Citrus Sinensis ID: 002527

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910--

MCTYTNCNILQRKQCASCSELPEAHFYYYARHNKQLTIRVKRLPDRIRLSGEAEGKLWMWSRCGRCKTANGVPKSTKRVVISTAACGLSFGKFLELSFSHHSSSTRLSSCGHSLHRDFLYFFGLGPMVGMFKYSPFTTYNMCVPPQKLEFSNSINKWLKEEFQNVYTKGILLFSEVESSLKQIGSRFVGSTLNLQGSLKEFSVTSEILKQERSVFEVDIQKTVAKKVHSDEALHKLLSLNRLRWELLIESCIWDRRLHSLLLPDPTVVITGATEKPGPEQTKVKMDGTTAKGNEVPEPEVDSGNGDNVSNNFGNLEVLPDVAAEADELVVKEIPIDGPDRESGERDHKKTTVLKDVETSIASDLSSTSLANEDSMVRSNVSDYLSGDDNVQAGKFLMSENLQVDKVVPNSQYLANSGSVVDPNASKNETSTHSLLSDLEKLNGWFWMPFSELQQIYMKDLQRGFVPKFECVSRYTPEHLPTVYQLISEEGTRMHIPLGAENYMVSDYEGELSSIIACALAVLKEMPLSTVVFNEDSGRDGDMAVKTIDSLRSLTRIPTMASSLWSVNGSSDSDSIYASLSISSEDSRFSSFDGLNLLESLIPPEVLSPEVSIGISKSLGKGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWDAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFERNITRQYDLKGALHARYNTTVDGSGDVLLDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQRRELVCGIIDYLRQYTWDKHLETWVKSSLVPKNVLPTVISPKDYKRRFRKFMSTHFLSVPDHWCSPESDDPCELCGIKDDSSSRTKS

cccccccccccccccccccccccccEEEEEEccEEEEEEEEEccccccccccccccEEEEEccccccccccccccccEEEcccccccccHHHHHHHHcccccccccccccccccccccccccccccEEEEEEEEEEEEEEEEccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccHHHHHHHHHHcccccccccccccccccccccHHHHHccccccccccccccccEEEccccccHHHHHHHHcccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcHHHHHHHHHHHcccHHHHHHHHccccccccccccccccEEEEccccEEEEEccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHEEEEEEEEEEccccccEEEEEEEEEEccccccccccEEEEcccccccccccccccccccccHHHHHHcccccEEEcHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccc

ccHHHHHHHccccccccccccHHHHHEEEEccccEEEEEEEEccccccccccccccEEEEEEEccccccccccccccEEEEcHHHHcccHHHHEEEEEccHHHHHHHccccccccHHHHHEEccccEEEEEEEccEEEEEEEccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccHHHcccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccHHHHHHHccccccccHHHHHHHccccccccccHHHHHcccccccccccccccEEEEEEcccccHHHHHHcccccHcccccHHHHcccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEEEEEcHHHHHHHHHHccccHHHHHHHHHHcccccccccccccEEEEcccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHcccccEHEHEEEEEEEEEEccccccEEEEEEEEEHHHcccccEEEEEEccccccccccccccccccEEEcHHHHHHcccccEEEcHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEcccccEEEEEEEHHHHHccHHHHHHHHHHHcccccccccEEEcHHHHHHHHHHHHHHHcccccccccccccccHHHHccccccccccccc

mctytncnilqrkqcascselpeahFYYYARHNKQLTIRVKrlpdrirlsgeaegklwmwsrcgrcktangvpkstKRVVISTAACGLSFGKFLElsfshhssstrlsscghslhrdflyffglgpmvgmfkyspfttynmcvppqkleFSNSINKWLKEEFQNVYTKGILLFSEVESSLKQIGSRfvgstlnlqgslkefSVTSEILKQERSVFEVDIQKTVAKKVHSDEALHKLLSLNRLRWELLIESCIWDrrlhslllpdptvvitgatekpgpeqtkvkmdgttakgnevpepevdsgngdnvsnnfgnlevlpdvaaEADELVvkeipidgpdresgerdhkktTVLKDVETSIasdlsstslanedsmVRSNVsdylsgddnvqaGKFLmsenlqvdkvvpnsqylansgsvvdpnasknetstHSLLSDLEklngwfwmpfSELQQIYMKDlqrgfvpkfecvsrytpehlpTVYQLISEegtrmhiplgaenymvsDYEGELSSIIACALAVLkemplstvvfnedsgrdgdmAVKTIDSLrsltriptmASSLwsvngssdsdsiYASLsissedsrfssfdglnlleslippevlspevsigiskslgkgkysVKCLYANqfrdlrsrccpselayIDSLSrcrnwdakggksksfFVKTLDDRFIIKEIkktefdsfDKFALHYFKYMnesfdsgnQTCLAKVLGIYqvtirqpksgkemRHDLMVMENLTFERNITRQYDLKGALHARynttvdgsgdvlldqnfvndmnssplyvsnTAKRILQRAvwndttflnsidvmdysllvgvdsqRRELVCGIIDYLRQYTWDKHLETWVksslvpknvlptvispkdyKRRFRKFMSthflsvpdhwcspesddpcelcgikddsssrtks

mctytncnilqrkqCASCSELPEAHFYYYARHNKQLTIRVKRLPDRIRLsgeaegklwmwsrcGRCKtangvpkstkrVVISTAACGLSFGKFLELSFSHHSSSTRLSSCGHSLHRDFLYFFGLGPMVGMFKYSPFTTYNMCVPPQKLEFSNSINKWLKEEFQNVYTKGILLFSEVESSLKQIGSRFVGSTLNLQGSLKEFSVTSEILKQERSVFEVDIQKTVakkvhsdealHKLLSLNRLRWELLIESCIWDRRLHSLLLPDPTVvitgatekpgpeqtkvkmdgttakgnevpepevdsgngdNVSNNFGNLEVLPDVAAEADELVVkeipidgpdresgerdhkkttvlkdvetsiasdlsstslanedsmVRSNVSDYLSGDDNVQAGKFLMSENLQVDKVVPNSQYLANsgsvvdpnaskNETSTHSLLSDLEKLNGWFWMPFSELQQIYMKDLQRGFVPKFECVSRYTPEHLPTVYQLISEEGTRMHIPLGAENYMVSDYEGELSSIIACALAVLKEMPLSTVvfnedsgrdgdMAVKTIDSLRSLTRIPTMASSLWSVNGSSDSDSIYASLSISSEDSRFSSFDGLNLLESLIPPEVLSPEVSIGIskslgkgkysVKCLYANQFRDLRSRCCPSELAYIdslsrcrnwdakggksksffvktlddrFIIKeikktefdsfDKFALHYFKYMNESFDSGNQTCLAKVLGIYQVTirqpksgkemrhDLMVMENLTFERNITRQYDLKGALHARYNTTVDGSGDVLLDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQRRELVCGIIDYLRQYTWDKHLETwvksslvpknvlptvispkdyKRRFRKFMSTHFLSVPDHWCSPESDDPCELCgikddsssrtks

MCTYTNCNILQRKQCASCSELPEAHFYYYARHNKQLTIRVKRLPDRIRLSGEAEGKLWMWSRCGRCKTANGVPKSTKRVVISTAACGLSFGKFLElsfshhssstrlsscghslHRDFLYFFGLGPMVGMFKYSPFTTYNMCVPPQKLEFSNSINKWLKEEFQNVYTKGILLFSEVESSLKQIGSRFVGSTLNLQGSLKEFSVTSEILKQERSVFEVDIQKTVAKKVHSDEALHKllslnrlrwellIESCIWDRRLHSLLLPDPTVVITGATEKPGPEQTKVKMDGTTAKGNEVPEPEVDSGNGDNVSNNFGNLEVLPDVAAEADELVVKEIPIDGPDRESGERDHKKTTVLKDVETSIASDLSSTSLANEDSMVRSNVSDYLSGDDNVQAGKFLMSENLQVDKVVPNSQYLANSGSVVDPNASKNETSTHSLLSDLEKLNGWFWMPFSELQQIYMKDLQRGFVPKFECVSRYTPEHLPTVYQLISEEGTRMHIPLGAENYMVSDYEGELSSIIACALAVLKEMPLSTVVFNEDSGRDGDMAVKTIDSLRSLTRIPTMASSLWSVNGssdsdsiyaslsissedsrfssFDGLNLLESLIPPEVLSPEVSIGISKSLGKGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWDAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFERNITRQYDLKGALHARYNTTVDGSGDVLLDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQRRELVCGIIDYLRQYTWDKHLETWVKSSLVPKNVLPTVISPKDYKRRFRKFMSTHFLSVPDHWCSPESDDPCELCGIKDDSSSRTKS

**TYTNCNILQRKQCASCSELPEAHFYYYARHNKQLTIRVKRLPDRIRLSGEAEGKLWMWSRCGRCKTANGVPKSTKRVVISTAACGLSFGKFLELSFSHHSSSTRLSSCGHSLHRDFLYFFGLGPMVGMFKYSPFTTYNMCVPPQKLEFSNSINKWLKEEFQNVYTKGILLFSEVESSLKQIGSRFVGSTLNLQGSLKEFSVTSEILKQERSVFEVDIQKTVAKKVHSDEALHKLLSLNRLRWELLIESCIWDRRLHSLLLPDPTVVITG*******************************************LEVLPDVAAEADELVV********************************************************************************************************LSDLEKLNGWFWMPFSELQQIYMKDLQRGFVPKFECVSRYTPEHLPTVYQLISEEGTRMHIPLGAENYMVSDYEGELSSIIACALAVLKEMPLSTVVFNE********AVKTIDSLRSLTRIP*****LW**************************FDGLNLLESLIPPEVLSPEVSIGISKSLGKGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWDAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQ******MRHDLMVMENLTFERNITRQYDLKGALHARYNTTVDGSGDVLLDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQRRELVCGIIDYLRQYTWDKHLETWVKSSLVPKNVLPTVISPKDYKRRFRKFMSTHFLSVPDHWCS**********************

*CTYTNCNILQRKQCASCSELPEAHFYYYARHNKQLTIRVK***************LWMWSRCGRCKTANGVPKSTKRVVISTAACGLSFGKFLELSFSHHSSSTRLSSCGHSLHRDFLYFFGLGPMVGMFKYSPFTTYNMCVPPQKLEFSNSINKWLKEEFQNVYTKGILLFSEVESSLKQIGSR**************FSVTSEILKQERSVFEVDIQKTVA***HSDEALHKLLSLNRLRWELLIESCIWDRRLHS*******************************************************************************************************************************************************************************************************************************************IPLGAENYMVSDYEGELSSIIACALAVL**********************************************************************************************SLGKGKYSVKCLYANQFRDLRSRCCPSELAYIDS*****************FVKTLDDRFIIKEIKKTEFDSFDKFALHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFERNITRQYDLKG******************DQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQRRELVCGIIDYLRQYTWDKHLETWV************VISPKDYKRRFRKFMSTHFLS*****************************

MCTYTNCNILQRKQCASCSELPEAHFYYYARHNKQLTIRVKRLPDRIRLSGEAEGKLWMWSRCGRCKTANGVPKSTKRVVISTAACGLSFGKFLELSFS**********CGHSLHRDFLYFFGLGPMVGMFKYSPFTTYNMCVPPQKLEFSNSINKWLKEEFQNVYTKGILLFSEVESSLKQIGSRFVGSTLNLQGSLKEFSVTSEILKQERSVFEVDIQKTVAKKVHSDEALHKLLSLNRLRWELLIESCIWDRRLHSLLLPDPTVVITGATEKPGPEQTKVKMDGTTAKG***********NGDNVSNNFGNLEVLPDVAAEADELVVKEIPIDGP***********TTVLKDVETSIASDLSSTSLANEDSMVRSNVSDYLSGDDNVQAGKFLMSENLQVDKVVPNSQYLANSGSVVDPNASKNETSTHSLLSDLEKLNGWFWMPFSELQQIYMKDLQRGFVPKFECVSRYTPEHLPTVYQLISEEGTRMHIPLGAENYMVSDYEGELSSIIACALAVLKEMPLSTVVFNEDSGRDGDMAVKTIDSLRSLTRIPTMASSLWSVNGSSDSDSIYASLSISSEDSRFSSFDGLNLLESLIPPEVLSPEVSIGISKSLGKGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWDAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFERNITRQYDLKGALHARYNTTVDGSGDVLLDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQRRELVCGIIDYLRQYTWDKHLETWVKSSLVPKNVLPTVISPKDYKRRFRKFMSTHFLSVPDHWCSPESDDPCELCGI**********

MCTYTNCNILQRKQCASCSELPEAHFYYYARHNKQLTIRVKRLPDRIRLSGEAEGKLWMWSRCGRCKTANGVPKSTKRVVISTAACGLSFGKFLELSFSHHSSSTRLSSCGHSLHRDFLYFFGLGPMVGMFKYSPFTTYNMCVPPQKLEFSNSINKWLKEEFQNVYTKGILLFSEVESSLKQIGSRFVGSTLNLQGSLKEFSVTSEILKQERSVFEVDIQKTVAKKVHSDEALHKLLSLNRLRWELLIESCIWDRRLHSLLLPDP*********************************************************************************************************************************************************************************GWFWMPFSELQQIYMKDLQRGFVPKFECVSRYTPEHLPTVYQLISEEGTRMHIPLGAENYMVSDYEGELSSIIACALAVLKEMPLS*****************************************************************************LSPEVSIGISKSLGKGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWDAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFERNITRQYDLKGALHARYNTTVDGSGDVLLDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQRRELVCGIIDYLRQYTWDKHLETWVKSSLVPKNVLPTVISPKDYKRRFRKFMSTHFLSVPDHWCS**********************

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		912	2.2.26 [Sep-21-2011]
O59722		1932	1-phosphatidylinositol 3-	yes	no	0.292	0.138	0.427	2e-61
P34756		2278	1-phosphatidylinositol 3-	yes	no	0.286	0.114	0.432	8e-61
B0G126		2656	1-phosphatidylinositol 3-	yes	no	0.279	0.096	0.461	6e-57
Q9Y2I7		2098	1-phosphatidylinositol 3-	yes	no	0.310	0.134	0.405	3e-56
Q9Z1T6		2097	1-phosphatidylinositol 3-	yes	no	0.310	0.134	0.405	6e-56
O96838		1809	Putative 1-phosphatidylin	yes	no	0.274	0.138	0.419	3e-48
Q9SUI2		754	Phosphatidylinositol 4-ph	no	no	0.161	0.194	0.288	1e-12
Q8L796		754	Phosphatidylinositol 4-ph	no	no	0.158	0.192	0.335	2e-12
Q80XI4		416	Phosphatidylinositol 5-ph	no	no	0.199	0.437	0.303	1e-11
P78356		416	Phosphatidylinositol 5-ph	no	no	0.199	0.437	0.303	1e-11

>sp\|O59722\|FAB1_SCHPO 1-phosphatidylinositol 3-phosphate 5-kinase fab1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fab1 PE=3 SV=2	Back alignment and function desciption

 Score =  238 bits (606), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 115/269 (42%), Positives = 170/269 (63%), Gaps = 2/269 (0%)

Query: 619  GKGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWDAKGGKSKSFFVKTLDDRFII 678
            G  + S K  +A QF  LR R C  E  ++ SL+RC  W++ GGKS S F+KT D ++I+
Sbjct: 1654 GSARLSCKVFFAEQFSALR-RACGCEETFVTSLARCSLWESSGGKSGSAFLKTFDKKYIL 1712

Query: 679  KEIKKTEFDSFDKFALHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMV 738
            K + + E DS   FA  YF Y+++ F     T L K+ G Y+V IR P +G   + D+M+
Sbjct: 1713 KVLSRLESDSLLNFAPAYFDYISKVFFHELPTALTKIFGFYRVDIRNPTTGTICKTDIMI 1772

Query: 739  MENLTFERNITRQYDLKGALHARYNTTVDGSGDVLLDQNFVNDMNSSPLYVSNTAKRILQ 798
            MEN+ ++   +R +DLKG++  R+  +     +VLLD+N V  +  SP++VS   K +L 
Sbjct: 1773 MENVFYDECPSRIFDLKGSMRNRHVESTGKVDEVLLDENLVELIYESPIFVSEQLKSLLH 1832

Query: 799  RAVWNDTTFLNSIDVMDYSLLVGVDSQRRELVCGIIDYLRQYTWDKHLETWVKS-SLVPK 857
              +WNDT FL+ +++MDYSL+VG+D  ++EL  GIID++R YTWDK LE+WVK   LV +
Sbjct: 1833 SCLWNDTLFLSKLNIMDYSLIVGIDYTKKELYVGIIDFIRTYTWDKKLESWVKEKGLVGR 1892

Query: 858  NVLPTVISPKDYKRRFRKFMSTHFLSVPD 886
               PT+++PK YK RFRK M  + L+  D
Sbjct: 1893 GPEPTIVTPKQYKNRFRKAMDCYILASQD 1921

The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2) (By similarity). Catalyzes the phosphorylation of phosphatidylinositol 3-phosphate on the fifth hydroxyl of the myo-inositol ring, to form phosphatidylinositol 3,5-bisphosphate. Required for endocytic-vacuolar pathway and nuclear migration. The product of the reaction it catalyzes functions as an important regulator of vacuole homeostasis perhaps by controlling membrane flux to and/or from the vacuole (By similarity). Required for survival under conditions of nitrogen starvation. May have a role in the secretion of pheromone peptides.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 1EC: 5EC: 0

>sp\|P34756\|FAB1_YEAST 1-phosphatidylinositol 3-phosphate 5-kinase FAB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FAB1 PE=1 SV=3	Back alignment and function description

>sp\|B0G126\|FYV1_DICDI 1-phosphatidylinositol 3-phosphate 5-kinase OS=Dictyostelium discoideum GN=pip5k3 PE=3 SV=1	Back alignment and function description

>sp\|Q9Y2I7\|FYV1_HUMAN 1-phosphatidylinositol 3-phosphate 5-kinase OS=Homo sapiens GN=PIKFYVE PE=1 SV=3	Back alignment and function description

>sp\|Q9Z1T6\|FYV1_MOUSE 1-phosphatidylinositol 3-phosphate 5-kinase OS=Mus musculus GN=Pikfyve PE=1 SV=3	Back alignment and function description

>sp\|O96838\|FYV1_DROME Putative 1-phosphatidylinositol 3-phosphate 5-kinase OS=Drosophila melanogaster GN=fab1 PE=1 SV=2	Back alignment and function description

>sp\|Q9SUI2\|PI5K7_ARATH Phosphatidylinositol 4-phosphate 5-kinase 7 OS=Arabidopsis thaliana GN=PIP5K7 PE=1 SV=1	Back alignment and function description

>sp\|Q8L796\|PI5K2_ARATH Phosphatidylinositol 4-phosphate 5-kinase 2 OS=Arabidopsis thaliana GN=PIP5K2 PE=1 SV=2	Back alignment and function description

>sp\|Q80XI4\|PI42B_MOUSE Phosphatidylinositol 5-phosphate 4-kinase type-2 beta OS=Mus musculus GN=Pip4k2b PE=1 SV=1	Back alignment and function description

>sp\|P78356\|PI42B_HUMAN Phosphatidylinositol 5-phosphate 4-kinase type-2 beta OS=Homo sapiens GN=PIP4K2B PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		912
255585234		1569	phosphatidylinositol-4-phosphate 5-kinas	0.951	0.553	0.655	0.0
224146449		1387	predicted protein [Populus trichocarpa]	0.888	0.583	0.634	0.0
359493066		1601	PREDICTED: uncharacterized protein LOC10	0.972	0.554	0.621	0.0
147788261		1517	hypothetical protein VITISV_042325 [Viti	0.938	0.564	0.594	0.0
356574577		1594	PREDICTED: uncharacterized protein LOC10	0.924	0.528	0.557	0.0
356534009		1541	PREDICTED: uncharacterized protein LOC10	0.933	0.552	0.542	0.0
449444198		1517	PREDICTED: uncharacterized protein LOC10	0.926	0.557	0.545	0.0
224135447		749	predicted protein [Populus trichocarpa]	0.751	0.914	0.644	0.0
15218566		1456	protein FAB1D [Arabidopsis thaliana] gi\|	0.881	0.552	0.512	0.0
297846424		1450	phosphatidylinositol-4-phosphate 5-kinas	0.878	0.552	0.512	0.0

>gi\|255585234\|ref\|XP_002533319.1\| phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis] gi\|223526863\|gb\|EEF29076.1\| phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1129 bits (2919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 602/919 (65%), Positives = 709/919 (77%), Gaps = 51/919 (5%)

Query: 1    MCTYTNCNIL-QRKQCASCSELPEAHFYYYARHNKQLTIRVKRLPDRIRLSGEAEGKLWM 59
            + T+   N+L QR+QC +CSELPEAHFYYYA HNKQLTI+VKRLP    L GEAEGKLWM
Sbjct: 690  LGTFLRDNLLNQRRQCTTCSELPEAHFYYYAHHNKQLTIQVKRLPKI--LPGEAEGKLWM 747

Query: 60   WSRCGRCKTANGVPKSTKRVVISTAACGLSFGKFLELSFSHHSSSTRLSSCGHSLHRDFL 119
            WS CG+CK  N V K TKRVVIS+AA  LSFGKFLELSFS HSS  RLSSCGH L RDFL
Sbjct: 748  WSCCGKCKYENRVRKCTKRVVISSAARRLSFGKFLELSFSCHSSFGRLSSCGHYLERDFL 807

Query: 120  YFFGLGPMVGMFKYSPFTTYNMCVPPQKLEFSNSIN-KWLKEEFQNVYTKGILLFSEVES 178
            YFFGLGPMV MFKYSP  TY + +PPQ LEF++SI    LK EF++VY+KG  LFS +  
Sbjct: 808  YFFGLGPMVAMFKYSPVMTYTVSLPPQMLEFNHSIRYDGLKREFEDVYSKGRSLFSGIAD 867

Query: 179  SLKQIGSRFVGSTLNLQGSLKEFSVTSEILKQERSVFEVDIQKTVAKKVHSDEALHKLLS 238
             LK++  ++ GSTLNL GSLKEFS   E+LK E S FEV I   V K  ++D+A  K LS
Sbjct: 868  ILKKLRLKYEGSTLNLGGSLKEFSDIEEMLKHESSEFEVTIIDAVTKSGNADKADFKFLS 927

Query: 239  LNRLRWELLIESCIWDRRLHSLLLPDPTVVITGATEKPGPEQTKVKMDGTT---AKGNEV 295
            LNRL WELL+ES IW+RRLHSLLLPDP++V TGA EKP  +Q K KM GTT    +GNE+
Sbjct: 928  LNRLLWELLLESSIWERRLHSLLLPDPSLVATGAIEKPVHDQLKSKMSGTTDGRTRGNEI 987

Query: 296  PEPEVDSGNGDNVSN-NFGNLEVLPDVAAEADELVVKEIPIDGPDRESGERDHKKTTVLK 354
                    +G+N SN  F N       + EA+EL VKEIP++GP +ES  +DH       
Sbjct: 988  V-------SGNNSSNLKFSN-------SLEANELSVKEIPVNGPVQESRVQDH------- 1026

Query: 355  DVETSIASDLSSTSLANEDSMVRSNVSDYLSGDDNVQAGKFLMSENLQVDKVVPNSQYLA 414
                     L  +S   E+ + RSN+      + N +A  FL+ + L V++ +P   ++ 
Sbjct: 1027 ---------LDHSSPLGEN-IERSNM------NSNSEADNFLLGD-LDVERTIPIGPFIG 1069

Query: 415  NSGSVVDPNASKNETSTHSLLSDLEKLNGWFWMPFSELQQIYMKDLQRGFVPKFECVSRY 474
            NS SV+D  AS+  TS  S++S LE   GWFWMP SE++QIY++DL+RGF+PKF+ ++ Y
Sbjct: 1070 NSDSVIDSEASRKGTSLRSVVSSLEYSTGWFWMPLSEIRQIYLEDLERGFMPKFQSINNY 1129

Query: 475  TPEHLPTVYQLISEEGTRMHIPLGAENYMVSDYEGELSSIIACALAVLKEMPLSTVVFNE 534
              EH+P  YQLISEEG R+HIPLG +N +V DY+GELSSIIACALAVLK++P    VF++
Sbjct: 1130 MQEHIPAAYQLISEEGQRIHIPLGTDNCIVRDYDGELSSIIACALAVLKDIP----VFDD 1185

Query: 535  DSGRDGDMAVKTIDSLRSLTRIPTMASSLWSVNGSSDSDSIYASLSISSEDSRFSSFDGL 594
            D  + G M+ K+ + L  LTR+PT  SS WS NGSSDSDS++++LSIS EDS FSSFDG+
Sbjct: 1186 DGPKKGGMSAKSTEGLHLLTRVPTRISSHWSSNGSSDSDSLHSTLSISPEDSHFSSFDGI 1245

Query: 595  NLLESLIPPEVLSPEVSIGISKSLGKGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRC 654
            +LLESL  PE  S EVS G++KSLGKGKYSV  LY NQFRDLRSRCCPSE+ YI SLSRC
Sbjct: 1246 SLLESLASPENESSEVSFGVAKSLGKGKYSVISLYENQFRDLRSRCCPSEVHYIASLSRC 1305

Query: 655  RNWDAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFKYMNESFDSGNQTCLAK 714
            RNWDAKGGKSK  F KTLDDRFIIKEIKKTEF+SF KFA HYFKYMNESF+ GNQTCLAK
Sbjct: 1306 RNWDAKGGKSKCVFAKTLDDRFIIKEIKKTEFESFVKFAPHYFKYMNESFELGNQTCLAK 1365

Query: 715  VLGIYQVTIRQPKSGKEMRHDLMVMENLTFERNITRQYDLKGALHARYNTTVDGSGDVLL 774
            VLGIYQV IRQ KSGKE+RHDLMVMENL+F RNITRQYDLKGALHARYN+  DGSGDVLL
Sbjct: 1366 VLGIYQVVIRQTKSGKEVRHDLMVMENLSFGRNITRQYDLKGALHARYNSAADGSGDVLL 1425

Query: 775  DQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQRRELVCGII 834
            DQNFVNDMNSSPLYV+N AKR+L+RAVWNDTTFLNSI+VMDYSLLVGVD+QRRELVCGII
Sbjct: 1426 DQNFVNDMNSSPLYVNNKAKRLLERAVWNDTTFLNSINVMDYSLLVGVDTQRRELVCGII 1485

Query: 835  DYLRQYTWDKHLETWVKSSL-VPKNVLPTVISPKDYKRRFRKFMSTHFLSVPDHWCSPES 893
            DYLRQYTWDK LETWVKSSL VPKNVLPTVISPK+YK+RFRKFM+ HFLSVPD+WCS  S
Sbjct: 1486 DYLRQYTWDKQLETWVKSSLVVPKNVLPTVISPKEYKKRFRKFMAAHFLSVPDNWCSQRS 1545

Query: 894  DDPCELCGIKDDSSSRTKS 912
             DPCELCGI++D+SS++KS
Sbjct: 1546 SDPCELCGIRNDASSQSKS 1564

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224146449\|ref\|XP_002326011.1\| predicted protein [Populus trichocarpa] gi\|222862886\|gb\|EEF00393.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359493066\|ref\|XP_002270311.2\| PREDICTED: uncharacterized protein LOC100242669 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147788261\|emb\|CAN65296.1\| hypothetical protein VITISV_042325 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356574577\|ref\|XP_003555422.1\| PREDICTED: uncharacterized protein LOC100809696 [Glycine max]	Back alignment and taxonomy information

>gi\|356534009\|ref\|XP_003535550.1\| PREDICTED: uncharacterized protein LOC100815340 [Glycine max]	Back alignment and taxonomy information

>gi\|449444198\|ref\|XP_004139862.1\| PREDICTED: uncharacterized protein LOC101202759 [Cucumis sativus] gi\|449525806\|ref\|XP_004169907.1\| PREDICTED: uncharacterized LOC101202759 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224135447\|ref\|XP_002327220.1\| predicted protein [Populus trichocarpa] gi\|222835590\|gb\|EEE74025.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|15218566\|ref\|NP_174686.1\| protein FAB1D [Arabidopsis thaliana] gi\|5091620\|gb\|AAD39608.1\|AC007454_7 Contains similarity to gi\|836774 FAB1 protein from Saccharomyces cerevisiae genome gb\|D50617 [Arabidopsis thaliana] gi\|332193569\|gb\|AEE31690.1\| protein FAB1D [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297846424\|ref\|XP_002891093.1\| phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis lyrata subsp. lyrata] gi\|297336935\|gb\|EFH67352.1\| phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		912
TAIR\|locus:2026109		1456	FAB1D "FORMS APLOID AND BINUCL	0.323	0.202	0.744	5.7e-178
TAIR\|locus:2091050		1791	FAB1B "FORMS APLOID AND BINUCL	0.325	0.165	0.606	8.5e-137
TAIR\|locus:2125884		1757	FAB1A "FORMS APLOID AND BINUCL	0.328	0.170	0.592	9.4e-131
TAIR\|locus:2013965		1648	FAB1C "FORMS APLOID AND BINUCL	0.311	0.172	0.581	1.9e-126
CGD\|CAL0005404		2624	FAB1 [Candida albicans (taxid:	0.294	0.102	0.427	3.1e-67
UNIPROTKB\|Q5AM63		2624	FAB1 "Putative uncharacterized	0.294	0.102	0.427	3.1e-67
SGD\|S000001915		2278	FAB1 "1-phosphatidylinositol-3	0.289	0.115	0.448	2.5e-63
POMBASE\|SPBC3E7.01		1932	fab1 "1-phosphatidylinositol-3	0.292	0.138	0.427	1.3e-61
ZFIN\|ZDB-GENE-030131-9636		2100	pikfyve "phosphoinositide kina	0.307	0.133	0.416	1.3e-56
UNIPROTKB\|Q9Y2I7		2098	PIKFYVE "1-phosphatidylinosito	0.310	0.134	0.412	2.5e-54

TAIR\|locus:2026109 FAB1D "FORMS APLOID AND BINUCLEATE CELLS 1A" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1154 (411.3 bits), Expect = 5.7e-178, Sum P(2) = 5.7e-178
 Identities = 224/301 (74%), Positives = 250/301 (83%)

Query:   592 DGLNLLESLIPPEVLSPEVSIGISKSLGKGKYSVKCLYANQFRDLRSRCCPSELAYIDSL 651
             +  N LE+L PPEVL   V+ G  KS+GK KYS+  LYA+ FRDLR RCC SEL YI SL
Sbjct:  1154 ESTNRLETLPPPEVL---VTFGSVKSVGKPKYSIVSLYADDFRDLRKRCCSSELDYIASL 1210

Query:   652 SRCRNWDAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFKYMNESFDSGNQTC 711
             SRC+ WDAKGGKSKS F KTLDDRFI+KEIKKTE++SF  FA  YFKYM +S+D GNQTC
Sbjct:  1211 SRCKPWDAKGGKSKSVFAKTLDDRFIVKEIKKTEYESFVTFATEYFKYMKDSYDLGNQTC 1270

Query:   712 LAKVLGIYQVTIRQPKSG-KEMRHDLMVMENLTFERNITRQYDLKGALHARYN-TTVDGS 769
             LAKVLGI+QVT+RQPK G KE+RHDLMVMENL+F R +TRQYDLKGALHAR+  T+ +G 
Sbjct:  1271 LAKVLGIHQVTVRQPKGGGKEIRHDLMVMENLSFSRKVTRQYDLKGALHARFTATSANGE 1330

Query:   770 GDVLLDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQRREL 829
              DVLLDQNFVNDMN SPLYVS T+K+ LQRAV+NDT+FL SI+VMDYSLLVGVD +  EL
Sbjct:  1331 DDVLLDQNFVNDMNKSPLYVSKTSKQNLQRAVYNDTSFLTSINVMDYSLLVGVDDENHEL 1390

Query:   830 VCGIIDYLRQYTWDKHLETWVKSSLV-PKNVLPTVISPKDYKRRFRKFMSTHFLSVPDHW 888
             VCGIIDYLRQYTWDK LETWVKSSLV PKNV PTVISP DYK RFRKFM THFL VPD W
Sbjct:  1391 VCGIIDYLRQYTWDKQLETWVKSSLVVPKNVQPTVISPIDYKTRFRKFMKTHFLCVPDQW 1450

Query:   889 C 889
             C
Sbjct:  1451 C 1451

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016307 "phosphatidylinositol phosphate kinase activity" evidence=IEA

GO:0016308 "1-phosphatidylinositol-4-phosphate 5-kinase activity" evidence=ISS

GO:0044267 "cellular protein metabolic process" evidence=IEA

GO:0046488 "phosphatidylinositol metabolic process" evidence=IEA

TAIR\|locus:2091050 FAB1B "FORMS APLOID AND BINUCLEATE CELLS 1B" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2125884 FAB1A "FORMS APLOID AND BINUCLEATE CELLS 1A" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2013965 FAB1C "FORMS APLOID AND BINUCLEATE CELLS 1C" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

CGD\|CAL0005404 FAB1 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5AM63 FAB1 "Putative uncharacterized protein FAB1" [Candida albicans SC5314 (taxid:237561)]	Back alignment and assigned GO terms

SGD\|S000001915 FAB1 "1-phosphatidylinositol-3-phosphate 5-kinase" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

POMBASE\|SPBC3E7.01 fab1 "1-phosphatidylinositol-3-phosphate 5-kinase Fab1" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-9636 pikfyve "phosphoinositide kinase, FYVE finger containing" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9Y2I7 PIKFYVE "1-phosphatidylinositol 3-phosphate 5-kinase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.1	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XIX.2197.1	hypothetical protein (1387 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		912
cd00139		313	cd00139, PIPKc, Phosphatidylinositol phosphate kin	3e-91
pfam01504		255	pfam01504, PIP5K, Phosphatidylinositol-4-phosphate	4e-74
smart00330		342	smart00330, PIPKc, Phosphatidylinositol phosphate	1e-54
COG5253		612	COG5253, MSS4, Phosphatidylinositol-4-phosphate 5-	4e-54
smart00330		342	smart00330, PIPKc, Phosphatidylinositol phosphate	6e-15
PLN03185		765	PLN03185, PLN03185, phosphatidylinositol phosphate	4e-13

>gnl\|CDD\|238081 cd00139, PIPKc, Phosphatidylinositol phosphate kinases (PIPK) catalyze the phosphorylation of phosphatidylinositol phosphate on the fourth or fifth hydroxyl of the inositol ring, to form phosphatidylinositol bisphosphate	Back alignment and domain information

 Score =  291 bits (746), Expect = 3e-91
 Identities = 109/268 (40%), Positives = 149/268 (55%), Gaps = 11/268 (4%)

Query: 619 GKGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWDA-KGGKSKSFFVKTLDDRFI 677
               +  K      FR LR      E  Y+ SL R   W+   GGKS SFF KTLDDRFI
Sbjct: 53  LSADFKFKDYCPEVFRALRELFGIDEADYLRSLCRSPLWELSSGGKSGSFFYKTLDDRFI 112

Query: 678 IKEIKKTEFDSFDKFALHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLM 737
           IK +  +E +S  KF  +Y++Y+ ++      T L K  G+Y+V ++    GK++  D +
Sbjct: 113 IKTVSHSEIESLLKFLPNYYEYITQNP---QNTLLPKFFGLYRVKVKSGT-GKKV--DFL 166

Query: 738 VMENLTF-ERNITRQYDLKGALHARYNTTVDGSGD--VLLDQNFVNDMNSSPLYVSNTAK 794
           VMENL +    I R+YDLKG+   R  +  +   +  VL D N +  M   PL+V   +K
Sbjct: 167 VMENLFYSRLKIHRKYDLKGSTRNREASKKEKQKENPVLKDLNLLE-MIEQPLFVGEHSK 225

Query: 795 RILQRAVWNDTTFLNSIDVMDYSLLVGVDSQRRELVCGIIDYLRQYTWDKHLETWVKSSL 854
           + L   +  D  FL S+++MDYSLLVG+   R  L  GIID LR YTWDK LE WVKS  
Sbjct: 226 KALLTQIKRDCEFLESLNIMDYSLLVGIHDIRLVLYLGIIDILRTYTWDKKLEHWVKSLG 285

Query: 855 VPKNVLPTVISPKDYKRRFRKFMSTHFL 882
                 P+V+SP+ Y +RFR+FM  +FL
Sbjct: 286 HDGGKTPSVVSPEQYAKRFREFMDKYFL 313

CD alignment includes type II phosphatidylinositol phosphate kinases (PIPKII-beta), type I andII PIPK (-alpha, -beta, and -gamma) kinases and related yeast Fab1p and Mss4p kinases. Signaling by phosphorylated species of phosphatidylinositol regulates secretion, vesicular trafficking, membrane translocation, cell adhesion, chemotaxis, DNA synthesis, and cell cycling. The catalytic core domains of PIPKs are structurally similar to PI3K, PI4K, and cAMP-dependent protein kinases (PKA), the dimerization region is a unique feature of the PIPKs. Length = 313

>gnl\|CDD\|216538 pfam01504, PIP5K, Phosphatidylinositol-4-phosphate 5-Kinase	Back alignment and domain information

>gnl\|CDD\|214623 smart00330, PIPKc, Phosphatidylinositol phosphate kinases	Back alignment and domain information

>gnl\|CDD\|227578 COG5253, MSS4, Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|214623 smart00330, PIPKc, Phosphatidylinositol phosphate kinases	Back alignment and domain information

>gnl\|CDD\|215619 PLN03185, PLN03185, phosphatidylinositol phosphate kinase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		912
KOG0230		1598	consensus Phosphatidylinositol-4-phosphate 5-kinas	100.0
cd00139		313	PIPKc Phosphatidylinositol phosphate kinases (PIPK	100.0
smart00330		342	PIPKc Phosphatidylinositol phosphate kinases.	100.0
COG5253		612	MSS4 Phosphatidylinositol-4-phosphate 5-kinase [Si	100.0
KOG0229		420	consensus Phosphatidylinositol-4-phosphate 5-kinas	100.0
PLN03185		765	phosphatidylinositol phosphate kinase; Provisional	100.0
PF01504		252	PIP5K: Phosphatidylinositol-4-phosphate 5-Kinase;	100.0
KOG0230		1598	consensus Phosphatidylinositol-4-phosphate 5-kinas	93.28

>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]	Back alignment and domain information

Probab=100.00  E-value=9e-165  Score=1472.37  Aligned_cols=807  Identities=42%  Similarity=0.676  Sum_probs=602.5

Q ss_pred             ccccccCCCCCCCCCCccccceeeeecCceEEEEEEeCCCccCCCCCCCCcEEEeecCCcCcCCCCCCCCCceeeccccc
Q 002527            6 NCNILQRKQCASCSELPEAHFYYYARHNKQLTIRVKRLPDRIRLSGEAEGKLWMWSRCGRCKTANGVPKSTKRVVISTAA   85 (912)
Q Consensus         6 ~~~~~q~~~C~sC~~pm~~Hvr~YvH~~g~ltI~v~~l~~~~~lpGe~~gkI~MWs~C~~C~~~~g~p~~Tp~vpMSd~a   85 (912)
                      +++|||+|.|++|.+||++|||||||++|||||.|++++.-  +||+.+|+|||||||++|++.   ||+|+||+|||+|
T Consensus       782 ~~~f~~~~~C~sC~~~~laHv~~yvh~~g~l~I~v~~~~e~--l~~e~~~kI~~w~~ClkC~~~---~~sT~rv~~Sdaa  856 (1598)
T KOG0230|consen  782 DYLFDQRYMCPSCNEPMLAHVRCYVHGNGSLTISVKKLPEL--LPGEQKGKIWMWSRCLKCNRF---PPSTRRVVMSDAA  856 (1598)
T ss_pred             HHHhcccccCccccchHHHHHHHHhhccCceEEEeeccccc--cccccCceEEEEeccccCCCC---CCCcceeEcchhh
Confidence            46999999999999999999999999999999999999865  999999999999999999997   9999999999999


Q ss_pred             cccccccchhhccccCcccCCCCCCCCCcccccccccccCCeEEEEEeceeeeeEeecCCceeEeecchhHHHHHHHHHH
Q 002527           86 CGLSFGKFLELSFSHHSSSTRLSSCGHSLHRDFLYFFGLGPMVGMFKYSPFTTYNMCVPPQKLEFSNSINKWLKEEFQNV  165 (912)
Q Consensus        86 w~lSFGKfLELsF~~h~~~~R~~~CgHslhrDhlryFg~~~mVA~F~YspI~v~ev~lPp~~l~f~~~~~~~l~~E~~~v  165 (912)
                      |+|||||||||+||+|++++|+++|||+||||||||||||+|||+|+|++|++|+|++||.+|+|++.+++|+++|+++|
T Consensus       857 w~lSfgKfLEl~fs~~a~~~R~~~C~Hsl~rD~L~ffgf~~mva~f~ys~i~v~~v~lpp~~l~~~~~~~~~~~~e~k~v  936 (1598)
T KOG0230|consen  857 WGLSFGKFLELSFSNHATANRVASCGHSLHRDCLRFFGFGNMVACFRYSPIEVYEVDLPPSKLEFNHIQQEWLQEEIKEV  936 (1598)
T ss_pred             HhhhHHHHHHhhhccccccccccCCcchhhhhhhhhcccCCceeeeeeccceeEEEeCChhhcccchhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999966669999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHHHHH
Q 002527          166 YTKGILLFSEVESSLKQIGSRFVGSTLNLQGSLKEFSVTSEILKQERSVFEVDIQKTVAKKVHSDEALHKLLSLNRLRWE  245 (912)
Q Consensus       166 ~~k~~~~f~~V~~rL~~i~~d~~~~~~~~~~~~~~i~el~~lL~~e~~~f~~~l~~~~~~~~~~~~~~~~iL~lN~l~r~  245 (912)
                      ..||+.+|++|.++|.+|+.+.++        ...|++|+.+|++|+.+|++.|+.++.+....++..+++|.||++||.
T Consensus       937 ~~k~~~~~n~v~~~l~~i~~~~~~--------~~~i~~l~~~l~~e~~~f~~~l~~~~~~~~~~~~~s~d~l~l~~~rr~ 1008 (1598)
T KOG0230|consen  937 IEKGEELYNEVLERLSRIAEKDEN--------RPLIQELKELLKHEKKEFKQNLQPIFTLEVDDGQLSHDILALNRDRRA 1008 (1598)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccc--------cchhhhhhhhhhhhHHHHHHhhhhhhhhccccCcchhhHHHHHHHHHH
Confidence            999999999999999999998322        357899999999999999999999999988889999999999999999


Q ss_pred             HHHhhhhhhHHHhhccCCCCCccccCCCCCCCCCccccccCCCcCCCCCCCCCcccCC--CCCCccCCCCCcccCCcchh
Q 002527          246 LLIESCIWDRRLHSLLLPDPTVVITGATEKPGPEQTKVKMDGTTAKGNEVPEPEVDSG--NGDNVSNNFGNLEVLPDVAA  323 (912)
Q Consensus       246 Ll~~~~~Wd~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  323 (912)
                      |++.++.||.||+.+....+.+  ++       +.++.+..-|.++......|+.+..  .+..+. .++         .
T Consensus      1009 l~~~s~~w~~~l~s~~~~~k~~--~~-------~~~~~~~~~~~~~~~~~r~p~~~k~~~~~~~~~-~~~---------s 1069 (1598)
T KOG0230|consen 1009 LLASSYLWDERLISLSKSLKLE--SS-------KDTKPKESETNSTAKRKRSPEPQKGVDEDSFLT-DSS---------S 1069 (1598)
T ss_pred             HHhhhccccccchhhhhhhccc--cc-------cccccccccccCccccccCchhhcccccccccc-ccc---------c
Confidence            9999999999999876544411  11       0000000111111111112221111  001000 000         0


Q ss_pred             hhhhhcccccCCCCCCCCCCcccccccccccccccc---cccCCCcccccc-ccccccccccccCCCCCccccccccccc
Q 002527          324 EADELVVKEIPIDGPDRESGERDHKKTTVLKDVETS---IASDLSSTSLAN-EDSMVRSNVSDYLSGDDNVQAGKFLMSE  399 (912)
Q Consensus       324 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~---~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (912)
                      ..+......+|...+....+........+.++.+.+   .++......++. .+.+....+...+.++    ..+   + 
T Consensus      1070 ~~~~~~~~~lp~~~~s~~~d~~~~~~~~~~~~~~s~~~~~~~v~n~~s~~~~~~~~~~~~l~~~~~g~----r~~---~- 1141 (1598)
T KOG0230|consen 1070 DVSSLEHLNLPLPEDSNSTDTGLSGPSEVLEDNESIDEMLGSVRNTYSLANKVRKILKQILDSATIGN----RAN---P- 1141 (1598)
T ss_pred             ccCccccccCCCCCcccccchhccCcccccccccchhhcccccccccchhhHHHHHHHHhcccccccc----ccc---C-
Confidence            000000001111000000000000000001110000   000000000000 0000101110001110    000   0 


Q ss_pred             ccccccccCccccccCCCCccCCCCCCCccccccccchhhhccCcccCCchHHHH-HHHHhhhcCcCCccccccCCCCCC
Q 002527          400 NLQVDKVVPNSQYLANSGSVVDPNASKNETSTHSLLSDLEKLNGWFWMPFSELQQ-IYMKDLQRGFVPKFECVSRYTPEH  478 (912)
Q Consensus       400 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~k~~~~~~l~~~~~~~~~~p~~  478 (912)
                           ...|........    +..  ..+..++.   .-.+...|++.||.++++ ...++.+.+ ..+........|.+
T Consensus      1142 -----~~~P~s~~~~~~----~~~--~~~~~~~~---~e~~~~~~~e~~~~~~~~~~~~~e~~ln-s~~~~~~~~~~~k~ 1206 (1598)
T KOG0230|consen 1142 -----KSSPFSGQDHST----DLP--LESNPIHV---LEKELSSWIEDPLTNMYYREATKELSLN-SQKNSAETKEPPKY 1206 (1598)
T ss_pred             -----CCCCCchhhhcc----ccc--cccCCccc---cccccHHHHhhhhhhHhHHHHHHHHHhh-cchhhcccccCCcC
Confidence                 011111000000    000  00011111   112567899999999987 555554332 22222233457888


Q ss_pred             CchhhhhhhccCcccccccCCCCccccccCCCchhHHHHHhhccCCCccccccccCCCCCCCCccccccccccccccccc
Q 002527          479 LPTVYQLISEEGTRMHIPLGAENYMVSDYEGELSSIIACALAVLKEMPLSTVVFNEDSGRDGDMAVKTIDSLRSLTRIPT  558 (912)
Q Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~v~V~edEpSSiIAyaL~s~ey~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  558 (912)
                      +++......++++||++|++.++.+++||||||+|+|||||++.+|.....        .+|..+.. ..+ ++..++..
T Consensus      1207 ~~s~~~s~~~~~~rLl~p~~~ndl~vp~~edpp~s~ia~al~s~~~~~q~~--------~p~~sis~-~~S-~~~~~~s~ 1276 (1598)
T KOG0230|consen 1207 PSSESESEPESSSRLLLPLGLNDLVVPVYEDPPPSLIAYALSSKERINQES--------SPGLSISF-SLS-NLQGRLSK 1276 (1598)
T ss_pred             cccccccccccccceeccccCCcccCCcccCCCchhhhhhhcchhhccCCC--------CCCccccc-ccc-ccccchhh
Confidence            877666677899999999999999999999999999999999966654221        11211110 000 00000000


Q ss_pred             ccc-cccccCCCCCCcccccccccCccccccccccccccccccCCCCCCCCceeecccccCCCcceEEEEecHHHHHHHH
Q 002527          559 MAS-SLWSVNGSSDSDSIYASLSISSEDSRFSSFDGLNLLESLIPPEVLSPEVSIGISKSLGKGKYSVKCLYANQFRDLR  637 (912)
Q Consensus       559 ~~~-~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~y~p~~F~~LR  637 (912)
                      ... ..|. ..+.+...    +  .     .+...   ..+.++++. .+..+++++.++.|+.+|+|+||||++|++||
T Consensus      1277 ~~e~~~~~-~~sl~~s~----l--~-----~s~~~---~~e~l~~~~-~~~~~h~~~~f~egk~k~svk~~yAe~F~~LR 1340 (1598)
T KOG0230|consen 1277 ISEFDDTK-SESLDNSG----L--E-----SSSYR---RGENLQKSK-LETRTHLEYQFSEGKAKYSVKCYYAEQFRALR 1340 (1598)
T ss_pred             hhhhhhhh-hccccccc----c--c-----hhhhc---chhhccccc-cccccceeeeccCCceEEEEEEEehhhHHHHH
Confidence            000 0000 00000000    0  0     01111   223333331 23457777888899999999999999999999


Q ss_pred             HHcCCChHHHHHHhccCCCCCCCCCCccceEEeecCCcEEEEeCCHHHHHHHHHHHHHHHHHHhhhcCCCCCcchheeee
Q 002527          638 SRCCPSELAYIDSLSRCRNWDAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFKYMNESFDSGNQTCLAKVLG  717 (912)
Q Consensus       638 ~~~gise~dyi~SLs~~~~~~~sgGKSGs~F~~T~D~rFIIKtisk~E~~~f~~~lp~Yf~yl~~~~~~~~~TlL~Ki~G  717 (912)
                      +.||.++++||+||+||.+|.++|||||++|++|.|+|||||+|++.|+++|++|||+||+||.+++++..||+||||||
T Consensus      1341 ~~c~~sEe~fIrSLsRc~~W~aqGGKSgs~F~KTlDDRFIiKq~sk~EleSFikFAP~YFkYl~~s~~~~~PT~LAKIlG 1420 (1598)
T KOG0230|consen 1341 KICCPSEEDFIRSLSRCVKWEAQGGKSGSFFAKTLDDRFIIKQMSKTELESFIKFAPAYFKYLTESISQKSPTCLAKILG 1420 (1598)
T ss_pred             HhhCchHHHHHHHHhcCcccccCCCcccceeeccccchhhhhhccHHHHHHHHhhhHHHHHHHHHHHhcCCcchhhhhhe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeeccCCCceeEEEEEEEeecCCCcceeeeeecCCccccccccCCCCCCceeeccchhcccCCCCeeeChhhHHHH
Q 002527          718 IYQVTIRQPKSGKEMRHDLMVMENLTFERNITRQYDLKGALHARYNTTVDGSGDVLLDQNFVNDMNSSPLYVSNTAKRIL  797 (912)
Q Consensus       718 ly~i~~k~~~~G~~~k~~fvVMeNlf~~~~I~~~YDLKGS~~~R~~~~~~~~~~vL~D~nf~~~~~~~pi~l~~~~k~~L  797 (912)
                      +|||.+|++++|++.|+++||||||||+++++|+||||||.|||++.++.+.+.||||+||+++++++||||++++|+.|
T Consensus      1421 iyqV~vK~~~sgke~K~DvmVMENLfY~r~vsRifDLKGS~RnR~v~~t~~~d~VLLDeNlVe~~~~sPIfV~~~sK~lL 1500 (1598)
T KOG0230|consen 1421 IYQVSVKSPKSGKETKMDVMVMENLFYGRKVSRIFDLKGSLRNRYVPTTSGADEVLLDENLVEMMWTSPIYVGSHSKRLL 1500 (1598)
T ss_pred             eEEEEEecCCCCceeEeeeeeehhhhhccccceeeeccchhhhccCCCCCCCceEEecHHHHhhhhcCCeeehHhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhHHHHhhCCCceeeeeeEEecCCceeEEeEEEeeeccchhhHHHHHHHHhc--CCCCCCCcccChhHHHHHHHH
Q 002527          798 QRAVWNDTTFLNSIDVMDYSLLVGVDSQRRELVCGIIDYLRQYTWDKHLETWVKSSL--VPKNVLPTVISPKDYKRRFRK  875 (912)
Q Consensus       798 ~~qL~~Dt~FL~s~nIMDYSLLVGi~~~~~~~~lGIID~L~~Yt~~KklE~~vK~~~--~~~~~~~Tvi~P~~Y~~RF~~  875 (912)
                      .++|||||.||+++||||||||||||+++++||+|||||+||||||||||+|||..+  +|+|..||||+|++|++||++
T Consensus      1501 ~~aiwNDT~FLas~~VMDYSLLVGvD~e~~ELvlGIIDfiRtYTWDKkLESWVK~sGl~gpk~~~PTVVSP~qYK~RFRk 1580 (1598)
T KOG0230|consen 1501 RRAIWNDTSFLASINVMDYSLLVGVDDENNELVLGIIDFIRTYTWDKKLESWVKSSGLGGPKNKQPTVVSPEQYKTRFRK 1580 (1598)
T ss_pred             HHHHhcchHHhhhcccceeeeEEEeeCCCCeEEEEehHhhhhhhhhhhhhhheeccccccCCCCCCceeCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999996  789999999999999999999


Q ss_pred             HHhcccccCCcccCCCCC
Q 002527          876 FMSTHFLSVPDHWCSPES  893 (912)
Q Consensus       876 ~m~~~F~~vpd~w~~~~~  893 (912)
                      ||+.||++|||+|+++|.
T Consensus      1581 AMd~YfL~VPD~Wtg~g~ 1598 (1598)
T KOG0230|consen 1581 AMDTYFLMVPDQWTGLGV 1598 (1598)
T ss_pred             HHhheeeecCCcccCCCC
Confidence            999999999999999873

>cd00139 PIPKc Phosphatidylinositol phosphate kinases (PIPK) catalyze the phosphorylation of phosphatidylinositol phosphate on the fourth or fifth hydroxyl of the inositol ring, to form phosphatidylinositol bisphosphate	Back alignment and domain information

>smart00330 PIPKc Phosphatidylinositol phosphate kinases	Back alignment and domain information

>COG5253 MSS4 Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG0229 consensus Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]	Back alignment and domain information

>PLN03185 phosphatidylinositol phosphate kinase; Provisional	Back alignment and domain information

>PF01504 PIP5K: Phosphatidylinositol-4-phosphate 5-Kinase; InterPro: IPR002498 This entry represents a conserved region from the common kinase core found in the type I phosphatidylinositol-4-phosphate 5-kinase (PIP5K) family as described in []	Back alignment and domain information

>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		912
1bo1_A		416	Phosphatidylinositol Phosphate Kinase Type Ii Beta		1e-12
2gk9_A		392	Human Phosphatidylinositol-4-Phosphate 5-Kinase, Ty		2e-12
2ybx_A		394	Crystal Structure Of Human Phosphatidylinositol-5-P		9e-12

>pdb|1BO1|A Chain A, Phosphatidylinositol Phosphate Kinase Type Ii Beta Length = 416

Back alignment and structure

Iteration: 1

Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/201 (30%), Positives = 100/201 (49%), Gaps = 19/201 (9%) Query: 633 FRDLRSRCCPSELAYIDSLSRCR--NWDAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFD 690 FR+LR R + Y +S++R N D++G + + F+ T D RF+IK + + Sbjct: 103 FRNLRERFGIDDQDYQNSVTRSAPINSDSQG-RCGTRFLTTYDRRFVIKTVSSEDVAEMH 161 Query: 691 KFALHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFERNIT- 749 Y +++ E GN T L + LG+Y++T+ G E MV+ F +T Sbjct: 162 NILKKYHQFIVEC--HGN-TLLPQFLGMYRLTV----DGVET---YMVVTRNVFSHRLTV 211 Query: 750 -RQYDLKGALHARYNTTVDGSGDV--LLDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTT 806 R+YDLKG+ AR + + + D+ D +F+N+ L+V +K+ + D Sbjct: 212 HRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLNE--GQKLHVGEESKKNFLEKLKRDVE 269 Query: 807 FLNSIDVMDYSLLVGVDSQRR 827 FL + +MDYSLLVG+ R Sbjct: 270 FLAQLKIMDYSLLVGIHDVDR 290

PyMOL of 1bo1

>pdb|2GK9|A Chain A, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii, Gamma Length = 392

Back alignment and structure

>pdb|2YBX|A Chain A, Crystal Structure Of Human Phosphatidylinositol-5-Phosphate 4-Kinase Type-2 Alpha Length = 394

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		912
2ybx_A		394	Phosphatidylinositol-5-phosphate 4-kinase type-2;	4e-43
2ybx_A		394	Phosphatidylinositol-5-phosphate 4-kinase type-2;	6e-06
2gk9_A		392	Phosphatidylinositol-4-phosphate 5-kinase, type II	3e-42
2gk9_A		392	Phosphatidylinositol-4-phosphate 5-kinase, type II	3e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-18
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-12

>2ybx_A Phosphatidylinositol-5-phosphate 4-kinase type-2; transferase, signalling; HET: PHD; 2.56A {Homo sapiens} PDB: 1bo1_A Length = 394	Back alignment and structure

 Score =  160 bits (406), Expect = 4e-43
 Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 15/217 (6%)

Query: 615 SKSLGKGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNW-DAKGGKSKSFFVKTLD 673
           +K      +  K      FR+LR R    +  + +SL+R     +    +S + F  + D
Sbjct: 69  NKENMPSHFKFKEYCPMVFRNLRERFGIDDQDFQNSLTRSAPLPNDSQARSGARFHTSYD 128

Query: 674 DRFIIKEIKKTEFDSFDKFALHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMR 733
            R+IIK I   +          Y +Y+ E       T L + LG+Y++ +        + 
Sbjct: 129 KRYIIKTITSEDVAEMHNILKKYHQYIVECH---GITLLPQFLGMYRLNVD------GVE 179

Query: 734 HDLMVMENLTFER-NITRQYDLKGALHARYNTTVDGSGD--VLLDQNFVNDMNSSPLYVS 790
             ++V  N+   R ++ R+YDLKG+  AR  +  + + +   L D +F+N+     +Y+ 
Sbjct: 180 IYVIVTRNVFSHRLSVYRKYDLKGSTVAREASDKEKAKELPTLKDNDFINEGQ--KIYID 237

Query: 791 NTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQRR 827
           +  K++    +  D  FL  + +MDYSLLVG+    R
Sbjct: 238 DNNKKVFLEKLKKDVEFLAQLKLMDYSLLVGIHDVER 274

PyMOL of 2ybx

>2ybx_A Phosphatidylinositol-5-phosphate 4-kinase type-2; transferase, signalling; HET: PHD; 2.56A {Homo sapiens} PDB: 1bo1_A Length = 394	Back alignment and structure

>2gk9_A Phosphatidylinositol-4-phosphate 5-kinase, type II, gamma; phosphoinositide, structural genomics, structural genomics consortium, SGC, transferase; 2.80A {Homo sapiens} Length = 392	Back alignment and structure

>2gk9_A Phosphatidylinositol-4-phosphate 5-kinase, type II, gamma; phosphoinositide, structural genomics, structural genomics consortium, SGC, transferase; 2.80A {Homo sapiens} Length = 392	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		912
d1bo1a_		383	d.143.1.2 (A:) Phosphatidylinositol phosphate kina	8e-47

>d1bo1a_ d.143.1.2 (A:) Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta {Human (Homo sapiens) [TaxId: 9606]} Length = 383	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: SAICAR synthase-like
superfamily: SAICAR synthase-like
family: Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta
domain: Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  170 bits (431), Expect = 8e-47
 Identities = 70/297 (23%), Positives = 120/297 (40%), Gaps = 21/297 (7%)

Query: 616 KSLGKGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWDAKG-GKSKSFFVKTLDD 674
           K     ++  K      FR+LR R    +  Y +S++R    ++   G+  + F+ T D 
Sbjct: 53  KENLPSRFKFKEYCPMVFRNLRERFGIDDQDYQNSVTRSAPINSDSQGRCGTRFLTTYDR 112

Query: 675 RFIIKEIKKTEFDSFDKFALHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRH 734
           RF+IK +   +          Y +++ E       T L + LG+Y++T+        +  
Sbjct: 113 RFVIKTVSSEDVAEMHNILKKYHQFIVECH---GNTLLPQFLGMYRLTV------DGVET 163

Query: 735 DLMVMENLTFER-NITRQYDLKGALHARYNTTVDGSGD--VLLDQNFVNDMNSSPLYVSN 791
            ++V  N+   R  + R+YDLKG+  AR  +  + + D     D +F+N+     L+V  
Sbjct: 164 YMVVTRNVFSHRLTVHRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLNE--GQKLHVGE 221

Query: 792 TAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQRRELVCGIIDYLRQYTWDKHLETWVK 851
            +K+     +  D  FL  + +MDYSLLVG+    R     +    R    +   +    
Sbjct: 222 ESKKNFLEKLKRDVEFLAQLKIMDYSLLVGIHDVDRAEQEEMEVEERAEDEECENDGVGG 281

Query: 852 SSLVPKNVLPTVISPKDYKRRFRKFMSTHFLSVPDHWCSP--ESDDPCEL--CGIKD 904
           + L      P   SP +     R F    F    D +     ES    E+    I D
Sbjct: 282 NLLCSYGTPPD--SPGNLLSFPRFFGPGEFDPSVDVYAMKSHESSPKKEVYFMAIID 336

PyMOL of d1bo1a_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		912
d1bo1a_		383	Phosphatidylinositol phosphate kinase IIbeta, PIPK	100.0
d1w2fa_		276	Inositol 1,4,5-trisphosphate 3-kinase A, IP3K A {H	94.45

>d1bo1a_ d.143.1.2 (A:) Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: SAICAR synthase-like
superfamily: SAICAR synthase-like
family: Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta
domain: Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=548.16  Aligned_cols=252  Identities=27%  Similarity=0.464  Sum_probs=228.9

Q ss_pred             CCCEEEEEECHHHHHHHHHHCCCCHHHHHHHHCCCCCCC-CCCCCCCCEEEEECCCCEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             866599990699999999871999688999741377788-9998754107864289389973788999999999999999
Q 002527          620 KGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWD-AKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFK  698 (912)
Q Consensus       620 ~~~f~~~~y~p~~F~~LR~~~gi~e~dy~~SL~~~~~~~-~sgGKSGs~F~~T~D~rFIIKtisk~E~~~l~k~lp~Yf~  698 (912)
                      +.+|+|++|+|.+|++||++||+++++|+.||+++..|. .++|||||+||+|+|+|||||||+++|++.|+++||.||+
T Consensus        57 ~~~fkfk~Y~P~vF~~lR~~fgi~~~dy~~Sl~~~~~~~~~s~GkSGs~F~~t~D~rfiiKti~~~E~~~l~~~l~~Y~~  136 (383)
T d1bo1a_          57 PSRFKFKEYCPMVFRNLRERFGIDDQDYQNSVTRSAPINSDSQGRCGTRFLTTYDRRFVIKTVSSEDVAEMHNILKKYHQ  136 (383)
T ss_dssp             CSEEEEEEECHHHHHHHHHHTTCCHHHHHHHHHSSCCEECCCC----CCEEECTTSSEEEECCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHH
T ss_conf             88707998379999999998198989999972788654345657767867880699689998579999999999899999


Q ss_pred             HHHHHCCCCCCCCHHEEEEEEEEEEECCCCCCEEEEEEEEEEECCCC-CCEEEEEECCCCCCCCCCCCCCCC--CCEEEC
Q ss_conf             98520389998411212347899543269993257999998213789-631156503775334455677999--850104
Q 002527          699 YMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFE-RNITRQYDLKGALHARYNTTVDGS--GDVLLD  775 (912)
Q Consensus       699 yi~~~~~~~~~TlL~Ki~Gly~i~~k~~~~g~~~k~~~iVMeNlf~~-~~i~~~YDLKGS~~~R~~~~~~~~--~~vllD  775 (912)
                      |+.++   +|+|||+||||+|+|+++    |.  +.|||||+|+|++ ..|+++||||||+++|.+.+.++.  ..+|||
T Consensus       137 h~~~~---n~~TLL~k~~Gly~i~~~----~~--~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~~lKD  207 (383)
T d1bo1a_         137 FIVEC---HGNTLLPQFLGMYRLTVD----GV--ETYMVVTRNVFSHRLTVHRKYDLKGSTVAREASDKEKAKDLPTFKD  207 (383)
T ss_dssp             HHHTT---TTCCSSCCEEEEEEEEET----TE--EEEEEEEECSSCSSSCCSEEEEECCCSSSSCSCSGGGSSSCCEECH
T ss_pred             HHHHC---CCCCCHHHHHEEEEEEEC----CC--EEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             99860---787578763430378747----95--2799998424567765103676158632567675334555204656


Q ss_pred             CCHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEC-------------------------------
Q ss_conf             0001004998824373569999999996699782089820000568854-------------------------------
Q 002527          776 QNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDS-------------------------------  824 (912)
Q Consensus       776 ~nf~~~~~~~~i~l~~~~k~~L~~qL~~Dt~FL~s~nIMDYSLLVGi~~-------------------------------  824 (912)
                      +||++..  .+|+|+++.++.|++||++||.||+++||||||||||||.                               
T Consensus       208 ~df~~~~--~~i~l~~~~k~~l~~ql~~D~~fL~~~~imDYSLLvGIh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (383)
T d1bo1a_         208 NDFLNEG--QKLHVGEESKKNFLEKLKRDVEFLAQLKIMDYSLLVGIHDVDRAEQEEMEVEERAEDEECENDGVGGNLLC  285 (383)
T ss_dssp             HHHHHTT--CCCCCCSSHHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEEHHHHHHHHHHHHHHTTTTC------------
T ss_pred             HHHHHCC--CCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf             7787646--88230799999999999999999987786750436755122111122110011245554445555643223


Q ss_pred             ----------------------------------------CCCEEEEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             ----------------------------------------8941598378766303504589999987339999988535
Q 002527          825 ----------------------------------------QRRELVCGIIDYLRQYTWDKHLETWVKSSLVPKNVLPTVI  864 (912)
Q Consensus       825 ----------------------------------------~~~~l~iGIID~L~~Yt~~KklE~~~K~~~~~~~~~~Tvi  864 (912)
                                                              .+.+||+|||||||+|||.|++||++|+..++.+..+|||
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vyyiGIIDiLq~Y~~~KklE~~~Ksl~~~~g~~IS~v  365 (383)
T d1bo1a_         286 SYGTPPDSPGNLLSFPRFFGPGEFDPSVDVYAMKSHESSPKKEVYFMAIIDILTPYDTKKKAAHAAKTVKHGAGAEISTV  365 (383)
T ss_dssp             -----------------------CCSCCTTTSTTEEECSSTTEEEEEEECCSCC------------------CCCSSSCC
T ss_pred             CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             45789788302221553346644577765445445678997599999999715779689999999999211889896127


Q ss_pred             CHHHHHHHHHHHHHCCCC
Q ss_conf             936799999999841144
Q 002527          865 SPKDYKRRFRKFMSTHFL  882 (912)
Q Consensus       865 ~P~~Y~~RF~~~m~~~F~  882 (912)
                      +|++|++||++||+++|.
T Consensus       366 ~P~~Ya~RF~~Fi~~I~~  383 (383)
T d1bo1a_         366 NPEQYSKRFNEFMSNILT  383 (383)
T ss_dssp             CHHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHHHHCC
T ss_conf             989999999999998649

PyMOL of d1bo1a_

>d1w2fa_ d.143.1.3 (A:) Inositol 1,4,5-trisphosphate 3-kinase A, IP3K A {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure