Citrus Sinensis ID: 002544

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910
Protein Sequence
MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAVSHGKRARADDYEAGVGSVQEMDTNDKVLRANKRSRSTTSPLKYTQPEDGGSVFRGDDDNLSQQSNQEDYTKFTVQKLKQELTKHNFGAELLQLRNPNKKEILALYEKCILQKS
Secondary Structure (PSIPRED)
cEEEcccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHcccccccccccccHHHHHHHHHcccccccHHHHHHcHHHHHHHHHcccccccccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cEEEccccHHcHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHcccEEEEEEHEEEEEEcccccccHHHHHHHHHcccccccHHHHHcccHHHHHHHHccccEEEEEccccccHHHHHHHHHccHHHccHHHHHHHHHHHHHHHHcccccccccEEEccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccccccccccEEEcccccccccEccccccccccccccccccccccEEcccccccccccccccccEEHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHHHHEcccc
Coil and Loop (DISEMBL)
mfiynqmggidesAIDRLSLVTQMTKHIRirasggkttpselgqfsPIFVWLLRDFYLDLvednrkitprDYLEIAlrpvqgsgrdiaAKNEIRDSIralfpdrecftlvrplsnenelqrldqISLDRLRPEFRAGLDALTKFVFertrpkqvgatvltgpVLIGITESYLdainngavptissswQSVEEAECRRAYDSATETYmstfdrskppeevalGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRAachssdasIDNVVKVLDGLISeyetschgpgkwQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLqgenislrekSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKlravshgkraraddyeagvgsvqemdtndkvlrankrsrsttsplkytqpedggsvfrgdddnlsqqsnqedYTKFTVQKLKQELTKHNfgaellqlrnpnKKEILALYEKCILQKS
Flexible Loop (DISEMBL)
mfiynqmggidesAIDRLSLVTQMTKHIRirasggkttpselgQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEialrpvqgsgrdiaAKNEIRDSIRALFPDRECFTlvrplsnenelqrldqislDRLRPEFRAGLDALTKfvfertrpkqvgatvltgpvLIGITESYLDAINNGAVPtissswqsvEEAECRRAYDSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRAachssdasiDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSeylkryddaindKKKLADDYTSRinnlqgenislrekssslsKTVDSLkneisdwkrKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIvqertskemqqredVLREEFSSTLAEKEEEMKekatkiehaeqCLTTLRLELKAAESKMRSYEveissqkletkelSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKeakkateladRERAEAAaarkgksefenLAMERMAVIERVQRQIESlerqktdltnevnrireselealskvalleARVEEREKEIEsllesnneqrastvKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARlnetalgsklravshgkraraddyeagvgsvqemdtndkvlrankrsrsttsplkytqpedggsvFRGDDDNLSQQSNQEDYTKFTVQKLKQELTKHNFgaellqlrnpnkkeILALYEKCILQKS
Low Complexity Region (SEG)
MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTaaearlaaareqalsaqeeVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAekeeemkekatkieHAEQCLTTLRLELKAAESKMRSYEVEIssqkletkelsekleAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQerckvaekeakkateladreraeaaaarKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKvallearveerekeiesllesNNEQRASTVKKLEDlleserrsraaanamaerlslEVQSAQAKLDEMQQELTKARLNETALGSKLRAVSHGKRARADDYEAGVGSVQEMDTNDKVLRANKRSRSTTSPLKYTQPEDGGSVFRGDDDNLSQQSNQEDYTKFTVQKLKQELTKHNFGAELLQLRNPNKKEILALYEKCILQKS
Disordered region (IsUnstruct)
***Y**MGGIDESAIDRLSLVTQMTKHIRIRA********ELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAVPTISSSWQSV**********************************HEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSE**SLMLKYR********************************************************************************************************************************WKRKYGVAVRE*****************************************************CLTTL**********************************************************************************************************************************************************************************************************************************************************************************************************************FTVQKLKQELTKHNFGAELLQLRNPNKKEILALYEKCIL***
Disordered Region (DISOPRED)
MFIYNQMGGIDESAIDRLSLVTQMTKH*****************FSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRP*************IRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVE*****************************LGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEAD*R*************************VVKVLDGLISEY*******GKWQKLATFLQQSSEGPILDLVKRLIDQIG*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************ALYEKCIL***
Disordered Region (DISEMBL)
MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAVPTIS************RAYDSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLR*************KNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTA**********************KRKYGVAVREAKAALEKAAIVQER*************EEFSSTL************KIEHAEQCLTTLRLELKAA***************LETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKV*************************KSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKL**************EAGVGSVQEMDTNDKVLRANKRSRSTTSPLKYTQPEDGGSVFRGDDDNLSQQSNQEDYTKFTVQKLKQELTKHNFGAELLQLRNPNKKEILALYEKCILQKS
Disordered Region (DISPRO)
MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRAS**KTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAVSHGKRARA*DYEAGVGSVQEMDT*******************************************EDYTKFTVQKLKQELTKHNFGAELLQLRNPNKKEILALYEKCILQK*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSExxxxxxxxxxxxxxxxxxxxxxxxxxxxKSEYLKRYDDAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQKAMEDQVCSExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYGVAVREAKAALEKAAIVQERTSKEMQQREDVLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAAARKGKSEFENLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxALSKxxxxxxxxxxxxxxxxxxxxxxxxxxxxTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxETALGSKLRAVSHGKRARADDYEAGVGSVQEMDTNDKVLRANKRSRSTTSPLKYTQPEDGGSVFRGDDDNLSQQSNQEDYTKFTVQKLKQELTKHNFGAELLQLRNPNKKEILALYEKCILQKS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	910	2.2.26 [Sep-21-2011]
Q5R9T9	633	Guanylate-binding protein	yes	no	0.258	0.371	0.305	8e-29
Q61107	620	Guanylate-binding protein	no	no	0.258	0.379	0.305	8e-29
Q6ZN66	633	Guanylate-binding protein	yes	no	0.257	0.369	0.316	1e-28
Q01514	589	Interferon-induced guanyl	no	no	0.224	0.346	0.334	1e-27
Q8N8V2	638	Guanylate-binding protein	no	no	0.219	0.313	0.327	2e-27
Q63663	589	Interferon-induced guanyl	no	no	0.224	0.346	0.320	7e-27
P32456	591	Interferon-induced guanyl	no	no	0.224	0.345	0.311	4e-26
Q9H0R5	595	Guanylate-binding protein	no	no	0.224	0.342	0.311	9e-26
Q96PP9	640	Guanylate-binding protein	no	no	0.252	0.359	0.295	9e-26
Q9Z0E6	589	Interferon-induced guanyl	no	no	0.224	0.346	0.315	1e-25

>sp|Q5R9T9|GBP6_PONAB Guanylate-binding protein 6 OS=Pongo abelii GN=GBP6 PE=2 SV=1

 Score =  129 bits (325), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 134/242 (55%), Gaps = 7/242 (2%)

Query: 2   FIYNQMGGIDESAIDRLSLVTQMTKHIRIRASG---GKTTPSELGQFSPIFVWLLRDFYL 58
           FIYN M  I+  A+++L  VT++T+ I+ ++S    G    +E   F P F+W +RDF L
Sbjct: 126 FIYNSMSTINHQALEQLHYVTELTELIKAKSSPRPDGVDDSTEFVSFFPDFIWTVRDFTL 185

Query: 59  DLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENE 118
           +L  +   IT  +YLE AL+ +QG+   +   N  R+ IR  FP R+CF   RP ++++ 
Sbjct: 186 ELKLNGHPITEDEYLENALKLIQGNNPRVQTSNLPRECIRRFFPKRKCFIFDRPTNDKDL 245

Query: 119 LQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGITESYLDAINN 177
           L  ++++S  +L P+F+   +  + ++F   R K +    ++TG  L  +  +Y++A+N+
Sbjct: 246 LANIEKVSEKQLDPKFQEQTNIFSSYIFTHARTKTLREGIIVTGNRLGTLAVTYVEAVNS 305

Query: 178 GAVPTISSSWQSVEEAECRRAYDSATETYMSTF-DRSKPPEEVA--LGEAHEAAVQKALA 234
           GAVP + ++  ++ + E   A   A + Y      R K P +    L + H A  ++A+A
Sbjct: 306 GAVPCLENAVITLAQRENSAAVQRAADYYSQQMAQRVKFPTDTLQELLDMHAACEREAIA 365

Query: 235 VY 236
           ++
Sbjct: 366 IF 367

Binds GTP, GDP and GMP.
Pongo abelii (taxid: 9601)

>sp|Q61107|GBP4_MOUSE Guanylate-binding protein 4 OS=Mus musculus GN=Gbp4 PE=1 SV=1

 Score =  129 bits (325), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 131/242 (54%), Gaps = 7/242 (2%)

Query: 2   FIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTT---PSELGQFSPIFVWLLRDFYL 58
           F+YN M  I++ A+++L  VT++T+ IR ++S  +      SE   F P F+W +RDF L
Sbjct: 120 FVYNSMSTINQQALEQLHFVTELTQLIRAKSSPREDKVKDSSEFVGFFPDFIWAVRDFAL 179

Query: 59  DLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENE 118
           +L  + R IT  +YLE AL+ +QG    +   N  R+ IR  FP R+CF   RP S++  
Sbjct: 180 ELKLNGRPITEDEYLENALKLIQGDNLKVQQSNMTRECIRYFFPVRKCFVFDRPTSDKRL 239

Query: 119 LQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGITESYLDAINN 177
           L +++ +  ++L   F+   +    ++F   + K + G  ++TG  L  + ++Y++AIN+
Sbjct: 240 LLQIENVPENQLERNFQVESEKFCSYIFTNGKTKTLRGGVIVTGNRLGTLVQTYVNAINS 299

Query: 178 GAVPTISSSWQSVEEAECRRAYDSATETYMSTF-DRSKPPEEVA--LGEAHEAAVQKALA 234
           G VP + ++  ++ + E   A   A + Y      R + P +    L   H A  ++A+A
Sbjct: 300 GTVPCLENAVTTLAQRENSIAVQKAADHYSEQMAQRMRLPTDTLQELLTVHAACEKEAIA 359

Query: 235 VY 236
           V+
Sbjct: 360 VF 361

Binds GTP, GDP and GMP. Hydrolyzes GTP very efficiently; GDP rather than GMP is the major reaction product. Plays a role in erythroid differentiation.

Mus musculus (taxid: 10090)

>sp|Q6ZN66|GBP6_HUMAN Guanylate-binding protein 6 OS=Homo sapiens GN=GBP6 PE=2 SV=1

 Score =  129 bits (324), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 134/243 (55%), Gaps = 9/243 (3%)

Query: 2   FIYNQMGGIDESAIDRLSLVTQMTKHIRIRASG---GKTTPSELGQFSPIFVWLLRDFYL 58
           F+YN M  I+  A+++L  VT++T+ I+ ++S    G    +E   F P F+W +RDF L
Sbjct: 126 FVYNSMSTINHQALEQLHYVTELTELIKAKSSPRPDGVEDSTEFVSFFPDFLWTVRDFTL 185

Query: 59  DLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENE 118
           +L  +   IT  +YLE AL+ +QG+   +   N  R+ IR  FP R+CF   RP ++++ 
Sbjct: 186 ELKLNGHPITEDEYLENALKLIQGNNPRVQTSNFPRECIRRFFPKRKCFVFDRPTNDKDL 245

Query: 119 LQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV--GATVLTGPVLIGITESYLDAIN 176
           L  ++++S  +L P+F+   +    ++F   R K +  G TV TG  L  +  +Y++AIN
Sbjct: 246 LANIEKVSEKQLDPKFQEQTNIFCSYIFTHARTKTLREGITV-TGNRLGTLAVTYVEAIN 304

Query: 177 NGAVPTISSSWQSVEEAECRRAYDSATETYMSTF-DRSKPPEEVA--LGEAHEAAVQKAL 233
           +GAVP + ++  ++ + E   A   A + Y      R K P +    L + H A  ++A+
Sbjct: 305 SGAVPCLENAVITLAQRENSAAVQRAADYYSQQMAQRVKLPTDTLQELLDMHAACEREAI 364

Query: 234 AVY 236
           A++
Sbjct: 365 AIF 367

Binds GTP, GDP and GMP.

Homo sapiens (taxid: 9606)

>sp|Q01514|GBP1_MOUSE Interferon-induced guanylate-binding protein 1 OS=Mus musculus GN=Gbp1 PE=1 SV=1

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/209 (33%), Positives = 112/209 (53%), Gaps = 5/209 (2%)

Query: 2   FIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKT---TPSELGQFSPIFVWLLRDFYL 58
           FIYN +G I++ A+D+L  VT++T  I+ ++S  ++     +    F PIFVW LRDF L
Sbjct: 126 FIYNSIGTINQQAMDQLHYVTELTDLIKSKSSPDQSDVDNSANFVGFFPIFVWTLRDFSL 185

Query: 59  DLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENE 118
           DL  D   ITP +YLE +L   +G+  +    N  R  IR  FP R+CF   RP  +  +
Sbjct: 186 DLEFDGESITPDEYLETSLALRKGTDENTKKFNMPRLCIRKFFPKRKCFIFDRP-GDRKQ 244

Query: 119 LQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGITESYLDAINN 177
           L +L+ I  D+L  EF   +   T ++F  +  K + G   + GP L  + ++Y+ AI +
Sbjct: 245 LSKLEWIQEDQLNKEFVEQVAEFTSYIFSYSGVKTLSGGITVNGPRLKSLVQTYVSAICS 304

Query: 178 GAVPTISSSWQSVEEAECRRAYDSATETY 206
           G +P + ++  ++ + E   A   A   Y
Sbjct: 305 GELPCMENAVLTLAQIENSAAVQKAITYY 333

Binds GTP, GDP and GMP.

Mus musculus (taxid: 10090)

>sp|Q8N8V2|GBP7_HUMAN Guanylate-binding protein 7 OS=Homo sapiens GN=GBP7 PE=2 SV=2

 Score =  125 bits (313), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 113/214 (52%), Gaps = 14/214 (6%)

Query: 2   FIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTP--------SELGQFSPIFVWLL 53
           F+YN MG I+  A+++L  VT++T+ IR      K+ P        SE   F P F+W +
Sbjct: 126 FVYNSMGTINHQALEQLHYVTELTELIR-----AKSCPRPDEVEDSSEFVSFFPDFIWTV 180

Query: 54  RDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPL 113
           RDF L+L  D   IT  +YLE AL+ + G    I   N+ R+ IR  FP ++CF   RP+
Sbjct: 181 RDFTLELKLDGHPITEDEYLENALKLISGKNPQIQNSNKPREWIRHFFPKQKCFVFDRPI 240

Query: 114 SNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVGATVL-TGPVLIGITESYL 172
           +++  L  ++++  D+L   F+   +    ++F   + K +   +L TG  L  + E+YL
Sbjct: 241 NDKKLLLHVEEVREDQLDSNFQMQSENFCSYIFTHAKTKTLREGILVTGNRLGMLVETYL 300

Query: 173 DAINNGAVPTISSSWQSVEEAECRRAYDSATETY 206
           DAIN+GA P + ++   + + E   A   A   Y
Sbjct: 301 DAINSGATPCLENAMAVLAQCENSAAVQRAANHY 334

Binds GTP, GDP and GMP.

Homo sapiens (taxid: 9606)

>sp|Q63663|GBP2_RAT Interferon-induced guanylate-binding protein 2 OS=Rattus norvegicus GN=Gbp2 PE=1 SV=2

 Score =  123 bits (308), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 115/209 (55%), Gaps = 5/209 (2%)

Query: 2   FIYNQMGGIDESAIDRLSLVTQMTKHIRIRAS---GGKTTPSELGQFSPIFVWLLRDFYL 58
           F+YN MG I++ A+D+L  VT++T  I+ ++S    G    +    F P FVW LRDF L
Sbjct: 126 FVYNSMGTINQQAMDQLHYVTELTDLIKSKSSPDQSGIDDSANFVGFFPTFVWALRDFSL 185

Query: 59  DLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENE 118
           +L  + + +TP +YLE +L   +G+ +   + NE R  IR  FP R+CF   RP +   +
Sbjct: 186 ELEVNGKLVTPDEYLEHSLTLKKGADKKTKSFNEPRLCIRKFFPKRKCFIFDRP-ALRKQ 244

Query: 119 LQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGITESYLDAINN 177
           L +L+ +  + L  EF   +   T ++F  +  K + G  ++ GP L  + ++Y+ AI++
Sbjct: 245 LCKLETLGEEELCSEFVEQVAEFTSYIFSYSAVKTLSGGIIVNGPRLKSLVQTYVGAISS 304

Query: 178 GAVPTISSSWQSVEEAECRRAYDSATETY 206
           G++P + S+  ++ + E   A   A   Y
Sbjct: 305 GSLPCMESAVLTLAQIENSAAVQKAITHY 333

Binds GTP, GDP and GMP.

Rattus norvegicus (taxid: 10116)

>sp|P32456|GBP2_HUMAN Interferon-induced guanylate-binding protein 2 OS=Homo sapiens GN=GBP2 PE=1 SV=3

 Score =  120 bits (302), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 113/209 (54%), Gaps = 5/209 (2%)

Query: 2   FIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTT---PSELGQFSPIFVWLLRDFYL 58
           F+YN MG I++ A+D+L  VT++T  I+  +S G  +    ++   F P FVW LRDF L
Sbjct: 126 FVYNSMGTINQQAMDQLHYVTELTDRIKANSSPGNNSVDDSADFVSFFPAFVWTLRDFTL 185

Query: 59  DLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENE 118
           +L  D   IT  DYLE++L+  +G+ +   + N+ R  IR  FP R+CF    P + +  
Sbjct: 186 ELEVDGEPITADDYLELSLKLRKGTDKKSKSFNDPRLCIRKFFPKRKCFVFDWP-APKKY 244

Query: 119 LQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGITESYLDAINN 177
           L  L+Q+  + L P+F   +     ++   +  K + G   + GP L  +  +Y++AI++
Sbjct: 245 LAHLEQLKEEELNPDFIEQVAEFCSYILSHSNVKTLSGGIPVNGPRLESLVLTYVNAISS 304

Query: 178 GAVPTISSSWQSVEEAECRRAYDSATETY 206
           G +P + ++  ++ + E   A + A   Y
Sbjct: 305 GDLPCMENAVLALAQIENSAAVEKAIAHY 333

Binds GTP, GDP and GMP. Hydrolyzes GTP very efficiently; GDP rather than GMP is the major reaction product.

Homo sapiens (taxid: 9606)

>sp|Q9H0R5|GBP3_HUMAN Guanylate-binding protein 3 OS=Homo sapiens GN=GBP3 PE=2 SV=3

 Score =  119 bits (299), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 113/209 (54%), Gaps = 5/209 (2%)

Query: 2   FIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKT---TPSELGQFSPIFVWLLRDFYL 58
            +YN MG I++ A+D+L  VT++T  IR ++S  +      ++   F P FVW LRDF L
Sbjct: 126 LVYNSMGTINQQAMDQLYYVTELTHRIRSKSSPDENENEDSADFVSFFPDFVWTLRDFSL 185

Query: 59  DLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENE 118
           DL  D + +TP +YLE +L+  QG+ +     N  R  IR  FP ++CF    P+ +  +
Sbjct: 186 DLEADGQPLTPDEYLEYSLKLTQGTSQKDKNFNLPRLCIRKFFPKKKCFVFDLPI-HRRK 244

Query: 119 LQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGITESYLDAINN 177
           L +L+++  + L PEF   +     ++F  ++ K + G   + GP L  +  +Y++AI+ 
Sbjct: 245 LAQLEKLQDEELDPEFVQQVADFCSYIFSNSKTKTLSGGIKVNGPRLESLVLTYINAISR 304

Query: 178 GAVPTISSSWQSVEEAECRRAYDSATETY 206
           G +P + ++  ++ + E   A   A   Y
Sbjct: 305 GDLPCMENAVLALAQIENSAAVQKAIAHY 333

Binds GTP, GDP and GMP.

Homo sapiens (taxid: 9606)

>sp|Q96PP9|GBP4_HUMAN Guanylate-binding protein 4 OS=Homo sapiens GN=GBP4 PE=1 SV=2

 Score =  119 bits (299), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 123/247 (49%), Gaps = 17/247 (6%)

Query: 2   FIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTP--------SELGQFSPIFVWLL 53
           F+YN +  I+  A+++L  VT++ + IR      K+ P        SE   F P F+W +
Sbjct: 141 FVYNSVSTINHQALEQLHYVTELAELIR-----AKSCPRPDEAEDSSEFASFFPDFIWTV 195

Query: 54  RDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPL 113
           RDF L+L  D   IT  +YLE AL+ + G    I   N  R+ IR  F  R+CF   RP 
Sbjct: 196 RDFTLELKLDGNPITEDEYLENALKLIPGKNPKIQNSNMPRECIRHFFRKRKCFVFDRPT 255

Query: 114 SNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGITESYL 172
           +++  L  +D++  + L   F    D    ++F   + K +    ++TG  L  +  +Y+
Sbjct: 256 NDKQYLNHMDEVPEENLERHFLMQSDNFCSYIFTHAKTKTLREGIIVTGKRLGTLVVTYV 315

Query: 173 DAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRS-KPPEEVA--LGEAHEAAV 229
           DAIN+GAVP + ++  ++ + E   A   A + Y     +  + P +    L + H A  
Sbjct: 316 DAINSGAVPCLENAVTALAQLENPAAVQRAADHYSQQMAQQLRLPTDTLQELLDVHAACE 375

Query: 230 QKALAVY 236
           ++A+AV+
Sbjct: 376 REAIAVF 382

Binds GTP, GDP and GMP. Hydrolyzes GTP very efficiently; GDP rather than GMP is the major reaction product. Plays a role in erythroid differentiation.

Homo sapiens (taxid: 9606)

>sp|Q9Z0E6|GBP2_MOUSE Interferon-induced guanylate-binding protein 2 OS=Mus musculus GN=Gbp2 PE=1 SV=1

 Score =  119 bits (298), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 113/209 (54%), Gaps = 5/209 (2%)

Query: 2   FIYNQMGGIDESAIDRLSLVTQMTKHIRIRAS---GGKTTPSELGQFSPIFVWLLRDFYL 58
           FIYN +G I++ A+D+L  VT++T  I+ ++S    G    +    F P FVW LRDF L
Sbjct: 126 FIYNSIGTINQQAMDQLHYVTELTDLIKSKSSPDQSGVDDSANFVGFFPTFVWTLRDFSL 185

Query: 59  DLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENE 118
           +L  + + +T  +YLE +L   +G+ +   + NE R  IR  FP R+CF   RP +   +
Sbjct: 186 ELEVNGKPVTSDEYLEHSLTLKKGADKKTKSFNEPRLCIRKFFPKRKCFIFDRP-AQRKQ 244

Query: 119 LQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGITESYLDAINN 177
           L +L+ +  + L  EF   +   T ++   +  K + G  ++ GP L  + ++Y+ AI+N
Sbjct: 245 LSKLETLREEELCGEFVEQVAEFTSYILSYSSVKTLCGGIIVNGPRLKSLVQTYVGAISN 304

Query: 178 GAVPTISSSWQSVEEAECRRAYDSATETY 206
           G++P + S+  ++ + E   A   A   Y
Sbjct: 305 GSLPCMESAVLTLAQIENSAAVQKAITHY 333

Binds GTP, GDP and GMP.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	910
224077052	1070	predicted protein [Populus trichocarpa]	0.997	0.848	0.746	0.0
255536707	1065	interferon-induced guanylate-binding pro	1.0	0.854	0.738	0.0
449433796	1062	PREDICTED: uncharacterized protein LOC10	0.996	0.854	0.731	0.0
356548658	1060	PREDICTED: uncharacterized protein LOC10	0.989	0.849	0.691	0.0
356521418	1060	PREDICTED: uncharacterized protein LOC10	0.989	0.849	0.689	0.0
356546617	1059	PREDICTED: uncharacterized protein LOC10	0.996	0.856	0.679	0.0
145358912	1082	Guanylate-binding protein [Arabidopsis t	0.983	0.827	0.651	0.0
9757727	1060	unnamed protein product [Arabidopsis tha	0.980	0.841	0.649	0.0
222632561	1062	hypothetical protein OsJ_19548 [Oryza sa	0.993	0.851	0.601	0.0
357128517	1066	PREDICTED: uncharacterized protein LOC10	0.990	0.845	0.589	0.0

>gi|224077052|ref|XP_002305110.1| predicted protein [Populus trichocarpa] gi|222848074|gb|EEE85621.1| predicted protein [Populus trichocarpa]

 Score = 1399 bits (3621), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 680/911 (74%), Positives = 797/911 (87%), Gaps = 3/911 (0%)

Query: 1    MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDL 60
            MFIYNQMGGIDE+A+DRLSLVTQMTKHIR+RASGG+++ SELGQFSPIFVWLLRDFYLDL
Sbjct: 162  MFIYNQMGGIDEAALDRLSLVTQMTKHIRVRASGGRSSASELGQFSPIFVWLLRDFYLDL 221

Query: 61   VEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQ 120
            VEDN++ITPRDYLE+ALRPVQGSG+DIAAKNEIRDSIRALFPDRECF LVRPL+NEN+LQ
Sbjct: 222  VEDNKRITPRDYLELALRPVQGSGKDIAAKNEIRDSIRALFPDRECFPLVRPLNNENDLQ 281

Query: 121  RLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAV 180
            R+DQISLD+LRPEFRAGLDALTKFVFERTRPKQVGATV+TGP+L+GITESYL+A+NNGAV
Sbjct: 282  RMDQISLDKLRPEFRAGLDALTKFVFERTRPKQVGATVMTGPILVGITESYLEALNNGAV 341

Query: 181  PTISSSWQSVEEAECRRAYDSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGA 240
            PTISSSWQSVEEAECRRAYD+ATE YMS+FDRSKPPEEV L E+H+ AVQK+LA +NA A
Sbjct: 342  PTISSSWQSVEEAECRRAYDTATEIYMSSFDRSKPPEEVFLRESHDEAVQKSLAAFNAAA 401

Query: 241  VGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSDASID 300
            VG+G ARKKYEGLLQKFFR+A ED+K+N +MEAD+RCS+AIQ+ME++LRAACH+SDA+ID
Sbjct: 402  VGIGSARKKYEGLLQKFFRRALEDYKRNAFMEADLRCSNAIQNMEKRLRAACHASDANID 461

Query: 301  NVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKY 360
            N+VKVLDGL+SEYETSCHGPGKWQKLA FLQQS EG ILDL KRL D+IGSE+SSLML+ 
Sbjct: 462  NIVKVLDGLLSEYETSCHGPGKWQKLAMFLQQSLEGSILDLAKRLNDKIGSEKSSLMLRC 521

Query: 361  RSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKS 420
             S+ED M LL KQLE SE+ KSEY+KRYD+AIN+KKKLADDY  RIN+LQ    SL E+ 
Sbjct: 522  HSMEDKMALLHKQLEASEKDKSEYMKRYDEAINEKKKLADDYMRRINDLQSNRGSLDERC 581

Query: 421  SSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQA 480
            SSL K ++S K E S+WKRK+DQVL+KQKA E+Q  SEI +LKSRS+A+EARLAAA EQ 
Sbjct: 582  SSLVKALESAKQETSNWKRKHDQVLSKQKADEEQAASEIAILKSRSSASEARLAAAHEQT 641

Query: 481  LSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEE 540
             SA+E+  EWKRKY +AVRE KAALEKAA VQERT+KE Q RED LREEFSS L  KE+E
Sbjct: 642  RSAEEDAAEWKRKYDIAVRETKAALEKAANVQERTNKETQLREDALREEFSSHLVVKEDE 701

Query: 541  MKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSF 600
            +KEK  +IE+AEQCLT L LELKAAESKM+SY  EISS KLE KEL EKLE  N KAQS+
Sbjct: 702  IKEKNRRIEYAEQCLTALNLELKAAESKMKSYGTEISSLKLEIKELVEKLETANTKAQSY 761

Query: 601  EREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGK 660
            ++EARI+EQ+K++LEQ+Y+SEFERF EVQERC  AEKE K+ATELAD+ RA+A +A+K K
Sbjct: 762  DKEARILEQEKIHLEQRYQSEFERFAEVQERCNHAEKECKRATELADKARADAVSAQKEK 821

Query: 661  SEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEERE 720
            +EF+ LAMER+A IER QR IESL+RQK +L  E+ R+R SEL+A+SKV+LLEARVEERE
Sbjct: 822  NEFQKLAMERLAQIERAQRHIESLDRQKNNLAGELERVRVSELDAVSKVSLLEARVEERE 881

Query: 721  KEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQEL 780
            KEIESLL+SNNE+RASTVK L+DLLE ER++ + AN  AE  SL+++ A+AKLD +QQE 
Sbjct: 882  KEIESLLKSNNEERASTVKALQDLLEDERKAHSVANKRAEDFSLQLEVARAKLDALQQEF 941

Query: 781  TKARLNETALGSKLRAVSHGKRARADDYEAGVGSVQEMDTNDKVLRANKRSRSTTSPLKY 840
            T  RLNE+AL +KL+A SHGKR R D+ E G GSVQ+  TND+  R NKRSRSTTSP+ +
Sbjct: 942  TSVRLNESALDNKLKAASHGKRFRTDNVEMGGGSVQDAVTNDR--RVNKRSRSTTSPVMF 999

Query: 841  TQPEDGGSVFRG-DDDNLSQQSNQEDYTKFTVQKLKQELTKHNFGAELLQLRNPNKKEIL 899
            TQPEDGGSVF+G DDDN SQQ+ QEDY KFT QKL+QELTKHNFGAELLQLRN NKK++L
Sbjct: 1000 TQPEDGGSVFKGDDDDNQSQQTGQEDYKKFTAQKLRQELTKHNFGAELLQLRNNNKKDVL 1059

Query: 900  ALYEKCILQKS 910
            ALYEKC+L+KS
Sbjct: 1060 ALYEKCVLRKS 1070

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536707|ref|XP_002509420.1| interferon-induced guanylate-binding protein, putative [Ricinus communis] gi|223549319|gb|EEF50807.1| interferon-induced guanylate-binding protein, putative [Ricinus communis]

 Score = 1382 bits (3576), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 672/910 (73%), Positives = 786/910 (86%)

Query: 1    MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDL 60
            MFI+NQMGGIDES+ID+LSLVTQ+TKHIR++ASGG+TT SELGQFSPIFVWLLRDFYLDL
Sbjct: 156  MFIFNQMGGIDESSIDQLSLVTQLTKHIRVKASGGRTTVSELGQFSPIFVWLLRDFYLDL 215

Query: 61   VEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQ 120
            VEDN+KITPRDYLEIALRPVQGSG DIAAKN IRDSIRALFPDRECF LVRP+  E +LQ
Sbjct: 216  VEDNKKITPRDYLEIALRPVQGSGGDIAAKNAIRDSIRALFPDRECFALVRPVPEERDLQ 275

Query: 121  RLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAV 180
            R+ Q+SLD LRPEFR+GLDALTKFVFERTRPKQVGAT++TGPVL+GITESYL+A+NNGAV
Sbjct: 276  RMGQLSLDNLRPEFRSGLDALTKFVFERTRPKQVGATIMTGPVLVGITESYLEALNNGAV 335

Query: 181  PTISSSWQSVEEAECRRAYDSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGA 240
            PTI SSWQSVEEAECR+AYD A E Y STF+RSK PEEVAL EAHE AV+K+L  +NA A
Sbjct: 336  PTICSSWQSVEEAECRKAYDIAMEVYRSTFNRSKLPEEVALREAHEEAVRKSLDAFNASA 395

Query: 241  VGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSDASID 300
            VG+G  RKKYEGLL K  +KAFED+K+  +MEAD+RCS+AIQ MERKLR ACHSSDA++D
Sbjct: 396  VGIGETRKKYEGLLHKELKKAFEDYKRITFMEADLRCSNAIQKMERKLRTACHSSDANVD 455

Query: 301  NVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKY 360
            N+VK+LDG +S+YETSCHGPGKWQKLA FLQQS EGPI DL KRL DQIGSE+SSLMLK 
Sbjct: 456  NIVKLLDGFLSDYETSCHGPGKWQKLAIFLQQSLEGPICDLAKRLNDQIGSEKSSLMLKC 515

Query: 361  RSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKS 420
            RSIED M LL KQLE SE++KSEY++RY++AIN+KKKLADDY  RI+++Q     L E+ 
Sbjct: 516  RSIEDKMTLLNKQLEASEKHKSEYMQRYNEAINEKKKLADDYMKRISDMQSSRSLLDERC 575

Query: 421  SSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQA 480
            SSL K ++S K E+SDWKRK+DQ+L+KQKA EDQ  SEI VLKSRS+A EARLAAA EQ 
Sbjct: 576  SSLVKALESAKQEMSDWKRKHDQLLSKQKADEDQTSSEIAVLKSRSSATEARLAAAHEQT 635

Query: 481  LSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEE 540
             SAQEE  EWKRKY + VRE KAALEKAAIVQERT KE Q RED LREEF S LAEKE E
Sbjct: 636  KSAQEEAAEWKRKYDITVRETKAALEKAAIVQERTGKETQLREDALREEFYSQLAEKERE 695

Query: 541  MKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSF 600
            +KEK  +IEHAEQCLTTL LELKAAESKM+S++ EISS KLE KE SEK E+ NAKAQS+
Sbjct: 696  IKEKNGRIEHAEQCLTTLNLELKAAESKMKSFDSEISSLKLEIKEWSEKFESANAKAQSY 755

Query: 601  EREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGK 660
            EREARI+EQ+K++LEQKY SEFERF EVQ+RC  AE E K+ATELAD+ RA+AA+A++ K
Sbjct: 756  EREARILEQEKIHLEQKYGSEFERFAEVQDRCHHAENECKRATELADKARADAASAQREK 815

Query: 661  SEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEERE 720
            SE + LAMER+A IER +R IESLER+K DL +EV+RIR +E+EA+S+VALLEARVEERE
Sbjct: 816  SELQKLAMERLAQIERAKRHIESLEREKNDLADEVDRIRITEMEAVSRVALLEARVEERE 875

Query: 721  KEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQEL 780
            KEIE LL+SNNE+RAS VK L++LL++ER++ + AN  AE  SL+++ A+AKLD +QQE 
Sbjct: 876  KEIELLLKSNNEERASNVKALKELLDAERKAHSVANKRAEDFSLQLEEARAKLDALQQEF 935

Query: 781  TKARLNETALGSKLRAVSHGKRARADDYEAGVGSVQEMDTNDKVLRANKRSRSTTSPLKY 840
            T  RLNE+AL +KL+A SHGKR R+DD E GVGSVQ+M TN++ LR +K+SRST+SPLKY
Sbjct: 936  TSVRLNESALDNKLKATSHGKRLRSDDVEMGVGSVQDMGTNNRSLRQSKKSRSTSSPLKY 995

Query: 841  TQPEDGGSVFRGDDDNLSQQSNQEDYTKFTVQKLKQELTKHNFGAELLQLRNPNKKEILA 900
            T PEDGGSVF GD+DN SQQ++QEDYTKFTVQKLKQELTKHNFGAELLQL+ PNKK+ILA
Sbjct: 996  THPEDGGSVFMGDEDNQSQQTDQEDYTKFTVQKLKQELTKHNFGAELLQLKTPNKKDILA 1055

Query: 901  LYEKCILQKS 910
            LYEKC+LQKS
Sbjct: 1056 LYEKCVLQKS 1065

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433796|ref|XP_004134683.1| PREDICTED: uncharacterized protein LOC101220489 [Cucumis sativus]

 Score = 1342 bits (3472), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 665/909 (73%), Positives = 802/909 (88%), Gaps = 2/909 (0%)

Query: 1    MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDL 60
            MF+YNQMGGIDE+A+DRLSLVTQMTKHIR+RA+GG+TT +ELGQFSPIFVWLLRDFYLDL
Sbjct: 154  MFVYNQMGGIDEAALDRLSLVTQMTKHIRVRAAGGRTTSAELGQFSPIFVWLLRDFYLDL 213

Query: 61   VEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQ 120
            VEDNR+ITPRDYLE+ALRPVQGSG+DIAAKNEIRDSIRALFPDR+CFTLVRPL+NEN+LQ
Sbjct: 214  VEDNRRITPRDYLELALRPVQGSGKDIAAKNEIRDSIRALFPDRDCFTLVRPLNNENDLQ 273

Query: 121  RLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAV 180
            RLDQISLD+LRPEFR+GLDA TKFVFERTRPKQVGATV+TGP+L+GITESYL+A+N+GAV
Sbjct: 274  RLDQISLDKLRPEFRSGLDAFTKFVFERTRPKQVGATVMTGPILVGITESYLNALNHGAV 333

Query: 181  PTISSSWQSVEEAECRRAYDSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGA 240
            PTI+SSWQSVEEAECRRAYD A E YMSTFDRSKPPEE AL EAHE AVQK+LA +N+ A
Sbjct: 334  PTITSSWQSVEEAECRRAYDHAAEVYMSTFDRSKPPEEAALREAHETAVQKSLAAFNSSA 393

Query: 241  VGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSDASID 300
            VGVG  RKKYEGLL+KF+RKAFED+K+N Y EAD++C++AIQSME++LR ACH+SDA+I+
Sbjct: 394  VGVGPVRKKYEGLLEKFYRKAFEDYKRNAYTEADLQCTNAIQSMEKRLRVACHASDANIN 453

Query: 301  NVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKY 360
            NVVKVL  L+SEYE S HGPGKWQKLATFL QS EGP+LDL+KRLIDQ+GSE++SL LK 
Sbjct: 454  NVVKVLGALLSEYEASSHGPGKWQKLATFLHQSLEGPVLDLIKRLIDQVGSEKNSLALKC 513

Query: 361  RSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKS 420
            RSIED +  LKKQLE SE+YKS+YLKRY+DAINDKKK+ADDY +RI NLQG+  SL E+ 
Sbjct: 514  RSIEDQLNFLKKQLEASEKYKSDYLKRYEDAINDKKKVADDYMNRITNLQGDCSSLDERC 573

Query: 421  SSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQA 480
            SSL KTV+  K E  DWKRKY+ VL+K KA EDQ  S+I +LKSRS+AAEARLAAAREQ+
Sbjct: 574  SSLKKTVEQAKQESLDWKRKYETVLSKLKAEEDQANSDIAILKSRSSAAEARLAAAREQS 633

Query: 481  LSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEE 540
             SAQEE EEWKRK+ +A+R+ KAALEKAA+ +ERT+K+ + RED LR+EFS+ L+ KE+E
Sbjct: 634  QSAQEEAEEWKRKFEIALRDTKAALEKAALAEERTNKQTRLREDDLRKEFSNILSVKEDE 693

Query: 541  MKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSF 600
            +K+KATKI+  E+ LTTL LELK AESK+ SY+VE+SS + E K+L E+LE  NAKAQSF
Sbjct: 694  LKDKATKIKQVEEHLTTLGLELKVAESKIGSYDVEVSSLRHEIKDLKERLETANAKAQSF 753

Query: 601  EREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGK 660
            E+EAR++ Q+KV+L+QKY SEF+RF+EVQERC+ AE EAKKATE+AD+ R EA+AA++GK
Sbjct: 754  EKEARMLLQEKVHLDQKYLSEFQRFDEVQERCRFAEHEAKKATEIADKARNEASAAQEGK 813

Query: 661  SEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEERE 720
            +E + LAMERMA IER +RQIE+LERQK DL  ++ RIRESE+EA+S+VA LE RVEERE
Sbjct: 814  NEMQRLAMERMAQIERAERQIENLERQKKDLVEDLQRIRESEMEAVSRVASLEGRVEERE 873

Query: 721  KEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQEL 780
            KEIESLL+SNNEQR STV+ L+ LL+SER + A AN  AE LSL++QSA AK+D +QQ+L
Sbjct: 874  KEIESLLKSNNEQRTSTVQVLQGLLDSERSAHAEANNRAEALSLQLQSAHAKIDLLQQQL 933

Query: 781  TKARLNETALGSKLRAVSHGKRARADDYEAGVGSVQEMDTNDKVLRANKRSRSTTSPLKY 840
            T+ RLNETAL  +L+  SHGKR RADD + G+ SVQ+MDT++++LR NKRSRST+SP+KY
Sbjct: 934  TEVRLNETALDGRLKTASHGKRPRADDGDMGMESVQDMDTSERILRVNKRSRSTSSPMKY 993

Query: 841  TQPEDGGSVFRGD-DDNLSQQSNQEDYTKFTVQKLKQELTKHNFGAELLQLRNPNKKEIL 899
            TQPEDGGS+F+GD D+N SQQ+NQ DYTKFTVQKLKQELTKHNFGAELLQL+NPNKK++L
Sbjct: 994  TQPEDGGSIFKGDEDNNHSQQTNQ-DYTKFTVQKLKQELTKHNFGAELLQLKNPNKKDVL 1052

Query: 900  ALYEKCILQ 908
            +LYEKC+L+
Sbjct: 1053 SLYEKCVLK 1061

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548658|ref|XP_003542717.1| PREDICTED: uncharacterized protein LOC100808644 [Glycine max]

 Score = 1258 bits (3255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 629/910 (69%), Positives = 765/910 (84%), Gaps = 10/910 (1%)

Query: 1    MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDL 60
            MFIYNQMGGIDE+++DRLSLVTQMTKHIR+RASGGKT+ SELGQFSPIFVWLLRDFYLDL
Sbjct: 161  MFIYNQMGGIDEASLDRLSLVTQMTKHIRVRASGGKTSASELGQFSPIFVWLLRDFYLDL 220

Query: 61   VEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQ 120
             EDNRKITPRDYLEIALRPVQGSG+DI AKNEIRDSIRALFPDRECFTLVRPL+NEN+LQ
Sbjct: 221  TEDNRKITPRDYLEIALRPVQGSGKDIKAKNEIRDSIRALFPDRECFTLVRPLNNENDLQ 280

Query: 121  RLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAV 180
            RLDQIS+D+LR  FR GLD+LTKFVFERTRPKQVGAT++TGPVL+GITESYL A+N GAV
Sbjct: 281  RLDQISMDKLRTGFREGLDSLTKFVFERTRPKQVGATMMTGPVLVGITESYLKALNEGAV 340

Query: 181  PTISSSWQSVEEAECRRAYDSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGA 240
            PTISSSWQSVEEAEC RAYDSAT+ YMS+FDRS PPEEVAL EAHE A QK++A +NA A
Sbjct: 341  PTISSSWQSVEEAECHRAYDSATDVYMSSFDRSTPPEEVALREAHEQAKQKSMAAFNAIA 400

Query: 241  VGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSDASID 300
            +GVG ARK YEGLL KFF+KAFED++K+ +MEAD++CS+AIQSME++LRAAC++SDA ID
Sbjct: 401  IGVGSARKTYEGLLLKFFKKAFEDYRKDAFMEADLQCSNAIQSMEKRLRAACNASDAKID 460

Query: 301  NVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKY 360
            NV KVLD L+SEYE +  GPGKWQ+LA FLQQS EGP+LDLVKRLI  I SE+ S  L+Y
Sbjct: 461  NVAKVLDALLSEYEKTIQGPGKWQRLAVFLQQSFEGPVLDLVKRLIATIESEKRSHALQY 520

Query: 361  RSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKS 420
            RSIE+ + LL K+LE +E  KS Y+KRY+DAINDKKKL D+Y +RI +LQ    SL E+ 
Sbjct: 521  RSIEEKVDLLTKRLEATEGEKSNYIKRYEDAINDKKKLMDEYKNRITDLQANRRSLDERY 580

Query: 421  SSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQA 480
            SSL KT+DS K +  DWKRKY+QVL++QKA EDQ  SEI  LKSRS AAEARLAAA+EQA
Sbjct: 581  SSLLKTLDSTKQDSMDWKRKYEQVLSRQKAEEDQASSEIAALKSRSGAAEARLAAAKEQA 640

Query: 481  LSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEE 540
             SAQEE EEWKRKY +A REA++AL+KAA VQERT+K+ Q RED LREEFS TLAEKE+E
Sbjct: 641  QSAQEEAEEWKRKYDIARREAQSALQKAANVQERTNKQTQLREDALREEFSGTLAEKEDE 700

Query: 541  MKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSF 600
            +KEK  KIEHAE+CLTTL LELKAAESK+RSY+ EISS ++E KEL+EKL+A NAKAQS+
Sbjct: 701  IKEKTAKIEHAEKCLTTLNLELKAAESKIRSYDTEISSLRIEIKELTEKLKAENAKAQSY 760

Query: 601  EREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGK 660
            EREA + +Q+K +LEQKY +EF+RF+EVQERCK AEKEA +ATE+AD+ RAEA  A+K +
Sbjct: 761  EREAIVFQQEKNHLEQKYHTEFKRFDEVQERCKTAEKEAARATEVADKARAEAGMAQKER 820

Query: 661  SEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEERE 720
            SE + LAMER+A IER +R+IE+L R+K +L  E+ R+R+SE +AL++   LE +V++RE
Sbjct: 821  SEMQRLAMERLAQIERAERRIENLGREKDNLEAELRRVRDSEKDALTRAVKLEEKVQQRE 880

Query: 721  KEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQEL 780
            K++E+LL+ +   R ++ + LE LLE+ER + A AN  AE LSL++QSAQAK+D + QEL
Sbjct: 881  KDLEALLDKDKTHRRNSAQILEQLLETEREAHAQANNRAEALSLQLQSAQAKIDSLHQEL 940

Query: 781  TKARLNETALGSKLRAVSHGKRARADDYEAGVGSVQEMDTNDKVLRANKRSRSTTSPLKY 840
            TK RLNETAL SKL   SHGKR R DD    +G   +MD + ++++  KR+RST     Y
Sbjct: 941  TKFRLNETALDSKLNTASHGKRMRVDD---NIGD--DMDVSPRIVKGTKRTRST-----Y 990

Query: 841  TQPEDGGSVFRGDDDNLSQQSNQEDYTKFTVQKLKQELTKHNFGAELLQLRNPNKKEILA 900
            +QPEDGGS+F G ++NLSQ++++EDY KFTVQ+LKQELTK N+G +LL+L+NPNKKEI+A
Sbjct: 991  SQPEDGGSIFEGAEENLSQRTSEEDYRKFTVQRLKQELTKLNYGDQLLRLKNPNKKEIIA 1050

Query: 901  LYEKCILQKS 910
            LYEKC+LQKS
Sbjct: 1051 LYEKCVLQKS 1060

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521418|ref|XP_003529353.1| PREDICTED: uncharacterized protein LOC100796442 [Glycine max]

 Score = 1254 bits (3246), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 627/910 (68%), Positives = 761/910 (83%), Gaps = 10/910 (1%)

Query: 1    MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDL 60
            MFIYNQMGGIDE+++DRLSLVTQMTKHIR+RASGGKT+ SELGQFSPIFVWLLRDFYLDL
Sbjct: 161  MFIYNQMGGIDEASLDRLSLVTQMTKHIRVRASGGKTSASELGQFSPIFVWLLRDFYLDL 220

Query: 61   VEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQ 120
             EDNRKITPRDYLEIALRPVQGSG+DI AKNEIRDSIRALFPDRECFTLVRPL+NEN+LQ
Sbjct: 221  TEDNRKITPRDYLEIALRPVQGSGKDIKAKNEIRDSIRALFPDRECFTLVRPLNNENDLQ 280

Query: 121  RLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAV 180
            RLDQIS+D+LR  FR GLDALTKFVFERTRPKQVGAT++TGPVL+GITESYL A+N GAV
Sbjct: 281  RLDQISMDKLRTGFREGLDALTKFVFERTRPKQVGATMMTGPVLVGITESYLKALNEGAV 340

Query: 181  PTISSSWQSVEEAECRRAYDSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGA 240
            PTISSSWQSVEEAEC RAYDSAT+ YMS+FDRS PPEEVAL EAHE A QK++A +NA A
Sbjct: 341  PTISSSWQSVEEAECHRAYDSATDVYMSSFDRSSPPEEVALREAHEQAKQKSMAAFNAIA 400

Query: 241  VGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSDASID 300
            +GVG ARK YE LL KFF+KAFED++K+ +MEAD++CS+AIQSME++LRAAC++SDA ID
Sbjct: 401  IGVGSARKTYEALLLKFFKKAFEDYRKDAFMEADLQCSNAIQSMEKRLRAACNASDAKID 460

Query: 301  NVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKY 360
            NV KVLD L+SEYE +  GPGKWQKLA FLQQS EGP+LDLVKRLI  + SE+ S  L+ 
Sbjct: 461  NVAKVLDALLSEYEKTIQGPGKWQKLAVFLQQSFEGPVLDLVKRLIATVESEKRSHALQC 520

Query: 361  RSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKS 420
            RSIE+ + LL K+LE +E  KS Y+KRY+DAINDKKKL D+Y + I +LQ    SL E+ 
Sbjct: 521  RSIEEKVDLLTKRLEATEGEKSNYIKRYEDAINDKKKLMDEYKNCITDLQANRRSLDERY 580

Query: 421  SSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQA 480
            SSL KT+DS K E  DWKRKY+QVL++QKA EDQ  SEI  LKSRS AAEARLAAA+EQA
Sbjct: 581  SSLLKTLDSTKQESMDWKRKYEQVLSRQKAEEDQASSEIAALKSRSGAAEARLAAAKEQA 640

Query: 481  LSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEE 540
             SAQEE EEWKRKY +A REA++AL+KAA VQERT+K+ Q RED LREEFS TLAEKE+E
Sbjct: 641  QSAQEEAEEWKRKYDIARREAQSALQKAANVQERTNKQTQLREDALREEFSGTLAEKEDE 700

Query: 541  MKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSF 600
            +KEK  KIEHAE+CLTTL LELKAAESK+RSY+ EISS ++E KEL+EKL+A NAKAQS+
Sbjct: 701  IKEKTAKIEHAEKCLTTLNLELKAAESKIRSYDTEISSLRIEIKELTEKLKAENAKAQSY 760

Query: 601  EREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGK 660
            EREA + +Q+K +LEQKY +EF+RF+EVQERCK AEKEA +ATE+AD+ RAEA  A+K +
Sbjct: 761  EREAIVFQQEKNHLEQKYHTEFKRFDEVQERCKTAEKEAARATEVADKARAEAGMAQKER 820

Query: 661  SEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEERE 720
            SE + LAMER+A IER +R+IE+L R+K +L  E+ R+R+SE +AL++   LE +V++RE
Sbjct: 821  SEMQRLAMERLAQIERAERRIENLGREKDNLEAELQRVRDSEKDALTRAVKLEEKVQQRE 880

Query: 721  KEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQEL 780
            K++E+LL+ +   R ++ + LE LLE+ER + A AN  AE LSL++QSAQAK+D + QEL
Sbjct: 881  KDLEALLDKDKTHRRNSAQILEQLLETEREAHAQANNRAEALSLQLQSAQAKIDSLHQEL 940

Query: 781  TKARLNETALGSKLRAVSHGKRARADDYEAGVGSVQEMDTNDKVLRANKRSRSTTSPLKY 840
            TK RLNETAL SKL   SHGKR R DD    +G   +MD + ++++  KR+RST     Y
Sbjct: 941  TKFRLNETALDSKLNTASHGKRMRVDD---NIGD--DMDVSPRIVKGTKRTRST-----Y 990

Query: 841  TQPEDGGSVFRGDDDNLSQQSNQEDYTKFTVQKLKQELTKHNFGAELLQLRNPNKKEILA 900
            TQPEDGGS+F G ++NLSQ+++++DY KFTVQ+LKQELTKHN G +LL+L+NPNKK+I+A
Sbjct: 991  TQPEDGGSIFEGAEENLSQRTSEDDYRKFTVQRLKQELTKHNHGDQLLRLKNPNKKDIIA 1050

Query: 901  LYEKCILQKS 910
            LYEKC+L KS
Sbjct: 1051 LYEKCVLHKS 1060

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546617|ref|XP_003541721.1| PREDICTED: uncharacterized protein LOC100776402 [Glycine max]

 Score = 1215 bits (3143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 618/910 (67%), Positives = 763/910 (83%), Gaps = 3/910 (0%)

Query: 1    MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDL 60
            MFIYNQMGGIDE+A+DRLSLVTQMTKHIR+RASGG+++ SELGQFSPIFVWLLRDFYLDL
Sbjct: 153  MFIYNQMGGIDEAALDRLSLVTQMTKHIRVRASGGRSSTSELGQFSPIFVWLLRDFYLDL 212

Query: 61   VEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQ 120
            VEDNRKITPRDYLEIALRP QGSG+DI AKNEIRDSIRALFPDRECFTLVRPL++EN+LQ
Sbjct: 213  VEDNRKITPRDYLEIALRPFQGSGKDITAKNEIRDSIRALFPDRECFTLVRPLNDENDLQ 272

Query: 121  RLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAV 180
            RLDQISL++LRPEFR+ LD LTKFVFER RPKQVGAT++TGPVLIGITESYLDA+N+GAV
Sbjct: 273  RLDQISLEKLRPEFRSSLDTLTKFVFERARPKQVGATMMTGPVLIGITESYLDALNHGAV 332

Query: 181  PTISSSWQSVEEAECRRAYDSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGA 240
            PTISSSWQSVEEAECR+AYDSA E YMS+FD +KPPEE AL EAHE AV+ ++A + A A
Sbjct: 333  PTISSSWQSVEEAECRKAYDSAAEIYMSSFDCTKPPEEAALREAHEKAVRISMAAFTASA 392

Query: 241  VGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSDASID 300
            VGVG  R KYEG+LQKF +KAFED+K+N YMEAD++CS+AIQSME++LRAAC++SDA ID
Sbjct: 393  VGVGSVRTKYEGMLQKFLKKAFEDYKRNAYMEADLQCSNAIQSMEKRLRAACNASDAKID 452

Query: 301  NVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKY 360
            NV KVLD L+ EYE S   P KWQKLA FLQQS EGP+LDL +RLI+++ S++SSL L Y
Sbjct: 453  NVAKVLDALLCEYEKSIQAPEKWQKLAVFLQQSFEGPVLDLTRRLINKVESDKSSLSLNY 512

Query: 361  RSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKS 420
            R  ED + LL K+LE SE  KSEY+KRY+DAINDKK+L D+Y +RI  L+    SL E+ 
Sbjct: 513  RLTEDKIALLNKRLETSESEKSEYIKRYEDAINDKKQLTDEYMNRITELRASCRSLDERY 572

Query: 421  SSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQA 480
            SSLSKT+DS K E  DWKRKY+QVL++ K+ EDQ  SEI  LKS S+AAEARLAAAREQ+
Sbjct: 573  SSLSKTLDSTKQESMDWKRKYEQVLSRHKSEEDQASSEIAALKSHSSAAEARLAAAREQS 632

Query: 481  LSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEE 540
             SAQEE EEWKRKY +AVREAKAALEKAAIVQE T+K+ Q RED LREEFSSTLAEKE++
Sbjct: 633  QSAQEEAEEWKRKYEIAVREAKAALEKAAIVQEYTNKQSQLREDALREEFSSTLAEKEDK 692

Query: 541  MKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSF 600
            +KEK  KIEHAEQCLTTL+LELKAAESK+R+YE EIS  +LE K+L E+L+  NA+AQS+
Sbjct: 693  IKEKTAKIEHAEQCLTTLKLELKAAESKIRNYESEISPLRLEIKKLIERLKTENARAQSY 752

Query: 601  EREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGK 660
            E++  +++Q+  +L++KY +E  +FEEVQERC++AEKEA +ATE+AD+ RAEA  A+K  
Sbjct: 753  EKDVMVIQQEINHLKEKYNTECIKFEEVQERCQIAEKEAVRATEVADKARAEANLAQKEM 812

Query: 661  SEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEERE 720
            SE + LA+ER+A IER +R+IE+LER+K +L  E+ R+R+SE +AL +V+ LE +V +RE
Sbjct: 813  SEMQRLAIERLAHIERAERKIENLEREKDNLEGELQRVRDSEKDALVRVSTLEEKVGQRE 872

Query: 721  KEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQEL 780
            K+I+SLLE +  QR ++ + L+ LLE+ER + A AN+ A+ LSL++QSAQAK+D + QEL
Sbjct: 873  KDIDSLLEKDGTQRRNSTQILDQLLETEREACAQANSRADSLSLQLQSAQAKIDSLHQEL 932

Query: 781  TKARLNETALGSKLRAVSHGKRARADDYEAGVGSVQEMDTNDKVLRANKRSRSTTSPLKY 840
            TK +LNET L S+L+  S GKR R DD   GV S Q+MD++ ++LR  KRS+ST+SPLK+
Sbjct: 933  TKFQLNETILDSELKTASRGKRLRVDDI--GVESGQDMDSSPRILRGTKRSKSTSSPLKF 990

Query: 841  TQPEDGGSVFRGDDDNLSQQSNQEDYTKFTVQKLKQELTKHNFGAELLQLRNPNKKEILA 900
            +  ED  S+  GD+DN SQQ+N++DY KFT+QKLKQELTKHN+G +LL+L+NPNKK ILA
Sbjct: 991  SHLEDVSSI-GGDEDNYSQQTNEDDYKKFTIQKLKQELTKHNYGDQLLELKNPNKKAILA 1049

Query: 901  LYEKCILQKS 910
            LYEKC+LQKS
Sbjct: 1050 LYEKCVLQKS 1059

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145358912|ref|NP_199419.2| Guanylate-binding protein [Arabidopsis thaliana] gi|332007951|gb|AED95334.1| Guanylate-binding protein [Arabidopsis thaliana]

 Score = 1192 bits (3084), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 599/919 (65%), Positives = 740/919 (80%), Gaps = 24/919 (2%)

Query: 1    MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDL 60
            MF+YNQMGGIDE+++DRLSLVTQMTKHIR++ASGG ++ SELGQFSPIFVWLLRDFYLDL
Sbjct: 160  MFVYNQMGGIDEASLDRLSLVTQMTKHIRVKASGGTSSRSELGQFSPIFVWLLRDFYLDL 219

Query: 61   VEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQ 120
            VEDNRKI+PRDYLEIALRPVQGSG DI AKNEIRDSIRALFPDRECFTLVRPL+NE +LQ
Sbjct: 220  VEDNRKISPRDYLEIALRPVQGSGGDIGAKNEIRDSIRALFPDRECFTLVRPLNNEKDLQ 279

Query: 121  RLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAV 180
            RLDQISL++LRPEF AGLDA TKFVFE+TRPKQ+G TV+TGP+L+GIT+SYLDA+NNGAV
Sbjct: 280  RLDQISLEKLRPEFGAGLDAFTKFVFEKTRPKQLGGTVMTGPILVGITQSYLDALNNGAV 339

Query: 181  PTISSSWQSVEEAECRRAYDSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGA 240
            PTI+SSWQSVEE ECRRAYDS  E YM+ FD+SK PEE AL E HE AV+KALA++N+ A
Sbjct: 340  PTITSSWQSVEETECRRAYDSGVEAYMAAFDQSKAPEEGALREEHEEAVRKALAIFNSNA 399

Query: 241  VGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSDASID 300
            VG G ARKK+E LL K  +K FED+KKN +MEAD+RC+S IQ ME++LRAACH+S+A++D
Sbjct: 400  VGNGSARKKFEDLLHKDLKKKFEDYKKNAFMEADLRCTSTIQRMEKQLRAACHASNANMD 459

Query: 301  NVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKY 360
            NVVKVL+  ++EYE SCHGPGKWQKL+ FLQQS EGPI DL KRLID I  E++SL +K+
Sbjct: 460  NVVKVLEARLAEYEASCHGPGKWQKLSVFLQQSLEGPIYDLTKRLIDSIAIEKNSLAMKF 519

Query: 361  RSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKS 420
            RS+ED MK LK+QL+DSERYK EY KRYD++ NDKKKL D Y  RI  LQGEN SL E+ 
Sbjct: 520  RSVEDAMKHLKQQLDDSERYKLEYQKRYDESNNDKKKLEDIYRERITKLQGENSSLNERC 579

Query: 421  SSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQA 480
            S+L KTV+S K EI +W R YDQ++ KQKA+++Q+ SE+EVL++RST +EAR+AAAREQA
Sbjct: 580  STLVKTVESKKEEIKEWIRNYDQIVLKQKAVQEQLSSEMEVLRTRSTTSEARVAAAREQA 639

Query: 481  LSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEE 540
             SA EE +EWKRKY  AV EA++AL+KAA VQER+ KE Q RED LREEFS TLA K+EE
Sbjct: 640  KSAAEETKEWKRKYDYAVGEARSALQKAASVQERSGKETQLREDALREEFSITLANKDEE 699

Query: 541  MKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSF 600
            + EKATK+E AEQ LT LR +LK AESK+ S+EVE++S +L   E+++KL++ N KA ++
Sbjct: 700  ITEKATKLEKAEQSLTVLRSDLKVAESKLESFEVELASLRLTLSEMTDKLDSANKKALAY 759

Query: 601  EREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGK 660
            E+EA  +EQ+K+ +EQKY+SEF+RF+EV+ERCK AE EAK+ATELAD+ R +A  ++K K
Sbjct: 760  EKEANKLEQEKIRMEQKYRSEFQRFDEVKERCKAAEIEAKRATELADKARTDAVTSQKEK 819

Query: 661  SEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEERE 720
            SE + LAMER+A IER +RQ+E+LERQKTDL +E++R+R SE+EA+SKV +LEARVEERE
Sbjct: 820  SESQRLAMERLAQIERAERQVENLERQKTDLEDELDRLRVSEMEAVSKVTILEARVEERE 879

Query: 721  KEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQEL 780
            KEI SL++  N QRA  VK LE LL+ ER++  AAN  AE LSLE+Q+AQA +D +QQEL
Sbjct: 880  KEIGSLIKETNAQRAHNVKSLEKLLDEERKAHIAANRRAEALSLELQAAQAHVDNLQQEL 939

Query: 781  TKARLNETALGSKLRAV--SHGKRARADDYEAGVGSVQEMDT---NDKVLRANKRSRSTT 835
             +ARL ETAL +K+RA   SHGKR+R +D       V +MD    +D++LR NKR+RS  
Sbjct: 940  AQARLKETALDNKIRAASSSHGKRSRFED-------VVDMDIGEGSDRILRTNKRARS-- 990

Query: 836  SPLKYTQPEDGGSVFRGDDDNLSQQSN-----QEDYTKFTVQKLKQELTKHNFGAELLQL 890
                 T+ +D G    GD+D  S Q N     +EDY K TVQ LK ELTK++ G  LL  
Sbjct: 991  -----TRGDDHGPTDEGDEDFQSHQDNGEEEEEEDYRKLTVQNLKHELTKYDCGHLLLNR 1045

Query: 891  RNPNKKEILALYEKCILQK 909
             + NKKEILALYE  +L K
Sbjct: 1046 GHQNKKEILALYEAHVLPK 1064

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9757727|dbj|BAB08252.1| unnamed protein product [Arabidopsis thaliana]

 Score = 1179 bits (3050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 596/917 (64%), Positives = 737/917 (80%), Gaps = 25/917 (2%)

Query: 4    YNQ-MGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVE 62
            Y+Q MGGIDE+++DRLSLVTQMTKHIR++ASGG ++ SELGQFSPIFVWLLRDFYLDLVE
Sbjct: 140  YDQTMGGIDEASLDRLSLVTQMTKHIRVKASGGTSSRSELGQFSPIFVWLLRDFYLDLVE 199

Query: 63   DNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRL 122
            DNRKI+PRDYLEIALRPVQGSG DI AKNEIRDSIRALFPDRECFTLVRPL+NE +LQRL
Sbjct: 200  DNRKISPRDYLEIALRPVQGSGGDIGAKNEIRDSIRALFPDRECFTLVRPLNNEKDLQRL 259

Query: 123  DQISLDRLRPEFRAGLDALTKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAVPT 182
            DQISL++LRPEF AGLDA TKFVFE+TRPKQ+G TV+TGP+L+GIT+SYLDA+NNGAVPT
Sbjct: 260  DQISLEKLRPEFGAGLDAFTKFVFEKTRPKQLGGTVMTGPILVGITQSYLDALNNGAVPT 319

Query: 183  ISSSWQSVEEAECRRAYDSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGAVG 242
            I+SSWQSVEE ECRRAYDS  E YM+ FD+SK PEE AL E HE AV+KALA++N+ AVG
Sbjct: 320  ITSSWQSVEETECRRAYDSGVEAYMAAFDQSKAPEEGALREEHEEAVRKALAIFNSNAVG 379

Query: 243  VGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSDASIDNV 302
             G ARKK+E LL K  +K FED+KKN +MEAD+RC+S IQ ME++LRAACH+S+A++DNV
Sbjct: 380  NGSARKKFEDLLHKDLKKKFEDYKKNAFMEADLRCTSTIQRMEKQLRAACHASNANMDNV 439

Query: 303  VKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRS 362
            VKVL+  ++EYE SCHGPGKWQKL+ FLQQS EGPI DL KRLID I  E++SL +K+RS
Sbjct: 440  VKVLEARLAEYEASCHGPGKWQKLSVFLQQSLEGPIYDLTKRLIDSIAIEKNSLAMKFRS 499

Query: 363  IEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSS 422
            +ED MK LK+QL+DSERYK EY KRYD++ NDKKKL D Y  RI  LQGEN SL E+ S+
Sbjct: 500  VEDAMKHLKQQLDDSERYKLEYQKRYDESNNDKKKLEDIYRERITKLQGENSSLNERCST 559

Query: 423  LSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALS 482
            L KTV+S K EI +W R YDQ++ KQKA+++Q+ SE+EVL++RST +EAR+AAAREQA S
Sbjct: 560  LVKTVESKKEEIKEWIRNYDQIVLKQKAVQEQLSSEMEVLRTRSTTSEARVAAAREQAKS 619

Query: 483  AQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMK 542
            A EE +EWKRKY  AV EA++AL+KAA VQER+ KE Q RED LREEFS TLA K+EE+ 
Sbjct: 620  AAEETKEWKRKYDYAVGEARSALQKAASVQERSGKETQLREDALREEFSITLANKDEEIT 679

Query: 543  EKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFER 602
            EKATK+E AEQ LT LR +LK AESK+ S+EVE++S +L   E+++KL++ N KA ++E+
Sbjct: 680  EKATKLEKAEQSLTVLRSDLKVAESKLESFEVELASLRLTLSEMTDKLDSANKKALAYEK 739

Query: 603  EARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSE 662
            EA  +EQ+K+ +EQKY+SEF+RF+EV+ERCK AE EAK+ATELAD+ R +A  ++K KSE
Sbjct: 740  EANKLEQEKIRMEQKYRSEFQRFDEVKERCKAAEIEAKRATELADKARTDAVTSQKEKSE 799

Query: 663  FENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKE 722
             + LAMER+A IER +RQ+E+LERQKTDL +E++R+R SE+EA+SKV +LEARVEEREKE
Sbjct: 800  SQRLAMERLAQIERAERQVENLERQKTDLEDELDRLRVSEMEAVSKVTILEARVEEREKE 859

Query: 723  IESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTK 782
            I SL++  N QRA  VK LE LL+ ER++  AAN  AE LSLE+Q+AQA +D +QQEL +
Sbjct: 860  IGSLIKETNAQRAHNVKSLEKLLDEERKAHIAANRRAEALSLELQAAQAHVDNLQQELAQ 919

Query: 783  ARLNETALGSKLRAV--SHGKRARADDYEAGVGSVQEMDT---NDKVLRANKRSRSTTSP 837
            ARL ETAL +K+RA   SHGKR+R +D       V +MD    +D++LR NKR+RS    
Sbjct: 920  ARLKETALDNKIRAASSSHGKRSRFED-------VVDMDIGEGSDRILRTNKRARS---- 968

Query: 838  LKYTQPEDGGSVFRGDDDNLSQQSN-----QEDYTKFTVQKLKQELTKHNFGAELLQLRN 892
               T+ +D G    GD+D  S Q N     +EDY K TVQ LK ELTK++ G  LL   +
Sbjct: 969  ---TRGDDHGPTDEGDEDFQSHQDNGEEEEEEDYRKLTVQNLKHELTKYDCGHLLLNRGH 1025

Query: 893  PNKKEILALYEKCILQK 909
             NKKEILALYE  +L K
Sbjct: 1026 QNKKEILALYEAHVLPK 1042

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222632561|gb|EEE64693.1| hypothetical protein OsJ_19548 [Oryza sativa Japonica Group]

 Score = 1097 bits (2837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/914 (60%), Positives = 717/914 (78%), Gaps = 10/914 (1%)

Query: 1    MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDL 60
            MFIYNQMGGIDE+A+DRLSLVT+MTKHIR+RASGG++T SELG FSP+FVWLLRDFYLDL
Sbjct: 154  MFIYNQMGGIDEAALDRLSLVTEMTKHIRVRASGGRSTASELGHFSPVFVWLLRDFYLDL 213

Query: 61   VEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQ 120
             EDNRKITPRDYLE+ALRPVQG GRD+++KN IR+SIRALFPDREC TLVRP++NE +LQ
Sbjct: 214  TEDNRKITPRDYLELALRPVQGGGRDVSSKNAIRESIRALFPDRECITLVRPVNNEKDLQ 273

Query: 121  RLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAV 180
            RLDQ+ L+  RPEFR+GLDALTKFVF+RTRPKQ+GA+ LTGPVL G+T+S+LDAIN GAV
Sbjct: 274  RLDQLPLNNFRPEFRSGLDALTKFVFDRTRPKQLGASTLTGPVLSGLTQSFLDAINTGAV 333

Query: 181  PTISSSWQSVEEAECRRAYDSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGA 240
            PTISSSWQSVEEAECRRAYDSA +TY S+FDR KP EE A+ EAHE A++KA++V+NA A
Sbjct: 334  PTISSSWQSVEEAECRRAYDSAIDTYNSSFDRRKPAEEDAMREAHEDALKKAVSVFNASA 393

Query: 241  VGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSDASID 300
            VG GLAR K+E LLQ   +KAFED+K+N ++EAD++CS+ IQSME K+R AC+  DA +D
Sbjct: 394  VGAGLARSKFEKLLQTSLKKAFEDYKRNTFLEADLQCSNRIQSMESKIRTACNRPDAKLD 453

Query: 301  NVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKY 360
            ++V+++DGL++EYE+  +GPGKW+KLATFLQQ   GP+L L +R I+ I +ER+SL LK 
Sbjct: 454  DIVRLIDGLLTEYESKSYGPGKWKKLATFLQQCLAGPVLYLFRRQIEHIDAERNSLRLKC 513

Query: 361  RSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKS 420
             S +D + LL+KQLE SE +++EYL+RY+++INDK+K++ DY+ RI  LQ ++  L E+ 
Sbjct: 514  SSNDDKLALLRKQLEASEGHRAEYLRRYEESINDKQKISRDYSGRIAELQTKSSKLEERC 573

Query: 421  SSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQA 480
             SLS  +D+ K E  DWK KYD  L +QKA E ++ S+I  L+SR   +E RL+A REQA
Sbjct: 574  VSLSSALDNAKRESVDWKNKYDHNLLQQKADESKLKSQIASLESRVNISEGRLSAVREQA 633

Query: 481  LSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEE 540
             SAQEE  EWKRKY VAV EAK AL++AA+ QERT+K++Q+RED LR E +S L+EKEEE
Sbjct: 634  ESAQEEASEWKRKYEVAVSEAKTALQRAAVAQERTNKKVQEREDALRAELASQLSEKEEE 693

Query: 541  MKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSF 600
            +    TKI   E   T L   L+A E+K++++E +  + K E + L+  LE+   +AQS 
Sbjct: 694  IARLNTKINQTEIHATNLISRLEATEAKLKNHESDSLALKEEIRSLTVSLESFRTEAQSR 753

Query: 601  EREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGK 660
            E+E +I+EQ+K +L++KY +E +RF+E   RCK AE+EAK+ATELAD  RAEA A++K K
Sbjct: 754  EKEVKILEQEKNHLQEKYLTECKRFDEADSRCKEAEREAKRATELADVARAEAVASQKDK 813

Query: 661  SEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEERE 720
             E + LAMER+A+IER++RQ+E LER+K  +  E+ R+ +SE +A+ KV+ LE RV+ERE
Sbjct: 814  GEAQRLAMERLALIERMERQVEGLEREKNKMLEEIERVGQSEKDAVCKVSSLEQRVDERE 873

Query: 721  KEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQEL 780
            KEI+ +++ +N+QR+STV+ LE LLE+ER + A AN  AE LSL++Q+ Q+KLD +QQEL
Sbjct: 874  KEIDEMMQRSNQQRSSTVQVLESLLETEREACAEANRRAEALSLQLQATQSKLDMLQQEL 933

Query: 781  TKARLNETALGSKLRAVSHGKRARADDYEAGVGSVQEMDT-NDKVLRANKRSRSTTSPLK 839
            T  R NETAL SKL+A SH +R R +  E    SV +MD  +D   R  KRS+STTSP K
Sbjct: 934  TSVRFNETALDSKLKA-SHARRLRGEATE----SVHDMDIDDDNTGRRRKRSKSTTSPFK 988

Query: 840  YTQPEDGGSVFRGDD-DNLSQQSNQ---EDYTKFTVQKLKQELTKHNFGAELLQLRNPNK 895
                EDGGSVF G+D +N SQQ+ +   EDYTKFTV KLKQELTKH FGA+LLQL+NPNK
Sbjct: 989  SNHTEDGGSVFVGEDTNNGSQQAQETETEDYTKFTVLKLKQELTKHGFGAQLLQLKNPNK 1048

Query: 896  KEILALYEKCILQK 909
            K+I+ALYEK ++ K
Sbjct: 1049 KDIVALYEKHVVGK 1062

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357128517|ref|XP_003565919.1| PREDICTED: uncharacterized protein LOC100834701 [Brachypodium distachyon]

 Score = 1071 bits (2771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/912 (58%), Positives = 709/912 (77%), Gaps = 11/912 (1%)

Query: 1    MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDL 60
            MFIYNQMGGIDE++IDRLSLVT+MTKHIR+RASGG++T SELG FSP+FVWLLRDFYLDL
Sbjct: 159  MFIYNQMGGIDEASIDRLSLVTEMTKHIRVRASGGRSTASELGHFSPVFVWLLRDFYLDL 218

Query: 61   VEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQ 120
             EDNRKITPRDYLE+ALR VQG GRD++AKN IR+SIRALFPDRECFTLVRP++NE +LQ
Sbjct: 219  AEDNRKITPRDYLELALRSVQGGGRDVSAKNAIRESIRALFPDRECFTLVRPVNNEKDLQ 278

Query: 121  RLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAV 180
            RLDQ+ L+  RPEF++GLDA TKFVF+RTRPKQ+GA+ +TGP+L G+T+S+LDAIN GAV
Sbjct: 279  RLDQLDLNTFRPEFKSGLDAFTKFVFDRTRPKQLGASTMTGPILAGLTQSFLDAINTGAV 338

Query: 181  PTISSSWQSVEEAECRRAYDSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGA 240
            PTISSSWQSVEE ECRRAYDSA +TY S+F++ K  EE AL EAHEAAV KA+ V+NA A
Sbjct: 339  PTISSSWQSVEETECRRAYDSALDTYRSSFNQKKSVEEDALREAHEAAVNKAINVFNASA 398

Query: 241  VGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSDASID 300
            VG G AR K+E LLQ   RK FED+K+N Y+EAD++C++ IQ+ME K+RAAC   D+ +D
Sbjct: 399  VGAGSARSKFEKLLQTSLRKIFEDYKRNTYLEADLQCTNRIQNMESKVRAACSRPDSKLD 458

Query: 301  NVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKY 360
            +VV++LDGL +EYE++ +GP KW KLATFLQQ   GP+L+L ++ ++ I +ER SL LK 
Sbjct: 459  DVVRLLDGLATEYESTSYGPKKWTKLATFLQQCLAGPVLELFRKQLEHIDAERKSLRLKC 518

Query: 361  RSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKS 420
             S +D + LL+KQLE SE +++EYLKRY+++INDK+K++ DY++R+  LQ +   L E+ 
Sbjct: 519  NSSDDKLALLRKQLEASEGHRAEYLKRYEESINDKQKISKDYSARLAELQNKGSKLEERC 578

Query: 421  SSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQA 480
             SLS  ++  K E  DWK KYD  + +QK  E ++ S+I  L+SR+  +E RL+A REQA
Sbjct: 579  LSLSSALEHAKRESVDWKSKYDNSILQQKEEESKLRSQIASLESRANISEGRLSAVREQA 638

Query: 481  LSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEE 540
             SAQEE  EWKRK   A  EAK AL++AA+ QERT+K++Q+RED LR E +S L+EK+EE
Sbjct: 639  ESAQEEASEWKRKCEYASSEAKTALQRAAVAQERTNKKVQEREDALRAELASQLSEKDEE 698

Query: 541  MKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSF 600
            +   +TKI   E   T+L   L+ AE+K+++YE +  + K + + L+E LE++  +AQS 
Sbjct: 699  IARLSTKINQTEVHATSLISRLEVAEAKVKNYESDSVTLKEQIRLLTENLESIKTEAQSR 758

Query: 601  EREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGK 660
            E+E +I+EQ+K +L++K+ SE +RF+E   RCK AE+EAK+A ELAD  R EAAAA++ K
Sbjct: 759  EKEVKILEQEKNHLQEKFLSECKRFDETDRRCKEAEREAKRAVELADLARVEAAAAQRDK 818

Query: 661  SEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEERE 720
             E + LAMER+A+IER++RQ+ESLER+K  +  E+ R+ +SEL+ALSKV +L+ RV+ERE
Sbjct: 819  GEAQRLAMERLALIERMERQVESLEREKNKMVEEMERLHQSELDALSKVTMLDERVDERE 878

Query: 721  KEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQEL 780
            K+I  +LE NN+QR+STV+ LE LLE+ER + A AN  AE LSL++Q+ Q KLD +QQEL
Sbjct: 879  KQIGEMLEQNNQQRSSTVQVLEHLLETEREACAEANKRAEALSLQLQATQGKLDMLQQEL 938

Query: 781  TKARLNETALGSKLRAVSHGKRARADDYEAGVGSVQEMDT-NDKVLRANKRSRSTTSPLK 839
            T  RLNETAL SK++A S+ +R R +    G  SV +MD  +D   R  KR++STTSP K
Sbjct: 939  TSVRLNETALDSKVKA-SYSRRLRGE----GTESVHDMDIDDDNNGRRRKRTKSTTSPFK 993

Query: 840  YTQPEDGGSVFRGDD-DNLSQQ---SNQEDYTKFTVQKLKQELTKHNFGAELLQLRNPNK 895
            +   EDGGSVF G+D +N SQQ   +  EDYTKFTV KLKQELTKH FGA+LLQL+NPNK
Sbjct: 994  H-HTEDGGSVFIGEDTNNGSQQVEETETEDYTKFTVLKLKQELTKHGFGAQLLQLKNPNK 1052

Query: 896  KEILALYEKCIL 907
            K+I+ALYEK ++
Sbjct: 1053 KDIVALYEKHVV 1064

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.5	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00040459 hypothetical protein (1070 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	910
pfam02263	264	pfam02263, GBP, Guanylate-binding protein, N-termi	2e-30
pfam02841	297	pfam02841, GBP_C, Guanylate-binding protein, C-ter	1e-21
cd01851	224	cd01851, GBP, Guanylate-binding protein (GBP) fami	3e-21
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-15
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-14
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-14
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-12
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-11
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-11
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-10
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-10
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	3e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-10
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-09
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	4e-09
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-09
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-08
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	9e-08
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	1e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-07
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	4e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-06
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-06
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	2e-06
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	2e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	6e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	8e-06
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	8e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-05
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	2e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-05
pfam05557	722	pfam05557, MAD, Mitotic checkpoint protein	3e-05
pfam05701	484	pfam05701, DUF827, Plant protein of unknown functi	5e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	6e-05
pfam13514	1118	pfam13514, AAA_27, AAA domain	6e-05
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	6e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	9e-05
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	9e-05
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	1e-04
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	3e-04
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	4e-04
pfam06548	488	pfam06548, Kinesin-related, Kinesin-related	4e-04
PHA02562	562	PHA02562, 46, endonuclease subunit; Provisional	4e-04
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	8e-04
pfam07888	546	pfam07888, CALCOCO1, Calcium binding and coiled-co	8e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	9e-04
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	0.001
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	0.001
PRK05771	646	PRK05771, PRK05771, V-type ATP synthase subunit I;	0.001
TIGR03185	650	TIGR03185, DNA_S_dndD, DNA sulfur modification pro	0.001
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.001
COG3264	835	COG3264, COG3264, Small-conductance mechanosensiti	0.001
pfam13514	1118	pfam13514, AAA_27, AAA domain	0.002
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.002
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	0.002
TIGR01843	423	TIGR01843, type_I_hlyD, type I secretion membrane	0.002
PLN03229	762	PLN03229, PLN03229, acetyl-coenzyme A carboxylase	0.003
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	0.003
pfam09726	680	pfam09726, Macoilin, Transmembrane protein	0.003
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.004
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	0.004
pfam07888	546	pfam07888, CALCOCO1, Calcium binding and coiled-co	0.004
PRK12705	508	PRK12705, PRK12705, hypothetical protein; Provisio	0.004

>gnl|CDD|111185 pfam02263, GBP, Guanylate-binding protein, N-terminal domain

 Score =  120 bits (304), Expect = 2e-30
 Identities = 53/149 (35%), Positives = 79/149 (53%), Gaps = 3/149 (2%)

Query: 2   FIYNQMGGIDESAIDRLSLVTQMTKHIRIRAS---GGKTTPSELGQFSPIFVWLLRDFYL 58
           F+YN    I++ A+ +L LVT++T+ IR ++S   G     +E   F P FVW +RDF L
Sbjct: 109 FVYNSSQTINQQALQQLHLVTELTELIRAKSSPRYGRVADSAEFVSFFPDFVWTVRDFSL 168

Query: 59  DLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENE 118
            L  D   IT  +YLE  L+  QG   ++   N  R+ IR+ FP R+CF   RP  +   
Sbjct: 169 PLELDGGPITGDEYLENRLKLSQGQHEELQNFNLPRECIRSFFPKRKCFLFDRPGLDVAL 228

Query: 119 LQRLDQISLDRLRPEFRAGLDALTKFVFE 147
             +L+ +  D L PEF+  L     ++F 
Sbjct: 229 NPQLEGLREDELDPEFQQQLREFCSYIFS 257

Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP. Length = 264

>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain

 Score = 96.2 bits (240), Expect = 1e-21
 Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 12/185 (6%)

Query: 155 GATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFD-RS 213
           G   +TGP L  + ++Y+DAIN+GAVP + ++  ++ + E   A   A   Y      + 
Sbjct: 1   GGITVTGPRLGSLVQTYVDAINSGAVPCLENAVLALAQIENSAAVQKAIAHYEQQMAQKV 60

Query: 214 KPPEEV--ALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYM 271
           K P E    L + H    ++A+AV+   +       ++++  L +   K  +D  K    
Sbjct: 61  KLPTETLQELLDLHRDCEKEAIAVFMKRSFKD--ENQEFQKELVELLEKKKDDFLKQNEE 118

Query: 272 EADIRCSSAIQS----MERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLA 327
            +   CS+ +Q     +E K+     S        ++  D L ++Y      P K  K  
Sbjct: 119 ASSKYCSALLQDLSEPLEEKISQGTFSKPGGYKLFLEERDKLEAKYNQV---PRKGVKAE 175

Query: 328 TFLQQ 332
             LQ+
Sbjct: 176 EVLQE 180

Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP. Length = 297

>gnl|CDD|206650 cd01851, GBP, Guanylate-binding protein (GBP) family (N-terminal domain)

 Score = 93.2 bits (232), Expect = 3e-21
 Identities = 36/146 (24%), Positives = 52/146 (35%), Gaps = 19/146 (13%)

Query: 3   IYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVE 62
           IYN    I    +D+L  + +         + G        +  P+ ++++RDF      
Sbjct: 98  IYNMWQTILGDDLDKLMGLLKTAL-----ETLGLAGLHNFSKPKPLLLFVVRDFTGPTPL 152

Query: 63  DNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRL 122
           +   +T            + S   I   N+I  SIR  F    CF L  P      LQ  
Sbjct: 153 EGLDVT------------EKSETLIEELNKIWSSIRKPFTPITCFVLPHPGLLHKLLQN- 199

Query: 123 DQISLDRLRPEFRAGLDALTKFVFER 148
               L  L PEFR  L AL +  F  
Sbjct: 200 -DGRLKDLPPEFRKALKALRQRFFSS 224

Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein (GAP) cannot approach. Length = 224

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 79.8 bits (197), Expect = 4e-15
 Identities = 77/345 (22%), Positives = 160/345 (46%), Gaps = 20/345 (5%)

Query: 446 TKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAAL 505
             QK    ++  E+  L+++    E  L + + +  S ++ +EE +R+     R+ +   
Sbjct: 663 LAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELK 722

Query: 506 EKAAIVQERTSKEMQQREDV--LREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELK 563
            + A ++E   +   + E++    EE    L E +E ++E   ++E  E+ L  L+ E++
Sbjct: 723 RELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIE 782

Query: 564 AAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFE 623
             E K ++        + E +EL E+LE    +  + ERE   +EQ +  LEQ+ +   E
Sbjct: 783 ELEEKRQA-------LQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEE 835

Query: 624 RFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIES 683
             EE++E+    E+E ++  +  +  + E       K E E+        ++ ++ + E 
Sbjct: 836 EIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDE-------LKELEEEKEE 888

Query: 684 LERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRAST----VK 739
           LE +  +L +E+  ++E   +   ++  LEA++E  E E+  L E   E+   T    ++
Sbjct: 889 LEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELE 948

Query: 740 KLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKAR 784
           +  + LE E  +    N  A     EV+    +L   +++L +A+
Sbjct: 949 REIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAK 993

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 76.3 bits (188), Expect = 5e-14
 Identities = 82/345 (23%), Positives = 152/345 (44%), Gaps = 22/345 (6%)

Query: 412 ENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEA 471
           E   L E+ + L   ++ L+ E+   K +   +    + +  Q+  E+E          A
Sbjct: 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQL-EELERQLEELKRELA 726

Query: 472 RLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFS 531
            L    EQ  S  EE+EE   +    + E +  LE+     E   + + + ++ + EE  
Sbjct: 727 ALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEI-EELE 785

Query: 532 STLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLE 591
                 +EE++E   ++E AE+ L  L  EL++ E +    E EI   + E +EL EKL+
Sbjct: 786 EKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLD 845

Query: 592 AVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERA 651
            +  + +  E+E   ++++   LE + +   +  +E++E  +  E+E ++         +
Sbjct: 846 ELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELREL-------ES 898

Query: 652 EAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTD---------LTNEVNRIRESE 702
           E A  ++   +      E  A +ER++ ++  LE +  +         L  E+ R+ E E
Sbjct: 899 ELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERL-EEE 957

Query: 703 LEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLES 747
           +EAL  V L   R  E  +E+E   E    QR    +  E LLE 
Sbjct: 958 IEALGPVNL---RAIEEYEEVEERYEELKSQREDLEEAKEKLLEV 999

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 75.9 bits (187), Expect = 7e-14
 Identities = 72/351 (20%), Positives = 146/351 (41%), Gaps = 11/351 (3%)

Query: 457 SEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTS 516
           + +   K R   AE +L    E     ++ +EE +++     R+A+ A     +  E   
Sbjct: 165 AGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRE 224

Query: 517 KEMQQREDVLR------EEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMR 570
            E+      L+      EE    L+  EEE++E   ++E AE+ +  L+ EL+    ++ 
Sbjct: 225 LELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELE 284

Query: 571 SYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQE 630
             + E+   K E +EL  ++  +  + +  E E   +E+    L++K ++  E  EE + 
Sbjct: 285 ELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERET 344

Query: 631 RCKVAEKEAKKATELADRERAEAAAARKG----KSEFENLAMERMAVIERVQRQIESLER 686
             +  E+   +  E  +    + +A  +              E  A +  ++ ++E L+R
Sbjct: 345 LLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKR 404

Query: 687 QKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLE 746
           +   L   + R+ E   +   ++  LEA +EE + E+E L E   E      +  + L E
Sbjct: 405 EIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKE 464

Query: 747 SERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAV 797
            ER        +      E+ S +A+LD ++ E   ++     L +    +
Sbjct: 465 LERELAELQEELQRLEK-ELSSLEARLDRLEAEQRASQGVRAVLEALESGL 514

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 70.5 bits (173), Expect = 3e-12
 Identities = 83/343 (24%), Positives = 149/343 (43%), Gaps = 25/343 (7%)

Query: 462 LKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQ 521
            K R    E +L   RE     ++ + E +R+     R+A+ A     +  E    E+  
Sbjct: 170 YKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELAL 229

Query: 522 REDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKL 581
               L E          EE++E   +++ AE+ L  L  EL+  E K+    +E+S  + 
Sbjct: 230 LVLRLEE--------LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEE 281

Query: 582 ETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEA-- 639
           E +EL ++L A+  +    E++ +I+ +    LE++ +    + EE++ +     +E   
Sbjct: 282 EIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAE 341

Query: 640 --KKATELA---DRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNE 694
             +K  EL    +   AE         E E+   E    +E ++ ++  LE Q   L NE
Sbjct: 342 LEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE 401

Query: 695 VNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAA 754
           + R+ E+ LE       LE R E  ++EIE LL+   E     +K+L+  LE        
Sbjct: 402 IERL-EARLER------LEDRRERLQQEIEELLKKLEEAE---LKELQAELEELEEELEE 451

Query: 755 ANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAV 797
                ERL   ++  + +L+E +Q L  A      L ++L ++
Sbjct: 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL 494

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 69.7 bits (171), Expect = 5e-12
 Identities = 74/340 (21%), Positives = 140/340 (41%), Gaps = 26/340 (7%)

Query: 498 VREAKAALEKAAIVQERTSKEMQQREDVLRE----------------EFSSTLAEKEE-E 540
           V + K   E+A    ERT + +++ ED+L E                 +    AE  E E
Sbjct: 167 VSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELE 226

Query: 541 MKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSF 600
           +     K++   + L  L  EL   E ++   + E+   + E +EL  +LE +  + +  
Sbjct: 227 LALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEEL 286

Query: 601 EREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGK 660
           + E   ++++   LE +     ER EE++   +  E+  ++  E  +  + E        
Sbjct: 287 QEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLL 346

Query: 661 SEFENLAMERMAVIERVQR----QIESLERQKTDLTNEVNRIRESELEALSKVALLEARV 716
            E E L  E     E ++      +E LE     L  E+  +     E  +++  L+  +
Sbjct: 347 EELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREI 406

Query: 717 EEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEM 776
           E  E+ +E L E   + +   +K+LE  LE  +      N   E L  +++  + +L E+
Sbjct: 407 ESLEERLERLSERLEDLKEE-LKELEAELEELQTELEELNEELEELEEQLEELRDRLKEL 465

Query: 777 QQELTKARLNETALGSKLRAVSHGKRARADDYEAGVGSVQ 816
           ++EL + +     L  +L +      AR D  EA   + Q
Sbjct: 466 ERELAELQEELQRLEKELSS----LEARLDRLEAEQRASQ 501

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 69.7 bits (171), Expect = 5e-12
 Identities = 65/324 (20%), Positives = 139/324 (42%), Gaps = 26/324 (8%)

Query: 458 EIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSK 517
           +IE L+ +    E  LA  R++    +EE+E+ +++     R+  A  +  A ++    +
Sbjct: 685 KIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ 744

Query: 518 EMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEIS 577
             ++   + +E     L E E E++E   ++E AE+       EL  AE+++   E +I 
Sbjct: 745 LEERIAQLSKE-----LTELEAEIEELEERLEEAEE-------ELAEAEAEIEELEAQIE 792

Query: 578 SQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEK 637
             K E K L E L+ + A+      EA  + +    LE++  +   R E+++E+ +   +
Sbjct: 793 QLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSE 852

Query: 638 EAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNR 697
           + +      +                 N        +  ++ ++E L  +  +L ++ + 
Sbjct: 853 DIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSE 912

Query: 698 IRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANA 757
           +R    E   K+A LE R+E  E  I++L E  +E+           LE        A A
Sbjct: 913 LRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE-------YSLTLE-------EAEA 958

Query: 758 MAERLSLEVQSAQAKLDEMQQELT 781
           +  ++  + + A+ +L  ++ ++ 
Sbjct: 959 LENKIEDDEEEARRRLKRLENKIK 982

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 66.7 bits (163), Expect = 4e-11
 Identities = 68/315 (21%), Positives = 137/315 (43%), Gaps = 11/315 (3%)

Query: 363 IEDNMKLLKKQLEDSERYK--SEYLKRYDDA-----INDKKKLADDYTSRINNLQGENIS 415
           +E  ++ L++Q E +ERY+     L+  + A     + + +K  ++    ++ L+ E   
Sbjct: 198 LEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEE 257

Query: 416 LREKSSSLSKTVDSLKNEISDWKRKYDQV---LTKQKAMEDQVCSEIEVLKSRSTAAEAR 472
           L+E+     K ++ LK+E+ + + + +++   L + K   +++  EI +L+ R    E  
Sbjct: 258 LQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENE 317

Query: 473 LAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSS 532
           L    E+    +E++E  K +           LE+     E   +E++++   L EE   
Sbjct: 318 LEELEERLEELKEKIEALKEELE-ERETLLEELEQLLAELEEAKEELEEKLSALLEELEE 376

Query: 533 TLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEA 592
                 EE+ E   ++      L  L+ E+++ E ++      +   K E KEL  +LE 
Sbjct: 377 LFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEE 436

Query: 593 VNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAE 652
           +  + +    E   +E+    L  + K       E+QE  +  EKE        DR  AE
Sbjct: 437 LQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAE 496

Query: 653 AAAARKGKSEFENLA 667
             A++  ++  E L 
Sbjct: 497 QRASQGVRAVLEALE 511

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 65.8 bits (161), Expect = 8e-11
 Identities = 66/370 (17%), Positives = 152/370 (41%), Gaps = 46/370 (12%)

Query: 363  IEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSS 422
            +E+ +  L+K L +      + L+  ++ +   +K  ++ + +I+ L+ +   L  +   
Sbjct: 689  LEEKIAELEKALAELR----KELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ 744

Query: 423  LSKTVDSLKNEISDW---KRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQ 479
            L + +  L  E+++      + ++ L + +    +  +EIE L+++    +  L A RE 
Sbjct: 745  LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREA 804

Query: 480  ALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEE 539
                + E+     +    +RE   +LE+     ER  ++++++           + E  E
Sbjct: 805  LDELRAELTLLNEEAA-NLRERLESLERRIAATERRLEDLEEQ-----------IEELSE 852

Query: 540  EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQS 599
            +++  A +IE  E+ +  L  EL+A  ++  S E  ++  + E +ELSE+L         
Sbjct: 853  DIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRE------- 905

Query: 600  FEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKG 659
                   +E  +  L ++ +   E+  +++ R +  E            +  +   + + 
Sbjct: 906  -------LESKRSELRRELEELREKLAQLELRLEGLE---------VRIDNLQERLSEEY 949

Query: 660  KSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEER 719
                E  A      IE      E   R+   L N++  +    L A+ +   L+ R +  
Sbjct: 950  SLTLEE-AEALENKIED---DEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFL 1005

Query: 720  EKEIESLLES 729
              + E L E+
Sbjct: 1006 TAQKEDLTEA 1015

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 64.3 bits (157), Expect = 2e-10
 Identities = 64/316 (20%), Positives = 125/316 (39%), Gaps = 17/316 (5%)

Query: 361 RSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKK--LADDYTSRINNLQGENISLRE 418
             +E  +K L++Q E +ERY     K     + + +   L          L+     L+E
Sbjct: 196 NELERQLKSLERQAEKAERY-----KELKAELRELELALLVLRLEELREELEELQEELKE 250

Query: 419 KSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQ------VCSEIEVLKSRSTAAEAR 472
               L +    L+      +    +V   ++ +E+       + +EI  L+ +      R
Sbjct: 251 AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRER 310

Query: 473 LAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTS--KEMQQREDVLREEF 530
           LA    Q    + ++EE + K      E     EK   ++E     +   +  +   EE 
Sbjct: 311 LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL 370

Query: 531 SSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKL 590
            S L E EE+++   +K+   E  + +L  E++  E+++   E      + E +EL +KL
Sbjct: 371 ESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL 430

Query: 591 EAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRER 650
           E    K    E E    E ++  L+++ +   E  EE++E  + AE+    A     + +
Sbjct: 431 EEAELKELQAELEELEEELEE--LQEELERLEEALEELREELEEAEQALDAAERELAQLQ 488

Query: 651 AEAAAARKGKSEFENL 666
           A   +  + +   E  
Sbjct: 489 ARLDSLERLQENLEGF 504

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 64.4 bits (157), Expect = 2e-10
 Identities = 76/464 (16%), Positives = 170/464 (36%), Gaps = 36/464 (7%)

Query: 350 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNL 409
           G     L      +E   + LK+  +  E  + +  +  +  I   ++   +       L
Sbjct: 192 GQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERL 251

Query: 410 QGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRS--- 466
           +     L E  S   + +   + E+ + +R  +++  K + +E+    EIE L+      
Sbjct: 252 EELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELE-REIEELEEELEGL 310

Query: 467 TAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVL 526
            A    L    E+  S +E +E+ + K      + ++ LE+ A  +   +K +++R   L
Sbjct: 311 RALLEELEELLEKLKSLEERLEKLEEKL----EKLESELEELAEEKNELAKLLEERLKEL 366

Query: 527 REEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKEL 586
            E       E E+ ++      E  ++       EL    + +   + E+   + E +EL
Sbjct: 367 EERLEELEKELEKALERLKQLEEAIQELKE----ELAELSAALEEIQEELEELEKELEEL 422

Query: 587 SEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKE-----AKK 641
             +LE +  + +  E +   +E  ++ + +             E+C V  +E      K+
Sbjct: 423 ERELEELEEEIKKLEEQINQLESKELMIAE--------LAGAGEKCPVCGQELPEEHEKE 474

Query: 642 ATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRES 701
             EL + E  E       + E   L  E   + + ++   E L             + E 
Sbjct: 475 LLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEK 534

Query: 702 ELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAER 761
             +  + +  LE   E+ + +         E R   +K+L + L   R  +         
Sbjct: 535 LEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKE-------- 586

Query: 762 LSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAVSHGKRARA 805
              E++  + +L E++++L +     + L   L+++   +    
Sbjct: 587 ---ELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENE 627

Length = 908

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 63.9 bits (156), Expect = 3e-10
 Identities = 110/459 (23%), Positives = 201/459 (43%), Gaps = 66/459 (14%)

Query: 346 IDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYK--SEYLKRYDDAINDKKKLADDYT 403
           I ++      L  +   +E+ +K LK+  E +E Y   SE+ + Y D + + +K      
Sbjct: 261 IRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLE 320

Query: 404 SRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMED--QVCSEIEV 461
             IN ++     L EK   L +    LK ++ + +++ +++  + +  E+      E+E 
Sbjct: 321 EEINGIEERIKELEEKEERLEE----LKKKLKELEKRLEELEERHELYEEAKAKKEELER 376

Query: 462 LKSRSTAAE-ARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALE--KAAIVQERTSK- 517
           LK R T     +L    E+   A+EE+EE   K    + E K  ++  K AI + + +K 
Sbjct: 377 LKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKG 436

Query: 518 ---------EMQQREDVLRE---------EFSSTLAEKEEEMKEKATKIEHA---EQCLT 556
                      + R+++L E         +    + EKE +++++  ++E     E  L 
Sbjct: 437 KCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELI 496

Query: 557 TLRL---ELKAAESKMRSYEVEISSQKLE----TKELS--------------EKLEAVNA 595
            L+    +LK  E K++ Y +E   +K E     KE                EKLE +  
Sbjct: 497 KLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKK 556

Query: 596 KAQSFEREARIMEQDKVYLEQKYKSE-FERFEEVQERCKVAEKEAKKATELADRERAEAA 654
           K    E++   +E++   L ++ +   FE  EE++ER K  E    +  EL D E+    
Sbjct: 557 KLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELER 616

Query: 655 AARKGKSEFENLAM------ERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK 708
             ++ K   E L        E    +E +++++E LE++ ++   E   +RE  LE   +
Sbjct: 617 EEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYE--ELREEYLELSRE 674

Query: 709 VALLEARVEEREK---EIESLLESNNEQRASTVKKLEDL 744
           +A L A +EE EK   EI+  LE   E+     K  ++L
Sbjct: 675 LAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKEL 713

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 63.6 bits (155), Expect = 4e-10
 Identities = 60/356 (16%), Positives = 145/356 (40%), Gaps = 24/356 (6%)

Query: 365  DNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLS 424
              ++   ++LE+  +     L+  +D + + ++  ++   ++  L+ E  +L E+   L 
Sbjct: 677  AELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQ 736

Query: 425  KTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQ 484
              ++ L+ E+ + + + +++  + + +E+++   +E   ++       L   R+      
Sbjct: 737  SRLEELEEELEELEEELEELQERLEELEEEL-ESLEEALAKLKEEIEELEEKRQALQEEL 795

Query: 485  EEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEM----QQREDVLREEFSSTLAEKEEE 540
            EE+EE   +    +   +  LE     +ER  +E+    ++ E++  +        +E E
Sbjct: 796  EELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELE 855

Query: 541  MKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSF 600
             + +             L+ EL+  E++    E E+   + E +EL E+L  + ++    
Sbjct: 856  KELEE------------LKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAEL 903

Query: 601  EREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGK 660
            + E   + +    LE K +       E++E  ++ E+         +RE        +  
Sbjct: 904  KEEIEKLRERLEELEAKLERLEVELPELEE--ELEEEYEDTLETELEREIERLEEEIEAL 961

Query: 661  SEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRE--SELEALSKVALLEA 714
                  A+E     E V+ + E L+ Q+ DL     ++ E   EL+   +    E 
Sbjct: 962  GPVNLRAIEE---YEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKET 1014

Length = 1163

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 60.9 bits (147), Expect = 3e-09
 Identities = 101/480 (21%), Positives = 197/480 (41%), Gaps = 34/480 (7%)

Query: 435  SDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKY 494
            ++ K+K D+   K+KA E +   E    K ++  A+ +  AA+++A  A++  E  K + 
Sbjct: 1298 AEEKKKADEA--KKKAEEAKKADE---AKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEA 1352

Query: 495  GVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAE----KEEEMKEKATKIEH 550
              A  EA+AA EKA   +++  +  ++ +   ++      A+    K EE K+KA +++ 
Sbjct: 1353 EAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKK 1412

Query: 551  AEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFER---EARIM 607
            A           K AE K ++ E +  +++ +  + ++K      KA+  ++   EA+  
Sbjct: 1413 AAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKA 1472

Query: 608  EQDKVYLEQKYKSE-----FERFEEVQERCKVAEKEAKKATELADRERA----EAAAARK 658
            ++ K   E+  K++      E  ++  +  K A +  KKA E    E A    EA  A +
Sbjct: 1473 DEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEE 1532

Query: 659  GKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEE 718
             K   E    E     + +++  E  + ++     E  +  E +  AL K    +   E 
Sbjct: 1533 AKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEA 1592

Query: 719  REKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQ 778
            R +E+  L E   + +A   KK       E + +A     AE    +V+  + K  E ++
Sbjct: 1593 RIEEVMKLYEEEKKMKAEEAKK-----AEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK 1647

Query: 779  ELTKARLNETALGSKLRAVSHGKRARADDYEAGVGSVQEMDTNDKVLRANKRSRSTTSPL 838
            +  + +  E    +K++A    K+A  D  +A      E D         K +       
Sbjct: 1648 KAEELKKAEEE--NKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE 1705

Query: 839  KYTQPEDGGSVFRGDDDNLSQQSNQEDYTKFTVQKLKQELTKHNFGAELLQLRNPNKKEI 898
            +  + E        +     +    E+  K   ++ K+E  +    AE  +     KK+I
Sbjct: 1706 ELKKKEA------EEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKI 1759

Length = 2084

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 60.5 bits (147), Expect = 4e-09
 Identities = 84/387 (21%), Positives = 163/387 (42%), Gaps = 30/387 (7%)

Query: 434 ISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRK 493
           +S +K + ++   K +  E+     +E L         +L    E+A   QE   E +  
Sbjct: 167 VSKYKERKEEAERKLERTEEN-LERLEDLLEELEKQLEKLERQAEKAERYQELKAELREL 225

Query: 494 YG-------VAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKAT 546
                      +R+    LE+     E   +E+Q+      EE    + E + E++E   
Sbjct: 226 ELALLLAKLKELRKELEELEEELSRLEEELEELQEE----LEEAEKEIEELKSELEELRE 281

Query: 547 KIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARI 606
           ++E  ++ L  L+ E++  E ++      +   + E +EL E+LE +  K ++ + E   
Sbjct: 282 ELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEE 341

Query: 607 MEQDKVYLEQK---YKSEFERFEEVQERCKVAEKEAKKA--TELADRERAEAAAARKG-- 659
            E     LEQ     +   E  EE         +E  +A   ELA+ E   A    +   
Sbjct: 342 RETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEE 401

Query: 660 -KSEFENLAMER---MAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEAR 715
            K E E+L          +E ++ +++ LE +  +L  E+  + E   E   ++  L  R
Sbjct: 402 LKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDR 461

Query: 716 VEEREKE---IESLLESNNEQRASTVKKLEDLLESERRSRAAANAM--AERLSLEVQSAQ 770
           ++E E+E   ++  L+   ++ +S   +L+ L   +R S+     +   E     V    
Sbjct: 462 LKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPV 521

Query: 771 AKLDEMQQELTKARLNETALGSKLRAV 797
           A+L +++++   A   E ALG++L+AV
Sbjct: 522 AELIKVKEKYETAL--EAALGNRLQAV 546

Length = 1163

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 60.1 bits (146), Expect = 4e-09
 Identities = 94/465 (20%), Positives = 181/465 (38%), Gaps = 49/465 (10%)

Query: 370 LKKQLEDSERYKSEYLKRYD---DAINDKKKLADDYTSRINNLQGENISLREKSSSLSKT 426
           L+ ++ED     +E  +  +   + + D ++  ++     ++L  E       + ++   
Sbjct: 256 LEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEAR 315

Query: 427 VDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEE 486
            + L++   + + + ++     +A       E E L+  +   E R    RE+A   + E
Sbjct: 316 REELEDRDEELRDRLEECRVAAQAHN----EEAESLREDADDLEERAEELREEAAELESE 371

Query: 487 VEEWKRKYGVAVREAKAALE----KAAIVQERTSKEMQQREDV--LREEFSSTLAEKEEE 540
           +EE +     AV + +  +E    +   ++ER         +     EE      E  E 
Sbjct: 372 LEEAR----EAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRER 427

Query: 541 MKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSF 600
             E    +  A + +      L+A +       VE S      +E  E++E + A+ +  
Sbjct: 428 EAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDL 487

Query: 601 EREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEK--EAKKATELADRERAEAAAARK 658
           E E   +E+     E   ++E +R E ++ER +  E+    ++ T    RERAE    R 
Sbjct: 488 EEEVEEVEERLERAEDLVEAE-DRIERLEERREDLEELIAERRETIEEKRERAEELRERA 546

Query: 659 GKSEFE-----NLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLE 713
            + E E       A E     E  + ++  L  +  +L           +E+L ++  L 
Sbjct: 547 AELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELK--------ERIESLERIRTLL 598

Query: 714 ARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLS-LEVQSAQAK 772
           A + + E EIE L E           K E L E     R       ER   LE +  +A+
Sbjct: 599 AAIADAEDEIERLRE-----------KREALAELNDERRERLAEKRERKRELEAEFDEAR 647

Query: 773 LDEMQQELTKARLNETALGSKLRAVSHGKRARADDYEAGVGSVQE 817
           ++E +++  +A      +  KL       R   DD +A +G+V+ 
Sbjct: 648 IEEAREDKERAEEYLEQVEEKLDE----LREERDDLQAEIGAVEN 688

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 59.7 bits (145), Expect = 7e-09
 Identities = 63/323 (19%), Positives = 134/323 (41%), Gaps = 23/323 (7%)

Query: 499 REAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTL 558
           R+ + ALE+   V+E   + +    D  R++      E+E+  + +A   E  E     L
Sbjct: 170 RKKEKALEELEEVEEN-IERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYEL 228

Query: 559 RLELKAAESKMRSYEVEISSQKLE----TKELSEKLEAVNAKAQSFEREARIMEQDKVYL 614
             E +A E +  + E +++S + E    T+E+SE  + +    Q  E   + ++      
Sbjct: 229 LKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEE 288

Query: 615 EQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVI 674
           + + K +    E      + +  E ++  E A+          K ++E + L  E    I
Sbjct: 289 QLRVKEKIGELEAEIASLERSIAEKERELEDAEERL------AKLEAEIDKLLAE----I 338

Query: 675 ERVQRQIESLERQKTDLTNEVNRIRE------SELEALSK-VALLEARVEEREKEIESLL 727
           E ++R+IE   +++  LT E   ++E      +ELE + K  A     +++  +++E L 
Sbjct: 339 EELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLK 398

Query: 728 ESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNE 787
              NE +   + +L++ L+      A  NA    +  ++   + + ++   E+ K     
Sbjct: 399 REINELK-RELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKL 457

Query: 788 TALGSKLRAVSHGKRARADDYEA 810
             L + L           ++Y+ 
Sbjct: 458 EQLAADLSKYEQELYDLKEEYDR 480

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 58.6 bits (142), Expect = 1e-08
 Identities = 80/477 (16%), Positives = 197/477 (41%), Gaps = 51/477 (10%)

Query: 357 MLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISL 416
           + +    ++ ++ LK +L + E  + E LK  ++ + + ++L ++   +I  L+     +
Sbjct: 241 LAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREI 300

Query: 417 REKSSSLSKTV------DSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAE 470
            E    L          + L  ++   + + +++  K + +E ++    E     +   E
Sbjct: 301 EELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLE 360

Query: 471 ARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEF 530
            RL    E+    ++E+E+   +    + EA   L++         +E+Q+  + L +E 
Sbjct: 361 ERLKELEERLEELEKELEKALERLK-QLEEAIQELKEELAELSAALEEIQEELEELEKEL 419

Query: 531 SS---TLAEKEEEMKEKATKIEHAEQ-----------------CLTTLRLELKAAESKMR 570
                 L E EEE+K+   +I   E                  C   L  E +    ++ 
Sbjct: 420 EELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELY 479

Query: 571 SYEVEISSQKL----ETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFE 626
             E+E   ++L    E  EL E++E +  + +  E E   + + +  L+++ + + E+ E
Sbjct: 480 ELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLE 539

Query: 627 EVQERCKVAEKEAK------KATELADRERA--EAAAARKGKSEFENLAMERMAVIERVQ 678
            + E  +  +++ +      +  +L DR +   E     +     +    E    ++ ++
Sbjct: 540 NLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELK 599

Query: 679 RQIESLERQKTDLTNEVNRI-----------RESELEALSKVALLEARVEEREKEIESLL 727
           ++++ LE + + L   +  +            E ELE+  +   L+A +EE  +     L
Sbjct: 600 KKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEEL 659

Query: 728 ESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKAR 784
           E   E+  + +++    +E+E +       + + L  E++  + +L+E+ ++L +  
Sbjct: 660 EEKVEELEAEIRRELQRIENEEQLEEKLEELEQ-LEEELEQLREELEELLKKLGEIE 715

Length = 908

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 56.2 bits (136), Expect = 7e-08
 Identities = 57/304 (18%), Positives = 118/304 (38%), Gaps = 50/304 (16%)

Query: 527 REEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKEL 586
             + +S++ E+  E++E   KIE  E+ +  L   L     ++   E E+   + E +EL
Sbjct: 665 SAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL 724

Query: 587 SEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELA 646
           S ++ A+       E E   +E+    L ++                + E EA+      
Sbjct: 725 SRQISALRKDLARLEAEVEQLEERIAQLSKE----------------LTELEAEIEELEE 768

Query: 647 DRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEAL 706
             E AE   A   ++E E L     A IE+++ ++++L     +L  E+  + E      
Sbjct: 769 RLEEAEEELAE-AEAEIEELE----AQIEQLKEELKALREALDELRAELTLLNEEAANLR 823

Query: 707 SKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEV 766
            ++  LE R+   E+ +E L E                               E LS ++
Sbjct: 824 ERLESLERRIAATERRLEDLEEQ-----------------------------IEELSEDI 854

Query: 767 QSAQAKLDEMQQELTKARLNETALGSKLRAVSHGKRARADDYEAGVGSVQEMDTNDKVLR 826
           +S  A+++E+++ + +      AL ++  ++         + E     ++E+++    LR
Sbjct: 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR 914

Query: 827 ANKR 830
               
Sbjct: 915 RELE 918

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 55.9 bits (134), Expect = 9e-08
 Identities = 68/316 (21%), Positives = 125/316 (39%), Gaps = 25/316 (7%)

Query: 438  KRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVA 497
            K+K D++   +KA E +   E +  +    A E +  A R+   + + E    +    + 
Sbjct: 1545 KKKADEL---KKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLY 1601

Query: 498  VREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTT 557
              E K   E+A   +E   K  + ++    ++    L +KE E K+KA +++ AE+    
Sbjct: 1602 EEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKI 1661

Query: 558  LRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK 617
               E      + +    E    + + K+ +E L+    +A+  E   +   ++K   E+ 
Sbjct: 1662 KAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEEL 1721

Query: 618  YKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSE---FENLAMERMAVI 674
             K+E E   + +E  K AE++ KKA E    E  +   A   K E    E +  E+ AVI
Sbjct: 1722 KKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVI 1781

Query: 675  ERVQRQIESLERQKTDLTNE-------------------VNRIRESELEALSKVALLEAR 715
            E    + +   R + D   +                   +N  +E E  A+ +VA  +  
Sbjct: 1782 EEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNM 1841

Query: 716  VEEREKEIESLLESNN 731
              E     E    + N
Sbjct: 1842 QLEEADAFEKHKFNKN 1857

Length = 2084

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 55.5 bits (134), Expect = 1e-07
 Identities = 106/488 (21%), Positives = 204/488 (41%), Gaps = 60/488 (12%)

Query: 343 KRLIDQIGSERSSLMLKYRSIEDNMKLLK------------------------KQLEDSE 378
            + ++++  E   L  +  S+E + + L+                        K+L++ +
Sbjct: 230 VKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELK 289

Query: 379 RYKSEYLK------RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKN 432
               EY+K       Y D + + +K        IN ++     L EK   L +    LK 
Sbjct: 290 EKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEE----LKK 345

Query: 433 EISDWKRKYDQVLTKQKAMED--QVCSEIEVLKSRSTAAE-ARLAAAREQALSAQEEVEE 489
           ++ + +++ +++  + +  E+      E+E LK R T     +L    E+   A+EE+EE
Sbjct: 346 KLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEE 405

Query: 490 WKRKYGVAVREAKAALE--KAAIVQERTSKEM---------QQREDVLREEFSSTLAEKE 538
              K    + E K  ++  K AI + + +K           ++    L EE+++ L   E
Sbjct: 406 EISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIE 465

Query: 539 EEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQ 598
           +E+KE   K     + L  L   LK     ++  E+    ++LE K     LE +  KA+
Sbjct: 466 KELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAE 525

Query: 599 SFEREARIMEQDKVYLEQK-YKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAAR 657
            +E+     +  K+  E K  K E E+ EE++++    EK+  +  E  +          
Sbjct: 526 EYEKLKE--KLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEE--ELAELLKELEE 581

Query: 658 KGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELE---ALSKVALLEA 714
            G    E L  ER+  +E    +   L+  + +L  E   +++ E E   A  ++A  E 
Sbjct: 582 LGFESVEELE-ERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEK 640

Query: 715 RVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLD 774
           R+EE  KE+E L +  +E+     ++L +      R  A   A  E L    +  +  L+
Sbjct: 641 RLEELRKELEELEKKYSEE---EYEELREEYLELSRELAGLRAELEELEKRREEIKKTLE 697

Query: 775 EMQQELTK 782
           ++++EL +
Sbjct: 698 KLKEELEE 705

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 53.9 bits (130), Expect = 4e-07
 Identities = 52/250 (20%), Positives = 120/250 (48%), Gaps = 21/250 (8%)

Query: 346 IDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSR 405
           ++++  E      +   +   ++ L+++LE+     SE     ++ I + +K      + 
Sbjct: 241 LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSEL----EEEIEELQKELYALANE 296

Query: 406 INNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCS-------- 457
           I+ L+ +   LRE+ ++L + ++ L+ ++ + + K D++  +   +E+++          
Sbjct: 297 ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESL 356

Query: 458 --EIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVA---VREAKAALEKAAIVQ 512
             E+E L++     E+RL    EQ  + + +V + + +       +   +A LE+    +
Sbjct: 357 EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR 416

Query: 513 ERTSKEMQQREDVL----REEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESK 568
           ER  +E+++    L     +E  + L E EEE++E   ++E  E+ L  LR EL+ AE  
Sbjct: 417 ERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQA 476

Query: 569 MRSYEVEISS 578
           + + E E++ 
Sbjct: 477 LDAAERELAQ 486

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 53.5 bits (129), Expect = 4e-07
 Identities = 88/440 (20%), Positives = 196/440 (44%), Gaps = 40/440 (9%)

Query: 359 KYRSIEDNMKLLKKQLEDSERYKSEYLKR---YDDAINDKKKLADDYTSRINNLQGENIS 415
            Y +   N+  + K+++       +++KR    ++ I +K+K  ++    IN +  E   
Sbjct: 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPE 218

Query: 416 LREKSSSLSK---TVDSLKNEISDWKRKYDQVLTKQKAMED---QVCSEIEVLKSRSTAA 469
           LRE+   L K    ++ LK EI + +++ + +   ++ +E+   ++   IE LK      
Sbjct: 219 LREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEEL 278

Query: 470 EARLAAAREQALSAQE--EVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLR 527
           E ++   +E    A+E  ++ E+  +Y   +RE +  L +         + +++ E+  +
Sbjct: 279 EEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEE--K 336

Query: 528 EEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELS 587
           EE    L +K +E++++  ++E   +       E KA + ++   +  ++    E  +L 
Sbjct: 337 EERLEELKKKLKELEKRLEELEERHELYE----EAKAKKEELERLKKRLTGLTPE--KLE 390

Query: 588 EKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELAD 647
           ++LE +    +  E E   +      L+++ K   +  EE+        K+AK    +  
Sbjct: 391 KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEEL--------KKAKGKCPVCG 442

Query: 648 RERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRI-----RESE 702
           RE  E           + L  E  A ++R++++++ +E ++  L  E+  +     +ESE
Sbjct: 443 RELTE--------EHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESE 494

Query: 703 LEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERL 762
           L  L ++A     +EE+ K+          +    +K+    L+ E +S        E L
Sbjct: 495 LIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEEL 554

Query: 763 SLEVQSAQAKLDEMQQELTK 782
             ++   + KLDE+++EL +
Sbjct: 555 KKKLAELEKKLDELEEELAE 574

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 53.9 bits (130), Expect = 4e-07
 Identities = 59/328 (17%), Positives = 142/328 (43%), Gaps = 32/328 (9%)

Query: 405 RINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKS 464
           R+  L+GE   L EKS +++    + +  I   + +  ++         ++   +E LK 
Sbjct: 640 RMVTLEGE---LFEKSGAMTGGSRAPRGGILFSRSEPAELQ--------RLRERLEGLKR 688

Query: 465 RSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQRED 524
             ++ ++ L     +     +E+ +  RK G   +E +   ++   ++ER  +E+++   
Sbjct: 689 ELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERL-EELEEDLS 747

Query: 525 VLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETK 584
            L +E    +   + E+KE   +IE  E+ L  L   L   E+++    +     +L   
Sbjct: 748 SLEQE----IENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELS-- 801

Query: 585 ELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATE 644
           +L E++  + A+ +  E++   +  +K YLE++ +   E+  +++E+             
Sbjct: 802 KLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ------------- 848

Query: 645 LADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELE 704
                  E       K E E    E  A +  ++ ++  L++++ +L  ++  +     E
Sbjct: 849 -IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEE 907

Query: 705 ALSKVALLEARVEEREKEIESLLESNNE 732
             +++     R+ E + ++E+L E  +E
Sbjct: 908 LEAQIEKKRKRLSELKAKLEALEEELSE 935

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 53.1 bits (128), Expect = 6e-07
 Identities = 53/334 (15%), Positives = 131/334 (39%), Gaps = 17/334 (5%)

Query: 400 DDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEI 459
            ++  +      E   + E    L   +D  + ++   +R+ ++    Q  ++++   E 
Sbjct: 166 AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEG 225

Query: 460 EVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEM 519
             L     A E +  A   Q  S +EE+E+   +     +  +   +    + ++     
Sbjct: 226 YELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLG 285

Query: 520 QQREDVLREEFSS----------TLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKM 569
           ++ +  ++E+             ++AEKE E+++   ++   E  +  L  E++  E ++
Sbjct: 286 EEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREI 345

Query: 570 RSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQ 629
                       E  EL E+LE + A+ +  ++E      +     +K +       E++
Sbjct: 346 EEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELK 405

Query: 630 ERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESL----- 684
                 ++E ++ +E      A  A      +E E    ++   I++ + ++E L     
Sbjct: 406 RELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLS 465

Query: 685 --ERQKTDLTNEVNRIRESELEALSKVALLEARV 716
             E++  DL  E +R+ +   +   ++A  EA+ 
Sbjct: 466 KYEQELYDLKEEYDRVEKELSKLQRELAEAEAQA 499

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 52.8 bits (127), Expect = 7e-07
 Identities = 86/375 (22%), Positives = 161/375 (42%), Gaps = 45/375 (12%)

Query: 332  QSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDA 391
              SE   L  ++  ++ +  E SSL  + R IE+ +  L ++L D+ R   E  K     
Sbjct: 669  SRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEK----- 723

Query: 392  INDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAM 451
                          I  L+ E   L+E+   L + + SL+ EI + K +  ++  + + +
Sbjct: 724  -------------EIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEEL 770

Query: 452  EDQVCSEIEVLKSRSTAAEARLAAAREQALSAQ-EEVEEWKRKYGVAVREAKAALEKAAI 510
            E+     +  L+      EARL+ +R   + A+  ++EE   +    +RE +  L +  +
Sbjct: 771  EED----LHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTL 826

Query: 511  VQERTSKEMQQREDVLR-------------EEFSSTLAEKEEEMKEKATKIEHAEQCLTT 557
             +E   KE+Q+ ++                E  +    E EEE++E    +   E  L  
Sbjct: 827  EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD 886

Query: 558  LRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK 617
            L+ E    E+++R  E +I   + + ++  ++L  + AK ++ E E   +E D    +++
Sbjct: 887  LKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIE-DPKGEDEE 945

Query: 618  YKSEFERFEEVQERCKVAEKEAKKATE---LADRERAEAAAARKG-KSEFENLAMERMAV 673
               E    E+VQ   +  E+E +       LA +E  E        K +   L  ER A+
Sbjct: 946  IPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAI 1005

Query: 674  IERVQRQIESLERQK 688
            +ER    IE  E++K
Sbjct: 1006 LER----IEEYEKKK 1016

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 52.4 bits (126), Expect = 1e-06
 Identities = 62/367 (16%), Positives = 154/367 (41%), Gaps = 25/367 (6%)

Query: 379  RYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWK 438
            R +   L+R  + +   K+      S +  ++     L ++ S  S+ +  ++ EI   +
Sbjct: 670  RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE 729

Query: 439  RKYDQVLTKQKAMEDQVCS---EIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYG 495
            ++ +++  + + +E+ + S   EIE +KS     EAR+    E     +E + + + +  
Sbjct: 730  QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS 789

Query: 496  VA-VREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEK--EEEMKEKATKIEHAE 552
             + + E +A L K   ++E  S+   +  ++ ++    TL ++  E+E++E   +    +
Sbjct: 790  HSRIPEIQAELSK---LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLK 846

Query: 553  QCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKV 612
            + + ++  E++    K    E E+   +   ++L  +L  +  +    E + R +E+   
Sbjct: 847  EQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKI- 905

Query: 613  YLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMER-- 670
               ++ +++ E+  +     K       K   L +          + +   E        
Sbjct: 906  ---EELEAQIEKKRKRLSELKA------KLEALEEELSEIEDPKGEDEEIPEEELSLEDV 956

Query: 671  MAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESN 730
             A ++RV+ +I +LE     +     +  E  L+ L ++    A++EE  K I   +E  
Sbjct: 957  QAELQRVEEEIRALE----PVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEY 1012

Query: 731  NEQRAST 737
             +++   
Sbjct: 1013 EKKKREV 1019

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 52.1 bits (124), Expect = 2e-06
 Identities = 84/443 (18%), Positives = 189/443 (42%), Gaps = 44/443 (9%)

Query: 372  KQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLK 431
            K+  D+ + K+E  K+  +A    K  A+         + +  +  +K     K  D+ K
Sbjct: 1328 KKKADAAKKKAEEAKKAAEA---AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAK 1384

Query: 432  NEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWK 491
             +  + K+K D+   K+KA ED+  ++    + +  AA  + A   ++    +++ +E K
Sbjct: 1385 KKAEE-KKKADEA--KKKAEEDKKKAD----ELKKAAAAKKKADEAKKKAEEKKKADEAK 1437

Query: 492  RKYGVAVREAKAA--LEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIE 549
            +K      EAK A   +K A   ++  +  ++ E+  + + +   AE+ ++  E   K E
Sbjct: 1438 KK----AEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAE 1493

Query: 550  HAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQ 609
             A++     +   KAAE+K ++ E + + +  +  E  +  EA  A       E +  ++
Sbjct: 1494 EAKKKADEAK---KAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADE 1550

Query: 610  DKVYLEQKYKSEFERFEEVQ-------------ERCKVAEKEAKKATELADRERAEAAAA 656
             K   E K   E ++ EE +             E  K AE+   +       E  +  A 
Sbjct: 1551 LKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAE 1610

Query: 657  RKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARV 716
               K+E   +  E +   E  ++++E L++++ +   +   ++++E E   K A    + 
Sbjct: 1611 EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA 1670

Query: 717  EEREKEIESLLESNNEQR------------ASTVKKLEDLLESERRSRAAANAMAERLSL 764
            EE +K+ E   ++  +++            A   ++L+     E++         E   +
Sbjct: 1671 EEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKI 1730

Query: 765  EVQSAQAKLDEMQQELTKARLNE 787
            + + A+ + +E +++  +A+ +E
Sbjct: 1731 KAEEAKKEAEEDKKKAEEAKKDE 1753

Length = 2084

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 51.6 bits (124), Expect = 2e-06
 Identities = 71/367 (19%), Positives = 139/367 (37%), Gaps = 43/367 (11%)

Query: 450 AMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAA 509
           A E ++   ++  +    +A A+   A EQ + A  E+EE KR    A  EA+ AL++A 
Sbjct: 600 ANETELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKR----AEAEARTALKQAR 655

Query: 510 IVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKM 569
           +  +R   E Q  +D           + E  + E+  +   AE  L  L  +LK    + 
Sbjct: 656 LDLQRLQNEQQSLKD-----------KLELAIAERKQQ---AETQLRQLDAQLKQLLEQQ 701

Query: 570 RSYEVEISSQKLE-TKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEV 628
           +++   +     E   E   K + V       E + ++ +     +E        R +E+
Sbjct: 702 QAFLEALKDDFRELRTERLAKWQVVEG-----ELDNQLAQLSAA-IEAARTQAKARLKEL 755

Query: 629 QERCKVAEKEAKKATELADRERAEAAAARKGKSEFENL--AMERMAVIERVQRQIESLER 686
           ++         +   ELA  +  +    ++ K + E L   +ER+AV     R+  +  +
Sbjct: 756 KK---------QYDRELASLD-VDPNTVKELKRQIEELETTIERIAVRRPEVREYRAFMQ 805

Query: 687 Q---KTDLTNEVNRIRESELEAL-SKVALLEARVEEREKEIESLLESNNEQRASTVKKLE 742
           +     D   E       +L  L S    L+  +    K+ +   +   ++R +  K+L+
Sbjct: 806 ETWLHRDSLREERPNLAIQLRELESSAEELQQELTRLIKDTKLRRKKLEQERKALEKQLD 865

Query: 743 DLLESERRSRAAANAMAE-RLSLEVQSAQAKLDEMQQELTKARL-NETALGSKLRAVSHG 800
            L E  R  R     +AE +       A+  + E   +L + +   +   G   + +   
Sbjct: 866 QLDELLRGLRDEMRQLAELKEPANANQAEGSISERLDQLEEFKRKRKRLSGDLKKFLERF 925

Query: 801 KRARADD 807
                D 
Sbjct: 926 DGVIKDH 932

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 51.2 bits (123), Expect = 2e-06
 Identities = 95/404 (23%), Positives = 171/404 (42%), Gaps = 33/404 (8%)

Query: 386 KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVL 445
           K +D  + + K+  D+  + ++  Q E    R  S+ L +    LKNE+ + K + + + 
Sbjct: 380 KNFDKILAEWKRKVDELQAELDTAQREA---RNLSTELFR----LKNELEELKDQVEALR 432

Query: 446 TKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAAL 505
            + K ++D    EI  L       E        +    + E E  K +   A+ EA+AAL
Sbjct: 433 RENKNLQD----EIHDLTD--QLGEGGRNVHELEKARRRLEAE--KDELQAALEEAEAAL 484

Query: 506 EKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAA 565
           E       R   E+ Q    +R E    LAEKEEE +      + A + L    LE   A
Sbjct: 485 ELEESKVLRAQVELSQ----IRSEIERRLAEKEEEFENTRKNHQRAIESLQA-TLE---A 536

Query: 566 ESKMRSYEVEISSQKLET--KELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFE 623
           E+K ++ E     +KLE    EL   L+  N      ++  +  +Q    L+ + + E  
Sbjct: 537 EAKGKA-EASRLKKKLEGDINELEIALDHANKANAEAQKNVKKYQQQVKELQTQVEEEQR 595

Query: 624 RFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIES 683
             E+ +E+  VAE+ A       +  R+    A + + + E    E    +  +  Q  S
Sbjct: 596 AREDAREQLAVAERRATALEAELEELRSALEQAERARKQAETELAEASERVNELTAQNSS 655

Query: 684 LERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLES--NNEQRASTVKKL 741
           L  QK  L  E+  ++    EA++++   E R ++ + +   L E     ++ +  +++L
Sbjct: 656 LIAQKRKLEGELAALQSDLDEAVNELKAAEERAKKAQADAARLAEELRQEQEHSQHLERL 715

Query: 742 EDLLESE-----RRSRAAANAMAERLSLEVQSAQAKLDEMQQEL 780
              LES+      R   A  A  +     +Q  +A++ E++ EL
Sbjct: 716 RKQLESQVKELQVRLDEAEAAALKGGKKMIQKLEARVRELEAEL 759

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 49.8 bits (119), Expect = 6e-06
 Identities = 55/282 (19%), Positives = 119/282 (42%), Gaps = 7/282 (2%)

Query: 458 EIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSK 517
            +E  +  S   +  +  A+ +    + ++ E        +   +  L++   ++E   +
Sbjct: 165 GLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEE 224

Query: 518 EMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEIS 577
           + ++  +   E     LAE EEE +          +  +     LK  E ++R  E  + 
Sbjct: 225 QEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLE 284

Query: 578 SQKLETKELSE-KLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAE 636
             + + + L E + E    + +     A + E ++  L +K KS  ER E+++E+ +  E
Sbjct: 285 ELEEKIERLEELEREIEELEEELEGLRALLEELEE--LLEKLKSLEERLEKLEEKLEKLE 342

Query: 637 KE----AKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLT 692
            E    A++  ELA           +   E E    + +  +++++  I+ L+ +  +L+
Sbjct: 343 SELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELS 402

Query: 693 NEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQR 734
             +  I+E   E   ++  LE  +EE E+EI+ L E  N+  
Sbjct: 403 AALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLE 444

Length = 908

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 49.4 bits (118), Expect = 8e-06
 Identities = 69/428 (16%), Positives = 166/428 (38%), Gaps = 26/428 (6%)

Query: 351 SERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQ 410
                L  K   +E  ++ L ++  +  +   E LK  ++ + + +K  +    R+  L+
Sbjct: 329 ERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLE 388

Query: 411 GENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVC---SEIEVLKSRST 467
                L+E+ + LS  ++ ++ E+ + +++ +++  + + +E+++     +I  L+S+  
Sbjct: 389 EAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKEL 448

Query: 468 AAEARLAAAREQALSAQ----EEVEEWKRKYGVAVREAKAALEKAAIVQE-----RTSKE 518
                  A  +  +  Q    E  +E    Y + + E +  L +     E        ++
Sbjct: 449 MIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEK 508

Query: 519 MQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKA--AESKMRSYEVEI 576
             +  +    E        +EE++EK  K+E+  + L  L+ +L+    + ++R  E  +
Sbjct: 509 ELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRL 568

Query: 577 SSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAE 636
              K   +EL   L     + +      + +++    LE++     E  + ++      E
Sbjct: 569 QELKELLEEL-RLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENE 627

Query: 637 KEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVN 696
            E  +    ++ E+    A      E E L    +  +E    ++E+  R++        
Sbjct: 628 LEEAEEELESELEKLNLQA------ELEELLQAALEELEEKVEELEAEIRRELQRIENEE 681

Query: 697 RIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAAN 756
           ++ E   E       LE   EE E+ ++ L E         +++LE         +    
Sbjct: 682 QLEEKLEELEQLEEELEQLREELEELLKKLGEIEQL-----IEELESRKAELEELKKELE 736

Query: 757 AMAERLSL 764
            + + L L
Sbjct: 737 KLEKALEL 744

Length = 908

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 49.3 bits (118), Expect = 8e-06
 Identities = 55/223 (24%), Positives = 94/223 (42%), Gaps = 11/223 (4%)

Query: 527 REEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKEL 586
           R+E    L E EE  +E    +E  E  +  LR  +   E +      E+   +   +EL
Sbjct: 236 RDEADEVLEEHEERREE----LETLEAEIEDLRETIAETEREREELAEEVRDLRERLEEL 291

Query: 587 SEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELA 646
            E+ + + A+A   + +A  +E  +  LE + +   +R EE +   +   +EA+   E A
Sbjct: 292 EEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDA 351

Query: 647 DRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEAL 706
           D     A   R+  +E E+   E    +E  + +IE LE +  +L             A 
Sbjct: 352 DDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAE 411

Query: 707 SKVALLEA---RVEEREKEIESLLESNNEQRASTVKKLEDLLE 746
             +  L      + ERE E+E+ L +  E     V++ E LLE
Sbjct: 412 DFLEELREERDELREREAELEATLRTARE----RVEEAEALLE 450

Length = 880

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 62/297 (20%), Positives = 127/297 (42%), Gaps = 6/297 (2%)

Query: 506 EKAAIVQERT-SKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKA 564
           E+  I+ E    ++ ++  ++L+E      A+ EE   + +  +E  E  L  L  ELK 
Sbjct: 155 ERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKE 214

Query: 565 AESKM-RSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFE 623
            +       E E    + E + L E+L  +  + +  E     + + +    +  K   E
Sbjct: 215 LKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREE 274

Query: 624 RFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIES 683
              E++   +  E++ ++  EL +RE  E     +G         E +  ++ ++ ++E 
Sbjct: 275 ELRELERLLEELEEKIERLEEL-EREIEELEEELEGLRALLEELEELLEKLKSLEERLEK 333

Query: 684 LERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLED 743
           LE +   L +E+  + E + E    +      +EER +E+E  LE   E+     + +++
Sbjct: 334 LEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQE 393

Query: 744 LLESERRSRAAANAMAERLS---LEVQSAQAKLDEMQQELTKARLNETALGSKLRAV 797
           L E      AA   + E L     E++  + +L+E+++E+ K       L SK   +
Sbjct: 394 LKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMI 450

Length = 908

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 48.1 bits (115), Expect = 2e-05
 Identities = 86/441 (19%), Positives = 180/441 (40%), Gaps = 65/441 (14%)

Query: 343 KRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDD---AINDKKKLA 399
           +  ++++  ER  L+ +    + + + ++ + E+ E    E   R ++   A     + A
Sbjct: 285 RERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEA 344

Query: 400 DDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYD----QVLTKQKAMED-- 453
           +      ++L+     LRE+++ L   ++  +  + D + + +    ++   ++   D  
Sbjct: 345 ESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAP 404

Query: 454 -----------QVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWK----------- 491
                      ++  E + L+ R    EA L  ARE+   A+  +E  K           
Sbjct: 405 VDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGS 464

Query: 492 ------RKYGVAVREAKAALEKAAIVQERTSKEMQQREDVL------------REEFSST 533
                  +    V E +A LE      E   + +++ ED++            RE+    
Sbjct: 465 PHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEEL 524

Query: 534 LAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAV 593
           +AE+ E ++EK  + E   +    L  E +         E E    + E  EL+ KL  +
Sbjct: 525 IAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAEL 584

Query: 594 NAKAQSFEREARIM------EQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELAD 647
             + +S ER   ++      E +   L +K ++  E     + R ++AEK  +K    A+
Sbjct: 585 KERIESLERIRTLLAAIADAEDEIERLREKREALAEL--NDERRERLAEKRERKRELEAE 642

Query: 648 RERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALS 707
            + A    AR+ K   E         +E+V+ +++ L  ++ DL  E+  + E+ELE L 
Sbjct: 643 FDEARIEEAREDKERAE-------EYLEQVEEKLDELREERDDLQAEIGAV-ENELEELE 694

Query: 708 KVALLEARVEEREKEIESLLE 728
           ++      +E R + +E+L +
Sbjct: 695 ELRERREALENRVEALEALYD 715

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 48.5 bits (116), Expect = 2e-05
 Identities = 48/219 (21%), Positives = 89/219 (40%), Gaps = 3/219 (1%)

Query: 616 QKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAM-ERMAVI 674
           +K   E E  EE  ER  +   E ++  E   RER +A   +    E       E +   
Sbjct: 173 EKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEK 232

Query: 675 ERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQ 733
           E ++RQ E++ERQ   L  E+ ++   E+  L K +  +E  +EE  K+I+ L E    +
Sbjct: 233 EALERQKEAIERQLASLEEELEKL-TEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLR 291

Query: 734 RASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSK 793
               + +LE  + S  RS A      E     +   +A++D++  E+ +          +
Sbjct: 292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKR 351

Query: 794 LRAVSHGKRARADDYEAGVGSVQEMDTNDKVLRANKRSR 832
              ++       ++ E     ++E+D      R   +  
Sbjct: 352 RDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDY 390

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 48.1 bits (115), Expect = 2e-05
 Identities = 40/180 (22%), Positives = 79/180 (43%), Gaps = 8/180 (4%)

Query: 644 ELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESEL 703
           EL ++  A    +R  +        E  A ++R++ ++E L+R+ + L +E+ RI     
Sbjct: 647 ELFEKSGAMTGGSRAPRGGILFSRSEP-AELQRLRERLEGLKRELSSLQSELRRIENRLD 705

Query: 704 EALSKVALLEARVEEREKEIESLLESNN------EQRASTVKKLEDLLESERRSRAAANA 757
           E   +++    ++ E EKEIE L +         E+    +  LE  +E+ +       A
Sbjct: 706 ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEA 765

Query: 758 MAERLSLEVQSAQAKLDEMQQELTKARLNE-TALGSKLRAVSHGKRARADDYEAGVGSVQ 816
             E L  ++   +  L++++  L+ +R+ E  A  SKL        AR  + E  +  + 
Sbjct: 766 RIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLT 825

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein

 Score = 47.2 bits (112), Expect = 3e-05
 Identities = 57/284 (20%), Positives = 118/284 (41%), Gaps = 17/284 (5%)

Query: 500 EAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLR 559
           E    L + A +    SK +Q   +++++E     A+ E E K       +  +    L 
Sbjct: 52  EESMTLLQRAELIRSKSKLIQLENELMQKELEHKRAQIELERKASTLAENYERELDRNLE 111

Query: 560 LE--LKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK 617
           LE  LKA E   +  E E +  + E K L +KL+A + K Q+ + +     ++ +   + 
Sbjct: 112 LEVRLKALEELEKKAENEAAEAEEEAKLLKDKLDAESLKLQNEKEDQLKEAKESISRIKN 171

Query: 618 YKSEFERFEEVQE-RCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIER 676
             SE +   +  +   K+ E E ++  E  +  + E A A K      +          +
Sbjct: 172 DLSEMQCRAQNADTELKLLESELEELREQLEECQKELAEAEKKLQSLTSEQASSADNSVK 231

Query: 677 VQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRAS 736
           ++   E L+R + D   EV +  + +L  + ++    A + E  +++ S+ E N      
Sbjct: 232 IKHLEEELKRYEQDA--EVVKSMKEQLLQIPELERELAALREENRKLRSMKEDN------ 283

Query: 737 TVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQEL 780
             + L++ LE  +        M E    ++   + + ++++ EL
Sbjct: 284 --ELLKEELEDLQSRLERFEKMRE----KLADLELEKEKLENEL 321

This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated. Length = 722

>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827)

 Score = 46.5 bits (110), Expect = 5e-05
 Identities = 80/374 (21%), Positives = 151/374 (40%), Gaps = 18/374 (4%)

Query: 429 SLKNEISDWKRKYDQVLTKQKAMEDQVC---SEIEVLKSRSTAAEARLAAAREQALSAQE 485
           SL   I+DWK    Q   +    E ++     E   LK     AE       ++  S + 
Sbjct: 12  SLFGGIADWKAHLPQRSERVLVKETELMLAQEEANKLKKELEVAEKEKLQVLKELESTKR 71

Query: 486 EVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKA 545
            VE+ K K   A +E + A + + + + R  +  Q  +++  E + +  AE +   +E  
Sbjct: 72  TVEDLKLKLEKAEKEEQQAKQDSELAKLRAEELEQGIQELEVERYITATAELDSVKEELR 131

Query: 546 TKIEHAEQCLTTLRLELKAAESKMRSYEV------EISSQKLETKELSEKLEAVNAKAQS 599
              +  +  +      LK AE  + + +V      E++ + +  KE  E+  A + +A+ 
Sbjct: 132 KIRQEYDALVEERDAALKRAEEAICASKVNEKKVEELTKEIIAMKESLERAHAAHLEAEE 191

Query: 600 FEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELA------DRERAEA 653
               A + +       +K   E E+  E  ++    EK+ +K  E +       +E +  
Sbjct: 192 ERIGAALEKDQDRETYEKELKEAEKELERLKQDLDPEKDLEKLAEASAELESLQKEISIM 251

Query: 654 AAARKGKSEFENL--AMERMAVIERVQRQ-IESLERQKTDLTNEVNRIRESELEALSKVA 710
           A+      E E     +E+ A  E+  R  +ESL+++  +   E+  +RE E EA    +
Sbjct: 252 ASVASVLKELEEAKANLEKAAEEEKSLRNLVESLKQELEEEKKELEELREKEGEAEEAAS 311

Query: 711 LLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQ 770
            LEA +   + E ES       +    +++     E  R+   AA     +L  E +  +
Sbjct: 312 SLEAELNRTKSEKESKAREKMVEIPLKLQQASSEAEEARKEAEAAREELRKLKEEAEQTK 371

Query: 771 AKLDEMQQELTKAR 784
           A L+  +  L  A 
Sbjct: 372 AALETAELRLEAAL 385

This family consists of several plant proteins of unknown function. Several sequences in this family are described as being "myosin heavy chain-like". Length = 484

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 46.6 bits (111), Expect = 6e-05
 Identities = 69/322 (21%), Positives = 132/322 (40%), Gaps = 31/322 (9%)

Query: 394 DKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMED 453
            +K+L ++YT+ +  ++ E   + EK   L K +  L+  +          L K K + +
Sbjct: 449 HRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESE-----LIKLKELAE 503

Query: 454 QVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAK--AALEKAAIV 511
           Q+    E LK  +      L    E+    +E++ + K +     +E +    L+K    
Sbjct: 504 QLKELEEKLKKYNLE---ELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAE 560

Query: 512 QERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRS 571
            E+   E+++    L +E      E  EE++E+  ++E          LELK AE ++  
Sbjct: 561 LEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEY----LELKDAEKELER 616

Query: 572 YEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQER 631
            E E+   + E  +  E+L     + +  E    + E +K Y E++Y+   E + E+   
Sbjct: 617 EEKELKKLEEELDKAFEELAETEKRLE--ELRKELEELEKKYSEEEYEELREEYLELSRE 674

Query: 632 CKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDL 691
                 E +   EL  R         K K E E          E+ ++++E LE+    +
Sbjct: 675 LAGLRAELE---ELEKRREEIKKTLEKLKEELEE--------REKAKKELEKLEKALERV 723

Query: 692 TNEVNRIRE----SELEALSKV 709
                ++++     +  ALSKV
Sbjct: 724 EELREKVKKYKALLKERALSKV 745

Length = 880

>gnl|CDD|205692 pfam13514, AAA_27, AAA domain

 Score = 46.7 bits (111), Expect = 6e-05
 Identities = 72/368 (19%), Positives = 116/368 (31%), Gaps = 39/368 (10%)

Query: 433 EISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKR 492
           E+ DW  +      + +A          +L  R     ARL AA   AL A   V   + 
Sbjct: 606 EMEDWLAERATAREQVRAYFKARAELDALLDRR-----ARLRAALRAALKAVAIVLPGEE 660

Query: 493 KYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAE 552
                +  A+  LE+A     R            +      L + E  ++E   + + A+
Sbjct: 661 -LAELLELARQLLEEAEKQAAR------------KASLDERLRDAERALEEAEERHDEAQ 707

Query: 553 QCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKV 612
             L   + +   A  +         +  L+  EL + ++     A    +    ME+D  
Sbjct: 708 SALEAWQEQWYDALLEAGLGGRASPAGALDALELLQNIKEKLQAADDLRQRIAAMERDL- 766

Query: 613 YLEQKYKSEFERFEEVQERCKVAEKEAKKATEL---ADRERAEAAAARKGKSEFENLAME 669
               +++ E E   E      +     + A  L     R R  AAAA K   E E    E
Sbjct: 767 ---ARFEEEVEALAEAVAPEMLGTPADETARALKQRLKRARDTAAAAEKLAEEIEEAEKE 823

Query: 670 RMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLES 729
                      ++  E + T L          EL A  + +     + +R   +E  L  
Sbjct: 824 V----SEAAAALDEAEARLTALLRAARCTTIEELLAAVERSDTYRELRKRIAALERTLVR 879

Query: 730 NN----------EQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQE 779
                       E  A    +L   LE   R           L+ EV +A+ +L  M   
Sbjct: 880 AGGGLSLEALVAEAAALDPDELPARLEELARDIEELEEELNELAQEVGAAKQELARMDGG 939

Query: 780 LTKARLNE 787
            T A L  
Sbjct: 940 STAAELEA 947

This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif. Length = 1118

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 46.9 bits (111), Expect = 6e-05
 Identities = 68/339 (20%), Positives = 133/339 (39%), Gaps = 25/339 (7%)

Query: 467 TAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAI-------VQERTSKEM 519
                +L    E       ++EE K +      +AK ALE   +        +     + 
Sbjct: 173 KERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDY 232

Query: 520 QQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQ 579
            +  +   +     L +++EE++    ++E  E+ L  +  E K  E + +  E E+   
Sbjct: 233 LKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLL 292

Query: 580 KLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKS----------EFERFEEVQ 629
             E +EL  +L  +  +    E + +  E++   LE++ K           E +  E  +
Sbjct: 293 AKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKR 352

Query: 630 ERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKT 689
           E  +  E++ +K  E  ++   E  A +K +SE  + A +        + ++++ E ++ 
Sbjct: 353 EAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKE----EELELKNEEEKEA 408

Query: 690 DLTNEVNRIRESELEALSKVALLEARVEEREKEI--ESLLESNNEQRASTVKKLEDLLES 747
            L  E++   E  L+   K  L      E   E     L E   E     +K L+D LE 
Sbjct: 409 KLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLEL 468

Query: 748 ERRSRAAANA--MAERLSLEVQSAQAKLDEMQQELTKAR 784
           ++          +     LE+   + KL+E  Q+ +KAR
Sbjct: 469 KKSEDLLKETKLVKLLEQLELLLLRQKLEEASQKESKAR 507

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 46.3 bits (109), Expect = 9e-05
 Identities = 72/378 (19%), Positives = 152/378 (40%), Gaps = 21/378 (5%)

Query: 448  QKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEK 507
            +KA   +   E    +    A +A+ A A ++A  A+++ EE K+       E     E+
Sbjct: 1200 RKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEE 1259

Query: 508  AAIVQERTSKEMQQREDVLR-EEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAE 566
            A +      +   + E+  + +E      +K+ +  +KA + + A++         KA E
Sbjct: 1260 ARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADE 1319

Query: 567  SKMRSYEVEISSQKLETK--ELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFER 624
            +K ++ E +  +   + K  E  +  EA  A+A++   EA   E+     E+K +   ++
Sbjct: 1320 AKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379

Query: 625  FEEVQERC----------KVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVI 674
             +  +++           K AE++ KKA EL     A+  A    K   E    +     
Sbjct: 1380 ADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKK 1439

Query: 675  ERVQRQIESLERQKTDLTNEVNRIRESE----LEALSKVALLEARVEEREKEIESLLESN 730
                ++ +  +++  +        +++E     +   K A    + +E +K+ E   +  
Sbjct: 1440 AEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKA 1499

Query: 731  NEQR--ASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNET 788
            +E +  A   KK ++  ++E   +A     AE      ++ +A+  +   EL KA   E 
Sbjct: 1500 DEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAE--EL 1557

Query: 789  ALGSKLRAVSHGKRARAD 806
                + +     K+A  D
Sbjct: 1558 KKAEEKKKAEEAKKAEED 1575

Length = 2084

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 46.1 bits (109), Expect = 9e-05
 Identities = 58/350 (16%), Positives = 121/350 (34%), Gaps = 16/350 (4%)

Query: 495 GVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKE-----KATKIE 549
             A    K   ++        ++ + +    L E     L  KE+  K         K+E
Sbjct: 162 EAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLE 221

Query: 550 HAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQ 609
             E+ L  L   LK  E ++   +  +  ++ E +   ++LE          +E +  E+
Sbjct: 222 LEEENLLYLD-YLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEK 280

Query: 610 DKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAME 669
           +K   E++ K   +  EE++      E    +  ++ D E+ + +     K E E    +
Sbjct: 281 EKKLQEEELKLLAKEEEELKS-----ELLKLERRKVDDEEKLKESEKELKKLEKELK--K 333

Query: 670 RMAVIERVQRQIESLERQKTDLTNEVN---RIRESELEALSKVALLEARVEEREKEIESL 726
               IE ++++++ LE ++     E     +++E   +   ++   +    ER      L
Sbjct: 334 EKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKL 393

Query: 727 LESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLN 786
            E   E +    K+ + LLE   +         +     V+  +  L+  Q +LT+ +  
Sbjct: 394 KEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEE 453

Query: 787 ETALGSKLRAVSHGKRARADDYEAGVGSVQEMDTNDKVLRANKRSRSTTS 836
                 KL       +   D  +              +LR      S   
Sbjct: 454 LEKQALKLLKDKLELKKSEDLLKETKLVKLLEQLELLLLRQKLEEASQKE 503

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 44/190 (23%), Positives = 76/190 (40%), Gaps = 10/190 (5%)

Query: 497 AVREAKAALEKAAIVQERTSKEMQQREDVLREE----FSSTLAE------KEEEMKEKAT 546
           A  +A  A +      ER   E+   +DV R +        LAE      +EE  +EK  
Sbjct: 349 AAYKAYLAYKPKLEKVERKLPELGIWKDVERIKALVIRGYPLAEALSKVKEEERPREKEG 408

Query: 547 KIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARI 606
             E   + +T     +K  E  +   E E S  K E +EL  ++E + ++ + F RE R 
Sbjct: 409 TEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRD 468

Query: 607 MEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENL 666
             +    +  + +      +E++E+ K  E+  +K  EL    + E +         E L
Sbjct: 469 KVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLELSGKGTPVKVVEKL 528

Query: 667 AMERMAVIER 676
            +E +   E 
Sbjct: 529 TLEAIEEAEE 538

Length = 652

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 44.4 bits (105), Expect = 3e-04
 Identities = 48/235 (20%), Positives = 82/235 (34%), Gaps = 22/235 (9%)

Query: 585 ELSEKLEAVNAKAQSFEREARIMEQDKVYL---------EQKYKSEFERFEEVQERCKVA 635
           EL  +L AV+ +     RE R +   +  L         ++  ++   R  E + + + A
Sbjct: 746 ELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESA 805

Query: 636 EKEAKKATELADRERAEAAAARK---GKSEFENLAMERMAVIERVQRQIESLERQKTDLT 692
           E+E  +A   A    A    AR+     +   +L  +  A +E V   ++        L 
Sbjct: 806 ERELARAARKAAAAAAAWKQARRELERDAADLDLPTDPDA-LEAVGLALKRFGDHLHTLE 864

Query: 693 NEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSR 752
             V  +R +   A        A    R    ES      E  A    + E+     R   
Sbjct: 865 VAVRELRHAATRA--------AEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLE 916

Query: 753 AAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAVSHGKRARADD 807
            +  AM + +   +   +A L    +EL +      A   + R  +  KRA AD 
Sbjct: 917 ESVGAMVDEIRARLAETRAALASGGRELPRLA-EALATAEEARGRAEEKRAEADA 970

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 43.6 bits (103), Expect = 4e-04
 Identities = 46/229 (20%), Positives = 93/229 (40%), Gaps = 6/229 (2%)

Query: 534 LAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAV 593
           L + ++E+     KI   +     L  +LK+ E+++ S E ++     + K+L +++  +
Sbjct: 40  LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADL 99

Query: 594 NAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEA 653
           NA+  + E + R  EQ +   EQ   +             V+ ++A+++  LA    A  
Sbjct: 100 NARLNALEVQER--EQRRRLAEQ-LAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALN 156

Query: 654 AAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLE 713
            A  +     +    +  AV   +  +   L    ++   +  ++ +   E    +A L 
Sbjct: 157 PARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLN 216

Query: 714 ARVEEREKEIESLLESNNEQRASTV-KKLEDLLESERRSRAAANAMAER 761
           + +   +K++E L    NE R        E      R + AAA A A R
Sbjct: 217 SELSADQKKLEEL--RANESRLKNEIASAEAAAAKAREAAAAAEAAAAR 263

Length = 420

>gnl|CDD|219083 pfam06548, Kinesin-related, Kinesin-related

 Score = 43.7 bits (103), Expect = 4e-04
 Identities = 64/236 (27%), Positives = 110/236 (46%), Gaps = 25/236 (10%)

Query: 519 MQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLT-TLRLELKAAESKMRSYEVEIS 577
            Q R+  + E       +  E+ +E+ T+ E     LT  LR+EL+A  S     E+E+ 
Sbjct: 260 FQLRKSAIPESGDENAEKTLEKERERWTEAESKWISLTEELRVELEANRSLAEKLEMELE 319

Query: 578 SQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEK 637
           S+K  T+EL + L+      ++ +  ARI+EQ    L++KY    E+   + E      +
Sbjct: 320 SEKKCTEELKDALQ------RAMQGHARIIEQ-YAELQEKYNDLLEKHRRIME----GIE 368

Query: 638 EAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVN- 696
           + KKA   A  + A +  A    +E   L  ER    E ++++ +SL+ Q  D    V  
Sbjct: 369 DVKKAAAKAGVKGAGSRFANALAAELSALRAEREKERELLKKENKSLQIQLRDTAEAVQA 428

Query: 697 ------RIRESELEALS----KVALLEARVEEREKEIESLLESNNEQRASTVKKLE 742
                 R+RE+E EA +    +  L E   E+ +K+IE  L+  ++    T+K+  
Sbjct: 429 AGELLVRLREAE-EAATLAQERAMLAEQENEKLKKQIEK-LKRKHKMEIVTMKQYL 482

This family represents a region within kinesin-related proteins from higher plants. Many family members also contain the pfam00225 domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants. Length = 488

>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional

 Score = 43.5 bits (103), Expect = 4e-04
 Identities = 47/268 (17%), Positives = 94/268 (35%), Gaps = 42/268 (15%)

Query: 341 LVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLAD 400
           L K  I ++  +  +L +K   I+  +K   K +E+  +   E + R  +  ++  + A 
Sbjct: 171 LNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAK 230

Query: 401 DYTSRINNLQGE----NISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMED-QV 455
              + I  L  E     + + + S++L+K    L    +  K K +Q     K  E   V
Sbjct: 231 TIKAEIEELTDELLNLVMDIEDPSAALNK----LNTAAAKIKSKIEQFQKVIKMYEKGGV 286

Query: 456 CSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERT 515
           C                      Q +S   +                   +K   +Q   
Sbjct: 287 CP------------------TCTQQISEGPDRIT-------------KIKDKLKELQHSL 315

Query: 516 SKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVE 575
            K     +++  EE      E+ +++ E   KI   +Q L TL  + K  ++ +   + E
Sbjct: 316 EKLDTAIDEL--EEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAE 373

Query: 576 ISSQKLETKELSEKLEAVNAKAQSFERE 603
                 E  +L ++L+ +        +E
Sbjct: 374 FVDNAEELAKLQDELDKIVKTKSELVKE 401

Length = 562

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 43.0 bits (101), Expect = 8e-04
 Identities = 42/260 (16%), Positives = 90/260 (34%), Gaps = 7/260 (2%)

Query: 528 EEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELS 587
           EE ++   EK ++ +     IE  E     +    +    +++  E    + +    +  
Sbjct: 160 EEEAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEK 219

Query: 588 EKLEAVNAKA-------QSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAK 640
            +LE  N          +      + + +D+    +  K E E+ EE+  +     KE +
Sbjct: 220 LELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEE 279

Query: 641 KATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRE 700
           K  +L + E    A   +           R    E   ++ E   ++      +     E
Sbjct: 280 KEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIE 339

Query: 701 SELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAE 760
              + L ++ +     EE E+++E L E   +     + K +   E    +        E
Sbjct: 340 ELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELE 399

Query: 761 RLSLEVQSAQAKLDEMQQEL 780
             + E + A+  L+  +QE 
Sbjct: 400 LKNEEEKEAKLLLELSEQEE 419

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like

 Score = 42.7 bits (100), Expect = 8e-04
 Identities = 68/337 (20%), Positives = 137/337 (40%), Gaps = 18/337 (5%)

Query: 430 LKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEE 489
           L+N++   +R+ + ++ K  A+E  V      ++SR    E  L  + E+    +E+ +E
Sbjct: 141 LQNQLEGCQRERNDLMKKFLALEGDVSD----MRSRIEQLETALRHSTEKTEELEEQHKE 196

Query: 490 WKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIE 549
            +        E  A L + A  Q+R   E++Q    L ++        E     +A    
Sbjct: 197 AQSSSESMSAERNALLAQRAENQQRI-LELEQDIQTLTQKKQENDRVLEGTQDIEAEL-- 253

Query: 550 HAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQ 609
             E+    L+  LK    + R  E E    +LE ++L E L  +  + +S +++A ++ +
Sbjct: 254 --ERMKGELKQRLKKMTIQRRDEETERIDLQLENEQLHEDLRTLQERLESSQQKAGLLGE 311

Query: 610 D---KVYLEQKYKSEFE--RFEEVQERCKVAEKEAKKATELADRERAEAA---AARKGKS 661
           +      L     +E    R E  Q   ++++         +   +       +A   K 
Sbjct: 312 ELASLGSLRDHTIAELHQSRLESAQMSLQLSQLNLALKEGQSQWAQERETLRQSAEADKD 371

Query: 662 EFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREK 721
             + L+ E + + E +Q +    E+ + +L  E +  R    E   +++ L + +   +K
Sbjct: 372 RIQKLSAELLKLEEWLQEERSQREKLEVELGIEKDCNRVQLSENRRELSELRSALRVLQK 431

Query: 722 EIESLLESNNEQRASTVKKLEDLLESERRSRAAANAM 758
           E E L E   E     ++ LE  L+ E   + A +A 
Sbjct: 432 EKEQLQEEKQELL-DYIRVLELRLDKEADEKWAEDAA 467

Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region. Length = 546

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.8 bits (100), Expect = 9e-04
 Identities = 80/400 (20%), Positives = 165/400 (41%), Gaps = 16/400 (4%)

Query: 361  RSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKS 420
            ++     + LK   +D + + ++   R D+A  +    A++          E    R+  
Sbjct: 1063 KAHVGQDEGLKPSYKDFD-FDAKEDNRADEATEEAFGKAEEAKKTETGKAEEA---RKAE 1118

Query: 421  SSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQA 480
             +  K  D+ K E +       +    +KA + +        +    A EAR A   ++A
Sbjct: 1119 EAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKA 1178

Query: 481  LSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEE 540
             +A++  E  K +      +A+ A       +ER ++E ++ ED  + E      +K EE
Sbjct: 1179 EAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAE----AVKKAEE 1234

Query: 541  MKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSF 600
             K+ A + + AE+      +  K  E++M  +    ++ K E    +++L+    K ++ 
Sbjct: 1235 AKKDAEEAKKAEEERNNEEIR-KFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKA- 1292

Query: 601  EREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADR--ERAEAAAARK 658
              EA+  E+ K   E K K+E  +  +  E  K AE+  KKA     +  E  +AA A K
Sbjct: 1293 -DEAKKAEEKKKADEAKKKAEEAK--KADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAK 1349

Query: 659  GKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEE 718
             ++E      E          + +   ++K D   +    ++   EA  K    + + +E
Sbjct: 1350 AEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADE 1409

Query: 719  REKEIESLLESNN-EQRASTVKKLEDLLESERRSRAAANA 757
             +K   +  +++  +++A   KK ++  +    ++ A  A
Sbjct: 1410 LKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEA 1449

Length = 2084

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 42.8 bits (101), Expect = 0.001
 Identities = 54/323 (16%), Positives = 120/323 (37%), Gaps = 54/323 (16%)

Query: 511 VQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMR 570
           V  ++    Q  E  + +  +    +K      +  K++   + L +L L L+    ++ 
Sbjct: 217 VPPKSRLNPQDVEHWIADIQALRAIQKVAP---EIEKLQEDFEQLLSLELRLQHLHGELV 273

Query: 571 SYEVEISSQKLETKELSEKLE----------------------AVNAKAQSFEREARIME 608
           + E  ++ ++ E +E   +L                       A NAK  +   E  ++E
Sbjct: 274 ADEERLAEEQEERQEAKNRLRQQLRTLEDQLKEARDELNQELSAANAKLAADRSELELLE 333

Query: 609 QDKVYLEQ----KYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFE 664
             K   E     + +++ ++   ++   +  E      T             +  + ++E
Sbjct: 334 DQKGAFEDADIEQLQADLDQLPSIRSELEEVEARLDALTG----------KHQDVQRKYE 383

Query: 665 NLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIE 724
            L   +  + E+++R +E    +   +  E +R + +  E L   AL     ++ E    
Sbjct: 384 RL---KQKIKEQLERDLEKNNERLAAIREEKDRQKAAIEEDLQ--ALESQLRQQLEAGKL 438

Query: 725 SLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKAR 784
                N E+      +LE  L   ++   +A A  E    +++     L++ Q+E  +A 
Sbjct: 439 EF---NEEE-----YELELRLGRLKQRLDSATATPE-ELEQLEINDEALEKAQEEQEQAE 489

Query: 785 LNETALGSKLRAVSHGKRARADD 807
            N   L S+LR +   +R  A +
Sbjct: 490 ANVEQLQSELRQLRK-RRDEALE 511

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 42.6 bits (101), Expect = 0.001
 Identities = 27/127 (21%), Positives = 62/127 (48%), Gaps = 9/127 (7%)

Query: 431 KNEISDWKRKYDQVLT----KQKAMEDQVCSEIEVLKSRSTAAEARLAA--AREQALSAQ 484
           K E+   + + ++ L     + + +E ++    E L  +  + + +      +E+ LS +
Sbjct: 57  KEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNK 116

Query: 485 E-EVEEWKRKYGVAVREAKAALEKAAIVQERTSKE--MQQREDVLREEFSSTLAEKEEEM 541
           E  ++E + +    + E +  LE+ + + +  +KE  +++ E+  R E +  + E EEE 
Sbjct: 117 EKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEA 176

Query: 542 KEKATKI 548
           KE+A K 
Sbjct: 177 KEEADKK 183

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated

 Score = 42.2 bits (100), Expect = 0.001
 Identities = 43/272 (15%), Positives = 91/272 (33%), Gaps = 27/272 (9%)

Query: 482 SAQEEVEEWKRKYGVAVREA---KAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKE 538
            + E + + +             ++ L K   ++E   K   +  + L ++    L + E
Sbjct: 40  LSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIE 99

Query: 539 EEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQ 598
           +E+KE   +I   E  +  L  E++  E    ++++++S   L   +    +        
Sbjct: 100 KEIKELEEEISELENEIKELEQEIERLE-PWGNFDLDLS--LLLGFKYV-SVFVGTVPED 155

Query: 599 SFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARK 658
             E      + + V         +     V  +    E   +   EL            +
Sbjct: 156 KLEELKLESDVENVEYI-STDKGYVYVVVVVLK----ELSDEVEEELKKLGFERLELEEE 210

Query: 659 GK-----SEFENLAMERMAVIERVQRQIESLERQKTDL---TNEVNRIRESELEALSK-- 708
           G       E +    E     E +  +++ L ++  +      E   I     EALSK  
Sbjct: 211 GTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKFL 270

Query: 709 ----VALLEARV-EEREKEIESLLESNNEQRA 735
                  +E  V E+R K+++ L++      A
Sbjct: 271 KTDKTFAIEGWVPEDRVKKLKELIDKATGGSA 302

Length = 646

>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 60/340 (17%), Positives = 127/340 (37%), Gaps = 36/340 (10%)

Query: 395 KKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQ 454
           K +L     S I  L+ E     EK   L++ +  L+NE+ + +R  + +  K ++    
Sbjct: 200 KSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGD 259

Query: 455 VCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQER 514
           +  E E L+ +    EA   A R Q                 A       L    +   +
Sbjct: 260 LFEEREQLERQLKEIEAARKANRAQLREL-------------AADPLPLLLIPNLLDSTK 306

Query: 515 T--SKEMQ-QREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRS 571
               KE Q Q+  + +EE      E  E + + A   EH ++    L    K A +    
Sbjct: 307 AQLQKEEQSQQNQLTQEELEERDKELLESLPKLALPAEHVKEIAAELAEIDKPATTDSEI 366

Query: 572 YEVEISSQKLETKELSEKLE-AVNAKAQSFEREARIMEQDKVYLEQKYKS--EFERFEEV 628
                 S+  + + L ++++  +        +E R +E++   +++K  +    E+  ++
Sbjct: 367 PHRLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQL 426

Query: 629 QERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQK 688
            E    A+ E  ++    +    +    ++               IE +++ ++   +QK
Sbjct: 427 LEELGEAQNELFRSEAEIEELLRQLETLKEA--------------IEALRKTLDEKTKQK 472

Query: 689 TDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLE 728
            +       I  ++    +K  L E R +  E++++ L E
Sbjct: 473 INAFELERAITIAD---KAKKTLKEFREKLLERKLQQLEE 509

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria [DNA metabolism, Restriction/modification]. Length = 650

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 41.7 bits (99), Expect = 0.001
 Identities = 35/182 (19%), Positives = 79/182 (43%), Gaps = 22/182 (12%)

Query: 368 KLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTV 427
           K+ + +++++E      L+         KK A      +   + E   LR +        
Sbjct: 27  KIAEAKIKEAEEEAKRILEEAKKEAEAIKKEA------LLEAKEEIHKLRNE-------- 72

Query: 428 DSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEV 487
              + E+ + + +  ++  +    E+ +  ++E+L+ R    E  L    ++    Q+E+
Sbjct: 73  --FEKELRERRNELQKLEKRLLQKEENLDRKLELLEKR----EEELEKKEKELEQKQQEL 126

Query: 488 EEWKRKYGVAVREAKAALEKAAIVQERTSKEM--QQREDVLREEFSSTLAEKEEEMKEKA 545
           E+ + +    + E    LE+ + +    +KE+  ++ E+  R E +  + E EEE KE+A
Sbjct: 127 EKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEA 186

Query: 546 TK 547
            K
Sbjct: 187 DK 188

Length = 520

>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 33/192 (17%), Positives = 72/192 (37%), Gaps = 27/192 (14%)

Query: 648 RERAEAAAARKGKS------EFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRES 701
           +E AE AA            E      +    + +   ++ +L      L N + ++ +S
Sbjct: 43  QEEAEPAAEEAELQAELIQQELAIND-QLSQALNQQTERLNALASDDRQLANLLLQLLQS 101

Query: 702 ELEALSKVALLEARVEE---REKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAM 758
                 ++A+L   +       +++  L E+   Q    V +  D L++E+    A    
Sbjct: 102 SRTIREQIAVLRGSLLLSRILLQQLGPLPEAGQPQEQFEVTQERDALQAEKAYINALEGQ 161

Query: 759 AERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAVSHGKRARADDYEAGVGSVQEM 818
           AE+L+ EV+    ++ + ++EL        +L S+  A+S             +   Q  
Sbjct: 162 AEQLTAEVRDILDQILDTRRELL------NSLLSQREAIS-----------LQLNQQQLS 204

Query: 819 DTNDKVLRANKR 830
             +D++     +
Sbjct: 205 AASDELRSLLHQ 216

Length = 835

>gnl|CDD|205692 pfam13514, AAA_27, AAA domain

 Score = 41.7 bits (98), Expect = 0.002
 Identities = 66/357 (18%), Positives = 120/357 (33%), Gaps = 62/357 (17%)

Query: 458 EIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAI---VQER 514
           E++ L+ +  AA  RL    ++    +  +   +  +      A   L  A +   + ER
Sbjct: 555 ELQSLRQQEEAARRRLEQLEKELEVLELALAALREAWQAQWAAAGLPLTPAEMEDWLAER 614

Query: 515 -TSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYE 573
            T++E  +     R E  + L                  +    LR  LKA         
Sbjct: 615 ATAREQVRAYFKARAELDALLDR--------------RARLRAALRAALKA--------- 651

Query: 574 VEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCK 633
               +  L  +EL+E LE     A+    EA      K  L+++ +      EE +ER  
Sbjct: 652 ---VAIVLPGEELAELLE----LARQLLEEAEKQAARKASLDERLRDAERALEEAEERHD 704

Query: 634 VAEKEAKKA--------TELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLE 685
            A+   +           E     RA  A A       +N+  E++   + ++++I ++E
Sbjct: 705 EAQSALEAWQEQWYDALLEAGLGGRASPAGALDALELLQNI-KEKLQAADDLRQRIAAME 763

Query: 686 RQKTDLTNEVNRIRE---------------SELEALSKVALLEARVEEREKE-IESL--- 726
           R       EV  + E                 L+   K A   A   E+  E IE     
Sbjct: 764 RDLARFEEEVEALAEAVAPEMLGTPADETARALKQRLKRARDTAAAAEKLAEEIEEAEKE 823

Query: 727 LESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKA 783
           +            +L  LL + R +       A   S   +  + ++  +++ L +A
Sbjct: 824 VSEAAAALDEAEARLTALLRAARCTTIEELLAAVERSDTYRELRKRIAALERTLVRA 880

This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif. Length = 1118

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 42.3 bits (99), Expect = 0.002
 Identities = 55/336 (16%), Positives = 115/336 (34%), Gaps = 21/336 (6%)

Query: 361 RSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENI-SLREK 419
             +  +++ LK Q    +    + L+ Y      + +  +        L  E I  L+E 
Sbjct: 187 AELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQEL 246

Query: 420 SSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQ 479
                + ++S K E+   +    QVL + K  E +   +                   E+
Sbjct: 247 LRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQ------------------EEE 288

Query: 480 ALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEE 539
                +E EE K +     R      EK    ++   K  ++     +EE      E +E
Sbjct: 289 LKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKL-EKELKKEKEEIEELEKELKE 347

Query: 540 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQS 599
              ++  + E  EQ         +  E  +   ++E        K   E+LE  N + + 
Sbjct: 348 LEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKE 407

Query: 600 FEREARIMEQDKVYLEQKYKSEFERFEEVQERC-KVAEKEAKKATELADRERAEAAAARK 658
            +    + EQ++  L+++ K E +  EE++E       K  ++  EL  +         +
Sbjct: 408 AKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLE 467

Query: 659 GKSEFENLAMERMAVIERVQRQIESLERQKTDLTNE 694
            K   + L   ++  +      +   ++ +     E
Sbjct: 468 LKKSEDLLKETKLVKLLEQLELLLLRQKLEEASQKE 503

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 41.9 bits (99), Expect = 0.002
 Identities = 80/358 (22%), Positives = 132/358 (36%), Gaps = 60/358 (16%)

Query: 457 SEIEVLKSRSTAAEARLAAAREQ------ALSAQEEVEEWKRKYGVAVREAKAALEKAAI 510
            E+  L    +  E    AA +       AL  QE++E    +Y   + E +  LE+   
Sbjct: 314 RELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIE----RYQADLEELEERLEEQNE 369

Query: 511 VQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCL---TTLRLELKAAES 567
           V     +E  ++++       +     EEE+ E  +++   +Q L    T  ++ + A  
Sbjct: 370 V----VEEADEQQEENEARAEAA----EEEVDELKSQLADYQQALDVQQTRAIQYQQAVQ 421

Query: 568 KMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEE 627
            +   +       L      + LE   AK Q    E   +EQ K+ + Q   S+FE    
Sbjct: 422 ALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQ-KLSVAQAAHSQFE---- 476

Query: 628 VQERCKVAEKEAKKATELADRERAEAAA------ARKGKSEFENLAMERMAV--IERVQR 679
                  A +  +K      R  A   A       R+ +   E L   RM +  +E+  R
Sbjct: 477 ------QAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLR 530

Query: 680 QIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESL---LESNNEQRAS 736
           Q +  ER   +    + +        L     LE   EE E  +ESL   +    E+R +
Sbjct: 531 QQQRAERLLAEFCKRLGK-------NLDDEDELEQLQEELEARLESLSESVSEARERRMA 583

Query: 737 TVKKLEDLLE--SERRSRA----AANAMAERLS----LEVQSAQAKLDEMQQELTKAR 784
             ++LE L        +RA    AA     RL      E + +Q   + MQQ L + R
Sbjct: 584 LRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERER 641

Length = 1486

>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family

 Score = 41.1 bits (97), Expect = 0.002
 Identities = 44/194 (22%), Positives = 80/194 (41%), Gaps = 33/194 (17%)

Query: 624 RFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEF--ENLAMERMAVIERVQRQI 681
             +        AE E++     A+  R  A A  +   EF  + L+ E  AV E ++ Q 
Sbjct: 73  ELDATDVEADAAELESQVLRLEAEVARLRAEADSQAAIEFPDDLLSAEDPAVPELIKGQQ 132

Query: 682 ESLERQKTDLTNEVNRI------RESELEAL-SKVALLEARVEEREKEIES--------- 725
              E +K+ L  ++  I       E+EL  L +++  L  ++E   +E+E+         
Sbjct: 133 SLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGL 192

Query: 726 -----LLESNNEQRA---------STVKKLE-DLLESERRSRAAANAMAERLSLEVQSAQ 770
                LLE   E+           + ++ L+  + E +   +       E +  E+  AQ
Sbjct: 193 VSRLELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQ 252

Query: 771 AKLDEMQQELTKAR 784
           A+L E+++ L KAR
Sbjct: 253 ARLAELRERLNKAR 266

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 423

>gnl|CDD|178768 PLN03229, PLN03229, acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

 Score = 41.0 bits (96), Expect = 0.003
 Identities = 68/346 (19%), Positives = 136/346 (39%), Gaps = 45/346 (13%)

Query: 457 SEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTS 516
            E+E LK +   A+   +   E AL+  E +E+ K++  +   EA  A+           
Sbjct: 436 GEVEKLKEQILKAKESSSKPSELALN--EMIEKLKKEIDLEYTEAVIAMG---------- 483

Query: 517 KEMQQREDVLREEFSSTLAEKE---EEMKEKATKI-EHAEQCLTTL--RLELKAAESKMR 570
             +Q+R + LREEFS   ++ +     + EK  K+ +   + L+     L LK     + 
Sbjct: 484 --LQERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLN 541

Query: 571 SYEVEISSQKLETKELSEKLEA-VNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQ 629
             E   +    E K  +EKL+A +N K +       I E+ +    +   S     +E+ 
Sbjct: 542 --EFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIKEKMEALKAEVASSGASSGDELD 599

Query: 630 ERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKT 689
           +  K   ++ KK  EL      ++          +N           +Q +IESL  +  
Sbjct: 600 DDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQEKIESLNEEIN 659

Query: 690 DLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESER 749
                       ++E + + + L++++E  + E+    ++ +      ++ LE   + ++
Sbjct: 660 -----------KKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQ--QIKQ 706

Query: 750 RSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLR 795
           +   A N+            + K +E++ EL  AR         L+
Sbjct: 707 KIAEALNSSE---------LKEKFEELEAELAAARETAAESNGSLK 743

Length = 762

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 40.8 bits (95), Expect = 0.003
 Identities = 38/203 (18%), Positives = 87/203 (42%), Gaps = 13/203 (6%)

Query: 454 QVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQE 513
               E    ++   AA + L  AR++  + ++E+   ++    A +E     ++A  +Q 
Sbjct: 92  TAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQT 151

Query: 514 RTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYE 573
           R     +QR   L  +  S  A +++        ++ +   L +  L+LK   +++    
Sbjct: 152 RLKTLAEQRRQ-LEAQAQSLQASQKQ--------LQASATQLKSQVLDLKLRSAQIEQEA 202

Query: 574 VEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCK 633
             ++++    +  +E+L    A AQ  +    I ++D   + QK +    R E+++ER +
Sbjct: 203 QNLATRANAAQARTEELARRAAAAQ--QTAQAIQQRDAQ-ISQKAQQIAARAEQIRERER 259

Query: 634 VAEKEAKKATELADRERAEAAAA 656
              +  + A    ++E A+  A 
Sbjct: 260 QL-QRLETAQARLEQEVAQLEAY 281

Length = 499

>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein

 Score = 41.1 bits (96), Expect = 0.003
 Identities = 45/186 (24%), Positives = 89/186 (47%), Gaps = 23/186 (12%)

Query: 416 LREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAA 475
           LR + S L+    SLK+++   K++ D + TK  +M      + + ++S     E RL +
Sbjct: 432 LRNQISLLTSLERSLKSDLGQLKKENDMLQTKLNSMVSAKQKDKQSMQS----MEKRLKS 487

Query: 476 AREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLA 535
             +  ++A++++ E K++       A  A  +AA  +E  ++ ++Q     +++    + 
Sbjct: 488 EADSRVNAEKQLAEEKKRKKEEEETAARAAAQAAASREECAESLKQA----KQDLEMEIK 543

Query: 536 EKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNA 595
           + E ++K K       E+C     LE +A E  +R Y+    S+K ET+ L   L+A+  
Sbjct: 544 KLEHDLKLK------EEECRM---LEKEAQE--LRKYQ---ESEK-ETEVLMSALQAMQD 588

Query: 596 KAQSFE 601
           K    E
Sbjct: 589 KNLMLE 594

This entry is a highly conserved protein present in eukaryotes. Length = 680

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 40.7 bits (95), Expect = 0.004
 Identities = 60/342 (17%), Positives = 125/342 (36%), Gaps = 8/342 (2%)

Query: 351 SERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQ 410
              + L++    ++     LK+Q + +  Y     K   +  N              +L 
Sbjct: 184 ENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLL 243

Query: 411 GENISLREKSSSLSKTVDSLKNEISDWKRKYD----QVLTKQKAMEDQVCSEIEVLKSRS 466
            E +   ++    SK     + EI     K +    +    Q+     +  E E LKS  
Sbjct: 244 QELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSEL 303

Query: 467 TAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVL 526
              E R     E+   +++E+++ +++     +E    LEK     E   +  ++ E+ L
Sbjct: 304 LKLERRKVDDEEKLKESEKELKKLEKEL-KKEKEEIEELEKELKELEIKREAEEEEEEQL 362

Query: 527 REEFSSTLAEKEEEMKEKATKIEH--AEQCLTTLRLELKAAESKMRSYEVEISSQKLET- 583
            +        +EE + +K  + E   +   L    LELK  E K     +E+S Q+ +  
Sbjct: 363 EKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLL 422

Query: 584 KELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKAT 643
           KE  ++   +  + +      +    ++    +K   +  + +   ++ +   KE K   
Sbjct: 423 KEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSEDLLKETKLVK 482

Query: 644 ELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLE 685
            L   E        +  S+ E+ A E +AV+  + +    L 
Sbjct: 483 LLEQLELLLLRQKLEEASQKESKAREGLAVLLALIKDGVGLR 524

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 40.9 bits (96), Expect = 0.004
 Identities = 73/385 (18%), Positives = 124/385 (32%), Gaps = 69/385 (17%)

Query: 374 LEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGEN-ISLREKSSSLSKTVDSLKN 432
           LE  + Y+ + L+R +      +     Y       +      LR +++ L         
Sbjct: 229 LEQLDEYR-DELERLEALERALRNFLQRY-------RRYARTMLRRRATRLRSAQTQYDQ 280

Query: 433 EISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKR 492
              D  R  D++ T ++  E ++ +  E L+  + A   RL A +        E  E  R
Sbjct: 281 LSRDLGRARDELETAREE-ERELDARTEALEREADALRTRLEALQGSPAYQDAEELERAR 339

Query: 493 KYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKA------- 545
               A++ A A   +A    E   +E ++R D           E     ++ A       
Sbjct: 340 ADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLARAAERAG 399

Query: 546 -TKIEHAEQCLTTLRLELKA--AESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFER 602
            +    AE        EL+   A    R     + +Q+ E   L  + + V  +A++   
Sbjct: 400 LSPAHTAEPDAALAAQELQELGALDARRQDADRVIAQRSEQVALLRRRDDVADRAEATHA 459

Query: 603 EARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSE 662
            AR                  R +E+ E  + A   A+ A E   RE A  A     +++
Sbjct: 460 AAR-----------------ARRDELDEEAEQAAARAELADEAVHREGARLAWVDAWQAQ 502

Query: 663 FENL-------------------------AMERMAVIERVQRQIESLERQKTDLTNEVNR 697
              L                         A  R+AV   VQ   + L R++  L      
Sbjct: 503 LRELTILAVDDQPGALADLDSWDALLQGEAPVRVAVYSAVQPLADELTRERAALRLA--- 559

Query: 698 IRESELEALSKVALLEARVEEREKE 722
             E  LE   +   L    E  E+ 
Sbjct: 560 --EEVLE--EERDALRTERERLEQG 580

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like

 Score = 40.7 bits (95), Expect = 0.004
 Identities = 59/336 (17%), Positives = 136/336 (40%), Gaps = 29/336 (8%)

Query: 409 LQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTA 468
           L+G+   +R +   L   +     +  + + ++ +  +  ++M     +E   L ++   
Sbjct: 162 LEGDVSDMRSRIEQLETALRHSTEKTEELEEQHKEAQSSSESM----SAERNALLAQRAE 217

Query: 469 AEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKA-AIVQERTSKEMQQREDVL- 526
            + R+    +   +  ++ +E  R       + +A LE+    +++R  K   QR D   
Sbjct: 218 NQQRILELEQDIQTLTQKKQENDRVLEGTQ-DIEAELERMKGELKQRLKKMTIQRRDEET 276

Query: 527 -REEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKE 585
            R +      +  E+++    ++E ++Q    L  EL +  S       E+   +LE+ +
Sbjct: 277 ERIDLQLENEQLHEDLRTLQERLESSQQKAGLLGEELASLGSLRDHTIAELHQSRLESAQ 336

Query: 586 LSEKLEAVNAKAQ------SFEREA--RIMEQDKVYLEQKYKSEFERFEE-VQE------ 630
           +S +L  +N   +      + ERE   +  E DK  + QK  +E  + EE +QE      
Sbjct: 337 MSLQLSQLNLALKEGQSQWAQERETLRQSAEADKDRI-QKLSAELLKLEEWLQEERSQRE 395

Query: 631 --RCKVAEKEAKKATELADRERAEA---AAARKGKSEFENLAMERMAVIERVQRQIESLE 685
               ++  ++     +L++  R  +   +A R  + E E L  E+  +++ ++     L+
Sbjct: 396 KLEVELGIEKDCNRVQLSENRRELSELRSALRVLQKEKEQLQEEKQELLDYIRVLELRLD 455

Query: 686 RQKTDLTNEVNRIRESELEALSKVALLEARVEEREK 721
           ++  +   E     E     L + A ++      E 
Sbjct: 456 KEADEKWAEDAATCEDAKSYLHRAAYIDLLDSIDES 491

Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region. Length = 546

>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional

 Score = 40.5 bits (95), Expect = 0.004
 Identities = 36/156 (23%), Positives = 64/156 (41%), Gaps = 9/156 (5%)

Query: 618 YKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAM--ERMAVIE 675
            K      +E +   + A+KEA++  E A  E  E     + +   E      E     E
Sbjct: 25  LKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEE 84

Query: 676 RVQRQIESLERQKTDLTNEVNRI--RESELEA-LSKVALLEARVEEREKEIESLLESNNE 732
           R+ ++ E L+ +   L N  N++  RE  L A   ++  LE +++     +  L  +  +
Sbjct: 85  RLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGL--TPEQ 142

Query: 733 QRASTVKKLEDLLESERRSRAAANAMAERLSLEVQS 768
            R   +K L+  LE E+  R     + E   LE + 
Sbjct: 143 ARKLLLKLLDAELEEEKAQR--VKKIEEEADLEAER 176

Length = 508

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	910
PF02841	297	GBP_C: Guanylate-binding protein, C-terminal domai	100.0
PF02263	260	GBP: Guanylate-binding protein, N-terminal domain;	99.97
KOG2037	552	consensus Guanylate-binding protein [General funct	99.89
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.87
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.86
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	99.76
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	99.74
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	99.71
KOG2037	552	consensus Guanylate-binding protein [General funct	99.62
PRK02224	880	chromosome segregation protein; Provisional	99.54
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.43
PRK03918	880	chromosome segregation protein; Provisional	99.42
PRK03918	880	chromosome segregation protein; Provisional	99.42
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.42
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.4
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.39
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	99.33
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	99.29
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.27
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.27
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	99.27
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.23
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.2
KOG0996	1293	consensus Structural maintenance of chromosome pro	99.15
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	99.15
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	99.12
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	99.12
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	99.08
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	99.08
KOG0996	1293	consensus Structural maintenance of chromosome pro	99.04
PRK04778	569	septation ring formation regulator EzrA; Provision	99.03
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	99.02
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	99.02
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	99.01
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	98.96
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.95
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.86
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.86
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.84
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.8
KOG0971	1243	consensus Microtubule-associated protein dynactin	98.78
PRK04778	569	septation ring formation regulator EzrA; Provision	98.72
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.7
KOG0933	1174	consensus Structural maintenance of chromosome pro	98.65
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.64
PRK04863	1486	mukB cell division protein MukB; Provisional	98.62
KOG0971	1243	consensus Microtubule-associated protein dynactin	98.56
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	98.54
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	98.52
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	98.52
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	98.52
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.51
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	98.5
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.49
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	98.44
PRK04863	1486	mukB cell division protein MukB; Provisional	98.34
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	98.3
KOG0963	629	consensus Transcription factor/CCAAT displacement	98.22
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	98.21
KOG0964	1200	consensus Structural maintenance of chromosome pro	98.19
KOG0964	1200	consensus Structural maintenance of chromosome pro	98.15
PHA02562	562	46 endonuclease subunit; Provisional	98.15
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	98.14
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	98.14
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.09
KOG1003	205	consensus Actin filament-coating protein tropomyos	98.08
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	98.04
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	98.03
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	98.02
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.98
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.97
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.95
PRK11637	428	AmiB activator; Provisional	97.93
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.93
KOG0963	629	consensus Transcription factor/CCAAT displacement	97.93
KOG4673	961	consensus Transcription factor TMF, TATA element m	97.91
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	97.91
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.89
PRK11637	428	AmiB activator; Provisional	97.88
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.87
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	97.84
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.83
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	97.8
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.79
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.75
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	97.74
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	97.73
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	97.68
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	97.65
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	97.64
COG4942	420	Membrane-bound metallopeptidase [Cell division and	97.64
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.62
KOG1003	205	consensus Actin filament-coating protein tropomyos	97.61
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	97.6
PF05879	742	RHD3: Root hair defective 3 GTP-binding protein (R	97.6
KOG4673	961	consensus Transcription factor TMF, TATA element m	97.54
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	97.5
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	97.48
KOG0018	1141	consensus Structural maintenance of chromosome pro	97.46
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	97.45
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	97.44
PRK11281	1113	hypothetical protein; Provisional	97.4
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.36
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.35
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	97.32
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	97.2
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.2
PF14662	193	CCDC155: Coiled-coil region of CCDC155	97.12
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	97.1
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	97.09
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	97.08
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	97.06
COG4372	499	Uncharacterized protein conserved in bacteria with	97.0
PRK09039	343	hypothetical protein; Validated	96.9
COG4477	570	EzrA Negative regulator of septation ring formatio	96.86
PF02841	297	GBP_C: Guanylate-binding protein, C-terminal domai	96.79
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.78
PF14662	193	CCDC155: Coiled-coil region of CCDC155	96.77
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	96.75
PRK09039	343	hypothetical protein; Validated	96.74
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.68
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.54
KOG0018	1141	consensus Structural maintenance of chromosome pro	96.51
COG4477	570	EzrA Negative regulator of septation ring formatio	96.5
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	96.46
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.44
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	96.42
COG4942	420	Membrane-bound metallopeptidase [Cell division and	96.37
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	96.18
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	96.18
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	96.18
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	96.1
COG4372	499	Uncharacterized protein conserved in bacteria with	96.09
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	95.97
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	95.89
PF13514	1111	AAA_27: AAA domain	95.89
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	95.71
PRK10929	1109	putative mechanosensitive channel protein; Provisi	95.52
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	95.51
PRK10929	1109	putative mechanosensitive channel protein; Provisi	95.47
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	95.46
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	95.4
KOG2203	772	consensus GTP-binding protein [General function pr	95.32
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	95.31
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	95.31
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	95.26
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	95.24
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	95.19
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	95.06
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	95.05
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	94.98
PRK10698	222	phage shock protein PspA; Provisional	94.97
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	94.8
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	94.79
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	94.66
PF14073	178	Cep57_CLD: Centrosome localisation domain of Cep57	94.65
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	94.6
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	94.47
COG5185	622	HEC1 Protein involved in chromosome segregation, i	94.29
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	94.23
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	93.93
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	93.89
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	93.84
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	93.65
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	93.54
COG4026	290	Uncharacterized protein containing TOPRIM domain,	93.53
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	93.44
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	93.3
KOG0249	916	consensus LAR-interacting protein and related prot	93.26
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	93.2
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	93.18
KOG0979	1072	consensus Structural maintenance of chromosome pro	92.96
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	92.92
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	92.76
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	92.59
PF14073	178	Cep57_CLD: Centrosome localisation domain of Cep57	92.56
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	92.53
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	92.44
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	92.37
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	92.23
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	92.09
PF13514	1111	AAA_27: AAA domain	92.06
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	91.93
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	91.91
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	91.88
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	91.6
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.6
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	91.55
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	91.12
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	91.07
COG2433	652	Uncharacterized conserved protein [Function unknow	91.04
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	91.03
COG5185	622	HEC1 Protein involved in chromosome segregation, i	90.98
KOG1937	521	consensus Uncharacterized conserved protein [Funct	90.89
KOG2991	330	consensus Splicing regulator [RNA processing and m	90.85
PRK15422	79	septal ring assembly protein ZapB; Provisional	90.79
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	90.03
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	89.83
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	89.65
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	89.65
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	89.4
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	89.27
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	89.19
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	89.17
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	88.79
KOG0249	916	consensus LAR-interacting protein and related prot	88.78
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	88.77
COG2433	652	Uncharacterized conserved protein [Function unknow	88.71
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	88.56
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	88.18
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	88.11
KOG3478	120	consensus Prefoldin subunit 6, KE2 family [Posttra	87.83
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	87.81
PRK10246	1047	exonuclease subunit SbcC; Provisional	87.78
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	87.75
COG4026	290	Uncharacterized protein containing TOPRIM domain,	87.7
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	87.7
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	87.66
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	87.23
PRK10869	553	recombination and repair protein; Provisional	87.11
PF05335	188	DUF745: Protein of unknown function (DUF745); Inte	87.11
PF04065	233	Not3: Not1 N-terminal domain, CCR4-Not complex com	87.0
COG4717	984	Uncharacterized conserved protein [Function unknow	86.87
PF05546	207	She9_MDM33: She9 / Mdm33 family; InterPro: IPR0088	86.81
PF05276	239	SH3BP5: SH3 domain-binding protein 5 (SH3BP5); Int	86.39
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	85.81
PF15450	531	DUF4631: Domain of unknown function (DUF4631)	85.75
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	85.72
PRK10869	553	recombination and repair protein; Provisional	85.71
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	85.55
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	85.42
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	85.11
PF05276	239	SH3BP5: SH3 domain-binding protein 5 (SH3BP5); Int	84.69
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	84.6
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	84.6
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	84.47
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	84.3
PF12949	35	HeH: HeH/LEM domain; PDB: 2OUT_A.	84.11
KOG1937	521	consensus Uncharacterized conserved protein [Funct	83.64
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	83.62
PF15294	278	Leu_zip: Leucine zipper	83.14
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	82.61
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	82.54
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	82.43
PLN02939	977	transferase, transferring glycosyl groups	82.06
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	82.06
PRK11281	1113	hypothetical protein; Provisional	81.38
PF02037	35	SAP: SAP domain; InterPro: IPR003034 The SAP (afte	81.08
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	81.04
COG5283	1213	Phage-related tail protein [Function unknown]	80.48
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	80.46
PRK10884	206	SH3 domain-containing protein; Provisional	80.2

>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=100.00  E-value=3.2e-36  Score=329.52  Aligned_cols=247  Identities=31%  Similarity=0.469  Sum_probs=209.8

Q ss_pred             CCcccChHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcccC-CCCCh--HHHHHHHHHHHHH
Q 002544          155 GATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRS-KPPEE--VALGEAHEAAVQK  231 (910)
Q Consensus       155 ~G~~ltg~~l~~l~~~yv~ain~g~vP~i~sa~~~~~~~e~~~a~~~A~~~Y~~~m~~~-~~~~e--~~L~~~H~~~~~~  231 (910)
                      ||.+||||+|++|+++||+|||+|+||||+|+|.+|++++|.+|+++|+.+|...|+.. .+|++  ++|..+|..|..+
T Consensus         1 gG~~vtG~~L~~L~~~Yv~aIn~G~vP~iesa~~~~~e~e~~~A~~~A~~~Y~~~m~~~~~~P~~~~~eL~~~H~~~~~~   80 (297)
T PF02841_consen    1 GGITVTGPMLAELVKSYVDAINSGSVPCIESAWQAVAEAENRAAVEKAVEHYEEQMEQRVKLPTETLEELLELHEQCEKE   80 (297)
T ss_dssp             TSEB-BHHHHHHHHHHHHHHHHTTS--BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-SSHHHHHHHHHHHHHH
T ss_pred             CCcccccHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999987 56654  8999999999999


Q ss_pred             HHHHhhcccCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhccCCCcchHHHHHHHH
Q 002544          232 ALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQS----MERKLRAACHSSDASIDNVVKVLD  307 (910)
Q Consensus       232 Al~~F~~~~~g~~~~~~~~~~~L~~~l~~~~~~~~~~n~~~s~~~C~~~l~~----l~~~l~~~~~~~~~~~~~~~~~~~  307 (910)
                      |+.+|++++||  +..+.|+..|...|.+.|+.|+..|...|..+|+.+|..    |+.+|..+++.++|+|..|++.++
T Consensus        81 A~~~F~~~s~~--d~~~~~~~~L~~~i~~~~~~~~~~N~~~s~~~C~~~l~~l~~~le~~l~~~~~~~~gg~~~~~~~~~  158 (297)
T PF02841_consen   81 ALEVFMKRSFG--DEDQKYQKKLMEQIEKKFEEFCKQNEEASEKKCQALLQELFQPLEEKLKQGCYSKPGGYQLFLKELD  158 (297)
T ss_dssp             HHHHHHHH------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSTTHHHHHHHHHH
T ss_pred             HHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Confidence            99999999998  477899999999999999999999999999999999998    788888888888889999999999


Q ss_pred             HHHHHhhhcc-CCCChHHHHHHHHhH--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002544          308 GLISEYETSC-HGPGKWQKLATFLQQ--SSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEY  384 (910)
Q Consensus       308 ~~~~~Y~~~~-~gp~k~~~l~~fl~~--~~~~~il~~~~rl~~~~eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~  384 (910)
                      .++.+|...| +||....+|..||+.  .+...|+..++.|... ++++...+.+...++.+...+.......+..+.+.
T Consensus       159 ~~~~~Y~~~p~Kg~ka~evL~~fl~~~~~~~~~ilq~d~~L~~~-ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~  237 (297)
T PF02841_consen  159 ELEKEYEQEPGKGVKAEEVLQEFLQSKESMENSILQADQQLTEK-EKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQ  237 (297)
T ss_dssp             HHHHHHHHSS---TTHHHHHHHHHHHCHHHHHHHHHH-TTS-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999985 788888899999986  6788999999988554 88888888888888888888888877777776666


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 002544          385 LKRYDDAINDKKKLADDYTS  404 (910)
Q Consensus       385 ~k~le~~i~el~~~lee~~~  404 (910)
                      .++++.++..|..+++....
T Consensus       238 ~~~~ee~~~~L~ekme~e~~  257 (297)
T PF02841_consen  238 ERSYEEHIKQLKEKMEEERE  257 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            77777777776655554443

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=99.97  E-value=2.7e-32  Score=292.96  Aligned_cols=153  Identities=46%  Similarity=0.854  Sum_probs=133.7

Q ss_pred             CeeecCCCCCCHHhhhhhhhHHhhhhhHHhhccCCCCCCCcccCCCCceEEEeeccccccccccccCCchHHHHHhhcCC
Q 002544            1 MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPV   80 (910)
Q Consensus         1 ~~IYNs~g~Ide~al~~L~l~tel~~~i~~~~~~~~~~~~~~~~~fP~f~WlvRDf~l~l~~~g~~it~~eyLe~~L~~~   80 (910)
                      +||||++|+|++++|++|++|++++++|+++... ..+...++.|||+|+||||||++++..+|..+||++||+.+|+..
T Consensus       108 ~~IyN~~~~i~~~~l~~L~~~~~l~~~i~~~~~~-~~~~~~~~~~fp~l~wlvRDf~~~~~~~~~~~t~~eyLe~~L~~~  186 (260)
T PF02263_consen  108 VLIYNSMGNIDEDDLDQLELFTELAKHIRVKYGD-SADSEDLGKPFPSLVWLVRDFSLELEDDGGKITPQEYLEQALKPE  186 (260)
T ss_dssp             EEEEEECSSSSHHHHHCCHHHHHHHHHHHHTHHH-HHHHHCTTTTCEEEEEEEECE-SCTCCTTECHHHHHHHHHHCCSS
T ss_pred             ceeeCCCCccchhHHHHHHHHHHHHHHHHHhccc-ccchhhhcccchHHHHHHhhccchhhhccCCCCHHHHHHHHHhcc
Confidence            5899999999999999999999999999986321 112345678999999999999999988888999999999999999


Q ss_pred             CCCChhhhhhhHHHHHHHhhCCCCceeeccCCCCChhhhccccCCCcCCCcHHHHHHHHHHHHHHhccCCCccc
Q 002544           81 QGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV  154 (910)
Q Consensus        81 ~g~~~~~~~~n~~R~~i~~~F~~~~cf~l~~P~~~~~~l~~l~~~~~~~L~~eF~~~~~~l~~~i~~~~~pK~i  154 (910)
                      +|.++.+..+|.+|++|++|||+++||+||+|+.++..++++++++.++|+|+|+++++.||++||+...+|++
T Consensus       187 ~~~~~~~~~~N~iR~~I~~~F~~~~cf~Lp~P~~~~~~l~~l~~l~~~~L~~eF~~~l~~l~~~i~~~~~~k~~  260 (260)
T PF02263_consen  187 SGQDEEIQERNKIRECIRSCFPSRDCFTLPHPGSDVDKLQNLDGLSLDDLDPEFVEQLDELVKYIFSSAKVKTL  260 (260)
T ss_dssp             TSSSCCCCCHHHHHHHHHHHECCEEEEEEE-SSCCCCC-TCGCCCBGGGS-HHHHHHHHHHHHHHHCCT---BE
T ss_pred             cchhHHHHHhhHHHHHHHHHCCCCeEEEecCCCchhhhccCcccCChhhCCHHHHHHHHHHHHHHhccCCcccC
Confidence            99888888999999999999999999999999999998999999999999999999999999999999999874

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>KOG2037 consensus Guanylate-binding protein [General function prediction only]

Probab=99.89  E-value=5.8e-22  Score=226.11  Aligned_cols=327  Identities=17%  Similarity=0.138  Sum_probs=271.2

Q ss_pred             CeeecCCCCCCHHhhhhhhhHHhhhhhHHhhccCCC-----CCCCcccCCCCceEEEeeccccccccccccCCchHHHHH
Q 002544            1 MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGK-----TTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEI   75 (910)
Q Consensus         1 ~~IYNs~g~Ide~al~~L~l~tel~~~i~~~~~~~~-----~~~~~~~~~fP~f~WlvRDf~l~l~~~g~~it~~eyLe~   75 (910)
                      +++|||+|+|+..+|.+++||++++..+++.+.+.+     ++++++..+||.|.|..|||++++..+|.+|++++|++.
T Consensus       115 ~~~~~s~~~~~~~~~~~~~~~~~~~e~~k~~~~l~~~~~a~~~~~~~~~~~p~fa~tt~~~slqi~~~~q~i~ed~l~~l  194 (552)
T KOG2037|consen  115 TWVYGSEGTINGIAMWQLPFVTELTEGIKVASSLMDTQGAFDDQSTFRSCFPDFALTTMDSSLQIYNDSQNIQEDDLQHL  194 (552)
T ss_pred             eeeccCCcccchheecccceeeecCCcceeccccccccccccccccHHHhcchhhceeeeeehhhhcccCcCCHHHHHHH
Confidence            589999999999999999999999999998877532     456678899999999999999999999999999999999


Q ss_pred             hhcCCCCCChhhhhhhHHHHHHHhhCCCCceeeccCCCCChhhhccccCCCcCCCcHHHHHHHHHHHHHHhccCCCccc-
Q 002544           76 ALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-  154 (910)
Q Consensus        76 ~L~~~~g~~~~~~~~n~~R~~i~~~F~~~~cf~l~~P~~~~~~l~~l~~~~~~~L~~eF~~~~~~l~~~i~~~~~pK~i-  154 (910)
                      .|....|.                                 ..|.++...|.++|.+.|+.+...||.+++.....|.+ 
T Consensus       195 ~l~~~~g~---------------------------------~~l~~~~~kp~q~L~~~~~~~s~~~c~~~~~~~~~~~l~  241 (552)
T KOG2037|consen  195 SLFTEYGR---------------------------------LALAHLFKKPFQDLKFLVRDQSFPFCSYIGEHGGTKNLD  241 (552)
T ss_pred             HHHHHHHH---------------------------------HHHHHhccCcHHHHHHHHHHhhhhhhHHHHHhccccccc
Confidence            88764331                                 34666777899999999999999999999999999999 


Q ss_pred             CCcccChHHHHHHHHHHHHHhcCC-CCCCccchHHHHHHHHHHHHHHHHHHHHHhhcccC-CC-CC--hHHHHHHHHHHH
Q 002544          155 GATVLTGPVLIGITESYLDAINNG-AVPTISSSWQSVEEAECRRAYDSATETYMSTFDRS-KP-PE--EVALGEAHEAAV  229 (910)
Q Consensus       155 ~G~~ltg~~l~~l~~~yv~ain~g-~vP~i~sa~~~~~~~e~~~a~~~A~~~Y~~~m~~~-~~-~~--e~~L~~~H~~~~  229 (910)
                      +|..++|+.+..|+..|+.+++.+ .+||..++..+++.++|..+++.+.++|...|.+. .+ |.  ..++...|..+.
T Consensus       242 ~~l~v~~~~~~el~~~r~~~~~~~~d~~c~~~~~~~l~~~~n~~~~~~~~~~~~~~~~ql~~~~p~~~~q~~l~~~~~~~  321 (552)
T KOG2037|consen  242 NRLKVNGPQLEELVQLRVHARSCFEDLPCFLNPHPGLAVAENPAFDGKLEDHYNQFMGQLKVELPNLLLQELLDEKEISG  321 (552)
T ss_pred             cceeecccchHHHHHHHHHHHhhccCcchhhcCchhhhcccCchhhhhHHHHHHHHHHHHhhhhhHHhhhhhccccccCc
Confidence            888999999999999999999999 89999999999999999999999999999999875 32 33  357889999999


Q ss_pred             HHHHHHhhcccCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----h-ccCCCcchHHHHH
Q 002544          230 QKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRA----A-CHSSDASIDNVVK  304 (910)
Q Consensus       230 ~~Al~~F~~~~~g~~~~~~~~~~~L~~~l~~~~~~~~~~n~~~s~~~C~~~l~~l~~~l~~----~-~~~~~~~~~~~~~  304 (910)
                      .++...|....|.  +..+-|++.+...+..-.. +.+.|...+...|+.....+...+..    + .+..++.+..+..
T Consensus       322 ~~~t~~~~~e~fk--~y~~i~q~~~g~~lp~pks-~l~~~aea~~l~~va~ak~~~~~~~Eev~~G~~~~~~s~L~~~~d  398 (552)
T KOG2037|consen  322 REVTCREMKEYFK--AYDKIFQKKLGETLPGPKS-MLKANAEASSLAAVAAAKDIYGPLMEEVKGGDIYLSPSGLNLKHD  398 (552)
T ss_pred             cchhHHHHHHHHH--HHHHHhhHhhhhhCcCccc-HHHHHHHHhhHHHHHHHHHHHhhhhhhhhcCceeecccHHHHHHH
Confidence            9999999988885  6777788888888877666 78888888899999999875554443    4 4555666888888


Q ss_pred             HHHHHHHHhhhcc-CCCChHHHHHHHHhH--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002544          305 VLDGLISEYETSC-HGPGKWQKLATFLQQ--SSEGPILDLVKRLIDQIGSERSSLMLKYRSIE  364 (910)
Q Consensus       305 ~~~~~~~~Y~~~~-~gp~k~~~l~~fl~~--~~~~~il~~~~rl~~~~eke~~~L~~e~~~le  364 (910)
                      .+..+...|...+ +|-+...++..|+++  .+...++..+..++.. ++.....+.......
T Consensus       399 ~~k~~a~~~~~e~rK~ig~~e~~~~~lq~LE~v~~~l~~~~~~~~~s-~~~~~~~r~~A~a~~  460 (552)
T KOG2037|consen  399 KVKELALKYFTEPRKGIGAEEVCQRYLQSLESVEEELLQTDQALTES-KKLFLAARTPAEAAA  460 (552)
T ss_pred             HHHHHHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHhccHHHHHH
Confidence            8888888888765 667777888888886  6677888877777443 444444444444333

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.87  E-value=1e-16  Score=203.74  Aligned_cols=407  Identities=21%  Similarity=0.263  Sum_probs=329.8

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          348 QIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTV  427 (910)
Q Consensus       348 ~~eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~ql  427 (910)
                      .+++++..++.++..+..+++.+.....+.+..    .+.++.++.+++..+++..+.++++..++..+..+...+.+++
T Consensus      1207 ~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~----~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~l 1282 (1930)
T KOG0161|consen 1207 KLEKEKSDLQREIADLAAELEQLSSEKKDLEKK----DKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQL 1282 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHh
Confidence            444555555555555555555555555555554    4677788888888888888888888888888888888888777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          428 DSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEK  507 (910)
Q Consensus       428 e~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~lek  507 (910)
                      +.....+...-           ..+..+..++++++.++++...+...+..++.+++.+++.++.+|+.+. +.+..+.+
T Consensus      1283 ee~e~~~~~~~-----------r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~-e~~~~l~r 1350 (1930)
T KOG0161|consen 1283 EEAEAKLSALS-----------RDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQ-EAKNELER 1350 (1930)
T ss_pred             HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            76666555533           3366688899999999999999999999999999999999999999976 67777877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          508 AAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELS  587 (910)
Q Consensus       508 ~~~~~e~~~~e~q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~  587 (910)
                      ......   .+...+...+.++......++++....+..       ++..++..++.+..++..+++.+..|+.++.++.
T Consensus      1351 ~lsk~~---~e~~~~~~k~e~~~~~~~eelee~kk~l~~-------~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~ 1420 (1930)
T KOG0161|consen 1351 KLSKAN---AELAQWKKKFEEEVLQRLEELEELKKKLQQ-------RLQELEEQIEAANAKNASLEKAKNRLQQELEDLQ 1420 (1930)
T ss_pred             HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            777544   444444555555555555555555444444       4668889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002544          588 EKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLA  667 (910)
Q Consensus       588 ~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~  667 (910)
                      ..++.....+..+++.++.++.-+.+++.........++..+..+.....++..+...++++...++.+..+...++..+
T Consensus      1421 ~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei 1500 (1930)
T KOG0161|consen 1421 LDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEI 1500 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHh
Q 002544          668 MERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALS------------------KVALLEARVEEREKEIESLLES  729 (910)
Q Consensus       668 ~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~------------------~~~elE~rl~e~eee~e~l~~r  729 (910)
                      .++...+.++.+.+..++..+.+++.++.+++..+.++..                  ...++++++.+++++++..  +
T Consensus      1501 ~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~--r 1578 (1930)
T KOG0161|consen 1501 EDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEEL--R 1578 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH--H
Confidence            9999999999999999999999988888777776544322                  1368999999999999999  9


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHhhhh
Q 002544          730 NNEQRASTVKKLEDLLESERRSRAAANAMAER---------------------LSLEVQSAQAKLDEMQQELTKAR  784 (910)
Q Consensus       730 ~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~---------------------l~~ql~~~k~~i~~l~~e~~~~~  784 (910)
                      +++++  .|++|++.|+++++.++++.+-.++                     +.+++..++.++..++...++.+
T Consensus      1579 k~~~~--~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~ 1652 (1930)
T KOG0161|consen 1579 KNLQR--QLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQ 1652 (1930)
T ss_pred             HHHHH--HHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            99999  8999999999999999988766442                     66668888888888888777544

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.86  E-value=2e-15  Score=192.25  Aligned_cols=437  Identities=19%  Similarity=0.265  Sum_probs=320.0

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          347 DQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLK---RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSL  423 (910)
Q Consensus       347 ~~~eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k---~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L  423 (910)
                      ++.......+-.+...+..+...+..++++.+...+...+   .+..+|.+++.++++..+....+...+..++.++..|
T Consensus      1255 ~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l 1334 (1930)
T KOG0161|consen 1255 DEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLL 1334 (1930)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555666777777888888888888887666443   7889999999999999999999999999999999988


Q ss_pred             HHHHH--------------HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 002544          424 SKTVD--------------SLKNEISDWKRKYDQVL----TKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQE  485 (910)
Q Consensus       424 ~~qle--------------~~k~e~~~~kkk~Ee~~----~e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~  485 (910)
                      ..+++              .+..++.+|+++|++..    +++++++++++..++++..+++.+..++..+++.+.++++
T Consensus      1335 ~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~ 1414 (1930)
T KOG0161|consen 1335 REQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQ 1414 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77776              44568899999998665    5689999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          486 EVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAA  565 (910)
Q Consensus       486 Elee~~~k~e~~~~~~k~~lek~~~~~e~~~~e~q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~  565 (910)
                      ++++..           .++++..+.. ..+++.+..++.+.+++......+..+++..+...+...+++..+...++++
T Consensus      1415 el~d~~-----------~d~~~~~~~~-~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~ 1482 (1930)
T KOG0161|consen 1415 ELEDLQ-----------LDLERSRAAV-AALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEEL 1482 (1930)
T ss_pred             HHHHHH-----------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            999555           4444444433 3678888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q 002544          566 ESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQE---------------  630 (910)
Q Consensus       566 ~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~---------------  630 (910)
                      ...++.+.++.+.++.++.++..++.+++..++++++..+.++.++.+++..+.+++..+.-.+.               
T Consensus      1483 ~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e 1562 (1930)
T KOG0161|consen 1483 LEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSE 1562 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998777653221111               


Q ss_pred             ---HHHHHHHHHHH----HHHHHHHHHHHHHHHH--------------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002544          631 ---RCKVAEKEAKK----ATELADRERAEAAAAR--------------KGKSEFENLAMERMAVIERVQRQIESLERQKT  689 (910)
Q Consensus       631 ---~l~~~e~e~~~----~~~~~e~l~~e~~~~~--------------~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~  689 (910)
                         .+.....+...    ....++.++..++.-.              .++.+++..+.........+.+++..+...+.
T Consensus      1563 ~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k 1642 (1930)
T KOG0161|consen 1563 IERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLK 1642 (1930)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHH
Confidence               11111111111    1111111122211111              12222333333444444444555555555556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          690 DLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSA  769 (910)
Q Consensus       690 ~Le~Ele~~~~~~~~~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~  769 (910)
                      .++.+++.......+....+...++++.....+++.+ +..+......-..++..++...+..+........+...-.++
T Consensus      1643 ~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL-~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~Krkl 1721 (1930)
T KOG0161|consen 1643 ELQRELEDAQRAREELLEQLAEAERRLAALQAELEEL-REKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKL 1721 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHH
Confidence            6666677777677777777778888888888888888 666666655666777777766666666555444555555566


Q ss_pred             HHHHHHHHHHHhhhhchhhhhcchhhh
Q 002544          770 QAKLDEMQQELTKARLNETALGSKLRA  796 (910)
Q Consensus       770 k~~i~~l~~e~~~~~~~~~~~~~~~~~  796 (910)
                      ...|-.++.++++...+=.+.+-+.|.
T Consensus      1722 E~~i~~l~~elee~~~~~~~~~Er~kk 1748 (1930)
T KOG0161|consen 1722 EAEIAQLQSELEEEQSELRAAEERAKK 1748 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            666666666666544444445555544

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=99.76  E-value=8.1e-20  Score=225.00  Aligned_cols=419  Identities=21%  Similarity=0.291  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          340 DLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREK  419 (910)
Q Consensus       340 ~~~~rl~~~~eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e  419 (910)
                      +-.++...++++++..+..++..+...++.+.+....+++.    .+.++.++.+++.++++..+.++.+...+..|..+
T Consensus       141 e~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~----~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E  216 (859)
T PF01576_consen  141 EQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKK----RKQLEAQLNELQAKLEESERQRNELTEQKAKLQSE  216 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556667888899999999999999999999999888887    78999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          420 SSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVR  499 (910)
Q Consensus       420 ~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~  499 (910)
                      +++|..+++.....+..+.+           .+..+..+|++++..+++.......+...+..++.+++.++..++... 
T Consensus       217 ~~eL~~qLee~e~~~~~l~r-----------~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~-  284 (859)
T PF01576_consen  217 NSELTRQLEEAESQLSQLQR-----------EKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEE-  284 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhh-
Confidence            99999999988777666433           355677888888888888888888888888888888888888888754 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          500 EAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQ  579 (910)
Q Consensus       500 ~~k~~lek~~~~~e~~~~e~q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L  579 (910)
                      ..+..+.+....+...+..|..+++.   +.......+++    .+.+   +..++.++...++.+..++..+++.+..|
T Consensus       285 e~k~~l~~qlsk~~~El~~~k~K~e~---e~~~~~EelEe----aKKk---L~~~L~el~e~le~~~~~~~~LeK~k~rL  354 (859)
T PF01576_consen  285 EAKSELERQLSKLNAELEQWKKKYEE---EAEQRTEELEE----AKKK---LERKLQELQEQLEEANAKVSSLEKTKKRL  354 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHH---HhhhhHHHHHH----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57777777777655555555444444   22222222222    2222   33467799999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002544          580 KLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKG  659 (910)
Q Consensus       580 ~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e  659 (910)
                      +.++.|+...++.....+..++++.+.|+..+.+|+..+..+....+.+..+......++..+...++.+...++.+..+
T Consensus       355 ~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere  434 (859)
T PF01576_consen  355 QGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERE  434 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998888889999999999999999999999999999999988


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHH
Q 002544          660 KSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK------------------VALLEARVEEREK  721 (910)
Q Consensus       660 ~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~------------------~~elE~rl~e~ee  721 (910)
                      ...++..+.++...+....+.+..|++.+.+|+.++..+...+.++...                  ..++++++.++++
T Consensus       435 ~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKee  514 (859)
T PF01576_consen  435 NKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEE  514 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            8889888888888888888888888888888888887777654432221                  2689999999999


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHH
Q 002544          722 EIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAER---------------------LSLEVQSAQAKLDEMQQEL  780 (910)
Q Consensus       722 e~e~l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~---------------------l~~ql~~~k~~i~~l~~e~  780 (910)
                      +++.+  |+++++  .|++|+..|+.+++.++.+.+..++                     +.+++..++.+|..++..+
T Consensus       515 E~E~~--Rr~~qr--~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~l  590 (859)
T PF01576_consen  515 EFEET--RRNHQR--QLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQREL  590 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHH--HHhhHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhh
Confidence            99999  999999  8999999999999999988776555                     4444677777888887777


Q ss_pred             hh-hhchhh
Q 002544          781 TK-ARLNET  788 (910)
Q Consensus       781 ~~-~~~~~~  788 (910)
                      .+ .|.++.
T Consensus       591 ee~~~~~~~  599 (859)
T PF01576_consen  591 EEAQRAREE  599 (859)
T ss_dssp             ---------
T ss_pred             HHHHHHHHH
Confidence            74 334444

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=99.74  E-value=3.1e-18  Score=180.28  Aligned_cols=128  Identities=32%  Similarity=0.435  Sum_probs=107.6

Q ss_pred             CeeecCCCCCCHHhhhhhhhHHhhhhhHHhhccCCCCCCCcccCCCCceEEEeeccccccccccccCCchHHHHHhhcCC
Q 002544            1 MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPV   80 (910)
Q Consensus         1 ~~IYNs~g~Ide~al~~L~l~tel~~~i~~~~~~~~~~~~~~~~~fP~f~WlvRDf~l~l~~~g~~it~~eyLe~~L~~~   80 (910)
                      ++|||+++.|++.+++.|+++++++..  .   .+......+..+||.|+|+||||++.+...+..+|            
T Consensus        94 ~~i~n~~~~~~~~~~~~l~~~~~~~~~--~---~~~~~~~~~~~~~p~ll~vvRD~~~~~~~~~~~~~------------  156 (224)
T cd01851          94 VLIYNSWETILGDDLAALMGLLKTTLE--V---LGLAGLTEFEKPKPLLLFVVRDFSLDTPLENLDIT------------  156 (224)
T ss_pred             EEEEeccCcccHHHHHHHHHHHHHHHH--h---hhhhhhhhcccCCCceEEEEecCcCCccccccccc------------
Confidence            489999999999999999999998721  1   11112234668999999999999998877554444            


Q ss_pred             CCCChhhhhhhHHHHHHHhhC--CCCceeeccCCCCChhhhccccCCCcCCCcHHHHHHHHHHHHHHhc
Q 002544           81 QGSGRDIAAKNEIRDSIRALF--PDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFE  147 (910)
Q Consensus        81 ~g~~~~~~~~n~~R~~i~~~F--~~~~cf~l~~P~~~~~~l~~l~~~~~~~L~~eF~~~~~~l~~~i~~  147 (910)
                      ++........|.+|.+|+.||  |.++||+||+|+.+...+++  +++...|+|+|+++++.|++++++
T Consensus       157 ~~~~~~~~~~~~ir~~l~~~f~~~~~~cf~l~~p~~~~~~~~~--~~~~~~l~~eF~~~l~~L~~~~~~  223 (224)
T cd01851         157 EGRETLIEDLNKIWSSIRKPFENPPIDCFFLPRPGLLHHLLQN--EGRLKLLPPEFLEALKELRDRFFS  223 (224)
T ss_pred             cccchhHHHHHHHHHHHHhhccCCcchheeccccccchhhccc--ccchhhCCHHHHHHHHHHHHHhcC
Confidence            445567778999999999999  99999999999999988887  889999999999999999999875

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=99.71  E-value=1.1e-18  Score=215.19  Aligned_cols=348  Identities=19%  Similarity=0.291  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          347 DQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLK---RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSL  423 (910)
Q Consensus       347 ~~~eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k---~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L  423 (910)
                      ......+..+......++.++..+..++++.+.....+.+   .++.++.+++..+++..+.+..|...+..++.++..|
T Consensus       197 ee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L  276 (859)
T PF01576_consen  197 EESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQL  276 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHH
Confidence            4445566666777777777777777777777776555443   7899999999999999999999999999999999988


Q ss_pred             HHHHH--------------HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 002544          424 SKTVD--------------SLKNEISDWKRKYDQVL----TKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQE  485 (910)
Q Consensus       424 ~~qle--------------~~k~e~~~~kkk~Ee~~----~e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~  485 (910)
                      ..+++              .+..++..|+++|+...    +.++++++++...+.++...++++...+..+++.+.++++
T Consensus       277 ~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~  356 (859)
T PF01576_consen  277 REQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQG  356 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77766              45668999999998664    4688999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          486 EVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAA  565 (910)
Q Consensus       486 Elee~~~k~e~~~~~~k~~lek~~~~~e~~~~e~q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~  565 (910)
                      +++|+...++..           .... ..+++.+..|+...++|......+..++..+......+..++..+...++++
T Consensus       357 EleDl~~eLe~~-----------~~~~-~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~  424 (859)
T PF01576_consen  357 ELEDLTSELEKA-----------QAAA-AELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEEL  424 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHH-----------HHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHH
Confidence            999777655553           3322 3667788888888888988888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          566 ESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATEL  645 (910)
Q Consensus       566 ~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~  645 (910)
                      ...+..+++.++.|+.+|.++..++..++..++.|++..+.|+.++.+++..       +++++..+...+..+.++.-.
T Consensus       425 ~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~-------leE~E~~l~~~E~~~lRl~~e  497 (859)
T PF01576_consen  425 QEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQ-------LEEAEDALEAEEQKKLRLQVE  497 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999887       666666666666555554333


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          646 ADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIES  725 (910)
Q Consensus       646 ~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE~rl~e~eee~e~  725 (910)
                      +.          ..+.++++.+.+....++..++   ++.+.+..|+.+++.-+.....+......|+..+.+++..++.
T Consensus       498 l~----------~~r~e~er~l~eKeeE~E~~Rr---~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~  564 (859)
T PF01576_consen  498 LQ----------QLRQEIERELQEKEEEFEETRR---NHQRQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDH  564 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HH----------HHHHHHHHHHHhhhhHHHHHHH---hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32          2344455666666666666554   6677777777777766666666555566777777777666665


Q ss_pred             H
Q 002544          726 L  726 (910)
Q Consensus       726 l  726 (910)
                      .
T Consensus       565 ~  565 (859)
T PF01576_consen  565 A  565 (859)
T ss_dssp             -
T ss_pred             H
Confidence            5

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG2037 consensus Guanylate-binding protein [General function prediction only]

Probab=99.62  E-value=2.4e-14  Score=164.18  Aligned_cols=257  Identities=18%  Similarity=0.186  Sum_probs=218.3

Q ss_pred             eeecCCCCCCHHhhhhhhhHHhhhhhHHhhccCCCCCCCcccCCCCceEEEeecccccccc-ccccCCchHHHHHhhcCC
Q 002544            2 FIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVE-DNRKITPRDYLEIALRPV   80 (910)
Q Consensus         2 ~IYNs~g~Ide~al~~L~l~tel~~~i~~~~~~~~~~~~~~~~~fP~f~WlvRDf~l~l~~-~g~~it~~eyLe~~L~~~   80 (910)
                      -|||....|+++++++|++++.+++...-.         .+..+|.++.+++|||+.+.+. .|. -+.+..|.+.++..
T Consensus       178 qi~~~~q~i~ed~l~~l~l~~~~g~~~l~~---------~~~kp~q~L~~~~~~~s~~~c~~~~~-~~~~~~l~~~l~v~  247 (552)
T KOG2037|consen  178 QIYNDSQNIQEDDLQHLSLFTEYGRLALAH---------LFKKPFQDLKFLVRDQSFPFCSYIGE-HGGTKNLDNRLKVN  247 (552)
T ss_pred             hhhcccCcCCHHHHHHHHHHHHHHHHHHHH---------hccCcHHHHHHHHHHhhhhhhHHHHH-hccccccccceeec
Confidence            589999999999999999999999854322         2457899999999999999875 354 35567777777653


Q ss_pred             CCCChhhhhhhHHHHHHHhhCCCCceeeccCCCCChhhhccccCCCcCCCcHHHHHHHHHHHHHHhc--cCCCcccCCcc
Q 002544           81 QGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFE--RTRPKQVGATV  158 (910)
Q Consensus        81 ~g~~~~~~~~n~~R~~i~~~F~~~~cf~l~~P~~~~~~l~~l~~~~~~~L~~eF~~~~~~l~~~i~~--~~~pK~i~G~~  158 (910)
                         ++...++-.+|+++++||-+.-||.+|+|+......+..++ ...++.+.|..++...++....  ...+|.++|..
T Consensus       248 ---~~~~~el~~~r~~~~~~~~d~~c~~~~~~~l~~~~n~~~~~-~~~~~~~~~~~ql~~~~p~~~~q~~l~~~~~~~~~  323 (552)
T KOG2037|consen  248 ---GPQLEELVQLRVHARSCFEDLPCFLNPHPGLAVAENPAFDG-KLEDHYNQFMGQLKVELPNLLLQELLDEKEISGRE  323 (552)
T ss_pred             ---ccchHHHHHHHHHHHhhccCcchhhcCchhhhcccCchhhh-hHHHHHHHHHHHHhhhhhHHhhhhhccccccCccc
Confidence               45667788899999999999999999999998877766654 7889999999999866666554  47899999999


Q ss_pred             cChHHHHHHHHHHHHHhc---CCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcccCC----CCChHHHHHHHHHHHHH
Q 002544          159 LTGPVLIGITESYLDAIN---NGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRSK----PPEEVALGEAHEAAVQK  231 (910)
Q Consensus       159 ltg~~l~~l~~~yv~ain---~g~vP~i~sa~~~~~~~e~~~a~~~A~~~Y~~~m~~~~----~~~e~~L~~~H~~~~~~  231 (910)
                      +|+..+..+++.|...+.   .-.+|-+.+...+++++.+..++..|...|...|+.++    .+.+..|...|......
T Consensus       324 ~t~~~~~e~fk~y~~i~q~~~g~~lp~pks~l~~~aea~~l~~va~ak~~~~~~~Eev~~G~~~~~~s~L~~~~d~~k~~  403 (552)
T KOG2037|consen  324 VTCREMKEYFKAYDKIFQKKLGETLPGPKSMLKANAEASSLAAVAAAKDIYGPLMEEVKGGDIYLSPSGLNLKHDKVKEL  403 (552)
T ss_pred             hhHHHHHHHHHHHHHHhhHhhhhhCcCcccHHHHHHHHhhHHHHHHHHHHHhhhhhhhhcCceeecccHHHHHHHHHHHH
Confidence            999999999999999999   55799999999999999999999999999999998753    35678999999999999


Q ss_pred             HHHHhhc-cc-CCChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          232 ALAVYNA-GA-VGVGLARKKYEGLLQKFFRKAFEDHKKNVYME  272 (910)
Q Consensus       232 Al~~F~~-~~-~g~~~~~~~~~~~L~~~l~~~~~~~~~~n~~~  272 (910)
                      |+..|.. +. +|..+..+.|...|...+...+..++..+...
T Consensus       404 a~~~~~e~rK~ig~~e~~~~~lq~LE~v~~~l~~~~~~~~~s~  446 (552)
T KOG2037|consen  404 ALKYFTEPRKGIGAEEVCQRYLQSLESVEEELLQTDQALTESK  446 (552)
T ss_pred             HHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999988 34 88888999999999998888888777766443

>PRK02224 chromosome segregation protein; Provisional

Probab=99.54  E-value=1.1e-08  Score=129.48  Aligned_cols=78  Identities=23%  Similarity=0.345  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhch
Q 002544          707 SKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLN  786 (910)
Q Consensus       707 ~~~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~~e~~~~~~~  786 (910)
                      .++.++..++.+...++..+  .....+...|..+...+......+.....+.+.+..++..++..|+.++..+...+..
T Consensus       572 ~~~~~~~~~~~~l~~~~~~l--e~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~~~~~~~~~e  649 (880)
T PRK02224        572 EEVAELNSKLAELKERIESL--ERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIE  649 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence            34445555555555555555  2344444555555555555555555555555666667777777777776666555444

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.43  E-value=2.2e-06  Score=111.04  Aligned_cols=236  Identities=22%  Similarity=0.279  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          546 TKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERF  625 (910)
Q Consensus       546 ~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~  625 (910)
                      .++...+..+..+...+..+...+..+...+..+...+.++...+...+..+..++..+..+......+...+.....++
T Consensus       758 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~  837 (1163)
T COG1196         758 ERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEI  837 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333334444333344444444444344444444444455555544555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002544          626 EEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEA  705 (910)
Q Consensus       626 eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~  705 (910)
                      .+++..+..+...+.........+...+..++.++..+...+.........+..++..+...+..+..+++........+
T Consensus       838 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l  917 (1163)
T COG1196         838 EELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEEL  917 (1163)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555556665666655655555555555444


Q ss_pred             HHHHHHHHHHHHHHHHHHHH--------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          706 LSKVALLEARVEEREKEIES--------LLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQ  777 (910)
Q Consensus       706 ~~~~~elE~rl~e~eee~e~--------l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~  777 (910)
                      ..+...++..+......+..        -+++........|..|+.++..+.+++.++..||+++..++..+....+.++
T Consensus       918 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~  997 (1163)
T COG1196         918 EAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLL  997 (1163)
T ss_pred             HHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444333        1145666667788999999999999999999999999999666666665555


Q ss_pred             HHHh
Q 002544          778 QELT  781 (910)
Q Consensus       778 ~e~~  781 (910)
                      ....
T Consensus       998 ~~i~ 1001 (1163)
T COG1196         998 EVIE 1001 (1163)
T ss_pred             HHHH
Confidence            5544

>PRK03918 chromosome segregation protein; Provisional

Probab=99.42  E-value=1.3e-06  Score=110.94  Aligned_cols=6  Identities=0%  Similarity=0.218  Sum_probs=2.1

Q ss_pred             HHHHHH
Q 002544          365 DNMKLL  370 (910)
Q Consensus       365 ~e~e~l  370 (910)
                      .++..+
T Consensus       207 ~ei~~l  212 (880)
T PRK03918        207 REINEI  212 (880)
T ss_pred             HHHHHH
Confidence            333333

>PRK03918 chromosome segregation protein; Provisional

Probab=99.42  E-value=1.9e-06  Score=109.43  Aligned_cols=31  Identities=13%  Similarity=0.292  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002544          349 IGSERSSLMLKYRSIEDNMKLLKKQLEDSER  379 (910)
Q Consensus       349 ~eke~~~L~~e~~~le~e~e~l~k~lee~e~  379 (910)
                      +.++++.+..++..++..+..+...+..++.
T Consensus       205 l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~  235 (880)
T PRK03918        205 VLREINEISSELPELREELEKLEKEVKELEE  235 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444555554444444444444433

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.42  E-value=8.5e-07  Score=116.14  Aligned_cols=9  Identities=11%  Similarity=0.109  Sum_probs=4.4

Q ss_pred             CCCCceEEE
Q 002544           44 QFSPIFVWL   52 (910)
Q Consensus        44 ~~fP~f~Wl   52 (910)
                      .|+|.|.++
T Consensus        20 ~f~~~~~~i   28 (1179)
T TIGR02168        20 NFDKGITGI   28 (1179)
T ss_pred             EecCCcEEE
Confidence            345555544

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.40  E-value=1.1e-06  Score=115.05  Aligned_cols=6  Identities=0%  Similarity=-0.141  Sum_probs=2.6

Q ss_pred             CCcccC
Q 002544          155 GATVLT  160 (910)
Q Consensus       155 ~G~~lt  160 (910)
                      +|.+++
T Consensus       115 ~~~~~~  120 (1179)
T TIGR02168       115 NGQPCR  120 (1179)
T ss_pred             CCCccc
Confidence            444443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR00606 rad50 rad50

Probab=99.39  E-value=6.3e-06  Score=108.18  Aligned_cols=46  Identities=7%  Similarity=0.089  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002544          734 RASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELT  781 (910)
Q Consensus       734 r~~~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~~e~~  781 (910)
                      +..+|..|+..|+.  ..+..+..+|.....++..++--++++..+..
T Consensus      1080 le~qi~~l~~eL~e--~~yk~a~~ryrka~i~~~~~~~~~~d~~~~~~ 1125 (1311)
T TIGR00606      1080 YEKEIKHFKKELRE--PQFRDAEEKYREMMIVMRTTELVNKDLDIYYK 1125 (1311)
T ss_pred             HHHHHHHHHHHHcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666666644  56677888888877777776666666655544

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=99.33  E-value=3.7e-06  Score=101.71  Aligned_cols=155  Identities=19%  Similarity=0.252  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          341 LVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEY---LKRYDDAINDKKKLADDYTSRINNLQGENISLR  417 (910)
Q Consensus       341 ~~~rl~~~~eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~---~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le  417 (910)
                      ....++...+..+..+..-++.++.++..|......+.......   ...+..+...++.+++.....+..-..++-.+.
T Consensus       228 alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~q  307 (775)
T PF10174_consen  228 ALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQ  307 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666667777777777777777777766554333321111   223333344444556666555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 002544          418 EKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEA-------RLAAAREQALSAQEEVEEW  490 (910)
Q Consensus       418 ~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~-------~~~~le~~~~~~q~Elee~  490 (910)
                      +++..+..+....+..+.-.+-.    +...+.-...|+++++.|..++++...       .+..+...+..++.++.++
T Consensus       308 t~l~~~~~~~~d~r~hi~~lkes----l~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l  383 (775)
T PF10174_consen  308 TRLETLEEQDSDMRQHIEVLKES----LRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDL  383 (775)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555444444433322    222333355566666666666666655       4555667777777888888


Q ss_pred             HHHHHHHHH
Q 002544          491 KRKYGVAVR  499 (910)
Q Consensus       491 ~~k~e~~~~  499 (910)
                      +..|+....
T Consensus       384 ~d~~d~~e~  392 (775)
T PF10174_consen  384 RDMLDKKER  392 (775)
T ss_pred             HHHHHHHHH
Confidence            888888643

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=99.29  E-value=1.1e-05  Score=97.72  Aligned_cols=62  Identities=16%  Similarity=0.289  Sum_probs=29.9

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002544          721 KEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKA  783 (910)
Q Consensus       721 ee~e~l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~~e~~~~  783 (910)
                      ++++.+ +..+..++.++..|+..|..-.-.+..+......+.....+..+.|+.++-.+++.
T Consensus       465 Eele~~-~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~  526 (775)
T PF10174_consen  465 EELETY-QKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKK  526 (775)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHh
Confidence            344444 44444555555555555554444444444444444444444444444444444433

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>TIGR00606 rad50 rad50

Probab=99.27  E-value=5.3e-05  Score=99.62  Aligned_cols=65  Identities=12%  Similarity=0.087  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          713 EARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQEL  780 (910)
Q Consensus       713 E~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~~e~  780 (910)
                      ...+.++..++..+ ...+...  ....+..........++.+......+..++..++.+|..++.++
T Consensus      1027 ~~~l~el~~eI~~l-~~~~~~~--~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606      1027 ENELKEVEEELKQH-LKEMGQM--QVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred             HHHHHHHHHHHHHH-HHHHhhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55556666666666 4444443  44556666666666666666666666666666666666666666

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.27  E-value=5.3e-05  Score=99.33  Aligned_cols=16  Identities=0%  Similarity=-0.064  Sum_probs=10.3

Q ss_pred             cCCcccChHHHHHHHH
Q 002544          154 VGATVLTGPVLIGITE  169 (910)
Q Consensus       154 i~G~~ltg~~l~~l~~  169 (910)
                      ++|.+++...+..++.
T Consensus       112 ~n~~~~~~~~~~~~l~  127 (1164)
T TIGR02169       112 LNGQRVRLSEIHDFLA  127 (1164)
T ss_pred             ECCccccHHHHHHHHH
Confidence            4777777666655554

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=99.27  E-value=5e-05  Score=98.80  Aligned_cols=63  Identities=14%  Similarity=0.212  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          555 LTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK  617 (910)
Q Consensus       555 i~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~  617 (910)
                      +..+...++.+.............++.+...+....+.+...+..+...+..+..++.++...
T Consensus       471 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~  533 (1201)
T PF12128_consen  471 LEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQ  533 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333444444444444444444444555555555555555555555555555555555555444

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.23  E-value=7.6e-05  Score=97.03  Aligned_cols=182  Identities=23%  Similarity=0.322  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 002544          599 SFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQ  678 (910)
Q Consensus       599 ~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~  678 (910)
                      .+...+..++.++..+...+.....++..++..+..+......+....+.+..........+..++..+.....++..+.
T Consensus       734 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  813 (1163)
T COG1196         734 QLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALE  813 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333444444444443333333333333333333333444444444444444455555


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          679 RQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAM  758 (910)
Q Consensus       679 ~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r  758 (910)
                      .++........++..++..+......+...+..+...+...+..++.+ ..........+..+...+...+..+..+...
T Consensus       814 ~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~  892 (1163)
T COG1196         814 RELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEEL-KEELEELEAEKEELEDELKELEEEKEELEEE  892 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555544444444555555444444444 3333334444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Q 002544          759 AERLSLEVQSAQAKLDEMQQELT  781 (910)
Q Consensus       759 ~e~l~~ql~~~k~~i~~l~~e~~  781 (910)
                      +..+...+..++..+..+.....
T Consensus       893 l~~~~~~~~~~~~~~~~~~~~~~  915 (1163)
T COG1196         893 LRELESELAELKEEIEKLRERLE  915 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444433333

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.20  E-value=1.5e-06  Score=113.84  Aligned_cols=57  Identities=18%  Similarity=0.252  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          558 LRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYL  614 (910)
Q Consensus       558 l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el  614 (910)
                      +...+..+..++..++..+..++.++..+...+......+..+...+..+..++..+
T Consensus       292 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~  348 (1164)
T TIGR02169       292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEE  348 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333333333333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=99.15  E-value=8.1e-05  Score=90.44  Aligned_cols=42  Identities=17%  Similarity=0.137  Sum_probs=28.4

Q ss_pred             HHHHhcC--CCCCCccchHHHHHHHHHHHH-HHHHHHHHHhhccc
Q 002544          171 YLDAINN--GAVPTISSSWQSVEEAECRRA-YDSATETYMSTFDR  212 (910)
Q Consensus       171 yv~ain~--g~vP~i~sa~~~~~~~e~~~a-~~~A~~~Y~~~m~~  212 (910)
                      |++-|=+  +-+|.|+-.-..+....+..+ ...++.+|...+..
T Consensus       255 YLEDIIGT~ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~  299 (1293)
T KOG0996|consen  255 YLEDIIGTNRYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKA  299 (1293)
T ss_pred             HHHHHhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            4555543  458999877777776665544 66788888877654

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=99.15  E-value=6.5e-05  Score=88.99  Aligned_cols=98  Identities=17%  Similarity=0.200  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 002544          672 AVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRS  751 (910)
Q Consensus       672 ~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~~~  751 (910)
                      .........+.+|+.++..+..+++.+.............+-..++....+.+.. +......+..+..+..+++..+..
T Consensus       330 e~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~A-k~ea~~~~~E~~~~k~E~e~~ka~  408 (522)
T PF05701_consen  330 EREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEA-KKEAEEAKEEVEKAKEEAEQTKAA  408 (522)
T ss_pred             HHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444455555555555555554444333333444555555555555555 444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 002544          752 RAAANAMAERLSLEVQSAQ  770 (910)
Q Consensus       752 ~~ea~~r~e~l~~ql~~~k  770 (910)
                      ...+..|+.....++..++
T Consensus       409 i~t~E~rL~aa~ke~eaaK  427 (522)
T PF05701_consen  409 IKTAEERLEAALKEAEAAK  427 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4444444444444433333

Several sequences in this family are described as being myosin heavy chain-like.

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=99.12  E-value=0.00022  Score=92.91  Aligned_cols=87  Identities=18%  Similarity=0.297  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          344 RLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSL  423 (910)
Q Consensus       344 rl~~~~eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L  423 (910)
                      ++..........+..++..+.+++..+...+..++.....|...=-.++......+.+....+..+...+..|.....++
T Consensus       299 ~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di  378 (1201)
T PF12128_consen  299 KLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDI  378 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444455556666666666666666666666653333321111111111333334444444444444444444444


Q ss_pred             HHHHHHH
Q 002544          424 SKTVDSL  430 (910)
Q Consensus       424 ~~qle~~  430 (910)
                      ....+..
T Consensus       379 ~~ky~~~  385 (1201)
T PF12128_consen  379 ESKYNKL  385 (1201)
T ss_pred             HHHHHHH
Confidence            4444433

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=99.12  E-value=0.0002  Score=92.04  Aligned_cols=76  Identities=13%  Similarity=0.210  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Q 002544          705 ALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLE--------VQSAQAKLDEM  776 (910)
Q Consensus       705 ~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~l~~q--------l~~~k~~i~~l  776 (910)
                      ...++++|..++..+..++..+ +..+.+...+|....+.+...+.+-..-..|+..+...        +.++++.|..+
T Consensus      1241 ~~~k~qEl~~~i~kl~~el~pl-q~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~L 1319 (1822)
T KOG4674|consen 1241 NLEKIQELRDKIEKLNFELAPL-QNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRL 1319 (1822)
T ss_pred             HHHHHHHHHHHHHHHHhhHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence            3334567777777777777777 77777777777777777766666666666666665444        66777777777


Q ss_pred             HHHHh
Q 002544          777 QQELT  781 (910)
Q Consensus       777 ~~e~~  781 (910)
                      .+++.
T Consensus      1320 k~el~ 1324 (1822)
T KOG4674|consen 1320 KEELE 1324 (1822)
T ss_pred             HHHHH
Confidence            66666

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=99.08  E-value=2.4e-05  Score=90.11  Aligned_cols=50  Identities=14%  Similarity=0.158  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          552 EQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFE  601 (910)
Q Consensus       552 e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lE  601 (910)
                      ..++..+..++..++..+...+.....|..++.++....+..-..++...
T Consensus       282 ~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aR  331 (546)
T PF07888_consen  282 QQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQAR  331 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34444555555555555555555555566666555555554444444443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=99.08  E-value=0.00026  Score=90.89  Aligned_cols=190  Identities=17%  Similarity=0.208  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 002544          589 KLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAM  668 (910)
Q Consensus       589 ~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~  668 (910)
                      .+..+......+..++..+.-++.+++..|.+...++....-.+.....++.++......+..+++.....+..+++.+.
T Consensus       385 sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~  464 (1822)
T KOG4674|consen  385 SLTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELE  464 (1822)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHhhHH
Q 002544          669 ERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKV----------------ALLEARVEEREKEIESLLESNNE  732 (910)
Q Consensus       669 e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~----------------~elE~rl~e~eee~e~l~~r~~~  732 (910)
                      .+..++..+.+++..+...+.+|..++.-+..++.+.....                .-+..++-++..- ..+ ..++.
T Consensus       465 ~l~~~~~~~~renk~l~~~~sdlsrqv~~Ll~el~e~~~~~~~~~~s~~~~~es~S~~iIse~Lv~F~nI-~eL-qekN~  542 (1822)
T KOG4674|consen  465 SLKKQLNDLERENKLLEQQISDLSRQVNVLLLELDELRKGSKITVSSDSTENESDSEEIISERLVEFSNI-NEL-QEKNV  542 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccCccHHHHHHHHHHHhccH-HHH-HHHHH
Confidence            66666666666666666666666665544444443333221                2344444444322 223 34455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002544          733 QRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTK  782 (910)
Q Consensus       733 qr~~~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~~e~~~  782 (910)
                      .+...|+.|...++.....  .-..-...++.-+..+...|..+...+++
T Consensus       543 eLL~~vR~Lae~lE~~E~~--~~~~~~~~~k~~~~~a~e~i~~L~~~l~e  590 (1822)
T KOG4674|consen  543 ELLNAVRELAEKLEAAEKT--QDKTLQNILKETINEASEKIAELEKELEE  590 (1822)
T ss_pred             HHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5545566666655433222  11112222333355566666665555553

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=99.04  E-value=0.00022  Score=86.77  Aligned_cols=60  Identities=15%  Similarity=0.269  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhhcchhhh
Q 002544          737 TVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRA  796 (910)
Q Consensus       737 ~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~~e~~~~~~~~~~~~~~~~~  796 (910)
                      .+..+..........+.++..-+..+..++..+++.++.+.....++-.+..-+++|+-+
T Consensus       964 ~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~~K~e~ 1023 (1293)
T KOG0996|consen  964 ELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERIDIENKLEA 1023 (1293)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence            334444444444444555555555556666666666666655555544444434555444

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=99.03  E-value=0.00014  Score=87.48  Aligned_cols=237  Identities=15%  Similarity=0.170  Sum_probs=140.4

Q ss_pred             HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          552 EQCLTTLRLELKAAESK-----MRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFE  626 (910)
Q Consensus       552 e~ei~~l~~~lee~~~k-----i~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~e  626 (910)
                      ..++..++..+......     +...+..+..+..+|..|-..++.........++....+...+.++++....+...++
T Consensus       255 ~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~  334 (569)
T PRK04778        255 EKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEID  334 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555553333     4555667777888888888888888888888888888888888888887777776666


Q ss_pred             HHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002544          627 EVQER----------CKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVN  696 (910)
Q Consensus       627 E~e~~----------l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele  696 (910)
                      .+...          ...+++++..+...+..+...+......       ++.+...++.+..++..++.....+...+.
T Consensus       335 ~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~-------ysel~e~leel~e~leeie~eq~ei~e~l~  407 (569)
T PRK04778        335 RVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIA-------YSELQEELEEILKQLEEIEKEQEKLSEMLQ  407 (569)
T ss_pred             HHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66665          3444444444444444333333333322       444445555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 002544          697 RIRESELEALSKVALLEARVEERE----------------KEIESLLESNNEQRASTVKKLEDLLESERR-SRAAANAMA  759 (910)
Q Consensus       697 ~~~~~~~~~~~~~~elE~rl~e~e----------------ee~e~l~~r~~~qr~~~i~~Le~~le~e~~-~~~ea~~r~  759 (910)
                      .++....++..++..+...+.+..                ..+... ..........+.. +..+-.+.. .+.++..++
T Consensus       408 ~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~-~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~  485 (569)
T PRK04778        408 GLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEV-SDEIEALAEELEE-KPINMEAVNRLLEEATEDV  485 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH-HHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHH
Confidence            555555544444444433333332                233333 3444445556666 556655555 889999999


Q ss_pred             HHHHHH---HHHHHHHHHHHHHHHhhhhchhhhhcchhhhh
Q 002544          760 ERLSLE---VQSAQAKLDEMQQELTKARLNETALGSKLRAV  797 (910)
Q Consensus       760 e~l~~q---l~~~k~~i~~l~~e~~~~~~~~~~~~~~~~~~  797 (910)
                      +.+..+   +..+...+..+.++-..+|..-...+..++-+
T Consensus       486 ~~L~~q~~dL~~~a~~lE~~Iqy~nRfr~~~~~V~~~f~~A  526 (569)
T PRK04778        486 ETLEEETEELVENATLTEQLIQYANRYRSDNEEVAEALNEA  526 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence            998888   55566666666677555555444455555543

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=99.02  E-value=0.00013  Score=87.25  Aligned_cols=67  Identities=12%  Similarity=0.085  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          561 ELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEE  627 (910)
Q Consensus       561 ~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE  627 (910)
                      .+++..++.-.++++.+.|..+++.|...+........+++..-+.|..+.+.+..........+.+
T Consensus       395 s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~r  461 (1195)
T KOG4643|consen  395 SYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSR  461 (1195)
T ss_pred             hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            6677777777777777777777777777777777777777777777777777776654444443333

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=99.02  E-value=5.8e-05  Score=87.05  Aligned_cols=97  Identities=16%  Similarity=0.238  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          540 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYK  619 (910)
Q Consensus       540 ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~  619 (910)
                      ++..++..+...+++..-+..+|..+.+.-+..-.+....+.+..++..++.++...+   ......+.+++..++....
T Consensus       291 qLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~l---ke~~~q~~qEk~~l~~~~e  367 (546)
T PF07888_consen  291 QLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLEL---KEGRSQWAQEKQALQHSAE  367 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            3334444444444555556666655555555555555656666666665555444332   3333444555555544333


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 002544          620 SEFERFEEVQERCKVAEKEA  639 (910)
Q Consensus       620 e~~~~~eE~e~~l~~~e~e~  639 (910)
                      ....++..+..++..+++.+
T Consensus       368 ~~k~~ie~L~~el~~~e~~l  387 (546)
T PF07888_consen  368 ADKDEIEKLSRELQMLEEHL  387 (546)
T ss_pred             HhHHHHHHHHHHHHHHHHHH
Confidence            33334455555554444433

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=99.01  E-value=0.00019  Score=83.36  Aligned_cols=115  Identities=16%  Similarity=0.170  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 002544          552 EQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFE---RFEEV  628 (910)
Q Consensus       552 e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~---~~eE~  628 (910)
                      ..++.+++-.|.++.-+.+++...+..|+.+-..+......+.......+..+..|.....+.++++++...   +++..
T Consensus       329 trqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~  408 (1265)
T KOG0976|consen  329 TRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQG  408 (1265)
T ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence            344555555555555555555555555555555555555555544445555555555555555555444443   23444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 002544          629 QERCKVAEKEAKKATELADRERAEAAAARKGKSEFENL  666 (910)
Q Consensus       629 e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~  666 (910)
                      ...-+.+..++.++.++.+.+...+..+......++..
T Consensus       409 ~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~L  446 (1265)
T KOG0976|consen  409 KKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVL  446 (1265)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHH
Confidence            44555566666666666666666655555444444443

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=98.96  E-value=0.00028  Score=82.10  Aligned_cols=80  Identities=15%  Similarity=0.172  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          575 EISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAA  654 (910)
Q Consensus       575 e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~  654 (910)
                      +...+..++.++.-.+-+++..+..+...+..|++..+.+.....       .++...++.+.+++.+.+..++....++
T Consensus       324 enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr-------~i~e~k~nve~elqsL~~l~aerqeQid  396 (1265)
T KOG0976|consen  324 ENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVR-------SIQEKKENVEEELQSLLELQAERQEQID  396 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555555555555555555555555555444322       2333333333444444444444444444


Q ss_pred             HHHHhhH
Q 002544          655 AARKGKS  661 (910)
Q Consensus       655 ~~~~e~~  661 (910)
                      .+..-+.
T Consensus       397 elKn~if  403 (1265)
T KOG0976|consen  397 ELKNHIF  403 (1265)
T ss_pred             HHHHhhh
Confidence            4433333

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.95  E-value=0.00038  Score=82.58  Aligned_cols=36  Identities=28%  Similarity=0.354  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          411 GENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLT  446 (910)
Q Consensus       411 ~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~  446 (910)
                      .++.....++......|..++.++...+..|...+.
T Consensus       116 ~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~  151 (522)
T PF05701_consen  116 AELESAREQYASAVAELDSVKQELEKLRQELASALD  151 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555566666666666666666655443

Several sequences in this family are described as being myosin heavy chain-like.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.86  E-value=7.9e-05  Score=82.93  Aligned_cols=101  Identities=22%  Similarity=0.300  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002544          385 LKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKS  464 (910)
Q Consensus       385 ~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~  464 (910)
                      ...|+.++.++...++.....+..+..++..+..+..++.              .+|+....    ....+..++..++.
T Consensus        49 ~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r--------------~k~e~e~~----~~~~le~el~~lrk  110 (312)
T PF00038_consen   49 KEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLR--------------RKYEEELA----ERKDLEEELESLRK  110 (312)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH----HHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHH--------------HHHHHHHH----HHHHHHHHHhhhhh
Confidence            4457777777766666666666655555555555444444              44433222    25567788888888


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          465 RSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKA  503 (910)
Q Consensus       465 ~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~  503 (910)
                      .+++.......++..+..++.+++-++.-|+..+...+.
T Consensus       111 ~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~  149 (312)
T PF00038_consen  111 DLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELRE  149 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred             hhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence            899888888999999999999999888888887654443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.86  E-value=4.2e-06  Score=89.04  Aligned_cols=223  Identities=22%  Similarity=0.278  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          537 KEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQ  616 (910)
Q Consensus       537 le~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~  616 (910)
                      +..++..+..++..+...+......+..++..+.++.+.+..+...+......+..+...+..+++.....+..+..++.
T Consensus         6 l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~   85 (237)
T PF00261_consen    6 LKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLEN   85 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444444444444444444444444455555555555555555544444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002544          617 KYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVN  696 (910)
Q Consensus       617 ~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele  696 (910)
                      .......+++.++.++..+......+...+++....+..       +...+......++.+...+..|+.++..+...+.
T Consensus        86 r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~-------~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk  158 (237)
T PF00261_consen   86 REQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKV-------LEQELERAEERAEAAESKIKELEEELKSVGNNLK  158 (237)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Confidence            444444444444444444444443333333322222222       2222233333333333333344444444444443


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          697 RIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQ  767 (910)
Q Consensus       697 ~~~~~~~~~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~  767 (910)
                      .+......+..+...++.++..+...+... ..+.......+..|+..++.....+......+..++.+++
T Consensus       159 ~lE~~~~~~~~re~~~e~~i~~L~~~lkea-E~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld  228 (237)
T PF00261_consen  159 SLEASEEKASEREDEYEEKIRDLEEKLKEA-ENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELD  228 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333343444444444444444444 3444444444555555555554454444444554444333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.84  E-value=6.6e-06  Score=87.54  Aligned_cols=90  Identities=20%  Similarity=0.236  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          606 IMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLE  685 (910)
Q Consensus       606 ~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le  685 (910)
                      .++.++..+.....+...+++++..++..++..+.++..+++.+...+..+..++......+..+....+.+......++
T Consensus        96 ~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e  175 (237)
T PF00261_consen   96 ELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYE  175 (237)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence            33333333333333334444444444444444444444444444444444444444433333333333333333333333


Q ss_pred             HHHhHHHHHH
Q 002544          686 RQKTDLTNEV  695 (910)
Q Consensus       686 ~e~~~Le~El  695 (910)
                      ..+..|...+
T Consensus       176 ~~i~~L~~~l  185 (237)
T PF00261_consen  176 EKIRDLEEKL  185 (237)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.80  E-value=0.0015  Score=79.98  Aligned_cols=33  Identities=30%  Similarity=0.293  Sum_probs=21.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002544          336 GPILDLVKRLIDQIGSERSSLMLKYRSIEDNMK  368 (910)
Q Consensus       336 ~~il~~~~rl~~~~eke~~~L~~e~~~le~e~e  368 (910)
                      ...++.++.++...+.++..++.+|..++..+.
T Consensus       220 ~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~  252 (1074)
T KOG0250|consen  220 MESLDHAKELIDLKEEEIKNLKKKIKEEEEKLD  252 (1074)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            344566666666667777777777766665444

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.78  E-value=0.00083  Score=79.45  Aligned_cols=140  Identities=19%  Similarity=0.275  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          546 TKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKEL---SEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEF  622 (910)
Q Consensus       546 ~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL---~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~  622 (910)
                      .+++....++.++.+.-+.+..+++.++..+..|+.+++..   +.-.+.+...--++|.+++.|+.++.+|+.      
T Consensus       403 kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEa------  476 (1243)
T KOG0971|consen  403 KELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEA------  476 (1243)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHH------
Confidence            33333333444444444444444444444444444444321   112222333444677777777777777765      


Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002544          623 ERFEEVQERCKVAEKE-AKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTN  693 (910)
Q Consensus       623 ~~~eE~e~~l~~~e~e-~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~  693 (910)
                        ++++.+++.+...+ ...++++++.+...+..++..+...+.-+..+..-|-..+..+..|..++..+.+
T Consensus       477 --lee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~d  546 (1243)
T KOG0971|consen  477 --LEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTD  546 (1243)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              55566666555444 3344555555555544555555555554555555555555555555555555444

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.72  E-value=0.0022  Score=77.12  Aligned_cols=17  Identities=12%  Similarity=0.112  Sum_probs=7.1

Q ss_pred             HHHHHHHHHhhhHHHHH
Q 002544          455 VCSEIEVLKSRSTAAEA  471 (910)
Q Consensus       455 l~~eleel~~~~ee~e~  471 (910)
                      +=.++++|+..+.+...
T Consensus       228 ~P~ql~el~~gy~~m~~  244 (569)
T PRK04778        228 LPDQLQELKAGYRELVE  244 (569)
T ss_pred             hhHHHHHHHHHHHHHHH
Confidence            33444444444443333

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.70  E-value=0.00057  Score=76.07  Aligned_cols=46  Identities=20%  Similarity=0.243  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          452 EDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVA  497 (910)
Q Consensus       452 k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~  497 (910)
                      +..+..++.+++..++++......+.-....+..++++++.+|+..
T Consensus        49 ~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e   94 (312)
T PF00038_consen   49 KEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE   94 (312)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence            4556678888899999999999999999999999999999999985

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.65  E-value=0.0018  Score=77.86  Aligned_cols=210  Identities=15%  Similarity=0.205  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 002544          394 DKKKLADDYTSRINNLQGENISLRE---KSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAE  470 (910)
Q Consensus       394 el~~~lee~~~~~~~l~~~~~~Le~---e~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e  470 (910)
                      +++.++...++.+.+++.++..++.   ...+|..+++-....+.-..++.+..-      -.++...+..+...+++.+
T Consensus       681 ~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e------~~~~~~~~~~~~e~v~e~~  754 (1174)
T KOG0933|consen  681 QAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNE------FHKLLDDLKELLEEVEESE  754 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh------HhhHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555543   234444455444444444444443211      2234555666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          471 ARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEH  550 (910)
Q Consensus       471 ~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~lek~~~~~e~~~~e~q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~  550 (910)
                      ..+....+.....+.++..+    +.....+++.-++....+.+.++.+..+.++...+++....    +...+..+.++
T Consensus       755 ~~Ike~~~~~k~~~~~i~~l----E~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~----e~e~l~lE~e~  826 (1174)
T KOG0933|consen  755 QQIKEKERALKKCEDKISTL----EKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKREN----EYERLQLEHEE  826 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence            66666555555555555422    22222344455555555555555555555554444443333    44455556666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          551 AEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK  617 (910)
Q Consensus       551 ~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~  617 (910)
                      ++.++...+..+......|+.+..++..+...+.........+...+......++....++..+-..
T Consensus       827 l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~  893 (1174)
T KOG0933|consen  827 LEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTS  893 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhH
Confidence            6666666666666666666666666666666666666666666666666666666666555444333

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.64  E-value=0.00066  Score=78.54  Aligned_cols=131  Identities=16%  Similarity=0.252  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          452 EDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFS  531 (910)
Q Consensus       452 k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~lek~~~~~e~~~~e~q~~~~~~~~E~~  531 (910)
                      +..+..++..+..-+++.......++.....++.++++++.+|+.+.......                           
T Consensus        87 k~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~---------------------------  139 (546)
T KOG0977|consen   87 KAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGA---------------------------  139 (546)
T ss_pred             hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh---------------------------
Confidence            33455677788888888888899999999999999999998888853211110                           


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          532 STLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDK  611 (910)
Q Consensus       532 ~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~  611 (910)
                            .+.+..+...+..++.++..++..+..++..+..+.+++..|..+|..+..+++....-...++..+..|..++
T Consensus       140 ------re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel  213 (546)
T KOG0977|consen  140 ------REKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEEL  213 (546)
T ss_pred             ------HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence                  11112222223333333444444445555555555566666666666666666666655555666666555555


Q ss_pred             HHHH
Q 002544          612 VYLE  615 (910)
Q Consensus       612 ~el~  615 (910)
                      .-+.
T Consensus       214 ~f~~  217 (546)
T KOG0977|consen  214 AFLK  217 (546)
T ss_pred             HHHH
Confidence            5554

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.62  E-value=0.0084  Score=78.59  Aligned_cols=15  Identities=7%  Similarity=0.036  Sum_probs=7.6

Q ss_pred             CCCChHHHHHHHHhH
Q 002544          318 HGPGKWQKLATFLQQ  332 (910)
Q Consensus       318 ~gp~k~~~l~~fl~~  332 (910)
                      .||.=+.+...|+..
T Consensus       263 I~~~~~~~aad~~r~  277 (1486)
T PRK04863        263 ITESTNYVAADYMRH  277 (1486)
T ss_pred             hhhhhhhhHHHHhhC
Confidence            344444555556553

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.56  E-value=0.0027  Score=75.26  Aligned_cols=54  Identities=17%  Similarity=0.278  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhhHHH
Q 002544          416 LREKSSSLSKTVDSLKNEISDWKRKYDQ------VLTKQKAMEDQVCSEIEVLKSRSTAA  469 (910)
Q Consensus       416 Le~e~~~L~~qle~~k~e~~~~kkk~Ee------~~~e~~~~k~kl~~eleel~~~~ee~  469 (910)
                      |...+.+|+..|+.++.+..+-+.++-+      .++.+.+.+.++..+..+|++++..+
T Consensus       229 Lr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~ra  288 (1243)
T KOG0971|consen  229 LRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRA  288 (1243)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555666666666666655544444321      11334444444444444444444333

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=98.54  E-value=0.0064  Score=72.92  Aligned_cols=245  Identities=15%  Similarity=0.193  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          553 QCLTTLRLELKAAESK-----MRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEE  627 (910)
Q Consensus       553 ~ei~~l~~~lee~~~k-----i~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE  627 (910)
                      .++..+...+......     +...+.....+..+|..|-..++..-......++....+...+.++......+...++.
T Consensus       252 ~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~  331 (560)
T PF06160_consen  252 EEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELER  331 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444443     35556667777777777777777777777777777777777777777765555555555


Q ss_pred             HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002544          628 VQERCKVAEK---EAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELE  704 (910)
Q Consensus       628 ~e~~l~~~e~---e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~  704 (910)
                      +.....-.+.   ....+...+..+..........+.+-..-.+.+...+..+...+..++..-..+...+..++..+..
T Consensus       332 v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~  411 (560)
T PF06160_consen  332 VSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKE  411 (560)
T ss_pred             HHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4443321111   1223333344444444444444444444466777777777777888888888888888888888887


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH--------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          705 ALSKVALLEARVEEREKEIESL--------LESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEM  776 (910)
Q Consensus       705 ~~~~~~elE~rl~e~eee~e~l--------~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l  776 (910)
                      +...+..+...+.+....++..        ...........|..+...|..-+=.       .+....++..+...|+.+
T Consensus       412 Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pin-------m~~v~~~l~~a~~~v~~L  484 (560)
T PF06160_consen  412 AREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPIN-------MDEVNKQLEEAEDDVETL  484 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcC-------HHHHHHHHHHHHHHHHHH
Confidence            7777777777666665555422        0011111222333333333333333       233444455555555555


Q ss_pred             HHHHhhhhchhhhhcchhhhhhccccccccc
Q 002544          777 QQELTKARLNETALGSKLRAVSHGKRARADD  807 (910)
Q Consensus       777 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  807 (910)
                      ......+--+.+ |--+  ++.+|-|.|...
T Consensus       485 ~~~t~~li~~A~-L~E~--~iQYaNRYR~~~  512 (560)
T PF06160_consen  485 EEKTEELIDNAT-LAEQ--LIQYANRYRSDN  512 (560)
T ss_pred             HHHHHHHHHHHH-HHHH--HHHHHhcccCCC
Confidence            555544333332 2222  377899888766

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=98.52  E-value=0.0088  Score=73.78  Aligned_cols=19  Identities=32%  Similarity=0.600  Sum_probs=10.9

Q ss_pred             HHHHHH--HHHHhccCCCccc
Q 002544          136 AGLDAL--TKFVFERTRPKQV  154 (910)
Q Consensus       136 ~~~~~l--~~~i~~~~~pK~i  154 (910)
                      -.++.+  ..||...++|-.+
T Consensus       186 lAldslH~mgyVHRDiKPDNv  206 (1317)
T KOG0612|consen  186 LALDSLHSMGYVHRDIKPDNV  206 (1317)
T ss_pred             HHHHHHHhccceeccCCccee
Confidence            334444  3566667787664

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=98.52  E-value=0.0078  Score=73.09  Aligned_cols=133  Identities=12%  Similarity=0.146  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          553 QCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERC  632 (910)
Q Consensus       553 ~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l  632 (910)
                      .+|..|..++.+....+...+.-+..-...+.....-+..+...    .++...++...+...+.|.........++..|
T Consensus      1511 eqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a----~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai 1586 (1758)
T KOG0994|consen 1511 EQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERA----RSRAEDVKGQAEDVVEALEEADVAQGEAQDAI 1586 (1758)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666667777776666666666555555544433322222221    22222222333333333333333344444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002544          633 KVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVN  696 (910)
Q Consensus       633 ~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele  696 (910)
                      +.+...+.-+...+.+.       +++-...++.+.....++.++...++.|.......-.+..
T Consensus      1587 ~~a~~~~~~a~~~l~kv-------~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~ 1643 (1758)
T KOG0994|consen 1587 QGADRDIRLAQQLLAKV-------QEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAK 1643 (1758)
T ss_pred             HhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            44443333333333333       3333333444444445555555555555554444333333

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=98.52  E-value=0.0056  Score=71.18  Aligned_cols=187  Identities=16%  Similarity=0.218  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          576 ISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAA  655 (910)
Q Consensus       576 ~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~  655 (910)
                      +...+.++.||..++......-..+.+.+..+..++..-+-+..++...+..       +.-+...+.........++..
T Consensus       445 lq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nk-------LslEkk~laQE~~~~~~elKk  517 (786)
T PF05483_consen  445 LQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNK-------LSLEKKQLAQETSDMALELKK  517 (786)
T ss_pred             HHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhhHHH
Confidence            4455556666666666666555566666666555555433332222223333       322333333333333333333


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHH
Q 002544          656 ARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKV------------------ALLEARVE  717 (910)
Q Consensus       656 ~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~------------------~elE~rl~  717 (910)
                      .+..       +.....+-++.-.++++|+.....|..+++.++..+......+                  ...++.+.
T Consensus       518 ~qed-------i~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k  590 (786)
T PF05483_consen  518 QQED-------INNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMK  590 (786)
T ss_pred             HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHH
Confidence            3333       3333444455555666666666666666666665433222211                  12233334


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          718 EREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQ  777 (910)
Q Consensus       718 e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~  777 (910)
                      -++..+..+ ++..+....-|+.|+..+.+..+..+.-..+...+...+.+++..++.+.
T Consensus       591 ~lenk~~~L-rKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~k  649 (786)
T PF05483_consen  591 ILENKCNNL-RKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLK  649 (786)
T ss_pred             HHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445555 44444444466777777777766666666665555555555555554443

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.51  E-value=0.0012  Score=76.35  Aligned_cols=145  Identities=20%  Similarity=0.241  Sum_probs=76.3

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          456 CSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLA  535 (910)
Q Consensus       456 ~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~lek~~~~~e~~~~e~q~~~~~~~~E~~~~~~  535 (910)
                      ..+|.+|..|+..--+++-.|+.+-..+..+++.++...-......++-.+-....+.+.+++.....    +.++..+.
T Consensus        41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~r----a~~e~ei~  116 (546)
T KOG0977|consen   41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARER----AKLEIEIT  116 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHH----HHHHHHHH
Confidence            36777888888888888888888888888888866654333222333333333333333333332222    33444455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          536 EKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREA  604 (910)
Q Consensus       536 ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~  604 (910)
                      .+..++.+++.++...+.........+......+..++.++..+...+..+..++..+..+...+...+
T Consensus       117 kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l  185 (546)
T KOG0977|consen  117 KLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREEL  185 (546)
T ss_pred             HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            555566666666665544444444444444444444444444444444444444444443333333333

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=98.50  E-value=0.0087  Score=72.70  Aligned_cols=43  Identities=35%  Similarity=0.321  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhchhhhhcchhhh
Q 002544          754 AANAMAERLSLE----VQSAQAKLDEMQQELTKARLNETALGSKLRA  796 (910)
Q Consensus       754 ea~~r~e~l~~q----l~~~k~~i~~l~~e~~~~~~~~~~~~~~~~~  796 (910)
                      .+.+|.+.|+.+    +..++++++.|..-....-.||-+|+.|--.
T Consensus      1686 ~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~ae 1732 (1758)
T KOG0994|consen 1686 AARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAE 1732 (1758)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            444555555554    5566667766665555556677777766544

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.49  E-value=0.01  Score=72.91  Aligned_cols=64  Identities=16%  Similarity=0.214  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          553 QCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQ  616 (910)
Q Consensus       553 ~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~  616 (910)
                      ..|..++.++..+..++..++..+...+..|+.+...+......+...++.++.+..++.+++.
T Consensus       661 ~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n  724 (1074)
T KOG0250|consen  661 DEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKN  724 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4456666666666666666666666666666666666666666666666666666666666655

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=98.44  E-value=0.014  Score=72.07  Aligned_cols=24  Identities=21%  Similarity=0.069  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          741 LEDLLESERRSRAAANAMAERLSL  764 (910)
Q Consensus       741 Le~~le~e~~~~~ea~~r~e~l~~  764 (910)
                      ++..+..+...+.+++++.+.-..
T Consensus       791 ~Ekq~~~~~~~l~~~K~~~e~~~~  814 (1317)
T KOG0612|consen  791 LEKQLKKLLDELAELKKQLEEENA  814 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444443333

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.34  E-value=0.038  Score=72.62  Aligned_cols=35  Identities=11%  Similarity=0.246  Sum_probs=21.3

Q ss_pred             HHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhhh
Q 002544          281 IQSMERKLRAACHSSDASIDNVVKVLDGLISEYET  315 (910)
Q Consensus       281 l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Y~~  315 (910)
                      +..+..-|........++++..+..+..-+.+|.-
T Consensus       210 ~~~i~~fl~~yll~e~~~v~~~i~~m~~~l~~~r~  244 (1486)
T PRK04863        210 SSAITRSLRDYLLPENSGVRKAFQDMEAALRENRM  244 (1486)
T ss_pred             HHhHHHHHHHHcCCCChhhhHHHHHHHHHHHHHHH
Confidence            34456666665555555566666667777777764

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=98.30  E-value=0.018  Score=67.12  Aligned_cols=89  Identities=18%  Similarity=0.276  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          694 EVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKL  773 (910)
Q Consensus       694 Ele~~~~~~~~~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i  773 (910)
                      +++.++....++.....+.+-+++.+-.++-+||.+-.++--.-|++-.++|..-...=.++..-+..|-.+|..++..|
T Consensus       676 EveK~k~~a~EAvK~q~EtdlrCQhKIAeMVALMEKHK~qYDkiVEEkDaEL~~~k~KE~E~~s~k~sLE~ELs~lk~el  755 (786)
T PF05483_consen  676 EVEKAKLTADEAVKLQEETDLRCQHKIAEMVALMEKHKHQYDKIVEEKDAELGLYKKKEQEQSSHKASLELELSNLKNEL  755 (786)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            44444444455555556788888888888888887777877667888888887776666777777788888888999999


Q ss_pred             HHHHHHHhh
Q 002544          774 DEMQQELTK  782 (910)
Q Consensus       774 ~~l~~e~~~  782 (910)
                      ..+..++..
T Consensus       756 ~slK~QLk~  764 (786)
T PF05483_consen  756 SSLKKQLKT  764 (786)
T ss_pred             HHHHHHHHH
Confidence            888877763

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=98.22  E-value=0.025  Score=65.68  Aligned_cols=91  Identities=26%  Similarity=0.302  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 002544          398 LADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAR  477 (910)
Q Consensus       398 ~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~~~~~le  477 (910)
                      ....+......++.+...++..+..|..-+.....++...+..|++.+....+.-.-+..+++..+.++..++..+..+.
T Consensus       183 ~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~  262 (629)
T KOG0963|consen  183 REAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLR  262 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455666666777777788888888888888888899999998877765555667788899999999999999999888


Q ss_pred             HHHHHHHHHHH
Q 002544          478 EQALSAQEEVE  488 (910)
Q Consensus       478 ~~~~~~q~Ele  488 (910)
                      .++..+.+...
T Consensus       263 ~ql~~~N~~~~  273 (629)
T KOG0963|consen  263 EQLAKANSSKK  273 (629)
T ss_pred             HHHHhhhhhhh
Confidence            88776665555

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.21  E-value=0.027  Score=66.23  Aligned_cols=74  Identities=20%  Similarity=0.310  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          535 AEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIME  608 (910)
Q Consensus       535 ~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le  608 (910)
                      .+-++++-.+..+..+++.++..|+..+..+..++...+-.+.....+|+.+..+.+.....+..+..+++++.
T Consensus       426 ~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q  499 (1118)
T KOG1029|consen  426 NREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQ  499 (1118)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444445555555555555555555555555555555555555444444444444433333333

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.19  E-value=0.039  Score=66.71  Aligned_cols=157  Identities=18%  Similarity=0.206  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Q 002544          338 ILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKR---------YDDAINDKKKLADDYTSRINN  408 (910)
Q Consensus       338 il~~~~rl~~~~eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k~---------le~~i~el~~~lee~~~~~~~  408 (910)
                      +++-.+.-+.+.+.+++...-+..++..+-..+.+++..++....++..+         .++-=.=+..++..+.+.+++
T Consensus       329 ~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~  408 (1200)
T KOG0964|consen  329 VLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGIND  408 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhh
Confidence            34444455556666777777777777888888888888887765553321         111111223455555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002544          409 LQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVE  488 (910)
Q Consensus       409 l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Ele  488 (910)
                      ....-..++.++.++..++...-.++..+..    .+.+.+..-..+.+++..+++.++++..+...+++.=..+++.++
T Consensus       409 ~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~----si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~  484 (1200)
T KOG0964|consen  409 TKEQENILQKEIEDLESELKEKLEEIKELES----SINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIA  484 (1200)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555533333332222    222222223445566677777777777777777776666777666


Q ss_pred             HHHHHHHHHH
Q 002544          489 EWKRKYGVAV  498 (910)
Q Consensus       489 e~~~k~e~~~  498 (910)
                      .++..+..+.
T Consensus       485 ~~~~dl~~~~  494 (1200)
T KOG0964|consen  485 NLEEDLSRAE  494 (1200)
T ss_pred             HHHHHHHHHH
Confidence            5555444443

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.15  E-value=0.046  Score=66.09  Aligned_cols=49  Identities=27%  Similarity=0.302  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 002544          737 TVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARL  785 (910)
Q Consensus       737 ~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~~e~~~~~~  785 (910)
                      .+....++++.+......+...+..+..++++.++.+.++...++..+.
T Consensus       848 el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~  896 (1200)
T KOG0964|consen  848 ELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKN  896 (1200)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555555555555555555666666666555554443

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.15  E-value=0.0024  Score=77.17  Aligned_cols=67  Identities=13%  Similarity=0.234  Sum_probs=26.8

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          357 MLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSL  423 (910)
Q Consensus       357 ~~e~~~le~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L  423 (910)
                      +.++..+..++..+..++...+.....+.+.....+.+++.+++.+......+..++..++.++.++
T Consensus       180 ~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l  246 (562)
T PHA02562        180 NQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNL  246 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444444433333333332222223333444444444444444444444444444444333

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=98.14  E-value=0.05  Score=66.00  Aligned_cols=53  Identities=15%  Similarity=0.241  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          385 LKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY  441 (910)
Q Consensus       385 ~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~  441 (910)
                      +..+..++.++..+++.+...+........++..-    ..+++.+..+++.|-..|
T Consensus       200 ll~lr~eLddleae~~klrqe~~e~l~ea~ra~~y----rdeldalre~aer~d~~y  252 (1195)
T KOG4643|consen  200 LLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRY----RDELDALREQAERPDTTY  252 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHhhhcCCCcc
Confidence            44555566666555555555555555555554443    333444444444444444

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=98.14  E-value=1.8e-06  Score=106.59  Aligned_cols=32  Identities=25%  Similarity=0.313  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002544          751 SRAAANAMAERLSLEVQSAQAKLDEMQQELTK  782 (910)
Q Consensus       751 ~~~ea~~r~e~l~~ql~~~k~~i~~l~~e~~~  782 (910)
                      ........+..|..++..++..+..++..++.
T Consensus       504 ~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~  535 (722)
T PF05557_consen  504 ELNELQKEIEELERENERLRQELEELESELEK  535 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445556666666677777777777766664

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.09  E-value=0.091  Score=67.13  Aligned_cols=9  Identities=22%  Similarity=0.534  Sum_probs=3.2

Q ss_pred             HHHHHHHHH
Q 002544          367 MKLLKKQLE  375 (910)
Q Consensus       367 ~e~l~k~le  375 (910)
                      ++.+..+..
T Consensus       234 ~e~l~~~~~  242 (908)
T COG0419         234 IEALEERLA  242 (908)
T ss_pred             HHHHHHHHH
Confidence            333333333

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=98.08  E-value=0.0078  Score=59.96  Aligned_cols=154  Identities=23%  Similarity=0.315  Sum_probs=98.5

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          456 CSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLA  535 (910)
Q Consensus       456 ~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~lek~~~~~e~~~~e~q~~~~~~~~E~~~~~~  535 (910)
                      .+.+..+..+....+++...++.++..++.=.++.-+||+..+.        ....++..++....              
T Consensus        45 er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVar--------kL~iiE~dLE~~ee--------------  102 (205)
T KOG1003|consen   45 ERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVAR--------KLVIIEGELERAEE--------------  102 (205)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHHHHHHH--------------
Confidence            35566777888888888888999999888888888889988542        22333322222211              


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          536 EKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLE  615 (910)
Q Consensus       536 ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~  615 (910)
                          .......++.++..++..+.+.+..+...-..+......+..+|..+...+..+.......++.+..|+.++..|+
T Consensus       103 ----raE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE  178 (205)
T KOG1003|consen  103 ----RAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLE  178 (205)
T ss_pred             ----HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHH
Confidence                1111233333444444445555555555555555566666666777777777777777777788888888888887


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 002544          616 QKYKSEFERFEEVQERCKVA  635 (910)
Q Consensus       616 ~~l~e~~~~~eE~e~~l~~~  635 (910)
                      ..+.....++..+...|..+
T Consensus       179 ~kl~~~k~ky~~~~~eLD~~  198 (205)
T KOG1003|consen  179 EKLEEAKEKYEEAKKELDET  198 (205)
T ss_pred             HhhHHHHHHHHHHHHHHHHH
Confidence            77666666666666655554

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.04  E-value=0.062  Score=63.30  Aligned_cols=78  Identities=18%  Similarity=0.251  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          534 LAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDK  611 (910)
Q Consensus       534 ~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~  611 (910)
                      ++.+...+..+..++-..+..+...+..+++....++....++..|+.+|.++...+..+.-+.+.|..+++....-.
T Consensus       446 letLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~  523 (1118)
T KOG1029|consen  446 LETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAH  523 (1118)
T ss_pred             HHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhc
Confidence            344445555555566556666677777777777777777777777777777777777666666666665555444433

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=98.03  E-value=1e-06  Score=108.40  Aligned_cols=22  Identities=5%  Similarity=0.057  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHH-HHHHHhhcccC
Q 002544          192 EAECRRAYDSA-TETYMSTFDRS  213 (910)
Q Consensus       192 ~~e~~~a~~~A-~~~Y~~~m~~~  213 (910)
                      ...|...+-.+ ..+|...+...
T Consensus        68 r~~NLk~l~~~i~~yy~e~L~~~   90 (713)
T PF05622_consen   68 RVSNLKKLLRNIKSYYQEELGQQ   90 (713)
T ss_dssp             HHHHHHHHHHHHHHHHHTTT---
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCC
Confidence            44444444444 44455555553

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=98.02  E-value=0.081  Score=63.99  Aligned_cols=113  Identities=19%  Similarity=0.209  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          347 DQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKT  426 (910)
Q Consensus       347 ~~~eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~q  426 (910)
                      ...+.+++.++..+....++.+.+.....++...    ...++.+...++..+.++.-.-..+-...+.|+.++-.|.++
T Consensus        37 ~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~----~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKq  112 (717)
T PF09730_consen   37 LELENELKQLRQELSNVQAENERLSQLNQELRKE----CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQ  112 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            4567778888888888888888888887777665    567788888888888888888888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 002544          427 VDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEA  471 (910)
Q Consensus       427 le~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~  471 (910)
                      ++.+++.--+    ||    .++...+.+..+++-|+.+++++..
T Consensus       113 vs~Lk~sQve----fE----~~Khei~rl~Ee~~~l~~qlee~~r  149 (717)
T PF09730_consen  113 VSVLKQSQVE----FE----GLKHEIKRLEEEIELLNSQLEEAAR  149 (717)
T ss_pred             HHHHHHhHHH----HH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988753211    22    1333355566666666666666655

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.98  E-value=0.0088  Score=72.74  Aligned_cols=92  Identities=14%  Similarity=0.237  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          415 SLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKY  494 (910)
Q Consensus       415 ~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~  494 (910)
                      .|+.++..|..+|...++.=.+++.++....    .....+..+|..++...+.++.++..|..++..=.+.+..+-++|
T Consensus       422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~----~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL  497 (697)
T PF09726_consen  422 RLEADVKKLRAELQSSRQSEQELRSQISSLT----NNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRL  497 (697)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455555544444444444422111    113345667777777777777777777777776666666666666


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 002544          495 GVAVREAKAALEKAAIV  511 (910)
Q Consensus       495 e~~~~~~k~~lek~~~~  511 (910)
                      -++ .+.|+.+|++...
T Consensus       498 ~eE-~~~R~~lEkQL~e  513 (697)
T PF09726_consen  498 AEE-RRQRASLEKQLQE  513 (697)
T ss_pred             HHH-HHHHHHHHHHHHH
Confidence            663 3566666655543

; GO: 0016021 integral to membrane

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.97  E-value=0.025  Score=67.12  Aligned_cols=14  Identities=21%  Similarity=0.287  Sum_probs=7.5

Q ss_pred             hCCCCceeeccCCC
Q 002544          100 LFPDRECFTLVRPL  113 (910)
Q Consensus       100 ~F~~~~cf~l~~P~  113 (910)
                      +|.+...+-.|.|.
T Consensus       354 ~F~~v~~p~~~~Pr  367 (970)
T KOG0946|consen  354 EFADVTAPSIPNPR  367 (970)
T ss_pred             HHhhccCCCCCCCc
Confidence            45555555555443

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.95  E-value=0.11  Score=63.29  Aligned_cols=131  Identities=18%  Similarity=0.178  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002544          631 RCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVA  710 (910)
Q Consensus       631 ~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~  710 (910)
                      +++....++......++.+..+.+.+..++...+..+......++.+...+..+...+...+.+...+...+.+...+..
T Consensus       802 ~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~  881 (1174)
T KOG0933|consen  802 RAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQR  881 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Confidence            33333333333344444444455555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          711 LLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERL  762 (910)
Q Consensus       711 elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~l  762 (910)
                      ....++..+....+.. .+........++.|...+.......+.+..+++.+
T Consensus       882 ~~dt~i~~~~~~~e~~-~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l  932 (1174)
T KOG0933|consen  882 DIDTEISGLLTSQEKC-LSEKSDGELERKKLEHEVTKLESEKANARKEVEKL  932 (1174)
T ss_pred             hhhHHHhhhhhHHHHH-HHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHH
Confidence            5555555555555555 34444444566777777777666666666666663

>PRK11637 AmiB activator; Provisional

Probab=97.93  E-value=0.014  Score=67.89  Aligned_cols=70  Identities=14%  Similarity=0.199  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          545 ATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYL  614 (910)
Q Consensus       545 ~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el  614 (910)
                      +.++.....++..++..+..+...+..+...+..+..+|..+..++......+..++.++..++.++...
T Consensus        53 ~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~  122 (428)
T PRK11637         53 QQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ  122 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333343334444444444444444433333333333333333333333333333

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.93  E-value=0.012  Score=71.56  Aligned_cols=86  Identities=15%  Similarity=0.237  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          536 EKEEEMKEKATKIEHAEQCLTTLRLEL-------KAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIME  608 (910)
Q Consensus       536 ele~ei~~~~~kl~~~e~ei~~l~~~l-------ee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le  608 (910)
                      .++.+++.++.++....+-=.+|+..+       ..+...+..+..+...|+..+..|......-...+..+|++++...
T Consensus       422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~  501 (697)
T PF09726_consen  422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER  501 (697)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555554443333333333332       2333345555555555555555555555555555566666655555


Q ss_pred             HHHHHHHHHHHHH
Q 002544          609 QDKVYLEQKYKSE  621 (910)
Q Consensus       609 ~e~~el~~~l~e~  621 (910)
                      ..+..++.++.++
T Consensus       502 ~~R~~lEkQL~eE  514 (697)
T PF09726_consen  502 RQRASLEKQLQEE  514 (697)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555554333

; GO: 0016021 integral to membrane

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=97.93  E-value=0.088  Score=61.32  Aligned_cols=243  Identities=14%  Similarity=0.164  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          534 LAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVE----ISSQKLETKELSEKLEAVNAKAQSFEREARIMEQ  609 (910)
Q Consensus       534 ~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e----~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~  609 (910)
                      ...+..+-...+.++..++..+..++..++.....+..+...    ......++.-+...++.++..+..+++++..|..
T Consensus       184 e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~  263 (629)
T KOG0963|consen  184 EAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLRE  263 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444455555555566666666666666555554444    6677777888888888888888888888877777


Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          610 DKVYLEQKYKSEF-ERFEEVQERCKVAEKEAKKATELADRE----RAEAAAARKGKSEFENLAMERMAVIERVQRQIESL  684 (910)
Q Consensus       610 e~~el~~~l~e~~-~~~eE~e~~l~~~e~e~~~~~~~~e~l----~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~L  684 (910)
                      ++........-.. ..++.....+...+.++.++...+...    ..+++.....++.+.       .++......++.+
T Consensus       264 ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le-------~~l~~~~~~leel  336 (629)
T KOG0963|consen  264 QLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALE-------KELKAKISELEEL  336 (629)
T ss_pred             HHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence            7765544321110 011111112222222222221111111    111111122222222       2222222222222


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          685 ERQKTDLTNEVNRIRESELEALSK-VA--LLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAER  761 (910)
Q Consensus       685 e~e~~~Le~Ele~~~~~~~~~~~~-~~--elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~  761 (910)
                      ...+..- .+++.++.++.-+..- +.  +-...-.+-..-++.+|-.++.....++-.|...+......++++..+.+.
T Consensus       337 ~~kL~~~-sDYeeIK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~~~e  415 (629)
T KOG0963|consen  337 KEKLNSR-SDYEEIKKELSILKAIEFGDSEEANDEDETAKTLESLLLEKNRKLQNENASLRVANSGLSGRITELSKKGEE  415 (629)
T ss_pred             HHHHhhh-ccHHHHHHHHHHHHHhhcCCcccccccccccchHHHHHHHHHhhhhHHHHHHhccccccchhHHHHHhhhhh
Confidence            2221111 3455555444332221 00  000000022245666666777777778888888888888888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhh
Q 002544          762 LSLEVQSAQAKLDEMQQELTKAR  784 (910)
Q Consensus       762 l~~ql~~~k~~i~~l~~e~~~~~  784 (910)
                      +.......+.-|..+++.+..+.
T Consensus       416 l~~~~~~~ke~i~klE~dl~~~~  438 (629)
T KOG0963|consen  416 LEAKATEQKELIAKLEQDLLKVQ  438 (629)
T ss_pred             hHHHHHHHHHHHHHHHhhHhhcc
Confidence            98888888888888777777655

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=97.91  E-value=0.093  Score=61.11  Aligned_cols=41  Identities=17%  Similarity=0.080  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002544          741 LEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELT  781 (910)
Q Consensus       741 Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~~e~~  781 (910)
                      |.++....+..+..+..|.-.+..++..+|..++.+++...
T Consensus       709 lraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~  749 (961)
T KOG4673|consen  709 LRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRAN  749 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444555555555555555555554443

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=97.91  E-value=0.051  Score=57.95  Aligned_cols=98  Identities=12%  Similarity=0.136  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          553 QCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERC  632 (910)
Q Consensus       553 ~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l  632 (910)
                      ..++.+....+-+..++...+.....|+.++......+.+..-.+..+.+.+.....++.+++..+..+..++...-...
T Consensus       137 ~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kq  216 (305)
T PF14915_consen  137 SDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQ  216 (305)
T ss_pred             chHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            34556666666666677777777777777777777777777777888888888888888888888888777777776666


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 002544          633 KVAEKEAKKATELADRER  650 (910)
Q Consensus       633 ~~~e~e~~~~~~~~e~l~  650 (910)
                      +.++..+..+...-.-++
T Consensus       217 es~eERL~QlqsEN~LLr  234 (305)
T PF14915_consen  217 ESLEERLSQLQSENMLLR  234 (305)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            666555555444433333

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.89  E-value=0.057  Score=64.58  Aligned_cols=54  Identities=13%  Similarity=0.189  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          575 EISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEV  628 (910)
Q Consensus       575 e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~  628 (910)
                      .+......|-++...+..-...|...-...+.++.+++.+..++..-....+++
T Consensus       485 ~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dEl  538 (594)
T PF05667_consen  485 NRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDEL  538 (594)
T ss_pred             CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            366777788888888888888888888888888888888877765555544444

>PRK11637 AmiB activator; Provisional

Probab=97.88  E-value=0.022  Score=66.29  Aligned_cols=78  Identities=15%  Similarity=0.256  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          534 LAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDK  611 (910)
Q Consensus       534 ~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~  611 (910)
                      +..+..++.....++.....++..+..++..+..++..+...+..++.+|..+..++......+..++..+......+
T Consensus        49 l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l  126 (428)
T PRK11637         49 LKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL  126 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333334444444444444444444444444444444444444444444444444443333

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.87  E-value=0.13  Score=61.77  Aligned_cols=14  Identities=29%  Similarity=0.192  Sum_probs=8.1

Q ss_pred             hhHHHHHHHHHhcC
Q 002544          869 FTVQKLKQELTKHN  882 (910)
Q Consensus       869 ~~~~~~~~~~~~~~  882 (910)
                      =|++.+=|-|.+..
T Consensus       573 pTAqqImqLL~eiQ  586 (617)
T PF15070_consen  573 PTAQQIMQLLQEIQ  586 (617)
T ss_pred             chHHHHHHHhHhcC
Confidence            46666666555543

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.84  E-value=0.11  Score=59.95  Aligned_cols=209  Identities=15%  Similarity=0.172  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Q 002544          387 RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQ------VLTKQKAMEDQVCSEIE  460 (910)
Q Consensus       387 ~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee------~~~e~~~~k~kl~~ele  460 (910)
                      .++.-++-.+.-+.+.........+.+..+..++.....+++.++.+...++...+.      .++.+...+.++.+.+.
T Consensus       270 ~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~  349 (581)
T KOG0995|consen  270 RLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELN  349 (581)
T ss_pred             HHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            344444444444445555555555566666666666666666666666666655542      22344444555555555


Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          461 VLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAA-LEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEE  539 (910)
Q Consensus       461 el~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~-lek~~~~~e~~~~e~q~~~~~~~~E~~~~~~ele~  539 (910)
                      .+...++.+...+-.+.-.....-.+++..-.+|.....+.+.. .+.... +...-.......-.+.+-+   .--+..
T Consensus       350 ~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n-~~~~pe~~~~~~~d~k~~V---~~~l~e  425 (581)
T KOG0995|consen  350 KIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKN-LERNPERAATNGVDLKSYV---KPLLKE  425 (581)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCcCCccCccccccchhHh---HHHHHH
Confidence            55555555544433333222222222222222333322221111 000000 0000000000000000111   111223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          540 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQS  599 (910)
Q Consensus       540 ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~  599 (910)
                      .+......+-+.+.+...++..+......|.+.......++.++..+.+..........+
T Consensus       426 l~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~ee  485 (581)
T KOG0995|consen  426 LLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEE  485 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444555556666666666666666666666666666666665555444433

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.83  E-value=3.3e-05  Score=95.53  Aligned_cols=69  Identities=28%  Similarity=0.396  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          552 EQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKS  620 (910)
Q Consensus       552 e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e  620 (910)
                      ..++..+...+..+...+..++.++..+..++..+...+......++.++++.--+..++..|+.++.+
T Consensus       356 ~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~s  424 (722)
T PF05557_consen  356 TEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKS  424 (722)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555555555555555556666666666656666666666666666666666666544

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.80  E-value=0.15  Score=60.19  Aligned_cols=121  Identities=22%  Similarity=0.242  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 002544          669 ERMAVIERVQRQIESLERQKTDLTNEVNRIRESELE-------ALSKVALLEARVEEREKEIESLLESNNEQRASTVKKL  741 (910)
Q Consensus       669 e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~-------~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~L  741 (910)
                      +....|.......+.++..+.+|..++.+....+.-       +...+..+.+++..++++-..+  +  .+.  ..+.|
T Consensus       458 ~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rL--r--~~~--e~~~l  531 (716)
T KOG4593|consen  458 ELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRL--R--AQL--ERRLL  531 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH--H--HHH--HHHHH
Confidence            344444444444445555555555555444443322       2222345555555555555555  3  121  22333


Q ss_pred             HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhhcchhh
Q 002544          742 EDLLES------------ERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLR  795 (910)
Q Consensus       742 e~~le~------------e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~~e~~~~~~~~~~~~~~~~  795 (910)
                      +...++            ..+.+.....+.+.|++++..++..+..+.+.-..++--++|-+|=+-
T Consensus       532 ~gd~~~~~~rVl~~~~npt~~~~~~~k~~~e~LqaE~~~lk~~l~~le~~~~~~~d~~i~~~s~~~  597 (716)
T KOG4593|consen  532 QGDYEENITRVLHMSTNPTSKARQIKKNRLEELQAELERLKERLTALEGDKMQFRDGEIAVHSLLA  597 (716)
T ss_pred             hhhhhhhccceeeecCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHhhhhc
Confidence            332222            234666778888999999999999999999988888888887766443

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=0.18  Score=60.54  Aligned_cols=78  Identities=18%  Similarity=0.163  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          540 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK  617 (910)
Q Consensus       540 ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~  617 (910)
                      ++....+.++..+..+..+-.++.+.+.+.-.+-.++.........|...+......+..+......+...+..++++
T Consensus       455 e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq  532 (698)
T KOG0978|consen  455 EMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQ  532 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444445555555555555555555444444444444444444444444444444444444444444444443

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.75  E-value=0.19  Score=59.94  Aligned_cols=42  Identities=12%  Similarity=0.137  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          400 DDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY  441 (910)
Q Consensus       400 ee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~  441 (910)
                      +++.+....+-..+.+++...+.+......++.+.++...++
T Consensus       653 e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~v  694 (970)
T KOG0946|consen  653 EELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEV  694 (970)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333444444444444444444433333333333333

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=97.74  E-value=0.075  Score=54.84  Aligned_cols=139  Identities=19%  Similarity=0.218  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          348 QIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTV  427 (910)
Q Consensus       348 ~~eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~ql  427 (910)
                      ..+.+...+...+..+......+...+++.+..+++.+...+.........+.........+...+++++.-.++|.+..
T Consensus        20 ~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ry   99 (207)
T PF05010_consen   20 EKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRY   99 (207)
T ss_pred             HhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHH
Confidence            33455667777777777777777777777777655555444444333345555555666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 002544          428 DSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAA----REQALSAQEEVEEWKRKYGVA  497 (910)
Q Consensus       428 e~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~~~~~l----e~~~~~~q~Elee~~~k~e~~  497 (910)
                      +..+.-+..+++--+           .|..-+.+...++...+.++..+    ++.+..+..+++.++.++...
T Consensus       100 ek~K~vi~~~k~NEE-----------~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e  162 (207)
T PF05010_consen  100 EKQKEVIEGYKKNEE-----------TLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAE  162 (207)
T ss_pred             HHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            666666666554322           22333444444444444444433    455555555555555555443

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=97.73  E-value=0.22  Score=59.93  Aligned_cols=56  Identities=11%  Similarity=0.162  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          349 IGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINN  408 (910)
Q Consensus       349 ~eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~  408 (910)
                      +...+..+...+..++.++..+...+..+...    .......+.++.....++.+.+..
T Consensus        99 a~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~----e~~nr~~i~~l~~~y~~lrk~ll~  154 (560)
T PF06160_consen   99 AKQAIKEIEEQLDEIEEDIKEILDELDELLES----EEKNREEIEELKEKYRELRKELLA  154 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555556666666666555555555443    334455555555555554444443

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.68  E-value=0.2  Score=58.06  Aligned_cols=31  Identities=13%  Similarity=0.244  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002544          349 IGSERSSLMLKYRSIEDNMKLLKKQLEDSER  379 (910)
Q Consensus       349 ~eke~~~L~~e~~~le~e~e~l~k~lee~e~  379 (910)
                      ..+.++.+..+|...+.+++.+++...++..
T Consensus       292 ~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~  322 (581)
T KOG0995|consen  292 MEKKLEMLKSEIEEKEEEIEKLQKENDELKK  322 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555555444433

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=97.65  E-value=0.41  Score=60.83  Aligned_cols=42  Identities=17%  Similarity=0.222  Sum_probs=26.5

Q ss_pred             CCCcchHHHHHHHHHHHHHhhhcc--CCCCh--HHHHHHHHhHhhh
Q 002544          294 SSDASIDNVVKVLDGLISEYETSC--HGPGK--WQKLATFLQQSSE  335 (910)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~Y~~~~--~gp~k--~~~l~~fl~~~~~  335 (910)
                      ...|.++.|...+..+..+|...-  .+|..  ...+..|+.....
T Consensus       628 ~~sgt~~~~~~~le~l~~eie~~rk~l~~lq~~s~~Y~k~Ie~~~~  673 (1294)
T KOG0962|consen  628 DESGTIDEYLDLLERLKGEIEKARKDLAMLQGRSALYRKFIEIACR  673 (1294)
T ss_pred             hhccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence            344667788888888888877542  33433  3556777776443

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=97.64  E-value=0.16  Score=56.08  Aligned_cols=26  Identities=4%  Similarity=0.152  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHH
Q 002544          451 MEDQVCSEIEVLKSRSTAAEARLAAA  476 (910)
Q Consensus       451 ~k~kl~~eleel~~~~ee~e~~~~~l  476 (910)
                      ...+++.-|.++..++++-......+
T Consensus       108 l~~kFq~~L~dIq~~~ee~~~~~~k~  133 (309)
T PF09728_consen  108 LSEKFQATLKDIQAQMEEQSERNIKL  133 (309)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHH
Confidence            34455555555555555544444433

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=97.64  E-value=0.19  Score=56.75  Aligned_cols=72  Identities=17%  Similarity=0.255  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          540 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDK  611 (910)
Q Consensus       540 ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~  611 (910)
                      ++...+.++...+.+|.........++..|.+++.++..+..++......+...+..+..++..+..|+.+.
T Consensus        39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~  110 (420)
T COG4942          39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE  110 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            344444455544445555555555555555555555555555555555555555555555555555555444

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=0.31  Score=58.55  Aligned_cols=68  Identities=24%  Similarity=0.216  Sum_probs=27.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 002544          681 IESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESER  749 (910)
Q Consensus       681 ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~  749 (910)
                      ...+......+..++......+........++...+..+....+.. ....+++...+..++.+++-+.
T Consensus       533 ~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~-~~~le~i~~~~~e~~~ele~~~  600 (698)
T KOG0978|consen  533 ERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKS-EAKLEQIQEQYAELELELEIEK  600 (698)
T ss_pred             HHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333444333333333333444444444444444444 3334444444444444444333

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=97.61  E-value=0.096  Score=52.43  Aligned_cols=142  Identities=20%  Similarity=0.245  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 002544          597 AQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIER  676 (910)
Q Consensus       597 ~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~  676 (910)
                      ...++.+...++.++.+.+..-.....++++....|.-++.++.++.++.+.....+..+..+.+-+...+..+.     
T Consensus        55 ~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~-----  129 (205)
T KOG1003|consen   55 AQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLS-----  129 (205)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH-----
Confidence            333444444444445555444444555566666666666665555544443333332222222222222211111     


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 002544          677 VQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLE  746 (910)
Q Consensus       677 ~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le  746 (910)
                        ..-+.+..........+.-+...+.++..+..-.+++++.++..++++ ..++...+.....+...|+
T Consensus       130 --~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~Ddl-E~kl~~~k~ky~~~~~eLD  196 (205)
T KOG1003|consen  130 --AKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDL-EEKLEEAKEKYEEAKKELD  196 (205)
T ss_pred             --HHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHH-HHhhHHHHHHHHHHHHHHH
Confidence              111122222222222333333333333333344455555555555555 4444444444444444444

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=97.60  E-value=0.38  Score=59.21  Aligned_cols=80  Identities=8%  Similarity=0.122  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 002544          392 INDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEA  471 (910)
Q Consensus       392 i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~  471 (910)
                      ...+..+++++...+..+..+...+..+...+..+++.+..++......+...-......+..+..++..+..++.+...
T Consensus       204 ~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~  283 (650)
T TIGR03185       204 PSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRA  283 (650)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444566666666666666666666666666666666666665555544432222222233444444444444443333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins

Probab=97.60  E-value=0.012  Score=72.52  Aligned_cols=233  Identities=16%  Similarity=0.205  Sum_probs=149.8

Q ss_pred             CCCceEEEeeccccccccccccCCchHHHHHhhcC----------CCCCChhhhhhhHHHHHHHhhCCCCceeeccCCCC
Q 002544           45 FSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRP----------VQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLS  114 (910)
Q Consensus        45 ~fP~f~WlvRDf~l~l~~~g~~it~~eyLe~~L~~----------~~g~~~~~~~~n~~R~~i~~~F~~~~cf~l~~P~~  114 (910)
                      +-+.++||||||+-        .||-+.|+..|..          .|...+     |   ..|..|| +..-++|||...
T Consensus       123 ~k~~llfviRD~~~--------~tp~e~l~~~l~~dl~~iW~~i~kP~~~~-----~---~~~~d~F-d~~f~~LpH~~~  185 (742)
T PF05879_consen  123 RKTLLLFVIRDHTG--------VTPLENLEETLREDLEKIWDSISKPEGFE-----N---SSLSDFF-DLEFTALPHKIL  185 (742)
T ss_pred             CCceEEEEEeeCCC--------CCcHHHHHHHHHHHHHHHHHhccCccccc-----C---CChhhee-eeeeeccCchhh
Confidence            44679999999972        3676777665531          111100     1   2366777 677778887764


Q ss_pred             ChhhhccccCCCcCCCcHHHHHHHHHHHHHHhcc-------CCCcccCCcccChHHHHHHHHHHHHHhcCCCCCCccchH
Q 002544          115 NENELQRLDQISLDRLRPEFRAGLDALTKFVFER-------TRPKQVGATVLTGPVLIGITESYLDAINNGAVPTISSSW  187 (910)
Q Consensus       115 ~~~~l~~l~~~~~~~L~~eF~~~~~~l~~~i~~~-------~~pK~i~G~~ltg~~l~~l~~~yv~ain~g~vP~i~sa~  187 (910)
                      ..               ..|.+++..|.......       .+|.  -.+.|.+-+|..|++..=+.|.++.=-.|++-=
T Consensus       186 ~~---------------e~F~~~v~~Lr~rf~~~~~~~~~~~~~~--y~~~iP~dG~~~y~~~iW~~I~~nkDLDLPtqq  248 (742)
T PF05879_consen  186 QP---------------EKFNEDVAKLRQRFVDSKNIEDGLFKPE--YHRRIPADGFSMYAENIWEQIKNNKDLDLPTQQ  248 (742)
T ss_pred             hH---------------HHHHHHHHHHHHHHhccCcCCCCCCchh--hcCCCChHHhHHHHHHHHHHHHhCccCCCCcHH
Confidence            42               47999999999877765       2222  234577778999999999999987544666777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccC-----------CCCChHHHHHHHHHHHHHHHHHhhcccC-CChhhhHHHHHHHH
Q 002544          188 QSVEEAECRRAYDSATETYMSTFDRS-----------KPPEEVALGEAHEAAVQKALAVYNAGAV-GVGLARKKYEGLLQ  255 (910)
Q Consensus       188 ~~~~~~e~~~a~~~A~~~Y~~~m~~~-----------~~~~e~~L~~~H~~~~~~Al~~F~~~~~-g~~~~~~~~~~~L~  255 (910)
                      ..+|.-.|..+..+++..+...+...           ..+.-..|-..-......|+.-|+..+- -...++...+..|.
T Consensus       249 ~mlA~fRCdEI~~e~l~~f~~~~~~~~~~~~~l~~~~~~~~~~~fg~~~~~l~~~~L~~YD~~AsrY~~~V~~~Kr~eL~  328 (742)
T PF05879_consen  249 EMLAQFRCDEIANEVLEEFDEDIKELIEKWSELEEAVQGGVVEDFGKKLKSLRDKALEEYDEEASRYHKSVYQEKRQELE  328 (742)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            89999999999999999998875431           1123357777778888899999987532 23456666667777


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHH-HHHHHHHHHHhhhc
Q 002544          256 KFFRKAFED-HKKNVYMEADIRCSSAIQSMERKLRAACHSSDASIDNV-VKVLDGLISEYETS  316 (910)
Q Consensus       256 ~~l~~~~~~-~~~~n~~~s~~~C~~~l~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Y~~~  316 (910)
                      ..|...+.. |...    -...|..++..+...|...... +.+|... ......++..|...
T Consensus       329 ~~i~~~l~~lf~~q----L~~L~~~~l~~Fk~~l~~~lk~-~~~Fa~~v~~~~~~~~~~F~~~  386 (742)
T PF05879_consen  329 SKIDSELQPLFQKQ----LKHLRKKLLESFKEALSSALKS-GEDFAEAVRECKQSALEEFEES  386 (742)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHHH
Confidence            666665543 2221    1244666777666666643221 2233322 33344455555543

It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=97.54  E-value=0.33  Score=56.81  Aligned_cols=24  Identities=21%  Similarity=0.230  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          552 EQCLTTLRLELKAAESKMRSYEVE  575 (910)
Q Consensus       552 e~ei~~l~~~lee~~~ki~~le~e  575 (910)
                      ..+|.+|++.+.+++.+++++-..
T Consensus       611 R~Ei~~LqrRlqaaE~R~eel~q~  634 (961)
T KOG4673|consen  611 RGEIEDLQRRLQAAERRCEELIQQ  634 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            455666666666666666665543

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=97.50  E-value=0.2  Score=53.53  Aligned_cols=76  Identities=16%  Similarity=0.227  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          539 EEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYL  614 (910)
Q Consensus       539 ~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el  614 (910)
                      .++..+..++..++.++-.....|.+..--++.+.+.+...+-++.++..-+......+..+-.+...++..+..+
T Consensus       151 QqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~Ql  226 (305)
T PF14915_consen  151 QQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQL  226 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444555555555555555555555555555555555555555554444444444444444433

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=97.48  E-value=6.3e-05  Score=92.85  Aligned_cols=9  Identities=11%  Similarity=-0.086  Sum_probs=5.5

Q ss_pred             cCCCChHHH
Q 002544          317 CHGPGKWQK  325 (910)
Q Consensus       317 ~~gp~k~~~  325 (910)
                      +.||.|..-
T Consensus       123 V~c~~ke~y  131 (713)
T PF05622_consen  123 VQCENKEEY  131 (713)
T ss_dssp             TSSSTHHHH
T ss_pred             hcCccHHHH
Confidence            367777643

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.46  E-value=0.58  Score=57.85  Aligned_cols=67  Identities=18%  Similarity=0.225  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          414 ISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKR  492 (910)
Q Consensus       414 ~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~  492 (910)
                      ..+..+.+.+...+..+......|-.+           ++....+....+....+++. +..+-....+++.+.--|+-
T Consensus       156 iElK~EYeelK~E~~kAE~~t~~~~~k-----------kk~I~aEkk~aK~~k~eaek-y~~lkde~~~~q~e~~L~qL  222 (1141)
T KOG0018|consen  156 IELKPEYEELKYEMAKAEETTTGNYKK-----------KKSIAAEKKEAKEGKEEAEK-YQRLKDEKGKAQKEQFLWEL  222 (1141)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhhHhhh-----------hhHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            356666777776666666666666555           33344444444444444433 34444445555555555553

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=97.45  E-value=0.51  Score=57.05  Aligned_cols=99  Identities=13%  Similarity=0.256  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002544          625 FEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELE  704 (910)
Q Consensus       625 ~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~  704 (910)
                      +++...+++..+..+..+.+....+...++.++.+...+.++..+....++.+++++..+..+...|+..+.....+.. 
T Consensus       447 ~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~-  525 (980)
T KOG0980|consen  447 YDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHN-  525 (980)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-
Confidence            3333333333333333333333334444444444444444455555555555555555555555555554444333222 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 002544          705 ALSKVALLEARVEEREKEIESL  726 (910)
Q Consensus       705 ~~~~~~elE~rl~e~eee~e~l  726 (910)
                        ..+.+++..+..++..+..+
T Consensus       526 --~~~~~l~~~l~~KD~~~~~~  545 (980)
T KOG0980|consen  526 --NQLAQLEDLLKQKDRLAAEL  545 (980)
T ss_pred             --HHHHHHHHHHHhhHHHHHHH
Confidence              22345555556666666655

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=97.44  E-value=0.25  Score=53.18  Aligned_cols=69  Identities=14%  Similarity=0.191  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          530 FSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQ  598 (910)
Q Consensus       530 ~~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~  598 (910)
                      +......+.+..+++..++..+...+.++.....++..++..+...+..+...+..+-..+........
T Consensus        32 l~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~  100 (294)
T COG1340          32 LRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN  100 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333344444444444444444444444555555555555555555555554444444444444443333

>PRK11281 hypothetical protein; Provisional

Probab=97.40  E-value=0.87  Score=58.51  Aligned_cols=34  Identities=12%  Similarity=0.133  Sum_probs=15.3

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002544          455 VCSEIEVLKSRSTAAEARLAAAREQALSAQEEVE  488 (910)
Q Consensus       455 l~~eleel~~~~ee~e~~~~~le~~~~~~q~Ele  488 (910)
                      +..++++.+..+.+.+..+..+.....+++..+.
T Consensus       133 ~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~ls  166 (1113)
T PRK11281        133 TLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALY  166 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence            3344444444444444444444444444444444

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.36  E-value=0.64  Score=56.08  Aligned_cols=58  Identities=12%  Similarity=0.239  Sum_probs=25.4

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          360 YRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLR  417 (910)
Q Consensus       360 ~~~le~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le  417 (910)
                      +..++.+.+.+..++..--....+....+..++..+....+.....+..|+..+..|.
T Consensus         6 l~qlq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk   63 (617)
T PF15070_consen    6 LKQLQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELK   63 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444433333333444444444444444444444444444444443

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.35  E-value=0.13  Score=54.20  Aligned_cols=7  Identities=0%  Similarity=-0.202  Sum_probs=3.3

Q ss_pred             CCCCCCc
Q 002544          834 TTSPLKY  840 (910)
Q Consensus       834 ~~~~~~~  840 (910)
                      ..++..|
T Consensus       218 ~d~iv~C  224 (239)
T COG1579         218 KDEIVFC  224 (239)
T ss_pred             CCCCccC
Confidence            3445555

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=97.32  E-value=0.35  Score=52.15  Aligned_cols=80  Identities=20%  Similarity=0.222  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          537 KEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQ  616 (910)
Q Consensus       537 le~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~  616 (910)
                      +-+++..++.+.+....+|..+..+..+.-..+..+-.....+..+...+...+......+..+...+..+..++.++..
T Consensus       163 l~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k  242 (294)
T COG1340         163 LKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEK  242 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444444444444444444444444444444444444444444444444433

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.20  E-value=0.67  Score=53.07  Aligned_cols=84  Identities=15%  Similarity=0.121  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          533 TLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKV  612 (910)
Q Consensus       533 ~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~  612 (910)
                      ++-+++.++..++..+.....+...+..........-..++..+..|+.+|.++..+-..+-+.-.+|+.+.-.|++.+.
T Consensus       108 kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs  187 (772)
T KOG0999|consen  108 KILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVS  187 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            34444445444444444444444444444444444445566677777777777777777777777777777777777776


Q ss_pred             HHHH
Q 002544          613 YLEQ  616 (910)
Q Consensus       613 el~~  616 (910)
                      .|+.
T Consensus       188 ~LR~  191 (772)
T KOG0999|consen  188 NLRQ  191 (772)
T ss_pred             HHhh
Confidence            6654

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.20  E-value=0.92  Score=54.54  Aligned_cols=92  Identities=20%  Similarity=0.194  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Q 002544          523 EDVLREEFSSTLAEKEEEMKEKATKIEHAE-------QCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKL--EAV  593 (910)
Q Consensus       523 ~~~~~~E~~~~~~ele~ei~~~~~kl~~~e-------~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~l--e~~  593 (910)
                      ...+..+|+.....+.+++..++.......       .++..+...+.++...+...+...+.|..+++.+....  ..-
T Consensus       410 l~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Y  489 (594)
T PF05667_consen  410 LVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAY  489 (594)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Confidence            333344444444444444444444333222       33344444444444444444444444444444433321  112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 002544          594 NAKAQSFEREARIMEQDKVYL  614 (910)
Q Consensus       594 ~~~~~~lEk~~~~Le~e~~el  614 (910)
                      ...|.++-+.++.-+.++..+
T Consensus       490 t~RIlEIv~NI~KQk~eI~KI  510 (594)
T PF05667_consen  490 TRRILEIVKNIRKQKEEIEKI  510 (594)
T ss_pred             HHHHHHHHHhHHHHHHHHHHH
Confidence            344444444444444444443

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=97.12  E-value=0.37  Score=48.55  Aligned_cols=64  Identities=19%  Similarity=0.232  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          557 TLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKS  620 (910)
Q Consensus       557 ~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e  620 (910)
                      .+......+-.....++++...|..+|..|.............+.++...|......|+.++..
T Consensus        78 ~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~  141 (193)
T PF14662_consen   78 SLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCE  141 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHH
Confidence            3334444444455555555555555565555555555555555555555555555555555433

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=97.10  E-value=0.61  Score=50.61  Aligned_cols=91  Identities=16%  Similarity=0.156  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          514 RTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAV  593 (910)
Q Consensus       514 ~~~~e~q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~  593 (910)
                      .+...++.-.......|.....+.+.-...+...+.....++.+++..+.++..++...+.-....+..+.++..+...+
T Consensus       153 ~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l  232 (264)
T PF06008_consen  153 DELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQEL  232 (264)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444455555555556666666666555555555555555555444444444


Q ss_pred             HHHHHHHHHHH
Q 002544          594 NAKAQSFEREA  604 (910)
Q Consensus       594 ~~~~~~lEk~~  604 (910)
                      .........-+
T Consensus       233 ~~~~~~~~~~L  243 (264)
T PF06008_consen  233 SEQQNEVSETL  243 (264)
T ss_pred             HHHHHHHHHHH
Confidence            44333333333

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=97.09  E-value=0.7  Score=51.17  Aligned_cols=81  Identities=9%  Similarity=0.134  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 002544          582 ETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKS  661 (910)
Q Consensus       582 el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~  661 (910)
                      .+..+...-..+...+.-+..+...++.-+..-.+-+.+....++.....+..++++...|+...+.....+-.+..+..
T Consensus       203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~  282 (309)
T PF09728_consen  203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQ  282 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            33333333333444444444444444444444444444444445555555555555555555555544444333333333


Q ss_pred             H
Q 002544          662 E  662 (910)
Q Consensus       662 e  662 (910)
                      .
T Consensus       283 ~  283 (309)
T PF09728_consen  283 K  283 (309)
T ss_pred             H
Confidence            3

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=97.08  E-value=1.2  Score=53.91  Aligned_cols=138  Identities=17%  Similarity=0.165  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          501 AKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQK  580 (910)
Q Consensus       501 ~k~~lek~~~~~e~~~~e~q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~  580 (910)
                      .++.++............+......+..++.......++.+.+.+ +++.....+...+.+++.+...+++.++.....+
T Consensus       345 ~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~e-qLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e  423 (980)
T KOG0980|consen  345 LKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQE-QLRNELAQLLASRTQLEKAQVLVEEAENKALAAE  423 (980)
T ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            444444444333334444444444444444444443333333222 2222222233333344444444455555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          581 LETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEA  639 (910)
Q Consensus       581 ~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~  639 (910)
                      .+.+.+...+......-..+-++.....+++...+....+......++.+.+..+..+.
T Consensus       424 ~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~  482 (980)
T KOG0980|consen  424 NRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAA  482 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            55554444444444444444444444444444444333333333333333343333333

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=97.06  E-value=0.49  Score=48.96  Aligned_cols=56  Identities=20%  Similarity=0.207  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          472 RLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLA  535 (910)
Q Consensus       472 ~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~lek~~~~~e~~~~e~q~~~~~~~~E~~~~~~  535 (910)
                      .+..+.+.......+..+|+.+|+...        +....+...++++.....++.++......
T Consensus        10 ~~~~~~~e~~~~E~e~~~l~~k~~e~~--------~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~   65 (207)
T PF05010_consen   10 AIKKVQEEVAEKEEEEQELKKKYEELH--------KENQEMRKIMEEYEKTIAQMIEEKQKQKE   65 (207)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHH--------HhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            344444444444566777887777632        12223333444454445554444443333

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=97.00  E-value=0.8  Score=50.37  Aligned_cols=62  Identities=15%  Similarity=0.196  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          553 QCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYL  614 (910)
Q Consensus       553 ~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el  614 (910)
                      .++............+|......+..+..+|..-.+.+.+-...+..+|....-++++...+
T Consensus       217 ~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~l  278 (499)
T COG4372         217 EELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQL  278 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444455555555555555554444444444444444444444444444443

>PRK09039 hypothetical protein; Validated

Probab=96.90  E-value=0.26  Score=55.38  Aligned_cols=27  Identities=26%  Similarity=0.410  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002544          674 IERVQRQIESLERQKTDLTNEVNRIRE  700 (910)
Q Consensus       674 ie~~~~~ie~Le~e~~~Le~Ele~~~~  700 (910)
                      +..++.+|+.|..++..|+..|+....
T Consensus       139 V~~L~~qI~aLr~Qla~le~~L~~ae~  165 (343)
T PRK09039        139 VELLNQQIAALRRQLAALEAALDASEK  165 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333334444444444444433

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=96.86  E-value=1.4  Score=50.90  Aligned_cols=225  Identities=18%  Similarity=0.213  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Q 002544          569 MRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERC----------KVAEKE  638 (910)
Q Consensus       569 i~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l----------~~~e~e  638 (910)
                      |+..+..+..++..|+++-..++..-...+..+.....|-.-+.++++.-..+...++.+....          ...+++
T Consensus       276 ld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~e  355 (570)
T COG4477         276 LDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKE  355 (570)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHH
Confidence            3455566666777777777766666666666665555555555555544333333333333322          222223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          639 AKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEE  718 (910)
Q Consensus       639 ~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE~rl~e  718 (910)
                      +.++...++.....+.....       ..+.+...++....++...+..-..+...+..+++....+...+.-+.+++.+
T Consensus       356 L~el~~~~~~i~~~~~~~~~-------~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~e  428 (570)
T COG4477         356 LKELESVLDEILENIEAQEV-------AYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHE  428 (570)
T ss_pred             HHHHHHHHHHHHHHhhcccc-------cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333222222222222       23444455555555555555555556666666666555554444444444433


Q ss_pred             HHHHHHHHHHhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhhcch
Q 002544          719 REKEIESLLESNNE-----QRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSK  793 (910)
Q Consensus       719 ~eee~e~l~~r~~~-----qr~~~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~~e~~~~~~~~~~~~~~  793 (910)
                      ...-++.    .+.     ..-.-....+..++....++++.-=-.+..+.-++.+..+|..+......+=.|.+ |--+
T Consensus       429 ikR~mek----~nLPGlPe~~l~l~~~~~~~i~~l~~eLse~pinm~~v~~~v~~a~~~m~~l~~~t~e~ve~a~-LaE~  503 (570)
T COG4477         429 IKRYMEK----SNLPGLPETFLSLFFTAGHEIQDLMKELSEVPINMEAVSALVDIATEDMNTLEDETEEVVENAV-LAEQ  503 (570)
T ss_pred             HHHHHHH----cCCCCCcHHHHHHHHhhhhHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            3322221    000     00011223333333333333333333444444455666666666666665555555 4444


Q ss_pred             hhhhhccccccccc
Q 002544          794 LRAVSHGKRARADD  807 (910)
Q Consensus       794 ~~~~~~~~~~~~~~  807 (910)
                      |  +++|-|.|..+
T Consensus       504 l--IQY~NRYRs~~  515 (570)
T COG4477         504 L--IQYGNRYRSRN  515 (570)
T ss_pred             H--HHHHHHHHhhh
Confidence            4  34566666544

>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=96.79  E-value=0.54  Score=51.95  Aligned_cols=38  Identities=26%  Similarity=0.414  Sum_probs=25.6

Q ss_pred             HHHHHHHhhcccCCCCC-hHH----HHHHHHHHHHHHHHHhhc
Q 002544          201 SATETYMSTFDRSKPPE-EVA----LGEAHEAAVQKALAVYNA  238 (910)
Q Consensus       201 ~A~~~Y~~~m~~~~~~~-e~~----L~~~H~~~~~~Al~~F~~  238 (910)
                      .=+..|-..++....|. +..    ...-+..|+.+|+.+|..
T Consensus        12 ~L~~~Yv~aIn~G~vP~iesa~~~~~e~e~~~A~~~A~~~Y~~   54 (297)
T PF02841_consen   12 ELVKSYVDAINSGSVPCIESAWQAVAEAENRAAVEKAVEHYEE   54 (297)
T ss_dssp             HHHHHHHHHHHTTS--BHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777777664443 343    355589999999999987

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.78  E-value=2.2  Score=52.09  Aligned_cols=208  Identities=15%  Similarity=0.163  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH--HHH---------h
Q 002544          594 NAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAE---AAA--ARK---------G  659 (910)
Q Consensus       594 ~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e---~~~--~~~---------e  659 (910)
                      ..++..|+.++..++.++..|...+.+....++.....+......+..+...+..+..-   .+.  ...         +
T Consensus       264 ~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d  343 (717)
T PF09730_consen  264 LSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHED  343 (717)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccc
Confidence            35566667777777777777666654444445555555554444444444433333220   000  000         0


Q ss_pred             hHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 002544          660 KSEFENL---AMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRAS  736 (910)
Q Consensus       660 ~~e~~r~---~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~  736 (910)
                      ..-++..   +.-++..+..+..++..+..++..|...+........+.   ...+..++..+.+.+..+ .+...+.+.
T Consensus       344 ~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~e---k~~~~~e~q~L~ekl~~l-ek~~re~qe  419 (717)
T PF09730_consen  344 GDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQE---KDRLESEVQNLKEKLMSL-EKSSREDQE  419 (717)
T ss_pred             cchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHhhhhhHH
Confidence            0000110   011223333333334444444444433333333321111   234566667777777777 565666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhhcchhhhhhcccccccc
Q 002544          737 TVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAVSHGKRARAD  806 (910)
Q Consensus       737 ~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  806 (910)
                      .+..|+..|-....--.+....+...+.+|...-..|-.+-..+-. -.++|.=-.=|-.+..|+..+.+
T Consensus       420 ri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~-cNgeTPnRVmLD~yr~~r~~~~~  488 (717)
T PF09730_consen  420 RISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCM-CNGETPNRVMLDYYRQGRQTRRE  488 (717)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCCCccHHHHHHHhhhhhhcc
Confidence            7888888777776665555555555555555444444444332221 23566211113334445544443

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=96.77  E-value=0.73  Score=46.46  Aligned_cols=89  Identities=17%  Similarity=0.202  Sum_probs=47.7

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 002544          657 RKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRAS  736 (910)
Q Consensus       657 ~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~  736 (910)
                      ++....+..+....+.+.-.+...+..|+.++..+..+.+.+.....++......|-..+..++.-+-.. ......+..
T Consensus        80 EE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~-da~l~e~t~  158 (193)
T PF14662_consen   80 EEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQR-DAILSERTQ  158 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence            3333334434444444455555566666666777777777766666655555555655555554444444 333444444


Q ss_pred             HHHHHHHHHH
Q 002544          737 TVKKLEDLLE  746 (910)
Q Consensus       737 ~i~~Le~~le  746 (910)
                      .|++|...++
T Consensus       159 ~i~eL~~~ie  168 (193)
T PF14662_consen  159 QIEELKKTIE  168 (193)
T ss_pred             hHHHHHHHHH
Confidence            5555555444

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=96.75  E-value=0.25  Score=47.59  Aligned_cols=120  Identities=19%  Similarity=0.241  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          351 SERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSL  430 (910)
Q Consensus       351 ke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~  430 (910)
                      .++..+...+......+..+...+........+...+|+.++.           ........+..+..+...+..++..+
T Consensus        10 ~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~-----------~Ha~~~~~L~~lr~e~~~~~~~~~~l   78 (132)
T PF07926_consen   10 SELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELV-----------KHAEDIKELQQLREELQELQQEINEL   78 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444433333333333344544443           22233333444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 002544          431 KNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQAL  481 (910)
Q Consensus       431 k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~  481 (910)
                      +..+...+..++..-...+..+..|..++.+++.+++++.....-|..++.
T Consensus        79 ~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE  129 (132)
T PF07926_consen   79 KAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE  129 (132)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444444444444333334455777888888888888888887777766554

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PRK09039 hypothetical protein; Validated

Probab=96.74  E-value=0.43  Score=53.72  Aligned_cols=6  Identities=17%  Similarity=0.357  Sum_probs=2.2

Q ss_pred             HHHHHH
Q 002544          672 AVIERV  677 (910)
Q Consensus       672 ~~ie~~  677 (910)
                      ..|+.+
T Consensus       158 ~~L~~a  163 (343)
T PRK09039        158 AALDAS  163 (343)
T ss_pred             HHHHHH
Confidence            333333

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.68  E-value=0.95  Score=46.54  Aligned_cols=26  Identities=19%  Similarity=0.341  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          662 EFENLAMERMAVIERVQRQIESLERQ  687 (910)
Q Consensus       662 e~~r~~~e~~~~ie~~~~~ie~Le~e  687 (910)
                      ++...+......++.....+..|++.
T Consensus       122 eL~~kL~~~~~~l~~~~~ki~~Lek~  147 (194)
T PF15619_consen  122 ELQRKLSQLEQKLQEKEKKIQELEKQ  147 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444445555554444444443

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=96.54  E-value=0.75  Score=44.48  Aligned_cols=76  Identities=18%  Similarity=0.320  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          545 ATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKS  620 (910)
Q Consensus       545 ~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e  620 (910)
                      +.+...+...|..+.+.++..+.....+.......+.++..|..++..+......++..+..+..+...+...+..
T Consensus        16 ~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~   91 (140)
T PF10473_consen   16 ESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQK   91 (140)
T ss_pred             HHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333444444444444444444444444444444444444444444444444444444444444443333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.51  E-value=3.7  Score=51.20  Aligned_cols=93  Identities=14%  Similarity=0.118  Sum_probs=49.6

Q ss_pred             HHHHHHHhccCCCcccCCcccChHHHHHHHHH---HHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcccC--
Q 002544          139 DALTKFVFERTRPKQVGATVLTGPVLIGITES---YLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRS--  213 (910)
Q Consensus       139 ~~l~~~i~~~~~pK~i~G~~ltg~~l~~l~~~---yv~ain~g~vP~i~sa~~~~~~~e~~~a~~~A~~~Y~~~m~~~--  213 (910)
                      ..|.+.|-+-...=.|+|.+||-..++.-+..   .|.|-|   +-..+-++..++...-    .+=-.+| ..|+..  
T Consensus        86 ~~F~R~I~~G~seY~IDne~VT~eeY~~eLekinIlVkARN---FLVFQGdVE~IA~k~P----kElt~LF-EEISgSiE  157 (1141)
T KOG0018|consen   86 RRFTRAINGGTSEYMIDNEIVTREEYLEELEKINILVKARN---FLVFQGDVEKIAGKNP----KELTALF-EEISGSIE  157 (1141)
T ss_pred             hhhhhhhcCCceeEEEcceeccHHHHHHHHhhcceeeeeee---EEEecChHHHHhccCH----HHHHHHH-HHHhhhhh
Confidence            34555555333444568888887777666554   233333   3333333333332211    0111122 233332  


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhhcc
Q 002544          214 KPPEEVALGEAHEAAVQKALAVYNAG  239 (910)
Q Consensus       214 ~~~~e~~L~~~H~~~~~~Al~~F~~~  239 (910)
                      ..|..+.+...-..|...+...|.++
T Consensus       158 lK~EYeelK~E~~kAE~~t~~~~~kk  183 (1141)
T KOG0018|consen  158 LKPEYEELKYEMAKAEETTTGNYKKK  183 (1141)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhHhhhh
Confidence            23666788888888888888888764

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=96.50  E-value=2.4  Score=49.02  Aligned_cols=92  Identities=13%  Similarity=0.157  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          566 ESKMRSYEVEISSQKLETKELSEKLE---AVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKA  642 (910)
Q Consensus       566 ~~ki~~le~e~~~L~~el~dL~~~le---~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~  642 (910)
                      ...+.........|..+++.+...+-   .....+..+++.+..+...+..+...+......+-.++..++.++..+...
T Consensus       315 ~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i  394 (570)
T COG4477         315 PDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDI  394 (570)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHH
Confidence            33344444445555555555544432   222334445555555555555554444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHH
Q 002544          643 TELADRERAEAAAAR  657 (910)
Q Consensus       643 ~~~~e~l~~e~~~~~  657 (910)
                      ....+..+..+..++
T Consensus       395 ~~~q~~~~e~L~~Lr  409 (570)
T COG4477         395 EDEQEKVQEHLTSLR  409 (570)
T ss_pred             hhhHHHHHHHHHHHH
Confidence            444444443333333

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.46  E-value=2.5  Score=48.73  Aligned_cols=137  Identities=20%  Similarity=0.193  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          364 EDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQ  443 (910)
Q Consensus       364 e~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee  443 (910)
                      +..++.|..+.+--++.+.+-+.+++.+..+|+..++.+++....-+.....+.....+|.                   
T Consensus       312 er~IerLkeqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLa-------------------  372 (654)
T KOG4809|consen  312 ERIIERLKEQRERDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLA-------------------  372 (654)
T ss_pred             HHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence            3566667666666665544445555555555555555555444443333333333322222                   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          444 VLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQRE  523 (910)
Q Consensus       444 ~~~e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~lek~~~~~e~~~~e~q~~~  523 (910)
                            .+--++.++|..+.--++...+.|..++.++..+..-++|.+..-+.+  .....+++..+.....+...++.+
T Consensus       373 ------s~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~~pe~~--d~i~~le~e~~~y~de~~kaqaev  444 (654)
T KOG4809|consen  373 ------SAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARMNPEFA--DQIKQLEKEASYYRDECGKAQAEV  444 (654)
T ss_pred             ------HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcChhhH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  223334566666666777777788888888888877777666554443  566677777777777777777777


Q ss_pred             HHHH
Q 002544          524 DVLR  527 (910)
Q Consensus       524 ~~~~  527 (910)
                      +.+.
T Consensus       445 drlL  448 (654)
T KOG4809|consen  445 DRLL  448 (654)
T ss_pred             HHHH
Confidence            7644

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.44  E-value=1.4  Score=45.41  Aligned_cols=70  Identities=29%  Similarity=0.392  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          704 EALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQ  777 (910)
Q Consensus       704 ~~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~  777 (910)
                      .+..++..++.++++.+..+..+  .+....  .-.+....+..+.....++...+..+..++..+.+.|.+-.
T Consensus       122 eL~~kL~~~~~~l~~~~~ki~~L--ek~leL--~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKe  191 (194)
T PF15619_consen  122 ELQRKLSQLEQKLQEKEKKIQEL--EKQLEL--ENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKE  191 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34445566666666666667666  333333  34556666666666666666677767766777766666544

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=96.42  E-value=2.4  Score=48.05  Aligned_cols=105  Identities=15%  Similarity=0.098  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          575 EISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAA  654 (910)
Q Consensus       575 e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~  654 (910)
                      -+..|+..+++|.......--+...+++.++.|..-+...+..+.+.....+.++.+++.+......+.+++..--.+-.
T Consensus       363 iinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKn  442 (527)
T PF15066_consen  363 IINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKN  442 (527)
T ss_pred             HHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence            44455555555555555555555556666666666666655555555555555555555555555444444432111111


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHH
Q 002544          655 AARKGKSEFENLAMERMAVIERVQR  679 (910)
Q Consensus       655 ~~~~e~~e~~r~~~e~~~~ie~~~~  679 (910)
                      .......++.+.+.+.+.++++++.
T Consensus       443 ksvsqclEmdk~LskKeeeverLQ~  467 (527)
T PF15066_consen  443 KSVSQCLEMDKTLSKKEEEVERLQQ  467 (527)
T ss_pred             hHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            1222333344444445454444433

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=96.37  E-value=2.6  Score=47.93  Aligned_cols=37  Identities=19%  Similarity=0.326  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 002544          709 VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLE  746 (910)
Q Consensus       709 ~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le  746 (910)
                      ...++..+......++.+ ......++..|.+++....
T Consensus       212 ~~~l~~~l~~~q~~l~eL-~~~~~~L~~~Ias~e~~aA  248 (420)
T COG4942         212 LAQLNSELSADQKKLEEL-RANESRLKNEIASAEAAAA  248 (420)
T ss_pred             HHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHH
Confidence            345666666666666666 3333333444444444443

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=96.18  E-value=5.2  Score=49.51  Aligned_cols=115  Identities=16%  Similarity=0.224  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          529 EFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIME  608 (910)
Q Consensus       529 E~~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le  608 (910)
                      ||++...+++..+.++..++.....+...+...+.+...-|..+...+.....++.+|..+++...+....|.=++..+.
T Consensus        82 e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~  161 (769)
T PF05911_consen   82 EWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLS  161 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555666666666666666777788888888888888888888888888888888877777777766666666


Q ss_pred             HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          609 QDKVYLEQK-------YKSEFERFEEVQERCKVAEKEAKKAT  643 (910)
Q Consensus       609 ~e~~el~~~-------l~e~~~~~eE~e~~l~~~e~e~~~~~  643 (910)
                      .++.--...       .+...+..-+.-..+..++.++++++
T Consensus       162 keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr  203 (769)
T PF05911_consen  162 KELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLR  203 (769)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665422111       12222233334445555555555554

The function of this family is unknown.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=96.18  E-value=0.98  Score=43.52  Aligned_cols=45  Identities=29%  Similarity=0.358  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          454 QVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAV  498 (910)
Q Consensus       454 kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~  498 (910)
                      .+..++..+.....+.......+...+.....-+.+...+|+..+
T Consensus         7 ~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El   51 (132)
T PF07926_consen    7 SLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYEREL   51 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555555555555555555555565543

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=96.18  E-value=1.6  Score=47.95  Aligned_cols=102  Identities=16%  Similarity=0.220  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          387 RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLK-NE--ISDWKRKYDQVLTKQKAMEDQVCSEIEVLK  463 (910)
Q Consensus       387 ~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k-~e--~~~~kkk~Ee~~~e~~~~k~kl~~eleel~  463 (910)
                      -+-.++..-+.+.|++......++.....+.....++.-+...-. ..  -......+...+.+..+..+.|..++..|+
T Consensus        13 IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lr   92 (319)
T PF09789_consen   13 ILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELR   92 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444445555555555555555555544444331111000 00  000112222233334455777889999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHH
Q 002544          464 SRSTAAEARLAAAREQALSAQEEVE  488 (910)
Q Consensus       464 ~~~ee~e~~~~~le~~~~~~q~Ele  488 (910)
                      .++.++.+-+.-+..++...+....
T Consensus        93 qkl~E~qGD~KlLR~~la~~r~~~~  117 (319)
T PF09789_consen   93 QKLNEAQGDIKLLREKLARQRVGDE  117 (319)
T ss_pred             HHHHHHhchHHHHHHHHHhhhhhhc
Confidence            9999999988888887776555444

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=96.10  E-value=4.6  Score=48.26  Aligned_cols=29  Identities=17%  Similarity=0.276  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          736 STVKKLEDLLESERRSRAAANAMAERLSL  764 (910)
Q Consensus       736 ~~i~~Le~~le~e~~~~~ea~~r~e~l~~  764 (910)
                      ..+..++..|..++++.+-|+--+....-
T Consensus       589 E~L~~~E~rLNeARREHtKaVVsLRQ~qr  617 (739)
T PF07111_consen  589 EQLSEMEKRLNEARREHTKAVVSLRQIQR  617 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555544444333

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.09  E-value=3  Score=46.03  Aligned_cols=12  Identities=42%  Similarity=0.528  Sum_probs=5.7

Q ss_pred             chhhhh-hccCCC
Q 002544          883 FGAELL-QLRNPN  894 (910)
Q Consensus       883 ~~~~~~-~~~~~~  894 (910)
                      ||..|= ++-+|+
T Consensus       455 f~~~lR~qad~P~  467 (499)
T COG4372         455 FGWCLRSQADTPS  467 (499)
T ss_pred             HHHHHHHhcCCcc
Confidence            444444 444553

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.97  E-value=5.2  Score=47.76  Aligned_cols=49  Identities=12%  Similarity=0.179  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          398 LADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLT  446 (910)
Q Consensus       398 ~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~  446 (910)
                      +-+.++.++-.....+.........+.+.++..-+++...+.+++..+.
T Consensus       120 ~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s  168 (716)
T KOG4593|consen  120 QEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLS  168 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444555555555555555555555555443

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=95.89  E-value=5.7  Score=47.54  Aligned_cols=124  Identities=20%  Similarity=0.223  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          431 KNEISDWKRKYDQVLT----KQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALE  506 (910)
Q Consensus       431 k~e~~~~kkk~Ee~~~----e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~le  506 (910)
                      +.++++..+...+.++    ...++-..|......|...+.+.+.+....-+.+..++.+.+.++..+..    ...+++
T Consensus       139 q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk----~~~~le  214 (739)
T PF07111_consen  139 QRELEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSK----TQEELE  214 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHH
Confidence            3455555555554442    23334445666666777777777776666667777777777777766554    334444


Q ss_pred             HHHHHHH---HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          507 KAAIVQE---RTSKE-------MQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLR  559 (910)
Q Consensus       507 k~~~~~e---~~~~e-------~q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~~e~ei~~l~  559 (910)
                      -....+.   +.+.+       .+.|. .-+.++...+..++++...+..-++=+..++..+.
T Consensus       215 ~q~tlv~~LR~YvGeq~p~~~~~~~we-~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt  276 (739)
T PF07111_consen  215 AQVTLVEQLRKYVGEQVPPEVHSQAWE-PEREELLETVQHLQEDRDALQATAELLQVRVQSLT  276 (739)
T ss_pred             HHHHHHHHHHHHHhhhCCcccccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4433332   11111       01111 11234445555566665555555444444444433

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PF13514 AAA_27: AAA domain

Probab=95.89  E-value=9.6  Score=50.10  Aligned_cols=15  Identities=33%  Similarity=0.589  Sum_probs=9.6

Q ss_pred             ccccCCchHHHHHhhc
Q 002544           63 DNRKITPRDYLEIALR   78 (910)
Q Consensus        63 ~g~~it~~eyLe~~L~   78 (910)
                      +|.+ .|.++|...|.
T Consensus        68 ~g~~-~~e~~L~~~Lg   82 (1111)
T PF13514_consen   68 DGQP-LPEDWLAALLG   82 (1111)
T ss_pred             CCCC-CCHHHHHHHHc
Confidence            4664 56777777764

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=95.71  E-value=2.1  Score=49.90  Aligned_cols=205  Identities=16%  Similarity=0.146  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          562 LKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKK  641 (910)
Q Consensus       562 lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~  641 (910)
                      ..++++++..|+..+..|..+..-|.++.+..+..|..||--+..-...+...++.+...-       -....++.....
T Consensus       106 ~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqel-------lsrtsLETqKlD  178 (861)
T KOG1899|consen  106 YPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQEL-------LSRTSLETQKLD  178 (861)
T ss_pred             chHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHH-------HhhhhHHHHHhH
Confidence            4455566666666666666666666666666666666655555554444444444322211       112334444444


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          642 ATELADRERAEAAAARKGKSEFENLAMERMAVIERVQR-QIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEERE  720 (910)
Q Consensus       642 ~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~-~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE~rl~e~e  720 (910)
                      +-.++.++...+.+++++..+.+.++-..+..+.+++. .+..+..+....+.       .+......++-|-..+.+++
T Consensus       179 LmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~-------klkstk~e~a~L~Eq~~eK~  251 (861)
T KOG1899|consen  179 LMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYET-------KLKSTKGEMAPLREQRSEKN  251 (861)
T ss_pred             HHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh-------hcccccchhhhHHHHHhhhh
Confidence            44444444444444444444444332222222222210 00011111000000       01111111234444445555


Q ss_pred             HHHHHHHHhhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Q 002544          721 KEIESLLESNNEQR--------ASTVKKLEDLLESERRSRAAANAMAERLSLE---VQSAQAKLDEMQQELT  781 (910)
Q Consensus       721 ee~e~l~~r~~~qr--------~~~i~~Le~~le~e~~~~~ea~~r~e~l~~q---l~~~k~~i~~l~~e~~  781 (910)
                      .++..+ -+..-++        ...+..|..-+++...+..+..++++.+..-   +++.+.-+.-+++.+.
T Consensus       252 ~e~~rl-~~~lv~~~~~d~e~~~~rd~~lk~a~eslm~ane~kdr~ie~lr~~ln~y~k~~~iv~i~qg~~~  322 (861)
T KOG1899|consen  252 DEEMRL-LRTLVQRLMADGEHKSLRDNTLKNALESLMRANEQKDRFIESLRNYLNNYDKNAQIVRILQGEPS  322 (861)
T ss_pred             hHHHHH-HHHHHHHHhhcccchhhHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhhhhhhhhhhhhhcCCCc
Confidence            555544 2222221        2234455555566666666666666665544   4455555555566666

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=95.52  E-value=12  Score=48.46  Aligned_cols=9  Identities=0%  Similarity=0.102  Sum_probs=3.8

Q ss_pred             HHHHHHHHh
Q 002544          354 SSLMLKYRS  362 (910)
Q Consensus       354 ~~L~~e~~~  362 (910)
                      +.++.+++.
T Consensus        26 ~~iq~~l~~   34 (1109)
T PRK10929         26 KQITQELEQ   34 (1109)
T ss_pred             HHHHHHHHH
Confidence            344444443

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=95.51  E-value=2.2  Score=49.74  Aligned_cols=21  Identities=10%  Similarity=0.270  Sum_probs=16.2

Q ss_pred             hhHhhHHHHHHHHHhcCchhh
Q 002544          866 YTKFTVQKLKQELTKHNFGAE  886 (910)
Q Consensus       866 ~~~~~~~~~~~~~~~~~~~~~  886 (910)
                      +.+++-..+=..|.+.|+|--
T Consensus       547 fa~W~~EqvcnWlae~Gl~qY  567 (861)
T KOG1899|consen  547 FADWRSEQVCNWLAEIGLGQY  567 (861)
T ss_pred             hhhccHHHHHHHHHHhchHHH
Confidence            777777777888888888754

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=95.47  E-value=12  Score=48.33  Aligned_cols=91  Identities=9%  Similarity=0.088  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          350 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEY-----LKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLS  424 (910)
Q Consensus       350 eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~-----~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~  424 (910)
                      ....+.++..+....++...++++++........+     ...++..+......+.+.++..+..+.+.+.+....+.+-
T Consensus        64 ~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~p  143 (1109)
T PRK10929         64 LERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLP  143 (1109)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhch
Confidence            44556677777777777777777766532211111     2345555555555555555555555555544444443333


Q ss_pred             HHHHHHHHHHHHHHHH
Q 002544          425 KTVDSLKNEISDWKRK  440 (910)
Q Consensus       425 ~qle~~k~e~~~~kkk  440 (910)
                      .....++.++.+.++.
T Consensus       144 q~~~~~~~~l~~i~~~  159 (1109)
T PRK10929        144 QQQTEARRQLNEIERR  159 (1109)
T ss_pred             hhHHHHHHHHHHHHHH
Confidence            2224444444444443

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=95.46  E-value=3  Score=44.11  Aligned_cols=119  Identities=13%  Similarity=0.178  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          488 EEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAES  567 (910)
Q Consensus       488 ee~~~k~e~~~~~~k~~lek~~~~~e~~~~e~q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~  567 (910)
                      ++|+.=+..-+-..-..|+.....+.+.....|...+.           +++-+...+.+.+....++..|++++..+.+
T Consensus         6 eEWKeGL~~~aLqKIqelE~QldkLkKE~qQrQfQleS-----------lEAaLqKQKqK~e~ek~e~s~LkREnq~l~e   74 (307)
T PF10481_consen    6 EEWKEGLPTRALQKIQELEQQLDKLKKERQQRQFQLES-----------LEAALQKQKQKVEEEKNEYSALKRENQSLME   74 (307)
T ss_pred             hHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHHHHHHHhhhhhhhhhhhhhHHH
Confidence            45555444432223344444444444444444444444           4444445555555566667788888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          568 KMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK  617 (910)
Q Consensus       568 ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~  617 (910)
                      .|+.+++.+..+..++.--+.++.-....+....+.+..|+.++..++..
T Consensus        75 ~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsE  124 (307)
T PF10481_consen   75 SCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSE  124 (307)
T ss_pred             HHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888887776666555555555555555555555555555444443

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=95.40  E-value=7.1  Score=46.46  Aligned_cols=12  Identities=25%  Similarity=0.362  Sum_probs=6.6

Q ss_pred             hcchhhhhhccc
Q 002544          790 LGSKLRAVSHGK  801 (910)
Q Consensus       790 ~~~~~~~~~~~~  801 (910)
                      +|+++++.....
T Consensus       438 ld~~i~~~~~ie  449 (498)
T TIGR03007       438 LRPTVRSVRDLR  449 (498)
T ss_pred             hcCcCCCHHHHH
Confidence            566666654333

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG2203 consensus GTP-binding protein [General function prediction only]

Probab=95.32  E-value=7.6  Score=45.25  Aligned_cols=129  Identities=17%  Similarity=0.252  Sum_probs=82.4

Q ss_pred             ceEEEeeccccccccccccCCchHHHHHhhcC----------CCCCChhhhhhhHHHHHHHhhCCCCceeeccCCCCChh
Q 002544           48 IFVWLLRDFYLDLVEDNRKITPRDYLEIALRP----------VQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNEN  117 (910)
Q Consensus        48 ~f~WlvRDf~l~l~~~g~~it~~eyLe~~L~~----------~~g~~~~~~~~n~~R~~i~~~F~~~~cf~l~~P~~~~~  117 (910)
                      -++||+||++-        .||-+-|+.+|..          .|...+     |   ..|-.||. .....|+|-..   
T Consensus       163 ~LlFVIRD~~~--------~TplenLe~~l~~dlqkIW~sl~KPe~~e-----~---s~l~DfFd-v~~v~Ls~~~~---  222 (772)
T KOG2203|consen  163 LLLFVIRDKTG--------VTPLENLEDVLREDLQKIWDSLSKPEGHE-----N---SPLNDFFD-VEFVGLSHKEL---  222 (772)
T ss_pred             EEEEEEecccC--------CCchHHhhHHHHHHHHHHHHhcCCccccc-----C---Cchhhhhc-eeeeecchHHH---
Confidence            48999999973        5787888777642          111111     1   12334442 33333333221   


Q ss_pred             hhccccCCCcCCCcHHHHHHHHHHHHHHhcc-CCCcccCC---cccChHHHHHHHHHHHHHhcCCCCCCccchHHHHHHH
Q 002544          118 ELQRLDQISLDRLRPEFRAGLDALTKFVFER-TRPKQVGA---TVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEA  193 (910)
Q Consensus       118 ~l~~l~~~~~~~L~~eF~~~~~~l~~~i~~~-~~pK~i~G---~~ltg~~l~~l~~~yv~ain~g~vP~i~sa~~~~~~~  193 (910)
                                  =...|.++|..|+...+.+ ..|=.++|   ..|-...|.-+.+..=+.|..+.=-.++.-=..+|..
T Consensus       223 ------------kedqF~e~V~~LrqrFv~s~~s~~~f~~d~~~~iPadGfs~~a~qiWd~Ie~NKDLDLPtqqvlvAt~  290 (772)
T KOG2203|consen  223 ------------KEDQFKEQVASLRQRFVHSGISPYGFAGDYHGVIPADGFSFYAEQIWDVIEENKDLDLPTQQVLVATV  290 (772)
T ss_pred             ------------HHHHHHHHHHHHHHHHHhcCCCCCccccccCCcccccchhhhHHHHHHHHHhCcCCCCchhhhHHhhh
Confidence                        1357999999999766654 77766655   3566677888899999999886533333334567788


Q ss_pred             HHHHHHHHHHHHHHh
Q 002544          194 ECRRAYDSATETYMS  208 (910)
Q Consensus       194 e~~~a~~~A~~~Y~~  208 (910)
                      .|.....+++..|-.
T Consensus       291 rceEIanE~~e~fit  305 (772)
T KOG2203|consen  291 RCEEIANEKLEEFIT  305 (772)
T ss_pred             hHHHHHHHHHHHhhh
Confidence            898888888887754

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=95.31  E-value=5  Score=46.33  Aligned_cols=17  Identities=18%  Similarity=0.261  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 002544          710 ALLEARVEEREKEIESL  726 (910)
Q Consensus       710 ~elE~rl~e~eee~e~l  726 (910)
                      ..+...+......++.+
T Consensus       249 ~~~~~~l~~~~~~l~~~  265 (423)
T TIGR01843       249 TEAQARLAELRERLNKA  265 (423)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34445555555555554

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=95.31  E-value=13  Score=47.85  Aligned_cols=34  Identities=3%  Similarity=-0.130  Sum_probs=24.8

Q ss_pred             ccChHHHHHHHHHHHHHhcCCCCCCccchHHHHH
Q 002544          158 VLTGPVLIGITESYLDAINNGAVPTISSSWQSVE  191 (910)
Q Consensus       158 ~ltg~~l~~l~~~yv~ain~g~vP~i~sa~~~~~  191 (910)
                      ..+|...-.+++....-++-+++|.+++.-...-
T Consensus       359 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  392 (1294)
T KOG0962|consen  359 QELKRQRDSLIQELAHQYQLDSVESLEFMAEVKK  392 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccchHHHHHH
Confidence            4566677777777888888889998886655443

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=95.26  E-value=5.8  Score=43.38  Aligned_cols=99  Identities=24%  Similarity=0.295  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002544          625 FEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELE  704 (910)
Q Consensus       625 ~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~  704 (910)
                      ++.++.++..++.+-..++.....+..+.......   -+..+.+.-.++..+..++..|..++.+-..+..+...+...
T Consensus       162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~Eek---EqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~  238 (306)
T PF04849_consen  162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEK---EQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITS  238 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHH---HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444333332221111   111234566666667777777777766666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 002544          705 ALSKVALLEARVEEREKEIESL  726 (910)
Q Consensus       705 ~~~~~~elE~rl~e~eee~e~l  726 (910)
                      +.+.+..++.+++..-.+-+.+
T Consensus       239 LlsqivdlQ~r~k~~~~EnEeL  260 (306)
T PF04849_consen  239 LLSQIVDLQQRCKQLAAENEEL  260 (306)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHH
Confidence            6666667777777666666666

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.24  E-value=7.9  Score=44.79  Aligned_cols=57  Identities=18%  Similarity=0.339  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          670 RMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESL  726 (910)
Q Consensus       670 ~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE~rl~e~eee~e~l  726 (910)
                      ...+|..+..++...++++.-+...+.+....+......+...-.++.-+-+.+..+
T Consensus       316 ~iseiqkLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~~~er~~~l~e~v~al  372 (772)
T KOG0999|consen  316 NISEIQKLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQRERVDRLTEHVQAL  372 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHHHHHHHHHHHHHHH
Confidence            345556666666666666666666666655554444333444444444444445444

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=95.19  E-value=5.7  Score=45.91  Aligned_cols=24  Identities=17%  Similarity=0.147  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          738 VKKLEDLLESERRSRAAANAMAER  761 (910)
Q Consensus       738 i~~Le~~le~e~~~~~ea~~r~e~  761 (910)
                      +..+...+......+..+...++.
T Consensus       248 l~~~~~~l~~~~~~l~~~~~~l~~  271 (423)
T TIGR01843       248 LTEAQARLAELRERLNKARDRLQR  271 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344444444444444444444444

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=95.06  E-value=12  Score=46.07  Aligned_cols=10  Identities=30%  Similarity=0.614  Sum_probs=3.5

Q ss_pred             HHHHHHHHHH
Q 002544          674 IERVQRQIES  683 (910)
Q Consensus       674 ie~~~~~ie~  683 (910)
                      ++.+..++..
T Consensus       451 ~~~~~~~i~~  460 (650)
T TIGR03185       451 LETLKEAIEA  460 (650)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=95.05  E-value=6.6  Score=42.92  Aligned_cols=107  Identities=17%  Similarity=0.244  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          520 QQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQS  599 (910)
Q Consensus       520 q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~  599 (910)
                      ..++..+..++-.++..+..+|..+...+.....+....++++..+.+++-.++...+.+-.+-++|...+.       .
T Consensus       194 EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~-------~  266 (306)
T PF04849_consen  194 EEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQ-------A  266 (306)
T ss_pred             cHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-------H
Confidence            333444444444444444444444444444333333333333333333333333333333333333333333       3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          600 FEREARIMEQDKVYLEQKYKSEFERFEEVQERCK  633 (910)
Q Consensus       600 lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~  633 (910)
                      .......|..++.++++++.+...-+.+++.++.
T Consensus       267 ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk  300 (306)
T PF04849_consen  267 SKESQRQLQAELQELQDKYAECMAMLHEAQEELK  300 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555666654444444444444443

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=94.98  E-value=5.3  Score=41.42  Aligned_cols=55  Identities=20%  Similarity=0.269  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          534 LAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSE  588 (910)
Q Consensus       534 ~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~  588 (910)
                      +..+.+++.+++.+....+..+.++..+...+..-+..+..++..|+..+.....
T Consensus        29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~k   83 (201)
T PF13851_consen   29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEK   83 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555555555555555555555555555555555555554433

>PRK10698 phage shock protein PspA; Provisional

Probab=94.97  E-value=5.8  Score=41.83  Aligned_cols=86  Identities=13%  Similarity=0.234  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 002544          413 NISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTK----Q----KAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQ  484 (910)
Q Consensus       413 ~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e----~----~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q  484 (910)
                      +...-.....+.++++.....+.+|..+.+.++..    +    =..+..+...+..|+.+++.....+..+...+..++
T Consensus        47 lA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~  126 (222)
T PRK10698         47 SARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELE  126 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445556667777777788888887766631    1    012444667788888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHH
Q 002544          485 EEVEEWKRKYGVAV  498 (910)
Q Consensus       485 ~Elee~~~k~e~~~  498 (910)
                      ..+.+++.+.+.-.
T Consensus       127 ~ki~eak~k~~~L~  140 (222)
T PRK10698        127 NKLSETRARQQALM  140 (222)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888888877754

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=94.80  E-value=7.4  Score=42.19  Aligned_cols=62  Identities=18%  Similarity=0.215  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          534 LAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNA  595 (910)
Q Consensus       534 ~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~  595 (910)
                      +..+..++..+..+..........+....+....+...+...+..+...|.++..++...+.
T Consensus        54 l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~  115 (264)
T PF06008_consen   54 LESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE  115 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            44444444444444444444444444444444444444444444444444444444444333

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=94.79  E-value=7.2  Score=49.02  Aligned_cols=32  Identities=13%  Similarity=0.250  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          546 TKIEHAEQCLTTLRLELKAAESKMRSYEVEIS  577 (910)
Q Consensus       546 ~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~  577 (910)
                      .-..-+..++..++.++..++.++..+.....
T Consensus       194 ~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~  225 (754)
T TIGR01005       194 AAADFLAPEIADLSKQSRDAEAEVAAYRAQSD  225 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            33344566677777777777777777776543

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=94.66  E-value=13  Score=44.39  Aligned_cols=28  Identities=25%  Similarity=0.534  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002544          350 GSERSSLMLKYRSIEDNMKLLKKQLEDS  377 (910)
Q Consensus       350 eke~~~L~~e~~~le~e~e~l~k~lee~  377 (910)
                      ..+...+...+..++.++..+...+.++
T Consensus       108 ~~e~a~lk~~l~e~~~El~~l~~~l~~l  135 (511)
T PF09787_consen  108 SSELAVLKIRLQELDQELRRLRRQLEEL  135 (511)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555666666666666665555

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57

Probab=94.65  E-value=5.4  Score=40.00  Aligned_cols=30  Identities=23%  Similarity=0.236  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 002544          452 EDQVCSEIEVLKSRSTAAEARLAAAREQAL  481 (910)
Q Consensus       452 k~kl~~eleel~~~~ee~e~~~~~le~~~~  481 (910)
                      ...+..+..++..++..++.+|+-|++++.
T Consensus        52 ~~e~~~q~~dl~~qL~aAEtRCslLEKQLe   81 (178)
T PF14073_consen   52 HQELSKQNQDLSSQLSAAETRCSLLEKQLE   81 (178)
T ss_pred             cchhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455577888888888888888887764

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=94.60  E-value=8.5  Score=42.02  Aligned_cols=65  Identities=18%  Similarity=0.272  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          555 LTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVN-AKAQSFEREARIMEQDKVYLEQKYK  619 (910)
Q Consensus       555 i~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~-~~~~~lEk~~~~Le~e~~el~~~l~  619 (910)
                      +..|...+..+......+......|..+.-++...++... .-+..|.++...|..++..|+.++.
T Consensus       137 V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~  202 (310)
T PF09755_consen  137 VNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLE  202 (310)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3444444444444444444455555555555555555433 3456677777777777777777654

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=94.47  E-value=14  Score=44.04  Aligned_cols=17  Identities=35%  Similarity=0.636  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 002544          710 ALLEARVEEREKEIESL  726 (910)
Q Consensus       710 ~elE~rl~e~eee~e~l  726 (910)
                      ..+..++.+++.++..+
T Consensus       358 s~~~~k~~~ke~E~q~l  374 (511)
T PF09787_consen  358 SPLQLKLKEKESEIQKL  374 (511)
T ss_pred             ChHHHHHHHHHHHHHHH
Confidence            34555555666566555

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=94.29  E-value=12  Score=42.54  Aligned_cols=14  Identities=36%  Similarity=0.795  Sum_probs=10.4

Q ss_pred             ccCCCChHHHHHHH
Q 002544          316 SCHGPGKWQKLATF  329 (910)
Q Consensus       316 ~~~gp~k~~~l~~f  329 (910)
                      .|.||--|.++-.+
T Consensus       185 sAI~ph~Wp~iLgM  198 (622)
T COG5185         185 SAIGPHNWPKILGM  198 (622)
T ss_pred             hccCCcchHHHHHH
Confidence            46799999886533

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=94.23  E-value=7.9  Score=40.14  Aligned_cols=57  Identities=19%  Similarity=0.351  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          382 SEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWK  438 (910)
Q Consensus       382 ~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~k  438 (910)
                      -++++++.++|.+++...+...+....+..+...|..-+..+..++..++.++..+.
T Consensus        26 L~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~   82 (201)
T PF13851_consen   26 LELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYE   82 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            335677777777777766666666666666666666666666666665555555443

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=93.93  E-value=17  Score=43.29  Aligned_cols=16  Identities=13%  Similarity=0.154  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHHHHHH
Q 002544          576 ISSQKLETKELSEKLE  591 (910)
Q Consensus       576 ~~~L~~el~dL~~~le  591 (910)
                      +..++.++..+...+.
T Consensus       256 l~~l~~~l~~l~~~y~  271 (498)
T TIGR03007       256 IEALEKQLDALRLRYT  271 (498)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            3333333333333333

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=93.89  E-value=13  Score=41.20  Aligned_cols=35  Identities=26%  Similarity=0.400  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002544          667 AMERMAVIERVQRQIESLERQKTDLTNEVNRIRES  701 (910)
Q Consensus       667 ~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~  701 (910)
                      ...+..+++.++.++..|++.+..+..|.+++..+
T Consensus       128 re~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~E  162 (319)
T PF09789_consen  128 REDLVEQLEKLREQIEQLERDLQSLLDEKEELVTE  162 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566666666666666666666666555544

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=93.84  E-value=17  Score=42.51  Aligned_cols=19  Identities=16%  Similarity=0.200  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 002544          599 SFEREARIMEQDKVYLEQK  617 (910)
Q Consensus       599 ~lEk~~~~Le~e~~el~~~  617 (910)
                      .+..++..++.++.++...
T Consensus       258 ~l~~~l~~le~~l~~l~~~  276 (444)
T TIGR03017       258 NLKTDIARAESKLAELSQR  276 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444333

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=93.65  E-value=36  Score=45.70  Aligned_cols=83  Identities=16%  Similarity=0.222  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          575 EISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQ--KYKSEFERFEEVQERCKVAEKEAKKATELADRERAE  652 (910)
Q Consensus       575 e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~--~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e  652 (910)
                      .+..|..+|..+..++..+...+..+...+..|..+...+-.  .+......+......+..+..++..+...+......
T Consensus       743 ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~  822 (1353)
T TIGR02680       743 RIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAA  822 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444333211  112222333444444444444444444444444444


Q ss_pred             HHHHH
Q 002544          653 AAAAR  657 (910)
Q Consensus       653 ~~~~~  657 (910)
                      +..+.
T Consensus       823 ~~~a~  827 (1353)
T TIGR02680       823 WKQAR  827 (1353)
T ss_pred             HHHHH
Confidence            33333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=93.54  E-value=11  Score=39.53  Aligned_cols=80  Identities=20%  Similarity=0.299  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          418 EKSSSLSKTVDSLKNEISDWKRKYDQVLTK--------QKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEE  489 (910)
Q Consensus       418 ~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e--------~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee  489 (910)
                      .....+.++++.+...+..|..+...++..        .=..+..+..++..++..+.........+...+..+...+.+
T Consensus        51 a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e  130 (221)
T PF04012_consen   51 ANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEE  130 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344445555555555555555544421        111234445555666666666666666666666666666666


Q ss_pred             HHHHHHHH
Q 002544          490 WKRKYGVA  497 (910)
Q Consensus       490 ~~~k~e~~  497 (910)
                      ++.+.+..
T Consensus       131 ~k~k~~~l  138 (221)
T PF04012_consen  131 LKSKREEL  138 (221)
T ss_pred             HHHHHHHH
Confidence            66555553

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=93.53  E-value=1.4  Score=44.96  Aligned_cols=84  Identities=18%  Similarity=0.218  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          554 CLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCK  633 (910)
Q Consensus       554 ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~  633 (910)
                      .+.+++..+++...++..+.+++..|-.++.+++..+++.+..+..++.....|+..+..+...+..+..+++++...++
T Consensus       129 ~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~E  208 (290)
T COG4026         129 EYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVE  208 (290)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccccc
Confidence            35577788888888888888888888888888888888888888888888888888888887777777777777776665


Q ss_pred             HHHH
Q 002544          634 VAEK  637 (910)
Q Consensus       634 ~~e~  637 (910)
                      -.+.
T Consensus       209 l~e~  212 (290)
T COG4026         209 LPEE  212 (290)
T ss_pred             chHH
Confidence            5543

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=93.44  E-value=6.3  Score=42.24  Aligned_cols=63  Identities=25%  Similarity=0.367  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          555 LTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK  617 (910)
Q Consensus       555 i~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~  617 (910)
                      ....+..|......+..|......++.+-..|......+......|.........+...|...
T Consensus        21 ~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e   83 (246)
T PF00769_consen   21 MRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQE   83 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444444444444444444444433

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=93.30  E-value=14  Score=40.24  Aligned_cols=68  Identities=12%  Similarity=0.138  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          555 LTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEF  622 (910)
Q Consensus       555 i~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~  622 (910)
                      +....+.+++-+.....+......|..++-.+..-+-..+...+.+|.-++.++.+...++-++++..
T Consensus        87 lr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~  154 (401)
T PF06785_consen   87 LRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQ  154 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            33444445555555555666666666666666666666667777777777777777666666544333

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=93.26  E-value=10  Score=45.38  Aligned_cols=41  Identities=20%  Similarity=0.382  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          737 TVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQ  777 (910)
Q Consensus       737 ~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~  777 (910)
                      .++.|..+++...+.+.+.....+.+..-++.+.+.++.+.
T Consensus       217 ~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~  257 (916)
T KOG0249|consen  217 DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR  257 (916)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            34445555555555555555555555554445544444443

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=93.20  E-value=20  Score=41.41  Aligned_cols=98  Identities=17%  Similarity=0.255  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          538 EEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK  617 (910)
Q Consensus       538 e~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~  617 (910)
                      ..++.+...++.....+|.....++....+.+..|...+..++..+..+..+.+....-+..+....+.+..++.+++++
T Consensus       204 ~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDk  283 (596)
T KOG4360|consen  204 VKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDK  283 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            33444444444444455555555555555555666666666666666666666666666666677777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 002544          618 YKSEFERFEEVQERCKVA  635 (910)
Q Consensus       618 l~e~~~~~eE~e~~l~~~  635 (910)
                      +.+....++|.+.+++.+
T Consensus       284 yAE~m~~~~EaeeELk~l  301 (596)
T KOG4360|consen  284 YAECMQMLHEAEEELKCL  301 (596)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            666666666666555554

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=93.18  E-value=5.5  Score=37.64  Aligned_cols=42  Identities=21%  Similarity=0.271  Sum_probs=23.0

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          455 VCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGV  496 (910)
Q Consensus       455 l~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~  496 (910)
                      +..++.++..+++.+-.-+..-.+....++..+.|++.-|..
T Consensus        73 L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~  114 (120)
T PF12325_consen   73 LEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYRE  114 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555554555555555566666666655554

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=92.96  E-value=32  Score=43.12  Aligned_cols=19  Identities=26%  Similarity=0.501  Sum_probs=11.3

Q ss_pred             CCCcHHHHHHHHHHHHHHh
Q 002544          128 DRLRPEFRAGLDALTKFVF  146 (910)
Q Consensus       128 ~~L~~eF~~~~~~l~~~i~  146 (910)
                      .+|...|--|+++||.++-
T Consensus       130 ~elv~~fNIQi~NLCqFLp  148 (1072)
T KOG0979|consen  130 EELVAHFNIQIDNLCQFLP  148 (1072)
T ss_pred             HHHHHHHhcccCchhhhcc
Confidence            3455556666666666654

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=92.92  E-value=12  Score=37.98  Aligned_cols=63  Identities=22%  Similarity=0.258  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          576 ISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKE  638 (910)
Q Consensus       576 ~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e  638 (910)
                      -..|+.+...+...+++-+..+..+.......-.-+.++++++.........+..++......
T Consensus        44 FeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~  106 (177)
T PF13870_consen   44 FEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEE  106 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444455555555555555555555555555555555444444444444444443333

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=92.76  E-value=14  Score=38.59  Aligned_cols=10  Identities=30%  Similarity=0.122  Sum_probs=6.5

Q ss_pred             ccCCCCCCCC
Q 002544          829 KRSRSTTSPL  838 (910)
Q Consensus       829 ~~~~~~~~~~  838 (910)
                      |+++|+..|+
T Consensus       299 k~~rs~si~~  308 (333)
T KOG1853|consen  299 KVERSDSILS  308 (333)
T ss_pred             cccccCcccc
Confidence            7777765553

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=92.59  E-value=2.8  Score=35.79  Aligned_cols=67  Identities=21%  Similarity=0.343  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          561 ELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEE  627 (910)
Q Consensus       561 ~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE  627 (910)
                      .++.++.++..+-.++..|+.++.+|..+..........|......|..+...++..+..+-.++++
T Consensus         5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~   71 (72)
T PF06005_consen    5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLEE   71 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            4566667777777777777777777777777777777777888888888888887776666555543

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57

Probab=92.56  E-value=13  Score=37.46  Aligned_cols=80  Identities=18%  Similarity=0.258  Sum_probs=51.3

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          353 RSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKN  432 (910)
Q Consensus       353 ~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~  432 (910)
                      ++.|+.+|+.++=+-......+..+......|.+.++....+-...-.+......++..++++.+++|.-|.++|+-.+.
T Consensus         6 LK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLeyMRk   85 (178)
T PF14073_consen    6 LKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEYMRK   85 (178)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566666666666666666666665555566666655544433444445556777788888888888888888875554

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=92.53  E-value=23  Score=40.44  Aligned_cols=119  Identities=14%  Similarity=0.269  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          569 MRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADR  648 (910)
Q Consensus       569 i~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~  648 (910)
                      ....++....|+.-+......+.+.+.....|.-+++.+....-.|++++-.+-......-..+-++       ...+..
T Consensus       385 Knd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEm-------dk~Lsk  457 (527)
T PF15066_consen  385 KNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEM-------DKTLSK  457 (527)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHH-------HHHhhh
Confidence            3455566666666666666666666666666666666666666666666544433333332222222       222223


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002544          649 ERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNR  697 (910)
Q Consensus       649 l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~  697 (910)
                      ...+++.++..+.++++.   ....++.+.+..+..+.+...|+.|...
T Consensus       458 KeeeverLQ~lkgelEka---t~SALdlLkrEKe~~EqefLslqeEfQk  503 (527)
T PF15066_consen  458 KEEEVERLQQLKGELEKA---TTSALDLLKREKETREQEFLSLQEEFQK  503 (527)
T ss_pred             hHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444421   1123444445555555555555555543

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=92.44  E-value=2.3  Score=43.86  Aligned_cols=25  Identities=20%  Similarity=0.244  Sum_probs=3.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          557 TLRLELKAAESKMRSYEVEISSQKL  581 (910)
Q Consensus       557 ~l~~~lee~~~ki~~le~e~~~L~~  581 (910)
                      .+...+..+...+......+..|+.
T Consensus        99 ~~~~~l~~l~~~~~~~~~~l~~l~~  123 (194)
T PF08614_consen   99 ELNDELQELEKELSEKERRLAELEA  123 (194)
T ss_dssp             ---------------HHHHHHHHHH
T ss_pred             ccccccchhhhhHHHHHHHHHHHHH
Confidence            3333333333333333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=92.37  E-value=9.3  Score=36.10  Aligned_cols=23  Identities=22%  Similarity=0.205  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 002544          568 KMRSYEVEISSQKLETKELSEKL  590 (910)
Q Consensus       568 ki~~le~e~~~L~~el~dL~~~l  590 (910)
                      .+..+...+..+..+|-.+....
T Consensus        38 el~~l~~~r~~l~~Eiv~l~~~~   60 (120)
T PF12325_consen   38 ELARLEAERDELREEIVKLMEEN   60 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444433

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=92.23  E-value=7.8  Score=43.97  Aligned_cols=45  Identities=11%  Similarity=0.160  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          399 ADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQ  443 (910)
Q Consensus       399 lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee  443 (910)
                      .....+...+++.+...++.+...+.+.-..+.....-|+.++++
T Consensus       377 kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~  421 (493)
T KOG0804|consen  377 KKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKE  421 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            333333444444444444444444333333334444445555443

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=92.09  E-value=35  Score=41.54  Aligned_cols=47  Identities=13%  Similarity=0.073  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          571 SYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK  617 (910)
Q Consensus       571 ~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~  617 (910)
                      +|..-...|+.++.+....++.+...-.+|-+-+..+..+-..+...
T Consensus       431 sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~  477 (861)
T PF15254_consen  431 SLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKM  477 (861)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            33334445555555555555555555555555444444444444443

>PF13514 AAA_27: AAA domain

Probab=92.06  E-value=52  Score=43.40  Aligned_cols=15  Identities=27%  Similarity=0.673  Sum_probs=8.5

Q ss_pred             CCCCceeeccCCCCC
Q 002544          101 FPDRECFTLVRPLSN  115 (910)
Q Consensus       101 F~~~~cf~l~~P~~~  115 (910)
                      ||.+.-+-|.||..+
T Consensus        23 fp~r~~~~f~~p~~~   37 (1111)
T PF13514_consen   23 FPTRSPYNFYHPKNG   37 (1111)
T ss_pred             CCCCCCcccCCCCCC
Confidence            565655555666544

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=91.93  E-value=10  Score=42.83  Aligned_cols=13  Identities=23%  Similarity=0.626  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHH
Q 002544          431 KNEISDWKRKYDQ  443 (910)
Q Consensus       431 k~e~~~~kkk~Ee  443 (910)
                      ......|+..+|-
T Consensus       190 ~vd~~eWklEvER  202 (359)
T PF10498_consen  190 KVDPAEWKLEVER  202 (359)
T ss_pred             cCCHHHHHHHHHH
Confidence            3456678766553

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=91.91  E-value=12  Score=39.99  Aligned_cols=21  Identities=33%  Similarity=0.599  Sum_probs=10.6

Q ss_pred             HHHHHHhcCchhhhhhccCCChH
Q 002544          874 LKQELTKHNFGAELLQLRNPNKK  896 (910)
Q Consensus       874 ~~~~~~~~~~~~~~~~~~~~~~~  896 (910)
                      |++-|..  ...+|-.+|-++|.
T Consensus       187 lq~QL~~--L~~EL~~~kde~k~  207 (246)
T PF00769_consen  187 LQEQLKE--LKSELEQLKDEEKQ  207 (246)
T ss_dssp             HHHHHHH--HHHHHHTTB-CCG-
T ss_pred             HHHHHHH--HHHHHHHHhhhhcc
Confidence            4444433  34566677766664

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=91.88  E-value=2.9  Score=43.13  Aligned_cols=16  Identities=19%  Similarity=0.333  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHH
Q 002544          579 QKLETKELSEKLEAVN  594 (910)
Q Consensus       579 L~~el~dL~~~le~~~  594 (910)
                      +...+..+...+....
T Consensus        93 l~~~L~~~~~~l~~l~  108 (194)
T PF08614_consen   93 LAQQLVELNDELQELE  108 (194)
T ss_dssp             ----------------
T ss_pred             ccccccccccccchhh
Confidence            3333333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=91.60  E-value=27  Score=39.14  Aligned_cols=16  Identities=6%  Similarity=0.113  Sum_probs=6.0

Q ss_pred             HHhhhHHHHHHHHHHH
Q 002544          462 LKSRSTAAEARLAAAR  477 (910)
Q Consensus       462 l~~~~ee~e~~~~~le  477 (910)
                      ...-|.++...+....
T Consensus        73 y~~~c~EL~~~I~egr   88 (325)
T PF08317_consen   73 YQFSCRELKKYISEGR   88 (325)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.60  E-value=8.7  Score=47.57  Aligned_cols=40  Identities=20%  Similarity=0.310  Sum_probs=15.6

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          457 SEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGV  496 (910)
Q Consensus       457 ~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~  496 (910)
                      ..+.-|+.+.+..-..+..+...+..++...+.+..+|+.
T Consensus       565 ~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~  604 (717)
T PF10168_consen  565 RRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEE  604 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333344444444444444444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=91.55  E-value=21  Score=40.46  Aligned_cols=78  Identities=24%  Similarity=0.296  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          557 TLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAE  636 (910)
Q Consensus       557 ~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e  636 (910)
                      +|+..++........+..........|..+..++...-..+..-|+-+.   .++..+-..|.....++.+++.+...+.
T Consensus       217 DWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN---~qle~l~~eYr~~~~~ls~~~~~y~~~s  293 (359)
T PF10498_consen  217 DWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYIN---NQLEPLIQEYRSAQDELSEVQEKYKQAS  293 (359)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444444444444444444444444444444444444333333333332   3444444443333333444443333333


Q ss_pred             H
Q 002544          637 K  637 (910)
Q Consensus       637 ~  637 (910)
                      .
T Consensus       294 ~  294 (359)
T PF10498_consen  294 E  294 (359)
T ss_pred             h
Confidence            3

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=91.12  E-value=4  Score=45.39  Aligned_cols=9  Identities=33%  Similarity=0.815  Sum_probs=3.4

Q ss_pred             HHHHHHHHH
Q 002544          691 LTNEVNRIR  699 (910)
Q Consensus       691 Le~Ele~~~  699 (910)
                      ....++.++
T Consensus       125 ~~~~L~~L~  133 (314)
T PF04111_consen  125 ASNQLDRLR  133 (314)
T ss_dssp             HHHHHHCHH
T ss_pred             HHHHHHHHH
Confidence            333343333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=91.07  E-value=22  Score=37.24  Aligned_cols=28  Identities=21%  Similarity=0.400  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          694 EVNRIRESELEALSKVALLEARVEEREK  721 (910)
Q Consensus       694 Ele~~~~~~~~~~~~~~elE~rl~e~ee  721 (910)
                      -+++....+..+..+.+-||.++.+++.
T Consensus       134 sleDfeqrLnqAIErnAfLESELdEke~  161 (333)
T KOG1853|consen  134 SLEDFEQRLNQAIERNAFLESELDEKEV  161 (333)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            3444444444444444445544444433

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=91.04  E-value=10  Score=44.78  Aligned_cols=28  Identities=11%  Similarity=-0.005  Sum_probs=15.0

Q ss_pred             HhccCCCcc----cCCcccChHHHHHHHHHHH
Q 002544          145 VFERTRPKQ----VGATVLTGPVLIGITESYL  172 (910)
Q Consensus       145 i~~~~~pK~----i~G~~ltg~~l~~l~~~yv  172 (910)
                      |+..++|++    +-|.+---..|-.|++.|-
T Consensus        72 il~~lP~~tkLVQVTg~~g~~~sL~~lArr~G  103 (652)
T COG2433          72 ILKRLPEGTKLVQVTGRPGEQESLWELARRHG  103 (652)
T ss_pred             HHHhCCCCceEEEEeCCCCCcchHHHHHHHhC
Confidence            344555544    3344444446777777763

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=91.03  E-value=25  Score=38.45  Aligned_cols=57  Identities=14%  Similarity=0.193  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          386 KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYD  442 (910)
Q Consensus       386 k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~E  442 (910)
                      ..+|+-+..+..+-..++.++.++..++.+.+.+...|.+++.....-.......|.
T Consensus       130 q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQ  186 (401)
T PF06785_consen  130 QHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQ  186 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            345555555555555566666666666666666666666666655444444444443

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=90.98  E-value=34  Score=39.17  Aligned_cols=68  Identities=21%  Similarity=0.376  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 002544          402 YTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQA  480 (910)
Q Consensus       402 ~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~  480 (910)
                      ....+..+..+.+.|..+..-+..-+...++..+.|--.++           +|+.+++....++..+.+..+.|..++
T Consensus       293 ~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~-----------kl~~eie~kEeei~~L~~~~d~L~~q~  360 (622)
T COG5185         293 ISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLE-----------KLKSEIELKEEEIKALQSNIDELHKQL  360 (622)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHH-----------HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            34455555556666666655555555555666666654433           344444444444444444444444444

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.89  E-value=34  Score=39.03  Aligned_cols=30  Identities=20%  Similarity=0.275  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          555 LTTLRLELKAAESKMRSYEVEISSQKLETK  584 (910)
Q Consensus       555 i~~l~~~lee~~~ki~~le~e~~~L~~el~  584 (910)
                      |.++...+..+.+.+++-+.....|..+++
T Consensus       347 IqeleqdL~a~~eei~~~eel~~~Lrsele  376 (521)
T KOG1937|consen  347 IQELEQDLEAVDEEIESNEELAEKLRSELE  376 (521)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            333334444444444433333334444333

>KOG2991 consensus Splicing regulator [RNA processing and modification]

Probab=90.85  E-value=24  Score=37.16  Aligned_cols=14  Identities=7%  Similarity=0.050  Sum_probs=6.7

Q ss_pred             CCCcchHHHHHHHH
Q 002544          294 SSDASIDNVVKVLD  307 (910)
Q Consensus       294 ~~~~~~~~~~~~~~  307 (910)
                      .++|++..|....+
T Consensus        21 ~~~~n~~s~~dl~d   34 (330)
T KOG2991|consen   21 RASGNRRSFGDLED   34 (330)
T ss_pred             cCCcchhhccCccc
Confidence            34555555544333

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=90.79  E-value=3  Score=35.76  Aligned_cols=64  Identities=20%  Similarity=0.322  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          563 KAAESKMRSYEVEISSQKLETKELSEKLEAVNAK-------AQSFEREARIMEQDKVYLEQKYKSEFERFE  626 (910)
Q Consensus       563 ee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~-------~~~lEk~~~~Le~e~~el~~~l~e~~~~~e  626 (910)
                      +.++.+|...-.++.-|+-+|++|..+-..+...       ...|..+...+..+...|++++..+-.+++
T Consensus         7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~   77 (79)
T PRK15422          7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME   77 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3444455555555555555555555544444444       444777777777777777777666555554

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.03  E-value=31  Score=37.13  Aligned_cols=44  Identities=18%  Similarity=0.452  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          399 ADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYD  442 (910)
Q Consensus       399 lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~E  442 (910)
                      +......++.++..+..++.+++.|..+++.+..++...+.+.+
T Consensus        33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~   76 (265)
T COG3883          33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEID   76 (265)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666666666666666666666666666666655554433

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=89.83  E-value=31  Score=36.83  Aligned_cols=54  Identities=22%  Similarity=0.279  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhh
Q 002544          735 ASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNET  788 (910)
Q Consensus       735 ~~~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~~e~~~~~~~~~  788 (910)
                      ..++..++.++.....-..-...+.+-+..++..++..+..++..+...|..++
T Consensus       163 ~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~ea  216 (240)
T PF12795_consen  163 EAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRRQEA  216 (240)
T ss_pred             HHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555555554444444444455566677777888888888888888887776

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=89.65  E-value=36  Score=37.36  Aligned_cols=35  Identities=11%  Similarity=0.088  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          403 TSRINNLQGENISLREKSSSLSKTVDSLKNEISDW  437 (910)
Q Consensus       403 ~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~  437 (910)
                      ......+..+......++..|...+..++...-.+
T Consensus        33 ~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~   67 (310)
T PF09755_consen   33 QQENRVLKRELETEKARCKHLQEENRALREASVRI   67 (310)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333334444444444444444443333

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=89.65  E-value=7.5  Score=43.25  Aligned_cols=20  Identities=15%  Similarity=0.145  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 002544          668 MERMAVIERVQRQIESLERQ  687 (910)
Q Consensus       668 ~e~~~~ie~~~~~ie~Le~e  687 (910)
                      ..+..++.-...+++.|.+.
T Consensus       116 ~sl~~q~~~~~~~L~~L~kt  135 (314)
T PF04111_consen  116 DSLKNQYEYASNQLDRLRKT  135 (314)
T ss_dssp             HHHHHHHHHHHHHHHCHHT-
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            33344444444555555444

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=89.40  E-value=22  Score=37.88  Aligned_cols=114  Identities=14%  Similarity=0.210  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          560 LELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEA  639 (910)
Q Consensus       560 ~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~  639 (910)
                      ..+.+++..++.|.+++..-+-+|+.|+.-+......+.+-......|..+...|-+.++.++..-+.+...+...+   
T Consensus        18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke---   94 (307)
T PF10481_consen   18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKE---   94 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhH---
Confidence            35666777777888888888888888887777777666666666666666666655543333333332222222221   


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002544          640 KKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRES  701 (910)
Q Consensus       640 ~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~  701 (910)
                                               ..+.-++.++..+..+++.|+.++.++..++++....
T Consensus        95 -------------------------~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~  131 (307)
T PF10481_consen   95 -------------------------SQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQA  131 (307)
T ss_pred             -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                                     1233344555666667777777777777777766654

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=89.27  E-value=20  Score=38.35  Aligned_cols=75  Identities=29%  Similarity=0.388  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          552 EQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQER  631 (910)
Q Consensus       552 e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~  631 (910)
                      +..|..|+..|.+.++++..-+.+|..|+.+|..+.+++-+.                           ++.++ |++-.
T Consensus        67 EV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEE---------------------------ECHRV-EAQLA  118 (305)
T PF15290_consen   67 EVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEE---------------------------ECHRV-EAQLA  118 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHH-HHHHH
Confidence            334445555555555555555555555555555444444322                           22222 34445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 002544          632 CKVAEKEAKKATELADRERAEAA  654 (910)
Q Consensus       632 l~~~e~e~~~~~~~~e~l~~e~~  654 (910)
                      |+++.+++++++..++.++..+.
T Consensus       119 LKEARkEIkQLkQvieTmrssL~  141 (305)
T PF15290_consen  119 LKEARKEIKQLKQVIETMRSSLA  141 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhc
Confidence            55666666666666665555543

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=89.19  E-value=33  Score=36.26  Aligned_cols=102  Identities=12%  Similarity=0.167  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Q 002544          388 YDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLT--------KQKAMEDQVCSEI  459 (910)
Q Consensus       388 le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~--------e~~~~k~kl~~el  459 (910)
                      ++..|.++...+....+.+..+......++.       +++.+.....+|..+...++.        +.=..+..+...+
T Consensus        29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~-------~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~  101 (225)
T COG1842          29 LEQAIRDMESELAKARQALAQAIARQKQLER-------KLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLA  101 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444       344444444444444443331        1112244445555


Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          460 EVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGV  496 (910)
Q Consensus       460 eel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~  496 (910)
                      ..+...+..+......+......+...+.+++.+.+.
T Consensus       102 ~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~  138 (225)
T COG1842         102 KALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEA  138 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555556666666666666666655544444

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=89.17  E-value=51  Score=38.48  Aligned_cols=16  Identities=6%  Similarity=0.171  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHHHHHH
Q 002544          539 EEMKEKATKIEHAEQC  554 (910)
Q Consensus       539 ~ei~~~~~kl~~~e~e  554 (910)
                      .++..++.++...+..
T Consensus       178 ~ql~~~~~~l~~ae~~  193 (444)
T TIGR03017       178 QQIAALREDLARAQSK  193 (444)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=88.79  E-value=34  Score=35.92  Aligned_cols=37  Identities=8%  Similarity=0.101  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          577 SSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVY  613 (910)
Q Consensus       577 ~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~e  613 (910)
                      ..|..-|.++...+..++..+...-...+.++.++..
T Consensus        26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~   62 (221)
T PF04012_consen   26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDE   62 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444433333333

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=88.78  E-value=63  Score=39.06  Aligned_cols=36  Identities=19%  Similarity=0.286  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 002544          452 EDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEV  487 (910)
Q Consensus       452 k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~El  487 (910)
                      +.+++..+-+...+..+.+.++..++.....++.+-
T Consensus        51 ~~~lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~   86 (916)
T KOG0249|consen   51 NTKLQRDIREAMAQKEDMEERITTLEKRFLNAQRES   86 (916)
T ss_pred             HHHHhhhhhhHHhhhcccccccchHHHHHHhccCCC
Confidence            444555555556666666666666666665555543

>TIGR00634 recN DNA repair protein RecN

Probab=88.77  E-value=64  Score=39.10  Aligned_cols=10  Identities=20%  Similarity=0.145  Sum_probs=3.9

Q ss_pred             HHHHHHHHHH
Q 002544          737 TVKKLEDLLE  746 (910)
Q Consensus       737 ~i~~Le~~le  746 (910)
                      ++..+...|-
T Consensus       361 ~l~~~a~~Ls  370 (563)
T TIGR00634       361 ELDKAAVALS  370 (563)
T ss_pred             HHHHHHHHHH
Confidence            3333433333

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=88.71  E-value=9.2  Score=45.15  Aligned_cols=35  Identities=23%  Similarity=0.334  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          601 EREARIMEQDKVYLEQKYKSEFERFEEVQERCKVA  635 (910)
Q Consensus       601 Ek~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~  635 (910)
                      .++++.++.++..|+..+.+...+.++++..+..+
T Consensus       473 ~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l  507 (652)
T COG2433         473 DREIRARDRRIERLEKELEEKKKRVEELERKLAEL  507 (652)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555555444444555555554444

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=88.56  E-value=28  Score=34.66  Aligned_cols=43  Identities=19%  Similarity=0.207  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          571 SYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVY  613 (910)
Q Consensus       571 ~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~e  613 (910)
                      ....+...++.+|.++...+...-..+..|+..-+.....+.+
T Consensus        24 ~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~e   66 (159)
T PF05384_consen   24 QARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAE   66 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444444444333

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=88.18  E-value=34  Score=35.24  Aligned_cols=16  Identities=38%  Similarity=0.574  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHHHHHH
Q 002544          365 DNMKLLKKQLEDSERY  380 (910)
Q Consensus       365 ~e~e~l~k~lee~e~~  380 (910)
                      ++|..|+.++-++...
T Consensus        10 GEIsLLKqQLke~q~E   25 (202)
T PF06818_consen   10 GEISLLKQQLKESQAE   25 (202)
T ss_pred             hhHHHHHHHHHHHHHH
Confidence            3444555555554443

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>TIGR02977 phageshock_pspA phage shock protein A

Probab=88.11  E-value=38  Score=35.64  Aligned_cols=83  Identities=20%  Similarity=0.290  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 002544          413 NISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTK--------QKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQ  484 (910)
Q Consensus       413 ~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e--------~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q  484 (910)
                      +...-.....+.++++.....+.+|..+...++..        .=..+......+..+..++......+..+...+..++
T Consensus        47 lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~  126 (219)
T TIGR02977        47 SARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQ  126 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444445556666666677777666655521        0012333344555555555555555555555555555


Q ss_pred             HHHHHHHHHHH
Q 002544          485 EEVEEWKRKYG  495 (910)
Q Consensus       485 ~Elee~~~k~e  495 (910)
                      ..+.+++.+-+
T Consensus       127 ~ki~~~k~k~~  137 (219)
T TIGR02977       127 AKLAEARARQK  137 (219)
T ss_pred             HHHHHHHHHHH
Confidence            55555554444

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]

Probab=87.83  E-value=17  Score=33.24  Aligned_cols=48  Identities=21%  Similarity=0.293  Sum_probs=40.4

Q ss_pred             HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 002544          738 VKKLEDLL--ESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARL  785 (910)
Q Consensus       738 i~~Le~~l--e~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~~e~~~~~~  785 (910)
                      .+-+|.+|  -+..++++.+..|+++..+++.++...|..++.+++..|.
T Consensus        55 YKliGpvLvkqel~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~  104 (120)
T KOG3478|consen   55 YKLIGPVLVKQELEEARTNVGKRLEFISKEIKRLENQIRDSQEEFEKQRE  104 (120)
T ss_pred             HHHhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34466666  5666788899999999999999999999999999997774

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=87.81  E-value=1.2e+02  Score=41.00  Aligned_cols=11  Identities=27%  Similarity=0.063  Sum_probs=6.4

Q ss_pred             CcccChHHHHH
Q 002544          156 ATVLTGPVLIG  166 (910)
Q Consensus       156 G~~ltg~~l~~  166 (910)
                      |.|+|=..|..
T Consensus       140 ~~plt~~~l~~  150 (1353)
T TIGR02680       140 GIPLTRDRLKE  150 (1353)
T ss_pred             CccCCHHHHHH
Confidence            56666555554

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=87.78  E-value=1e+02  Score=40.35  Aligned_cols=12  Identities=8%  Similarity=0.036  Sum_probs=8.1

Q ss_pred             ccCCCcchHHHH
Q 002544          292 CHSSDASIDNVV  303 (910)
Q Consensus       292 ~~~~~~~~~~~~  303 (910)
                      ...|-|.|..|+
T Consensus       151 v~l~QG~f~~fl  162 (1047)
T PRK10246        151 MLLSQGQFAAFL  162 (1047)
T ss_pred             eeeccccHHHHH
Confidence            456677777776

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=87.75  E-value=64  Score=37.92  Aligned_cols=60  Identities=12%  Similarity=0.171  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          552 EQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDK  611 (910)
Q Consensus       552 e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~  611 (910)
                      ..+|.+|...+..+.++...+..+-..|...+...+...+....++......+..|+.++
T Consensus       419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL  478 (518)
T PF10212_consen  419 MSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDEL  478 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444433333333333333333333333

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=87.70  E-value=5.6  Score=40.75  Aligned_cols=33  Identities=24%  Similarity=0.316  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002544          667 AMERMAVIERVQRQIESLERQKTDLTNEVNRIR  699 (910)
Q Consensus       667 ~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~  699 (910)
                      +.+++..++..+..+.+++.++.+|+..+..+.
T Consensus       158 leele~e~ee~~erlk~le~E~s~LeE~~~~l~  190 (290)
T COG4026         158 LEELEAEYEEVQERLKRLEVENSRLEEMLKKLP  190 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence            333444445555555555555555555444433

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=87.70  E-value=77  Score=38.80  Aligned_cols=15  Identities=27%  Similarity=0.228  Sum_probs=10.1

Q ss_pred             hCCCCceeeccCCCC
Q 002544          100 LFPDRECFTLVRPLS  114 (910)
Q Consensus       100 ~F~~~~cf~l~~P~~  114 (910)
                      -+|..-||+...|+.
T Consensus       136 gip~vp~ht~s~s~s  150 (861)
T PF15254_consen  136 GIPAVPCHTTSGSGS  150 (861)
T ss_pred             CCCCCCcccCCCccc
Confidence            366777877776654

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=87.66  E-value=30  Score=34.00  Aligned_cols=81  Identities=20%  Similarity=0.332  Sum_probs=40.2

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          354 SSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNE  433 (910)
Q Consensus       354 ~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e  433 (910)
                      +.+...+..+..+++.+....           .+++..+..+..++.........+......+.........++..++..
T Consensus        55 e~l~~~~~~l~~d~~~l~~~~-----------~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~  123 (151)
T PF11559_consen   55 EDLSDKLRRLRSDIERLQNDV-----------ERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQ  123 (151)
T ss_pred             HHHHHHHHHHHhHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444442           233344444444444444455555555555555555555555655555


Q ss_pred             HHHHHHHHHHHH
Q 002544          434 ISDWKRKYDQVL  445 (910)
Q Consensus       434 ~~~~kkk~Ee~~  445 (910)
                      +...+.+|...+
T Consensus       124 ~~~~~tq~~~e~  135 (151)
T PF11559_consen  124 LQQRKTQYEHEL  135 (151)
T ss_pred             HHHHHHHHHHHH
Confidence            666555555433

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=87.23  E-value=57  Score=36.81  Aligned_cols=14  Identities=21%  Similarity=0.586  Sum_probs=5.5

Q ss_pred             HHHHHHHHHHHHHH
Q 002544          364 EDNMKLLKKQLEDS  377 (910)
Q Consensus       364 e~e~e~l~k~lee~  377 (910)
                      ...++.++..+...
T Consensus        14 ~~~V~~m~~~L~~~   27 (344)
T PF12777_consen   14 EEQVEEMQEELEEK   27 (344)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            33444444443333

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PRK10869 recombination and repair protein; Provisional

Probab=87.11  E-value=78  Score=38.24  Aligned_cols=42  Identities=14%  Similarity=0.084  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          545 ATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKEL  586 (910)
Q Consensus       545 ~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL  586 (910)
                      ..++...=.+...+...++++........+.+..|+-+++++
T Consensus       156 ~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei  197 (553)
T PRK10869        156 LQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKEL  197 (553)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            333333333344444444444444444444444444444333

>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function

Probab=87.11  E-value=38  Score=34.66  Aligned_cols=41  Identities=17%  Similarity=0.336  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002544          661 SEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRES  701 (910)
Q Consensus       661 ~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~  701 (910)
                      ...+..+.+...-++..+++++.|.+.+.....+++..+..
T Consensus       133 ~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~a  173 (188)
T PF05335_consen  133 EGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKKA  173 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555556666666666666666666666666544

>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []

Probab=87.00  E-value=34  Score=36.28  Aligned_cols=57  Identities=16%  Similarity=0.318  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          554 CLTTLRLELKAAESKMRSYEVEIS------SQKLETKELSEKLEAVNAKAQSFEREARIMEQD  610 (910)
Q Consensus       554 ei~~l~~~lee~~~ki~~le~e~~------~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e  610 (910)
                      .|.+|..+++..+..++++....+      .-+..+..+...++.-+--+..|+.-++.|++.
T Consensus       130 ~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~  192 (233)
T PF04065_consen  130 SIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLDND  192 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            344555555555555554443221      345556666666666666666666666666554

This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG4717 Uncharacterized conserved protein [Function unknown]

Probab=86.87  E-value=91  Score=38.75  Aligned_cols=62  Identities=21%  Similarity=0.242  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          574 VEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQ--DKVYLEQKYKSEFERFEEVQERCKVA  635 (910)
Q Consensus       574 ~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~--e~~el~~~l~e~~~~~eE~e~~l~~~  635 (910)
                      .+...++..++.+..+..+....+..+..++..++.  ....++....++..++.+.-..|..+
T Consensus       774 ~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE~g~~~a~lr~~~~slk~~l~e~ar~Wasl  837 (984)
T COG4717         774 EELALLEEAIDALDEEVEELHAQVAALSRQIAQLEGGGTVAELRQRRESLKEDLEEKARKWASL  837 (984)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444444432  33444444444444444444444333

>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []

Probab=86.81  E-value=41  Score=34.71  Aligned_cols=109  Identities=17%  Similarity=0.235  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          386 KRYDDAINDKKKLADDYTSRINNLQG--ENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLK  463 (910)
Q Consensus       386 k~le~~i~el~~~lee~~~~~~~l~~--~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~  463 (910)
                      +++..-+..++..+....+.+|++..  .+..|...+..+...+..++..+.+.+..|..++..    +...++++.+|=
T Consensus         5 ~~~~~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~----Rs~sQrEvn~LL   80 (207)
T PF05546_consen    5 KKLSFYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQ----RSSSQREVNELL   80 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence            34445555555566666666666653  455666777778888888899999999999988876    667788888887


Q ss_pred             hhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          464 SRST----AAEARLAAAREQALSAQEEVEEWKRKYGVAV  498 (910)
Q Consensus       464 ~~~e----e~e~~~~~le~~~~~~q~Elee~~~k~e~~~  498 (910)
                      .+..    .--+++..|-+.=+.......+.+.+|..+.
T Consensus        81 qRK~sWs~~DleRFT~Lyr~dH~~e~~e~~ak~~l~~aE  119 (207)
T PF05546_consen   81 QRKHSWSPADLERFTELYRNDHENEQAEEEAKEALEEAE  119 (207)
T ss_pred             hcccCCChHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            7743    3334577777766666666666666665543

The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].

>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells

Probab=86.39  E-value=49  Score=35.21  Aligned_cols=41  Identities=20%  Similarity=0.257  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          562 LKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFER  602 (910)
Q Consensus       562 lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk  602 (910)
                      |..+..+....+.++...+.+-......+..+...+..|++
T Consensus       123 Ln~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek  163 (239)
T PF05276_consen  123 LNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEK  163 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=85.81  E-value=40  Score=33.57  Aligned_cols=9  Identities=22%  Similarity=0.626  Sum_probs=3.4

Q ss_pred             HHHHHHHHH
Q 002544          737 TVKKLEDLL  745 (910)
Q Consensus       737 ~i~~Le~~l  745 (910)
                      .+..|...+
T Consensus       113 rl~~l~~ti  121 (159)
T PF05384_consen  113 RLRNLEETI  121 (159)
T ss_pred             HHHHHHHHH
Confidence            333333333

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PF15450 DUF4631: Domain of unknown function (DUF4631)

Probab=85.75  E-value=80  Score=37.01  Aligned_cols=33  Identities=9%  Similarity=0.077  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          581 LETKELSEKLEAVNAKAQSFEREARIMEQDKVY  613 (910)
Q Consensus       581 ~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~e  613 (910)
                      .+...+..+.......+..|++-++.....++.
T Consensus       258 ~E~~~l~eq~~~ld~AV~~Ltk~v~~~q~sL~k  290 (531)
T PF15450_consen  258 SEESKLLEQCRKLDEAVAQLTKFVQQNQKSLNK  290 (531)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444455555555555555544444433

>smart00787 Spc7 Spc7 kinetochore protein

Probab=85.72  E-value=64  Score=35.89  Aligned_cols=20  Identities=15%  Similarity=0.097  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 002544          561 ELKAAESKMRSYEVEISSQK  580 (910)
Q Consensus       561 ~lee~~~ki~~le~e~~~L~  580 (910)
                      -+..+..+...+..+...|+
T Consensus       173 ~~~~l~~~~~~L~~e~~~L~  192 (312)
T smart00787      173 IKPKLRDRKDALEEELRQLK  192 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PRK10869 recombination and repair protein; Provisional

Probab=85.71  E-value=92  Score=37.67  Aligned_cols=15  Identities=7%  Similarity=0.129  Sum_probs=6.2

Q ss_pred             HHHHHHHhhhHHHHH
Q 002544          457 SEIEVLKSRSTAAEA  471 (910)
Q Consensus       457 ~eleel~~~~ee~e~  471 (910)
                      .+++-++-++++.+.
T Consensus       185 ~~~d~l~fql~Ei~~  199 (553)
T PRK10869        185 ARKQLLQYQLKELNE  199 (553)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            334444444444433

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=85.55  E-value=56  Score=35.09  Aligned_cols=17  Identities=24%  Similarity=0.646  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 002544          426 TVDSLKNEISDWKRKYD  442 (910)
Q Consensus       426 qle~~k~e~~~~kkk~E  442 (910)
                      +++.++.++..|..+.+
T Consensus        64 ~l~~ak~eLqe~eek~e   80 (258)
T PF15397_consen   64 QLQQAKAELQEWEEKEE   80 (258)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            45555566666665544

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.42  E-value=16  Score=30.53  Aligned_cols=35  Identities=11%  Similarity=0.332  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          592 AVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFE  626 (910)
Q Consensus       592 ~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~e  626 (910)
                      ++......|+++...+..+...|++++..+-.+++
T Consensus        43 ~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkme   77 (79)
T COG3074          43 NAQHQREALERENEQLKEEQNGWQERLRALLGKME   77 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            33444455566666666666666666555555544

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=85.11  E-value=86  Score=36.86  Aligned_cols=19  Identities=11%  Similarity=0.172  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 002544          663 FENLAMERMAVIERVQRQI  681 (910)
Q Consensus       663 ~~r~~~e~~~~ie~~~~~i  681 (910)
                      .+..+....+.+..++..+
T Consensus       296 ~~~~l~~~~~~l~~a~~~l  314 (457)
T TIGR01000       296 LNQKLLELESKIKSLKEDS  314 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333444444454444433

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells

Probab=84.69  E-value=59  Score=34.62  Aligned_cols=16  Identities=25%  Similarity=0.428  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHHHHH
Q 002544          623 ERFEEVQERCKVAEKE  638 (910)
Q Consensus       623 ~~~eE~e~~l~~~e~e  638 (910)
                      .++.+++.+...++.+
T Consensus       128 ~kVneAE~ek~~ae~e  143 (239)
T PF05276_consen  128 QKVNEAEQEKTRAERE  143 (239)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3344444433333333

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.60  E-value=50  Score=34.98  Aligned_cols=39  Identities=21%  Similarity=0.287  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          572 YEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQD  610 (910)
Q Consensus       572 le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e  610 (910)
                      +.+++..|..+-....+.+..+...+..++.-++..+.+
T Consensus        37 ~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~e   75 (230)
T PF10146_consen   37 YRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESE   75 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=84.60  E-value=66  Score=36.85  Aligned_cols=15  Identities=7%  Similarity=0.377  Sum_probs=6.8

Q ss_pred             HHHHHhcCCCCCCcc
Q 002544          170 SYLDAINNGAVPTIS  184 (910)
Q Consensus       170 ~yv~ain~g~vP~i~  184 (910)
                      .|-..+|+..+-.++
T Consensus       130 ~Fy~efNGk~Fn~le  144 (493)
T KOG0804|consen  130 TFYEEFNGKQFNSLE  144 (493)
T ss_pred             HHHHHcCCCcCCCCC
Confidence            344445554444443

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=84.47  E-value=22  Score=30.44  Aligned_cols=61  Identities=18%  Similarity=0.345  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          386 KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLT  446 (910)
Q Consensus       386 k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~  446 (910)
                      ..++..|..+-..+.-++..+..|..+...+..+...|..+...++.+-..|..++...+.
T Consensus         7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~   67 (72)
T PF06005_consen    7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLG   67 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555666666666666666666677777777777777777777777654443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=84.30  E-value=1.2e+02  Score=37.90  Aligned_cols=152  Identities=16%  Similarity=0.140  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH------HHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 002544          350 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLK---RYDDAIN------DKK-KLADDYTSRINNLQGENISLREK  419 (910)
Q Consensus       350 eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k---~le~~i~------el~-~~lee~~~~~~~l~~~~~~Le~e  419 (910)
                      .+.+..|......+++++..+...++..++.+..+.-   -+..++.      ++. ...+-..++...--+++..|+.+
T Consensus       119 ~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaE  198 (769)
T PF05911_consen  119 EKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAE  198 (769)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555666666666666555333111   1111110      111 23334455555556677788888


Q ss_pred             HHHHHHHHH----------HHHHHHHHHHHHHHHHH------H-H-----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 002544          420 SSSLSKTVD----------SLKNEISDWKRKYDQVL------T-K-----QKAMEDQVCSEIEVLKSRSTAAEARLAAAR  477 (910)
Q Consensus       420 ~~~L~~qle----------~~k~e~~~~kkk~Ee~~------~-e-----~~~~k~kl~~eleel~~~~ee~e~~~~~le  477 (910)
                      |..|+..+-          ..+.+++.+-+.+-+.-      . .     .-.-......+.+-|-.++-..++....|.
T Consensus       199 C~rLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~eeEnk~Lk  278 (769)
T PF05911_consen  199 CQRLRALVRKKLPGPAALAQMKNEVESLGRDSGENRRRRSPSRPSSPHDFSPQNPQKRSKESEFLTERLQAMEEENKMLK  278 (769)
T ss_pred             HHHHHHHHhccCCChHHHHHhHHHHHHhccccccccCCCCCCcccccccccccccccchhhhHHHHHHHHHHHHHHHHHH
Confidence            888865544          44556665533221100      0 0     000012234556677777888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          478 EQALSAQEEVEEWKRKYGVAVREA  501 (910)
Q Consensus       478 ~~~~~~q~Elee~~~k~e~~~~~~  501 (910)
                      +.+.+-.+|+.-.|..|..++.+.
T Consensus       279 e~l~~k~~ELq~sr~~~a~ta~kL  302 (769)
T PF05911_consen  279 EALAKKNSELQFSRNMYAKTASKL  302 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888876544

The function of this family is unknown.

>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A

Probab=84.11  E-value=0.68  Score=33.54  Aligned_cols=33  Identities=33%  Similarity=0.513  Sum_probs=20.8

Q ss_pred             hHhhHHHHHHHHHhcCchhhhhhccCCChHHHHHHHH
Q 002544          867 TKFTVQKLKQELTKHNFGAELLQLRNPNKKEILALYE  903 (910)
Q Consensus       867 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  903 (910)
                      .++||..||..|++||..-    =.+.+|-|+++|++
T Consensus         2 ~sltV~~Lk~iL~~~~I~~----ps~AkKaeLv~L~~   34 (35)
T PF12949_consen    2 KSLTVAQLKRILDEHGIEF----PSNAKKAELVALFN   34 (35)
T ss_dssp             TT--SHHHHHHHHHHT-------SSS--SHHHHHH--
T ss_pred             CcCcHHHHHHHHHHcCCCC----CCCCCHHHHHHHHc
Confidence            4689999999999999642    13788999999976

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.64  E-value=89  Score=35.83  Aligned_cols=52  Identities=12%  Similarity=0.137  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          576 ISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEE  627 (910)
Q Consensus       576 ~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE  627 (910)
                      +..+...|.++...+......+..+-..-+.|..+++.+.++++.-..-.++
T Consensus       384 rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtde  435 (521)
T KOG1937|consen  384 RKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTDE  435 (521)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            4556666666666666666667777777777777777776665555444443

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=83.62  E-value=68  Score=34.44  Aligned_cols=17  Identities=29%  Similarity=0.216  Sum_probs=9.2

Q ss_pred             ccCCCCCCcccccCCCc
Q 002544          840 YTQPEDGGSVFRGDDDN  856 (910)
Q Consensus       840 ~~~~~~~~~~~~~~~~~  856 (910)
                      +-++.||.....++...
T Consensus       195 ~~~t~Dg~~~g~~~~~~  211 (251)
T PF11932_consen  195 YYQTLDGSQAGVWDPAT  211 (251)
T ss_pred             eeECCCccceeeecCCC
Confidence            44566676665544433

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF15294 Leu_zip: Leucine zipper

Probab=83.14  E-value=74  Score=34.53  Aligned_cols=45  Identities=20%  Similarity=0.219  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          448 QKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKR  492 (910)
Q Consensus       448 ~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~  492 (910)
                      +.....+|+.+++.|+.++-..+..+...-+.+..++.++.+++.
T Consensus       130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~  174 (278)
T PF15294_consen  130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD  174 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556688899999999999999999999998889999999987775

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=82.61  E-value=19  Score=30.52  Aligned_cols=58  Identities=17%  Similarity=0.215  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          554 CLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDK  611 (910)
Q Consensus       554 ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~  611 (910)
                      .+..|+..+..+..++...+..++.|..+-.....++..+-..+..|..++..+..++
T Consensus         6 ~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el   63 (69)
T PF14197_consen    6 EIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKEL   63 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444444444444444444444443

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=82.54  E-value=61  Score=33.09  Aligned_cols=50  Identities=12%  Similarity=0.201  Sum_probs=28.9

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          457 SEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALE  506 (910)
Q Consensus       457 ~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~le  506 (910)
                      .+-.....-+.....++..|.++...+...+.+++..-+......++++.
T Consensus       127 ~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~TerdL~~~r~e~~  176 (182)
T PF15035_consen  127 EEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRTATERDLSDMRAEFA  176 (182)
T ss_pred             HHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            33344444455555567777777777777777666555554444444433

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=82.43  E-value=64  Score=33.30  Aligned_cols=16  Identities=38%  Similarity=0.522  Sum_probs=6.3

Q ss_pred             HHHHHhHHHHHHHHHH
Q 002544          684 LERQKTDLTNEVNRIR  699 (910)
Q Consensus       684 Le~e~~~Le~Ele~~~  699 (910)
                      +.++..+|..+|...+
T Consensus       136 l~~e~erL~aeL~~er  151 (202)
T PF06818_consen  136 LRREVERLRAELQRER  151 (202)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333334444444333

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PLN02939 transferase, transferring glycosyl groups

Probab=82.06  E-value=1.6e+02  Score=37.69  Aligned_cols=19  Identities=26%  Similarity=0.184  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 002544          539 EEMKEKATKIEHAEQCLTT  557 (910)
Q Consensus       539 ~ei~~~~~kl~~~e~ei~~  557 (910)
                      .+-+.++.++..++-++.+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~  181 (977)
T PLN02939        163 TEKEALQGKINILEMRLSE  181 (977)
T ss_pred             HHHHHHHhhHHHHHHHhhh
Confidence            3444555555555544444

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=82.06  E-value=61  Score=34.81  Aligned_cols=32  Identities=16%  Similarity=0.230  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          583 TKELSEKLEAVNAKAQSFEREARIMEQDKVYL  614 (910)
Q Consensus       583 l~dL~~~le~~~~~~~~lEk~~~~Le~e~~el  614 (910)
                      |..|..++.+....++.-+.++..|..++..+
T Consensus        70 iRHLkakLkes~~~l~dRetEI~eLksQL~RM  101 (305)
T PF15290_consen   70 IRHLKAKLKESENRLHDRETEIDELKSQLARM  101 (305)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444443

>PRK11281 hypothetical protein; Provisional

Probab=81.38  E-value=1.9e+02  Score=37.99  Aligned_cols=13  Identities=8%  Similarity=0.148  Sum_probs=4.9

Q ss_pred             HHHHHHHHHHHHH
Q 002544          534 LAEKEEEMKEKAT  546 (910)
Q Consensus       534 ~~ele~ei~~~~~  546 (910)
                      +..++.+++.++.
T Consensus       236 ~~~~~~~~~~lq~  248 (1113)
T PRK11281        236 IQRLEHQLQLLQE  248 (1113)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []

Probab=81.08  E-value=2.7  Score=30.47  Aligned_cols=34  Identities=26%  Similarity=0.448  Sum_probs=27.2

Q ss_pred             hhHhhHHHHHHHHHhcCchhhhhhccCCChHHHHHHHHHh
Q 002544          866 YTKFTVQKLKQELTKHNFGAELLQLRNPNKKEILALYEKC  905 (910)
Q Consensus       866 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  905 (910)
                      |.+|||..||++|.++|.-      .+-+|.++++-...|
T Consensus         1 l~~l~v~eLk~~l~~~gL~------~~G~K~~Li~Rl~~~   34 (35)
T PF02037_consen    1 LSKLTVAELKEELKERGLS------TSGKKAELIERLKEH   34 (35)
T ss_dssp             TTTSHHHHHHHHHHHTTS-------STSSHHHHHHHHHHH
T ss_pred             CCcCcHHHHHHHHHHCCCC------CCCCHHHHHHHHHHh
Confidence            6789999999999999853      267788888876654

In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=81.04  E-value=37  Score=37.44  Aligned_cols=53  Identities=17%  Similarity=0.168  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          580 KLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERC  632 (910)
Q Consensus       580 ~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l  632 (910)
                      ...+.+++..+..+--.-..|..+...+..++.-|+..+++.+..+.++..++
T Consensus        83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~  135 (302)
T PF09738_consen   83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREY  135 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444433334444444444444444444333333333333333

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>COG5283 Phage-related tail protein [Function unknown]

Probab=80.48  E-value=1.9e+02  Score=37.48  Aligned_cols=14  Identities=43%  Similarity=0.567  Sum_probs=9.5

Q ss_pred             hccccccccccccc
Q 002544          798 SHGKRARADDYEAG  811 (910)
Q Consensus       798 ~~~~~~~~~~~~~~  811 (910)
                      .+|||+.+++...|
T Consensus       227 qlsk~~e~~~~~aG  240 (1213)
T COG5283         227 QLGKRLETDKAGAG  240 (1213)
T ss_pred             hhccccccchhhhh
Confidence            37889877775443

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=80.46  E-value=1.1e+02  Score=34.81  Aligned_cols=75  Identities=13%  Similarity=0.012  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544          543 EKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK  617 (910)
Q Consensus       543 ~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~  617 (910)
                      ..+.++..++.+...+...+-.+...++.+..........|+.+..++.........+-..++.+++++...++.
T Consensus       301 nlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqEL  375 (502)
T KOG0982|consen  301 NLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQEL  375 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            334444455555556666666666666666677777777777777776666666666666666666666666665

>PRK10884 SH3 domain-containing protein; Provisional

Probab=80.20  E-value=30  Score=36.06  Aligned_cols=19  Identities=21%  Similarity=0.447  Sum_probs=8.0

Q ss_pred             HHHhHHHHHHHHHHHHHHH
Q 002544          359 KYRSIEDNMKLLKKQLEDS  377 (910)
Q Consensus       359 e~~~le~e~e~l~k~lee~  377 (910)
                      .+..++.++..++..+.+.
T Consensus        94 rlp~le~el~~l~~~l~~~  112 (206)
T PRK10884         94 RVPDLENQVKTLTDKLNNI  112 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	910
1dg3_A	592	Structure Of Human Guanylate Binding Protein-1 In N		2e-26
2b8w_A	328	Crystal-Structure Of The N-Terminal Large Gtpase Do		2e-23

>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In Nucleotide Free Form Length = 592

Iteration: 1
 Score =  118 bits (295), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 125/472 (26%), Positives = 223/472 (47%), Gaps = 48/472 (10%)
Query: 2   FIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKT-----TPSELGQFSPIFVWLLRDF 56
           F+YN +G I++ A+D+L  VT++T  IR ++S  +        ++   F P FVW LRDF
Sbjct: 126 FVYNSIGTINQQAMDQLYYVTELTHRIRSKSSPDENENEVEDSADFVSFFPDFVWTLRDF 185
Query: 57  YLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNE 116
            LDL  D + +TP +YL  +L+  +G+ +     N  R  IR  FP ++CF   RP+ + 
Sbjct: 186 SLDLEADGQPLTPDEYLTYSLKLKKGTSQKDETFNLPRLCIRKFFPKKKCFVFDRPV-HR 244
Query: 117 NELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGITESYLDAI 175
            +L +L+++  + L PEF   +     ++F  ++ K + G   + GP L  +  +Y++AI
Sbjct: 245 RKLAQLEKLQDEELDPEFVQQVADFCSYIFSNSKTKTLSGGIQVNGPRLESLVLTYVNAI 304
Query: 176 NNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRSK--PPEEVA-LGEAHEAAVQKA 232
           ++G +P + ++  ++ + E   A   A   Y     +    P E +  L + H  + ++A
Sbjct: 305 SSGDLPCMENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREA 364
Query: 233 LAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDH-----KKNVYMEADIRCSSAIQ----S 283
           + V+      +  + K  + L QK      E       K+N    +D RCS  +Q     
Sbjct: 365 IEVF------IRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSD-RCSGLLQVIFSP 417
Query: 284 MERKLRAACHSSDASIDNVVKVLDGLISE-YETSCHGPGKWQKLATFL--QQSSEGPILD 340
           +E +++A  +S        V+ L  L  + YE    G    + L T+L  ++S    IL 
Sbjct: 418 LEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQ 477
Query: 341 LVKRLID---QIGSERSSLMLKYRSIEDNMKLL-------KKQLEDSERYKSEYLKRYDD 390
             + L +   +I  ER    +K  S + + K+L       ++ +E  ER   E+LK+  +
Sbjct: 478 TDQTLTEKEKEIEVER----VKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTE 533
Query: 391 AI-NDKKKLADDYTSRIN-NLQGENISLREKSSSLSKTVDSLKNEISDWKRK 440
            + ND+ +L  +    +   LQ +   L+E      K    +KNEI D + K
Sbjct: 534 KMENDRVQLLKEQERTLALKLQEQEQLLKE---GFQKESRIMKNEIQDLQTK 582

>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of Human Guanylate Binding Protein 1 (Hgbp1) In Complex With GmpALF4 Length = 328

Iteration: 1
 Score =  108 bits (269), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 108/191 (56%), Gaps = 7/191 (3%)
Query: 2   FIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKT-----TPSELGQFSPIFVWLLRDF 56
           F+YN +G I++ A+D+L  VT++T  IR ++S  +        ++   F P FVW LRDF
Sbjct: 137 FVYNSIGTINQQAMDQLYYVTELTHRIRSKSSPDENENEVEDSADFVSFFPDFVWTLRDF 196
Query: 57  YLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNE 116
            LDL  D + +TP +YL  +L+  +G+ +     N  R  IR  FP ++CF   RP+ + 
Sbjct: 197 SLDLEADGQPLTPDEYLTYSLKLKKGTSQKDETFNLPRLCIRKFFPKKKCFVFDRPV-HR 255
Query: 117 NELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGITESYLDAI 175
            +L +L+++  + L PEF   +     ++F  ++ K + G   + GP L  +  +Y++AI
Sbjct: 256 RKLAQLEKLQDEELDPEFVQQVADFCSYIFSNSKTKTLSGGIQVNGPRLESLVLTYVNAI 315
Query: 176 NNGAVPTISSS 186
           ++G +P + ++
Sbjct: 316 SSGDLPCMENA 326

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	910
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	7e-54
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	1e-40
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-22
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-20
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-15
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-12
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-04
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	4e-07
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	1e-05
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	7e-05
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	1e-04
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	7e-04
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	6e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	4e-05
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-04
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	5e-04
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	3e-05
2xs1_A	704	Programmed cell death 6-interacting protein; prote	3e-05
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	1e-04

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score =  197 bits (500), Expect = 7e-54
 Identities = 109/465 (23%), Positives = 208/465 (44%), Gaps = 26/465 (5%)

Query: 1   MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTT-----PSELGQFSPIFVWLLRD 55
            F+YN +G I++ A+D+L  VT++T  IR ++S  +        ++   F P FVW LRD
Sbjct: 125 TFVYNSIGTINQQAMDQLYYVTELTHRIRSKSSPDENENEVEDSADFVSFFPDFVWTLRD 184

Query: 56  FYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSN 115
           F LDL  D + +TP +YL  +L+  +G+ +     N  R  IR  FP ++CF   RP  +
Sbjct: 185 FSLDLEADGQPLTPDEYLTYSLKLKKGTSQKDETFNLPRLCIRKFFPKKKCFVFDRP-VH 243

Query: 116 ENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGITESYLDA 174
             +L +L+++  + L PEF   +     ++F  ++ K + G   + GP L  +  +Y++A
Sbjct: 244 RRKLAQLEKLQDEELDPEFVQQVADFCSYIFSNSKTKTLSGGIQVNGPRLESLVLTYVNA 303

Query: 175 INNGAVPTISSSWQSVEEAECRRAYDSATETY---MSTFDRSKPPEEVALGEAHEAAVQK 231
           I++G +P + ++  ++ + E   A   A   Y   M    +        L + H  + ++
Sbjct: 304 ISSGDLPCMENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSERE 363

Query: 232 ALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQ----SMERK 287
           A+ V+             ++  L     K  +D  K     +  RCS  +Q     +E +
Sbjct: 364 AIEVFI--RSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEE 421

Query: 288 LRAACHSSDASIDNVVKVLDGLISEY-ETSCHGPGKWQKLATFLQ--QSSEGPILDLVKR 344
           ++A  +S        V+ L  L  +Y E    G    + L T+L+  +S    IL   + 
Sbjct: 422 VKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQT 481

Query: 345 LIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTS 404
           L ++   E     +K  S + + K+L +    +E+   +  + Y + +    +  ++   
Sbjct: 482 LTEKE-KEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRV 540

Query: 405 RINNLQGENISLREKS------SSLSKTVDSLKNEISDWKRKYDQ 443
           ++   Q   ++L+ +           K    +KNEI D + K  +
Sbjct: 541 QLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRR 585

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* Length = 447

 Score =  154 bits (390), Expect = 1e-40
 Identities = 45/275 (16%), Positives = 93/275 (33%), Gaps = 21/275 (7%)

Query: 1   MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDL 60
           + +YN    + E  +  L L T+  +                 +     ++L+RD+    
Sbjct: 173 IQVYNLSQNVQEDDLQHLQLFTEYGRLAM---------EETFLKPFQSLIFLVRDWSFPY 223

Query: 61  VEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQ 120
                      +LE  L+       ++     +R  I + F +  CF L  P        
Sbjct: 224 EFSYGADGGAKFLEKRLKVSGNQHEEL---QNVRKHIHSCFTNISCFLLPHPGLKVATNP 280

Query: 121 RLDQISLDRLRPEFRAGLDALTKFVF--ERTRPKQVGATVLTGPVLIGITESYLDAINNG 178
             D   L  +  EF   L  L  ++   E    K++    +T   L+   ++Y+      
Sbjct: 281 NFDG-KLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGE 339

Query: 179 AVPTISSSWQSVEEAECRRAYDSATETYMSTFDRSKPPEEV-----ALGEAHEAAVQKAL 233
            +P   S  Q+  EA    A  +A +TY    +     ++       L   H    ++++
Sbjct: 340 ELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESV 399

Query: 234 AVYNAGA-VGVGLARKKYEGLLQKFFRKAFEDHKK 267
            ++     +G     ++Y   L+    + +  + K
Sbjct: 400 KLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIK 434

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score =  101 bits (253), Expect = 6e-22
 Identities = 62/326 (19%), Positives = 144/326 (44%), Gaps = 21/326 (6%)

Query: 483  AQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLR--EEFSSTLAEKEEE 540
             +EE++    +        + A  +   ++++ ++  +++  +    +  +   AE EE 
Sbjct: 855  QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEM 914

Query: 541  MKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSF 600
                A K +  E+ L  +   ++  E + +  + E    + +  +L E+LE   A  Q  
Sbjct: 915  RVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKL 974

Query: 601  EREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGK 660
            + E    +     +E       ++  ++ +  K+ E+     T     E  +A    K K
Sbjct: 975  QLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLK 1034

Query: 661  SEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEERE 720
            ++ E++  E    +++ ++  + LE+ K  L  E + + E   E  +++A L+A++ ++E
Sbjct: 1035 NKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKE 1094

Query: 721  KEIESL---LESNNEQRASTVKKLEDL----------LESERRSRAAANAMAERLSLEVQ 767
            +E+++    LE    Q+ + +KK+ +L          LESE+ +R  A      LS E++
Sbjct: 1095 EELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELE 1154

Query: 768  SAQAKLDE------MQQELTKARLNE 787
            + + +L++       QQEL  +   +
Sbjct: 1155 ALKTELEDTLDTTATQQELRGSDYKD 1180

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 94.9 bits (236), Expect = 5e-20
 Identities = 54/338 (15%), Positives = 129/338 (38%), Gaps = 9/338 (2%)

Query: 387  RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLT 446
            R ++ +  K +       R    + E   L +K + L +  + L+ ++      Y +   
Sbjct: 854  RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEE 913

Query: 447  KQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALE 506
             +  +  +     + L+      EAR+    E++   Q E    K+K    + + +  LE
Sbjct: 914  MRVRLAAKK----QELEEILHEMEARIEEEEERSQQLQAE----KKKMQQQMLDLEEQLE 965

Query: 507  KAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAE 566
            +    +++   E    +  +++     +   E++  +   + +  E+ ++ L   L   E
Sbjct: 966  EEEAARQKLQLEKVTADGKIKKMEDD-ILIMEDQNNKLTKERKLLEERVSDLTTNLAEEE 1024

Query: 567  SKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFE 626
             K ++     +  +    EL  +L+      Q  E+  R +E +   L ++      +  
Sbjct: 1025 EKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIA 1084

Query: 627  EVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLER 686
            E++ +    E+E + A    + E ++   A K   E E+   +    +E  +      E+
Sbjct: 1085 ELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEK 1144

Query: 687  QKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIE 724
            QK DL+ E+  ++    + L   A  +       K+ +
Sbjct: 1145 QKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 78.7 bits (194), Expect = 6e-15
 Identities = 39/332 (11%), Positives = 121/332 (36%), Gaps = 19/332 (5%)

Query: 342  VKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLE---DSERYKSEYLKRYDDAINDKKKL 398
             K    +  +E   L  K+  + +   LL+++L+   +      E   R      + +++
Sbjct: 869  TKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEI 928

Query: 399  ADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSE 458
              +  +RI   +  +  L+ +   + + +  L+ ++ + +        K +  +     +
Sbjct: 929  LHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA----RQKLQLEKVTADGK 984

Query: 459  IEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKE 518
            I+ ++      E +     ++    +E V +          E    L K     E    E
Sbjct: 985  IKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNL-AEEEEKAKNLTKLKNKHESMISE 1043

Query: 519  MQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISS 578
            ++ R           L ++E+  +E        E   + L  ++   ++++   + +++ 
Sbjct: 1044 LEVR-----------LKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAK 1092

Query: 579  QKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKE 638
            ++ E +    +LE   ++  +  ++ R +E     L++  +SE     + +++ +   +E
Sbjct: 1093 KEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEE 1152

Query: 639  AKKATELADRERAEAAAARKGKSEFENLAMER 670
             +      +      A  ++ +        ++
Sbjct: 1153 LEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 72.2 bits (177), Expect = 6e-13
 Identities = 47/327 (14%), Positives = 113/327 (34%), Gaps = 14/327 (4%)

Query: 514  RTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYE 573
            R  +EMQ +++ L+        + E E+KE   K     +    L+ +L+A        E
Sbjct: 854  RQEEEMQAKDEELQRTKER-QQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAE 912

Query: 574  VEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCK 633
                    + +EL E L  + A+ +  E  ++ ++ +K  ++Q+     E+ EE +   +
Sbjct: 913  EMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQ 972

Query: 634  VAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTN 693
              + E   A     +   +        ++           +  +   +   E +  +LT 
Sbjct: 973  KLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTK 1032

Query: 694  EVNRIRESELEALSKVALLEARVEEREKEIESL-------------LESNNEQRASTVKK 740
              N+      E   ++   E   +E EK    L             L++   +  + + K
Sbjct: 1033 LKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAK 1092

Query: 741  LEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAVSHG 800
             E+ L++         +       +++  ++ + ++Q++L   +        + R +S  
Sbjct: 1093 KEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEE 1152

Query: 801  KRARADDYEAGVGSVQEMDTNDKVLRA 827
              A   + E  + +             
Sbjct: 1153 LEALKTELEDTLDTTATQQELRGSDYK 1179

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 80.7 bits (198), Expect = 1e-15
 Identities = 104/740 (14%), Positives = 209/740 (28%), Gaps = 226/740 (30%)

Query: 57  YLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNE 116
           ++D      +   +D L +          +   K +++D  +++    E   ++      
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFV---DNFDCK-DVQDMPKSILSKEEIDHIIMSKDAV 61

Query: 117 NELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVGATVLTGPVLIGITESYLDAIN 176
           +   RL       L        + + KFV E  R                   +Y     
Sbjct: 62  SGTLRL----FWTLL---SKQEEMVQKFVEEVLRI------------------NY----- 91

Query: 177 NGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVY 236
                 + S  +     E R+     T  Y+   DR                      +Y
Sbjct: 92  ----KFLMSPIK----TEQRQPSMM-TRMYIEQRDR----------------------LY 120

Query: 237 NAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSD 296
           N                 Q F        K NV           ++    +LR A     
Sbjct: 121 NDN---------------QVF-------AKYNVSRLQPYL---KLRQALLELRPA----- 150

Query: 297 ASIDNVVKVLDG--------LISE----YETSCHGPGK--WQKLATFLQQSSEGPILDLV 342
               NV  ++DG        +  +    Y+  C    K  W  L      +S   +L+++
Sbjct: 151 ---KNV--LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK---NCNSPETVLEML 202

Query: 343 KRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYL--KRY-------DDAIN 393
           ++L+ QI          + S  D+   +K ++   +      L  K Y        + + 
Sbjct: 203 QKLLYQIDPN-------WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-VQ 254

Query: 394 DKKKL-ADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAME 452
           + K   A + + +I  L    ++ R K  +   +  +  +   D    +   LT  +   
Sbjct: 255 NAKAWNAFNLSCKI--L----LTTRFKQVTDFLSAATTTHISLD---HHSMTLTPDEVKS 305

Query: 453 DQVCSEIEVLKSRSTAAEARLAAAREQALSA---QEEVEEWKR-KYGVAVREAKAALEKA 508
             +  +    + +    E      R  ++ A   ++ +  W   K+ V   +    +E +
Sbjct: 306 --LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH-VNCDKLTTIIESS 362

Query: 509 AIVQERTSKEMQQR-ED--VLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAA 565
             V E    E ++  +   V                      I      L+ +  ++   
Sbjct: 363 LNVLE--PAEYRKMFDRLSVFPPS----------------AHIP--TILLSLIWFDVI-- 400

Query: 566 ESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSE---- 621
                  +V +   KL    L EK        Q  E    I     +YLE K K E    
Sbjct: 401 -----KSDVMVVVNKLHKYSLVEK--------QPKESTISIPS---IYLELKVKLENEYA 444

Query: 622 -----FERFEEVQERCKVAEKEAKKATE----------LADRERAEAAAARKGKSEFENL 666
                 + +   +      +       +          L + E  E        + F  +
Sbjct: 445 LHRSIVDHYNIPKTFDS--DDLIPPYLDQYFYSHIGHHLKNIEHPERM------TLFRMV 496

Query: 667 AMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESL 726
            ++    +E+  R   +       + N + +++  +      +   + + E     I   
Sbjct: 497 FLD-FRFLEQKIRHDSTAWNASGSILNTLQQLKFYK----PYICDNDPKYERLVNAILDF 551

Query: 727 LESNNEQRASTVKKLEDLLE 746
           L    E    +  K  DLL 
Sbjct: 552 LPKIEENLICS--KYTDLLR 569

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 71.8 bits (175), Expect = 7e-13
 Identities = 84/679 (12%), Positives = 194/679 (28%), Gaps = 218/679 (32%)

Query: 340 DLVKRLIDQIGSERSSLMLKYRSIEDNMK--LLKKQLED--SERYKSEYLKRYDDAINDK 395
           D++    D             + ++D  K  L K++++     +       R    +  K
Sbjct: 20  DILSVFEDAFVDN-----FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74

Query: 396 KK----------LADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVL 445
           ++          L  +Y   ++ ++ E       +    +  D L N+         QV 
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN--------QVF 126

Query: 446 TKQKAMEDQVCSEIEVLKSRSTAAEAR-----------------LAAAREQALSAQEEVE 488
            K       V      LK R    E R                 +A        +  +V+
Sbjct: 127 AK-----YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL---DVCLS-YKVQ 177

Query: 489 EWKRKYGVA------VREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMK 542
             K  + +           +  LE    +  +       R D      SS +  +   ++
Sbjct: 178 C-KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD-----HSSNIKLRIHSIQ 231

Query: 543 EKATKIEHAEQ---CLTTLR-----LELKAAESKMRSYEVEISSQKLET---KELSEKLE 591
            +  ++  ++    CL  L          A           +S + L T   K++++ L 
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNA---------FNLSCKILLTTRFKQVTDFLS 282

Query: 592 AVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAE--KEAKKATELADRE 649
           A             +          + KS   ++ +    C+  +  +E           
Sbjct: 283 AATTT------HISLDHHSMTLTPDEVKSLLLKYLD----CRPQDLPREVLTTNPRR--- 329

Query: 650 RAEAAAARKGKSEFENLAMERMAVI-ERVQRQIESLERQKTDLTNEVNRIRESELEAL-- 706
                                +++I E ++  + + +  K    +++  I ES L  L  
Sbjct: 330 ---------------------LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368

Query: 707 --------------------SKV-ALLEARVEEREKEI-------ESLLESNNEQRASTV 738
                               + + +L+   V + +  +        SL+E   ++   ++
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428

Query: 739 KKLEDLLESERRSRAAANA-MAERLSLEVQS----------------------AQAKLDE 775
             +   L+ +  +  A +  + +  ++                             +  E
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488

Query: 776 MQQELTKARLNETALGSKLRAVSHGKRARADDYEAGVGSVQEMDT-NDKVLRANKRSRST 834
                    L+   L  K+R  S    A         GS+  ++T     L+        
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNAS--------GSI--LNTLQQ--LK-------- 528

Query: 835 TSPLKYTQPEDGGSVFRGDDDNLSQQSNQEDYTKFTVQKLKQELTKHNFGAELLQ--LRN 892
                Y         +  D+D   ++        F + K+++ L    +  +LL+  L  
Sbjct: 529 ----FYKP-------YICDNDPKYERL-VNAILDF-LPKIEENLICSKY-TDLLRIALMA 574

Query: 893 PNKKEILALYEKC--ILQK 909
            ++    A++E+    +Q+
Sbjct: 575 EDE----AIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 3e-06
 Identities = 52/309 (16%), Positives = 98/309 (31%), Gaps = 69/309 (22%)

Query: 621 EFERFEEVQERCK----VAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIER 676
           +FE   E Q + K    V E       +  D +    +   K   E +++ M +   +  
Sbjct: 8   DFE-TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK--EEIDHIIMSK-DAVSG 63

Query: 677 VQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRAS 736
             R   +L  ++      V +  E  L        L + ++  +++   +     EQR  
Sbjct: 64  TLRLFWTLLSKQE---EMVQKFVEEVLRI--NYKFLMSPIKTEQRQPSMMTRMYIEQR-- 116

Query: 737 TVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRA 796
                 D L ++ +  A  N         V   Q    +++Q L + R  +         
Sbjct: 117 ------DRLYNDNQVFAKYN---------VSRLQ-PYLKLRQALLELRPAK-------NV 153

Query: 797 VSHGKRARADDYEAGVG-SVQEMDT--NDKVLRAN---------KRSRSTTSPLKYTQPE 844
           +  G          G G +   +D   + KV             K   S  + L+  Q  
Sbjct: 154 LIDGV--------LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ-- 203

Query: 845 DGGSVFRGDDDNLSQQSNQEDYTKFTVQKLKQELTK----HNFGAELLQLRNPNKKEILA 900
               +    D N + +S+     K  +  ++ EL +      +   LL L N    +   
Sbjct: 204 ---KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260

Query: 901 LYE-KC-IL 907
            +   C IL
Sbjct: 261 AFNLSCKIL 269

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 71.3 bits (175), Expect = 1e-12
 Identities = 44/259 (16%), Positives = 89/259 (34%), Gaps = 19/259 (7%)

Query: 478  EQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEK 537
            +    A   ++   R Y V  +      E  +I+ ++  +    R    R   +    + 
Sbjct: 836  QCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQC 895

Query: 538  EEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEI-SSQKLETK--ELSEKLEAVN 594
                                 + ELK  + + RS E        LE K  +L  K++  N
Sbjct: 896  CYRRMMA--------------KRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQN 941

Query: 595  AKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAA 654
             + +S   +   +E       +K +S+ ER    +E  K A        E   + R E  
Sbjct: 942  KEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELH 1001

Query: 655  AARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEA 714
              +  K   E  A +     E++  +++           E+NR    + + +++   +E 
Sbjct: 1002 QTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITE--TMEK 1059

Query: 715  RVEEREKEIESLLESNNEQ 733
            ++ E  K++E  L     +
Sbjct: 1060 KLVEETKQLELDLNDERLR 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 67.1 bits (164), Expect = 2e-11
 Identities = 40/312 (12%), Positives = 108/312 (34%), Gaps = 31/312 (9%)

Query: 477  REQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAE 536
            R  A++ Q     + R +            +AAI+ ++  +    R+       ++   +
Sbjct: 791  RRAAITIQR----YVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQ 846

Query: 537  KEEEMKEKATKIEHAEQCLTTLRLELKAA---ESKMRSYEVEISSQKLETKELSEKLEAV 593
                      K +          L    +   +  +R +   +   +     +  +    
Sbjct: 847  ALLRGYLVRNKYQM--------MLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYR 898

Query: 594  NAKAQSFEREARIMEQDKVYLEQKYKSEFE-RFEEVQERCKVAEKEAKKATE-LADRERA 651
               A+   ++ + +E   V   +K     E +  ++Q +     KE K   E + + E  
Sbjct: 899  RMMAKRELKKLK-IEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEIT 957

Query: 652  EAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVAL 711
             +    K +S+ E L           + + ++   +   L  E+ ++R+   +  ++   
Sbjct: 958  YSTETEKLRSDVERL--------RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009

Query: 712  LEARVEEREKEIESL---LESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQS 768
            +E   ++ + E E L   L+  N    +  ++L   +  +  ++     M ++L  E + 
Sbjct: 1010 IEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ--AKEITETMEKKLVEETKQ 1067

Query: 769  AQAKLDEMQQEL 780
             +  L++ +   
Sbjct: 1068 LELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 54.7 bits (132), Expect = 1e-07
 Identities = 25/218 (11%), Positives = 81/218 (37%), Gaps = 14/218 (6%)

Query: 440  KYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVR 499
            K+ +    +      + + + +           +A    + L  +    E  +K  + + 
Sbjct: 872  KHVRGWLARVHYHRTLKAIVYLQC----CYRRMMAKRELKKLKIEARSVERYKKLHIGLE 927

Query: 500  EAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLR 559
                 L++    Q +  K + ++ + L        + + E+++    ++  +E+      
Sbjct: 928  NKIMQLQRKIDEQNKEYKSLLEKMNNLEIT----YSTETEKLRSDVERLRMSEEEAKNAT 983

Query: 560  LELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSF----EREARIMEQDKVYLE 615
              + + + ++     E+   + E K + E  +    + +      + +  +++ +K  L 
Sbjct: 984  NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043

Query: 616  QKYKSEFERFEEVQERCKVAEKEAKKATELAD-RERAE 652
            ++   + +   E  E+ K+ E+  +   +L D R R +
Sbjct: 1044 RRIHDQAKEITETMEK-KLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 50.1 bits (120), Expect = 4e-06
 Identities = 25/164 (15%), Positives = 66/164 (40%), Gaps = 8/164 (4%)

Query: 339  LDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKL 398
            ++  K+L   + ++   L  K        K L +++ + E   S   ++    +   +  
Sbjct: 916  VERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMS 975

Query: 399  ADD---YTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQV 455
             ++    T+R+ +LQ E   LR++         +++     +K + +Q++++ K     +
Sbjct: 976  EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLL 1035

Query: 456  CSEIEVLKSRSTAAEARLAAAREQALSAQE-----EVEEWKRKY 494
             +E E L  R       +    E+ L  +      ++ + + +Y
Sbjct: 1036 KTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 21/164 (12%), Positives = 49/164 (29%), Gaps = 8/164 (4%)

Query: 633 KVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLT 692
           K  +        L    R      +      E+ ++     + R         R    + 
Sbjct: 833 KRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHV-RGWLARVHYHRTLKAIV 891

Query: 693 NEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSR 752
                 R    +   K   +EAR  ER K++   LE+        + +L+  ++ + +  
Sbjct: 892 YLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENK-------IMQLQRKIDEQNKEY 944

Query: 753 AAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRA 796
            +       L +   +   KL    + L  +        +++ +
Sbjct: 945 KSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLS 988

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 52.9 bits (126), Expect = 4e-07
 Identities = 42/292 (14%), Positives = 93/292 (31%), Gaps = 38/292 (13%)

Query: 474 AAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSST 533
            A+R +   A    +++ +     +R A    E +       +   + R+  +  +    
Sbjct: 575 IASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLV 634

Query: 534 LAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAV 593
           ++  + +  E   +               + A  +     +EI++   E     E     
Sbjct: 635 VSSVDVQSVEPVDQ-------------RTRDALQRSVQLAIEITTNSQEAAAKHEAQRLE 681

Query: 594 NAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEA 653
                  ER+          +  + ++E  R E ++     A   A ++T  A  E    
Sbjct: 682 QEARGRLERQK---------ILDQSEAEKARKELLELE---AMSMAVESTGNAKAEAESR 729

Query: 654 AAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLE 713
           A A + + E   L  +  A    ++ + E LER K        ++RE EL        LE
Sbjct: 730 AEAARIEGEGSVLQAKLKAQALAIETEAE-LERVK--------KVREMELIYARAQLELE 780

Query: 714 ARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLE 765
               ++   +    E+   +  +       + +           + + L L+
Sbjct: 781 VSKAQQLANV----EAKKFKEMTEALGPGTIRDLAVAGPEMQVKLLQSLGLK 828

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 48.7 bits (115), Expect = 1e-05
 Identities = 44/242 (18%), Positives = 76/242 (31%), Gaps = 23/242 (9%)

Query: 542 KEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFE 601
            E +         L   R +    ++ +    V++ S +   +   + L+     A    
Sbjct: 606 FEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAI--- 662

Query: 602 REARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKS 661
                 E      E   K E +R E  QE     E++       A++ R E         
Sbjct: 663 ------EITTNSQEAAAKHEAQRLE--QEARGRLERQKILDQSEAEKARKELLELEA--- 711

Query: 662 EFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREK 721
                    MAV      + E+  R +         + +++L+A +     EA +E  +K
Sbjct: 712 -------MSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKK 764

Query: 722 EIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELT 781
             E  L     Q    V K + L   E   +      A         A A   EMQ +L 
Sbjct: 765 VREMELIYARAQLELEVSKAQQLANVE-AKKFKEMTEALGPGTIRDLAVAG-PEMQVKLL 822

Query: 782 KA 783
           ++
Sbjct: 823 QS 824

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 45.6 bits (107), Expect = 7e-05
 Identities = 28/193 (14%), Positives = 58/193 (30%), Gaps = 12/193 (6%)

Query: 467 TAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVL 526
              + R   A ++++    E+           +EA A  E   + QE   +  +Q+    
Sbjct: 644 EPVDQRTRDALQRSVQLAIEITT-------NSQEAAAKHEAQRLEQEARGRLERQKILDQ 696

Query: 527 REEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKEL 586
            E       +  +E+ E        E            AE+     E  +   KL+ + L
Sbjct: 697 SEA-----EKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQAL 751

Query: 587 SEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELA 646
           + + EA   + +       I  + ++ LE     +    E  + +            +LA
Sbjct: 752 AIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLA 811

Query: 647 DRERAEAAAARKG 659
                      + 
Sbjct: 812 VAGPEMQVKLLQS 824

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 44.8 bits (105), Expect = 1e-04
 Identities = 27/207 (13%), Positives = 66/207 (31%), Gaps = 5/207 (2%)

Query: 458 EIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSK 517
           +++ ++         L  + + A+      +E   K+     E +A            S+
Sbjct: 639 DVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSE 698

Query: 518 EMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEIS 577
             + R+++L  E  S   E     K +A     A +      +     +++  + E E  
Sbjct: 699 AEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAE 758

Query: 578 SQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEK 637
            ++++     E + A         +  ++   +     +K+K   E       R  +A  
Sbjct: 759 LERVKKVREMELIYARAQLELEVSKAQQLANVEA----KKFKEMTEALGPGTIR-DLAVA 813

Query: 638 EAKKATELADRERAEAAAARKGKSEFE 664
             +   +L      ++     G S   
Sbjct: 814 GPEMQVKLLQSLGLKSTLITDGSSPIN 840

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 42.5 bits (99), Expect = 7e-04
 Identities = 32/192 (16%), Positives = 59/192 (30%), Gaps = 14/192 (7%)

Query: 426 TVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQE 485
           +VD    E  D + +     + Q A+E    S+    K  +   E       E+     +
Sbjct: 637 SVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQ 696

Query: 486 EVEEWKRKYGVAVREAKAALEKAAIVQ---------ERTSKEMQQREDVLREEFSSTLAE 536
              E  RK  + +     A+E     +          R   E    +  L+ +  +   E
Sbjct: 697 SEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETE 756

Query: 537 KEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAK 596
            E E  +K  ++E                    +   VE    K  T+ L        A 
Sbjct: 757 AELERVKKVREMELIYA----RAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAV 812

Query: 597 AQSFEREARIME 608
           A   E + ++++
Sbjct: 813 AGP-EMQVKLLQ 823

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 48.1 bits (114), Expect = 6e-06
 Identities = 47/271 (17%), Positives = 101/271 (37%), Gaps = 2/271 (0%)

Query: 458 EIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSK 517
           + E    R+  AEA   AA +++   ++E+   ++K      E     E     QE+   
Sbjct: 14  DKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLEL 73

Query: 518 EMQQREDVLREEFSST--LAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVE 575
             ++  D   +  S    +   EEE+     ++  A Q L         +E  M+  E  
Sbjct: 74  AEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESR 133

Query: 576 ISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVA 635
               + + +    +L+     A+  +R+   + +  V +E   +   ER E  + +C   
Sbjct: 134 AQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAEL 193

Query: 636 EKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEV 695
           E+E K  T       A+A    + + ++E         ++  + + E  ER  T L   +
Sbjct: 194 EEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSI 253

Query: 696 NRIRESELEALSKVALLEARVEEREKEIESL 726
           + + +       K   +   ++    ++ S+
Sbjct: 254 DDLEDELYAQKLKYKAISEELDHALNDMTSI 284

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 45.4 bits (107), Expect = 4e-05
 Identities = 53/263 (20%), Positives = 101/263 (38%), Gaps = 1/263 (0%)

Query: 534 LAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAV 593
                +   E     + AE     L  EL + + K+++ E E+       K+  EKLE  
Sbjct: 15  KENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELA 74

Query: 594 NAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEA 653
             KA   E +   + +     E++     ER     ++ + AEK A ++        + A
Sbjct: 75  EKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRA 134

Query: 654 AAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLE 713
               +     E    E   + E   R+ E + R+   + +++ R  E    +  K A LE
Sbjct: 135 QKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELE 194

Query: 714 ARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKL 773
             ++     ++SL E+  E+ +    K E+ ++        A   AE     V   +  +
Sbjct: 195 EEIKTVTNNLKSL-EAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSI 253

Query: 774 DEMQQELTKARLNETALGSKLRA 796
           D+++ EL   +L   A+  +L  
Sbjct: 254 DDLEDELYAQKLKYKAISEELDH 276

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 46/281 (16%), Positives = 108/281 (38%), Gaps = 2/281 (0%)

Query: 482 SAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLRE--EFSSTLAEKEE 539
           + +++++  K     A+  A  A       ++R+ +   +   + ++       L +  E
Sbjct: 3   AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSE 62

Query: 540 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQS 599
            +K+   K+E AE+  T    ++ +   +++ +E E+   +       +KLE     A  
Sbjct: 63  ALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADE 122

Query: 600 FEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKG 659
            ER  +++E      E+K + +  + +E +   + A+++ ++         ++   A + 
Sbjct: 123 SERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEER 182

Query: 660 KSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEER 719
               E    E    I+ V   ++SLE Q    + + ++  E       K+   E R E  
Sbjct: 183 AELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFA 242

Query: 720 EKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAE 760
           E+ +  L +S ++       +             A N M  
Sbjct: 243 ERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS 283

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 67/284 (23%), Positives = 120/284 (42%), Gaps = 16/284 (5%)

Query: 367 MKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKT 426
           M  +KK+++  +  K   L R D+A  DKK   D    R   L+ E +SL++K  +    
Sbjct: 1   MDAIKKKMQMLKLDKENALDRADEAEADKKAAED----RSKQLEDELVSLQKKLKATEDE 56

Query: 427 VDSLKNEISDWKRKYDQVLTKQKAMEDQVCS---EIEVLKSRSTAAEARLAAAREQALSA 483
           +D     + D + K +    K    E  V S    I++ +     A+ RLA A ++   A
Sbjct: 57  LDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEA 116

Query: 484 QEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLRE---------EFSSTL 534
           ++  +E +R   V    A+   EK  I + +  +     ED  R+            S L
Sbjct: 117 EKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDL 176

Query: 535 AEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVN 594
              EE  +    K    E+ + T+   LK+ E++   Y  +    + E K LS+KL+   
Sbjct: 177 ERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAE 236

Query: 595 AKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKE 638
            +A+  ER    +E+    LE +  ++  +++ + E    A  +
Sbjct: 237 TRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALND 280

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 47.2 bits (112), Expect = 3e-05
 Identities = 26/196 (13%), Positives = 56/196 (28%), Gaps = 12/196 (6%)

Query: 375  EDSERYKSEYL-------KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTV 427
            E + R             + Y D IN    L ++   ++   Q       +K       V
Sbjct: 1877 EANIRLLKRQGRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQV 1936

Query: 428  DSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEV 487
              L+  ++   R+ D    +      Q+  + +  + +   A         +      + 
Sbjct: 1937 KDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQK 1996

Query: 488  EEWKRKYGVAV-----REAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMK 542
             +       A      RE    LE AA   +    E+      L +  ++   E    ++
Sbjct: 1997 VKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIR 2056

Query: 543  EKATKIEHAEQCLTTL 558
            E       + +    +
Sbjct: 2057 ETEQIKTESSKVKNKV 2072

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score = 46.9 bits (110), Expect = 3e-05
 Identities = 41/327 (12%), Positives = 104/327 (31%), Gaps = 8/327 (2%)

Query: 370 LKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDS 429
           L  +     R  +        ++N    + D     +            +   +      
Sbjct: 383 LVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQL 442

Query: 430 LKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEE 489
           +K E+ +  ++  ++L +   + D+  +    L+++      R  +  E     + E   
Sbjct: 443 IK-ELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSN-ELYKPLRAEGTN 500

Query: 490 WKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIE 549
           ++     A  +A   +++       T   + + E  L     S    K  +  E    ++
Sbjct: 501 FRTVLDKA-VQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLK 559

Query: 550 HAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQ 609
                L  ++ E +  E+ ++S   +++S+ L       +   +N +A S     R+   
Sbjct: 560 SLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALA---QDGVINEEALSVTELDRVYGG 616

Query: 610 DKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEA--AAARKGKSEFENLA 667
               +++  K +    + +Q   +   K  +   E   RE      A A     E     
Sbjct: 617 LTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANL 676

Query: 668 MERMAVIERVQRQIESLERQKTDLTNE 694
            E       +   +   + + +D+   
Sbjct: 677 KEGTKFYNELTEILVRFQNKCSDIVFA 703

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 25/237 (10%), Positives = 63/237 (26%), Gaps = 25/237 (10%)

Query: 472 RLAAAREQALSAQEEVEEWK--RKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREE 529
                 +   S Q  +   K  +K     +  + +  +A     +T   + +RE  +   
Sbjct: 782 ESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAP- 840

Query: 530 FSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEK 589
                     E+    + +E AEQ        L+    + +   V +       K+L   
Sbjct: 841 ----AGLTPNEIDSTWSALEKAEQ---EHAEALRIELKRQKKIAVLLQKYNRILKKLENW 893

Query: 590 LEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRE 649
                       +   +   +        +++ +  E     C+ + +    +  L+   
Sbjct: 894 AT---------TKSVYLGSNETGDSITAVQAKLKNLEAFDGECQ-SLEGQSNSDLLSILA 943

Query: 650 RAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEAL 706
           +             E            V+   E+ +         +      ++E L
Sbjct: 944 QLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQ-----KIEDL 995

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	910
d1f5na2	277	c.37.1.8 (A:7-283) Interferon-induced guanylate-bi	8e-36
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	4e-11

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (340), Expect = 8e-36
 Identities = 51/159 (32%), Positives = 85/159 (53%), Gaps = 6/159 (3%)

Query: 1   MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRAS-----GGKTTPSELGQFSPIFVWLLRD 55
            F+YN +G I++ A+D+L  VT++T  IR ++S           ++   F P FVW LRD
Sbjct: 119 TFVYNSIGTINQQAMDQLYYVTELTHRIRSKSSPDENENEVEDSADFVSFFPDFVWTLRD 178

Query: 56  FYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSN 115
           F LDL  D + +TP +YL  +L+  +G+ +     N  R  IR  FP ++CF   RP+  
Sbjct: 179 FSLDLEADGQPLTPDEYLTYSLKLKKGTSQKDETFNLPRLCIRKFFPKKKCFVFDRPVHR 238

Query: 116 ENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV 154
              L +L+++  + L PEF   +     ++F  ++ K +
Sbjct: 239 RK-LAQLEKLQDEELDPEFVQQVADFCSYIFSNSKTKTL 276

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (152), Expect = 4e-11
 Identities = 41/252 (16%), Positives = 96/252 (38%), Gaps = 11/252 (4%)

Query: 155 GATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFD--- 211
           G   + GP L  +  +Y++AI++G +P + ++  ++ + E   A   A   Y        
Sbjct: 1   GGIQVNGPRLESLVLTYVNAISSGDLPCMENAVLALAQIENSAAVQKAIAHYEQQMGQKV 60

Query: 212 RSKPPEEVALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYM 271
           +        L + H  + ++A+ V+             ++  L     K  +D  K    
Sbjct: 61  QLPTESLQELLDLHRDSEREAIEVFI--RSSFKDVDHLFQKELAAQLEKKRDDFCKQNQE 118

Query: 272 EADIRCSSAIQ----SMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLA 327
            +  RCS  +Q     +E +++A  +S        V+ L  L  +Y        + +++ 
Sbjct: 119 ASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEIL 178

Query: 328 TFLQQSSEGPILDLVKR--LIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYL 385
               +S E     +++    + +   E     +K  S + + K+L +    +E+   +  
Sbjct: 179 QTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKE 238

Query: 386 KRYDDAINDKKK 397
           + Y + +    +
Sbjct: 239 RSYQEHLKQLTE 250

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	910
d1f5na1	300	Interferon-induced guanylate-binding protein 1 (GB	100.0
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	99.96

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-28  Score=222.21  Aligned_cols=223  Identities=21%  Similarity=0.282  Sum_probs=172.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCC-CHHHHHHHHHHHHHH
Q ss_conf             99235718899999999999619998896423889999999999999999999633548--999-858899999999999
Q 002544          155 GATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRS--KPP-EEVALGEAHEAAVQK  231 (910)
Q Consensus       155 ~G~~ltg~~l~~l~~~yv~ain~g~vP~i~s~~~~~~~~e~~~a~~~A~~~Y~~~m~~~--~~~-~e~~L~~~H~~~~~~  231 (910)
                      ||.+||||+|+.|+.+||+|||+|+||||.|+|.++++++|.+|++.|+..|...|...  .|| +...|...|..|...
T Consensus         1 gg~~~~g~~l~~l~~~yv~ain~g~~P~i~~~~~~~~~~e~~~a~e~a~~~Y~~~m~~~~~~~~~~~eel~~~h~~~~~~   80 (300)
T d1f5na1           1 GGIQVNGPRLESLVLTYVNAISSGDLPCMENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSERE   80 (300)
T ss_dssp             TTEECBHHHHHHHHHHHHHHHHHTSCCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             98210079999999999998728999982689999999999999999999999999875389987999999999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             9998430267880236999999999999999999999999999999999999----999999631589850688999999
Q 002544          232 ALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQS----MERKLRAACHSSDASIDNVVKVLD  307 (910)
Q Consensus       232 Al~~F~~~~~g~~~~~~~~~~~L~~~l~~~~~~~~~~n~~~s~~~C~~ll~~----l~~~l~~~~~~~~~~~~~~~~~~~  307 (910)
                      |+.+|...+||  +....|...|...+...+..|++.|...|...|..++..    +..++....+.+++++..+...++
T Consensus        81 a~~~f~~~~~~--~~~~~~~~~L~~~l~~~~~~~~~~Ne~~s~~~c~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  158 (300)
T d1f5na1          81 AIEVFIRSSFK--DVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQ  158 (300)
T ss_dssp             HHHHHHHHCCC--CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHHH
T ss_pred             HHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             99999986331--5579999999999999999999998999999999999999779999987266447732999999999


Q ss_pred             HHHHHHHHCC-CCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999953136-888749999999967--523379999999898777889899987773788899999999999998
Q 002544          308 GLISEYETSC-HGPGKWQKLATFLQQ--SSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERY  380 (910)
Q Consensus       308 ~~~~~Y~~~~-~Gp~K~~~L~~fl~~--~~~~~il~~~~~l~~~~eke~~~L~~e~~~le~e~e~l~kqlee~e~~  380 (910)
                      .+...|...+ +++....++..|++.  .+...++..+..+ ..........+............+.......+..
T Consensus       159 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  233 (300)
T d1f5na1         159 DLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTL-TEKEKEIEVERVKAESAQASAKMLHEMQRKNEQM  233 (300)
T ss_dssp             HHHHHHHHSSCCCTTHHHHHHHHHHHTHHHHHHHHHHCSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999998665557899999999987899999999999886-6379999999889999999999999999999999

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.3e-29  Score=226.08  Aligned_cols=154  Identities=33%  Similarity=0.658  Sum_probs=139.9

Q ss_pred             CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-----CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHH
Q ss_conf             91315999999776545466875334577532589-----8898842478981688762354323212546790579998
Q 002544            1 MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGG-----KTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEI   75 (910)
Q Consensus         1 ~~IYNs~g~Ide~al~~L~l~tel~~~i~~~~~~~-----~~~~~~~~~~fP~f~WlvRDf~l~l~~~G~~it~~eyLe~   75 (910)
                      ++|||++++|++.++++|+++++++..+.++.+..     ..+..+++.|||+|+|+||||++++..+|..+|+++||+.
T Consensus       119 ~~i~N~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~vvRD~~~~~~~~~~~~t~~eyLe~  198 (277)
T d1f5na2         119 TFVYNSIGTINQQAMDQLYYVTELTHRIRSKSSPDENENEVEDSADFVSFFPDFVWTLRDFSLDLEADGQPLTPDEYLTY  198 (277)
T ss_dssp             EEEEEEESCSSHHHHHTTHHHHTHHHHCBSCCC-------CCGGGGHHHHCCEEEEEEETCCCCCCCSSSCCCHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHH
T ss_conf             79993215576899999899999999999863232111343441111266883599842132212246774668899999


Q ss_pred             HHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             51678899845633118899998248999513126899891540000289857885779999999999973248876559
Q 002544           76 ALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVG  155 (910)
Q Consensus        76 ~L~~~~g~~~~~~~~n~~R~~i~~~F~~~~cf~l~~P~~~~~~l~~l~~~~~~~L~peF~~~~~~l~~~i~~~~~pK~i~  155 (910)
                      +|+..++.+..+...|.+|++|++||+++.||+||||+.. ..+++++.++.++|+|+|+++++.||++||++++||++|
T Consensus       199 ~l~~~~~~~~~~~~~N~~R~~i~~~F~dv~cf~Lp~P~~~-~~l~~l~~~~~~~L~~~F~~~v~~L~k~I~~~~~~K~ln  277 (277)
T d1f5na2         199 SLKLKKGTSQKDETFNLPRLCIRKFFPKKKCFVFDRPVHR-RKLAQLEKLQDEELDPEFVQQVADFCSYIFSNSKTKTLS  277 (277)
T ss_dssp             HTCCCCCCSHHHHHHHHHHHHHHHHCSCEEEEECCCCSCG-GGGGGGGGSCGGGSCHHHHHHHHHHHHHHHHHCCCCEET
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCH-HHHCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             9740568406667663699999986688737867887603-440233138820048989999999999996328886369