Citrus Sinensis ID: 002557


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------91
MALVPSRQFCPATAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFYQNFSSNSAHEKNPPRKTCSFSTNNFFSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNNVDLSALGFARTDSDGNGVGGVDDGGSTMGKIVEKLKKFGYVGDGDGDGDGDNDERRGQGKERVIEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGSDGEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATEDDDSEDEGDEAYLEMYAGGNDNEDEIDNSTHNLEMESDFPYHAQDQESETELMDSESEAYTVHSTYCASTDIVEEDNNFY
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHcccEEEEEEcccccccHHHHHHHHHHHHccEEEEEEccEEEEEEcccccccccccHHHHHccccccccccccccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccEEcccccHHHHHHHHHHHHHHHccEEEEEEccccccccHHHHHHHHHHHcccEEEEccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccc
ccccccccccccccHEcccccccccccccccEEEccccccccccccccEcccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccHHHHHHHHccccHcccccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHcccEEEEEcccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccEcccccccccccHHHHHHHHHHHccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccEEEEccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHccccccccEcccccccccHHHHHHHHHHccEEEEEEEccccHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccHHHcccc
malvpsrqfcpataifdsfqssfskfhgthfhffrcghsiplknrffyqnfssnsaheknpprktcsfstnnffsqhdkddnanlcsssswlvkwnkpnkynrlkppqasvnyrknnvdlsalgfartdsdgngvggvddggsTMGKIVEKLKKfgyvgdgdgdgdgdnderrgqgkerviekgsiEDIFYVEegllpnarggfskesplglgeevgsdgevkfpweKRKEEVAEGRWLVkrrssrtslaeltlpesELRRLRNLtfqtksktrikgaGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRgvsyevpsvqlnkriykrnelpassvsqatdKQIHKQISMSVNletaseeqetDFVREVKYEDEVEKLLDglgprytdwpgcdplpvdadmlpgivpgyqppfrvlpygvrstlARKEATNLQRLArvlpphfalgrsRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKltggtllsrnKDFLVfyrgknflspdVTEALQERERLAKSLQDEEEQARLRASAfvlpsietieksgtagtlKETLDAnsrwgkrlddshkENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESlkpaerqadpesitDEERFMFRKLGLRMKAFLLLGrrgvfdgtvenmHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYrgkdyqrpstlrpknLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQmnsvkgtgdeqlydkldsayatedddsedegDEAYLEMYaggndnedeidnsthnlemesdfpyhaqdqesetelmdseseaytvhstycastdiveednnfy
malvpsrqFCPATAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFYQNFSSnsaheknpprKTCSFSTNNFFSQHDKDDNANLCSSSSWlvkwnkpnkynrlkppqasvnyrKNNVDLSALGfartdsdgngvggvddggsTMGKIVEKLKKFgyvgdgdgdgdgdnderrgqgkerviekgsiedIFYVEEGLLPNARGGFSKesplglgeevgsdgevkfpwekrkeevaegrwlvkrrssrtslaeltlpeselrrlrnltfqtksktrikgagltqAVVDIIHekwktseivrlkiegapalnmKRMHEILErktgglviWRSGTAvslyrgvsyevpsvqlnkRIYKRNelpassvsqatdkqIHKQISMSvnletaseeqetdfvrevkyeDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSsiakialkrgvqlttsermvedikkltggtllsrnkDFLVFYRGKnflspdvtEALQERERLAKSLQDEEEQARLrasafvlpsietieksgtagtlketldansrwgkrlddshkenlvreaevrrhaylVQKLEKKLARAERKLLRAERAlskveeslkpaerqadpesitdeERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALAleaesggvlvsvdkiskGYAMVVyrgkdyqrpstlrpknllTKRKALARSIELQRQEALLKHVATLesnagrlrseieqmnsvkgtgdeqlyDKLDSAyatedddsedEGDEAYLEMYAGGNDNEDEIDNSTHNLEMESDFPYHAQDQESETELMDSESEAYTVHStycastdiveednnfy
MALVPSRQFCPATAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFYQNFSSNSAHEKNPPRKTCSFSTNNFFSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNNVDLSALGFARTdsdgngvggvddggsTMGKIVEKLKKFGYVgdgdgdgdgdNDERRGQGKERVIEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGSDGEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQklekklaraerkllraeralSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATedddsedegdeAYLEMYAGGNDNEDEIDNSTHNLEMESDFPYHAQDQESETELMDSESEAYTVHSTYCASTDIVEEDNNFY
*******QFCPATAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFYQNF**********************************CSSSSWLVKWNKPN******************VDLSALGF********************GKIVEKLKKFGYV*************************GSIEDIFYVEEGLLP**************************************RWLV**********************RNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYK*************************************FVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSP*****************************FVL******************************************VRRHAYLVQKL*****************************************RFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ****************************LL*******************************************************************************************************VHSTYCAS***********
********FCPATAIFDSFQSSFSKFHGTHF********************************************************************************************************************IVEKLKKFGYV***********************************************************************************************LPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVP**********************************************************EKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAK**QDE*****************************************************************LEKKLARAERKLLRAE************************EERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTK*******************************************************************************************************************************************
MALVPSRQFCPATAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFYQNFSS***********TCSFSTNNFFSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNNVDLSALGFARTDSDGNGVGGVDDGGSTMGKIVEKLKKFGYVGDGDGDGDGDNDERRGQGKERVIEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGSDGEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELP**********QIHKQISMSVN**********DFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVE*************SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAY***********DEAYLEMYAGGNDNEDEIDNSTHNLEMESDFPYHA****************YTVHSTYCASTDIVEEDNNFY
*****SRQFCPATAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFYQNFSSN*A*******************************SSSWLVKWNKPNKYNRLKPPQASVNYR******************************MGKIVEKLKKFGYVG***************************EDI***EEGLL*****************************************************ELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVP************************************************VREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSI**IEK*GTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNS***********K*************************************************************************YCASTDIVE*****Y
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MALVPSRQFCPATAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFYQNFSSNSAHEKNPPRKTCSFSTNNFFSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNNVDLSALGFARTDSDGNGVGGVDDGGSTMGKIVEKLKKFGYVGDGDGDGDGDNDERRGQGKERVIEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGSDGEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDxxxxxxxxxxxxxxxxxxxxxxxxxASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHxxxxxxxxxxxxxxxxxxxxxKGTGDEQLYDKLDSAYATEDDDSEDEGDEAYLEMYAGGNDNEDEIDNSTHNLEMESDFPYHAQDQESETELMDSESEAYTVHSTYCASTDIVEEDNNFY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query908 2.2.26 [Sep-21-2011]
Q9FYT6715 Chloroplastic group IIA i N/A no 0.545 0.692 0.417 1e-105
Q6YYA3725 Chloroplastic group IIA i no no 0.605 0.758 0.389 1e-104
Q9LF10720 Chloroplastic group IIA i no no 0.562 0.709 0.389 9e-97
Q67XL4444 Uncharacterized CRM domai no no 0.193 0.396 0.351 2e-24
Q84N48611 CRS2-associated factor 2, N/A no 0.148 0.220 0.322 3e-09
Q6Z4U2428 CRS2-associated factor 1, no no 0.072 0.154 0.418 6e-09
Q657G7607 CRS2-associated factor 2, no no 0.107 0.161 0.363 2e-08
Q0J7J7366 CRS2-associated factor 2, no no 0.135 0.336 0.328 4e-08
Q8VYD9405 CRS2-associated factor 1, no no 0.112 0.251 0.346 1e-07
Q9FFU1358 CRS2-associated factor 2, no no 0.064 0.164 0.4 1e-07
>sp|Q9FYT6|CRS1_MAIZE Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1 Back     alignment and function desciption
 Score =  383 bits (983), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/513 (41%), Positives = 321/513 (62%), Gaps = 18/513 (3%)

Query: 274 RIKGAGLTQAVVDIIHEKWKTSE-IVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTA 332
           R K AG+T  VV  +  +W + E +  ++I      +M R  EILE KTGGLV+W  G  
Sbjct: 190 RAKKAGVTDEVVKEVRREWASGEELAAVRIVEPLRRSMDRAREILEIKTGGLVVWTKGDM 249

Query: 333 VSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSVNLETASEEQETDF 392
             +YRG  Y     Q N           +  S      +HK  +   N ++   +++ + 
Sbjct: 250 HFVYRGSKY-----QQN-----------AKHSHTFLTNVHKDDAFQENDQSICGQKDEEP 293

Query: 393 VREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLA 452
           V+   YE EV +LLD LGPR+ DW    PLPVDAD+LP  VPG + P+R+ P GVR TLA
Sbjct: 294 VKGTLYEREVNRLLDTLGPRFVDWWWDTPLPVDADLLPEFVPGSKTPYRLCPPGVRPTLA 353

Query: 453 RKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMV 512
            +E T L++LAR+LP HFALGR+ +LQGLA A++KLWEKS IAKIA+K G+Q T +E+M 
Sbjct: 354 DEELTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQMA 413

Query: 513 EDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAF 572
            ++K LTGGT++ RNKDF++ YRGK+FL   V + + +RE      Q +EE+ARL+A   
Sbjct: 414 WNLKHLTGGTVILRNKDFIILYRGKDFLPGGVAQTVIQREAQVHDEQVKEEEARLKA-VD 472

Query: 573 VLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLA 632
            L  +  + +  + GT +E    ++++     ++    +  EAE  R    ++  E KL+
Sbjct: 473 SLQMVGELSEESSLGTFREYQGFHAKFVHENTENSNTMIELEAEKYRLEKELKDHEWKLS 532

Query: 633 RAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFD 692
              +K+ R+ +AL+K+  S  P+E+ AD E +T+EE+ MFR++G +M   +LLGRRG+FD
Sbjct: 533 VLNKKIERSNQALAKLHSSWSPSEQSADREHLTEEEKIMFRRIGRKMDGLVLLGRRGIFD 592

Query: 693 GTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRG 752
           G +E +H HWK++E+VK+I K     Q    A  LE E+GG+L++V+K++  +A+++YRG
Sbjct: 593 GVIEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTSHAIILYRG 652

Query: 753 KDYQRPSTLRPKNLLTKRKALARSIELQRQEAL 785
           K+Y+RP+     NLLTKR+AL RSIE+QR+ ++
Sbjct: 653 KNYRRPAKSSFSNLLTKREALRRSIEVQRRGSM 685




Required for the splicing of group IIA introns in chloroplasts, and especially for atpF, by regulating the intron folding. Forms splicing particles with RNA. Also involved in chloroplast protein translation.
Zea mays (taxid: 4577)
>sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0360100 PE=2 SV=1 Back     alignment and function description
>sp|Q9LF10|CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=2 SV=2 Back     alignment and function description
>sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1 Back     alignment and function description
>sp|Q84N48|CAF2P_MAIZE CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1 SV=1 Back     alignment and function description
>sp|Q6Z4U2|CAF1M_ORYSJ CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0174900 PE=2 SV=1 Back     alignment and function description
>sp|Q657G7|CAF2P_ORYSJ CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0323300 PE=2 SV=1 Back     alignment and function description
>sp|Q0J7J7|CAF2M_ORYSJ CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0188000 PE=2 SV=2 Back     alignment and function description
>sp|Q8VYD9|CAF1M_ARATH CRS2-associated factor 1, mitochondrial OS=Arabidopsis thaliana GN=At4g31010 PE=2 SV=1 Back     alignment and function description
>sp|Q9FFU1|CAF2M_ARATH CRS2-associated factor 2, mitochondrial OS=Arabidopsis thaliana GN=At5g54890 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query908
224111046894 predicted protein [Populus trichocarpa] 0.924 0.938 0.675 0.0
147852748902 hypothetical protein VITISV_010525 [Viti 0.938 0.944 0.641 0.0
225432918902 PREDICTED: chloroplastic group IIA intro 0.932 0.939 0.641 0.0
356576487835 PREDICTED: chloroplastic group IIA intro 0.893 0.971 0.645 0.0
449432614874 PREDICTED: chloroplastic group IIA intro 0.939 0.975 0.627 0.0
255551945773 conserved hypothetical protein [Ricinus 0.810 0.952 0.701 0.0
357441009838 Chloroplastic group IIA intron splicing 0.878 0.952 0.608 0.0
297831030873 hypothetical protein ARALYDRAFT_898801 [ 0.884 0.919 0.601 0.0
30686898881 CRM family member 3A [Arabidopsis thalia 0.864 0.891 0.596 0.0
9294196850 unnamed protein product [Arabidopsis tha 0.830 0.887 0.588 0.0
>gi|224111046|ref|XP_002315729.1| predicted protein [Populus trichocarpa] gi|222864769|gb|EEF01900.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1129 bits (2920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 607/899 (67%), Positives = 701/899 (77%), Gaps = 60/899 (6%)

Query: 1   MALVPSRQFCPATAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFYQNFSSNSAHEKN 60
           MALVPSRQ        DSFQSSFSKFHGT   FFR   S PL++   Y    + S  +KN
Sbjct: 1   MALVPSRQLY-----IDSFQSSFSKFHGTPLQFFRYSSSFPLRSHSGY----ACSITDKN 51

Query: 61  PPRKTCSFSTNNFFSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNNVDL 120
           P  K+ SF T       DK    NL + SSW   WNKPNK N  + PQA  +YR NN + 
Sbjct: 52  PSTKSTSFPT-------DKSKTLNLSTGSSWFFNWNKPNKQNLPRTPQAVFDYRSNNSNS 104

Query: 121 SALGFARTDSDGNGVGGVDDGGSTMGKIVEKLKKFGYVGDGDGDGDGDNDERRGQGKERV 180
           S  G                  STM KIVEKLKK GY+       DGD +E + + +ERV
Sbjct: 105 SGSG------------------STMEKIVEKLKKHGYM-------DGDVNENKERMQERV 139

Query: 181 IEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGSDGEVKFPWEKRKEEVAEGRWLV 240
           IEKGS+EDIFYVEEG+LPNARGGFSKESPLG+ +   SDGEV+FPWEK K+E  EG+W  
Sbjct: 140 IEKGSVEDIFYVEEGMLPNARGGFSKESPLGVEDVFRSDGEVRFPWEKPKKEEDEGKW-T 198

Query: 241 KRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRL 300
            R  SRTSLAELTLPESELRRLRNLT+ TKSKTR+ G G+TQ VVD IH+KWKTSEI R+
Sbjct: 199 ARSKSRTSLAELTLPESELRRLRNLTYGTKSKTRVGGRGVTQEVVDAIHDKWKTSEIARV 258

Query: 301 KIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPA 360
           K+EGAPALNMKRMHEILE KTGGLVIWRSG  VSLYRGVSYE P+++  KRI+K+ E  +
Sbjct: 259 KVEGAPALNMKRMHEILENKTGGLVIWRSGATVSLYRGVSYEDPALKWKKRIFKKKETSS 318

Query: 361 SSVSQAT------------DKQIHK-QISMSVNLETASEEQETDFVREVKYEDEVEKLLD 407
           +S+  AT            D +IH  +    +N+E A++ +ET    +VKYEDEV+KLLD
Sbjct: 319 NSLPAATSITIGSQSKNSPDNEIHAPRPKTEINVEAANQ-KETKTQTDVKYEDEVDKLLD 377

Query: 408 GLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLP 467
           GLGPRYTDWPG DPLPVDADMLPG++PGYQPPFR+LPYGVR TL R+++T+L+RLARVLP
Sbjct: 378 GLGPRYTDWPGLDPLPVDADMLPGVIPGYQPPFRILPYGVRPTLGRQDSTSLRRLARVLP 437

Query: 468 PHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRN 527
           PHFA+GRSRQLQGLAVAMIKLWEKSSI K+ALKRGVQLTTSERM EDIKKLTGG LLSRN
Sbjct: 438 PHFAVGRSRQLQGLAVAMIKLWEKSSIVKVALKRGVQLTTSERMAEDIKKLTGGLLLSRN 497

Query: 528 KDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAG 587
           KDFLVFYRGK+FLSP+V+EAL ERERLAKSLQDEEEQARLRASA V+PS E +E+SG AG
Sbjct: 498 KDFLVFYRGKDFLSPEVSEALLERERLAKSLQDEEEQARLRASALVIPSDEIMEESGIAG 557

Query: 588 TLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSK 647
           +L+ETLDA+++WGKRLDD HKE ++REAE+ RHA +V++LEKKLA A+RKL RAER L+K
Sbjct: 558 SLEETLDADAKWGKRLDDCHKEKIIREAEIVRHASIVRRLEKKLAFAQRKLRRAERTLNK 617

Query: 648 VEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYREL 707
           VE  LKP+ERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYREL
Sbjct: 618 VEGFLKPSERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYREL 677

Query: 708 VKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLL 767
           VKII+K K+F+Q KKIALALEAESGGVLVSVDKISKGYA++VYRGKDYQRPS LRPKNLL
Sbjct: 678 VKIILKAKSFEQVKKIALALEAESGGVLVSVDKISKGYAIIVYRGKDYQRPSMLRPKNLL 737

Query: 768 TKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYAT 827
           TKRKALARSIE+QR EAL  HV+ LE    ++RSEIEQM  VK  GDE+LYD+LDSAY T
Sbjct: 738 TKRKALARSIEIQRSEALQNHVSALEIKVEKIRSEIEQMGFVKDKGDEELYDRLDSAYLT 797

Query: 828 --EDDDSEDEGDEAYLEMYAGGN--DNEDEIDNSTHNLEMESDFPYHAQDQESETELMD 882
             + DDSEDEGDEAYLE Y   N  D +DE D++ HN  ++++   + Q QESETE  D
Sbjct: 798 DDDADDSEDEGDEAYLETYNSENDVDYDDETDSTVHNAHLDTNLLNNVQIQESETEPED 856




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852748|emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225432918|ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Vitis vinifera] gi|297737163|emb|CBI26364.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356576487|ref|XP_003556362.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|449432614|ref|XP_004134094.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Cucumis sativus] gi|449504099|ref|XP_004162252.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255551945|ref|XP_002517017.1| conserved hypothetical protein [Ricinus communis] gi|223543652|gb|EEF45180.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|357441009|ref|XP_003590782.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago truncatula] gi|355479830|gb|AES61033.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|297831030|ref|XP_002883397.1| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp. lyrata] gi|297329237|gb|EFH59656.1| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30686898|ref|NP_188947.2| CRM family member 3A [Arabidopsis thaliana] gi|332643191|gb|AEE76712.1| CRM family member 3A [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|9294196|dbj|BAB02098.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query908
TAIR|locus:2094558881 CFM3A "CRM family member 3A" [ 0.848 0.874 0.592 1.1e-242
TAIR|locus:2094997848 EMB1865 "embryo defective 1865 0.656 0.702 0.460 9.4e-137
TAIR|locus:2096662 1011 CFM2 "CRM family member 2" [Ar 0.784 0.704 0.390 1.6e-125
TAIR|locus:2181372720 CRS1 "ortholog of maize chloro 0.436 0.55 0.429 4.8e-95
TAIR|locus:2094438444 LOH1 "LAG One Homologue 1" [Ar 0.169 0.346 0.362 1.9e-21
TAIR|locus:2123276343 AT4G13070 [Arabidopsis thalian 0.162 0.431 0.387 1.3e-18
TAIR|locus:2091458 491 AT3G27550 [Arabidopsis thalian 0.150 0.279 0.342 3e-16
TAIR|locus:2056558372 AT2G28480 [Arabidopsis thalian 0.143 0.349 0.383 8.8e-16
TAIR|locus:2126694405 AT4G31010 [Arabidopsis thalian 0.111 0.249 0.390 2.9e-11
TAIR|locus:2160195358 AT5G54890 [Arabidopsis thalian 0.120 0.304 0.350 3.2e-09
TAIR|locus:2094558 CFM3A "CRM family member 3A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2279 (807.3 bits), Expect = 1.1e-242, Sum P(3) = 1.1e-242
 Identities = 476/804 (59%), Positives = 581/804 (72%)

Query:    64 KTCSFSTNNFFSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNNVDLSAL 123
             K  +FS+ N      +   +  C++  WL  WN+  K N+ KPP+  VNYRK        
Sbjct:    43 KGVTFSSRNDQIASRRFSFSRDCNNGVWLENWNRIQKRNQPKPPKVVVNYRKEG------ 96

Query:   124 GFARTXXXXXXXXXXXXXX-XTMGKIVEKLKKFGYVXXXXXXXXXXNDERRGQGKERVIE 182
              F+ +                TM KIVEKLKK+GY+          N E     +ER IE
Sbjct:    97 RFSGSEIVSGDDNRSRDGDGSTMEKIVEKLKKYGYMEEVQ------NKEIE---QERRIE 147

Query:   183 KGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEV-GSDGEVKFPWEK---RKEEVAEGRW 238
             KGS+EDIFYVEEG LPN RGGF++ES LG GE V GS+G+V FPWEK   ++++  E  W
Sbjct:   148 KGSVEDIFYVEEGKLPNTRGGFTEESLLG-GENVIGSNGDVGFPWEKMSAKEKKELEAEW 206

Query:   239 LVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIV 298
               K+ + R SLAE+TLPESELRRLRNLTF+T SK RI+G G+TQ  VD I EKWK++EIV
Sbjct:   207 TAKKEN-RYSLAEMTLPESELRRLRNLTFRTASKMRIRGGGVTQVAVDAIKEKWKSAEIV 265

Query:   299 RLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNEL 358
             RLKIEGA ALNM++MHEILE+KTGGLVIWRSGT++SLYRGVSYE+PS + NK+  +R E 
Sbjct:   266 RLKIEGASALNMRKMHEILEKKTGGLVIWRSGTSISLYRGVSYELPSGKWNKQ--RREET 323

Query:   359 PASSV----SQAT---DKQIHKQISMSVNLETASEEQETDFVREVKYEDEVEKLLDGLGP 411
             P  +V     + T   DK   K     +  ET S E++      V+YEDE+++LLD LGP
Sbjct:   324 PPEAVIENHDETTTMVDKSDEKVHLPQLEQETTSVEKKDQTSPVVEYEDELDELLDDLGP 383

Query:   412 RYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFA 471
             R+ DWPG +PLPVDAD+LPG +P Y+PPFRVLPYGVRS+L  KEAT L+RLAR +PPHFA
Sbjct:   384 RFMDWPGDNPLPVDADLLPGAIPDYEPPFRVLPYGVRSSLGPKEATALRRLARSIPPHFA 443

Query:   472 LGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFL 531
             LGRSRQLQGLA AM++LWEKS +AKIA+KRGVQ TTSERM ED+KKLTGG +LSRNKDFL
Sbjct:   444 LGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSERMAEDLKKLTGGIMLSRNKDFL 503

Query:   532 VFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLR-ASAFVLPSIETIEKSGTAGTLK 590
             VFYRGKNFLS +V +AL E+ER  ++LQDEEEQARLR +SA ++PS E   K  +AGTL 
Sbjct:   504 VFYRGKNFLSREVADALVEQERFVRTLQDEEEQARLRGSSALIVPSTEPANKLVSAGTLG 563

Query:   591 ETLDANSRWGKRLDDS-HKENLVREAEVRRHAYLVQXXXXXXXXXXXXXXXXXXXXSKVE 649
             ETLDA  +WGK LDD  H + + +E E+ RH  LV+                    +KVE
Sbjct:   564 ETLDATGKWGKNLDDDDHSDEVKQEVEILRHENLVRKLERKLAFAERKLLKAERGLAKVE 623

Query:   650 ESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVK 709
               LKPAE++ DPESITDEERFMFRKLGL+MKAFLLLGRRGVFDGTVENMHLHWKYRELVK
Sbjct:   624 VCLKPAEQREDPESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVK 683

Query:   710 IIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTK 769
             IIVK KTFD  KK+ALALEAESGG+LVS+DK++KGYA++VYRG+DY+RP+ LRPKNLLTK
Sbjct:   684 IIVKAKTFDGVKKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLLTK 743

Query:   770 RKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATXX 829
             RKALARSIELQR+E LLKH++T+++ A +LR+EIEQM  V   GDE+LY+KLD AYA+  
Sbjct:   744 RKALARSIELQRREGLLKHISTMQAKAKQLRAEIEQMEKVTDKGDEELYNKLDMAYASSD 803

Query:   830 XXXXXXXXX-AYLEMYAGGNDNED 852
                       A+ E YA G D E+
Sbjct:   804 EETDEEDDDDAFPETYAEGEDGEE 827


GO:0003723 "RNA binding" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0000373 "Group II intron splicing" evidence=IMP
GO:0048316 "seed development" evidence=IGI
TAIR|locus:2094997 EMB1865 "embryo defective 1865" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2096662 CFM2 "CRM family member 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2181372 CRS1 "ortholog of maize chloroplast splicing factor CRS1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094438 LOH1 "LAG One Homologue 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2123276 AT4G13070 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091458 AT3G27550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056558 AT2G28480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126694 AT4G31010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160195 AT5G54890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query908
smart0110384 smart01103, CRS1_YhbY, Escherichia coli YhbY is as 9e-22
pfam0198584 pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain 1e-21
smart0110384 smart01103, CRS1_YhbY, Escherichia coli YhbY is as 5e-19
pfam0198584 pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain 4e-18
smart0110384 smart01103, CRS1_YhbY, Escherichia coli YhbY is as 8e-13
pfam0198584 pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain 2e-11
>gnl|CDD|198171 smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly Back     alignment and domain information
 Score = 89.8 bits (224), Expect = 9e-22
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 4/88 (4%)

Query: 664 ITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKI 723
           +T +++   R L   +K  + +G+ G+ +G +E +    +  EL+K+ V     +  K+I
Sbjct: 1   LTGKQKRYLRSLAHHLKPVVQIGKNGLTEGVLEEIDEALEKHELIKVKVLGNDREDRKEI 60

Query: 724 ALALEAESGGVLVSVDKISKGYAMVVYR 751
           A  L  E+G  LV V     G  +V+YR
Sbjct: 61  AEELAEETGAELVQV----IGKTIVLYR 84


GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome. Length = 84

>gnl|CDD|190184 pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain Back     alignment and domain information
>gnl|CDD|198171 smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly Back     alignment and domain information
>gnl|CDD|190184 pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain Back     alignment and domain information
>gnl|CDD|198171 smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly Back     alignment and domain information
>gnl|CDD|190184 pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 908
KOG1990564 consensus Poly(A)-specific exoribonuclease PARN [R 100.0
PRK1034397 RNA-binding protein YhbY; Provisional 99.93
TIGR0025395 RNA_bind_YhbY putative RNA-binding protein, YhbY f 99.93
PF0198584 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR 99.92
PRK1034397 RNA-binding protein YhbY; Provisional 99.92
TIGR0025395 RNA_bind_YhbY putative RNA-binding protein, YhbY f 99.91
PF0198584 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR 99.9
COG153497 Predicted RNA-binding protein containing KH domain 99.9
COG153497 Predicted RNA-binding protein containing KH domain 99.89
KOG1990564 consensus Poly(A)-specific exoribonuclease PARN [R 98.15
>KOG1990 consensus Poly(A)-specific exoribonuclease PARN [Replication, recombination and repair] Back     alignment and domain information
Probab=100.00  E-value=4.4e-82  Score=716.68  Aligned_cols=533  Identities=46%  Similarity=0.666  Sum_probs=499.5

Q ss_pred             cccccccccccCCCHHHHHHHHhhhcCCCCeEEeCCCCCCHHHHHHHHHHHHhCCeEEEEecCCChhhHHHHHHHHHHHh
Q 002557          242 RRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKT  321 (908)
Q Consensus       242 kk~s~pslAEltLT~kErr~LR~lAh~LkPvV~IGK~GLTd~VVeeIh~awk~hELVKVK~l~~~~~dmk~~ae~LEekT  321 (908)
                      ++.+ +++|++++.+.++++||..|..+.-.+  +++|+|+.+++.|++.|+.+|+++++|....+.+|.+.+++++..|
T Consensus         3 ~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~y~k~k~~~~~~~~~q~~~~~~~~~~~~~~~~~~   79 (564)
T KOG1990|consen    3 NFES-LSLAELTVDEADLRRLRLVATGMTSAP--WKAGSTFDTVEAIYLKWKDNEEVYLKFQFGLCLFMKRSHEALEMST   79 (564)
T ss_pred             cccc-hhHHHhhcCHHHHHHHhhhhccceecc--cccccchhhhHHHHHHHHhhhhhheeeccccchhHHHhhhHhhccC
Confidence            3456 999999999999999999999998888  9999999999999999999999999999999999999999999999


Q ss_pred             CC-eEEEEEccEEEEeecCCCCCCccchhhhhhhccCCCCCCCCccchhhhhhcccccccccccccccccccccccchHH
Q 002557          322 GG-LVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSVNLETASEEQETDFVREVKYED  400 (908)
Q Consensus       322 Gg-eVVqrIG~viVLYRgsnY~~p~~~~~~~~~~~~e~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  400 (908)
                      |+ .+||+.|.....|++..|..|..-.++.                             ++      +....-..+++.
T Consensus        80 ~~n~~~~~~g~~~s~~~~~~~~~~~~~~~~~-----------------------------~~------~~~~~~~~~~~~  124 (564)
T KOG1990|consen   80 GGNFVVWSRGDSISSPEFLCQRSPVDFVARQ-----------------------------QE------NQAGKWPSELEK  124 (564)
T ss_pred             CCceeeeecCccccCCccceeecchhhhhhh-----------------------------ch------hhhhhhHHHHHH
Confidence            99 9999999999999999998875432211                             00      000111467899


Q ss_pred             HHHhhhcCCCCcccCCCCCCCCCCCCCCCCCcCCCCCCCcccCCCCCCccCCHHHHHHHHHhcccCCCeEEecccchhhH
Q 002557          401 EVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQG  480 (908)
Q Consensus       401 E~d~LLD~LGPRf~dW~g~~PlPVDaDLLP~vVpgyk~PfRllP~Gvr~~Lt~~E~T~LRrLar~lPpHfaLGRNr~lqG  480 (908)
                      |.+.+||++||+|.|||+.+|+|||+||||++||+|.+|||.+|+|++++|+..|+|.+|++|+.+||||+||+++.+||
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~i~~~~~p~r~l~~~~~~~l~~~~~~~~r~~~~~~p~~~~~~~~~~~~~  204 (564)
T KOG1990|consen  125 EKNELLDSLGPELSDWGGSDRLSVDADLLPEKIPDYMRPFRTLPVGSPPLLTSIESTLLRRLGYKLPPHFALGRSRKLQG  204 (564)
T ss_pred             HHHHHhhccCcccccCCCCCCccchhhhchhhhhcccChhccCCCCChhhhhhHHHHHHHHhcccccccceehhcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcceeeeeeccCCCCCchHHHHHHH--hhcccceeeeccCCeEEEEecCCCCcHHHHHHHHHHHHHHHhh
Q 002557          481 LAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDI--KKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSL  558 (908)
Q Consensus       481 LA~AIvKLWEKs~IAKIaiKrGvqnT~ne~MaeEL--K~LTGGvLLsRnk~~IV~YRGKDFLp~~Va~al~eRe~~~~~~  558 (908)
                      ||.+|+++|++|+++||+|+||+++|.++.||.+|  +.+||++|++||+.++|+|||++||+ .|.++|.++.......
T Consensus       205 ~~~~~~~~~~k~~~~k~~~~rg~~~~~~~~~a~~l~~~~~tg~~lv~hN~~~dv~y~~~~Fl~-~lp~~l~~f~~~~~~f  283 (564)
T KOG1990|consen  205 LAVAMVSFWEKHEFAKILIKRGVLETRKERMADELQELLLTGKVLVLHNKLLDVMYRYKNFLS-PLPSTLEEFTDSSSMF  283 (564)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcchhhhccchHHHHHHHHhcCCeEEeeccceeeeeehhhccc-ccchhHHHhhhhhhhh
Confidence            99999999999999999999999999999999999  99999999999999999999999999 9999999999998899


Q ss_pred             hhHHHHHHhhhhcccccccccccccCccchhHHHHHhhhccccCCChhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002557          559 QDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHK-ENLVREAEVRRHAYLVQKLEKKLARAERK  637 (908)
Q Consensus       559 q~~EE~aR~~a~~~~~~~~~~~~~~~~aGtl~e~~~a~~~~g~~~~~~~~-~~~~~e~~~~r~~~~~k~~e~kL~~a~~K  637 (908)
                      ++.++.+|+.+....       .....++|+.|+..+.++|+..+.-... ..+..+.++..+++..+.+.++++.+++|
T Consensus       284 p~~~~~~~~~~~~~~-------~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~  356 (564)
T KOG1990|consen  284 PNIEDTKRLAKLSEY-------QKLNLKATLLELARAKAKKEKEIERRSISSRLKLEFEKASSEKLTEAIFHKLEKAKKK  356 (564)
T ss_pred             hhhHHHHHhhccccc-------cchhhhhhHHHHHHHhcccccCcccccccchhhhhhhccchhhHHHHHHHHHhhhhhh
Confidence            999999999983311       1246899999999999999999975543 46788899999999999999999999999


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCCCCCHHHHHHHHhhccCCcceEEeCCCCCCHHHHHHHHHHHHhCCeEEEEEcCCCH
Q 002557          638 LLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTF  717 (908)
Q Consensus       638 ~~rae~~L~K~e~~~~p~~~~~d~E~LT~eER~~LRklAhkLKPvV~IGKrGVTdgVIeeIh~hwk~hELVKVkv~~~~~  717 (908)
                      +.++++.|++++....|++...|++.+|.+++.+++++|.+|++++.+|++|+++|+|.+||+||++||++||+|+....
T Consensus       357 ~~~~~~~l~~~~~~~~~~~~~~~~e~~t~ee~~~~~k~g~k~~~~~~~~rrg~f~g~i~n~~l~wk~~e~~k~i~~~~~~  436 (564)
T KOG1990|consen  357 LASANRILAKLEDPKIPAELRYDPESITEEERLMLRKVGLKMKRRLLSGRRGVFDGVIENMHLHWKSRELVKVICKEKNL  436 (564)
T ss_pred             ccchhhhhhcccccccccccccchhhcChHHHHHHHHHHHhhccccccCCcccccceeecchhhhhhcccceeeeccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998766


Q ss_pred             -HHHHHHHHHHHHHhCCEEEeccccccccEEEEEecCCCCCCCCCCCCccccHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002557          718 -DQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNA  796 (908)
Q Consensus       718 -~d~keiAe~Le~~SGg~LVqV~k~~IG~tiILYRgkNY~rP~~l~PknlLTKrkAl~rS~e~qr~~~l~~hI~~l~~~i  796 (908)
                       .+++..|..++.++|+++|.|+++..|+.|+.|||+||++|..++|.++|+||+|+.+++++|++++++.||..+..++
T Consensus       437 ~~~~~~~a~~le~esg~~~v~~~~~~~~~ai~~yr~k~y~~p~~l~P~~~l~~~k~~~~~~~~~~~~a~~~~i~~~~~~~  516 (564)
T KOG1990|consen  437 PSQVKQYASALERESGGILVSIDKNPKGYAIIAYRGKNYDRPTSLRPRNLLSRRKALERSLEEQRKEALKSHISDLEQEI  516 (564)
T ss_pred             cHHHHHHHHHHHHHhCCceeeeccCCchhhHHHhhhhhccCCcccCchhhhcccCCccccHHHHHHHHHhhhcchhhhhH
Confidence             9999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccCCCcHHHHHh
Q 002557          797 GRLRSEIEQMNSVKGTGDEQLYDK  820 (908)
Q Consensus       797 ~~l~~~l~~~~~~~~~~d~~ly~~  820 (908)
                      ++++.+++.|.......|.+.|++
T Consensus       517 e~~~~~~~~~~~~~~~~d~~~en~  540 (564)
T KOG1990|consen  517 EQLQASVEAMPAINKKDDLEEENS  540 (564)
T ss_pred             HHhhcchhcccccccccchHHHhh
Confidence            999999999999988999999998



>PRK10343 RNA-binding protein YhbY; Provisional Back     alignment and domain information
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family Back     alignment and domain information
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain Back     alignment and domain information
>PRK10343 RNA-binding protein YhbY; Provisional Back     alignment and domain information
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family Back     alignment and domain information
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain Back     alignment and domain information
>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1990 consensus Poly(A)-specific exoribonuclease PARN [Replication, recombination and repair] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query908
1jo0_A98 Hypothetical protein HI1333; structural genomics, 2e-12
1jo0_A98 Hypothetical protein HI1333; structural genomics, 3e-09
1rq8_A104 Conserved hypothetical protein; structural genomic 6e-12
1rq8_A104 Conserved hypothetical protein; structural genomic 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A Length = 98 Back     alignment and structure
 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 17/89 (19%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 663 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKK 722
           +++ +++   + L   +   ++LG  G+ +G +  +     + EL+K+ V     +  + 
Sbjct: 2   TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQL 61

Query: 723 IALALEAESGGVLVSVDKISKGYAMVVYR 751
           I  A+  E+    V       G+ +V+YR
Sbjct: 62  IINAIVRETKAAQVQT----IGHILVLYR 86


>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A Length = 98 Back     alignment and structure
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1 Length = 104 Back     alignment and structure
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1 Length = 104 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 908
d1jo0a_97 d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus i 1e-21
d1jo0a_97 d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus i 8e-16
d1jo0a_97 d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus i 1e-12
d1rq8a_96 d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphy 3e-21
d1rq8a_96 d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphy 6e-17
d1rq8a_96 d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphy 6e-12
>d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} Length = 97 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: YhbY-like
family: YhbY-like
domain: YhbY homologue HI1333
species: Haemophilus influenzae [TaxId: 727]
 Score = 87.8 bits (218), Expect = 1e-21
 Identities = 18/102 (17%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 663 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKK 722
           +++ +++   + L   +   ++LG  G+ +G +  +     + EL+K+ V     +  + 
Sbjct: 2   TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQL 61

Query: 723 IALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPK 764
           I  A+  E+    V       G+ +V+YR  +        P+
Sbjct: 62  IINAIVRETKAAQVQT----IGHILVLYRPSE--EAKIQLPR 97


>d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} Length = 97 Back     information, alignment and structure
>d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} Length = 97 Back     information, alignment and structure
>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} Length = 96 Back     information, alignment and structure
>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} Length = 96 Back     information, alignment and structure
>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} Length = 96 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query908
d1rq8a_96 Hypothetical protein SAV1595 {Staphylococcus aureu 99.9
d1jo0a_97 YhbY homologue HI1333 {Haemophilus influenzae [Tax 99.9
d1jo0a_97 YhbY homologue HI1333 {Haemophilus influenzae [Tax 99.89
d1rq8a_96 Hypothetical protein SAV1595 {Staphylococcus aureu 99.89
>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: YhbY-like
family: YhbY-like
domain: Hypothetical protein SAV1595
species: Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]
Probab=99.90  E-value=2.7e-23  Score=180.16  Aligned_cols=90  Identities=18%  Similarity=0.303  Sum_probs=66.8

Q ss_pred             CCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCE
Q ss_conf             99999999999611089872882789987999999999987299398996289856499999999998499289898548
Q 002557          253 TLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTA  332 (908)
Q Consensus       253 tLT~kErr~LR~lAh~LkpvV~IGK~GVTd~VIeeIheaLk~hELVKIKil~~~~~dmk~v~e~LEekTGgeVVqrIG~v  332 (908)
                      |||++|+++||++||+|+|+|+|||+|||++|+++|+++|++||||||||++++..+++++++.|+++|||.+||+||++
T Consensus         1 mLt~kqr~~LR~~ah~l~p~v~IGk~Glt~~vi~ei~~~l~~~ELIKvk~~~~~~~~~~~~~~~l~~~t~a~~V~~iG~~   80 (96)
T d1rq8a_           1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIGSM   80 (96)
T ss_dssp             CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEETTE
T ss_pred             CCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCE
T ss_conf             96989999999976689998998899878999999999997597159996579989999999999998699999998999


Q ss_pred             EEEEECCCCC
Q ss_conf             9995068999
Q 002557          333 VSLYRGVSYE  342 (908)
Q Consensus       333 iVLYRg~nY~  342 (908)
                      +||||+++++
T Consensus        81 ~vlyR~~~~~   90 (96)
T d1rq8a_          81 IVIYRESKEN   90 (96)
T ss_dssp             EEEEECCCSC
T ss_pred             EEEEECCCCC
T ss_conf             9999579889



>d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} Back     information, alignment and structure