Citrus Sinensis ID: 002565

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------
MAAISPIDISSSDSDLDIGESDTSETRQSGNVRILPPWATKAAVNARTGYGGQSQKVPSFERSYASNGSSSNANSYSQEKLQMLPGFSDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQALKRTLPAFPQPHSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSKGYIRDYYVKKNDDDIMMYEGNRILPSSLMHGKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREVCSL
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccHHHHHHHHHHHHHHcccccccEEEEEEcccccccHHHHccccEEEcHHHHHHHcccccccccHHHHHHHcccccccccHHHHHccccccccccccccccccccccccccccccccccccEEEEEEEccccccccHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHcccccccccccccccccccccEEEEEEEHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHccccccccc
ccccccEEEcccccccEEccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccEcccHHHHHHHHHHHHHHHcccccccccEEcccccccHHHHHHHHHHHccccccccccccccccHHHcccccHHHccccccccccccccHccccccHHHHHHHHccccccccccccEEEccHHHHHHHHHHHHHHccccccEEEEEEEcccccccHHHHHcccEEEEEccEEEHHcccccccccccHHccccccccccccccccccccccccccccccccEEEccccccccccccccHEHEEEEEEHHHHHccccHHHHHHHHHHHHHccEEEEcccHHHccHHHHHHHHHHHcccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccEEEcccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHcccccccccccccHHHHHccHHHHHHHHHHHHHccccccccccccccccEEcccHHHHHHHHHHHHHcccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccccEEEEEEHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHcccccEEEc
maaispidisssdsdldigesdtsetrqsgnvrilppwatKAAVnartgyggqsqkvpsfersyasngsssnansysqeklqmlpgfsddhqmsngqaddshylsgnknvgqlqtvnprianvasadyekiSSQQALKrtlpafpqphslntkskssvenmnssqirdtfgnayhlagpstvnskgyirdyyvkkndddimmyegnrilpsslmhgksvsmtqfggpsdlayrsgsaderavggdeRLIYQAALEdlnqpkveatlpdgllSVNLLKHQKIALAWMLQKETRSLhclggiladdqglgkTISIIALIQMQRSlqsksktevlgnqktealnldddddngnagldkvketgesddikpvpevststrsfsrrrpaagtlvvcpASVLRQWARELEDKVPDKAALSVLIYhggsrtkdpvelaKYDVVLTTYSIVtnevpkqpsvdeeeadekngetyglssefsvnkkrKKISNvskrgkkgkkgnvnssidygcgplakvgwFRVVLDEAQTIKNHRTQVARACCSLRAkrrwclsgtpiqnsIDDLYSYFrflkydpyavYKSFYstikipisrnslhGYKKLQAVLRAIMLRRtkgtfidgqpiinlppktisltkvdfskEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQAcdhpllvkeydfdsvgkISGEMAKRLPRDMLIDLLSRLetssaiccvcsdppedsvvtmCGHVFCYQcaseyitgddnmcpaprckeqlgadvvfskttlkncvsddgggsptdspfadksgildneyiSSKIRTVLDILHTQCELNTKCSIVEIHdlagsngssavhskspiegpiksIVFSQWTRMLDLVENSLNQHCIQyrrldgtmslpardravkdfntdrevcsl
maaispidisssdsdldigesdtsetrqsgnvrilppwATKAAVNARTGYGGQSQKVPSFERSYASNGSSSNANSYSQEKLQMLPGFSDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQALKRTlpafpqphslntkskssvENMNSSQIRDTFGNAYHlagpstvnskgyIRDYYVKKNDDDIMMYEGNRILPSSLMHGKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTealnldddddngNAGLDkvketgesddikpvpevststrsfsrrrpaagtlvvcpaSVLRQWARELEDKVPDKAALSVLIyhggsrtkdpveLAKYDVVLTTYSIvtnevpkqpsvdeeeadekngetyglssefsvnkkrkkisnvskrgkkgkkgnvnssidygcGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLrakrrwclsgtpiqnsIDDLYSYFRFLKYDPYAVYKSFYSTIKipisrnslhgyKKLQAVLRAIMLRRTKgtfidgqpiinlppktisltKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNcvsddgggsptdspfadksgiLDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGssavhskspiegpIKSIVFSQWTRMLDLVENSLNQHCIQYrrldgtmslpardravkdfntdrevcsl
MAAispidisssdsdldigesdTSETRQSGNVRILPPWATKAAVNARTGYGGQSQKVPSFERsyasngsssnansysQEKLQMLPGFSDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQALKRTLPAFPQPHSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSKGYIRDYYVKKNDDDIMMYEGNRILPSSLMHGKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEalnldddddngnagldKVKETGESDDIKPVPEVststrsfsrrrPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKIsnvskrgkkgkkgnvnssIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREVCSL
*********************************ILPPWATKAA*****************************************************************************************************************************TFGNAYHLAGPSTVNSKGYIRDYYVKKNDDDIMMYEGNRIL************************************ERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM*****************************************************************AGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTN*****************************************************SIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCV*****************GILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAG**************GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT**********************
****SPI***************************************************************************************************************************************************************************************************************************************************************************LLKHQKIALAWML*******************LGKTISIIALIQMQRSLQSKSKTEVLGNQK***********************************************AAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPK*****************************************************GCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGT*I**Q*IINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKF**********QNYANILLMLLRLRQACDHPLLVK********************DMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSG***********************************LA*SNG********PIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREVCSL
MAAISPIDIS******************SGNVRILPPWATKAAVNAR*****************************SQEKLQMLPGFSDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQALKRTLPAFPQPHSLN***********SSQIRDTFGNAYHLAGPSTVNSKGYIRDYYVKKNDDDIMMYEGNRILPSSLMHGKSVSMTQFGGPSDLAY*********VGGDERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVKE***********************RPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEV**********************************************GNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGS*********SPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF*********
************DSDL*I***********GNVRI****AT********************************************************************************************S**ALKRTLPAFPQP****************SQI*DTFGNAYHLAGP****SKGYIRDYYVKKNDDDIMMYEGNRILPS*******************************GGDERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRS*******************************************KPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPK*****************************************GKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEY********SG**AKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSK*******************************ISSKIRTVLDILHTQCEL********IHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREVCSL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAAISPIDISSSDSDLDIGESDTSETRQSGNVRILPPWATKAAVNARTGYGGQSQKVPSFERSYASNGSSSNANSYSQEKLQMLPGFSDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQALKRTLPAFPQPHSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSKGYIRDYYVKKNDDDIMMYEGNRILPSSLMHGKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREVCSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query907 2.2.26 [Sep-21-2011]
Q9FNI61029 Putative SWI/SNF-related no no 0.545 0.481 0.309 8e-71
Q9FIY71277 Putative SWI/SNF-related no no 0.539 0.382 0.305 4e-66
O60177 1040 Uncharacterized ATP-depen yes no 0.590 0.515 0.294 1e-62
Q9FF61 881 Putative SWI/SNF-related no no 0.626 0.644 0.279 6e-60
O13762 897 Uncharacterized ATP-depen no no 0.584 0.590 0.291 5e-59
Q4WVM1 1245 DNA repair protein rad5 O no no 0.555 0.404 0.276 4e-58
Q08562 1619 ATP-dependent helicase UL yes no 0.598 0.335 0.289 1e-57
Q7S1P91222 DNA repair protein rad-5 N/A no 0.558 0.414 0.272 3e-57
Q5BHD6 1202 DNA repair protein rad5 O no no 0.554 0.418 0.282 1e-56
Q14527 1009 Helicase-like transcripti yes no 0.478 0.430 0.289 4e-56
>sp|Q9FNI6|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1 Back     alignment and function desciption
 Score =  269 bits (687), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 197/636 (30%), Positives = 299/636 (47%), Gaps = 141/636 (22%)

Query: 298 GGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVK 357
           GGILAD  GLGKT+  I+L+ +  S ++ S   +  N +                 DKV 
Sbjct: 414 GGILADAMGLGKTVMTISLL-LAHSWKAASTGFLCPNYEG----------------DKVI 456

Query: 358 ETGESDDIKPVPEVSTSTRSFSRRR-------PAAGTLVVCPASVLRQWARELEDKVPDK 410
            +   DD+   P  +T    F +R           G L+VCP ++L QW  E+E      
Sbjct: 457 SSS-VDDLTSPPVKATKFLGFDKRLLEQKSVLQNGGNLIVCPMTLLGQWKTEIEMHA-KP 514

Query: 411 AALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSS 470
            +LSV +++G SR KD   L++ DVV+TTY ++T+E  ++ S D E              
Sbjct: 515 GSLSVYVHYGQSRPKDAKLLSQSDVVITTYGVLTSEFSQENSADHE-------------- 560

Query: 471 EFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQV 530
                                               +  V WFR+VLDEA TIKN ++Q+
Sbjct: 561 -----------------------------------GIYAVRWFRIVLDEAHTIKNSKSQI 585

Query: 531 ARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHG 590
           + A  +L A RRWCL+GTPIQN+++DLYS  RFL+ +P+  +  +   ++ P       G
Sbjct: 586 SLAAAALVADRRWCLTGTPIQNNLEDLYSLLRFLRIEPWGTWAWWNKLVQKPFEEGDERG 645

Query: 591 YKKLQAVLRAIMLRRTK-GTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKK 649
            K +Q++L+ IMLRRTK  T  +G+PI+ LPP    +   + S+ E  FY  L   S  K
Sbjct: 646 LKLVQSILKPIMLRRTKSSTDREGRPILVLPPADARVIYCELSESERDFYDALFKRSKVK 705

Query: 650 FKAFADAGTVNQNYANILLMLLRLRQACDHPLLV------KEY-DFDSV------GKISG 696
           F  F + G V  NYA+IL +LLRLRQ CDHP LV       EY D + +      GK SG
Sbjct: 706 FDQFVEQGKVLHNYASILELLLRLRQCCDHPFLVMSRGDTAEYSDLNKLSKRFLSGKSSG 765

Query: 697 --EMAKRLPRDMLI-DLLSRL-ETSSAICCVCSDPPEDSVVTMCGHVFCYQC-ASEYITG 751
                K +P +  + +++  L +     C +C +  ED+V+T C H  C +C  + +   
Sbjct: 766 LEREGKDVPSEAFVQEVVEELRKGEQGECPICLEALEDAVLTPCAHRLCRECLLASWRNS 825

Query: 752 DDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRT 811
              +CP   C+  +    + +              +PT+S F  +  +  N   SSKI  
Sbjct: 826 TSGLCPV--CRNTVSKQELIT--------------APTESRF--QVDVEKNWVESSKITA 867

Query: 812 VLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENS 871
           +L+                  +L G   S +           KSI+FSQWT  LDL++  
Sbjct: 868 LLE------------------ELEGLRSSGS-----------KSILFSQWTAFLDLLQIP 898

Query: 872 LNQHCIQYRRLDGTMSLPARDRAVKDFNTDREVCSL 907
           L+++   + RLDGT+S   R++ +K+F+ D  +  L
Sbjct: 899 LSRNNFSFVRLDGTLSQQQREKVLKEFSEDGSILVL 934
Possesses intrinsic ATP-dependent nucleosome-remodeling activity. This activity may be required for DNA repair.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: -
>sp|Q9FIY7|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Arabidopsis thaliana GN=At5g43530 PE=3 SV=1 Back     alignment and function description
>sp|O60177|YG42_SCHPO Uncharacterized ATP-dependent helicase C23E6.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC23E6.02 PE=3 SV=1 Back     alignment and function description
>sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1 Back     alignment and function description
>sp|O13762|YF2C_SCHPO Uncharacterized ATP-dependent helicase C17A2.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17A2.12 PE=3 SV=1 Back     alignment and function description
>sp|Q4WVM1|RAD5_ASPFU DNA repair protein rad5 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rad5 PE=3 SV=2 Back     alignment and function description
>sp|Q08562|ULS1_YEAST ATP-dependent helicase ULS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ULS1 PE=1 SV=1 Back     alignment and function description
>sp|Q7S1P9|RAD5_NEUCR DNA repair protein rad-5 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rad-5 PE=3 SV=2 Back     alignment and function description
>sp|Q5BHD6|RAD5_EMENI DNA repair protein rad5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rad5 PE=3 SV=1 Back     alignment and function description
>sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query907
359484139 1013 PREDICTED: uncharacterized ATP-dependent 0.983 0.880 0.677 0.0
255544141993 DNA repair helicase rad5,16, putative [R 0.968 0.884 0.665 0.0
224095220923 chromatin remodeling complex subunit [Po 0.886 0.871 0.702 0.0
356574101 1027 PREDICTED: ATP-dependent helicase ULS1-l 0.966 0.853 0.618 0.0
356534462975 PREDICTED: putative SWI/SNF-related matr 0.932 0.867 0.634 0.0
449464954 1015 PREDICTED: uncharacterized ATP-dependent 0.961 0.859 0.601 0.0
297742732907 unnamed protein product [Vitis vinifera] 0.867 0.867 0.580 0.0
18403061981 SNF2 and helicase domain-containing prot 0.914 0.845 0.561 0.0
297847386980 SNF2 domain-containing protein [Arabidop 0.907 0.839 0.555 0.0
297830680 1046 SNF2 domain-containing protein [Arabidop 0.852 0.739 0.566 0.0
>gi|359484139|ref|XP_002267403.2| PREDICTED: uncharacterized ATP-dependent helicase C23E6.02-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1167 bits (3018), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 623/919 (67%), Positives = 727/919 (79%), Gaps = 27/919 (2%)

Query: 4   ISPIDISSSDSDLDIG----ESDTSETRQS---GNVRILPPWATKAAVNARTGYGGQSQK 56
           + PIDI+SS           E+DTS   +S    N RILPPW + +  N+++   G  QK
Sbjct: 1   MDPIDITSSSDSDFDFEDDRETDTSPVGESVAFANSRILPPWPSTSGTNSKSTSHGHFQK 60

Query: 57  VPSFERSYASNGSSSNANSYSQEKLQMLPGFSDDHQMSNG---QADDSHYLSGNKNV--- 110
           VPS +R+ ASNGSSSN   Y   K+QM P F DD + SN    +  D +Y + N ++   
Sbjct: 61  VPSPKRASASNGSSSNFYHYP-PKIQMHPSFDDDIRASNRHNFREADFNYSTENGDMLDV 119

Query: 111 -GQLQTVNPRIANVASADYEKISSQQALKRTLPAFPQPHSLNTKSKSSVENMNSSQIRDT 169
               Q +N   A++  ADYEK+S Q A++RTLP+  QP + +    ++V N+ SS I D+
Sbjct: 120 ENHQQLINLNKADIFGADYEKLS-QPAMRRTLPSTLQPSAPSAGMNNTVGNIGSSHIHDS 178

Query: 170 FGNAYHLAGPSTVNSKGYIRDYYVKKNDDDIMMYE--GNRILPSSLMHGKSVSMTQFGGP 227
            G ++H  GP  +N+  Y+++++ + NDD+++MYE  G+RILP SLMHGKSV  TQ+GG 
Sbjct: 179 QGKSFHPVGP-ILNNMNYMKEHFGRGNDDEVIMYENSGSRILPPSLMHGKSVPSTQYGGV 237

Query: 228 SDLAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWML 287
           S+ AYR G A+E A   DERL+YQAAL+DLNQPKVEATLPDGLL+V+LL+HQKIALAWM 
Sbjct: 238 SESAYRPGVAEEMAANTDERLVYQAALQDLNQPKVEATLPDGLLTVSLLRHQKIALAWMH 297

Query: 288 QKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDD 347
           QKETRSLHCLGGILADDQGLGKT+S+IALIQMQ+SLQSKSK+E L N  TEALNLDDDDD
Sbjct: 298 QKETRSLHCLGGILADDQGLGKTVSMIALIQMQKSLQSKSKSEELHNHSTEALNLDDDDD 357

Query: 348 NGNA-GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDK 406
           N NA G DK K+T E+ D KP+ EVS S   F RRRPAAGTLVVCPASVLRQWAREL++K
Sbjct: 358 NANAAGSDKGKQTEETSDSKPISEVSASLPEFRRRRPAAGTLVVCPASVLRQWARELDEK 417

Query: 407 VPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETY 466
           V ++A LSV +YHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQP VD++E DE+NGE Y
Sbjct: 418 VSEEAKLSVCLYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPLVDDDEGDERNGEKY 477

Query: 467 GLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNH 526
           GLSSEFSVNKKRKK SNVSKRGKKG+KG  +SSIDY CGPLA+VGWFRV+LDEAQTIKNH
Sbjct: 478 GLSSEFSVNKKRKKPSNVSKRGKKGRKGIDSSSIDYDCGPLARVGWFRVILDEAQTIKNH 537

Query: 527 RTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRN 586
           RTQVARACCSLRAKRRWCLSGTPIQN+IDDLYSYFRFLKYDPYAVYKSFY+TIK+PISRN
Sbjct: 538 RTQVARACCSLRAKRRWCLSGTPIQNAIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRN 597

Query: 587 SLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDS 646
           S+HGYKKLQAVLRAIMLRRTKGT IDG PIINLPPKTI L+KVDFS EE AFY KLE+DS
Sbjct: 598 SVHGYKKLQAVLRAIMLRRTKGTLIDGTPIINLPPKTICLSKVDFSSEERAFYSKLEADS 657

Query: 647 LKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDM 706
             +FK +A AGTVNQNYANILLMLLRLRQACDHPLLVK Y+ DS+ K+S EMAK+LP D+
Sbjct: 658 RSQFKEYAAAGTVNQNYANILLMLLRLRQACDHPLLVKGYNTDSIRKVSSEMAKKLPSDI 717

Query: 707 LIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLG 766
           LI+LL  LET SAIC VC+DPPED+VVTMCGHVFCYQC SEY+TGDDN CPA  CKEQLG
Sbjct: 718 LINLLDILET-SAICRVCNDPPEDAVVTMCGHVFCYQCVSEYLTGDDNTCPALECKEQLG 776

Query: 767 ADVVFSKTTLKNCVSDDGGGSPTDSP-FADKSGILDNEYISSKIRTVLDILHTQCELNTK 825
           ADVVFSK TL +C+SD+  GS ++S   A+KS  L NEY SSKIR  L+IL + C+L + 
Sbjct: 777 ADVVFSKATLISCISDELDGSLSNSSQSAEKSINLQNEYSSSKIRAALEILQSHCKLTSP 836

Query: 826 CSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 885
            S  + H   G NGS   +S    EGPIK+IVFSQWT MLDLVE S+N  CIQYRRLDGT
Sbjct: 837 DS--DPHSSMGCNGS---YSNPETEGPIKAIVFSQWTSMLDLVEMSMNHSCIQYRRLDGT 891

Query: 886 MSLPARDRAVKDFNTDREV 904
           MSL +RDRAVKDFNTD EV
Sbjct: 892 MSLASRDRAVKDFNTDPEV 910

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255544141|ref|XP_002513133.1| DNA repair helicase rad5,16, putative [Ricinus communis] gi|223548144|gb|EEF49636.1| DNA repair helicase rad5,16, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224095220|ref|XP_002310362.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222853265|gb|EEE90812.1| chromatin remodeling complex subunit [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356574101|ref|XP_003555190.1| PREDICTED: ATP-dependent helicase ULS1-like [Glycine max] Back     alignment and taxonomy information
>gi|356534462|ref|XP_003535773.1| PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3-like [Glycine max] Back     alignment and taxonomy information
>gi|449464954|ref|XP_004150194.1| PREDICTED: uncharacterized ATP-dependent helicase C23E6.02-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297742732|emb|CBI35366.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|18403061|ref|NP_564568.1| SNF2 and helicase domain-containing protein [Arabidopsis thaliana] gi|14532630|gb|AAK64043.1| putative DNA-binding protein [Arabidopsis thaliana] gi|23296945|gb|AAN13207.1| putative DNA-binding protein [Arabidopsis thaliana] gi|332194424|gb|AEE32545.1| SNF2 and helicase domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297847386|ref|XP_002891574.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297337416|gb|EFH67833.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297830680|ref|XP_002883222.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297329062|gb|EFH59481.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query907
TAIR|locus:2008096981 AT1G50410 [Arabidopsis thalian 0.845 0.781 0.582 5.3e-230
TAIR|locus:20953601047 AT3G20010 [Arabidopsis thalian 0.575 0.498 0.615 8.6e-219
TAIR|locus:2008470 1280 EDA16 "embryo sac development 0.754 0.534 0.495 5.1e-164
TAIR|locus:2089318638 AT3G16600 [Arabidopsis thalian 0.113 0.161 0.718 1e-121
POMBASE|SPBC23E6.02 1040 rrp2 "ATP-dependent DNA helica 0.432 0.376 0.314 9.3e-68
ASPGD|ASPL0000030172 1184 AN5483 [Emericella nidulans (t 0.264 0.202 0.387 7.4e-66
TAIR|locus:21625041029 RAD5 [Arabidopsis thaliana (ta 0.191 0.169 0.474 1.7e-61
ZFIN|ZDB-GENE-030131-3306942 hltf "helicase-like transcript 0.288 0.278 0.350 2.3e-60
POMBASE|SPAC17A2.12897 rrp1 "ATP-dependent DNA helica 0.298 0.302 0.354 4.2e-60
TAIR|locus:21583571277 AT5G43530 [Arabidopsis thalian 0.319 0.227 0.342 1.3e-59
TAIR|locus:2008096 AT1G50410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2219 (786.2 bits), Expect = 5.3e-230, P = 5.3e-230
 Identities = 478/821 (58%), Positives = 564/821 (68%)

Query:   111 GQLQTVNPRIANVASADYEKISSQQALKRTLP-AFPQPHSLNTKSKSSVENMNSSQIRDT 169
             G    V  RI N++  DYEK SSQQA KRT P  F +P     +      N N+S  R  
Sbjct:    85 GNGSIVTSRIPNISVGDYEKFSSQQAFKRTHPPTFSRP-PFPPRPDIGTSNGNASHFR-- 141

Query:   170 FGNAYHLAGPSTVNSKGYIRDYYVKKNDDDIMMYEGNRILPSSLMHGKSVSMTQFGGPSD 229
              G A+   G   V +                    G RILP S+ HG S S + F G SD
Sbjct:   142 -GGAHDDLGMGRVTN--------------------GTRILPPSVAHGTSASPSHFNGLSD 180

Query:   230 LAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQK 289
               +R+G  +ER    DERLIYQAAL++LNQPK E  LP GLLSV L+KHQKIALAWM QK
Sbjct:   181 PMHRNGIGEERNSENDERLIYQAALQELNQPKSEVDLPAGLLSVPLMKHQKIALAWMFQK 240

Query:   290 ETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEXXXXXXXXXXX 349
             ET SLHC+GGILADDQGLGKT+S IALI  Q   ++K K++  GNQ+ E           
Sbjct:   241 ETNSLHCMGGILADDQGLGKTVSTIALILKQMH-EAKLKSKNSGNQEAEALDLDADDESE 299

Query:   350 XXXX---XKVKE-TGESDD--IKPVP--EVXXXXXXXXXXXPAAGTLVVCPASVLRQWAR 401
                     K    +G + D  IK     E            PAAGTL+VCPASV+RQWAR
Sbjct:   300 NAFEKPESKASNGSGVNGDSGIKKAKGEEASTSTRKFNRKRPAAGTLIVCPASVVRQWAR 359

Query:   402 ELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEK 461
             EL++KV D+A LSVLIYHGG+RTKDP+ELAKYDVV+TTY+IV+NEVPKQP VD++E DEK
Sbjct:   360 ELDEKVTDEAKLSVLIYHGGNRTKDPIELAKYDVVMTTYAIVSNEVPKQPLVDDDENDEK 419

Query:   462 NGETYGLSSEFSVNKKRKKIXXXXXXXXXXXXXXXXX-XIDYGCGPLAKVGWFRVVLDEA 520
             N E YGL+S FS+NKKRK +                    D   G LAKVGWFRVVLDEA
Sbjct:   420 NSEKYGLASGFSINKKRKNVVGTTKKSKKKKGNNNAGDSSDPDSGTLAKVGWFRVVLDEA 479

Query:   521 QTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIK 580
             QTIKNHRTQVARACC LRAKRRWCLSGTPIQN+IDDLYSYFRFLKYDPYAVYKSF   IK
Sbjct:   480 QTIKNHRTQVARACCGLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFCHQIK 539

Query:   581 IPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYK 640
              PISRNSL GYKKLQAVLRAIMLRRTKGT +DGQPIINLPPKTI+L++VDFS EE +FY 
Sbjct:   540 GPISRNSLQGYKKLQAVLRAIMLRRTKGTLLDGQPIINLPPKTINLSQVDFSVEERSFYV 599

Query:   641 KLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAK 700
             KLESDS  +FKA+A AGT+NQNYANILLMLLRLRQACDHP LVK Y+ DSVGK+S E  K
Sbjct:   600 KLESDSRSQFKAYAAAGTLNQNYANILLMLLRLRQACDHPQLVKRYNSDSVGKVSEEAVK 659

Query:   701 RLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPR 760
             +LP++ L+ LLSRLE SS ICCVC DPPED VVT+CGH+FCYQC S+YITGD++ CPAPR
Sbjct:   660 KLPKEDLVSLLSRLE-SSPICCVCHDPPEDPVVTLCGHIFCYQCVSDYITGDEDTCPAPR 718

Query:   761 CKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQC 820
             C+EQL  DVVFSK+TL++CV+DD G S ++    DKS   + E+ SSKI+ VLDIL +  
Sbjct:   719 CREQLAHDVVFSKSTLRSCVADDLGCSSSEDNSHDKSVFQNGEFSSSKIKAVLDILQSLS 778

Query:   821 ELNTKCSIVEIHDLAGSNGSS-----------AVHSKSPIE------GPIKSIVFSQWTR 863
                T  S  +   +A S+               +  K+ ++      GPIK+I+FSQWT 
Sbjct:   779 NQGTSNS-TQNGQMASSSQQPNDDDDDDDDDVTIVEKTSLKSTPSNGGPIKTIIFSQWTG 837

Query:   864 MLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
             MLDLVE SL ++ I++RRLDGTMSL ARDRAVK+F+ D +V
Sbjct:   838 MLDLVELSLIENSIEFRRLDGTMSLIARDRAVKEFSNDPDV 878
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0004386 "helicase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA;ISS
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
GO:0006487 "protein N-linked glycosylation" evidence=RCA
GO:0006816 "calcium ion transport" evidence=RCA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
TAIR|locus:2095360 AT3G20010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008470 EDA16 "embryo sac development arrest 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089318 AT3G16600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPBC23E6.02 rrp2 "ATP-dependent DNA helicase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000030172 AN5483 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TAIR|locus:2162504 RAD5 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3306 hltf "helicase-like transcription factor" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
POMBASE|SPAC17A2.12 rrp1 "ATP-dependent DNA helicase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
TAIR|locus:2158357 AT5G43530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4.12LOW CONFIDENCE prediction!
3rd Layer3.6.40.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
CHR934
chromatin remodeling complex subunit (923 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query907
pfam00176301 pfam00176, SNF2_N, SNF2 family N-terminal domain 4e-51
COG0553866 COG0553, HepA, Superfamily II DNA/RNA helicases, S 3e-36
PLN03142 1033 PLN03142, PLN03142, Probable chromatin-remodeling 5e-12
smart00487201 smart00487, DEXDc, DEAD-like helicases superfamily 9e-11
smart0018440 smart00184, RING, Ring finger 9e-09
pfam1392345 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI 2e-08
cd0016245 cd00162, RING, RING-finger (Really Interesting New 2e-08
pfam00176301 pfam00176, SNF2_N, SNF2 family N-terminal domain 8e-08
COG0553866 COG0553, HepA, Superfamily II DNA/RNA helicases, S 2e-06
pfam1363946 pfam13639, zf-RING_2, Ring finger domain 5e-06
pfam0009740 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING 7e-05
pfam1392049 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI 8e-05
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 0.001
COG5574271 COG5574, PEX10, RING-finger-containing E3 ubiquiti 0.001
PLN03208193 PLN03208, PLN03208, E3 ubiquitin-protein ligase RM 0.002
PLN03142 1033 PLN03142, PLN03142, Probable chromatin-remodeling 0.004
>gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain Back     alignment and domain information 
 Score =  181 bits (461), Expect = 4e-51
 Identities = 89/313 (28%), Positives = 139/313 (44%), Gaps = 78/313 (24%)

Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE------LAKYDVVLTTY 440
           TLVVCP S L  W  E E   P   AL V++YHG  R +  +       L  YDVV+TTY
Sbjct: 51  TLVVCPLSTLHNWLNEFEKWAP---ALRVVVYHGDGRERSKLRQSMAKRLDTYDVVITTY 107

Query: 441 SIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSI 500
            ++  +                               +K +S ++K              
Sbjct: 108 EVLRKD-------------------------------KKLLSLLNK-------------- 122

Query: 501 DYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSY 560
                    V W RVVLDEA  +KN ++++ +A   L+ + R  L+GTPIQN++++L++ 
Sbjct: 123 ---------VEWDRVVLDEAHRLKNSKSKLYKALKKLKTRNRLLLTGTPIQNNLEELWAL 173

Query: 561 FRFLKYDPYAVYKSFYSTIKIPISRNSLH----------GYKKLQAVLRAIMLRRTKGTF 610
             FL+  P+  +K F     IPI+  + +          G  +L  +L+  +LRRTK   
Sbjct: 174 LNFLRPGPFGSFKVFEEWFNIPIANTADNKNKNLEKGKEGINRLHKLLKPFLLRRTKDDV 233

Query: 611 IDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLML 670
                   LPPKT  +   + S E+   YKKL +          + G  N   A++L ++
Sbjct: 234 EKS-----LPPKTEHVLYCNLSDEQRKLYKKLLTKRRLALSFAVEGGEKNVGIASLLNLI 288

Query: 671 LRLRQACDHPLLV 683
           ++LR+ C+HP L 
Sbjct: 289 MQLRKICNHPYLF 301

This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g. ERCC6, RAD16, RAD5), DNA recombination (e.g. RAD54), and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar, ETL1). Length = 301
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|214546 smart00184, RING, Ring finger Back     alignment and domain information
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain Back     alignment and domain information
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain Back     alignment and domain information
>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|227861 COG5574, PEX10, RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|178747 PLN03208, PLN03208, E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 907
KOG1002791 consensus Nucleotide excision repair protein RAD16 100.0
KOG0385 971 consensus Chromatin remodeling complex WSTF-ISWI, 100.0
KOG0387 923 consensus Transcription-coupled repair protein CSB 100.0
KOG4439901 consensus RNA polymerase II transcription terminat 100.0
KOG0389 941 consensus SNF2 family DNA-dependent ATPase [Chroma 100.0
KOG0392 1549 consensus SNF2 family DNA-dependent ATPase domain- 100.0
KOG1001674 consensus Helicase-like transcription factor HLTF/ 100.0
PLN03142 1033 Probable chromatin-remodeling complex ATPase chain 100.0
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 100.0
KOG0384 1373 consensus Chromodomain-helicase DNA-binding protei 100.0
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 100.0
KOG0386 1157 consensus Chromatin remodeling complex SWI/SNF, co 100.0
KOG0390 776 consensus DNA repair protein, SNF2 family [Replica 100.0
KOG1015 1567 consensus Transcription regulator XNP/ATRX, DEAD-b 100.0
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 100.0
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 100.0
KOG1016 1387 consensus Predicted DNA helicase, DEAD-box superfa 100.0
KOG1000 689 consensus Chromatin remodeling protein HARP/SMARCA 100.0
PRK04914 956 ATP-dependent helicase HepA; Validated 100.0
KOG0383696 consensus Predicted helicase [General function pre 100.0
KOG0298 1394 consensus DEAD box-containing helicase-like transc 100.0
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 99.95
PRK13766 773 Hef nuclease; Provisional 99.88
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.79
COG1111 542 MPH1 ERCC4-like helicases [DNA replication, recomb 99.73
PHA02558 501 uvsW UvsW helicase; Provisional 99.72
KOG1123776 consensus RNA polymerase II transcription initiati 99.66
smart00487201 DEXDc DEAD-like helicases superfamily. 99.44
PF04851184 ResIII: Type III restriction enzyme, res subunit; 99.44
PTZ00110 545 helicase; Provisional 99.4
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 99.39
PRK11448 1123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.39
KOG0354 746 consensus DEAD-box like helicase [General function 99.35
PRK11776 460 ATP-dependent RNA helicase DbpA; Provisional 99.3
PRK11192 434 ATP-dependent RNA helicase SrmB; Provisional 99.26
TIGR00643630 recG ATP-dependent DNA helicase RecG. 99.24
PRK11634 629 ATP-dependent RNA helicase DeaD; Provisional 99.23
TIGR00614 470 recQ_fam ATP-dependent DNA helicase, RecQ family. 99.21
PRK10590 456 ATP-dependent RNA helicase RhlE; Provisional 99.2
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 99.2
PRK04837 423 ATP-dependent RNA helicase RhlB; Provisional 99.19
PRK10689 1147 transcription-repair coupling factor; Provisional 99.19
PRK04537 572 ATP-dependent RNA helicase RhlB; Provisional 99.18
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 99.17
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 99.16
TIGR00580 926 mfd transcription-repair coupling factor (mfd). Al 99.16
KOG0331 519 consensus ATP-dependent RNA helicase [RNA processi 99.14
TIGR01389 591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 99.13
PTZ00424401 helicase 45; Provisional 99.13
PRK11057 607 ATP-dependent DNA helicase RecQ; Provisional 99.1
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 99.01
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 98.97
TIGR03714 762 secA2 accessory Sec system translocase SecA2. Memb 98.94
PRK02362 737 ski2-like helicase; Provisional 98.92
PRK13767 876 ATP-dependent helicase; Provisional 98.83
COG4096 875 HsdR Type I site-specific restriction-modification 98.81
PF13872303 AAA_34: P-loop containing NTP hydrolase pore-1 98.8
PLN03137 1195 ATP-dependent DNA helicase; Q4-like; Provisional 98.79
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 98.77
TIGR03817 742 DECH_helic helicase/secretion neighborhood putativ 98.75
PRK09401 1176 reverse gyrase; Reviewed 98.74
COG1200677 RecG RecG-like helicase [DNA replication, recombin 98.7
PRK09200 790 preprotein translocase subunit SecA; Reviewed 98.63
COG0513 513 SrmB Superfamily II DNA and RNA helicases [DNA rep 98.63
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 98.6
PRK01172674 ski2-like helicase; Provisional 98.59
PRK00254 720 ski2-like helicase; Provisional 98.53
PRK12898 656 secA preprotein translocase subunit SecA; Reviewed 98.52
PRK13104 896 secA preprotein translocase subunit SecA; Reviewed 98.51
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 98.5
TIGR02621 844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 98.45
COG1204 766 Superfamily II helicase [General function predicti 98.44
TIGR00963 745 secA preprotein translocase, SecA subunit. The pro 98.44
PRK14701 1638 reverse gyrase; Provisional 98.26
PHA02653 675 RNA helicase NPH-II; Provisional 98.25
PRK05580679 primosome assembly protein PriA; Validated 98.25
COG1201 814 Lhr Lhr-like helicases [General function predictio 98.25
COG1205 851 Distinct helicase family with a unique C-terminal 98.23
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 98.21
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 98.2
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 98.18
PRK12904 830 preprotein translocase subunit SecA; Reviewed 98.18
PRK13107 908 preprotein translocase subunit SecA; Reviewed 98.12
KOG0339 731 consensus ATP-dependent RNA helicase [RNA processi 98.08
KOG0330 476 consensus ATP-dependent RNA helicase [RNA processi 98.06
PF11496 297 HDA2-3: Class II histone deacetylase complex subun 98.02
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 97.99
TIGR00595505 priA primosomal protein N'. All proteins in this f 97.97
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 97.94
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 97.93
COG4889 1518 Predicted helicase [General function prediction on 97.91
KOG0320187 consensus Predicted E3 ubiquitin ligase [Posttrans 97.91
KOG0823230 consensus Predicted E3 ubiquitin ligase [Posttrans 97.9
PRK12906 796 secA preprotein translocase subunit SecA; Reviewed 97.84
smart0050463 Ubox Modified RING finger domain. Modified RING fi 97.83
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 97.82
TIGR01970 819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 97.78
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 97.77
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 97.73
COG11971139 Mfd Transcription-repair coupling factor (superfam 97.7
KOG4284 980 consensus DEAD box protein [Transcription] 97.7
PRK11664 812 ATP-dependent RNA helicase HrpB; Provisional 97.64
KOG0317293 consensus Predicted E3 ubiquitin ligase, integral 97.63
KOG0348 708 consensus ATP-dependent RNA helicase [RNA processi 97.63
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 97.6
KOG0343 758 consensus RNA Helicase [RNA processing and modific 97.56
KOG0338 691 consensus ATP-dependent RNA helicase [RNA processi 97.55
PRK12326 764 preprotein translocase subunit SecA; Reviewed 97.53
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 97.49
KOG2164 513 consensus Predicted E3 ubiquitin ligase [Posttrans 97.49
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 97.43
COG0610 962 Type I site-specific restriction-modification syst 97.43
KOG0336 629 consensus ATP-dependent RNA helicase [RNA processi 97.4
KOG0342 543 consensus ATP-dependent RNA helicase pitchoune [RN 97.39
PRK12900 1025 secA preprotein translocase subunit SecA; Reviewed 97.39
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 97.31
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 97.3
COG0514 590 RecQ Superfamily II DNA helicase [DNA replication, 97.29
PHA02929238 N1R/p28-like protein; Provisional 97.25
TIGR00599 397 rad18 DNA repair protein rad18. This family is bas 97.23
PRK15483 986 type III restriction-modification system StyLTI en 97.2
COG1202 830 Superfamily II helicase, archaea-specific [General 97.14
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 97.07
KOG0298 1394 consensus DEAD box-containing helicase-like transc 97.02
PRK12899 970 secA preprotein translocase subunit SecA; Reviewed 97.0
PRK09694878 helicase Cas3; Provisional 96.97
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 96.89
COG5574271 PEX10 RING-finger-containing E3 ubiquitin ligase [ 96.89
PF1344543 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. 96.87
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 96.85
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 96.85
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 96.81
cd0016245 RING RING-finger (Really Interesting New Gene) dom 96.8
KOG1513 1300 consensus Nuclear helicase MOP-3/SNO (DEAD-box sup 96.79
PHA02926242 zinc finger-like protein; Provisional 96.79
PF1463444 zf-RING_5: zinc-RING finger domain 96.77
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 96.76
COG5432 391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 96.75
TIGR01407 850 dinG_rel DnaQ family exonuclease/DinG family helic 96.73
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 96.66
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 96.5
KOG0287 442 consensus Postreplication repair protein RAD18 [Re 96.48
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 96.37
COG4098441 comFA Superfamily II DNA/RNA helicase required for 96.35
COG4581 1041 Superfamily II RNA helicase [DNA replication, reco 96.29
PRK13103 913 secA preprotein translocase subunit SecA; Reviewed 96.29
smart00488289 DEXDc2 DEAD-like helicases superfamily. 96.25
smart00489289 DEXDc3 DEAD-like helicases superfamily. 96.25
TIGR00570 309 cdk7 CDK-activating kinase assembly factor MAT1. A 96.2
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 96.2
TIGR00596 814 rad1 DNA repair protein (rad1). This family is bas 96.2
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 96.12
KOG0824 324 consensus Predicted E3 ubiquitin ligase [Posttrans 96.07
KOG1785563 consensus Tyrosine kinase negative regulator CBL [ 95.74
KOG0947 1248 consensus Cytoplasmic exosomal RNA helicase SKI2, 95.73
KOG417262 consensus Predicted E3 ubiquitin ligase [Posttrans 95.69
PRK12902 939 secA preprotein translocase subunit SecA; Reviewed 95.59
KOG2879298 consensus Predicted E3 ubiquitin ligase [Posttrans 95.58
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 95.31
KOG0311 381 consensus Predicted E3 ubiquitin ligase [Posttrans 95.3
CHL00122 870 secA preprotein translocase subunit SecA; Validate 95.22
KOG1802935 consensus RNA helicase nonsense mRNA reducing fact 95.19
PRK10536262 hypothetical protein; Provisional 95.04
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 95.04
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 94.89
COG5540374 RING-finger-containing ubiquitin ligase [Posttrans 94.62
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 94.56
PF1267873 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 94.23
KOG2177 386 consensus Predicted E3 ubiquitin ligase [Posttrans 94.21
TIGR00631 655 uvrb excinuclease ABC, B subunit. This family is b 93.88
PRK12903 925 secA preprotein translocase subunit SecA; Reviewed 93.86
PRK05298 652 excinuclease ABC subunit B; Provisional 93.83
COG5222427 Uncharacterized conserved protein, contains RING Z 93.57
KOG0948 1041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 93.56
KOG2660 331 consensus Locus-specific chromosome binding protei 93.44
COG3587 985 Restriction endonuclease [Defense mechanisms] 93.32
PRK07246 820 bifunctional ATP-dependent DNA helicase/DNA polyme 93.25
KOG0334 997 consensus RNA helicase [RNA processing and modific 93.16
PRK14873665 primosome assembly protein PriA; Provisional 92.85
TIGR00376637 DNA helicase, putative. The gene product may repre 92.83
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 92.8
KOG0802543 consensus E3 ubiquitin ligase [Posttranslational m 92.42
KOG0341 610 consensus DEAD-box protein abstrakt [RNA processin 92.41
COG5152259 Uncharacterized conserved protein, contains RING a 92.31
PRK08074 928 bifunctional ATP-dependent DNA helicase/DNA polyme 92.28
KOG0826357 consensus Predicted E3 ubiquitin ligase involved i 91.7
KOG1132 945 consensus Helicase of the DEAD superfamily [Replic 91.65
PHA02533534 17 large terminase protein; Provisional 91.44
COG5243491 HRD1 HRD ubiquitin ligase complex, ER membrane com 90.9
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 90.75
KOG0353695 consensus ATP-dependent DNA helicase [General func 90.73
KOG4159 398 consensus Predicted E3 ubiquitin ligase [Posttrans 90.67
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 90.63
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 90.54
KOG0828636 consensus Predicted E3 ubiquitin ligase [Posttrans 90.34
KOG0340 442 consensus ATP-dependent RNA helicase [RNA processi 90.09
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 89.86
KOG4692489 consensus Predicted E3 ubiquitin ligase [Posttrans 89.63
COG5220 314 TFB3 Cdk activating kinase (CAK)/RNA polymerase II 89.62
smart0049082 HELICc helicase superfamily c-terminal domain. 89.37
KOG1803649 consensus DNA helicase [Replication, recombination 89.28
KOG4265349 consensus Predicted E3 ubiquitin ligase [Posttrans 89.21
COG0556 663 UvrB Helicase subunit of the DNA excision repair c 88.96
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 88.91
KOG1131 755 consensus RNA polymerase II transcription initiati 88.82
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 88.72
KOG0347731 consensus RNA helicase [RNA processing and modific 88.54
KOG0297 391 consensus TNF receptor-associated factor [Signal t 88.01
PF1444755 Prok-RING_4: Prokaryotic RING finger family 4 87.22
COG1198730 PriA Primosomal protein N' (replication factor Y) 87.15
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 87.13
KOG4739233 consensus Uncharacterized protein involved in syna 86.92
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 86.74
KOG1039344 consensus Predicted E3 ubiquitin ligase [Posttrans 86.27
PRK12901 1112 secA preprotein translocase subunit SecA; Reviewed 86.22
PRK04296190 thymidine kinase; Provisional 86.19
KOG3039303 consensus Uncharacterized conserved protein [Funct 86.02
PRK10875615 recD exonuclease V subunit alpha; Provisional 85.86
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 85.6
KOG1814445 consensus Predicted E3 ubiquitin ligase [Posttrans 84.44
KOG3039303 consensus Uncharacterized conserved protein [Funct 83.76
PF02399 824 Herpes_ori_bp: Origin of replication binding prote 83.2
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 83.11
KOG3800 300 consensus Predicted E3 ubiquitin ligase containing 83.05
PF06733174 DEAD_2: DEAD_2; InterPro: IPR010614 This represent 82.29
PF1457048 zf-RING_4: RING/Ubox like zinc-binding domain; PDB 81.55
PF05876557 Terminase_GpA: Phage terminase large subunit (GpA) 80.68
KOG0337529 consensus ATP-dependent RNA helicase [RNA processi 80.11
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-82  Score=687.45  Aligned_cols=480  Identities=39%  Similarity=0.627  Sum_probs=392.7

Q ss_pred             ccCCCCCcccccCchHHHHHHHHHHHhhhccccccCceeecCCCCchHHHHHHHHHHhhhccccchhhhccccccccccC
Q 002565          263 EATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNL  342 (907)
Q Consensus       263 ~~~~P~~~l~~~L~phQ~~gv~wml~~e~~~~~~~GGILADeMGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~  342 (907)
                      .+.+|.++ .++|+|||++||+|+..+|.+.  ..|||||||||+|||||+|||++..                      
T Consensus       174 ~aeqP~dl-ii~LL~fQkE~l~Wl~~QE~Ss--~~GGiLADEMGMGKTIQtIaLllae----------------------  228 (791)
T KOG1002|consen  174 RAEQPDDL-IIPLLPFQKEGLAWLTSQEESS--VAGGILADEMGMGKTIQTIALLLAE----------------------  228 (791)
T ss_pred             cccCcccc-eecchhhhHHHHHHHHHhhhhh--hccceehhhhccchHHHHHHHHHhc----------------------
Confidence            45667774 6899999999999999999865  4899999999999999999999742                      


Q ss_pred             CCCCCCCCcCcccccccCCCCCCCCCCCcccccccccCCCCCCCeEEEeChhhHHHHHHHHHHhCCCCCCeEEEEEeCCC
Q 002565          343 DDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS  422 (907)
Q Consensus       343 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sll~qW~~Ei~k~~~~~~~l~V~v~~G~~  422 (907)
                                                             ...++||||||...+.||.+||.+|..+  .++|++|||..
T Consensus       229 ---------------------------------------~~ra~tLVvaP~VAlmQW~nEI~~~T~g--slkv~~YhG~~  267 (791)
T KOG1002|consen  229 ---------------------------------------VDRAPTLVVAPTVALMQWKNEIERHTSG--SLKVYIYHGAK  267 (791)
T ss_pred             ---------------------------------------cccCCeeEEccHHHHHHHHHHHHHhccC--ceEEEEEeccc
Confidence                                                   1124599999999999999999999874  89999999999


Q ss_pred             CCCCccccCCCcEEEecchhhcccCCCCCCCchhHhhhhcccccCCcchhhhhhhhhccccccccccCCCCCCCCCCccc
Q 002565          423 RTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDY  502 (907)
Q Consensus       423 r~~~~~~l~~~dVVItTY~~l~~e~~~~~~~~~~~~~~k~~~~~~~~~~f~~~~~~k~~~~~~kk~~~~~k~~~~~~~d~  502 (907)
                      |.++..++..||||+|||.++.+.++++.              ||    |            .      ||    ...+.
T Consensus       268 R~~nikel~~YDvVLTty~vvEs~yRk~~--------------~G----f------------r------rK----ngv~k  307 (791)
T KOG1002|consen  268 RDKNIKELMNYDVVLTTYAVVESVYRKQD--------------YG----F------------R------RK----NGVDK  307 (791)
T ss_pred             ccCCHHHhhcCcEEEEecHHHHHHHHhcc--------------cc----c------------c------cc----CCccc
Confidence            99999999999999999999998876521              11    0            0      00    12233


Q ss_pred             CCCCcccccccEEEEccCcccCCcchHHHHHHHhhhcCceEEEeccCcccchhhhhhhHHhhccCCCCch----------
Q 002565          503 GCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVY----------  572 (907)
Q Consensus       503 ~~~~L~~~~w~rVIlDEAH~IKN~~S~~~ka~~~L~a~~R~~LTGTPiqN~l~EL~sll~fL~p~~~~~~----------  572 (907)
                      ..++|+.+.|.||||||||.||++.+.+++|+++|++.+||||||||+||++.|||+|++||+.+||..|          
T Consensus       308 e~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~  387 (791)
T KOG1002|consen  308 EKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASL  387 (791)
T ss_pred             ccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhcccccc
Confidence            4578999999999999999999999999999999999999999999999999999999999999988432          


Q ss_pred             ---------------------HHHHhHhccccccC-----chhhHHHHHHHHHHHHhhhccccccCCCCccCCCCCeEEE
Q 002565          573 ---------------------KSFYSTIKIPISRN-----SLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL  626 (907)
Q Consensus       573 ---------------------~~F~~~~~~pi~~~-----~~~~~~~L~~lL~~~mLRRtK~dv~~g~p~l~LP~k~~~~  626 (907)
                                           -.|....-+||.+.     +...+...+.+|..+|+||||-.-.+   -+.|||+++.+
T Consensus       388 ~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAd---DLgLPPRiv~v  464 (791)
T KOG1002|consen  388 DWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERAD---DLGLPPRIVTV  464 (791)
T ss_pred             ceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhccccc---ccCCCccceee
Confidence                                 12333344566553     23456678999999999999965433   26899999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCccccccccccccccchHHHhhcCChhH
Q 002565          627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDM  706 (907)
Q Consensus       627 v~v~lS~~Er~lY~~l~~~~~~~~~~~~~~g~~~~~~~~iL~~L~rLRqic~hP~L~~~~~~~~~~~~~~e~~~~l~~e~  706 (907)
                      ..--|+.+|..+|+.+....+..|..|..+|.+..||++||.+|+||||++.||.|+.....           ..++.+ 
T Consensus       465 RrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~-----------~n~~~e-  532 (791)
T KOG1002|consen  465 RRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSAN-----------ANLPDE-  532 (791)
T ss_pred             ehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhh-----------cCCCcc-
Confidence            99999999999999999999999999999999999999999999999999999999875211           111111 


Q ss_pred             HHHHHHhhhcccccccccCCCCCCccccccCcccchhhhhhhccC----CCCCCCCcccccccCccccccccccccccCC
Q 002565          707 LIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITG----DDNMCPAPRCKEQLGADVVFSKTTLKNCVSD  782 (907)
Q Consensus       707 ~~~ll~~le~~~~~C~iC~d~~e~pvit~C~H~fC~~Ci~~~i~~----~~~~CP~~~Cr~~l~~~~~~~~~~l~~~~~d  782 (907)
                              ..+..+|.+|.|+.++++++.|.|.||+.|+.+|+.+    ..-+||  .|...|..+...+...  ...  
T Consensus       533 --------nk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP--~C~i~LsiDlse~ale--k~~--  598 (791)
T KOG1002|consen  533 --------NKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCP--VCHIGLSIDLSEPALE--KTD--  598 (791)
T ss_pred             --------ccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCc--cccccccccccchhhh--hcc--
Confidence                    0245789999999999999999999999999998752    334788  5888887764322111  000  


Q ss_pred             CCCCCCCCCcccccCCCcCCCccchhHHHHHHHHHHhhhccCCcchhhhhcccCCCCCCcccCCCCCCCCceEEEEecch
Q 002565          783 DGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWT  862 (907)
Q Consensus       783 ~~~~~~~~~~~~~~~~~~~~~~~SsKi~aLlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVIVFSQft  862 (907)
                        -..-..+ ..-..+.+..|..|+|+++|.+.|..+++.+.                           ..|.|||||||
T Consensus       599 --l~~Fk~s-SIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~---------------------------t~KsIVFSQFT  648 (791)
T KOG1002|consen  599 --LKGFKAS-SILNRINMDDWQSSTKIEALVEELYFLRERDR---------------------------TAKSIVFSQFT  648 (791)
T ss_pred             --hhhhhhH-HHhhhcchhhhcchhHHHHHHHHHHHHHHccc---------------------------chhhhhHHHHH
Confidence              0000000 01123445678899999999999998887665                           56999999999


Q ss_pred             hhHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHhcCCCCcccC
Q 002565          863 RMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREVCSL  907 (907)
Q Consensus       863 ~~Ld~Le~~L~~~Gi~~~rLdGsms~~~R~~~I~~F~~dp~v~VL  907 (907)
                      +|||+|+..|.+.|+.++.|+|+|+.+.|++.|+.|.++++|+||
T Consensus       649 SmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vf  693 (791)
T KOG1002|consen  649 SMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVF  693 (791)
T ss_pred             HHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEE
Confidence            999999999999999999999999999999999999999999996

>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] Back     alignment and domain information
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] Back     alignment and domain information
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] Back     alignment and domain information
>COG3587 Restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>PHA02533 17 large terminase protein; Provisional Back     alignment and domain information
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>KOG1803 consensus DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] Back     alignment and domain information
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4 Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>KOG3039 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3039 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin Back     alignment and domain information
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B Back     alignment and domain information
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query907
1z6a_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN 2e-20
1z63_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM 5e-20
3mwy_W800 Crystal Structure Of The Chromodomain-atpase Portio 2e-07
1z3i_X644 Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA 8e-06
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 Back     alignment and structure 
Iteration: 1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/178 (36%), Positives = 97/178 (54%), Gaps = 7/178 (3%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
           L +V W  +V+DEAQ IKN +T++ +A   L++K R  L+GTPI+N +DDL+S   FL  
Sbjct: 145 LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNP 204
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
                Y  F S    PI +      ++L+A++   +LRRTK    D   I +LP K  + 
Sbjct: 205 GLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTK---YDKAIINDLPDKIETN 261
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK 684
              + + E+ A YK  E ++L  F    D+ T  +    IL  LL+L+Q  DHP L+K
Sbjct: 262 VYCNLTPEQAAMYKA-EVENL--FNNI-DSVTGIKRKGMILSTLLKLKQIVDHPALLK 315
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 Back     alignment and structure
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 Back     alignment and structure
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query907
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 4e-63
1z63_A 500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 1e-07
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 2e-19
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 2e-15
1z3i_X 644 Similar to RAD54-like; recombination ATPase helica 1e-09
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 1e-17
3mwy_W 800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 5e-08
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 9e-07
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 9e-05
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 1e-13
1z5z_A 271 Helicase of the SNF2/RAD54 family; hydrolase, reco 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 6e-10
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 5e-09
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 5e-09
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 1e-08
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 1e-08
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 2e-08
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 3e-08
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 3e-08
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 1e-07
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 3e-07
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 6e-07
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 8e-07
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 1e-05
4epo_C149 E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 5e-07
1wim_A94 KIAA0161 protein; ring finger domain, UBCM4-intera 6e-07
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 1e-06
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 1e-06
1z6u_A150 NP95-like ring finger protein isoform B; structura 2e-06
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 2e-06
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 2e-06
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 3e-06
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 4e-06
3vk6_A101 E3 ubiquitin-protein ligase hakai; HYB, phosphotyr 8e-06
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 1e-05
2cs3_A93 Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s 1e-05
2ysl_A73 Tripartite motif-containing protein 31; ring-type 1e-05
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 2e-05
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 2e-05
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 2e-05
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 2e-05
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 3e-05
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 3e-05
3hgt_A 328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 3e-05
2vje_A64 E3 ubiquitin-protein ligase MDM2; proto-oncogene, 4e-05
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 4e-05
2ysj_A63 Tripartite motif-containing protein 31; ring-type 5e-05
2ecj_A58 Tripartite motif-containing protein 39; TRIM39, ri 6e-05
2ecw_A85 Tripartite motif-containing protein 30; metal bind 7e-05
2vje_B63 MDM4 protein; proto-oncogene, phosphorylation, alt 2e-04
2egp_A79 Tripartite motif-containing protein 34; ZF-C3HC4 d 6e-04
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 6e-04
2yho_A79 E3 ubiquitin-protein ligase mylip; ligase, E2 liga 9e-04
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 Back     alignment and structure
 Score =  220 bits (564), Expect = 4e-63
 Identities = 108/460 (23%), Positives = 166/460 (36%), Gaps = 145/460 (31%)

Query: 254 LEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISI 313
              +     +   P  + +  L  +Q    +WM  +    L   G  LADD GLGKT+  
Sbjct: 18  GSHMASKSFQLLEPYNIKAN-LRPYQIKGFSWM--RFMNKLG-FGICLADDMGLGKTLQT 73

Query: 314 IALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVKETGESDDIKPVPEVST 373
           IA+                                        K+               
Sbjct: 74  IAV------------------------------------FSDAKKEN------------- 84

Query: 374 STRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKY 433
                    P   +LV+CP SVL+ W  EL    P    L   ++H         +L  Y
Sbjct: 85  ------ELTP---SLVICPLSVLKNWEEELSKFAPH---LRFAVFHEDRSKI---KLEDY 129

Query: 434 DVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKK 493
           D++LT                          TY +                         
Sbjct: 130 DIILT--------------------------TYAV------------------------- 138

Query: 494 GNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNS 553
             +          L +V W  +V+DEAQ IKN +T++ +A   L++K R  L+GTPI+N 
Sbjct: 139 --LLRDTR-----LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENK 191

Query: 554 IDDLYSYFRFLKYDP--YAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFI 611
           +DDL+S   FL  +P     Y  F S    PI +      ++L+A++   +LRRTK    
Sbjct: 192 VDDLWSIMTFL--NPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKY--- 246

Query: 612 DGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLL 671
           D   I +LP K  +    + + E+ A YK    +         D+ T  +    IL  LL
Sbjct: 247 DKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNI----DSVTGIKRKGMILSTLL 302

Query: 672 RLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLL 711
           +L+Q  DHP L+K     SV + SG+M         ++++
Sbjct: 303 KLKQIVDHPALLKG-GEQSVRR-SGKM------IRTMEII 334
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116 Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81 Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100 Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118 Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71 Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170 Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389 Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149 Back     alignment and structure
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94 Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64 Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115 Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150 Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71 Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99 Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112 Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124 Back     alignment and structure
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} Length = 101 Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133 Back     alignment and structure
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3 Length = 93 Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73 Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72 Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117 Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68 Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69 Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56 Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165 Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Length = 328 Back     alignment and structure
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64 Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74 Back     alignment and structure
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63 Back     alignment and structure
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58 Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85 Back     alignment and structure
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63 Back     alignment and structure
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108 Back     alignment and structure
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 907
d1z63a1230 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h 5e-20
d1z63a1230 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h 3e-09
d1z3ix2298 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis 6e-12
d1z3ix2298 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis 1e-08
d1fbva479 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta 3e-11
d1rmda286 g.44.1.1 (A:1-86) V(D)J recombination activating p 4e-11
d1jm7a_103 g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie 6e-10
d1z3ix1346 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi 1e-08
d1bora_56 g.44.1.1 (A:) Acute promyelocytic leukaemia proto- 5e-08
d1chca_68 g.44.1.1 (A:) Immediate early protein, IEEHV {Equi 3e-06
d1t1ha_78 g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre 4e-06
d1wima_94 g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016 3e-05
d2c2la280 g.44.1.2 (A:225-304) STIP1 homology and U box-cont 4e-05
d2baya156 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 { 1e-04
d1g25a_65 g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi 2e-04
d1ur6b_52 g.44.1.1 (B:) Not-4 N-terminal RING finger domain 2e-04
d1jm7b_97 g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie 8e-04
d2cs3a180 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Huma 0.001
d2fwra1200 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar 0.001
d1iyma_55 g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati 0.002
d1z5za1244 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 h 0.002
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Helicase of the SNF2/Rad54 hamily
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 87.8 bits (216), Expect = 5e-20
 Identities = 44/117 (37%), Positives = 65/117 (55%), Gaps = 3/117 (2%)

Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
              L +V W  +V+DEAQ IKN +T++ +A   L++K R  L+GTPI+N +DDL+S   F
Sbjct: 117 DTRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTF 176

Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLP 620
           L       Y  F S    PI +      ++L+A++   +LRRTK    D   I +LP
Sbjct: 177 LNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTK---YDKAIINDLP 230
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94 Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80 Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56 Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97 Back     information, alignment and structure
>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55 Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 244 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query907
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 100.0
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 100.0
d1z3ix1 346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 99.9
d1z5za1 244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 99.88
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.85
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 99.84
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.67
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.49
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.21
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 99.2
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 99.13
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 99.07
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 98.97
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 98.97
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 98.72
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 98.55
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 98.51
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 98.51
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 98.49
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 98.49
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 98.47
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 98.43
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 98.41
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 98.4
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 98.37
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 98.32
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 98.3
d2c2la280 STIP1 homology and U box-containing protein 1, STU 98.24
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 98.22
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 98.21
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 98.16
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 98.16
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 98.13
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 98.06
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 98.05
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 98.04
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 98.01
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 97.91
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 97.9
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 97.8
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 97.78
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 97.77
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 97.77
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 97.76
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 97.71
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 97.67
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 97.58
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 97.43
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 97.41
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 97.09
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 96.77
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 96.63
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 96.04
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 95.43
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 95.27
d1nkta3288 Translocation ATPase SecA, nucleotide-binding doma 94.38
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 93.7
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 92.64
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 89.81
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 87.59
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 82.09
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 82.01
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

Probab=100.00  E-value=0  Score=357.78  Aligned_cols=228  Identities=25%  Similarity=0.350  Sum_probs=184.7

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHC--CCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCC
Q ss_conf             7898754466726799999999982103--66666851231788845899999999731002331022203421112568
Q 002565          265 TLPDGLLSVNLLKHQKIALAWMLQKETR--SLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNL  342 (907)
Q Consensus       265 ~~P~~~l~~~L~~hQk~gl~wml~~e~~--~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~  342 (907)
                      .+++. +...|+|||++||.||+.+...  .....|||||||||||||+|+|+++........                 
T Consensus        47 ~~~p~-l~~~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~-----------------  108 (298)
T d1z3ix2          47 VVDPV-LSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSP-----------------  108 (298)
T ss_dssp             ECCHH-HHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCT-----------------
T ss_pred             EECHH-HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC-----------------
T ss_conf             57844-301020999999999999877354126874698747878899999999999998460-----------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
Q ss_conf             98888888675332236988899998776655333368899997399968245999999999769999980899996899
Q 002565          343 DDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS  422 (907)
Q Consensus       343 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sll~qW~~Ei~k~~~~~~~l~Vlvy~G~~  422 (907)
                                                          ......+++|||||++++.||.+||.+|++.  ...++.++|..
T Consensus       109 ------------------------------------~~~~~~~~~LIV~P~sl~~qW~~Ei~k~~~~--~~~~v~~~~~~  150 (298)
T d1z3ix2         109 ------------------------------------DCKPEIDKVIVVSPSSLVRNWYNEVGKWLGG--RVQPVAIDGGS  150 (298)
T ss_dssp             ------------------------------------TSSCSCSCEEEEECHHHHHHHHHHHHHHHGG--GCCEEEECSSC
T ss_pred             ------------------------------------CCCCCCCCEEEECCCHHHHHHHHHHHHHCCC--CEEEEEEECCH
T ss_conf             ------------------------------------1168877379980504557899988763577--52599996862


Q ss_pred             CCCC----------CCCCCCCCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             8889----------000179849991401020127999997456764211554577502334444210010001245788
Q 002565          423 RTKD----------PVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGK  492 (907)
Q Consensus       423 r~~~----------~~~l~~~dVVItTY~~l~~e~~~~~~~~~~~~~~~~~e~~~~~~~fs~~~~~k~~~~~~kk~~~~~  492 (907)
                      +.+.          ......++++|+||+.+..+..                                            
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~--------------------------------------------  186 (298)
T d1z3ix2         151 KDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--------------------------------------------  186 (298)
T ss_dssp             HHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--------------------------------------------
T ss_pred             HHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHH--------------------------------------------
T ss_conf             777888998765303766661399986123222200--------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCH
Q ss_conf             88878876668888632340399983576569931089999994002814897266754641356656775336788756
Q 002565          493 KGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVY  572 (907)
Q Consensus       493 k~~~~~~~~~~~~~L~~i~w~rVILDEAH~IKN~~s~~skA~~~L~a~~Rw~LTGTPiqN~l~DL~sll~FL~~~~~~~~  572 (907)
                                   .+..+.|++||+||||.+||..++.+++++.|++++||+|||||++|++.|||++++||.|++|+++
T Consensus       187 -------------~l~~~~~~~vI~DEaH~ikn~~s~~~~a~~~l~~~~rllLTGTPi~N~~~dl~~ll~fl~p~~~~~~  253 (298)
T d1z3ix2         187 -------------VLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTA  253 (298)
T ss_dssp             -------------TTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCH
T ss_pred             -------------CCCCCCEEEEECCCCCCCCCCCCHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf             -------------0334211454114232201322034564421341125652260776666889999987487757999


Q ss_pred             HHHHHHHCCCCCCCC------------HHHHHHHHHHHHHHHHHH
Q ss_conf             889967145554585------------566799999999987561
Q 002565          573 KSFYSTIKIPISRNS------------LHGYKKLQAVLRAIMLRR  605 (907)
Q Consensus       573 ~~F~~~~~~pi~~~~------------~~~~~~Lq~lL~~~mLRR  605 (907)
                      ..|.+.|..|+..+.            ...+.+|+.++++|||||
T Consensus       254 ~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~lRR  298 (298)
T d1z3ix2         254 QEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRR  298 (298)
T ss_dssp             HHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECC
T ss_pred             HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECC
T ss_conf             999999966987376668767889989999999999722231679
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure