~Ea  394 (913)
                      .||||+|++|+|+||.||.|..+||.||+++|.++|++||||||||.||+.||.||++|.+.||||+||||++.|+++||
T Consensus       401 ~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA  480 (939)
T PRK12902        401 VIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREA  480 (939)
T ss_pred             EcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999766889999


Q ss_pred             HHHHhcCCCccEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHH
Q 002515          395 ETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLA  474 (913)
Q Consensus       395 ~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (913)
                      +||++||++|+||||||||||||||+|||||+++++..++..+.+......+....      +........++.++++. 
T Consensus       481 ~IIa~AG~~GaVTIATNMAGRGTDIkLgGn~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-  553 (939)
T PRK12902        481 EIVAQAGRKGAVTIATNMAGRGTDIILGGNSDYMARLKLREYLMPRLVKPEDDHKP------PVPLQRGLKGGQGFGPK-  553 (939)
T ss_pred             HHHHhcCCCCcEEEeccCCCCCcCEeeCCchhhhhhHHhhhhcccccccccccccc------ccccccccccccccccc-
Confidence            99999999999999999999999999999999999988754443332222111100      00000112244444433 


Q ss_pred             HHHHHHhhhccccCCchhhhhhhhh---hhhhhhhhhhhhHHHHHHH------------------HhhhccCCCCChhhH
Q 002515          475 KAALLAKYVGKAEGKSWTYQEAKSF---FSESVEMSQSMNLKELQKL------------------IDKQSAMYPLGPTVA  533 (913)
Q Consensus       475 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~  533 (913)
                               .+++.+.|+.+.+--+   +.+.+........-.+++.                  .+......+....++
T Consensus       554 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  624 (939)
T PRK12902        554 ---------AKKPKKTWKASSASIFPCELSEETEQLLKEAVDFAVKQYGDRSLPELELEDKIATAAEKAPTDDPVIQKLR  624 (939)
T ss_pred             ---------cccccccccccccccccccccchhhhhhhhhhhhhhhhhcccccccccchhhhhhhhhcccccchhhhhHH
Confidence                     4577888987765321   1111111111111111100                  011112344566789


Q ss_pred             HHHHHHhhhhhhcccccchhhhhcCceEEEeccCCCchhhHhhhhcccccCCCCCceeEEEeccchhhhhccCCchHHHH
Q 002515          534 LTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVD  613 (913)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhes~RiD~QLrGRagRQGdpGss~f~lSLeD~l~~~f~~~~~~~~~  613 (913)
                      .+|..++.+++..|.+++++|+++|||||||||||||||||||||||||||||||+|||||||||||||+||  ++++.+
T Consensus       625 ~~~~~~~~~~~~~~~~e~~~V~elGGL~VIGTERHESRRIDNQLRGRaGRQGDPGsSrFflSLEDdL~r~Fg--~dri~~  702 (939)
T PRK12902        625 EAYNRIKKEYEVVTSQEHDEVVEAGGLHVIGTERHESRRVDNQLRGRAGRQGDPGSTRFFLSLEDNLLRIFG--GDRVAG  702 (939)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHcCCCeEEecCccccchHHHHhhcccccCCCCCcceEEEEechHHHHHhC--cHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999  999999


Q ss_pred             HHhhcCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 002515          614 LISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAV  693 (913)
Q Consensus       614 ~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~  693 (913)
                      +|+++++++++||++++++++|++||++||++||++||++++||+|||.||++||++|++||++  +++.+.|.+|++++
T Consensus       703 ~~~~l~~~e~~~I~~~~i~k~ie~AQkkvE~~nf~iRK~ll~YD~Vln~QR~~IY~~R~~iL~~--~~~~~~i~~~~~~~  780 (939)
T PRK12902        703 LMNAFRVEEDMPIESGMLTRSLEGAQKKVETYYYDIRKQVFEYDEVMNNQRRAIYAERRRVLEG--RDLKEQVIGYGEKT  780 (939)
T ss_pred             HHHHcCCCCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999965  47999999999999


Q ss_pred             HHHHHHhcCCCCCCCCcCCHHHHHHHHHHHhccchhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCcccccc
Q 002515          694 VDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGI  773 (913)
Q Consensus       694 v~~iv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  773 (913)
                      |+++|+.+..+...+++|++++|...+...+  +...   .++++                              .    
T Consensus       781 i~~~v~~~~~~~~~~~~w~~~~l~~~l~~~~--~~~~---~~~~~------------------------------~----  821 (939)
T PRK12902        781 MDEIVEAYVNPDLPPEEWDLDQLVSKVKEFV--YLLE---DLKPE------------------------------D----  821 (939)
T ss_pred             HHHHHHHhcCCccChhhccHHHHHHHHHHHh--cChh---hcChH------------------------------h----
Confidence            9999999987766678999999987765321  0000   00000                              0    


Q ss_pred             ccccchhhhhhhhcccccccccccccchHHHHHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002515          774 RRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQES-RYDDVYMKEVERAVLVKTLDCFWRDHLIN  852 (913)
Q Consensus       774 ~~~~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~l~e~~~~~y~~k~~~~-~~~~~~~~~~eR~ilLk~ID~~W~eHLd~  852 (913)
                                            ......+++++++.+.+.+.|..|.... ..+++.++++||.++|++||.+|++||++
T Consensus       822 ----------------------~~~~~~~~l~~~l~~~~~~~y~~K~~~l~~~~~~~~~~~eR~i~L~~iD~~W~eHL~~  879 (939)
T PRK12902        822 ----------------------LEDLSVEELKAFLHEQLRIAYDLKEAQIDQIRPGLMREAERFFILQQIDTLWREHLQS  879 (939)
T ss_pred             ----------------------hccCCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                  0111346788899999999997664421 12678999999999999999999999999


Q ss_pred             HHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccCc
Q 002515          853 MNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLVQYWSSP  904 (913)
Q Consensus       853 Md~LRegI~LRsYgQKDPl~EYkkEaf~lF~~M~~~I~~~~v~~l~~~~~~~  904 (913)
                      |++||+|||||+||||||+.|||+|||++|+.|+.+|++++++++|+++.++
T Consensus       880 md~Lre~I~lR~ygQkdPl~EYk~Ea~~~F~~m~~~ir~~vv~~l~~~~~~~  931 (939)
T PRK12902        880 MDALRESVGLRGYGQKDPLIEYKNEGYEMFLEMMTNIRRNVVYSLFMFQPQP  931 (939)
T ss_pred             HHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeccC
Confidence            9999999999999999999999999999999999999999999999998443

>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>PF07516 SecA_SW: SecA Wing and Scaffold domain; InterPro: IPR011116 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF01043 SecA_PP_bind: SecA preprotein cross-linking domain; InterPro: IPR011130 The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>PRK11773 uvrD DNA-dependent helicase II; Provisional Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA Back     alignment and domain information
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>TIGR01075 uvrD DNA helicase II Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>TIGR00064 ftsY signal recognition particle-docking protein FtsY Back     alignment and domain information
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01425 SRP54_euk signal recognition particle protein SRP54 Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00771 signal recognition particle protein Srp54; Provisional Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>TIGR03499 FlhF flagellar biosynthetic protein FlhF Back     alignment and domain information
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA Back     alignment and domain information
>PRK10416 signal recognition particle-docking protein FtsY; Provisional Back     alignment and domain information
>KOG1803 consensus DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PRK10867 signal recognition particle protein; Provisional Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query913
1nkt_A922 Crystal Structure Of The Seca Protein Translocation 1e-125
1nkt_A922 Crystal Structure Of The Seca Protein Translocation 3e-37
3dl8_A779 Structure Of The Complex Of Aquifex Aeolicus Secyeg 1e-125
3dl8_A779 Structure Of The Complex Of Aquifex Aeolicus Secyeg 5e-26
2ibm_A780 A Novel Dimer Interface And Conformational Changes 1e-124
2ibm_A780 A Novel Dimer Interface And Conformational Changes 5e-26
1m6n_A802 Crystal Structure Of The Seca Translocation Atpase 1e-124
1m6n_A802 Crystal Structure Of The Seca Translocation Atpase 4e-26
3jv2_A783 Crystal Structure Of B. Subtilis Seca With Bound Pe 1e-124
3jv2_A783 Crystal Structure Of B. Subtilis Seca With Bound Pe 6e-26
1tf2_A844 Crystal Structure Of Seca:adp In An Open Conformati 1e-124
1tf2_A844 Crystal Structure Of Seca:adp In An Open Conformati 7e-26
3iqm_A802 Active Site Mutants Of B. Subtilis Seca Length = 80 1e-124
3iqm_A802 Active Site Mutants Of B. Subtilis Seca Length = 80 4e-26
3iqy_A841 Active Site Mutants Of B. Subtilis Seca Length = 84 1e-124
3iqy_A841 Active Site Mutants Of B. Subtilis Seca Length = 84 6e-26
2ipc_A997 Crystal Structure Of The Translocation Atpase Seca 1e-118
2ipc_A997 Crystal Structure Of The Translocation Atpase Seca 2e-33
2ipc_A997 Crystal Structure Of The Translocation Atpase Seca 7e-08
3din_A871 Crystal Structure Of The Protein-Translocation Comp 1e-114
3din_A871 Crystal Structure Of The Protein-Translocation Comp 2e-25
3jux_A822 Structure Of The Translocation Atpase Seca From The 1e-114
3jux_A822 Structure Of The Translocation Atpase Seca From The 2e-25
2fsf_A853 Escherichia Coli Seca, The Preprotein Translocase D 1e-114
2fsf_A853 Escherichia Coli Seca, The Preprotein Translocase D 2e-27
2vda_A828 Solution Structure Of The Seca-Signal Peptide Compl 1e-114
2vda_A828 Solution Structure Of The Seca-Signal Peptide Compl 3e-28
2fsg_A853 Complex Seca:atp From Escherichia Coli Length = 853 1e-110
2fsg_A853 Complex Seca:atp From Escherichia Coli Length = 853 2e-22
3bxz_A471 Crystal Structure Of The Isolated Dead Motor Domain 6e-49
3bxz_A471 Crystal Structure Of The Isolated Dead Motor Domain 8e-36
3bxz_A471 Crystal Structure Of The Isolated Dead Motor Domain 1e-14
>pdb|1NKT|A Chain A, Crystal Structure Of The Seca Protein Translocation Atpase From Mycobacterium Tuberculosis Complex With Adpbs Length = 922 Back     alignment and structure 
Iteration: 1

 Score =  446 bits (1147), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/436 (51%), Positives = 305/436 (69%), Gaps = 6/436 (1%)
Query: 2   RHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAE 61
           R FDVQ++G A LH G++AEMKTGEGKTL   L AYLNAL G GVH+VTVNDYLA+RD+E
Sbjct: 111 RPFDVQVMGAAALHLGNVAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSE 170
Query: 62  WMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMR 121
           WM RVHRFLGL VG+I   M P+ERR  Y  DITY  N+E GFDYLRDN+A + + LV R
Sbjct: 171 WMGRVHRFLGLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQR 230
Query: 122 WPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKN 181
                H+AIVDEVDS+LIDE R PL+ISG A      Y   A++A L+ + +HY V+L+ 
Sbjct: 231 G---HHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRK 287
Query: 182 NSVELTEEGIALAEMALETNDLWDE-NDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240
            +V + E+G+   E  L  ++L++  N P   ++ NALKAKE + RD  YIVR+G+ LI+
Sbjct: 288 RTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIV 347
Query: 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 300
           +E TGRV   RR++EG+HQA+EAKE ++I+A++  +A IT Q+ F+LY KL+GMTGTA+T
Sbjct: 348 DEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQT 407
Query: 301 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGS 360
           E  E  +++++ V+ +PTN+P IR D     + T   K+     +V   +  G+PVL+G+
Sbjct: 408 EAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGT 467
Query: 361 TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420
           TSVE SEYLS    ++ IPHNVLNA  KY  +EA  +A AGR+  +T++TNMAGRGTDI+
Sbjct: 468 TSVERSEYLSRQFTKRRIPHNVLNA--KYHEQEATIIAVAGRRGGVTVATNMAGRGTDIV 525
Query: 421 LGGNPKMLAKKIIEDR 436
           LGGN   L  + + +R
Sbjct: 526 LGGNVDFLTDQRLRER 541
>pdb|1NKT|A Chain A, Crystal Structure Of The Seca Protein Translocation Atpase From Mycobacterium Tuberculosis Complex With Adpbs Length = 922 Back     alignment and structure
>pdb|3DL8|A Chain A, Structure Of The Complex Of Aquifex Aeolicus Secyeg And Bacillus Subtilis Seca Length = 779 Back     alignment and structure
>pdb|3DL8|A Chain A, Structure Of The Complex Of Aquifex Aeolicus Secyeg And Bacillus Subtilis Seca Length = 779 Back     alignment and structure
>pdb|2IBM|A Chain A, A Novel Dimer Interface And Conformational Changes Revealed By An X- Ray Structure Of B. Subtilis Seca Length = 780 Back     alignment and structure
>pdb|2IBM|A Chain A, A Novel Dimer Interface And Conformational Changes Revealed By An X- Ray Structure Of B. Subtilis Seca Length = 780 Back     alignment and structure
>pdb|1M6N|A Chain A, Crystal Structure Of The Seca Translocation Atpase From Bacillus Subtilis Length = 802 Back     alignment and structure
>pdb|1M6N|A Chain A, Crystal Structure Of The Seca Translocation Atpase From Bacillus Subtilis Length = 802 Back     alignment and structure
>pdb|3JV2|A Chain A, Crystal Structure Of B. Subtilis Seca With Bound Peptide Length = 783 Back     alignment and structure
>pdb|3JV2|A Chain A, Crystal Structure Of B. Subtilis Seca With Bound Peptide Length = 783 Back     alignment and structure
>pdb|1TF2|A Chain A, Crystal Structure Of Seca:adp In An Open Conformation From Bacillus Subtilis Length = 844 Back     alignment and structure
>pdb|1TF2|A Chain A, Crystal Structure Of Seca:adp In An Open Conformation From Bacillus Subtilis Length = 844 Back     alignment and structure
>pdb|3IQM|A Chain A, Active Site Mutants Of B. Subtilis Seca Length = 802 Back     alignment and structure
>pdb|3IQM|A Chain A, Active Site Mutants Of B. Subtilis Seca Length = 802 Back     alignment and structure
>pdb|3IQY|A Chain A, Active Site Mutants Of B. Subtilis Seca Length = 841 Back     alignment and structure
>pdb|3IQY|A Chain A, Active Site Mutants Of B. Subtilis Seca Length = 841 Back     alignment and structure
>pdb|2IPC|A Chain A, Crystal Structure Of The Translocation Atpase Seca From Thermus Thermophilus Reveals A Parallel, Head-To-Head Dimer Length = 997 Back     alignment and structure
>pdb|2IPC|A Chain A, Crystal Structure Of The Translocation Atpase Seca From Thermus Thermophilus Reveals A Parallel, Head-To-Head Dimer Length = 997 Back     alignment and structure
>pdb|2IPC|A Chain A, Crystal Structure Of The Translocation Atpase Seca From Thermus Thermophilus Reveals A Parallel, Head-To-Head Dimer Length = 997 Back     alignment and structure
>pdb|3DIN|A Chain A, Crystal Structure Of The Protein-Translocation Complex Formed By The Secy Channel And The Seca Atpase Length = 871 Back     alignment and structure
>pdb|3DIN|A Chain A, Crystal Structure Of The Protein-Translocation Complex Formed By The Secy Channel And The Seca Atpase Length = 871 Back     alignment and structure
>pdb|3JUX|A Chain A, Structure Of The Translocation Atpase Seca From Thermotoga Maritima Length = 822 Back     alignment and structure
>pdb|3JUX|A Chain A, Structure Of The Translocation Atpase Seca From Thermotoga Maritima Length = 822 Back     alignment and structure
>pdb|2FSF|A Chain A, Escherichia Coli Seca, The Preprotein Translocase Dimeric Atpase Length = 853 Back     alignment and structure
>pdb|2FSF|A Chain A, Escherichia Coli Seca, The Preprotein Translocase Dimeric Atpase Length = 853 Back     alignment and structure
>pdb|2VDA|A Chain A, Solution Structure Of The Seca-Signal Peptide Complex Length = 828 Back     alignment and structure
>pdb|2VDA|A Chain A, Solution Structure Of The Seca-Signal Peptide Complex Length = 828 Back     alignment and structure
>pdb|2FSG|A Chain A, Complex Seca:atp From Escherichia Coli Length = 853 Back     alignment and structure
>pdb|2FSG|A Chain A, Complex Seca:atp From Escherichia Coli Length = 853 Back     alignment and structure
>pdb|3BXZ|A Chain A, Crystal Structure Of The Isolated Dead Motor Domains From Escherichia Coli Seca Length = 471 Back     alignment and structure
>pdb|3BXZ|A Chain A, Crystal Structure Of The Isolated Dead Motor Domains From Escherichia Coli Seca Length = 471 Back     alignment and structure
>pdb|3BXZ|A Chain A, Crystal Structure Of The Isolated Dead Motor Domains From Escherichia Coli Seca Length = 471 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query913
2ipc_A997 Preprotein translocase SECA subunit; nucleotide bi 0.0
1nkt_A922 Preprotein translocase SECA 1 subunit; preprotein 0.0
1nkt_A922 Preprotein translocase SECA 1 subunit; preprotein 7e-70
1tf5_A844 Preprotein translocase SECA subunit; ATPase, helic 0.0
1tf5_A844 Preprotein translocase SECA subunit; ATPase, helic 3e-62
2fsf_A853 Preprotein translocase SECA subunit; ATPase, DNA-R 0.0
2fsf_A853 Preprotein translocase SECA subunit; ATPase, DNA-R 1e-57
3jux_A822 Protein translocase subunit SECA; protein transloc 0.0
3jux_A822 Protein translocase subunit SECA; protein transloc 2e-43
3jux_A822 Protein translocase subunit SECA; protein transloc 6e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} Length = 997 Back     alignment and structure
 Score =  902 bits (2332), Expect = 0.0
 Identities = 335/935 (35%), Positives = 489/935 (52%), Gaps = 91/935 (9%)

Query: 1   MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
           MRHFDVQ+IGGAVLH+G IAEMKTGEGKTLV+TLA  LNALTG+GVHVVTVNDYLA+RDA
Sbjct: 78  MRHFDVQLIGGAVLHEGKIAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDA 137

Query: 61  EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
           EWM  V+R LGLSVG+IQ    P ERR  Y  D+TY  NSELGFDYLRDN+A + +QLV+
Sbjct: 138 EWMGPVYRGLGLSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVL 197

Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGL------- 173
           R   P H+AI+DEVDS+LIDE R PL+ISG A K    Y   A++A+ L +GL       
Sbjct: 198 RHDHPLHYAIIDEVDSILIDEARTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVR 257

Query: 174 -----HYTVELKNNSVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRD 227
                 YTVE KN SV LT +GIA AE  L    L+  EN   A  ++ A++AKE Y RD
Sbjct: 258 KEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAHMLIQAIRAKELYHRD 317

Query: 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKL 287
             YIV++G+ +I++E TGR+   RR+ EG+HQA+EAKEG++I+ ++  +A ITYQ+ F+L
Sbjct: 318 RDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRL 377

Query: 288 YPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVE 347
           Y K +GMTGTAKTEEKEF +++ M V+ VPTN P IR D P   + T +GK+    +E+ 
Sbjct: 378 YEKRAGMTGTAKTEEKEFQEIYGMDVVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIA 437

Query: 348 SMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARP--------KYAAREAETVAQ 399
             +  G+PVLVG+ S+E SE LS +LK+  +    L  R         K    E E + +
Sbjct: 438 EKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRK 497

Query: 400 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKV 459
              + A     ++A     I   GN +   + +      L + R+ +  +V +     + 
Sbjct: 498 LLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNAKHHARE 557

Query: 460 LSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFF---SESVEMSQSMNLKELQ 516
              +     S  +     +  +      G +  Y  A        +  E    + +K++ 
Sbjct: 558 AEIVAQAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMV 617

Query: 517 KLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQ 576
              ++++        +    L  +++    C  +   V+ LGGL +IGT  HESRRIDNQ
Sbjct: 618 AGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQ 677

Query: 577 LRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLL 636
           LRGRAGRQGDPG +RF VS  D++ + F+ D    + ++ R+  D+  PIE   + R + 
Sbjct: 678 LRGRAGRQGDPGGSRFYVSFDDDLMRLFASD--RVIAMLDRMGFDDSEPIEHPMVTRSIE 735

Query: 637 GLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDE 696
             Q   E   F IRK L++FD+VL  QR+ +Y  R+ IL G +E   +     ++  V  
Sbjct: 736 RAQKRVEDRNFAIRKQLLQFDDVLSRQREVIYAQRRLILLGKDEEVKEAAIGMVEETVAS 795

Query: 697 IIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDIN 756
           +    ++P  HP  W L               + L A +             EL ++   
Sbjct: 796 LAENFLNPEVHPEDWDL---------------EGLKATLLDTAPQLQDFPFAELRALKAE 840

Query: 757 NFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASY 816
                                                            + L +  + +Y
Sbjct: 841 E----------------------------------------------AVERLVEAALKAY 854

Query: 817 LNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKI 876
               +E+      M+ VER V++  +D  W++HL N++ L   + +R +G ++P +EYKI
Sbjct: 855 EA--REAELSPPLMRAVERFVILNVVDNAWKEHLHNLDVLRQGIFLRGYGQKDPFQEYKI 912

Query: 877 DGCRFFISMLSATRRLTVESL--VQYWSSPMESQE 909
           +  R F  M++  +    + L  ++  + P+    
Sbjct: 913 EATRLFNEMVAFIKSEVAKFLFRLKVEAEPVRPVR 947
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Length = 922 Back     alignment and structure
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Length = 922 Back     alignment and structure
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Length = 844 Back     alignment and structure
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Length = 844 Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Length = 853 Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Length = 853 Back     alignment and structure
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Length = 822 Back     alignment and structure
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Length = 822 Back     alignment and structure
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Length = 822 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 913
d1nkta3288 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPa 4e-53
d1nkta3288 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPa 2e-16
d1tf5a3273 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase 6e-46
d1tf5a3273 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase 4e-20
d1tf5a1122 a.162.1.1 (A:227-348) Pre-protein crosslinking dom 4e-32
d1nkta1124 a.162.1.1 (A:226-349) Pre-protein crosslinking dom 2e-30
d1nkta4219 c.37.1.19 (A:397-615) Translocation ATPase SecA, n 2e-30
d1nkta4219 c.37.1.19 (A:397-615) Translocation ATPase SecA, n 3e-23
d1tf5a4175 c.37.1.19 (A:396-570) Translocation ATPase SecA, n 2e-22
d1tf5a4175 c.37.1.19 (A:396-570) Translocation ATPase SecA, n 2e-22
d1nkta2220 a.172.1.1 (A:616-835) Helical scaffold and wing do 4e-20
d1tf5a2210 a.172.1.1 (A:571-780) Helical scaffold and wing do 1e-12
d1gkub1237 c.37.1.16 (B:1-250) Helicase-like "domain" of reve 9e-09
>d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Length = 288 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Translocation ATPase SecA, nucleotide-binding domains
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  185 bits (470), Expect = 4e-53
 Identities = 98/151 (64%), Positives = 115/151 (76%), Gaps = 3/151 (1%)

Query: 1   MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
            R FDVQ++G A LH G++AEMKTGEGKTL   L AYLNAL G GVH+VTVNDYLA+RD+
Sbjct: 96  QRPFDVQVMGAAALHLGNVAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDS 155

Query: 61  EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
           EWM RVHRFLGL VG+I   M P+ERR  Y  DITY  N+E GFDYLRDN+A + + LV 
Sbjct: 156 EWMGRVHRFLGLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQ 215

Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGE 151
           R     H+AIVDEVDS+LIDE R PL+IS +
Sbjct: 216 RG---HHYAIVDEVDSILIDEARTPLIISNQ 243
>d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Length = 288 Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Length = 273 Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Length = 273 Back     information, alignment and structure
>d1tf5a1 a.162.1.1 (A:227-348) Pre-protein crosslinking domain of SecA {Bacillus subtilis [TaxId: 1423]} Length = 122 Back     information, alignment and structure
>d1nkta1 a.162.1.1 (A:226-349) Pre-protein crosslinking domain of SecA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 124 Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Length = 219 Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Length = 219 Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Length = 175 Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Length = 175 Back     information, alignment and structure
>d1nkta2 a.172.1.1 (A:616-835) Helical scaffold and wing domains of SecA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 220 Back     information, alignment and structure
>d1tf5a2 a.172.1.1 (A:571-780) Helical scaffold and wing domains of SecA {Bacillus subtilis [TaxId: 1423]} Length = 210 Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query913
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 100.0
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 100.0
d1nkta3288 Translocation ATPase SecA, nucleotide-binding doma 100.0
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 100.0
d1nkta2220 Helical scaffold and wing domains of SecA {Mycobac 100.0
d1tf5a2210 Helical scaffold and wing domains of SecA {Bacillu 100.0
d1nkta1124 Pre-protein crosslinking domain of SecA {Mycobacte 100.0
d1tf5a1122 Pre-protein crosslinking domain of SecA {Bacillus 100.0
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.66
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 99.65
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.63
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 99.58
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 99.58
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 99.57
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.56
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 99.51
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 99.5
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.49
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.36
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.36
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.35
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 99.25
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.23
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.2
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.17
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.14
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 99.09
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.09
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.07
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 98.93
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 98.91
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 98.89
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 98.81
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 98.75
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 98.72
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 98.46
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 98.42
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 98.39
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 98.34
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 98.27
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 98.25
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 98.25
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 98.14
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 97.99
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 97.96
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 97.62
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 97.52
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 96.87
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 96.4
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 95.42
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 91.72
d1ls1a2207 GTPase domain of the signal sequence recognition p 85.36
d2qy9a2211 GTPase domain of the signal recognition particle r 85.2
d1t5la1413 Nucleotide excision repair enzyme UvrB {Bacillus c 85.0
d1vmaa2213 GTPase domain of the signal recognition particle r 83.67
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Translocation ATPase SecA, nucleotide-binding domains
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=0  Score=569.10  Aligned_cols=195  Identities=63%  Similarity=1.029  Sum_probs=190.8

Q ss_pred             CCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             99822679999997269867833798369999999999997499679996498889998999999764409949997279
Q 002515            1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG   80 (913)
Q Consensus         1 ~rp~dvQl~g~l~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~NdyLA~RD~e~~~~~y~~LGlsv~~i~~~   80 (913)
                      |||||||++||++||+|+||||+|||||||+++||||++||.|++|||||+|||||+||++||+|+|++||||||++.++
T Consensus        79 ~RhyDVQLiGgi~L~~G~iaem~TGEGKTL~a~l~a~l~al~g~~vhvvTvNdyLA~RDae~m~~iy~~lGlsvg~~~~~  158 (273)
T d1tf5a3          79 MFPFKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNS  158 (273)
T ss_dssp             CCCCHHHHHHHHHHHTTSEEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTT
T ss_pred             EEEEHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             47730478999998765530206887510399999999996699856971573003312457767999829873456554


Q ss_pred             CCHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCHHHHHCCCCCCCEEEEEECCHHHHHCCCCCCEECCCCCCCCCCCHH
Q ss_conf             99988973228981898799503669887430031233306999840899604024431068975000378887755269
Q 002515           81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP  160 (913)
Q Consensus        81 ~~~~~r~~aY~~DI~YgT~~el~fDyLrD~l~~~~~~~v~r~~R~~~~~IVDEvDsiLiDea~tpLiiSg~~~~~~~~y~  160 (913)
                      +++++|+.+|+||||||||++||||||||||+.+.+.++||   +++|||||||||||||||||||||||          
T Consensus       159 ~~~~~r~~~Y~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r---~~~~aIvDEvDsiliDeartpliisg----------  225 (273)
T d1tf5a3         159 MSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQR---PLHFAVIDEVDSILIDEARTPLIISG----------  225 (273)
T ss_dssp             SCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCC---CCCEEEEETHHHHHTTTTTCEEEEEE----------
T ss_pred             CCHHHHHHHHHCCCEECCHHHHHHHHCCHHHHCCHHHHCCC---CCCEEEEECCHHHHHHCCCCCEEECC----------
T ss_conf             57777777760783550255554444114332586664568---88789997534662534688558536----------


Q ss_pred             HHHHHHHHHCCCCCEEEECCCCEEECCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCEEEEE
Q ss_conf             99999998103888188677874660483599999870369977888918999999999998621595428878939998
Q 002515          161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII  240 (913)
Q Consensus       161 ~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~l~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~~g~I~iv  240 (913)
                                                                                                      
T Consensus       226 --------------------------------------------------------------------------------  225 (273)
T d1tf5a3         226 --------------------------------------------------------------------------------  225 (273)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             ECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCC
Q ss_conf             6788831257534800458999682894467860045554136772227422467885027999998809992990899
Q 002515          241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN  319 (913)
Q Consensus       241 D~~TGRi~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~Is~q~~f~~Y~kl~GmTGTa~te~~Ef~~iY~l~v~~IPt~  319 (913)
                                                     +++|+|+|||||||++|++|+|||||+.+++.||+++|+++|+.||||
T Consensus       226 -------------------------------~~~~~a~it~q~~f~~y~~l~gmtgta~~~~~e~~~iy~l~v~~iptn  273 (273)
T d1tf5a3         226 -------------------------------QSMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTN  273 (273)
T ss_dssp             -------------------------------EEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCS
T ss_pred             -------------------------------CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEECCCC
T ss_conf             -------------------------------864154644999999999985774630778999884039766958999
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nkta2 a.172.1.1 (A:616-835) Helical scaffold and wing domains of SecA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1tf5a2 a.172.1.1 (A:571-780) Helical scaffold and wing domains of SecA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nkta1 a.162.1.1 (A:226-349) Pre-protein crosslinking domain of SecA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1tf5a1 a.162.1.1 (A:227-348) Pre-protein crosslinking domain of SecA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure