Citrus Sinensis ID: 002516

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910---
MGSVEEKIKAGGLVIRAQTTLLEEMKLLKEMQDQSGARKAINSELWHACAGPLVFLPQVGSLVYYFPQGHSEQADKDTDEIYAQMSLQPVNSEKDVFPIPDFGLKPSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLAAAAHAASNRSQFTIFYNPRACPSDFVIPLAKYRKSVYGTQMSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCSDKQKRVSPWEIETPESLFIFPSLTSGLKRPFHSGILATETEWGSLIKRPLACPEIAPGVMPYSSISNLCSEQLIKMMLKPQLVNNPGSFAASSLQETSGAKGAHLEEVKTLQSTINQKPRLVPSEMNRIDNQNCSQICLNQADTVNSSLSRINIPEKPHPPSKCEKQAPPGMNTDHLKSEPRQSIEQSSNLTSAADCSMEKPSGPLNPQNLVNQHAFHNQNEGLLQLQSSWPMQSQLESVFQAQQINVPQSDSTAHSGSLPILDTDEWMSHTSCNSLAGTYNRSPGPLPMFGLQEPSTMLPEVINPSLSFPGQEMWDHQLNNLRFLSPVDPLTSFTQQDHCSLNSSGLRDLSDESNNQSGIYSCLNIDVSNGGSTMIDHSVSSAILDEFCTLKDANFQNPPDCLMNTFSSSQDVQSQITSASLADSQAFSRQDFPDNSGGTSSSNVDFDESSLLQNTSWQPVVPPMRTYTKVQKTGSVGRSIDVTNFKNYDELCSAIERMFGLEGLLNDPRGTEWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPQEVEQMSEEGMKLLNSAAMQGIDCTKPEGGRA
ccccHHHccccccccHHHHHHHHHHHHcccccccccccccccHHHHHHcccccccccccccEEEEccccHHHcccccccccEEEEEEcccccccccccccccccccccccccEEEEEEcccccccccccccccccHHHHccccccccccccEEEEEEEccccEEEEEEEEEcccccEEEcccccccccccccccccEEEEEEcccccEEEEEEEEccccccccccccccccccHHHHHHHHHHHcccccEEEEEccccccccEEEEHHHHHHHHHccccccccEEEEEEccccccEEEEEEEEEEEcccccccccccccccEEEEccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccHHHHcccccccHHHHHHHHHHHHccccccccccccccEEEEEEccccEEEcccccHHHHHHHccEEEEEcHHHHHcccHHHHHHHcccccccccccccccccc
ccccHccccccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHcccccEccccccEEEEccccccccccccccEEEEEEEEccccccHccccccccccccccccccHHEEEEccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHcccEEEEEEEEccccccEEEccccEEEEcccEEEcccEEEEEEcccccEEEEEEEccccccccccccEccccHHHHHHHHHHHHHHccccEEEEEccccccccEEEEHHHHHHHHHcccEEEEEEEEEEEcccccccEEEEEEEEEccccccccccccccEEEEEEccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccHHccHHHHHcccccccccccccccccHHccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEccccHHHHHHHHHHHHccccEcccccccccEEEEEcccccEEEEccccHHHHHHHHEEEEEEcHHHHHHccccccccccccccccccccccccccc
MGSVEEKIKAGGLVIRAQTTLLEEMKLLKEMQDQSGARKAINSELWhacagplvflpqvgslvyyfpqghseqadkdTDEIYAQmslqpvnsekdvfpipdfglkpskhpseffcktltasdtsthggfsvprraaeklfppldytmqpptqeLVVRDlhdntwtfrhiyrgqpkrhllttGWSLfvgskrlragdsvlFIRDEKSQLMVGVRRAnrqqtalpssvlsaDSMHIGVLAAAAHAasnrsqftifynpracpsdfviplakyrksvygtqmsvgmrfgmmfeteesgkrrymgtivgisdldplrwpgskwrnlqvewdepgcsdkqkrvspweietpeslfifpsltsglkrpfhsgilaTETEwgslikrplacpeiapgvmpyssisNLCSEQLIKMMlkpqlvnnpgsfaasslqetsgakgahlEEVKTLQStinqkprlvpsemnridnqncsQICLNQADTvnsslsrinipekphppskcekqappgmntdhlkseprqsieqssnltsaadcsmekpsgplnpqnlvnqhafhnqnegllqlqsswpmqsQLESVFQAqqinvpqsdstahsgslpildtdewmshtscnslagtynrspgplpmfglqepstmlpevinpslsfpgqemwdhqlnnlrflspvdpltsftqqdhcslnssglrdlsdesnnqsgiysclnidvsnggstmidhsvssaildefctlkdanfqnppdclmntfsssqdVQSQITSAsladsqafsrqdfpdnsggtsssnvdfdessllqntswqpvvppmrtytkvqktgsvgrsidvtnfkNYDELCSAIERMFGlegllndprgtewKLVYVDYEndvllvgddpweeFVGCVRCIRILSPQEVEQMSEEGMKLLNSAAmqgidctkpeggra
mgsveekikagglviraQTTLLEEMKLLKEMQDQSGARKAINSELWHACAGPLVFLPQVGSLVYYFPQGHSEQADKDTDEIYAQMSLQPVNSEKDVFPIPDFGLKPSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHiyrgqpkrhllttgwslfvgskrlragdsvlFIRDEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLAAAAHAASNRSQFTIFYNPRACPSDFVIPLAKYRKSVygtqmsvgmRFGMMFETEESGKRRYMGTIVGisdldplrwpGSKWRNLQvewdepgcsdkqkrvspweietpESLFIFPSLTSGLKRPFHSGILATETEWGSLIKRPLACPEIAPGVMPYSSISNLCSEQLIKMMLKPQLVNNPGSFAASSLQETSGAKGAHLeevktlqstinqkprlvpSEMNRIDNQNCSQICLNQADTVNSSLSRINIPEKPHPPSKCEKQAPPGMNTDHLKSEPRQSIEQSSNLTSAADCSMEKPSGPLNPQNLVNQHAFHNQNEGLLQLQSSWPMQSQLESVFQAQQINVPQSDSTAHSGSLPILDTDEWMSHTSCNSLAGTYNRSPGPLPMFGLQEPSTMLPEVINPSLSFPGQEMWDHQLNNLRFLSPVDPLTSFTQQDHCSLNSSGLRDLSDESNNQSGIYSCLNIDVSNGGSTMIDHSVSSAILDEFCTLKDANFQNPPDCLMNTFSSSQDVQSQITSASLADSQAFSRQDFPDNSGGTSSSNVDFDESSLLqntswqpvvppMRTYtkvqktgsvgrsidvtnfKNYDELCSAIERMFGLEGLLNDPRGTEWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPQEVEQMSEEGMKLLNSaamqgidctkpeggra
MGSVEEKIKAGGLVIRAQTTlleemkllkemQDQSGARKAINSELWHACAGPLVFLPQVGSLVYYFPQGHSEQADKDTDEIYAQMSLQPVNSEKDVFPIPDFGLKPSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLaaaahaaSNRSQFTIFYNPRACPSDFVIPLAKYRKSVYGTQMSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCSDKQKRVSPWEIETPESLFIFPSLTSGLKRPFHSGILATETEWGSLIKRPLACPEIAPGVMPYSSISNLCSEQLIKMMLKPQLVNNPGSFAASSLQETSGAKGAHLEEVKTLQSTINQKPRLVPSEMNRIDNQNCSQICLNQADTVNSSLSRINIPEKPHPPSKCEKQAPPGMNTDHLKSEPRQSIEQSSNLTSAADCSMEKPSGPLNPQNLVNQHAFHNQNEGLLQLQSSWPMQSQLESVFQAQQINVPQSDSTAHSGSLPILDTDEWMSHTSCNSLAGTYNRSPGPLPMFGLQEPSTMLPEVINPSLSFPGQEMWDHQLNNLRFLSPVDPLTSFTQQDHCSLNSSGLRDLSDESNNQSGIYSCLNIDVSNGGSTMIDHSVSSAILDEFCTLKDANFQNPPDCLMNTFSSSQDVQSQITSASLADSQAFSRQDFPDNSGGTSSSNVDFDESSLLQNTSWQPVVPPMRTYTKVQKTGSVGRSIDVTNFKNYDELCSAIERMFGLEGLLNDPRGTEWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPQEVEQMSEEGMKLLNSAAMQGIDCTKPEGGRA
**********GGLVIRAQTTLLEEMKL***********KAINSELWHACAGPLVFLPQVGSLVYYFPQ********************************************FFCKTLT******************KLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLMVGVR*************LSADSMHIGVLAAAAHAASNRSQFTIFYNPRACPSDFVIPLAKYRKSVYGTQMSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCS****RVSPWEIETPESLFIFPSLTSGLKRPFHSGILATETEWGSLIKRPLACPEIAPGVMPYSSISNLCSEQLIKMMLKPQL*****************************************************QICL********************************************************************************************************************************W*****************************************FPGQEMWDHQLNNLRFLSPVDPLT**************************GIYSCLNIDVSNGGSTMIDHSVSSAILDEFCTLKDANFQN***C*******************************************************WQPVVPPMRTYTKVQKTGSVGRSIDVTNFKNYDELCSAIERMFGLEGLLNDPRGTEWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILS*********************************
******************************************SELWHACAGPLVFLPQVGSLVYYFPQGHSEQADKDTDEIYAQMSLQ*************************FCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLMVGVRRANRQQT***************VLAAAAHAASNRSQFTIFYNPRACPSDFVIPLAKYRKSVYGTQMSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCSDKQKRVSPWEIETPE*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************YTKVQKTGSVGRSIDVTNFKNYDELCSAIERMFGLEGLLNDPRGTEWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPQE******************************
MGSVEEKIKAGGLVIRAQTTLLEEMKLLKEMQDQSGARKAINSELWHACAGPLVFLPQVGSLVYYFPQGHSEQADKDTDEIYAQMSLQPVNSEKDVFPIPDFGLKPSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLAAAAHAASNRSQFTIFYNPRACPSDFVIPLAKYRKSVYGTQMSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCSDKQKRVSPWEIETPESLFIFPSLTSGLKRPFHSGILATETEWGSLIKRPLACPEIAPGVMPYSSISNLCSEQLIKMMLKPQLVNNPGSFAASSLQETSGAKGAHLEEVKTLQSTINQKPRLVPSEMNRIDNQNCSQICLNQADTVNSSLSRINIPE************PPGMN****************************PSGPLNPQNLVNQHAFHNQNEGLLQLQSSWPMQSQLESVFQAQQIN**********GSLPILDTDEWMSHTSCNSLAGTYNRSPGPLPMFGLQEPSTMLPEVINPSLSFPGQEMWDHQLNNLRFLSPVDPLTSFTQQDHCSLNSSGLRDLSDESNNQSGIYSCLNIDVSNGGSTMIDHSVSSAILDEFCTLKDANFQNPPDCLMNTF****************DSQAFSRQD************VDFDESSLLQNTSWQPVVPPMRTYTKVQKTGSVGRSIDVTNFKNYDELCSAIERMFGLEGLLNDPRGTEWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPQEVEQMSEEGMKLLNSAAMQGIDCTKPEGGRA
*************************************RKAINSELWHACAGPLVFLPQVGSLVYYFPQGHSEQADKDTDEIYAQMSLQPVNS**************SKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLMVGVRRANRQ***LP*S**SAD*MHIGVLAAAAHAASNRSQFTIFYNPRACPSDFVIPLAKYRKSVYGTQMSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCSDKQKRVSPWEIETPESLFIFPSLTSGLKR****************I***************YSSISNLCSEQLIKMMLKPQL**NPG***AS*LQET******************************************************************************************************************************************************************************************************************************************************************************************************LK***********************************************************************PMRTYTKVQKTGSVGRSIDVTNFKNYDELCSAIERMFGLEGLLNDPRGTEWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPQEVEQMS*************************
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MGSVEEKIKAGGLVIRAQTTLLEEMKLLKEMQDQSGARKAINSELWHACAGPLVFLPQVGSLVYYFPQGHSEQADKDTDEIYAQMSLQPVNSEKDVFPIPDFGLKPSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLAAAAHAASNRSQFTIFYNPRACPSDFVIPLAKYRKSVYGTQMSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCSDKQKRVSPWEIETPESLFIFPSLTSGLKRPFHSGILATETEWGSLIKRPLACPEIAPGVMPYSSISNLCSEQLIKMMLKPQLVNNPGSFAASSLQETSGAKGAHLEEVKTLQSTINQKPRLVPSEMNRIDNQNCSQICLNQADTVNSSLSRINIPEKPHPPSKCEKQAPPGMNTDHLKSEPRQSIEQSSNLTSAADCSMEKPSGPLNPQNLVNQHAFHNQNEGLLQLQSSWPMQSQLESVFQAQQINVPQSDSTAHSGSLPILDTDEWMSHTSCNSLAGTYNRSPGPLPMFGLQEPSTMLPEVINPSLSFPGQEMWDHQLNNLRFLSPVDPLTSFTQQDHCSLNSSGLRDLSDESNNQSGIYSCLNIDVSNGGSTMIDHSVSSAILDEFCTLKDANFQNPPDCLMNTFSSSQDVQSQITSASLADSQAFSRQDFPDNSGGTSSSNVDFDESSLLQNTSWQPVVPPMRTYTKVQKTGSVGRSIDVTNFKNYDELCSAIERMFGLEGLLNDPRGTEWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPQEVEQMSEEGMKLLNSAAMQGIDCTKPEGGRA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query913 2.2.26 [Sep-21-2011]
P93024902 Auxin response factor 5 O yes no 0.915 0.926 0.592 0.0
Q8S983955 Auxin response factor 11 yes no 0.388 0.371 0.693 1e-152
Q01K26955 Auxin response factor 11 N/A no 0.388 0.371 0.693 1e-152
Q6Z2W3 1142 Auxin response factor 5 O no no 0.376 0.301 0.632 1e-128
A3B9A0 1055 Auxin response factor 16 no no 0.412 0.357 0.605 1e-127
A2YAA5 1055 Auxin response factor 16 N/A no 0.412 0.357 0.602 1e-127
Q0D9R7 1161 Auxin response factor 19 no no 0.373 0.293 0.634 1e-126
Q8RYC8 1086 Auxin response factor 19 no no 0.376 0.316 0.621 1e-126
Q6YZW0 1116 Auxin response factor 21 no no 0.374 0.306 0.621 1e-126
Q9ZTX8935 Auxin response factor 6 O no no 0.363 0.355 0.615 1e-125
>sp|P93024|ARFE_ARATH Auxin response factor 5 OS=Arabidopsis thaliana GN=ARF5 PE=1 SV=3 Back     alignment and function desciption
 Score = 1005 bits (2599), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 569/960 (59%), Positives = 664/960 (69%), Gaps = 124/960 (12%)

Query: 1   MGSVEEKIKAGGLV--------IRAQTTLLEEMKLLKEMQDQSGARK-AINSELWHACAG 51
           +  VE+K+K   LV          +Q+TLLEEMKLLK   DQSG RK  INSELWHACAG
Sbjct: 5   LSCVEDKMKTSCLVNGGGTITTTTSQSTLLEEMKLLK---DQSGTRKPVINSELWHACAG 61

Query: 52  PLVFLPQVGSLVYYFPQGHSEQ---------------------------------ADKDT 78
           PLV LPQVGSLVYYF QGHSEQ                                 ADKD+
Sbjct: 62  PLVCLPQVGSLVYYFSQGHSEQVAVSTRRSATTQVPNYPNLPSQLMCQVHNVTLHADKDS 121

Query: 79  DEIYAQMSLQPVNSEKDVFPIPDFG-LKPSKHPSEFFCKTLTASDTSTHGGFSVPRRAAE 137
           DEIYAQMSLQPV+SE+DVFP+PDFG L+ SKHP+EFFCKTLTASDTSTHGGFSVPRRAAE
Sbjct: 122 DEIYAQMSLQPVHSERDVFPVPDFGMLRGSKHPTEFFCKTLTASDTSTHGGFSVPRRAAE 181

Query: 138 KLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDS 197
           KLFPPLDY+ QPPTQELVVRDLH+NTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDS
Sbjct: 182 KLFPPLDYSAQPPTQELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDS 241

Query: 198 VLFIRDEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLAAAAHAASNRSQFTIFYNPR 257
           VLFIRDEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLAAAAHA +NR+ F IFYNPR
Sbjct: 242 VLFIRDEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLAAAAHATANRTPFLIFYNPR 301

Query: 258 ACPSDFVIPLAKYRKSVYGTQMSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGS 317
           ACP++FVIPLAKYRK++ G+Q+SVGMRFGMMFETE+SGKRRYMGTIVGISDLDPLRWPGS
Sbjct: 302 ACPAEFVIPLAKYRKAICGSQLSVGMRFGMMFETEDSGKRRYMGTIVGISDLDPLRWPGS 361

Query: 318 KWRNLQVEWDEPGCSDKQKRVSPWEIETPESLFIFPSLTSGLKRPFHSGILATETEWGSL 377
           KWRNLQVEWDEPGC+DK  RVSPW+IETPESLFIFPSLTSGLKR  H    A ETEWGSL
Sbjct: 362 KWRNLQVEWDEPGCNDKPTRVSPWDIETPESLFIFPSLTSGLKRQLHPSYFAGETEWGSL 421

Query: 378 IKRPLA-CPEIAPGVMPYSSISNLCSEQLIKMMLKPQLVNNPGSFAASSLQETSGAKGAH 436
           IKRPL   P+ A G+MPY+S  ++ SEQL+KMM++P    N  SF +   Q      G  
Sbjct: 422 IKRPLIRVPDSANGIMPYASFPSMASEQLMKMMMRPHNNQNVPSFMSEMQQNIVMGNGGL 481

Query: 437 LEEVKTLQS-TINQKPRLVPSEMNRIDNQNCSQICLNQADTVNSSLSRINIPEKPHPPSK 495
           L ++K  Q   +NQK  +V  +     N + S          N+S    N+ +    P+K
Sbjct: 482 LGDMKMQQPLMMNQKSEMVQPQNKLTVNPSAS----------NTSGQEQNLSQSMSAPAK 531

Query: 496 CEKQAPPGMNTDHLKSEPRQSIEQSSNLTSAADCSMEKPSGPLNPQNLVNQHAFHNQNEG 555
            E     G ++  ++    QS+EQ+S +T++  C+ EK          VNQ         
Sbjct: 532 PENSTLSGCSSGRVQHGLEQSMEQASQVTTSTVCNEEK----------VNQ--------- 572

Query: 556 LLQL-QSSWPMQSQLESVFQAQQINVPQSDSTAHSGSLPILDTDEWMSHTSC-NSLAGTY 613
           LLQ   +S P+Q+  + +    QI  PQSD          L+TDE  S  S   SLAG+Y
Sbjct: 573 LLQKPGASSPVQAD-QCLDITHQIYQPQSDPI---NGFSFLETDELTSQVSSFQSLAGSY 628

Query: 614 NRSPGPLPMFGLQEPSTMLPEVINPSLSFPGQEMWDHQLNNLRFLSPVDPLTSFTQQDHC 673
            +   P  +      + +LP+  N  L     ++WD QLN L+F    D  +   QQD  
Sbjct: 629 KQ---PFILSSQDSSAVVLPDSTNSPLF---HDVWDTQLNGLKF----DQFSPLMQQD-- 676

Query: 674 SLNSSGLRDLSDESNNQSGIYSCLNIDVSNG-GSTMIDHSVSSAILDEFCTLKDANFQN- 731
                              +Y+  NI +SN   S ++D  +S+ +LD+FC +KD +FQN 
Sbjct: 677 -------------------LYASQNICMSNSTTSNILDPPLSNTVLDDFCAIKDTDFQNH 717

Query: 732 PPDCLM--NTFSSSQDVQSQITSASLADSQAFSRQDFPDNSG--GTSSSNVDFDESSLLQ 787
           P  CL+  N  S +QDVQSQITSAS ADSQAFSRQDFPDNSG  GTSSSNVDFD+ SL Q
Sbjct: 718 PSGCLVGNNNTSFAQDVQSQITSASFADSQAFSRQDFPDNSGGTGTSSSNVDFDDCSLRQ 777

Query: 788 N---TSWQPVVPP-MRTYTKVQKTGSVGRSIDVTNFKNYDELCSAIERMFGLEGLLNDPR 843
           N   +SWQ +  P +RTYTKVQKTGSVGRSIDVT+FK+Y+EL SAIE MFGLEGLL  P+
Sbjct: 778 NSKGSSWQKIATPRVRTYTKVQKTGSVGRSIDVTSFKDYEELKSAIECMFGLEGLLTHPQ 837

Query: 844 GTEWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPQEVEQMSEEGMKLLNSAAMQGI 903
            + WKLVYVDYE+DVLLVGDDPWEEFVGCVRCIRILSP EV+QMSEEGMKLLNSA +  +
Sbjct: 838 SSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPTEVQQMSEEGMKLLNSAGINDL 897
Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8S983|ARFK_ORYSJ Auxin response factor 11 OS=Oryza sativa subsp. japonica GN=ARF11 PE=2 SV=1 Back     alignment and function description
>sp|Q01K26|ARFK_ORYSI Auxin response factor 11 OS=Oryza sativa subsp. indica GN=ARF11 PE=2 SV=2 Back     alignment and function description
>sp|Q6Z2W3|ARFE_ORYSJ Auxin response factor 5 OS=Oryza sativa subsp. japonica GN=ARF5 PE=2 SV=2 Back     alignment and function description
>sp|A3B9A0|ARFP_ORYSJ Auxin response factor 16 OS=Oryza sativa subsp. japonica GN=ARF16 PE=2 SV=1 Back     alignment and function description
>sp|A2YAA5|ARFP_ORYSI Auxin response factor 16 OS=Oryza sativa subsp. indica GN=ARF16 PE=2 SV=1 Back     alignment and function description
>sp|Q0D9R7|ARFS_ORYSJ Auxin response factor 19 OS=Oryza sativa subsp. japonica GN=ARF19 PE=2 SV=2 Back     alignment and function description
>sp|Q8RYC8|ARFS_ARATH Auxin response factor 19 OS=Arabidopsis thaliana GN=ARF19 PE=1 SV=2 Back     alignment and function description
>sp|Q6YZW0|ARFU_ORYSJ Auxin response factor 21 OS=Oryza sativa subsp. japonica GN=ARF21 PE=2 SV=2 Back     alignment and function description
>sp|Q9ZTX8|ARFF_ARATH Auxin response factor 6 OS=Arabidopsis thaliana GN=ARF6 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query913
255538886950 Auxin response factor, putative [Ricinus 0.994 0.955 0.717 0.0
359492211947 PREDICTED: auxin response factor 5-like 0.985 0.950 0.714 0.0
27450533954 hypothetical transcription factor [Prunu 0.994 0.951 0.698 0.0
359492209925 PREDICTED: auxin response factor 5-like 0.960 0.948 0.693 0.0
449460205949 PREDICTED: auxin response factor 5-like 0.989 0.951 0.684 0.0
302142628907 unnamed protein product [Vitis vinifera] 0.939 0.945 0.685 0.0
356552071929 PREDICTED: auxin response factor 5-like 0.963 0.947 0.648 0.0
356564347934 PREDICTED: auxin response factor 5-like 0.966 0.944 0.644 0.0
350539842930 auxin response factor 5 [Solanum lycoper 0.967 0.949 0.628 0.0
15223692902 auxin response factor 5 [Arabidopsis tha 0.915 0.926 0.592 0.0
>gi|255538886|ref|XP_002510508.1| Auxin response factor, putative [Ricinus communis] gi|223551209|gb|EEF52695.1| Auxin response factor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1335 bits (3454), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 685/955 (71%), Positives = 759/955 (79%), Gaps = 47/955 (4%)

Query: 1   MGSVEEKIKAGGLVIR-AQTTLLEEMKLLKEMQDQSGARKAINSELWHACAGPLVFLPQV 59
           M SVEEKIKAG  V   AQT LLEEMKLLKE+QD SG RK INSELW+ACAGPLV LPQV
Sbjct: 1   MASVEEKIKAGSFVSSGAQTNLLEEMKLLKEIQDHSGTRKTINSELWYACAGPLVSLPQV 60

Query: 60  GSLVYYFPQGHSEQ---------------------------------ADKDTDEIYAQMS 86
           GSLVYYFPQGHSEQ                                 AD+DTDEIYAQMS
Sbjct: 61  GSLVYYFPQGHSEQVAVSTKRTATSQIPNYPNLASQLLCQVHNVTLHADRDTDEIYAQMS 120

Query: 87  LQPVNSEKDVFPIPDFGLKPSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYT 146
           LQPVNSEKDVFPIPDFGLKPSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYT
Sbjct: 121 LQPVNSEKDVFPIPDFGLKPSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYT 180

Query: 147 MQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKS 206
           MQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRL+AGDSVLFIRDEKS
Sbjct: 181 MQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDSVLFIRDEKS 240

Query: 207 QLMVGVRRANRQQTALPSSVLSADSMHIGVLAAAAHAASNRSQFTIFYNPRACPSDFVIP 266
           QL+VGVRRANRQQT LPS VLSADSMHIGVLAAAAHAA+NRS FTIFYNPRACPS+FVIP
Sbjct: 241 QLLVGVRRANRQQTTLPSLVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIP 300

Query: 267 LAKYRKSVYGTQMSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEW 326
           LAKYRK+V+GTQ+SVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEW
Sbjct: 301 LAKYRKAVFGTQVSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEW 360

Query: 327 DEPGCSDKQKRVSPWEIETPESLFIFPSLTSGLKRPFHSGILATETEWGSLIKRPLA-CP 385
           DEPGCSDKQ RVS WEIETPE+LFIFPSLTSGLKRP HSG L  ETEWG+LIKRPL   P
Sbjct: 361 DEPGCSDKQNRVSSWEIETPENLFIFPSLTSGLKRPLHSGYLGGETEWGNLIKRPLIWLP 420

Query: 386 EIAPGVMPYSSISNLCSEQLIKMMLKPQLVNNPGSFAASSLQETSGAKGAHLEEVKTLQS 445
           E A G   Y SI NLCS++L KM++KPQ VN PG    SSLQE S AKGA L+++K +Q 
Sbjct: 421 ETANGNFAYPSIPNLCSDRLFKMLMKPQGVNYPG-ICESSLQEVSAAKGASLDDIKAMQG 479

Query: 446 TINQKPRLVPSEMNRIDNQNCSQICLNQADTVNSSLSRINIPEKPHPPSKCEKQAPPGMN 505
           T+   P+L  S +  ++NQN SQ C NQ+DTVNS  S+IN     +PPS  E Q P G  
Sbjct: 480 TMKHMPQLNQSVVTSVENQNQSQFCPNQSDTVNSPSSKINATGNIYPPSNIENQIPAGNI 539

Query: 506 TDHLKSEPRQSIEQSSNLTSAADCSMEKPSGPL-NPQNLVNQHAFHNQNEGLLQLQSS-W 563
            + LKSEP  S +Q S +TS  +C+ EKPS    NPQN  NQ  F NQN+  L  Q++ W
Sbjct: 540 IEKLKSEPELSTDQLSQVTSIVECNEEKPSSSFTNPQNSGNQLEFQNQNQSHLHAQTNLW 599

Query: 564 PMQSQLE-SVFQAQQINVPQSDSTAHSGSLPILDTDEWMSHTSCNSLAGTYNRSPGPLPM 622
            +QS LE S+   QQI+VPQ+D+   + SLP LD+DEWMS+ SC S  G Y  S GP+ M
Sbjct: 600 LVQSSLEPSILHPQQIHVPQADANTFNCSLPFLDSDEWMSNPSCLSFPGMYGSS-GPVSM 658

Query: 623 FGLQEPSTMLPEVINPSLSFPGQEMWDHQLNNLRFLSPV--DPLTSFTQQDHCSLNSSGL 680
           FG QEPS +LPE  NPS+    Q++WD QLNNLRFLSP   +PL    QQD CSLNS+  
Sbjct: 659 FGFQEPSAILPEAGNPSVPLMNQDLWDQQLNNLRFLSPASQNPL---AQQDPCSLNSTVA 715

Query: 681 RDLSDESNNQSGIYSCLNIDVSNGGSTMIDHSVSSAILDEFCTLKDANFQNPPDCLMN-- 738
           + LSDESN+QSGIY  LNIDV NGGS +ID SVS+AILDEFCT KDA+FQNP DCL+   
Sbjct: 716 KALSDESNDQSGIYGSLNIDVGNGGSAVIDPSVSNAILDEFCTAKDADFQNPSDCLVGKE 775

Query: 739 TFSSSQDVQSQITSASLADSQAFSRQDFPDNSGGTSSSNVDFDESSLLQNTSWQPVVPPM 798
            FS+SQDVQSQITS SLADSQAFS+QDFPD+SGGTSSSNVDFD+ + +QN SWQ V P +
Sbjct: 776 VFSTSQDVQSQITSVSLADSQAFSQQDFPDSSGGTSSSNVDFDKGNYMQNNSWQQVAPRV 835

Query: 799 RTYTKVQKTGSVGRSIDVTNFKNYDELCSAIERMFGLEGLLNDPRGTEWKLVYVDYENDV 858
           RTYTKVQK GSVGRSIDV+ FKNY+ELCSAIE MFGLEGLLN+PR + WKLVYVDYENDV
Sbjct: 836 RTYTKVQKAGSVGRSIDVSGFKNYEELCSAIECMFGLEGLLNNPRESGWKLVYVDYENDV 895

Query: 859 LLVGDDPWEEFVGCVRCIRILSPQEVEQMSEEGMKLLNSAAMQGIDCTKPEGGRA 913
           LL+GDDPWEEFVGCVRCIRILSP EV+QMSEEGMKLLN+  MQG+  +  +G  A
Sbjct: 896 LLIGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNNVNMQGLAASIADGSHA 950

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359492211|ref|XP_003634382.1| PREDICTED: auxin response factor 5-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|27450533|gb|AAO14628.1|AF467900_5 hypothetical transcription factor [Prunus persica] Back     alignment and taxonomy information
>gi|359492209|ref|XP_003634381.1| PREDICTED: auxin response factor 5-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449460205|ref|XP_004147836.1| PREDICTED: auxin response factor 5-like [Cucumis sativus] gi|449476870|ref|XP_004154860.1| PREDICTED: auxin response factor 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|302142628|emb|CBI19831.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356552071|ref|XP_003544394.1| PREDICTED: auxin response factor 5-like [Glycine max] Back     alignment and taxonomy information
>gi|356564347|ref|XP_003550416.1| PREDICTED: auxin response factor 5-like [Glycine max] Back     alignment and taxonomy information
>gi|350539842|ref|NP_001234545.1| auxin response factor 5 [Solanum lycopersicum] gi|300253180|gb|ADJ96592.1| auxin response factor 5 [Solanum lycopersicum] gi|310697420|gb|ADP06665.1| auxin response factor 5 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|15223692|ref|NP_173414.1| auxin response factor 5 [Arabidopsis thaliana] gi|21263766|sp|P93024.3|ARFE_ARATH RecName: Full=Auxin response factor 5; AltName: Full=Auxin-responsive protein IAA24; AltName: Full=Transcription factor MONOPTEROS gi|12248005|gb|AAG50094.1|AF334716_1 auxin response factor 5 [Arabidopsis thaliana] gi|2961085|gb|AAC39410.1| transcription factor [Arabidopsis thaliana] gi|25083308|gb|AAN72061.1| transcription factor [Arabidopsis thaliana] gi|31711776|gb|AAP68244.1| At1g19850 [Arabidopsis thaliana] gi|332191785|gb|AEE29906.1| auxin response factor 5 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query913
TAIR|locus:2035454902 MP "MONOPTEROS" [Arabidopsis t 0.492 0.498 0.684 4.1e-262
TAIR|locus:2202205 1086 ARF19 "auxin response factor 1 0.647 0.544 0.427 1.4e-167
TAIR|locus:2204237935 ARF6 "auxin response factor 6" 0.337 0.329 0.617 2.6e-158
TAIR|locus:2152642811 ARF8 "auxin response factor 8" 0.318 0.358 0.643 1.8e-147
TAIR|locus:2174013859 ARF2 "auxin response factor 2" 0.352 0.374 0.482 2.8e-115
TAIR|locus:2175098788 ARF4 "auxin response factor 4" 0.332 0.385 0.495 2.8e-111
TAIR|locus:2025991665 ARF1 "auxin response factor 1" 0.343 0.472 0.472 1.7e-107
TAIR|locus:2076765602 ARF18 "auxin response factor 1 0.292 0.443 0.509 3.8e-102
TAIR|locus:2039124622 ARF11 "auxin response factor 1 0.304 0.446 0.489 5.5e-99
TAIR|locus:2138096638 ARF9 "auxin response factor 9" 0.554 0.793 0.371 2.1e-88
TAIR|locus:2035454 MP "MONOPTEROS" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1605 (570.0 bits), Expect = 4.1e-262, Sum P(3) = 4.1e-262
 Identities = 317/463 (68%), Positives = 368/463 (79%)

Query:    74 ADKDTDEIYAQMSLQPVNSEKDVFPIPDFG-LKPSKHPSEFFCKTLTASDTSTHGGFSVP 132
             ADKD+DEIYAQMSLQPV+SE+DVFP+PDFG L+ SKHP+EFFCKTLTASDTSTHGGFSVP
Sbjct:   117 ADKDSDEIYAQMSLQPVHSERDVFPVPDFGMLRGSKHPTEFFCKTLTASDTSTHGGFSVP 176

Query:   133 RRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRL 192
             RRAAEKLFPPLDY+ QPPTQELVVRDLH+NTWTFRHIYRGQPKRHLLTTGWSLFVGSKRL
Sbjct:   177 RRAAEKLFPPLDYSAQPPTQELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVGSKRL 236

Query:   193 RAGDSVLFIRDEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLXXXXXXXSNRSQFTI 252
             RAGDSVLFIRDEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVL       +NR+ F I
Sbjct:   237 RAGDSVLFIRDEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLAAAAHATANRTPFLI 296

Query:   253 FYNPRACPSDFVIPLAKYRKSVYGTQMSVGMRFGMMFETEESGKRRYMGTIVGISDLDPL 312
             FYNPRACP++FVIPLAKYRK++ G+Q+SVGMRFGMMFETE+SGKRRYMGTIVGISDLDPL
Sbjct:   297 FYNPRACPAEFVIPLAKYRKAICGSQLSVGMRFGMMFETEDSGKRRYMGTIVGISDLDPL 356

Query:   313 RWPGSKWRNLQVEWDEPGCSDKQKRVSPWEIETPESLFIFPSLTSGLKRPFHSGILATET 372
             RWPGSKWRNLQVEWDEPGC+DK  RVSPW+IETPESLFIFPSLTSGLKR  H    A ET
Sbjct:   357 RWPGSKWRNLQVEWDEPGCNDKPTRVSPWDIETPESLFIFPSLTSGLKRQLHPSYFAGET 416

Query:   373 EWGSLIKRPLA-CPEIAPGVMPYSSISNLCSEQLIKMMLKPQLVNNPGSFAASSLQETSG 431
             EWGSLIKRPL   P+ A G+MPY+S  ++ SEQL+KMM++P    N  SF +   Q    
Sbjct:   417 EWGSLIKRPLIRVPDSANGIMPYASFPSMASEQLMKMMMRPHNNQNVPSFMSEMQQNIVM 476

Query:   432 AKGAHLEEVKTLQSTI-NQKPRLVPSEMNRIDNQNCSQICLNQADTVNSSLSRINIPEKP 490
               G  L ++K  Q  + NQK     SEM  +  QN  ++ +N + + N+S    N+ +  
Sbjct:   477 GNGGLLGDMKMQQPLMMNQK-----SEM--VQPQN--KLTVNPSAS-NTSGQEQNLSQSM 526

Query:   491 HPPSKCEKQAPPGMNTDHLKSEPRQSIEQSSNLTSAADCSMEK 533
               P+K E     G ++  ++    QS+EQ+S +T++  C+ EK
Sbjct:   527 SAPAKPENSTLSGCSSGRVQHGLEQSMEQASQVTTSTVCNEEK 569
GO:0005634 "nucleus" evidence=ISM;IEA;ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IEP
GO:0009725 "response to hormone stimulus" evidence=IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS
GO:0009733 "response to auxin stimulus" evidence=IEP;RCA
GO:0005515 "protein binding" evidence=IPI
GO:0042802 "identical protein binding" evidence=IPI
GO:0016020 "membrane" evidence=IDA
GO:0009790 "embryo development" evidence=IGI
GO:0009908 "flower development" evidence=IGI
GO:0010305 "leaf vascular tissue pattern formation" evidence=IGI
GO:0048364 "root development" evidence=IGI
GO:0048507 "meristem development" evidence=IGI;RCA
GO:0044212 "transcription regulatory region DNA binding" evidence=IDA
GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA
GO:0007155 "cell adhesion" evidence=RCA
GO:0009741 "response to brassinosteroid stimulus" evidence=RCA
GO:0009855 "determination of bilateral symmetry" evidence=RCA
GO:0009886 "post-embryonic morphogenesis" evidence=RCA
GO:0009887 "organ morphogenesis" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA
GO:0009965 "leaf morphogenesis" evidence=RCA
GO:0010014 "meristem initiation" evidence=RCA
GO:0010051 "xylem and phloem pattern formation" evidence=IMP;RCA
GO:0010073 "meristem maintenance" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0016246 "RNA interference" evidence=RCA
GO:0031048 "chromatin silencing by small RNA" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0048439 "flower morphogenesis" evidence=RCA
GO:0048481 "ovule development" evidence=RCA
GO:0048519 "negative regulation of biological process" evidence=RCA
GO:0048527 "lateral root development" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0051567 "histone H3-K9 methylation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
GO:0009942 "longitudinal axis specification" evidence=IMP
TAIR|locus:2202205 ARF19 "auxin response factor 19" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204237 ARF6 "auxin response factor 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152642 ARF8 "auxin response factor 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174013 ARF2 "auxin response factor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175098 ARF4 "auxin response factor 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025991 ARF1 "auxin response factor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076765 ARF18 "auxin response factor 18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039124 ARF11 "auxin response factor 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138096 ARF9 "auxin response factor 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P93024ARFE_ARATHNo assigned EC number0.59270.91560.9268yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query913
pfam0650783 pfam06507, Auxin_resp, Auxin response factor 4e-43
pfam02309188 pfam02309, AUX_IAA, AUX/IAA family 2e-34
pfam0236297 pfam02362, B3, B3 DNA binding domain 3e-29
smart0101996 smart01019, B3, B3 DNA binding domain 1e-26
cd1001798 cd10017, B3_DNA, Plant-specific B3-DNA binding dom 6e-23
cd10015109 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains o 6e-08
cd10016142 cd10016, EcoRII_N, N-terminal domain of type IIE r 9e-05
>gnl|CDD|191545 pfam06507, Auxin_resp, Auxin response factor Back     alignment and domain information 
 Score =  150 bits (381), Expect = 4e-43
 Identities = 54/84 (64%), Positives = 65/84 (77%), Gaps = 1/84 (1%)

Query: 240 AAHAASNRSQFTIFYNPRACPSDFVIPLAKYRKSVYGTQMSVGMRFGMMFETEESGKRRY 299
           AAHAAS  S F +FYNPRA  S+FV+P AKY K++     SVGMRF M FETE+S +RR+
Sbjct: 1   AAHAASTGSPFHVFYNPRASTSEFVVPYAKYLKAMN-NPFSVGMRFKMRFETEDSSERRF 59

Query: 300 MGTIVGISDLDPLRWPGSKWRNLQ 323
            GTI G+SDLDP+RWP SKWR+LQ
Sbjct: 60  SGTISGVSDLDPIRWPNSKWRSLQ 83

A conserved region of auxin-responsive transcription factors. Length = 83
>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family Back     alignment and domain information
>gnl|CDD|216995 pfam02362, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|214977 smart01019, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain Back     alignment and domain information
>gnl|CDD|197381 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains of BfiI, EcoRII and plant B3 proteins Back     alignment and domain information
>gnl|CDD|197382 cd10016, EcoRII_N, N-terminal domain of type IIE restriction endonuclease EcoRII and similar proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 913
PF0650783 Auxin_resp: Auxin response factor; InterPro: IPR01 100.0
PF02309215 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A 100.0
PF02362100 B3: B3 DNA binding domain; InterPro: IPR003340 Two 99.71
KOG06441113 consensus Uncharacterized conserved protein, conta 99.01
PF09217156 EcoRII-N: Restriction endonuclease EcoRII, N-termi 98.0
PF03754114 DUF313: Domain of unknown function (DUF313) ; Inte 97.77
PF0056484 PB1: PB1 domain; InterPro: IPR000270 The Phox and 96.55
smart0066681 PB1 PB1 domain. Phox and Bem1p domain, present in 95.71
cd0599281 PB1 The PB1 domain is a modular domain mediating s 95.45
cd0640782 PB1_NLP A PB1 domain is present in NIN like protei 95.31
cd0639681 PB1_NBR1 The PB1 domain is an essential part of NB 94.81
cd0640986 PB1_MUG70 The MUG70 protein is a product of the me 94.45
cd0639891 PB1_Joka2 The PB1 domain is present in the Nicotia 94.41
cd0640380 PB1_Par6 The PB1 domain is an essential part of Pa 93.0
cd0640483 PB1_aPKC PB1 domain is an essential modular domain 91.66
cd0639992 PB1_P40 The PB1 domain is essential part of the p4 91.52
cd0640287 PB1_p62 The PB1 domain is an essential part of p62 91.15
cd0640181 PB1_TFG The PB1 domain found in TFG protein, an on 89.01
cd0639782 PB1_UP1 Uncharacterized protein 1. The PB1 domain 85.74
>PF06507 Auxin_resp: Auxin response factor; InterPro: IPR010525 This pattern represents a conserved region of auxin-responsive transcription factors Back     alignment and domain information 
Probab=100.00  E-value=4.4e-34  Score=255.98  Aligned_cols=83  Identities=65%  Similarity=1.136  Sum_probs=81.2

Q ss_pred             HHHHHhcCCeeEEEecCCCCCCCcccchhhHhhhhccCCcccCCEEEEeeeccccCcceeeeEEEeeccCCCCCCCCCCc
Q 002516          240 AAHAASNRSQFTIFYNPRACPSDFVIPLAKYRKSVYGTQMSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKW  319 (913)
Q Consensus       240 Aa~aaa~~~~F~V~Y~PRas~sEFVVp~~Ky~kAv~~~~ws~GMRFrM~fEtedss~rry~GTI~gvsd~DP~rWP~S~W  319 (913)
                      |+|||+++++|+|+||||++++|||||++||+||+. ++|++||||||.||+||+++++|+|||+||++.||+|||+|+|
T Consensus         1 A~~aa~~~~~F~V~Y~PRa~~sEFVV~~~k~~~al~-~~~~~GmRfkM~fE~eds~~~~~~GtI~~v~~~dp~~w~~S~W   79 (83)
T PF06507_consen    1 AAHAAATGSPFEVFYYPRASPSEFVVPASKYDKALN-HPWSVGMRFKMRFETEDSSERRWQGTIVGVSDLDPIRWPGSKW   79 (83)
T ss_pred             ChhHhhcCCeEEEEECCCCCCcceEEEHHHHHHHhc-CCCCCCcEEEEEeccCCCccceeeeEEeEeeccCCCCCCCCCc
Confidence            689999999999999999999999999999999997 8999999999999999999999999999999999999999999


Q ss_pred             ccce
Q 002516          320 RNLQ  323 (913)
Q Consensus       320 R~Lk  323 (913)
                      ||||
T Consensus        80 R~Lq   83 (83)
T PF06507_consen   80 RMLQ   83 (83)
T ss_pred             ccCc
Confidence            9997

The plant hormone auxin (indole-3-acetic acid) can regulate the gene expression of several families, including Aux/IAA, GH3 and SAUR families. Two related families of proteins, Aux/IAA proteins (IPR003311 from INTERPRO) and the auxin response factors (ARF), are key regulators of auxin-modulated gene expression []. There are multiple ARF proteins, some of which activate, while others repress transcription. ARF proteins bind to auxin-responsive cis-acting promoter elements (AuxREs) using an N-terminal DNA-binding domain. It is thought that Aux/IAA proteins activate transcription by modifying ARF activity through the C-terminal protein-protein interaction domains (IPR011525 from INTERPRO) found in both Aux/IAA and ARF proteins. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0009725 response to hormone stimulus, 0005634 nucleus
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression [] Back     alignment and domain information
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>PF09217 EcoRII-N: Restriction endonuclease EcoRII, N-terminal; InterPro: IPR023372 There are four classes of restriction endonucleases: types I, II,III and IV Back     alignment and domain information
>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function Back     alignment and domain information
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins Back     alignment and domain information
>smart00666 PB1 PB1 domain Back     alignment and domain information
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity Back     alignment and domain information
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium) Back     alignment and domain information
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62 Back     alignment and domain information
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain Back     alignment and domain information
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein Back     alignment and domain information
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis Back     alignment and domain information
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover Back     alignment and domain information
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK Back     alignment and domain information
>cd06397 PB1_UP1 Uncharacterized protein 1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query913
1wid_A130 Solution Structure Of The B3 Dna-Binding Domain Of 2e-09
>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1 Length = 130 Back     alignment and structure 
Iteration: 1

 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 113 FFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRG 172
            F K +T SD        +P+  AEK FP     +      L   D++   W FR+ Y  
Sbjct: 13  LFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWN 72
Query: 173 QPKRHLLTTGWSLFVGSKRLRAGDSVLFIRD--EKSQLMVG 211
             + ++LT GWS FV  K LRAGD V F R   +  QL +G
Sbjct: 73  SSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIG 113

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query913
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 6e-41
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
1yel_A104 AT1G16640; CESG, protein structure initiative, str 2e-04
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130 Back     alignment and structure
 Score =  145 bits (367), Expect = 6e-41
 Identities = 37/125 (29%), Positives = 54/125 (43%)

Query: 105 KPSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTW 164
              +     F K +T SD        +P+  AEK FP     +      L   D++   W
Sbjct: 5   SSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVW 64

Query: 165 TFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLMVGVRRANRQQTALPS 224
            FR+ Y    + ++LT GWS FV  K LRAGD V F R       + +   +R  + L +
Sbjct: 65  RFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDLDA 124

Query: 225 SVLSA 229
           S  S+
Sbjct: 125 SGPSS 129
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 104 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 913
d1wida_117 b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre 3e-36
d1na6a1175 b.142.1.1 (A:4-178) Restriction endonuclease EcoRI 3e-25
d1yela1102 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid 5e-15
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117 Back     information, alignment and structure

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  130 bits (329), Expect = 3e-36
 Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 2/113 (1%)

Query: 108 KHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFR 167
           +     F K +T SD        +P+  AEK FP     +      L   D++   W FR
Sbjct: 1   RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFR 60

Query: 168 HIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKS--QLMVGVRRANRQ 218
           + Y    + ++LT GWS FV  K LRAGD V F R      QL +G +  +  
Sbjct: 61  YSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGS 113
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 175 Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query913
d1wida_117 DNA-binding protein RAV1 {Thale cress (Arabidopsis 99.94
d1na6a1175 Restriction endonuclease EcoRII, N-terminal domain 99.84
d1yela1102 At1g16640 {Thale cress (Arabidopsis thaliana) [Tax 99.48
d2bkfa185 Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum 95.31
d1oeyj_105 Neutrophil cytosol factor 4 (p40phox component of 91.22
d1ip9a_85 Bud emergence mediator Bemp1 {Baker's yeast (Sacch 89.7
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.94  E-value=1.5e-26  Score=187.84  Aligned_cols=109  Identities=33%  Similarity=0.541  Sum_probs=102.0

Q ss_pred             CCEEEEEEECCCCCCCCCCEEEEHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCHHHHHHC
Q ss_conf             74159997012459988932560302632099999999999508999966998389899990899721772432334301
Q 002516          110 PSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGS  189 (913)
Q Consensus       110 ~~~~F~K~LT~SDvs~~GrfsVPkr~Ae~~FPpLd~~~~~p~q~L~v~Dl~G~~W~FR~~yrg~pkRhlLTtGWs~FVk~  189 (913)
                      ...+|.|+||+|||+++|||+||+.+|++|||+++...+.+++++.++|.+|++|+|+|++|++.++|+|++||..||++
T Consensus         3 ~~~iF~K~Lt~sDv~~~~rL~iP~~~~~~~lp~~~~~~~~~~~~~~~~d~~g~~W~~~~~~~~~~~~~~l~~GW~~Fv~~   82 (117)
T d1wida_           3 AEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKE   82 (117)
T ss_dssp             CEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHHH
T ss_pred             CCEEEEEEECCHHCCCCCEEEECHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEEECCHHHHHHH
T ss_conf             76479999111200898889977899997389543456777079999959999999999998899834774577998887


Q ss_pred             CCCCCCCEEEEEEC--CCCCEEEEEEECCCC
Q ss_conf             48756987999984--698489989944767
Q 002516          190 KRLRAGDSVLFIRD--EKSQLMVGVRRANRQ  218 (913)
Q Consensus       190 KkL~aGDsVvF~R~--e~G~L~VGIRRa~r~  218 (913)
                      ++|++||.|+|+++  ++++++|++||+...
T Consensus        83 ~~Lk~GD~~~F~~~~~~~~~~~i~~r~~~~~  113 (117)
T d1wida_          83 KNLRAGDVVSFSRSNGQDQQLYIGWKSRSGS  113 (117)
T ss_dssp             TTCCTTCEEEEEECCSSSCCEEEEEECCCSC
T ss_pred             CCCCCCCEEEEEEEECCCCEEEEEEEECCCC
T ss_conf             4999799999999818998899999999999
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure