Citrus Sinensis ID: 002526
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 912 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M9E8 | 943 | F-box protein At1g78280 O | yes | no | 0.912 | 0.882 | 0.621 | 0.0 | |
| Q67XX3 | 502 | F-box protein At5g06550 O | no | no | 0.383 | 0.697 | 0.386 | 4e-66 | |
| Q6PFM0 | 403 | Bifunctional arginine dem | yes | no | 0.269 | 0.610 | 0.417 | 4e-51 | |
| Q6Q4H1 | 385 | Bifunctional arginine dem | N/A | no | 0.258 | 0.612 | 0.392 | 2e-47 | |
| Q58DS6 | 403 | Bifunctional arginine dem | yes | no | 0.243 | 0.550 | 0.414 | 8e-47 | |
| Q6AYK2 | 403 | Bifunctional arginine dem | yes | no | 0.243 | 0.550 | 0.414 | 1e-46 | |
| Q9ERI5 | 403 | Bifunctional arginine dem | yes | no | 0.243 | 0.550 | 0.414 | 1e-46 | |
| Q5R6G2 | 403 | Bifunctional arginine dem | yes | no | 0.243 | 0.550 | 0.414 | 2e-46 | |
| Q6NYC1 | 403 | Bifunctional arginine dem | yes | no | 0.243 | 0.550 | 0.414 | 2e-46 | |
| Q9GYI4 | 400 | Bifunctional arginine dem | yes | no | 0.256 | 0.585 | 0.411 | 3e-46 |
| >sp|Q9M9E8|FB92_ARATH F-box protein At1g78280 OS=Arabidopsis thaliana GN=At1g78280 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 1105 bits (2858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 546/878 (62%), Positives = 663/878 (75%), Gaps = 46/878 (5%)
Query: 7 ALPVKDRRPDALGDLKIIPDEIICSILEHLTPRDVGRLACVSSVMYIFCNEEPLWMSLCL 66
L +DRRPDALG L ++PDE IC +LE+L PRD+ LACVSSVMYI CNEEPLWMSLCL
Sbjct: 3 TLGQRDRRPDALGSLSVLPDETICVLLEYLAPRDIAHLACVSSVMYILCNEEPLWMSLCL 62
Query: 67 KKASGVLQYKGSWKKTALHLEDPPIEYDESCTRLLHFDGFYSPFLYRRYYRCHTVLDGFS 126
++A G L+YKGSWKKT LHLE E D + + HFDGF S +LY+R+YRC+T LDGFS
Sbjct: 63 RRAKGPLEYKGSWKKTTLHLEGVTQEND-AYRKCFHFDGFMSLYLYKRFYRCNTSLDGFS 121
Query: 127 FDSQLVKRKKIVTREEFDREC-AEEPILLSGLADTWPARNTWTIDQLLTRYGDTAFRISQ 185
FD+ V+R++ ++ +EF +E A++P+LLSGLAD+WPA NTWTIDQL +YG+ FRISQ
Sbjct: 122 FDNGNVERRRNISLDEFSKEYDAKKPVLLSGLADSWPASNTWTIDQLSEKYGEVPFRISQ 181
Query: 186 RSVRSISMKFKDYVAYMNVQHDEDPLYIFDYKFGENAQGLLEDYRVPDLFQEDLFNVLDG 245
RS ISMKFKDY+AYM Q DEDPLY+FD KFGE A LL+DY VP LFQED F +LD
Sbjct: 182 RSPNKISMKFKDYIAYMKTQRDEDPLYVFDDKFGEAAPELLKDYSVPHLFQEDWFEILDK 241
Query: 246 DMRPSYRWVIIGPQRSGASWHVDPALTSAWNTLLCGRKRWALYPPGRVPLGVTVHVNEDD 305
+ RP YRW+I+GP+RSGASWHVDPALTSAWNTLLCGRKRWALYPPG+VPLGVTVHVNEDD
Sbjct: 242 ESRPPYRWLIVGPERSGASWHVDPALTSAWNTLLCGRKRWALYPPGKVPLGVTVHVNEDD 301
Query: 306 GDVNIETPSSLEWWLDFYPLLADDDKPIECTQLPGETIVVPSGWWHCILNLETTIAVTQN 365
GDV+I+TPSSL+WWLD+YPLLAD+DKPIECT LPGETI VPSGWWHCILNLE T+AVTQN
Sbjct: 302 GDVSIDTPSSLQWWLDYYPLLADEDKPIECTLLPGETIYVPSGWWHCILNLEPTVAVTQN 361
Query: 366 FVDSKNFEFVCLDFAPGYRHKGVCRAGLLALEEESLEGGGKNT-SAGDHDMSYPDLTRKE 424
FV+ +NF FVCLD APGY HKGVCRAGLLAL++E+ E + T D+ +SY DLTRKE
Sbjct: 362 FVNKENFGFVCLDMAPGYHHKGVCRAGLLALDDENSEDLEEETHDEEDNTLSYSDLTRKE 421
Query: 425 KRVRVNRCGEIQNHEEDTNGVSKNYNSSKQDFSYDINFLAKFLDEDRDHYNFPWSSGNCT 484
KR R+N GE +N EED NGVSK YN K FSYDI+FLA FLD++RDHYNFPWS GN
Sbjct: 422 KRTRMNGGGETENREEDVNGVSKRYNMWKNGFSYDIDFLASFLDKERDHYNFPWSMGNSV 481
Query: 485 GKREMREWLYKLWVGKPEMRELIWKGACLALNAGKWLELLEEICNFHKLPTLTAEEKLPV 544
G+REMR WL KLWV KPEMRELIWKGAC+ALNA KWL LEE+C FH LP +T +EKLPV
Sbjct: 482 GQREMRAWLSKLWVLKPEMRELIWKGACIALNAEKWLRCLEEVCTFHNLPLVTEDEKLPV 541
Query: 545 GNGSNPVYLMADCVVKIFVEGGFESSIYGLGTELEFYSLLAKVNSPLKNYIPDVLASGIL 604
G GSNPVYL++D +K+FVEGG E S+YGLGTELEFY +L + +SPLK +IP+VLASGIL
Sbjct: 542 GTGSNPVYLLSDYAIKLFVEGGLEQSMYGLGTELEFYDILGRADSPLKTHIPEVLASGIL 601
Query: 605 YVENGSYTIVPWDGKGVLDVI----GKCNLTLLNCKQEEFPFGIWSKKQFEYRSAWMSVS 660
+ E GSY +VPWDGK + D+I + ++LN EFPFGIW+K E+++
Sbjct: 602 FFEKGSYKVVPWDGKRIPDIISSSSFDFDASMLNS---EFPFGIWNKTLREHKNQGKPAP 658
Query: 661 KLSTSDGCNRIWPYIITKRCKGKMFAQLRDALSGEDVLNLASFLGEQLRNLHLLPCPPFN 720
S + +WPYIITKRCKGK+FAQLRD L+ D NLA FLG+QLRNLHLLP PP
Sbjct: 659 D-SFGSLSSHVWPYIITKRCKGKIFAQLRDDLTWNDAQNLAFFLGQQLRNLHLLPYPPV- 716
Query: 721 ESSLSDKLKTEPPFNNGFVEDVVDTSSVPAEWEIFIRTLARKKKNLVNRLTAWGHPIPKA 780
T P N V V + ++PAEW++F+ L +KKK++ +RL WG+PIP+A
Sbjct: 717 ---------TRPELLN--VNAVHEELNIPAEWKVFVDALCQKKKDVTSRLENWGNPIPRA 765
Query: 781 LIDKVDEYIPDD-FVKLLDIYQDENGLNKVCKPCSWIHSDIMDDNVYMEPCCASSRSNGN 839
L+ K+DEYIPDD FV LL ++++ NG +++ KPC+WIHSD+MDDN++MEP S
Sbjct: 766 LMTKIDEYIPDDFFVDLLHVFKETNGGDEI-KPCTWIHSDVMDDNIHMEPYADDSVD--- 821
Query: 840 AADTGPMVNGSINGYDEFGEAKSWHCSHIIDFSNLSIG 877
G+ SW SHI+DFS+L+IG
Sbjct: 822 ------------------GQHNSWRPSHILDFSDLTIG 841
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q67XX3|FB252_ARATH F-box protein At5g06550 OS=Arabidopsis thaliana GN=At5g06550 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6PFM0|JMJD6_DANRE Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Danio rerio GN=jmjd6 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q6Q4H1|JMJD6_HYDVU Bifunctional arginine demethylase and lysyl-hydroxylase PSR OS=Hydra vulgaris GN=PSR PE=1 SV=1 | Back alignment and function description |
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| >sp|Q58DS6|JMJD6_BOVIN Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Bos taurus GN=JMJD6 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6AYK2|JMJD6_RAT Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Rattus norvegicus GN=Jmjd6 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9ERI5|JMJD6_MOUSE Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Mus musculus GN=Jmjd6 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q5R6G2|JMJD6_PONAB Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Pongo abelii GN=JMJD6 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6NYC1|JMJD6_HUMAN Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Homo sapiens GN=JMJD6 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9GYI4|JMJD6_CAEEL Bifunctional arginine demethylase and lysyl-hydroxylase psr-1 OS=Caenorhabditis elegans GN=psr-1 PE=1 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 912 | ||||||
| 255545784 | 978 | protein with unknown function [Ricinus c | 0.953 | 0.889 | 0.670 | 0.0 | |
| 302141987 | 970 | unnamed protein product [Vitis vinifera] | 0.973 | 0.915 | 0.652 | 0.0 | |
| 359492457 | 958 | PREDICTED: F-box protein At1g78280-like | 0.960 | 0.914 | 0.648 | 0.0 | |
| 356515772 | 970 | PREDICTED: F-box protein At1g78280-like | 0.942 | 0.886 | 0.648 | 0.0 | |
| 449470096 | 961 | PREDICTED: F-box protein At1g78280-like | 0.925 | 0.878 | 0.650 | 0.0 | |
| 240254396 | 943 | transferase [Arabidopsis thaliana] gi|32 | 0.912 | 0.882 | 0.621 | 0.0 | |
| 297839701 | 901 | transcription factor jumonji domain-cont | 0.882 | 0.893 | 0.593 | 0.0 | |
| 8052543 | 919 | F3F9.18 [Arabidopsis thaliana] | 0.854 | 0.847 | 0.579 | 0.0 | |
| 357465081 | 828 | F-box protein [Medicago truncatula] gi|3 | 0.786 | 0.865 | 0.635 | 0.0 | |
| 293333470 | 953 | uncharacterized protein LOC100383440 [Ze | 0.906 | 0.867 | 0.529 | 0.0 |
| >gi|255545784|ref|XP_002513952.1| protein with unknown function [Ricinus communis] gi|223547038|gb|EEF48535.1| protein with unknown function [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1224 bits (3168), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 587/875 (67%), Positives = 704/875 (80%), Gaps = 5/875 (0%)
Query: 6 QALPVKDRRPDALGDLKIIPDEIICSILEHLTPRDVGRLACVSSVMYIFCNEEPLWMSLC 65
QA VKDRRP+ALG+L+++PDE+IC+ILE+LTPRD RLACVSSVMY+ CNEEPLWMSLC
Sbjct: 7 QAFDVKDRRPEALGNLRVLPDELICAILENLTPRDAARLACVSSVMYVLCNEEPLWMSLC 66
Query: 66 LKKASGVLQYKGSWKKTALHLEDPPIEYDESCTRLLHFDGFYSPFLYRRYYRCHTVLDGF 125
L +A+G LQY+GSWKKTALHLE+ P EY E C R FDGF S FLYRR YRCHT L GF
Sbjct: 67 LNRANGPLQYQGSWKKTALHLENVPDEYKECCGRPRVFDGFSSLFLYRRLYRCHTSLGGF 126
Query: 126 SFDSQLVKRKKIVTREEFDREC-AEEPILLSGLADTWPARNTWTIDQLLTRYGDTAFRIS 184
SFD+ V+R+ ++ EEF + +P+LL+GLAD WPARNTWT+DQL +YGDTAF+IS
Sbjct: 127 SFDTGNVERRNDLSLEEFSHQYDGRKPVLLAGLADDWPARNTWTVDQLSKKYGDTAFKIS 186
Query: 185 QRSVRSISMKFKDYVAYMNVQHDEDPLYIFDYKFGENAQGLLEDYRVPDLFQEDLFNVLD 244
QRS R +SMKFKDY++Y+N QHDEDPLYIFD KFGE A GLL+DY VP LF+ED F VL
Sbjct: 187 QRSSRKVSMKFKDYISYINCQHDEDPLYIFDDKFGETAPGLLKDYSVPHLFEEDYFEVLT 246
Query: 245 GDMRPSYRWVIIGPQRSGASWHVDPALTSAWNTLLCGRKRWALYPPGRVPLGVTVHVNED 304
+ RP +RW+IIGP+RSGASWHVDPALTSAWNTLLCGRKRWALYPPGRVP+GVTVHVN++
Sbjct: 247 REQRPPFRWLIIGPERSGASWHVDPALTSAWNTLLCGRKRWALYPPGRVPIGVTVHVNDE 306
Query: 305 DGDVNIETPSSLEWWLDFYPLLADDDKPIECTQLPGETIVVPSGWWHCILNLETTIAVTQ 364
DGDVN++TPSSL+WWLD+YPLLA++DKPIECTQLPGETI VPSGWWHC+LNLETT+AVTQ
Sbjct: 307 DGDVNVDTPSSLQWWLDYYPLLAEEDKPIECTQLPGETIFVPSGWWHCVLNLETTVAVTQ 366
Query: 365 NFVDSKNFEFVCLDFAPGYRHKGVCRAGLLALEEESLEGGGKNTSAGDHDMSYPDLTRKE 424
NFV+ KNFE+VCLD APGYRHKGVCRAGLLAL+E SL+ +N SY DLTRKE
Sbjct: 367 NFVNPKNFEYVCLDMAPGYRHKGVCRAGLLALDEGSLQDVERNVVNDKDSQSYADLTRKE 426
Query: 425 KRVRVNRCGEIQNHEEDTNGVSKNYNSSKQDFSYDINFLAKFLDEDRDHYNFPWSSGNCT 484
KRVR+ + E +E +G K+Y + DF+YDI FL KFLDEDRDHYN PWS GN
Sbjct: 427 KRVRIQKPREDPEYEMTIDGDFKSYECWRHDFAYDIKFLGKFLDEDRDHYNSPWSPGNSI 486
Query: 485 GKREMREWLYKLWVGKPEMRELIWKGACLALNAGKWLELLEEICNFHKLPTLTAEEKLPV 544
G+REMR WL KLWV KPEMRELIWKGACLALNAGKWL L EIC FH LP +EKLPV
Sbjct: 487 GQREMRGWLSKLWVQKPEMRELIWKGACLALNAGKWLNCLAEICAFHNLPPPQDDEKLPV 546
Query: 545 GNGSNPVYLMADCVVKIFVEGGFESSIYGLGTELEFYSLLAKVNSPLKNYIPDVLASGIL 604
G GSNPVYL+AD VKIFVEGG E+S+YGLGTELEFYS+L KVNSPL+N+IP+ LASGIL
Sbjct: 547 GTGSNPVYLLADHAVKIFVEGGLEASMYGLGTELEFYSVLHKVNSPLRNHIPETLASGIL 606
Query: 605 YVENGSYTIVPWDGKGVLDVIGKCNLTLLNCKQEEFPFGIWSKKQFEYRSAWMSVSKLST 664
Y++NG++ IVPWDGKGV +I C+ K +EFPFG+W+KKQ+E+R+A MSV++ +
Sbjct: 607 YLDNGTHRIVPWDGKGVPTMIENCDFIPQKFKNDEFPFGVWAKKQYEWRTAGMSVNEQTN 666
Query: 665 SDGCNRIWPYIITKRCKGKMFAQLRDALSGEDVLNLASFLGEQLRNLHLLPCPPFNESSL 724
+ C ++WP+I+TKRCKGK+FA+LR+ LS ED LNLASFLGEQL NLHLLP PPFN+S+
Sbjct: 667 AARCTQMWPFIVTKRCKGKIFAELRETLSWEDALNLASFLGEQLCNLHLLPYPPFNKSNF 726
Query: 725 SDKLKTEPPFN--NGFVEDVVDTSSVPAEWEIFIRTLARKKKNLVNRLTAWGHPIPKALI 782
S+ ++ E F NG +E++ S +PAE+ IFIRTL++KKK++++RL WG PIP LI
Sbjct: 727 SE-IEQEMGFTCANGSMEELSYKSDIPAEYNIFIRTLSKKKKDVISRLRNWGDPIPGTLI 785
Query: 783 DKVDEYIPDDFVKLLDIYQDENGLNKVCKPCSWIHSDIMDDNVYMEPCCASSRSNGNAAD 842
KV EYIPDD KLL+ YQ++NG+N +CKPCSWIHSD+MDDNV+MEP S NGN+AD
Sbjct: 786 QKVHEYIPDDLTKLLEPYQNQNGMNSICKPCSWIHSDVMDDNVHMEPNWVSPCLNGNSAD 845
Query: 843 TGPMVNGSINGYDEFGEAKSWHCSHIIDFSNLSIG 877
+V+ NGY + KSW HIIDFSNLSIG
Sbjct: 846 AC-LVDSGSNGYKNGRDDKSWRPGHIIDFSNLSIG 879
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302141987|emb|CBI19190.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|359492457|ref|XP_002284081.2| PREDICTED: F-box protein At1g78280-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356515772|ref|XP_003526572.1| PREDICTED: F-box protein At1g78280-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449470096|ref|XP_004152754.1| PREDICTED: F-box protein At1g78280-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|240254396|ref|NP_177951.6| transferase [Arabidopsis thaliana] gi|322510131|sp|Q9M9E8.3|FB92_ARATH RecName: Full=F-box protein At1g78280 gi|332197969|gb|AEE36090.1| transferase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|297839701|ref|XP_002887732.1| transcription factor jumonji domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297333573|gb|EFH63991.1| transcription factor jumonji domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|8052543|gb|AAF71807.1|AC013430_16 F3F9.18 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|357465081|ref|XP_003602822.1| F-box protein [Medicago truncatula] gi|355491870|gb|AES73073.1| F-box protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|293333470|ref|NP_001169561.1| uncharacterized protein LOC100383440 [Zea mays] gi|224030097|gb|ACN34124.1| unknown [Zea mays] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 912 | ||||||
| TAIR|locus:2032090 | 943 | AT1G78280 [Arabidopsis thalian | 0.881 | 0.852 | 0.634 | 2.6e-301 | |
| DICTYBASE|DDB_G0270006 | 983 | jcdI "transcription factor jum | 0.401 | 0.372 | 0.418 | 1.5e-86 | |
| TAIR|locus:2144153 | 502 | AT5G06550 "AT5G06550" [Arabido | 0.390 | 0.709 | 0.387 | 6.7e-65 | |
| DICTYBASE|DDB_G0280485 | 536 | jcdH "transcription factor jum | 0.326 | 0.555 | 0.379 | 1.3e-58 | |
| ZFIN|ZDB-GENE-040426-17 | 403 | jmjd6 "jumonji domain containi | 0.253 | 0.573 | 0.440 | 9.9e-51 | |
| UNIPROTKB|G4MKL9 | 505 | MGG_04401 "F-box and JmjC doma | 0.362 | 0.655 | 0.337 | 9.1e-49 | |
| UNIPROTKB|Q6Q4H1 | 385 | PSR "Bifunctional arginine dem | 0.258 | 0.612 | 0.392 | 3.9e-47 | |
| UNIPROTKB|Q6NYC1 | 403 | JMJD6 "Bifunctional arginine d | 0.253 | 0.573 | 0.420 | 5e-47 | |
| UNIPROTKB|Q5R6G2 | 403 | JMJD6 "Bifunctional arginine d | 0.253 | 0.573 | 0.420 | 5e-47 | |
| UNIPROTKB|Q6GND3 | 403 | jmjd6-a "Bifunctional arginine | 0.253 | 0.573 | 0.420 | 8.3e-47 |
| TAIR|locus:2032090 AT1G78280 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2848 (1007.6 bits), Expect = 2.6e-301, Sum P(2) = 2.6e-301
Identities = 522/823 (63%), Positives = 631/823 (76%)
Query: 11 KDRRPDALGDLKIIPDEIICSILEHLTPRDVGRLACVSSVMYIFCNEEPLWMSLCLKKAS 70
+DRRPDALG L ++PDE IC +LE+L PRD+ LACVSSVMYI CNEEPLWMSLCL++A
Sbjct: 7 RDRRPDALGSLSVLPDETICVLLEYLAPRDIAHLACVSSVMYILCNEEPLWMSLCLRRAK 66
Query: 71 GVLQYKGSWKKTALHLEDPPIEYDESCTRLLHFDGFYSPFLYRRYYRCHTVLDGFSFDSQ 130
G L+YKGSWKKT LHLE E D + + HFDGF S +LY+R+YRC+T LDGFSFD+
Sbjct: 67 GPLEYKGSWKKTTLHLEGVTQEND-AYRKCFHFDGFMSLYLYKRFYRCNTSLDGFSFDNG 125
Query: 131 LVKRKKIVTREEFDREC-AEEPILLSGLADTWPARNTWTIDQLLTRYGDTAFRISQRSVR 189
V+R++ ++ +EF +E A++P+LLSGLAD+WPA NTWTIDQL +YG+ FRISQRS
Sbjct: 126 NVERRRNISLDEFSKEYDAKKPVLLSGLADSWPASNTWTIDQLSEKYGEVPFRISQRSPN 185
Query: 190 SISMKFKDYVAYMNVQHDEDPLYIFDYKFGENAQGLLEDYRVPDLFQEDLFNVLDGDMRP 249
ISMKFKDY+AYM Q DEDPLY+FD KFGE A LL+DY VP LFQED F +LD + RP
Sbjct: 186 KISMKFKDYIAYMKTQRDEDPLYVFDDKFGEAAPELLKDYSVPHLFQEDWFEILDKESRP 245
Query: 250 SYRWVIIGPQRSGASWHVDPALTSAWNTLLCGRKRWALYPPGRVPLGVTVHVNEDDGDVN 309
YRW+I+GP+RSGASWHVDPALTSAWNTLLCGRKRWALYPPG+VPLGVTVHVNEDDGDV+
Sbjct: 246 PYRWLIVGPERSGASWHVDPALTSAWNTLLCGRKRWALYPPGKVPLGVTVHVNEDDGDVS 305
Query: 310 IETPSSLEWWLDFYPLLADDDKPIECTQLPGETIVVPSGWWHCILNLETTIAVTQNFVDS 369
I+TPSSL+WWLD+YPLLAD+DKPIECT LPGETI VPSGWWHCILNLE T+AVTQNFV+
Sbjct: 306 IDTPSSLQWWLDYYPLLADEDKPIECTLLPGETIYVPSGWWHCILNLEPTVAVTQNFVNK 365
Query: 370 KNFEFVCLDFAPGYRHKGVCRXXXXXXXXXXXXXXXKNT-SAGDHDMSYPDLTRKEKRVR 428
+NF FVCLD APGY HKGVCR + T D+ +SY DLTRKEKR R
Sbjct: 366 ENFGFVCLDMAPGYHHKGVCRAGLLALDDENSEDLEEETHDEEDNTLSYSDLTRKEKRTR 425
Query: 429 VNRCGEIQNHEEDTNGVSKNYNSSKQDFSYDINFLAKFLDEDRDHYNFPWSSGNCTGKRE 488
+N GE +N EED NGVSK YN K FSYDI+FLA FLD++RDHYNFPWS GN G+RE
Sbjct: 426 MNGGGETENREEDVNGVSKRYNMWKNGFSYDIDFLASFLDKERDHYNFPWSMGNSVGQRE 485
Query: 489 MREWLYKLWVGKPEMRELIWKGACLALNAGKWLELLEEICNFHKLPTLTAEEKLPVGNGS 548
MR WL KLWV KPEMRELIWKGAC+ALNA KWL LEE+C FH LP +T +EKLPVG GS
Sbjct: 486 MRAWLSKLWVLKPEMRELIWKGACIALNAEKWLRCLEEVCTFHNLPLVTEDEKLPVGTGS 545
Query: 549 NPVYLMADCVVKIFVEGGFESSIYGLGTELEFYSLLAKVNSPLKNYIPDVLASGILYVEN 608
NPVYL++D +K+FVEGG E S+YGLGTELEFY +L + +SPLK +IP+VLASGIL+ E
Sbjct: 546 NPVYLLSDYAIKLFVEGGLEQSMYGLGTELEFYDILGRADSPLKTHIPEVLASGILFFEK 605
Query: 609 GSYTIVPWDGKGVLDVIGKCNLTL-LNCKQEEFPFGIWSKKQFEYRSAWMSVSKLSTSDG 667
GSY +VPWDGK + D+I + + EFPFGIW+K E+++ S
Sbjct: 606 GSYKVVPWDGKRIPDIISSSSFDFDASMLNSEFPFGIWNKTLREHKNQGKPAPD-SFGSL 664
Query: 668 CNRIWPYIITKRCKGKMFAQLRDALSGEDVLNLASFLGEQLRNLHLLPCPPFNESSLSDK 727
+ +WPYIITKRCKGK+FAQLRD L+ D NLA FLG+QLRNLHLLP PP
Sbjct: 665 SSHVWPYIITKRCKGKIFAQLRDDLTWNDAQNLAFFLGQQLRNLHLLPYPPV-------- 716
Query: 728 LKTEPPFNNGFVEDVVDTSSVPAEWEIFIRTLARKKKNLVNRLTAWGHPIPKALIDKVDE 787
T P N V V + ++PAEW++F+ L +KKK++ +RL WG+PIP+AL+ K+DE
Sbjct: 717 --TRPELLN--VNAVHEELNIPAEWKVFVDALCQKKKDVTSRLENWGNPIPRALMTKIDE 772
Query: 788 YIPDDF-VKLLDIYQDENGLNKVCKPCSWIHSDIMDDNVYMEP 829
YIPDDF V LL ++++ NG +++ KPC+WIHSD+MDDN++MEP
Sbjct: 773 YIPDDFFVDLLHVFKETNGGDEI-KPCTWIHSDVMDDNIHMEP 814
|
|
| DICTYBASE|DDB_G0270006 jcdI "transcription factor jumonji, jmjC domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2144153 AT5G06550 "AT5G06550" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0280485 jcdH "transcription factor jumonji, jmjC domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-040426-17 jmjd6 "jumonji domain containing 6" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|G4MKL9 MGG_04401 "F-box and JmjC domain-containing protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q6Q4H1 PSR "Bifunctional arginine demethylase and lysyl-hydroxylase PSR" [Hydra vulgaris (taxid:6087)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q6NYC1 JMJD6 "Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5R6G2 JMJD6 "Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q6GND3 jmjd6-a "Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6-A" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9M9E8 | FB92_ARATH | No assigned EC number | 0.6218 | 0.9122 | 0.8822 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.14.11 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 912 | |||
| pfam13621 | 247 | pfam13621, Cupin_8, Cupin-like domain | 7e-18 | |
| pfam02373 | 114 | pfam02373, JmjC, JmjC domain, hydroxylase | 2e-14 | |
| pfam12937 | 47 | pfam12937, F-box-like, F-box-like | 6e-08 | |
| pfam00646 | 48 | pfam00646, F-box, F-box domain | 0.001 | |
| smart00256 | 41 | smart00256, FBOX, A Receptor for Ubiquitination Ta | 0.003 |
| >gnl|CDD|222269 pfam13621, Cupin_8, Cupin-like domain | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 7e-18
Identities = 70/265 (26%), Positives = 104/265 (39%), Gaps = 52/265 (19%)
Query: 141 EEFDRE--CAEEPILLSGLADTWPARNTWT--IDQLLTRYGDTAFRISQR---------- 186
EEF RE +P++L G A WPA WT +D L +YGD +
Sbjct: 2 EEFFREYVAKRKPVVLKGAAKDWPAVKKWTDALDYLKEKYGDVEVSVEVTPPGRADRFFY 61
Query: 187 -------SVRSISMKFKDYVAYMN---VQHDEDPLYIFDYKFGENAQGLLEDYRVPDLFQ 236
+ + M FKD++ + Q LY+ GL ED +P
Sbjct: 62 NDDLSGVNFKEERMPFKDFLDLLRAGSDQETPPYLYLQSSNLDSEFPGLREDNDLP--LA 119
Query: 237 EDLFNVLDGDMRPSYR-WVIIGPQRSGASWHVDPALTSAWNTLLC---GRKRWALYPPGR 292
+ F L + W IG + S H D L C GRKR+ L+PP +
Sbjct: 120 PEAFGKLP----QAVNLW--IGNGGTTTSLHYDAY-----ENLYCVVSGRKRFTLFPPSQ 168
Query: 293 VPLGVTVHVNEDDG----DVNIETPSSLEWWLDFYPLLADDDKPIECTQLPGETIVVPSG 348
VP ++ G V+ + P L+ +P D K + PG+ + +P+G
Sbjct: 169 VPNLYPGPLDRTGGQPFSLVDPDNPD-----LEKFPRFKDA-KALVAELEPGDALYIPAG 222
Query: 349 WWHCILNLE-TTIAVTQNFVDSKNF 372
WWH + +L+ IAV F +F
Sbjct: 223 WWHHVRSLDDFNIAVNYWFDPPFDF 247
|
This cupin like domain shares similarity to the JmjC domain. Length = 247 |
| >gnl|CDD|202224 pfam02373, JmjC, JmjC domain, hydroxylase | Back alignment and domain information |
|---|
| >gnl|CDD|221867 pfam12937, F-box-like, F-box-like | Back alignment and domain information |
|---|
| >gnl|CDD|201368 pfam00646, F-box, F-box domain | Back alignment and domain information |
|---|
| >gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 912 | |||
| KOG2130 | 407 | consensus Phosphatidylserine-specific receptor Ptd | 100.0 | |
| PF13621 | 251 | Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU | 100.0 | |
| KOG2131 | 427 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG2132 | 355 | consensus Uncharacterized conserved protein, conta | 99.93 | |
| KOG2508 | 437 | consensus Predicted phospholipase [Lipid transport | 99.86 | |
| cd05155 | 235 | APH_ChoK_like_1 Uncharacterized bacterial proteins | 99.54 | |
| PF01636 | 239 | APH: Phosphotransferase enzyme family This family | 99.44 | |
| cd05154 | 223 | ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an | 99.37 | |
| cd05152 | 276 | MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH | 99.36 | |
| cd05150 | 244 | APH Aminoglycoside 3'-phosphotransferase (APH). Th | 99.34 | |
| PF02373 | 114 | JmjC: JmjC domain, hydroxylase; InterPro: IPR01312 | 99.34 | |
| COG2850 | 383 | Uncharacterized conserved protein [Function unknow | 99.32 | |
| TIGR02172 | 226 | Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou | 99.23 | |
| PLN02876 | 822 | acyl-CoA dehydrogenase | 99.2 | |
| PF08007 | 319 | Cupin_4: Cupin superfamily protein; InterPro: IPR0 | 99.18 | |
| COG3173 | 321 | Predicted aminoglycoside phosphotransferase [Gener | 98.99 | |
| cd05153 | 296 | HomoserineK_II Homoserine Kinase, type II. Homoser | 98.98 | |
| KOG1356 | 889 | consensus Putative transcription factor 5qNCA, con | 98.96 | |
| KOG2997 | 366 | consensus F-box protein FBX9 [General function pre | 98.95 | |
| PRK10593 | 297 | hypothetical protein; Provisional | 98.85 | |
| KOG1633 | 776 | consensus F-box protein JEMMA and related proteins | 98.85 | |
| PF12937 | 47 | F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B | 98.85 | |
| TIGR00938 | 307 | thrB_alt homoserine kinase, Neisseria type. Homose | 98.73 | |
| PRK11768 | 325 | serine/threonine protein kinase; Provisional | 98.69 | |
| KOG3706 | 629 | consensus Uncharacterized conserved protein [Funct | 98.6 | |
| PRK05231 | 319 | homoserine kinase; Provisional | 98.59 | |
| cd05151 | 170 | ChoK Choline Kinase (ChoK). The ChoK subfamily is | 98.57 | |
| TIGR02721 | 256 | ycfN_thiK thiamine kinase. Members of this family | 98.49 | |
| cd05157 | 235 | ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes. | 98.32 | |
| cd05120 | 155 | APH_ChoK_like Aminoglycoside 3'-phosphotransferase | 98.27 | |
| COG2334 | 331 | Putative homoserine kinase type II (protein kinase | 98.2 | |
| smart00256 | 41 | FBOX A Receptor for Ubiquitination Targets. | 98.14 | |
| PF03881 | 288 | Fructosamin_kin: Fructosamine kinase; InterPro: IP | 98.13 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 98.1 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 98.07 | |
| cd05156 | 302 | ChoK_euk Choline Kinase (ChoK) in eukaryotes. The | 97.99 | |
| PF00646 | 48 | F-box: F-box domain; InterPro: IPR001810 The F-box | 97.96 | |
| COG3001 | 286 | Uncharacterized protein conserved in bacteria [Fun | 97.71 | |
| PLN02236 | 344 | choline kinase | 97.66 | |
| TIGR02904 | 309 | spore_ysxE spore coat protein YsxE. Members of thi | 97.5 | |
| TIGR02906 | 313 | spore_CotS spore coat protein, CotS family. Member | 97.44 | |
| COG3231 | 266 | Aph Aminoglycoside phosphotransferase [Translation | 97.37 | |
| PRK09550 | 401 | mtnK methylthioribose kinase; Reviewed | 97.35 | |
| PLN02756 | 418 | S-methyl-5-thioribose kinase | 97.15 | |
| PLN02421 | 330 | phosphotransferase, alcohol group as acceptor/kina | 97.0 | |
| PRK14879 | 211 | serine/threonine protein kinase; Provisional | 96.96 | |
| PF07914 | 414 | DUF1679: Protein of unknown function (DUF1679); In | 96.89 | |
| COG2140 | 209 | Thermophilic glucose-6-phosphate isomerase and rel | 96.88 | |
| PTZ00296 | 442 | choline kinase; Provisional | 96.88 | |
| PF04655 | 253 | APH_6_hur: Aminoglycoside/hydroxyurea antibiotic r | 96.76 | |
| KOG1164 | 322 | consensus Casein kinase (serine/threonine/tyrosine | 96.69 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 96.67 | |
| PRK10271 | 188 | thiK thiamine kinase; Provisional | 96.65 | |
| PTZ00384 | 383 | choline kinase; Provisional | 96.42 | |
| smart00558 | 57 | JmjC A domain family that is part of the cupin met | 96.22 | |
| TIGR02457 | 528 | TreS_Cterm trehalose synthase-fused probable malto | 96.22 | |
| TIGR03724 | 199 | arch_bud32 Kae1-associated kinase Bud32. Members o | 96.19 | |
| PF01633 | 211 | Choline_kinase: Choline/ethanolamine kinase; Inter | 95.74 | |
| PF06881 | 109 | Elongin_A: RNA polymerase II transcription factor | 94.66 | |
| smart00587 | 196 | CHK ZnF_C4 abd HLH domain containing kinases domai | 94.65 | |
| PF02958 | 294 | EcKinase: Ecdysteroid kinase; InterPro: IPR004119 | 94.16 | |
| PF00190 | 144 | Cupin_1: Cupin; InterPro: IPR006045 This family re | 93.64 | |
| cd00180 | 215 | PKc Catalytic domain of Protein Kinases. Protein K | 93.58 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 93.31 | |
| KOG0583 | 370 | consensus Serine/threonine protein kinase [Signal | 93.2 | |
| TIGR03404 | 367 | bicupin_oxalic bicupin, oxalate decarboxylase fami | 93.12 | |
| KOG2132 | 355 | consensus Uncharacterized conserved protein, conta | 93.01 | |
| PF06560 | 182 | GPI: Glucose-6-phosphate isomerase (GPI); InterPro | 92.87 | |
| PRK09605 | 535 | bifunctional UGMP family protein/serine/threonine | 92.85 | |
| PRK04190 | 191 | glucose-6-phosphate isomerase; Provisional | 92.52 | |
| PF06293 | 206 | Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; | 91.94 | |
| TIGR03037 | 159 | anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase | 91.24 | |
| PRK15123 | 268 | lipopolysaccharide core heptose(I) kinase RfaP; Pr | 90.43 | |
| KOG1163 | 341 | consensus Casein kinase (serine/threonine/tyrosine | 90.14 | |
| PRK13264 | 177 | 3-hydroxyanthranilate 3,4-dioxygenase; Provisional | 90.12 | |
| KOG0596 | 677 | consensus Dual specificity; serine/threonine and t | 89.83 | |
| KOG3926 | 332 | consensus F-box proteins [Amino acid transport and | 89.7 | |
| cd05084 | 252 | PTKc_Fes Catalytic domain of the Protein Tyrosine | 88.13 | |
| PRK01723 | 239 | 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed | 87.78 | |
| cd06621 | 287 | PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek | 87.45 | |
| cd05097 | 295 | PTKc_DDR_like Catalytic domain of Discoidin Domain | 87.28 | |
| PRK09902 | 216 | hypothetical protein; Provisional | 86.92 | |
| cd05059 | 256 | PTKc_Tec_like Catalytic domain of Tec-like Protein | 86.52 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 86.14 | |
| cd05611 | 260 | STKc_Rim15_like Catalytic domain of fungal Rim15-l | 86.1 | |
| COG3178 | 351 | Predicted phosphotransferase related to Ser/Thr pr | 85.97 | |
| TIGR01767 | 370 | MTRK 5-methylthioribose kinase. This enzyme is inv | 85.56 | |
| cd05079 | 284 | PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the | 85.24 | |
| cd06623 | 264 | PKc_MAPKK_plant_like Catalytic domain of Plant dua | 85.21 | |
| cd05122 | 253 | PKc_STE Catalytic domain of STE family Protein Kin | 84.89 | |
| cd05088 | 303 | PTKc_Tie2 Catalytic domain of the Protein Tyrosine | 84.65 | |
| cd05098 | 307 | PTKc_FGFR1 Catalytic domain of the Protein Tyrosin | 84.33 | |
| cd00192 | 262 | PTKc Catalytic domain of Protein Tyrosine Kinases. | 84.19 | |
| smart00835 | 146 | Cupin_1 Cupin. This family represents the conserve | 84.03 | |
| cd06614 | 286 | STKc_PAK Catalytic domain of the Protein Serine/Th | 83.58 | |
| cd06627 | 254 | STKc_Cdc7_like Catalytic domain of Cell division c | 83.34 | |
| cd05061 | 288 | PTKc_InsR Catalytic domain of the Protein Tyrosine | 83.06 | |
| cd08219 | 255 | STKc_Nek3 Catalytic domain of the Protein Serine/T | 82.96 | |
| KOG1989 | 738 | consensus ARK protein kinase family [Signal transd | 82.81 | |
| TIGR02466 | 201 | conserved hypothetical protein. This family consis | 82.47 | |
| cd06640 | 277 | STKc_MST4 Catalytic domain of the Protein Serine/T | 82.44 | |
| KOG1166 | 974 | consensus Mitotic checkpoint serine/threonine prot | 82.3 | |
| cd06622 | 286 | PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS | 82.27 | |
| KOG0670 | 752 | consensus U4/U6-associated splicing factor PRP4 [R | 82.18 | |
| TIGR03404 | 367 | bicupin_oxalic bicupin, oxalate decarboxylase fami | 82.17 | |
| cd05033 | 266 | PTKc_EphR Catalytic domain of Ephrin Receptor Prot | 82.04 | |
| cd05574 | 316 | STKc_phototropin_like Catalytic domain of Phototro | 81.94 | |
| cd08529 | 256 | STKc_FA2-like Catalytic domain of the Protein Seri | 81.82 | |
| cd05044 | 269 | PTKc_c-ros Catalytic domain of the Protein Tyrosin | 81.8 | |
| cd06642 | 277 | STKc_STK25-YSK1 Catalytic domain of the Protein Se | 81.76 | |
| PF13759 | 101 | 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB | 81.51 | |
| PF06052 | 151 | 3-HAO: 3-hydroxyanthranilic acid dioxygenase; Inte | 81.42 | |
| cd05036 | 277 | PTKc_ALK_LTK Catalytic domain of the Protein Tyros | 81.41 | |
| cd05034 | 261 | PTKc_Src_like Catalytic domain of Src kinase-like | 81.25 | |
| cd05080 | 283 | PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the | 81.21 | |
| cd06917 | 277 | STKc_NAK1_like Catalytic domain of Fungal Nak1-lik | 81.1 | |
| cd05101 | 304 | PTKc_FGFR2 Catalytic domain of the Protein Tyrosin | 80.79 | |
| cd05055 | 302 | PTKc_PDGFR Catalytic domain of the Protein Tyrosin | 80.72 | |
| cd05076 | 274 | PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th | 80.68 | |
| cd06620 | 284 | PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr | 80.49 | |
| cd05085 | 250 | PTKc_Fer Catalytic domain of the Protein Tyrosine | 80.25 | |
| PF07883 | 71 | Cupin_2: Cupin domain; InterPro: IPR013096 This fa | 80.23 | |
| COG1917 | 131 | Uncharacterized conserved protein, contains double | 80.19 | |
| cd08228 | 267 | STKc_Nek6 Catalytic domain of the Protein Serine/T | 80.14 |
| >KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-74 Score=603.30 Aligned_cols=395 Identities=44% Similarity=0.786 Sum_probs=352.2
Q ss_pred HhHHHHHHccChhhHHHHHHhhcCCCccccCccceeecccCCCCCccccccccccccCCCCcccccccccccccccCCCc
Q 002526 47 VSSVMYIFCNEEPLWMSLCLKKASGVLQYKGSWKKTALHLEDPPIEYDESCTRLLHFDGFYSPFLYRRYYRCHTVLDGFS 126 (912)
Q Consensus 47 vsR~fY~~~~ddeLWr~l~l~~~~~~~~~~gSWR~Tyl~~~~l~~~~~~~~~~~~~~~~~~Sd~Lyr~~~~~~~~L~~~~ 126 (912)
||..+|.+|+++.+||.+|++...+.+.+. +||.+|.+|+||...+.+++
T Consensus 1 vs~~~y~~~n~~~~kr~~~~kr~arpel~~------------------------------~~~w~~~~y~e~f~~~~~~~ 50 (407)
T KOG2130|consen 1 VSSSMYILCNHEPLKRSLELKRKARPELYK------------------------------MSDWLYKRYYESFTLLDPFF 50 (407)
T ss_pred CccceeeecCcchHHHHHHHHHhcChhhhh------------------------------hhhHHHHHHHHhccccCccc
Confidence 467899999999999999999877665432 58999999999999999999
Q ss_pred cCCCCccccCCCCHHHHHHHh--ccCCcccccccCCCccccCCcHHHHHHHhCCeeEEEEecC-CceEEeeHHHHHHHHh
Q 002526 127 FDSQLVKRKKIVTREEFDREC--AEEPILLSGLADTWPARNTWTIDQLLTRYGDTAFRISQRS-VRSISMKFKDYVAYMN 203 (912)
Q Consensus 127 ~~~~~IeRv~~LS~eeF~e~y--~nkPVIItG~~~~WPA~~kWT~dyL~e~~GD~~V~V~~~s-~~~~~mtf~dFldyl~ 203 (912)
++..+++|..++|.+||.++| +++||||+|++.+|||.++||.|+|.++||+++|.+.+.. +..++|+|+.|++||+
T Consensus 51 ~dn~~r~~~~~isveeF~~~ferp~kPVll~g~~DgW~A~ekWT~drLskkyrnq~Fkcged~~gnsv~MKmkyY~~Ym~ 130 (407)
T KOG2130|consen 51 FDNGNRERRRNISVEEFIERFERPYKPVLLSGLTDGWPASEKWTLDRLSKKYRNQKFKCGEDNNGNSVKMKMKYYIEYMK 130 (407)
T ss_pred cccchhhhhcCCCHHHHHHHhcccCCceEeeccccCCchhhhhhHHHHHHHhcCccccccccCCCcceeeeHHHHHHHHh
Confidence 999999999999999999999 9999999999999999999999999999999999998765 6789999999999999
Q ss_pred hcCCCCCeEEeccccccchh--hhhhccCCCCccccchhcccCCCCCCCcceEEecCCCCCCccccCCCCCcccEEEEEe
Q 002526 204 VQHDEDPLYIFDYKFGENAQ--GLLEDYRVPDLFQEDLFNVLDGDMRPSYRWVIIGPQRSGASWHVDPALTSAWNTLLCG 281 (912)
Q Consensus 204 ~~~de~plYLfD~~f~e~~P--~L~~Dy~vP~~F~eDlf~~L~~~~RPd~rwL~IGp~GSgTplH~Dp~~TsawnaqI~G 281 (912)
.+.+++|||+||..|+++.| .|.+||.||.||.+|+|.+++...||+|||++|||++|||.+|+||.+|+|||++|+|
T Consensus 131 ~~RddsPLYiFDssFgE~~~~rkLl~dY~VPk~F~dDlF~y~g~e~RPpyRWfvmGParSGtsiHIDPlgTSAWNtll~G 210 (407)
T KOG2130|consen 131 STRDDSPLYIFDSSFGEHAPRRKLLEDYSVPKYFRDDLFQYLGEERRPPYRWFVMGPARSGTSIHIDPLGTSAWNTLLQG 210 (407)
T ss_pred ccccCCCeEEecchhhcccchhhhhhhcCcchhhhHHHHHhcCcccCCCceeEEecCCCCCceeEECCcchHHHHHHhhc
Confidence 99999999999999999999 8999999999999999999998889999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCcceeeecCCCCCccCCCCcch-hhhhhcC-----CCCCCCCCCEEEEEcCCCEEEeCCCCceeeEe
Q 002526 282 RKRWALYPPGRVPLGVTVHVNEDDGDVNIETPSSL-EWWLDFY-----PLLADDDKPIECTQLPGETIVVPSGWWHCILN 355 (912)
Q Consensus 282 rKrWiLfPP~~~p~gv~~~~~~~~s~Vdv~sPdsl-eW~l~~y-----P~l~~a~~~~E~vLePGDvLFVPsGWWHqV~N 355 (912)
+|||.||||+..|.++.+++++. + ..|+++ .||...| |.+....+|+||+|.|||+||||+||||.|.|
T Consensus 211 hKrW~LfPp~~p~~lvkv~~~e~-g----~~~de~itwf~~~y~rt~~Pswp~E~kPIEc~q~pGEt~fVP~GWWHvVlN 285 (407)
T KOG2130|consen 211 HKRWVLFPPGTPPELVKVTVDEG-G----KQPDEIITWFSTIYPRTQLPSWPDEYKPIECLQKPGETMFVPSGWWHVVLN 285 (407)
T ss_pred cceeEEcCCCCCCCceeeccccc-C----CCCcceechhhhccccccCCCCccccCCceeeecCCceEEecCCeEEEEec
Confidence 99999999999998886554322 2 345543 6775554 55555578999999999999999999999999
Q ss_pred CCCcEEEeecccCCCCHHHHHHhhccCcccccchhhhhhcccchhhccccCccCCCC-CCCCcchhhHHHHHHhhhccCc
Q 002526 356 LETTIAVTQNFVDSKNFEFVCLDFAPGYRHKGVCRAGLLALEEESLEGGGKNTSAGD-HDMSYPDLTRKEKRVRVNRCGE 434 (912)
Q Consensus 356 LddSIAVn~NFv~~~NL~~vl~dl~~gf~~~~~~rag~~~~~~~~~e~~~~~~~~~~-~~~~~~d~~~~~~r~~~~~~~~ 434 (912)
+++||||||||++..|++.||.++++|+.+..++++++++++...++++.+....++ +|+++.+..+++++-+......
T Consensus 286 le~TIAiTqNf~s~eNf~~Vw~ktv~Grpkls~~w~~~L~~~~pel~~l~~s~~~~e~~~~~~~sss~ssssssss~~~s 365 (407)
T KOG2130|consen 286 LEPTIAITQNFASKENFPFVWHKTVRGRPKLSRKWARLLALQRPELADLADSTHLEESTGLASDSSSDSSSSSSSSSSSS 365 (407)
T ss_pred cCceeeeeeccccccCCceeeecccCCCcchhhHHHHHHhhcChhHHHHhhhhccccccCcccccccccccccccCCCCC
Confidence 999999999999999999999999999999999999999999999999999887766 7999999999999888765555
Q ss_pred CCcccccccccccccCCCCcccccchhHHHHhhhhccccCcCCCCCCCCCchhhHH
Q 002526 435 IQNHEEDTNGVSKNYNSSKQDFSYDINFLAKFLDEDRDHYNFPWSSGNCTGKREMR 490 (912)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 490 (912)
+.+ |...++. +-+|.++.+++ +++.. +++|+.+|+.|||+|+
T Consensus 366 ~e~-e~d~~G~-------~gg~~~~~d~r---m~~~~---s~p~~m~~s~gq~~~~ 407 (407)
T KOG2130|consen 366 DEE-ESDDNGD-------NGGFKRKKDRR---MDGNG---SFPSSMGNSVGQRSMR 407 (407)
T ss_pred ccc-cccccCc-------ccccccchhhh---hhcCC---CCccccccccccccCC
Confidence 444 3333333 23899999997 55555 7899999999999874
|
|
| >PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A | Back alignment and domain information |
|---|
| >KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members | Back alignment and domain information |
|---|
| >PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily | Back alignment and domain information |
|---|
| >cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins | Back alignment and domain information |
|---|
| >cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2') | Back alignment and domain information |
|---|
| >cd05150 APH Aminoglycoside 3'-phosphotransferase (APH) | Back alignment and domain information |
|---|
| >PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [] | Back alignment and domain information |
|---|
| >COG2850 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172 | Back alignment and domain information |
|---|
| >PLN02876 acyl-CoA dehydrogenase | Back alignment and domain information |
|---|
| >PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors | Back alignment and domain information |
|---|
| >COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only] | Back alignment and domain information |
|---|
| >cd05153 HomoserineK_II Homoserine Kinase, type II | Back alignment and domain information |
|---|
| >KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription] | Back alignment and domain information |
|---|
| >KOG2997 consensus F-box protein FBX9 [General function prediction only] | Back alignment and domain information |
|---|
| >PRK10593 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B | Back alignment and domain information |
|---|
| >TIGR00938 thrB_alt homoserine kinase, Neisseria type | Back alignment and domain information |
|---|
| >PRK11768 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
| >KOG3706 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PRK05231 homoserine kinase; Provisional | Back alignment and domain information |
|---|
| >cd05151 ChoK Choline Kinase (ChoK) | Back alignment and domain information |
|---|
| >TIGR02721 ycfN_thiK thiamine kinase | Back alignment and domain information |
|---|
| >cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes | Back alignment and domain information |
|---|
| >cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family | Back alignment and domain information |
|---|
| >COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only] | Back alignment and domain information |
|---|
| >smart00256 FBOX A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
| >PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein [] | Back alignment and domain information |
|---|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes | Back alignment and domain information |
|---|
| >PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] | Back alignment and domain information |
|---|
| >COG3001 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >PLN02236 choline kinase | Back alignment and domain information |
|---|
| >TIGR02904 spore_ysxE spore coat protein YsxE | Back alignment and domain information |
|---|
| >TIGR02906 spore_CotS spore coat protein, CotS family | Back alignment and domain information |
|---|
| >COG3231 Aph Aminoglycoside phosphotransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK09550 mtnK methylthioribose kinase; Reviewed | Back alignment and domain information |
|---|
| >PLN02756 S-methyl-5-thioribose kinase | Back alignment and domain information |
|---|
| >PLN02421 phosphotransferase, alcohol group as acceptor/kinase | Back alignment and domain information |
|---|
| >PRK14879 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
| >PF07914 DUF1679: Protein of unknown function (DUF1679); InterPro: IPR012877 This region is found in a number of Caenorhabditis elegans and Caenorhabditis briggsae proteins, in one case (Q19034 from SWISSPROT) as a repeat | Back alignment and domain information |
|---|
| >COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
| >PTZ00296 choline kinase; Provisional | Back alignment and domain information |
|---|
| >PF04655 APH_6_hur: Aminoglycoside/hydroxyurea antibiotic resistance kinase; InterPro: IPR006748 The aminoglycosides are a large group of biologically active bacterial secondary metabolites, best known for their antibiotic properties [] | Back alignment and domain information |
|---|
| >KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK10271 thiK thiamine kinase; Provisional | Back alignment and domain information |
|---|
| >PTZ00384 choline kinase; Provisional | Back alignment and domain information |
|---|
| >smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily | Back alignment and domain information |
|---|
| >TIGR02457 TreS_Cterm trehalose synthase-fused probable maltokinase | Back alignment and domain information |
|---|
| >TIGR03724 arch_bud32 Kae1-associated kinase Bud32 | Back alignment and domain information |
|---|
| >PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2 | Back alignment and domain information |
|---|
| >PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A | Back alignment and domain information |
|---|
| >smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain | Back alignment and domain information |
|---|
| >PF02958 EcKinase: Ecdysteroid kinase; InterPro: IPR004119 This family includes proteins of unknown function | Back alignment and domain information |
|---|
| >PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel) | Back alignment and domain information |
|---|
| >cd00180 PKc Catalytic domain of Protein Kinases | Back alignment and domain information |
|---|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
| >KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family | Back alignment and domain information |
|---|
| >KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5 | Back alignment and domain information |
|---|
| >PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated | Back alignment and domain information |
|---|
| >PRK04190 glucose-6-phosphate isomerase; Provisional | Back alignment and domain information |
|---|
| >PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases | Back alignment and domain information |
|---|
| >TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase | Back alignment and domain information |
|---|
| >PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional | Back alignment and domain information |
|---|
| >KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional | Back alignment and domain information |
|---|
| >KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG3926 consensus F-box proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes | Back alignment and domain information |
|---|
| >PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed | Back alignment and domain information |
|---|
| >cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
| >cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
| >PRK09902 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
| >cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
| >COG3178 Predicted phosphotransferase related to Ser/Thr protein kinases [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR01767 MTRK 5-methylthioribose kinase | Back alignment and domain information |
|---|
| >cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
| >cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins | Back alignment and domain information |
|---|
| >cd05122 PKc_STE Catalytic domain of STE family Protein Kinases | Back alignment and domain information |
|---|
| >cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2 | Back alignment and domain information |
|---|
| >cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1 | Back alignment and domain information |
|---|
| >cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases | Back alignment and domain information |
|---|
| >smart00835 Cupin_1 Cupin | Back alignment and domain information |
|---|
| >cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase | Back alignment and domain information |
|---|
| >cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
| >cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor | Back alignment and domain information |
|---|
| >cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3 | Back alignment and domain information |
|---|
| >KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR02466 conserved hypothetical protein | Back alignment and domain information |
|---|
| >cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4 | Back alignment and domain information |
|---|
| >KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
| >KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family | Back alignment and domain information |
|---|
| >cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases | Back alignment and domain information |
|---|
| >cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
| >cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains | Back alignment and domain information |
|---|
| >cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros | Back alignment and domain information |
|---|
| >cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1 | Back alignment and domain information |
|---|
| >PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A | Back alignment and domain information |
|---|
| >PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1 | Back alignment and domain information |
|---|
| >cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase | Back alignment and domain information |
|---|
| >cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
| >cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
| >cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
| >cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2 | Back alignment and domain information |
|---|
| >cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors | Back alignment and domain information |
|---|
| >cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
| >cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
| >cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer | Back alignment and domain information |
|---|
| >PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel) | Back alignment and domain information |
|---|
| >COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown] | Back alignment and domain information |
|---|
| >cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6 | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 912 | ||||
| 3ld8_A | 334 | Structure Of Jmjd6 And Fab Fragments Length = 334 | 4e-47 | ||
| 3k2o_A | 336 | Structure Of An Oxygenase Length = 336 | 4e-45 | ||
| 3uyj_A | 248 | Crystal Structure Of Jmjd5 Catalytic Core Domain In | 2e-07 | ||
| 4aap_A | 239 | Crystal Structure Of Jmjd5 Domain Of Human Lysine-S | 2e-07 | ||
| 4gjz_A | 235 | Jmjd5 In Complex With 2-Oxoglutarate Length = 235 | 2e-07 | ||
| 4gjy_A | 235 | Jmjd5 In Complex With N-Oxalylglycine Length = 235 | 1e-06 | ||
| 3kv5_D | 488 | Structure Of Kiaa1718, Human Jumonji Demethylase, I | 7e-04 |
| >pdb|3LD8|A Chain A, Structure Of Jmjd6 And Fab Fragments Length = 334 | Back alignment and structure |
|
| >pdb|3K2O|A Chain A, Structure Of An Oxygenase Length = 336 | Back alignment and structure |
| >pdb|3UYJ|A Chain A, Crystal Structure Of Jmjd5 Catalytic Core Domain In Complex With Nickle And Alpha-Kg Length = 248 | Back alignment and structure |
| >pdb|4AAP|A Chain A, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine (Nog) Length = 239 | Back alignment and structure |
| >pdb|4GJZ|A Chain A, Jmjd5 In Complex With 2-Oxoglutarate Length = 235 | Back alignment and structure |
| >pdb|4GJY|A Chain A, Jmjd5 In Complex With N-Oxalylglycine Length = 235 | Back alignment and structure |
| >pdb|3KV5|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In Complex With N-Oxalylglycine Length = 488 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A* Length = 336 | Back alignment and structure |
|---|
Score = 229 bits (586), Expect = 2e-68
Identities = 101/282 (35%), Positives = 144/282 (51%), Gaps = 14/282 (4%)
Query: 113 RRYYRCHTVLDGFSFDSQLVKRKKIVTREEFDRECAE--EPILLSGLADTWPARNTWTID 170
YY ++ D+ ++ EEF +P++L + W A+ WT++
Sbjct: 30 HNYYESFSLSPAAVADNVERADALQLSVEEFVERYERPYKPVVLLNAQEGWSAQEKWTLE 89
Query: 171 QLLTRYGDTAFRISQRSV-RSISMKFKDYVAYMNVQHDEDPLYIFDYKFGENAQG--LLE 227
+L +Y + F+ + + S+ MK K Y+ YM D+ PLYIFD +GE+ + LLE
Sbjct: 90 RLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEYMESTRDDSPLYIFDSSYGEHPKRRKLLE 149
Query: 228 DYRVPDLFQEDLFNVLDGDMRPSYRWVIIGPQRSGASWHVDPALTSAWNTLLCGRKRWAL 287
DY+VP F +DLF RP YRW ++GP RSG H+DP TSAWN L+ G KRW L
Sbjct: 150 DYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCL 209
Query: 288 YPPGRVPLGVTVHVNEDDGDVNIETPSSLEWWLDF-----YPLLADDDKPIECTQLPGET 342
+P + V +E + ++ W+ P + KP+E Q PGET
Sbjct: 210 FPTSTPRELIKVTRDEGGN----QQDEAITWFNVIYPRTQLPTWPPEFKPLEILQKPGET 265
Query: 343 IVVPSGWWHCILNLETTIAVTQNFVDSKNFEFVCLDFAPGYR 384
+ VP GWWH +LNL+TTIA+TQNF S NF V G
Sbjct: 266 VFVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTVRGRP 307
|
| >3uyj_A Lysine-specific demethylase 8; jellyroll-like all beta fold, nuclear, oxidored; HET: AKG; 2.35A {Homo sapiens} PDB: 4aap_A* Length = 248 | Back alignment and structure |
|---|
| >3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A* Length = 392 | Back alignment and structure |
|---|
| >3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A* Length = 397 | Back alignment and structure |
|---|
| >3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A* Length = 371 | Back alignment and structure |
|---|
| >3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
| >3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A* Length = 338 | Back alignment and structure |
|---|
| >3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488 | Back alignment and structure |
|---|
| >2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A Length = 451 | Back alignment and structure |
|---|
| >3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528 | Back alignment and structure |
|---|
| >3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ... Length = 349 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11 Length = 342 | Back alignment and structure |
|---|
| >2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} Length = 332 | Back alignment and structure |
|---|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
| >3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A* Length = 373 | Back alignment and structure |
|---|
| >1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 | Back alignment and structure |
|---|
| >3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* Length = 531 | Back alignment and structure |
|---|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
| >4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* Length = 510 | Back alignment and structure |
|---|
| >4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens} Length = 489 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 912 | ||||
| d1vrba1 | 319 | b.82.2.11 (A:8-326) Putative asparaginyl hydroxyla | 7e-27 | |
| d1h2ka_ | 335 | b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibit | 2e-24 | |
| d2ovrb1 | 102 | a.158.1.1 (B:2263-2364) F-box/WD repeat-containing | 6e-07 | |
| d1p22a1 | 118 | a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b | 2e-05 | |
| d1fs1a1 | 41 | a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ | 2e-05 | |
| d1nexb1 | 100 | a.158.1.1 (B:270-369) Cdc4 F-box and linker domain | 6e-05 |
| >d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} Length = 319 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: Clavaminate synthase-like family: Asparaginyl hydroxylase-like domain: Putative asparaginyl hydroxylase YxbC species: Bacillus subtilis [TaxId: 1423]
Score = 110 bits (275), Expect = 7e-27
Identities = 37/263 (14%), Positives = 68/263 (25%), Gaps = 9/263 (3%)
Query: 138 VTREEFDRECAE-EPILLSGLADTWPARNTWTIDQLLTRYGDTAFR-ISQRSVRSISMKF 195
VT EF E +P++ G + + + + + L + I
Sbjct: 9 VTMSEFLEEYWPVKPLVARGEVERFTSIPGFEKVRTLENVLAIYNNPVMVVGDAVIEESE 68
Query: 196 KDYVAYMNVQHDEDPLYIFDYKFGENAQGLLEDYRVPDLFQEDLFNVLDGDMRPSYRWVI 255
++ + Y + L V ++ + S V
Sbjct: 69 GITDRFLVSPAEALEWYEKGAALEFDFTDLFIPQ-VRRWIEKLKAELRLPAGTSSKAIVY 127
Query: 256 IGPQRSGASWHVDPALTSAWNTLLCGRKRWALYPPGRVPLGVTVHVNEDDGDVNIETPSS 315
G H D + + G K W L V + D P
Sbjct: 128 AAKNGGGFKAHFDA--YTNLIFQIQGEKTWKLAKNENVSN----PMQHYDLSEAPYYPDD 181
Query: 316 LEWWLDFYPLLADDDKPIECTQLPGETIVVPSGWWHCILNLETTIAVTQNFVDSKNFEFV 375
L+ + P D PG + +P G WH + + T+A+ F + +
Sbjct: 182 LQSYWKGDPPKEDLPDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFGQPAWLDLM 241
Query: 376 CLDFAPGYRHKGVCRAGLLALEE 398
R + +
Sbjct: 242 LAALRKKLISDNRFRELAVNHQS 264
|
| >d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]} Length = 335 | Back information, alignment and structure |
|---|
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
| >d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 | Back information, alignment and structure |
|---|
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
| >d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 912 | |||
| d1h2ka_ | 335 | Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum | 100.0 | |
| d1vrba1 | 319 | Putative asparaginyl hydroxylase YxbC {Bacillus su | 100.0 | |
| d1j7la_ | 263 | Type IIIa 3',5"-aminoglycoside phosphotransferase | 99.43 | |
| d1nd4a_ | 255 | Aminoglycoside 3'-phosphotransferase IIa (Kanamyci | 99.28 | |
| d1zyla1 | 325 | RdoA {Escherichia coli [TaxId: 562]} | 99.03 | |
| d2ovrb1 | 102 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.01 | |
| d1p22a1 | 118 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 98.68 | |
| d1nexb1 | 100 | Cdc4 F-box and linker domains {Baker's yeast (Sacc | 98.66 | |
| d2ppqa1 | 316 | Homoserine kinase ThrB {Agrobacterium tumefaciens | 98.59 | |
| d2pula1 | 392 | Methylthioribose kinase MtnK {Bacillus subtilis [T | 98.38 | |
| d1fs1a1 | 41 | Skp2 {Human (Homo sapiens) [TaxId: 9606]} | 98.38 | |
| d1nw1a_ | 395 | Choline kinase {Caenorhabditis elegans [TaxId: 623 | 97.92 | |
| d1lr5a_ | 160 | Auxin binding protein {Maize (Zea mays) [TaxId: 45 | 97.19 | |
| d1j58a_ | 372 | Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil | 97.18 | |
| d1fxza2 | 174 | Seed storage 7S protein {Soybean (Glycine max), pr | 97.03 | |
| d1x82a_ | 190 | Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc | 96.94 | |
| g1dgw.1 | 168 | Seed storage 7S protein {Jack bean (Canavalia ensi | 96.88 | |
| d2phla2 | 162 | Seed storage 7S protein {French bean (Phaseolus vu | 96.64 | |
| d1od5a2 | 173 | Seed storage 7S protein {Soybean (Glycine max), gl | 96.62 | |
| d2et1a1 | 201 | Germin {Barley (Hordeum vulgare) [TaxId: 4513]} | 96.61 | |
| d1j58a_ | 372 | Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil | 96.59 | |
| d1uika2 | 185 | Seed storage 7S protein {Soybean (Glycine max), be | 96.54 | |
| d1juha_ | 348 | Quercetin 2,3-dioxygenase {Aspergillus japonicus [ | 95.55 | |
| d1y3ta1 | 330 | Hypothetical protein YxaG {Bacillus subtilis [TaxI | 94.92 | |
| d2phda1 | 351 | Gentisate 1,2-dioxygenase {Pseudaminobacter salicy | 94.66 | |
| d2d40a1 | 308 | Gentisate 1,2-dioxygenase {Escherichia coli [TaxId | 94.65 | |
| d1dgwa_ | 178 | Seed storage 7S protein {Jack bean (Canavalia ensi | 94.54 | |
| d1uija1 | 170 | Seed storage 7S protein {Soybean (Glycine max), be | 94.48 | |
| d2b8ma1 | 108 | Hypothetical protein MJ0764 {Archaeon Methanococcu | 94.37 | |
| d1o4ta_ | 115 | Hypothetical protein TM1287 {Thermotoga maritima [ | 94.18 | |
| d1uika1 | 203 | Seed storage 7S protein {Soybean (Glycine max), be | 94.17 | |
| d1v70a_ | 105 | Hypothetical protein TTHA0104 {Thermus thermophilu | 94.06 | |
| d1zvfa1 | 175 | 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yea | 93.97 | |
| d1nvra_ | 271 | Cell cycle checkpoint kinase chk1 {Human (Homo sap | 93.47 | |
| d2pa7a1 | 135 | dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Ane | 93.43 | |
| d1y3ta1 | 330 | Hypothetical protein YxaG {Bacillus subtilis [TaxI | 93.38 | |
| d3bu7a1 | 355 | Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [ | 93.24 | |
| d1a06a_ | 307 | Calmodulin-dependent protein kinase {Rat (Rattus n | 92.66 | |
| d2f4pa1 | 134 | Hypothetical protein TM1010 {Thermotoga maritima [ | 92.45 | |
| d2b1pa1 | 355 | c-jun N-terminal kinase (jnk3s) {Human (Homo sapie | 92.0 | |
| d1o6ya_ | 277 | Mycobacterial protein kinase PknB, catalytic domai | 91.88 | |
| d3bu7a1 | 355 | Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [ | 91.54 | |
| d2phda1 | 351 | Gentisate 1,2-dioxygenase {Pseudaminobacter salicy | 89.86 | |
| d2bnma2 | 122 | Hydroxypropylphosphonic acid epoxidase Fom4, C-ter | 89.63 | |
| d2d40a1 | 308 | Gentisate 1,2-dioxygenase {Escherichia coli [TaxId | 89.28 | |
| d1yhwa1 | 293 | pak1 {Human (Homo sapiens) [TaxId: 9606]} | 88.79 | |
| d1u59a_ | 285 | Tyrosine-protein kinase ZAP-70 {Human (Homo sapien | 88.36 | |
| d2pyta1 | 128 | Ethanolamine utilization protein EutQ {Salmonella | 88.05 | |
| d2java1 | 269 | Serine/threonine-protein kinase Nek2 {Human (Homo | 88.03 | |
| d3elna1 | 186 | Cysteine dioxygenase type I {Rattus norvegicus [Ta | 87.97 | |
| d1yfua1 | 174 | 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia m | 87.75 | |
| d2gm6a1 | 192 | Cysteine dioxygenase type I {Ralstonia eutropha [T | 87.61 | |
| d1yhfa1 | 112 | Hypothetical protein SPy1581 {Streptococcus pyogen | 86.99 | |
| d2j4za1 | 263 | Aurora-related kinase 1 (aurora-2) {Human (Homo sa | 86.62 | |
| d1sefa_ | 250 | Hypothetical protein EF2996 {Enterococcus faecalis | 85.06 | |
| d1rc6a_ | 253 | Hypothetical protein YlbA {Escherichia coli [TaxId | 84.72 | |
| d2ixca1 | 198 | dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobac | 84.62 | |
| d1wlta1 | 176 | dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo | 84.54 | |
| d1fxza1 | 239 | Seed storage 7S protein {Soybean (Glycine max), pr | 83.41 | |
| d1vj2a_ | 114 | Hypothetical protein TM1459 {Thermotoga maritima [ | 83.02 | |
| d3bb6a1 | 109 | Uncharacterized protein YeaR {Escherichia coli [Ta | 82.25 | |
| d2phla1 | 200 | Seed storage 7S protein {French bean (Phaseolus vu | 80.83 | |
| d1sfna_ | 245 | Hypothetical protein DR1152 {Deinococcus radiodura | 80.78 | |
| d1uu3a_ | 288 | 3-phosphoinositide dependent protein kinase-1 Pdk1 | 80.28 |
| >d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: Clavaminate synthase-like family: Hypoxia-inducible factor HIF ihhibitor (FIH1) domain: Hypoxia-inducible factor HIF ihhibitor (FIH1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-43 Score=297.85 Aligned_cols=238 Identities=21% Similarity=0.348 Sum_probs=180.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHH--CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCEEEEEEECC---------
Q ss_conf 34567775688771003799988999995--1489100036677844567768899988299249998558---------
Q 002526 119 HTVLDGFSFDSQLVKRKKIVTREEFDREC--AEEPILLSGLADTWPARNTWTIDQLLTRYGDTAFRISQRS--------- 187 (912)
Q Consensus 119 ~~~L~~~~~~~~~IeRv~~LS~eeF~~~y--~nkPVIItG~~~~WPA~~kWT~dyL~ek~GD~~V~V~~~s--------- 187 (912)
..+|+.+..+...|+|++..+. +.++| .++||||+|++.+|||+ +||.|||++++|+..|+|....
T Consensus 15 ~~~l~~~~~~~~~vpr~~~~~~--~~e~y~~~~~PvVi~g~~~~Wpa~-kWt~dyL~~~~Gd~~V~v~~~~~~~~~~~~~ 91 (335)
T d1h2ka_ 15 ESQLRSYSFPTRPIPRLSQSDP--RAEELIENEEPVVLTDTNLVYPAL-KWDLEYLQENIGNGDFSVYSASTHKFLYYDE 91 (335)
T ss_dssp GGGSCCCSSCEEECCEECTTCH--HHHHHHHTTCCEEESCCCTTGGGG-GCCHHHHHHHSCSCCEEEEEESSSBCCCCCG
T ss_pred HHHCCCCCCCCCCCCCCCCCCC--CHHHHHCCCCCEEEECCCCCCCCC-CCCHHHHHHHHCCCEEEEEEECCCCCCCCCC
T ss_conf 6555578998862576587883--989995589888996988789743-5899999996099438999826865543443
Q ss_pred ------------CCEEEEEHHHHHHHHHH---CCCCCCEEEECCCCCCCHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCC
Q ss_conf ------------82188418999999860---699997679616554562566410589986631200014899988854
Q 002526 188 ------------VRSISMKFKDYVAYMNV---QHDEDPLYIFDYKFGENAQGLLEDYRVPDLFQEDLFNVLDGDMRPSYR 252 (912)
Q Consensus 188 ------------~~~~~mtL~dFidyl~~---~~de~pLYLfD~~l~e~~P~L~~Dy~vP~~F~eDlf~~L~~~~RPd~r 252 (912)
.....|++++|++++.. ......+|+++.......+.+..|+..|.++..+.........+....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~ef~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 171 (335)
T d1h2ka_ 92 KKMANFQNFKPRSNREEMKFHEFVEKLQDIQQRGGEERLYLQQTLNDTVGRKIVMDFLGFNWNWINKQQGKRGWGQLTSN 171 (335)
T ss_dssp GGGGGGTTCCCSEEEEEECHHHHHHHHHHHHHTTCCCEEEEEEECCTTSCHHHHHHHHTSCHHHHHHHHHHHTCCCEEEC
T ss_pred CCCCCCCCCCCCCCHHCCCHHHHHHHHHHCCCCCCCCCEEHHHCCCCCCCHHHHCCCCCCCCCCCCHHHCCCCCCCCCCE
T ss_conf 23555433443210100649999999871003587751674432355337556425666740003433323323677602
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCEEE---ECCCCCCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 377337999984322789886418999869999993799999961232---15999986577996022232108998799
Q 002526 253 WVIIGPQRSGASWHVDPALTSAWNTLLCGRKRWALYPPGRVPLGVTVH---VNEDDGDVNIETPSSLEWWLDFYPLLADD 329 (912)
Q Consensus 253 wL~IGp~gSgTplH~Dp~~TsawnaqI~GrKRWiLfPP~~~p~gv~~~---~~~~~s~vdv~sPdsl~W~l~~yP~l~~a 329 (912)
++|||++|++|++|+|++ ++|++||.|+|+|+||||.+.+.++... .....+.+++..|+ +..+|.+..+
T Consensus 172 ~lwiG~~gs~t~~H~D~~--~~~~~q~~G~K~~~l~~p~~~~~~~~~~~~~~~~~~s~~d~~~~d-----~~~~p~~~~~ 244 (335)
T d1h2ka_ 172 LLLIGMEGNVTPAHYDEQ--QNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPD-----YERFPNFQNV 244 (335)
T ss_dssp EEEEECTTCEEEEECCSE--EEEEEEEESCEEEEEECGGGHHHHCBCCTTSTTTTBBCCCTTSCC-----TTTCGGGGGC
T ss_pred EEEECCCCCCCCCCCCCC--CCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCC-----HHHCCCHHCC
T ss_conf 899748988775010355--406788515447999665445444666666777751012566755-----3433211059
Q ss_pred CCCEEEEECCCCEEEECCCCCEEEEECCC-CEEEEECCC
Q ss_conf 98889999488989869998144584788-299940236
Q 002526 330 DKPIECTQLPGETIVVPSGWWHCILNLET-TIAVTQNFV 367 (912)
Q Consensus 330 ~~p~EvvLePGDvLFIPsGWWHqV~NLed-SIAVt~NFv 367 (912)
++++|+|+|||+||||+||||+|+|+++ +++|+.||+
T Consensus 245 -~~~~~~l~pGd~L~iP~~w~H~V~~~~~~~~sisvn~w 282 (335)
T d1h2ka_ 245 -VGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFW 282 (335)
T ss_dssp -CEEEEEECTTCEEEECTTCEEEEEECTTSCCEEEEEEE
T ss_pred -CCEEEEECCCCEEEECCCCEEEEEECCCCCEEEEEEEE
T ss_conf -71499988998786279970899975899769999752
|
| >d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
| >d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]} | Back information, alignment and structure |
|---|
| >d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
| >d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
| >d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} | Back information, alignment and structure |
|---|
| >d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} | Back information, alignment and structure |
|---|
| >d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} | Back information, alignment and structure |
|---|
| >d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]} | Back information, alignment and structure |
|---|
| >d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} | Back information, alignment and structure |
|---|
| >d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} | Back information, alignment and structure |
|---|
| >d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]} | Back information, alignment and structure |
|---|
| >d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]} | Back information, alignment and structure |
|---|
| >d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]} | Back information, alignment and structure |
|---|
| >d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} | Back information, alignment and structure |
|---|
| >d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]} | Back information, alignment and structure |
|---|
| >d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]} | Back information, alignment and structure |
|---|
| >d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]} | Back information, alignment and structure |
|---|
| >d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]} | Back information, alignment and structure |
|---|
| >d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]} | Back information, alignment and structure |
|---|
| >d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
| >d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]} | Back information, alignment and structure |
|---|
| >d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]} | Back information, alignment and structure |
|---|
| >d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
| >d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
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| >d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2ixca1 b.82.1.1 (A:1-198) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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| >d1wlta1 b.82.1.1 (A:1-176) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
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| >d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} | Back information, alignment and structure |
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| >d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d3bb6a1 b.82.2.13 (A:1-109) Uncharacterized protein YeaR {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} | Back information, alignment and structure |
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| >d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
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| >d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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