Citrus Sinensis ID: 002574

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900------
Protein Sequence
MAACTGFSSDHFKSICTFLILFSLSSYLGSTIKHCLADANVEVLCLDAEREGLLAFKESLTDPSGRLSSWVGQDCCKWNGVYCNNQSGHVTQLNLRNPYQLINGGVGDSTAYKGSCLGGKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSLPNFNDPSIYEGNPLLCGAPLPTKCPGKHSPLH
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccccccccccccccccEEEccccccEEEEEccccccccccccccccccccccccEEccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccHHHHccccHHHcccccccEEEccccccccccccHHHHHcccccccEEEccccccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHccccccccEEEccccccccccccccccccccccEEEcccccccccccHHHHHcccccccccEEEcccccccccccccccccccccEEEccccEEEEEccccccccccccEEEcccccccccccccccccccccEEEccccccEEEEcHHHHcccccccEEEccccccccEEEEccccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHHHcccccEEEccccccccccccccccccccEEEccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccEEEcccccccccccccHHccccccEEEccccccEEEccccccccccccEEEccccEEEEcccHHHHccccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccEEEcccccccccccHHHHHcccccccccccEEEEEEEEEEEEcccccccccccccEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEEccccccEEccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccccccccccEEEEEEcccccEEEEEEccccccccccccccEEEcccccccccccHHHHccccccEEEccccccccccccHHHcccccccEEEcccccccccccccHccccccEEEEcccccccccccHHHcccccHHHHccccccHHEEccccccccccccccHHHccccccEEEEcccccccccccccccccccccEEEEcccccccccccHHHHccccccEEEcccccccEEccccccccccccEEEccccccccccccccccccccccEEEcccccccccccHHHHHHccccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHHHccccEEEEccccccccEcccccccccccccEEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHHHcccccEEEcccccccccccccccccccEEEEEccccccccccccccccEEEEcccccccccccHHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHHccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHcHHHHHHHHHcccEEEcccccccccccHHHHHHHHHcEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEcccccccccccHHHHccccccccccccccccccccccc
Coil and Loop (DISEMBL)
maactgfssdhfKSICTFLILFSLSSYLGSTIKHCLADANVEVLCLDAEREGLLAFKesltdpsgrlsswvgqdcckwngvycnnqsghvtqlnlrnpyqlinggvgdstaykgsclggkinpsllhlkyldtldlslndfegaeipeYFGQLKNLRYLnlsfssfsgeippqlgslsslqyLDLYAdsfssnsgslalHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCqlqgiplslpfinftsisvldlsensfnsaippwlfSLTSLTKLYLRwnfftghipnefANLKLLEVLdlsnnldlggqlpKLFGILRRLKSldlsannlngevheffdgfsgrpnnleyldlssnslegelpkslgnlknlqylrlsgnsfwgsipssignlsslrkldlsyngmngtipesfGKLSELVDANLLQNSWEGILQESQFMNLKRLesfrltteptkkFVFNvsynwvppfrlksiqiencqvgpsfpVWLQVQTELTSVILRNvgisdtipgdwfskLSSEITYLILSnnqikgklprqmnspnlrsidlssnhfegtlplwstnadelflqdnrfsgplpenigslmpRLQRLYLSWNqlsgripssvcnledlqILSIRsnklsgefpncwyhsqmfwgidisnnsltgsipssfgsLRSLSVLLLSnnnlsggipcslqnctgltsidlggnqlsgslplwisENLSSFFMLRLRSnllsgdipqrlcnlqnlhiidlshnnfsgaipRCIGNLSALVYGNNSEVFQQLIWRVVkgrnpeysniIADVNSidlswnnltgqipdeigNLSALHILNLShnqlsgaipqSLSSLASLSKLNLSFNnlagkipslpnfndpsiyegnpllcgaplptkcpgkhsplh
Flexible Loop (DISEMBL)
maactgfssdhFKSICTFLILFSLSSYLGSTIKHCLADANVEVLCLDAEREGLLAFKesltdpsgrlsSWVGQDCCKWNGVYCNNQSGHVTQLNLRNPYQLINGGVGDSTAYKGSCLGGKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSLPNFNDPSIYEGNPLLCGAPlptkcpgkhsplh
Low Complexity Region (SEG)
MAACTGFSSDHFKSICTFLILFSLSSYLGSTIKHCLADANVEVLCLDAEREGLLAFKESLTDPSGRLSSWVGQDCCKWNGVYCNNQSGHVTQLNLRNPYQLINGGVGDSTAYKGSCLGGKINPsllhlkyldtldlslNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQnlnwlsglsslkllnlGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPssfgslrslsvlllsnnnlsggIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQslsslaslsklnlsfnnlAGKIPSLPNFNDPSIYEGNPLLCGAPLPTKCPGKHSPLH
Disordered region (IsUnstruct)
*****GFSSDHFKSICTFLILFSLSSYLGSTIKHCLADANVEVLCLDAEREGLLAFKESLTDPSGRLSSWVGQDCCKWNGVYCNNQSGHVTQLNLRNPYQLINGGVGDSTAYKGSCLGGKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDL************LGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQI********************NHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIP*****LASLSKLNLSFNNLAGKIPSLPNFNDPSIYEGNPLLCGA**************
Disordered Region (DISOPRED)
************KSICTFLILFSLSSYLGSTIKHCLAD*N****CLDAEREGLLAFKESLTDPSGRLSSWVGQDCCKWNGVYCNNQSGHVTQLNLRNPYQLINGGVGDSTAYKGSCLGGKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSLPNFNDPSIYEGNPLLCGA**************
Disordered Region (DISEMBL)
********SDHFKSICTFLILFSLSSYLGSTIKHCLADANVEVLCLDAEREGLLAFKESLTDPSGRLSSWVGQDCCKWNGVYCNNQSGHVTQLNLRNPYQLINGGVGDSTAYKGSCLGGKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSLPNFNDPSIYEGNPLLCGAPLPTKC********
Disordered Region (DISPRO)
******FSSDHFKSICTFLILFSLSSYLGSTIKHCLADANVEVLCLDAEREGLLAFKESLTDPSGRLSSWVGQDCCKWNGVYCNNQSGHVTQLNLRNPYQLINGGVGDSTAYKGSCLGGKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSLPNFNDPSIYEGNPLLCGAPLP***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAACTGFSSDHFKSICTFLILFSLSSYLGSTIKHCLADANVEVLCLDAEREGLLAFKESLTDPSGRLSSWVGQDCCKWNGVYCNNQSGHVTQLNLRNPYQLINGGVGDSTAYKGSCLGGKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSLPNFNDPSIYEGNPLLCGAPLPTKCPGKHSPLH
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	906	2.2.26 [Sep-21-2011]
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.876	0.635	0.332	5e-79
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.839	0.607	0.325	2e-76
Q9FL28	1173	LRR receptor-like serine/	no	no	0.706	0.545	0.322	2e-73
Q9LP24	1120	Probable leucine-rich rep	no	no	0.791	0.640	0.317	5e-73
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.624	0.474	0.365	7e-71
O49318	1124	Probable leucine-rich rep	no	no	0.685	0.552	0.320	1e-67
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.682	0.544	0.319	8e-66
Q9C9H7	847	Receptor-like protein 12	no	no	0.656	0.702	0.329	1e-62
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.643	0.535	0.325	1e-60
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.683	0.562	0.305	8e-60

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  296 bits (758), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 294/885 (33%), Positives = 420/885 (47%), Gaps = 91/885 (10%)

Query: 51  EGLLAFKESL-TDPSGR--LSSWVGQDC--CKWNGVYCNNQS-GHVTQLNLRNPYQLING 104
           + LL  K+SL T+P     L  W   +   C W GV C+N     V  LNL         
Sbjct: 28  QTLLEVKKSLVTNPQEDDPLRQWNSDNINYCSWTGVTCDNTGLFRVIALNLT-------- 79

Query: 105 GVGDSTAYKGSCLGGKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFS 164
           G+G         L G I+P       L  LDLS N+  G  IP     L +L  L L  +
Sbjct: 80  GLG---------LTGSISPWFGRFDNLIHLDLSSNNLVGP-IPTALSNLTSLESLFLFSN 129

Query: 165 SFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLD 224
             +GEIP QLGSL +++ L +         G   L       L  L +L++L L   +L 
Sbjct: 130 QLTGEIPSQLGSLVNIRSLRI---------GDNELVGDIPETLGNLVNLQMLALASCRLT 180

Query: 225 HVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLF 284
                 L  +  + SL+ L+ +Y  L+G P+     N + ++V   +EN  N  IP  L 
Sbjct: 181 GPIPSQLGRLVRVQSLI-LQDNY--LEG-PIPAELGNCSDLTVFTAAENMLNGTIPAELG 236

Query: 285 SLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLS 344
            L +L  L L  N  TG IP++   +  L+ L L  N  L G +PK    L  L++LDLS
Sbjct: 237 RLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMAN-QLQGLIPKSLADLGNLQTLDLS 295

Query: 345 ANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSL-GNLKNLQYLRLSGNSFWGS 403
           ANNL GE+ E F   S     L  L L++N L G LPKS+  N  NL+ L LSG    G 
Sbjct: 296 ANNLTGEIPEEFWNMS----QLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGE 351

Query: 404 IPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQE--SQFMNLK 461
           IP  +    SL++LDLS N + G+IPE+  +L EL D  L  N+ EG L    S   NL+
Sbjct: 352 IPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQ 411

Query: 462 RLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRN 521
            L  +    E   K    +S       +L+ + +   +     P  +   T L  + +  
Sbjct: 412 WLVLYHNNLE--GKLPKEIS----ALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFG 465

Query: 522 VGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQM-NSPNLRSIDLSSNHFEGTLPL- 579
                 IP     +L  E+  L L  N++ G LP  + N   L  +DL+ N   G++P  
Sbjct: 466 NHFEGEIPPS-IGRL-KELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSS 523

Query: 580 --WSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILS 637
             +    ++L L +N   G LP+++ SL   L R+ LS N+L+G I   +C         
Sbjct: 524 FGFLKGLEQLMLYNNSLQGNLPDSLISLR-NLTRINLSHNRLNGTI-HPLCGSSSYLSFD 581

Query: 638 IRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPC 697
           + +N    E P    +SQ    + +  N LTG IP + G +R LS+L +S+N L+G IP 
Sbjct: 582 VTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPL 641

Query: 698 SLQNCTGLTSIDLGGNQLSGSLPLWISE-----------------------NLSSFFMLR 734
            L  C  LT IDL  N LSG +P W+ +                       N +   +L 
Sbjct: 642 QLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLS 701

Query: 735 LRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRV 794
           L  N L+G IPQ + NL  L++++L  N FSG++P+ +G LS L          +L    
Sbjct: 702 LDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYE-------LRLSRNS 754

Query: 795 VKGRNPEYSNIIADVNS-IDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSS 853
           + G  P     + D+ S +DLS+NN TG IP  IG LS L  L+LSHNQL+G +P S+  
Sbjct: 755 LTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGD 814

Query: 854 LASLSKLNLSFNNLAGKIPSLPNFNDPSIYEGNPLLCGAPLPTKC 898
           + SL  LN+SFNNL GK+    +      + GN  LCG+PL ++C
Sbjct: 815 MKSLGYLNVSFNNLGGKLKKQFSRWPADSFLGNTGLCGSPL-SRC 858

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  288 bits (736), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 278/854 (32%), Positives = 401/854 (46%), Gaps = 93/854 (10%)

Query: 76  CKWNGVYCNNQSGHVTQLNLRNPYQLINGGVGDSTAYKGSCLGGKINPSLLHLKYLDTLD 135
           C W GV C  +   +  LNL         G+G         L G I+PS+     L  +D
Sbjct: 61  CNWTGVTCGGR--EIIGLNL--------SGLG---------LTGSISPSIGRFNNLIHID 101

Query: 136 LSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSG 195
           LS N   G           +L  L+L  +  SG+IP QLGSL +L+ L L         G
Sbjct: 102 LSSNRLVGPIPTTLSNLSSSLESLHLFSNLLSGDIPSQLGSLVNLKSLKL---------G 152

Query: 196 SLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPL 255
              L+         L +L++L L   +L  +       +  L +L+   L   +L+G P+
Sbjct: 153 DNELNGTIPETFGNLVNLQMLALASCRLTGLIPSRFGRLVQLQTLI---LQDNELEG-PI 208

Query: 256 SLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEV 315
                N TS+++   + N  N ++P  L  L +L  L L  N F+G IP++  +L  ++ 
Sbjct: 209 PAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQY 268

Query: 316 LDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNS 375
           L+L  N  L G +PK    L  L++LDLS+NNL G +HE F     R N LE+L L+ N 
Sbjct: 269 LNLIGN-QLQGLIPKRLTELANLQTLDLSSNNLTGVIHEEF----WRMNQLEFLVLAKNR 323

Query: 376 LEGELPKSL-GNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGK 434
           L G LPK++  N  +L+ L LS     G IP+ I N  SL+ LDLS N + G IP+S  +
Sbjct: 324 LSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQ 383

Query: 435 LSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPF-----R 489
           L EL +  L  NS EG L  S   NL  L+ F L          N     VP       +
Sbjct: 384 LVELTNLYLNNNSLEGTLS-SSISNLTNLQEFTL--------YHNNLEGKVPKEIGFLGK 434

Query: 490 LKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQ 549
           L+ + +   +     PV +   T L  +      +S  IP     +L  ++T L L  N+
Sbjct: 435 LEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSS-IGRLK-DLTRLHLRENE 492

Query: 550 IKGKLPRQM-NSPNLRSIDLSSNHFEGTLP--LWSTNADELFL-QDNRFSGPLPENIGSL 605
           + G +P  + N   +  IDL+ N   G++P       A ELF+  +N   G LP+++ +L
Sbjct: 493 LVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINL 552

Query: 606 MPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNN 665
              L R+  S N+ +G I S +C         +  N   G+ P     S     + +  N
Sbjct: 553 -KNLTRINFSSNKFNGSI-SPLCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGKN 610

Query: 666 SLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISE 725
             TG IP +FG +  LS+L +S N+LSG IP  L  C  LT IDL  N LSG +P W+ +
Sbjct: 611 QFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGK 670

Query: 726 -----------------------NLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHN 762
                                  +L++   L L  N L+G IPQ + NLQ L+ ++L  N
Sbjct: 671 LPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEEN 730

Query: 763 NFSGAIPRCIGNLSALVYGNNSEVFQQLIWR-VVKGRNPEYSNIIADVNS-IDLSWNNLT 820
             SG +P  IG LS L        F+  + R  + G  P     + D+ S +DLS+NN T
Sbjct: 731 QLSGPLPSTIGKLSKL--------FELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFT 782

Query: 821 GQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSLPNFNDP 880
           G+IP  I  L  L  L+LSHNQL G +P  +  + SL  LNLS+NNL GK+    +    
Sbjct: 783 GRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKKQFSRWQA 842

Query: 881 SIYEGNPLLCGAPL 894
             + GN  LCG+PL
Sbjct: 843 DAFVGNAGLCGSPL 856

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  278 bits (710), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 243/754 (32%), Positives = 351/754 (46%), Gaps = 114/754 (15%)

Query: 240 LVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFF 299
           +V + L   QL+G+ LS    N T + VLDL+ NSF   IP  +  LT L +L L  N+F
Sbjct: 74  VVSVSLLEKQLEGV-LSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYF 132

Query: 300 TGHIPNEFANLKLLEVLDLSNNL-----------------------DLGGQLPKLFGILR 336
           +G IP+    LK +  LDL NNL                       +L G++P+  G L 
Sbjct: 133 SGSIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLV 192

Query: 337 RLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLS 396
            L+    + N+L G +        G   NL  LDLS N L G++P+  GNL NLQ L L+
Sbjct: 193 HLQMFVAAGNHLTGSIPVSI----GTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLT 248

Query: 397 GNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQ 456
            N   G IP+ IGN SSL +L+L  N + G IP   G L +L    + +N     +  S 
Sbjct: 249 ENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSL 308

Query: 457 FM--------------------NLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIE 496
           F                      +  LES  + T  +  F      +      L  + + 
Sbjct: 309 FRLTQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVG 368

Query: 497 NCQVGPSFPVWLQVQTELTSVILRNVGISDTI-PGDWFSKLS--SEITYLILSNNQIKGK 553
              +    P  L + T L     RN+   D +  G   S +S  + +  L LS+NQ+ G+
Sbjct: 369 FNNISGELPADLGLLTNL-----RNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGE 423

Query: 554 LPRQMNSPNLRSIDLSSNHFEGTLP---LWSTNADELFLQDNRFSGPLPENIGSLMPRLQ 610
           +PR     NL  I +  NHF G +P      +N + L + DN  +G L   IG L  +L+
Sbjct: 424 IPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQ-KLR 482

Query: 611 RLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGS 670
            L +S+N L+G IP  + NL+DL IL + SN  +G  P    +  +  G+ + +N L G 
Sbjct: 483 ILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGP 542

Query: 671 IPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLP---------- 720
           IP     ++ LSVL LSNN  SG IP        LT + L GN+ +GS+P          
Sbjct: 543 IPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLN 602

Query: 721 -LWISENLSSFFM--------------LRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFS 765
              IS+NL +  +              L   +NLL+G IP+ L  L+ +  IDLS+N FS
Sbjct: 603 TFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFS 662

Query: 766 GAIPRCI---GNLSALVYGNN-------SEVFQQLIWRVVKGRNPEYSNIIADVNSIDLS 815
           G+IPR +    N+  L +  N        EVFQ +   +                S++LS
Sbjct: 663 GSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMII----------------SLNLS 706

Query: 816 WNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSLP 875
            N+ +G+IP   GN++ L  L+LS N L+G IP+SL++L++L  L L+ NNL G +P   
Sbjct: 707 RNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESG 766

Query: 876 NFN--DPSIYEGNPLLCGAPLPTK-CPGKHSPLH 906
            F   + S   GN  LCG+  P K C  K    H
Sbjct: 767 VFKNINASDLMGNTDLCGSKKPLKPCTIKQKSSH 800

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  276 bits (706), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 272/857 (31%), Positives = 381/857 (44%), Gaps = 140/857 (16%)

Query: 48  AEREGLLAFKESLTDPSGRLSSWVGQ-------DCCKWNGVYCNNQSGHVTQLNLRNPYQ 100
           AE   LL +K + T+ S +LSSWV          C  W GV CN++ G + +LNL N   
Sbjct: 32  AEANALLKWKSTFTN-SSKLSSWVHDANTNTSFSCTSWYGVSCNSR-GSIEELNLTN--- 86

Query: 101 LINGGVGDSTAYKGSCLGGKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLN 160
                    T  +G+                        DF        F  L NL Y++
Sbjct: 87  ---------TGIEGT----------------------FQDFP-------FISLSNLAYVD 108

Query: 161 LSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGF 220
           LS +  SG IPPQ G+LS L Y DL                   N L+G  S  L NL  
Sbjct: 109 LSMNLLSGTIPPQFGNLSKLIYFDLST-----------------NHLTGEISPSLGNLKN 151

Query: 221 VKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIP 280
           + + ++  ++L +V                  IP  L   N  S++ L LS+N    +IP
Sbjct: 152 LTVLYLHQNYLTSV------------------IPSELG--NMESMTDLALSQNKLTGSIP 191

Query: 281 PWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKS 340
             L +L +L  LYL  N+ TG IP E  N++ +  L LS N  L G +P   G L+ L  
Sbjct: 192 SSLGNLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQN-KLTGSIPSTLGNLKNLMV 250

Query: 341 LDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSF 400
           L L  N L G +        G   ++  L LS N L G +P SLGNLKNL  L L  N  
Sbjct: 251 LYLYENYLTGVIPPEI----GNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYL 306

Query: 401 WGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNL 460
            G IP  +GN+ S+  L+LS N + G+IP S G L  L    L +N   G++       L
Sbjct: 307 TGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPE----L 362

Query: 461 KRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILR 520
             +ES                        +  +Q+ N ++  S P        LT + L 
Sbjct: 363 GNMES------------------------MIDLQLNNNKLTGSIPSSFGNLKNLTYLYLY 398

Query: 521 NVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQM-NSPNLRSIDLSSNHFEGTLPL 579
              ++  IP +    + S I  L LS N++ G +P    N   L S+ L  NH  G +P 
Sbjct: 399 LNYLTGVIPQE-LGNMESMIN-LDLSQNKLTGSVPDSFGNFTKLESLYLRVNHLSGAIPP 456

Query: 580 WSTNADEL---FLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQIL 636
              N+  L    L  N F+G  PE +     +LQ + L +N L G IP S+ + + L   
Sbjct: 457 GVANSSHLTTLILDTNNFTGFFPETVCK-GRKLQNISLDYNHLEGPIPKSLRDCKSLIRA 515

Query: 637 SIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIP 696
               NK +G+    +        ID S+N   G I S++     L  L++SNNN++G IP
Sbjct: 516 RFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPKLGALIMSNNNITGAIP 575

Query: 697 CSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHI 756
             + N T L  +DL  N L G LP  I  NL++   LRL  N LSG +P  L  L NL  
Sbjct: 576 TEIWNMTQLVELDLSTNNLFGELPEAIG-NLTNLSRLRLNGNQLSGRVPAGLSFLTNLES 634

Query: 757 IDLSHNNFSGAIPRCIGNLSALVYGNNSE-VFQQLIWRVVKGRNPEYSNIIADVNSIDLS 815
           +DLS NNFS  IP+   +   L   N S   F   I R+ K         +  +  +DLS
Sbjct: 635 LDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIPRLSK---------LTQLTQLDLS 685

Query: 816 WNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSLP 875
            N L G+IP ++ +L +L  L+LSHN LSG IP +   + +L+ +++S N L G +P  P
Sbjct: 686 HNQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGPLPDTP 745

Query: 876 NFNDPS--IYEGNPLLC 890
            F   +    E N  LC
Sbjct: 746 TFRKATADALEENIGLC 762

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  269 bits (688), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 235/643 (36%), Positives = 324/643 (50%), Gaps = 77/643 (11%)

Query: 279 IPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRL 338
           IP  + SL +L +L L  N F+G IP E  NLK L+ LDLS N  L G LP+L   L +L
Sbjct: 81  IPKEISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSGN-SLTGLLPRLLSELPQL 139

Query: 339 KSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGN 398
             LDLS N+ +G +   F  F   P  L  LD+S+NSL GE+P  +G L NL  L +  N
Sbjct: 140 LYLDLSDNHFSGSLPPSF--FISLPA-LSSLDVSNNSLSGEIPPEIGKLSNLSNLYMGLN 196

Query: 399 SFWGSIPSSIGNLSSLR------------------------KLDLSYNGMNGTIPESFGK 434
           SF G IPS IGN+S L+                        KLDLSYN +  +IP+SFG+
Sbjct: 197 SFSGQIPSEIGNISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNPLKCSIPKSFGE 256

Query: 435 LSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQ 494
           L  L   NL+     G++   +  N K L+S  L+        FN S +   P  L  I 
Sbjct: 257 LHNLSILNLVSAELIGLIP-PELGNCKSLKSLMLS--------FN-SLSGPLPLELSEIP 306

Query: 495 I-----ENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQ 549
           +     E  Q+  S P W+     L S++L N   S  IP +   +    + +L L++N 
Sbjct: 307 LLTFSAERNQLSGSLPSWMGKWKVLDSLLLANNRFSGEIPHEI--EDCPMLKHLSLASNL 364

Query: 550 IKGKLPRQM-NSPNLRSIDLSSNHFEGTLPLW---STNADELFLQDNRFSGPLPENIGSL 605
           + G +PR++  S +L +IDLS N   GT+       ++  EL L +N+ +G +PE++  L
Sbjct: 365 LSGSIPRELCGSGSLEAIDLSGNLLSGTIEEVFDGCSSLGELLLTNNQINGSIPEDLWKL 424

Query: 606 MPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNN 665
              L  L L  N  +G IP S+    +L   +   N+L G  P    ++     + +S+N
Sbjct: 425 --PLMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGYLPAEIGNAASLKRLVLSDN 482

Query: 666 SLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISE 725
            LTG IP   G L SLSVL L+ N   G IP  L +CT LT++DLG N L G +P  I+ 
Sbjct: 483 QLTGEIPREIGKLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITA 542

Query: 726 NLSSFFMLRLRSNLLSGDIPQR------------LCNLQNLHIIDLSHNNFSGAIPRCIG 773
            L+    L L  N LSG IP +            L  LQ+  I DLS+N  SG IP  +G
Sbjct: 543 -LAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELG 601

Query: 774 NLSALV---YGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNL 830
               LV     NN           + G  P   + + ++  +DLS N LTG IP E+GN 
Sbjct: 602 ECLVLVEISLSNNH----------LSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNS 651

Query: 831 SALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPS 873
             L  LNL++NQL+G IP+S   L SL KLNL+ N L G +P+
Sbjct: 652 LKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPA 694

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  259 bits (661), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 214/667 (32%), Positives = 337/667 (50%), Gaps = 46/667 (6%)

Query: 265 ISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDL 324
           ++ LDLS  + +  + P +  L +L  L L +N  TG IP E  N   LEV+ L+NN   
Sbjct: 87  VTSLDLSSMNLSGIVSPSIGGLVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNN-QF 145

Query: 325 GGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSL 384
           GG +P     L +L+S ++  N L+G + E      G   NLE L   +N+L G LP+SL
Sbjct: 146 GGSIPVEINKLSQLRSFNICNNKLSGPLPEEI----GDLYNLEELVAYTNNLTGPLPRSL 201

Query: 385 GNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLL 444
           GNL  L   R   N F G+IP+ IG   +L+ L L+ N ++G +P+  G L +L +  L 
Sbjct: 202 GNLNKLTTFRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILW 261

Query: 445 QNSWEGILQESQFMNLKRLESFRLT----TEPTKKFVFNVSYNWVPPFRLKSIQIENCQV 500
           QN + G + +    NL  LE+  L       P    + N+         LK + +   Q+
Sbjct: 262 QNKFSGFIPK-DIGNLTSLETLALYGNSLVGPIPSEIGNMK-------SLKKLYLYQNQL 313

Query: 501 GPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNS 560
             + P  L   +++  +      +S  IP +  SK+S E+  L L  N++ G +P +++ 
Sbjct: 314 NGTIPKELGKLSKVMEIDFSENLLSGEIPVE-LSKIS-ELRLLYLFQNKLTGIIPNELSK 371

Query: 561 -PNLRSIDLSSNHFEGTLPLWS---TNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSW 616
             NL  +DLS N   G +P      T+  +L L  N  SG +P+ +G   P L  +  S 
Sbjct: 372 LRNLAKLDLSINSLTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYSP-LWVVDFSE 430

Query: 617 NQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFG 676
           NQLSG+IP  +C   +L +L++ SN++ G  P      +    + +  N LTG  P+   
Sbjct: 431 NQLSGKIPPFICQQSNLILLNLGSNRIFGNIPPGVLRCKSLLQLRVVGNRLTGQFPTELC 490

Query: 677 SLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLR 736
            L +LS + L  N  SG +P  +  C  L  + L  NQ S +LP  IS+ LS+     + 
Sbjct: 491 KLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISK-LSNLVTFNVS 549

Query: 737 SNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSAL----------------VY 780
           SN L+G IP  + N + L  +DLS N+F G++P  +G+L  L                  
Sbjct: 550 SNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEILRLSENRFSGNIPFTI 609

Query: 781 GNNSEVFQ-QLIWRVVKGRNPEYSNIIADVN-SIDLSWNNLTGQIPDEIGNLSALHILNL 838
           GN + + + Q+   +  G  P    +++ +  +++LS+N+ +G+IP EIGNL  L  L+L
Sbjct: 610 GNLTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSL 669

Query: 839 SHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSLPNFNDPSI--YEGNPLLCGAPLPT 896
           ++N LSG IP +  +L+SL   N S+NNL G++P    F + ++  + GN  LCG  L +
Sbjct: 670 NNNHLSGEIPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCGGHLRS 729

Query: 897 KCPGKHS 903
            C   HS
Sbjct: 730 -CDPSHS 735

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  252 bits (644), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 234/732 (31%), Positives = 355/732 (48%), Gaps = 114/732 (15%)

Query: 229 DWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTS 288
           DW         + E+RL   QL G  +S        +  L L  NSFN  IP  L   T 
Sbjct: 59  DWRGVGCTNHRVTEIRLPRLQLSG-RISDRISGLRMLRKLSLRSNSFNGTIPTSLAYCTR 117

Query: 289 LTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNL 348
           L  ++L++N  +G +P    NL  LEV +++ N  L G++P   G+   L+ LD+S+N  
Sbjct: 118 LLSVFLQYNSLSGKLPPAMRNLTSLEVFNVAGN-RLSGEIP--VGLPSSLQFLDISSNTF 174

Query: 349 NGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSI 408
           +G++             L+ L+LS N L GE+P SLGNL++LQYL L  N   G++PS+I
Sbjct: 175 SGQIPSGL----ANLTQLQLLNLSYNQLTGEIPASLGNLQSLQYLWLDFNLLQGTLPSAI 230

Query: 409 GNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRL 468
            N SSL  L  S N + G IP ++G L +L   +L  N++ G +  S F N         
Sbjct: 231 SNCSSLVHLSASENEIGGVIPAAYGALPKLEVLSLSNNNFSGTVPFSLFCN--------- 281

Query: 469 TTEPTKKFVFNVSYNWVPPFR-------LKSIQIENCQVGPSFPVWLQVQTELTSVILRN 521
           T+    +  FN   + V P         L+ + ++  ++   FP+WL   T + S  L+N
Sbjct: 282 TSLTIVQLGFNAFSDIVRPETTANCRTGLQVLDLQENRISGRFPLWL---TNILS--LKN 336

Query: 522 VGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQM-NSPNLRSIDLSSNHFEGTLPLW 580
           + +S    G+ FS                 G++P  + N   L  + L++N   G +P+ 
Sbjct: 337 LDVS----GNLFS-----------------GEIPPDIGNLKRLEELKLANNSLTGEIPVE 375

Query: 581 STNA---DELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILS 637
                  D L  + N   G +PE +G  M  L+ L L  N  SG +PSS+ NL+ L+ L+
Sbjct: 376 IKQCGSLDVLDFEGNSLKGQIPEFLG-YMKALKVLSLGRNSFSGYVPSSMVNLQQLERLN 434

Query: 638 IRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPC 697
           +  N L+G FP           +D+S N  +G++P S  +L +LS L LS N  SG IP 
Sbjct: 435 LGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPA 494

Query: 698 SLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHII 757
           S+ N   LT++DL    +SG +P+ +S  L +  ++ L+ N  SG +P+   +L +L  +
Sbjct: 495 SVGNLFKLTALDLSKQNMSGEVPVELS-GLPNVQVIALQGNNFSGVVPEGFSSLVSLRYV 553

Query: 758 DLSHNNFSGAIPRC------------------------IGNLSALVYGNNSEVFQQLIWR 793
           +LS N+FSG IP+                         IGN SAL      EV +    R
Sbjct: 554 NLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSAL------EVLELRSNR 607

Query: 794 VVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSS 853
           ++ G  P   + +  +  +DL  NNL+G+IP EI   S+L+ L+L HN LSG IP S S 
Sbjct: 608 LM-GHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSG 666

Query: 854 LASLSKLNLSFNNLAGKIPS----------------------LP-----NFNDPSIYEGN 886
           L++L+K++LS NNL G+IP+                      +P       N+ S + GN
Sbjct: 667 LSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASLGSRINNTSEFSGN 726

Query: 887 PLLCGAPLPTKC 898
             LCG PL  +C
Sbjct: 727 TELCGKPLNRRC 738

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  241 bits (616), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 225/683 (32%), Positives = 324/683 (47%), Gaps = 88/683 (12%)

Query: 268 LDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQ 327
           LDL+  +    IP  L +L+ LT + L +N F G IP    NL  L  L L+NN+ L G+
Sbjct: 115 LDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNV-LTGE 173

Query: 328 LPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNL 387
           +P   G L RL +L+L +N L G++ +      G    L  L L+SN+L GE+P SLGNL
Sbjct: 174 IPSSLGNLSRLVNLELFSNRLVGKIPDSI----GDLKQLRNLSLASNNLIGEIPSSLGNL 229

Query: 388 KNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNS 447
            NL +L L+ N   G +P+SIGNL  LR +    N ++G IP SF  L++L    L  N+
Sbjct: 230 SNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPISFANLTKLSIFVLSSNN 289

Query: 448 WEGIL--QESQFMNLKRLESFRLTTEPTKKFVFNVSYN-WVPPF--------RLKSIQI- 495
           +        S F NL+                F+VSYN +  PF         L+SI + 
Sbjct: 290 FTSTFPFDMSIFHNLE---------------YFDVSYNSFSGPFPKSLLLIPSLESIYLQ 334

Query: 496 ENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLP 555
           EN   GP         T+L  +IL    +   IP      L+ E   L +S+N   G +P
Sbjct: 335 ENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESISRLLNLE--ELDISHNNFTGAIP 392

Query: 556 RQMNS-PNLRSIDLSSNHFEGTLP--LWSTNADELFLQDNRFSGPLPENIGSLMPRLQRL 612
             ++   NL  +DLS N+ EG +P  LW  N   + L  N FS    EN       ++ L
Sbjct: 393 PTISKLVNLLHLDLSKNNLEGEVPACLWRLNT--MVLSHNSFSSF--ENTSQEEALIEEL 448

Query: 613 YLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYH-SQMFWGIDISNNSLTGSI 671
            L+ N   G IP  +C L  L  L + +N  SG  P+C  + S     +++ +N+ +G++
Sbjct: 449 DLNSNSFQGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTL 508

Query: 672 PSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFF 731
           P  F     L  L +S+N L G  P SL NC  L  +++  N++    P W+ E+L S  
Sbjct: 509 PDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWL-ESLPSLH 567

Query: 732 MLRLRSNLLSGDIPQRLCNL--QNLHIIDLSHNNFSGAIPRCI----GNLSALVYGNNSE 785
           +L LRSN   G +  R  ++  Q+L IID+SHNNFSG +P        +++ L      +
Sbjct: 568 VLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLT--EEMD 625

Query: 786 VFQQLIWR-----------VVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALH 834
            +    WR           V KG +  +  I  D  +ID S N + G IP+ +G L  L 
Sbjct: 626 QYMTEFWRYADSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELR 685

Query: 835 ILNLS------------------------HNQLSGAIPQSLSSLASLSKLNLSFNNLAGK 870
           +LNLS                         N+LSG IPQ L++L+ LS +N S N L G 
Sbjct: 686 VLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGP 745

Query: 871 IPSLPNFNDP--SIYEGNPLLCG 891
           +P    F     S +  NP L G
Sbjct: 746 VPRGTQFQRQKCSSFLDNPGLYG 768

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  235 bits (599), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 214/657 (32%), Positives = 323/657 (49%), Gaps = 74/657 (11%)

Query: 262 FTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNN 321
             S+  LDLS NSF+  +P  L + TSL  L L  N F+G +P+ F +L+ L  L L  N
Sbjct: 99  LKSLVTLDLSLNSFSGLLPSTLGNCTSLEYLDLSNNDFSGEVPDIFGSLQNLTFLYLDRN 158

Query: 322 LDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELP 381
            +L G +P   G L  L  L +S NNL+G + E      G  + LEYL L++N L G LP
Sbjct: 159 -NLSGLIPASVGGLIELVDLRMSYNNLSGTIPELL----GNCSKLEYLALNNNKLNGSLP 213

Query: 382 KSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDA 441
            SL  L+NL  L +S NS  G +     N   L  LDLS+N   G +P   G  S L   
Sbjct: 214 ASLYLLENLGELFVSNNSLGGRLHFGSSNCKKLVSLDLSFNDFQGGVPPEIGNCSSLHSL 273

Query: 442 NLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVG 501
            +++ +  G +  S  M L+++    L+     +   N+         L+++++ + Q+ 
Sbjct: 274 VMVKCNLTGTIPSSMGM-LRKVSVIDLSD---NRLSGNIPQELGNCSSLETLKLNDNQLQ 329

Query: 502 PSFPVWLQVQTELTSVILRNVGISDTIP-GDWFSKLSSEITYLILSNNQIKGKLPRQMNS 560
              P  L    +L S+ L    +S  IP G W  K+ S +T +++ NN + G+LP ++  
Sbjct: 330 GEIPPALSKLKKLQSLELFFNKLSGEIPIGIW--KIQS-LTQMLVYNNTLTGELPVEVTQ 386

Query: 561 -PNLRSIDLSSNHFEGTLPL---WSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSW 616
             +L+ + L +N F G +P+    + + +E+ L  NRF+G +P ++     +L+   L  
Sbjct: 387 LKHLKKLTLFNNGFYGDIPMSLGLNRSLEEVDLLGNRFTGEIPPHLCH-GQKLRLFILGS 445

Query: 617 NQLSGRIPSSVCNLEDLQILSIRSNKLSG---EFPNCWYHSQMFWG-------------- 659
           NQL G+IP+S+   + L+ + +  NKLSG   EFP     S +  G              
Sbjct: 446 NQLHGKIPASIRQCKTLERVRLEDNKLSGVLPEFPESLSLSYVNLGSNSFEGSIPRSLGS 505

Query: 660 ------IDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGN 713
                 ID+S N LTG IP   G+L+SL +L LS+N L G +P  L  C  L   D+G N
Sbjct: 506 CKNLLTIDLSQNKLTGLIPPELGNLQSLGLLNLSHNYLEGPLPSQLSGCARLLYFDVGSN 565

Query: 714 QLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIG 773
            L+GS+P     +  S   L L  N   G IPQ L  L  L  + ++ N F G IP  +G
Sbjct: 566 SLNGSIPSSF-RSWKSLSTLVLSDNNFLGAIPQFLAELDRLSDLRIARNAFGGKIPSSVG 624

Query: 774 NLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSAL 833
            L +L YG                              +DLS N  TG+IP  +G L  L
Sbjct: 625 LLKSLRYG------------------------------LDLSANVFTGEIPTTLGALINL 654

Query: 834 HILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSLPNFNDPSIYEGNPLLC 890
             LN+S+N+L+G +   L SL SL+++++S+N   G IP +   ++ S + GNP LC
Sbjct: 655 ERLNISNNKLTGPL-SVLQSLKSLNQVDVSYNQFTGPIP-VNLLSNSSKFSGNPDLC 709

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  233 bits (593), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 206/674 (30%), Positives = 316/674 (46%), Gaps = 55/674 (8%)

Query: 248 CQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEF 307
           C   GI  +    +  +++ +DL+  + +  + P +  L  L KL +  NF +G IP + 
Sbjct: 56  CNWTGIACT----HLRTVTSVDLNGMNLSGTLSPLICKLHGLRKLNVSTNFISGPIPQDL 111

Query: 308 ANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLE 367
           +  + LEVLDL  N    G +P    ++  LK L L  N L G +       S    +L+
Sbjct: 112 SLCRSLEVLDLCTN-RFHGVIPIQLTMIITLKKLYLCENYLFGSIPRQIGNLS----SLQ 166

Query: 368 YLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGT 427
            L + SN+L G +P S+  L+ L+ +R   N F G IPS I    SL+ L L+ N + G+
Sbjct: 167 ELVIYSNNLTGVIPPSMAKLRQLRIIRAGRNGFSGVIPSEISGCESLKVLGLAENLLEGS 226

Query: 428 IPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPP 487
           +P+   KL  L D  L QN   G +  S   N+ RLE   L       F  ++       
Sbjct: 227 LPKQLEKLQNLTDLILWQNRLSGEIPPS-VGNISRLEVLALHE---NYFTGSIPREIGKL 282

Query: 488 FRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSN 547
            ++K + +   Q+    P  +    +   +      ++  IP ++   L+ ++ +L    
Sbjct: 283 TKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEFGHILNLKLLHLF--E 340

Query: 548 NQIKGKLPRQMNSPNL-RSIDLSSNHFEGTLPL---WSTNADELFLQDNRFSGPLPENIG 603
           N + G +PR++    L   +DLS N   GT+P    +     +L L DN+  G +P  IG
Sbjct: 341 NILLGPIPRELGELTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIG 400

Query: 604 SLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDIS 663
                   L +S N LSG IP+  C  + L +LS+ SNKLSG  P      +    + + 
Sbjct: 401 -FYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLG 459

Query: 664 NNSLTGSIP------------------------SSFGSLRSLSVLLLSNNNLSGGIPCSL 699
           +N LTGS+P                        +  G L++L  L L+NNN +G IP  +
Sbjct: 460 DNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEI 519

Query: 700 QNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDL 759
            N T +   ++  NQL+G +P  +   ++    L L  N  SG I Q L  L  L I+ L
Sbjct: 520 GNLTKIVGFNISSNQLTGHIPKELGSCVT-IQRLDLSGNKFSGYIAQELGQLVYLEILRL 578

Query: 760 SHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNP-EYSNIIADVNSIDLSWNN 818
           S N  +G IP   G+L+ L+         QL   ++    P E   + +   S+++S NN
Sbjct: 579 SDNRLTGEIPHSFGDLTRLME-------LQLGGNLLSENIPVELGKLTSLQISLNISHNN 631

Query: 819 LTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSLPNFN 878
           L+G IPD +GNL  L IL L+ N+LSG IP S+ +L SL   N+S NNL G +P    F 
Sbjct: 632 LSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPDTAVFQ 691

Query: 879 --DPSIYEGNPLLC 890
             D S + GN  LC
Sbjct: 692 RMDSSNFAGNHGLC 705

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	906
312282905	911	unnamed protein product [Thellungiella h	0.956	0.951	0.573	0.0
297826967	912	hypothetical protein ARALYDRAFT_482458 [	0.930	0.924	0.571	0.0
15226862	905	disease resistance-like protein/LRR doma	0.929	0.930	0.565	0.0
359488583	958	PREDICTED: LRR receptor-like serine/thre	0.928	0.877	0.512	0.0
359484185	990	PREDICTED: LRR receptor-like serine/thre	0.943	0.863	0.510	0.0
359496390	1113	PREDICTED: LRR receptor-like serine/thre	0.969	0.788	0.488	0.0
359488591	981	PREDICTED: probable leucine-rich repeat	0.940	0.868	0.486	0.0
225451409	1007	PREDICTED: leucine-rich repeat receptor	0.969	0.871	0.484	0.0
359488633	981	PREDICTED: LRR receptor-like serine/thre	0.942	0.870	0.477	0.0
359496717	1014	PREDICTED: brassinosteroid LRR receptor	0.967	0.864	0.48	0.0

>gi|312282905|dbj|BAJ34318.1| unnamed protein product [Thellungiella halophila]

 Score =  957 bits (2475), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/915 (57%), Positives = 643/915 (70%), Gaps = 48/915 (5%)

Query: 12  FKSICTFLILFSLSSYLGSTIKHCLADANVEVLCLDAEREGLLAFKESLTDPSGRLSSWV 71
           F S   F+IL     +         A A     C+  ERE LL FK+SLTD SGRLSSW 
Sbjct: 10  FTSFFVFIILLKNPDF---------ASAATSPRCISTEREALLTFKQSLTDLSGRLSSWS 60

Query: 72  GQDCCKWNGVYCNNQSGHVTQLNLRNPYQLINGGVGDSTAYKGSCLGGKINPSLLHLKYL 131
           G DCCKWNG+ C+ Q+  V +++LRNP Q     V +S  YK SCL GKI+ SL  LK+L
Sbjct: 61  GPDCCKWNGILCDAQTSRVIKIDLRNPSQ-----VANSDEYKRSCLRGKIHSSLTRLKFL 115

Query: 132 DTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFS 191
             LDLS NDF G+EIP+  G +  LRYLNLS SSFSGEIP  LG+LS L+ LDLYA+SFS
Sbjct: 116 SYLDLSSNDFNGSEIPDSIGHIVTLRYLNLSSSSFSGEIPASLGNLSKLESLDLYAESFS 175

Query: 192 SNSGSLALHAQNLNWLSGLSS-LKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQL 250
            +SG+ AL A NL WLSGLSS L  LN+G+V L   G  WLQ ++ L  L ELRL   QL
Sbjct: 176 -DSGAFALRASNLGWLSGLSSSLAYLNMGYVNLSGAGETWLQDLSRLSKLKELRLFNSQL 234

Query: 251 QGIPLSLPF-INFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFAN 309
           + +PLSL    N   + VLDLSENS +S IP WLF LTSL KL+LRW+F  G IP+ F N
Sbjct: 235 KNLPLSLSSSANLKLLEVLDLSENSLSSPIPNWLFGLTSLRKLFLRWDFLQGSIPSGFKN 294

Query: 310 LKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFS-GRPNNLEY 368
           LKLLE LDLSNNL L G++P + G L +LK LDLSAN LNG++H F D FS  + N+L +
Sbjct: 295 LKLLETLDLSNNLGLQGEIPSVLGDLPQLKYLDLSANELNGQIHGFLDAFSRNKGNSLVF 354

Query: 369 LDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTI 428
           LDLSSN L G LP+SLG L+NLQ L LS NSF GS+PSSIGN++SL+KLDLS+N MNG I
Sbjct: 355 LDLSSNKLAGTLPESLGALRNLQILDLSSNSFTGSVPSSIGNMASLKKLDLSFNTMNGAI 414

Query: 429 PESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPF 488
            ES GKL EL D NL+ N+WEG++ +S F+NL+ L+S RLTTEP +  V  +   W+PPF
Sbjct: 415 AESLGKLGELEDLNLMANTWEGVMGKSHFVNLRSLKSIRLTTEPNRSLVLKLPSTWIPPF 474

Query: 489 RLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNN 548
           RL+ IQIENCQ+GPSFP+WLQVQT+L  V LRN GI+DTIP  WFS +SSE+TYLIL+NN
Sbjct: 475 RLELIQIENCQIGPSFPMWLQVQTKLNFVTLRNTGIADTIPDSWFSGISSEVTYLILANN 534

Query: 549 QIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPR 608
           +IKG+LP+++  P L +IDLSSN+F+G  PLWSTNA EL L +N FSG LP NI  LMPR
Sbjct: 535 RIKGRLPQKLVFPKLNTIDLSSNNFDGPFPLWSTNATELRLYENNFSGSLPLNIDVLMPR 594

Query: 609 LQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLT 668
           ++++YL  N  +G IPSS+C +  LQILS+R+N  SG FP CW+ S M WGID S N+++
Sbjct: 595 MEKIYLFHNSFTGTIPSSLCEVSGLQILSLRNNHFSGSFPKCWHRSFMLWGIDASENNIS 654

Query: 669 GSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLS 728
           G IP S G LRSLSVLLL+ N L G IP SLQNC+GLT+IDLGGN+L+G LP W+  NLS
Sbjct: 655 GEIPESLGVLRSLSVLLLNQNALEGEIPESLQNCSGLTNIDLGGNKLTGKLPSWL-RNLS 713

Query: 729 SFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQ 788
           S FMLRL+SN  +G IP  LC++ NLHI+DLS N  SG IP+CI NL+A+ +G + EVFQ
Sbjct: 714 SLFMLRLQSNSFTGQIPDDLCSVPNLHILDLSGNKISGPIPKCISNLTAIAHGTSFEVFQ 773

Query: 789 QLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILN----------- 837
            L++ V + R  EY +I   VNSI+LS NN+TG+ P EI  LS L ILN           
Sbjct: 774 NLVYIVTRAR--EYQDI---VNSINLSGNNITGEFPAEILGLSYLRILNLSRNSMAGSIP 828

Query: 838 -------------LSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSLPNFNDPSIYE 884
                        LS N+ SGAIPQSL +++SL +LNLSFN L G IP +  F DPSIY 
Sbjct: 829 GKISELSRLETLDLSRNRFSGAIPQSLGAISSLQRLNLSFNKLEGSIPKVLKFEDPSIYI 888

Query: 885 GNPLLCGAPLPTKCP 899
           GN LLCG PLP KCP
Sbjct: 889 GNELLCGKPLPKKCP 903

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826967|ref|XP_002881366.1| hypothetical protein ARALYDRAFT_482458 [Arabidopsis lyrata subsp. lyrata] gi|297327205|gb|EFH57625.1| hypothetical protein ARALYDRAFT_482458 [Arabidopsis lyrata subsp. lyrata]

 Score =  949 bits (2452), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/882 (57%), Positives = 627/882 (71%), Gaps = 39/882 (4%)

Query: 45  CLDAEREGLLAFKESLTDPSGRLSSWVGQDCCKWNGVYCNNQSGHVTQLNLRNPYQLING 104
           C+  ER+ LL F+ SLTD S RL SW G DCC W GV C+ ++  V +++LRNP Q +  
Sbjct: 35  CISTERQALLTFRASLTDLSSRLLSWSGPDCCNWPGVLCDARTSRVIKIDLRNPNQDVR- 93

Query: 105 GVGDSTAYKGSCLGGKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFS 164
               S  YK   L GK++PSL  LK+L  LDLS NDF G EIPE+ GQ+ +LRYLNLS S
Sbjct: 94  ----SDEYKRGSLRGKLHPSLTQLKFLSYLDLSSNDFNGLEIPEFIGQIASLRYLNLSSS 149

Query: 165 SFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSS-LKLLNLGFVKL 223
           SFSGEIP  LG+LS L+ LDLYA+SF  +SG+ +LHA NL WLSGLSS LK LN+G+V L
Sbjct: 150 SFSGEIPASLGNLSKLESLDLYAESFG-DSGTFSLHASNLRWLSGLSSSLKYLNMGYVNL 208

Query: 224 DHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPF-INFTSISVLDLSENSFNSAIPPW 282
              G  WLQ  + +  L ELRL  C+L+ +P SL    +   + VLDLSENS NS IP W
Sbjct: 209 SGAGETWLQDFSRVKVLKELRLFNCELKNLPPSLSSSADLKLLEVLDLSENSLNSPIPNW 268

Query: 283 LFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLD 342
           LF LT+L KL+LRW+F  G IP+ F NLKLLE LDLSNNL+L G++P + G L RLK LD
Sbjct: 269 LFGLTNLRKLFLRWDFLQGSIPSGFKNLKLLETLDLSNNLELQGEIPSVLGDLPRLKFLD 328

Query: 343 LSANNLNGEVHEFFDGFS-GRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFW 401
           LSAN LNG+++ F D FS  + N+L +LDLSSN   G LP+SLG L+NLQ L LS NSF 
Sbjct: 329 LSANELNGQINGFLDAFSRNKGNSLVFLDLSSNKFAGTLPESLGALRNLQILDLSSNSFT 388

Query: 402 GSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLK 461
           GS+PSSIGN+ SL KLDLSYN MNGTI ES G+L+ELVD NL++N+W G+LQ+S FMNL+
Sbjct: 389 GSVPSSIGNMVSLNKLDLSYNAMNGTIAESLGQLAELVDLNLMENAWGGVLQKSHFMNLR 448

Query: 462 RLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRN 521
            L+S RLTTEP +  VF +   W+PPFRL+ IQIENC++GPSFP+WLQVQT+L  V LRN
Sbjct: 449 SLKSIRLTTEPYRSLVFKLPSAWIPPFRLELIQIENCRIGPSFPMWLQVQTKLNFVTLRN 508

Query: 522 VGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWS 581
            GI DTIP  WF+ +SSE+TYLIL+NN+IKG+LP+ +  P L +IDLSSN+FEG  PLWS
Sbjct: 509 TGIEDTIPDSWFAGISSEVTYLILANNRIKGRLPQNLAFPKLNTIDLSSNNFEGPFPLWS 568

Query: 582 TNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSN 641
           TNA EL L +N FSG LP NI  LMPR+Q++YL  N  +G IPSS+C +  LQILS+R N
Sbjct: 569 TNATELRLYENNFSGSLPLNIDVLMPRMQKIYLFRNSFTGNIPSSLCEVSGLQILSLRKN 628

Query: 642 KLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQN 701
           + SG FP CW+   M WGID+S N+L+G IP S G L SLSVLLL+ N L G IP SLQN
Sbjct: 629 RFSGSFPKCWHRQFMLWGIDVSENNLSGEIPESLGMLPSLSVLLLNQNVLEGKIPESLQN 688

Query: 702 CTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSH 761
           C+GLT+IDLGGN+L+G LP W+ + LSS FMLRL+SN  +G IP  LC++ NL I+DLS 
Sbjct: 689 CSGLTNIDLGGNKLTGKLPSWVGK-LSSLFMLRLQSNSFTGAIPDDLCSVPNLRILDLSG 747

Query: 762 NNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTG 821
           N  SG IP+CI NL+A+  G ++EVFQ L++ V + R  EY +I    NSI+LS NN++G
Sbjct: 748 NKISGPIPKCISNLTAIARGTSNEVFQNLVFIVTRAR--EYEDI---ANSINLSGNNISG 802

Query: 822 QIPDE------------------------IGNLSALHILNLSHNQLSGAIPQSLSSLASL 857
           +IP E                        I  L+ L  L+LS N+ SG IPQSL++++SL
Sbjct: 803 EIPREILGLLYLRILNLSRNSIAGSIPERISELARLETLDLSRNKFSGPIPQSLAAISSL 862

Query: 858 SKLNLSFNNLAGKIPSLPNFNDPSIYEGNPLLCGAPLPTKCP 899
            +LNLS+N L G IP L  F DPSIY GN LLCG PLP KCP
Sbjct: 863 QRLNLSYNKLEGSIPKLLKFQDPSIYVGNELLCGNPLPKKCP 904

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15226862|ref|NP_181039.1| disease resistance-like protein/LRR domain-containing protein [Arabidopsis thaliana] gi|13272423|gb|AAK17150.1|AF325082_1 putative disease resistance protein [Arabidopsis thaliana] gi|3033389|gb|AAC12833.1| putative disease resistance protein [Arabidopsis thaliana] gi|17380976|gb|AAL36300.1| putative disease resistance protein [Arabidopsis thaliana] gi|21436087|gb|AAM51244.1| putative disease resistance protein [Arabidopsis thaliana] gi|330253947|gb|AEC09041.1| disease resistance-like protein/LRR domain-containing protein [Arabidopsis thaliana]

 Score =  926 bits (2393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/882 (56%), Positives = 624/882 (70%), Gaps = 40/882 (4%)

Query: 45  CLDAEREGLLAFKESLTDPSGRLSSWVGQDCCKWNGVYCNNQSGHVTQLNLRNPYQLING 104
           C+  ER+ LL F+ +LTD S RL SW G DCC W GV C+ ++ HV +++LRNP Q +  
Sbjct: 33  CISTERQALLTFRAALTDLSSRLFSWSGPDCCNWPGVLCDARTSHVVKIDLRNPSQDVR- 91

Query: 105 GVGDSTAYKGSCLGGKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFS 164
               S  YK   L GKI+PSL  LK+L  LDLS NDF   EIPE+ GQ+ +LRYLNLS S
Sbjct: 92  ----SDEYKRGSLRGKIHPSLTQLKFLSYLDLSSNDFNELEIPEFIGQIVSLRYLNLSSS 147

Query: 165 SFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSL-KLLNLGFVKL 223
           SFSGEIP  LG+LS L+ LDLYA+SF  +SG+L+L A NL WLS LSS  K LN+G+V L
Sbjct: 148 SFSGEIPTSLGNLSKLESLDLYAESFG-DSGTLSLRASNLRWLSSLSSSLKYLNMGYVNL 206

Query: 224 DHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPF-INFTSISVLDLSENSFNSAIPPW 282
              G  WLQ  + + +L EL L   +L+ +P +L    +   + VLDLSENS NS IP W
Sbjct: 207 SGAGETWLQDFSRISALKELHLFNSELKNLPPTLSSSADLKLLEVLDLSENSLNSPIPNW 266

Query: 283 LFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLD 342
           LF LT+L KL+LRW+F  G IP  F NLKLLE LDLSNNL L G++P + G L +LK LD
Sbjct: 267 LFGLTNLRKLFLRWDFLQGSIPTGFKNLKLLETLDLSNNLALQGEIPSVLGDLPQLKFLD 326

Query: 343 LSANNLNGEVHEFFDGFS-GRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFW 401
           LSAN LNG++H F D FS  + N+L +LDLSSN L G LP+SLG+L+NLQ L LS NSF 
Sbjct: 327 LSANELNGQIHGFLDAFSRNKGNSLVFLDLSSNKLAGTLPESLGSLRNLQTLDLSSNSFT 386

Query: 402 GSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLK 461
           GS+PSSIGN++SL+KLDLS N MNGTI ES G+L+ELVD NL+ N+W G+LQ+S F+NL+
Sbjct: 387 GSVPSSIGNMASLKKLDLSNNAMNGTIAESLGQLAELVDLNLMANTWGGVLQKSHFVNLR 446

Query: 462 RLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRN 521
            L+S RLTTEP +  VF +   W+PPFRL+ IQIENC++G  FP+WLQVQT+L  V LRN
Sbjct: 447 SLKSIRLTTEPYRSLVFKLPSTWIPPFRLELIQIENCRIG-LFPMWLQVQTKLNFVTLRN 505

Query: 522 VGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWS 581
            GI DTIP  WFS +SS++TYLIL+NN+IKG+LP+++  P L +IDLSSN+FEGT PLWS
Sbjct: 506 TGIEDTIPDSWFSGISSKVTYLILANNRIKGRLPQKLAFPKLNTIDLSSNNFEGTFPLWS 565

Query: 582 TNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSN 641
           TNA EL L +N FSG LP+NI  LMPR++++YL  N  +G IPSS+C +  LQILS+R N
Sbjct: 566 TNATELRLYENNFSGSLPQNIDVLMPRMEKIYLFSNSFTGNIPSSLCEVSGLQILSLRKN 625

Query: 642 KLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQN 701
             SG FP CW+   M WGID+S N+L+G IP S G L SLSVLLL+ N+L G IP SL+N
Sbjct: 626 HFSGSFPKCWHRQFMLWGIDVSENNLSGEIPESLGMLPSLSVLLLNQNSLEGKIPESLRN 685

Query: 702 CTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSH 761
           C+GLT+IDLGGN+L+G LP W+ + LSS FMLRL+SN  +G IP  LCN+ NL I+DLS 
Sbjct: 686 CSGLTNIDLGGNKLTGKLPSWVGK-LSSLFMLRLQSNSFTGQIPDDLCNVPNLRILDLSG 744

Query: 762 NNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTG 821
           N  SG IP+CI NL+A+  G N+EVFQ L++ V + R  EY  I    NSI+LS NN++G
Sbjct: 745 NKISGPIPKCISNLTAIARGTNNEVFQNLVFIVTRAR--EYEAI---ANSINLSGNNISG 799

Query: 822 QIPDE------------------------IGNLSALHILNLSHNQLSGAIPQSLSSLASL 857
           +IP E                        I  LS L  L+LS N+ SGAIPQS ++++SL
Sbjct: 800 EIPREILGLLYLRILNLSRNSMAGSIPEKISELSRLETLDLSKNKFSGAIPQSFAAISSL 859

Query: 858 SKLNLSFNNLAGKIPSLPNFNDPSIYEGNPLLCGAPLPTKCP 899
            +LNLSFN L G IP L  F DPSIY GN LLCG PLP KCP
Sbjct: 860 QRLNLSFNKLEGSIPKLLKFQDPSIYIGNELLCGKPLPKKCP 901

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488583|ref|XP_003633782.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  806 bits (2082), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/886 (51%), Positives = 590/886 (66%), Gaps = 45/886 (5%)

Query: 45  CLDAEREGLLAFKESLTDPSGRLSSWVGQDCCKWNGVYCNNQSGHVTQLNLRNPYQLING 104
           CL+ E+EGLL FK+ LTDPSGRLSSWVG+DCCKW GV C N++G V +L L NP+   N 
Sbjct: 3   CLEVEKEGLLKFKQGLTDPSGRLSSWVGEDCCKWRGVSCYNRTGRVIKLKLGNPFP--NS 60

Query: 105 GVGDSTAYKGSCLGGKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFS 164
             GD TA   S LGG+INPSLL LKYL+ LDLS N+FEG EIP++ G L+ LRYLNLS +
Sbjct: 61  LEGDRTA---SELGGEINPSLLSLKYLNYLDLSKNNFEGMEIPKFIGSLRKLRYLNLSGA 117

Query: 165 SFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLD 224
           SF G IPP + +LS+L+YLDL       N+ S+  +   L WLSGLSSLK LNLG + L 
Sbjct: 118 SFGGIIPPNIANLSNLRYLDL-------NTYSIEPNKNGLEWLSGLSSLKYLNLGGIDLS 170

Query: 225 HVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLF 284
              A WLQ VN LPSL+EL +  CQL  + LSLPF+NFTS+S+LDLS N F+S IP WLF
Sbjct: 171 KAAAYWLQTVNTLPSLLELHMPNCQLSNLSLSLPFLNFTSLSILDLSNNGFDSTIPHWLF 230

Query: 285 SLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLS 344
           +L+SL  L L  N   G +P+ F N   L++LDLS N ++ G+LP+  G L  L++L LS
Sbjct: 231 NLSSLVYLDLNSNNLQGGLPDAFQNFTSLQLLDLSKNSNIEGELPRTLGNLCYLRTLILS 290

Query: 345 ANNLNGEVHEFFDGFSG-RPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGS 403
            N L+GE+ EF DG S    + LE LDL  N L G LP SLG+LKNL+YL+L  NSF GS
Sbjct: 291 VNKLSGEIAEFLDGLSACSYSTLENLDLGFNKLTGNLPDSLGHLKNLRYLQLWSNSFRGS 350

Query: 404 IPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRL 463
           IP SIG+LSSL++L LS N M G IP+S G+LS LV   L +NSWEG++ E+ F NL  L
Sbjct: 351 IPESIGSLSSLQELYLSQNQMGGIIPDSLGQLSSLVVLELNENSWEGVITEAHFANLSSL 410

Query: 464 ESFRLT-TEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNV 522
           +   +T + P    VFN+S +W PPF+L  I + +CQ+GP FP WL+ Q ELT+++L N 
Sbjct: 411 KQLSITKSSPNVSLVFNISSDWAPPFKLTYINLRSCQLGPKFPTWLRTQNELTTIVLNNA 470

Query: 523 GISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWST 582
           GIS TIP DW  KL  +++ L ++ NQ+ G++P  +    L ++DLSSN F+G LPLWS+
Sbjct: 471 GISGTIP-DWLWKLDLQLSELDIAYNQLSGRVPNSLVFSYLANVDLSSNLFDGPLPLWSS 529

Query: 583 NADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNK 642
           N   L+L+ N FSGP+P+NIG +MP L  L +SWN L+G IP S+ +L+ L  L I +N 
Sbjct: 530 NVSTLYLRGNLFSGPIPQNIGQVMPILTDLDISWNSLNGSIPLSMGDLQALITLVISNNN 589

Query: 643 LSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNC 702
           LSGE P  W      + +D+SNNSL+G+IP S GSL +L  L+LSNNNLSG +P  LQNC
Sbjct: 590 LSGEIPQFWNKMPSLYIVDMSNNSLSGTIPRSLGSLTALRFLVLSNNNLSGELPSQLQNC 649

Query: 703 TGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHN 762
           + L S+DLG N+ SG++P WI E++ S  +L L+SN  SG+IP  +C L  LHI+DLSHN
Sbjct: 650 SVLESLDLGDNKFSGNIPSWIGESMPSLLILALQSNFFSGNIPSEICALSALHILDLSHN 709

Query: 763 NFSGAIPRCIGNLSAL---VYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSID------ 813
           + SG IP C GNLS     +  ++ E ++  +  V KGR  EY + +  VNS+D      
Sbjct: 710 HVSGFIPPCFGNLSGFKSELSDDDLERYEGRLKLVAKGRALEYYSTLYLVNSLDLSNNSL 769

Query: 814 ------------------LSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLA 855
                             LS NNL G IP++IGNL  L  L+LS N+LSG IP S++S+ 
Sbjct: 770 SGEIPIELTSLLKLGTLNLSSNNLGGNIPEKIGNLQWLETLDLSKNKLSGPIPMSMASIT 829

Query: 856 SLSKLNLSFNNLAGKIPSLPNFN---DPSIYEGNPLLCGAPLPTKC 898
            L  LNL+ NNL+GKIP+   F    DPSIY+GN  LCG PL T+C
Sbjct: 830 FLVHLNLAHNNLSGKIPTGNQFQTLIDPSIYQGNLALCGFPLTTEC 875

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484185|ref|XP_002273824.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  805 bits (2080), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/899 (51%), Positives = 590/899 (65%), Gaps = 44/899 (4%)

Query: 31  TIKHCLADANVEVLCLDAEREGLLAFKESLTDPSGRLSSWVGQDCCKWNGVYCNNQSGHV 90
           TIK    DAN  + CL+ E+E LL FK+ LTDPSGRLSSWVG+DCCKW GV CNN++G V
Sbjct: 22  TIKLSSCDANQNMDCLEVEKEALLKFKQGLTDPSGRLSSWVGEDCCKWRGVSCNNRTGRV 81

Query: 91  TQLNLRNPYQLINGGVGDSTAYKGSCLGGKINPSLLHLKYLDTLDLSLNDFEGAEIPEYF 150
            +L L NP+   N   GD TA   S LGG+INPSLL LKYL+ LDLS+N+F G EIP++ 
Sbjct: 82  IKLKLGNPFP--NSLEGDGTA---SELGGEINPSLLSLKYLNYLDLSMNNFGGMEIPKFI 136

Query: 151 GQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGL 210
           G L  LRYLNLS +SF G IPP + +LS+L+YLDL       N+ S+  +   L WLSGL
Sbjct: 137 GSLGKLRYLNLSGASFGGMIPPNIANLSNLRYLDL-------NTYSIEPNKNGLEWLSGL 189

Query: 211 SSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDL 270
           SSLK LNLG + L    A WLQ +N LPSL+EL +  CQL    LSLPF+NFTS+S+LDL
Sbjct: 190 SSLKYLNLGGIDLSEAAAYWLQTINTLPSLLELHMPNCQLSNFSLSLPFLNFTSLSILDL 249

Query: 271 SENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPK 330
           S N F+S IP WLF+L+SL  L L  N   G +P+ F N   L++LDLS N ++ G+ P+
Sbjct: 250 SNNEFDSTIPHWLFNLSSLVYLDLNSNNLQGGLPDAFQNFTSLQLLDLSQNSNIEGEFPR 309

Query: 331 LFGILRRLKSLDLSANNLNGEVHEFFDGFSG-RPNNLEYLDLSSNSLEGELPKSLGNLKN 389
             G L  L++L LS N L+GE+ EF DG S    + LE LDL  N L G LP SLG+LKN
Sbjct: 310 TLGNLCCLRTLILSVNKLSGEITEFLDGLSACSYSTLENLDLGFNELTGNLPDSLGHLKN 369

Query: 390 LQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWE 449
           L+YL+L  NSF GSIP SIG LSSL++L LS N M G IP+S G+LS LV   L  NSWE
Sbjct: 370 LRYLQLRSNSFSGSIPESIGRLSSLQELYLSQNQMGGIIPDSLGQLSSLVVLELNGNSWE 429

Query: 450 GILQESQFMNLKRLESFRLT-TEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWL 508
           G++ E+ F NL  L+   +T + P    VFNVS +W PPF+L  I + +CQ+GP FP WL
Sbjct: 430 GVITEAHFANLSSLKQLSITRSSPNVSLVFNVSSDWAPPFKLTYINLRSCQLGPKFPTWL 489

Query: 509 QVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDL 568
           + Q ELT+V+L N  IS TIP DW  KL+ ++  L ++ NQ+ G++P  +    L ++DL
Sbjct: 490 RSQNELTTVVLNNARISGTIP-DWLWKLNLQLRELDIAYNQLSGRVPNSLVFSYLANVDL 548

Query: 569 SSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVC 628
           SSN F+G LPLWS+N   L+L+DN FSGP+P+NI  +MP L  L +S N L+G IP S+ 
Sbjct: 549 SSNLFDGPLPLWSSNVSTLYLRDNLFSGPIPQNIAQVMPILTDLDISRNSLNGSIPWSMG 608

Query: 629 NLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSN 688
           NL+ L  L I +N LSGE P  W      + ID+SNNSL+G+IP S GSL +L  L+LS+
Sbjct: 609 NLQALITLVISNNNLSGEIPQFWNKMPSLYIIDMSNNSLSGTIPRSLGSLTALRFLVLSD 668

Query: 689 NNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRL 748
           NNLSG +P  LQNC+ L S+DLG N+ SG++P WI E++SS  +L LRSN  SG IP  +
Sbjct: 669 NNLSGELPSQLQNCSALESLDLGDNKFSGNIPSWIGESMSSLLILALRSNFFSGKIPSEI 728

Query: 749 CNLQNLHIIDLSHNNFSGAIPRCIGNLSAL---VYGNNSEVFQQLIWRVVKGRNPEYSNI 805
           C L  LHI+DLSHNN SG IP C GNLS     +  ++   ++  +  V KGR  EY +I
Sbjct: 729 CALSALHILDLSHNNVSGFIPPCFGNLSGFKSELSDDDLARYEGSLKLVAKGRALEYYDI 788

Query: 806 IADVNSIDLSWNNLTGQIPDE------------------------IGNLSALHILNLSHN 841
           +  VNS+DLS N+L+G+IP E                        IGNL  L  L+LS N
Sbjct: 789 LYLVNSLDLSNNSLSGEIPIELTSLLKLGTLNLSSNNLGGTIPENIGNLQWLETLDLSRN 848

Query: 842 QLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSLPNFN--DPSIYEGNPLLCGAPLPTKC 898
           +LSG IP ++ S+  L+ LNL+ NNL+GKIP+   F   D SIY+GN  LCG PL T+C
Sbjct: 849 KLSGRIPMTMVSMTFLAHLNLAHNNLSGKIPTGNQFQTFDQSIYQGNLALCGFPLTTEC 907

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496390|ref|XP_002268557.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/925 (48%), Positives = 592/925 (64%), Gaps = 47/925 (5%)

Query: 14   SICTFLILFSLSSYLG-STIKHCLADANVEVLCLDAEREGLLAFKESLTDPSGRLSSWVG 72
            SI   L++F  S++L   T+K    +  + V C + ER+ L+ FK+ LTDPSGRLSSWVG
Sbjct: 111  SIHFLLLIFLSSTFLHLETVKLGSCNGVLNVSCTEIERKALVDFKQGLTDPSGRLSSWVG 170

Query: 73   QDCCKWNGVYCNNQSGHVTQLNLRNPYQLINGGVGDSTA----YKGSC--LGGKINPSLL 126
             DCC+W GV C+ ++  V +L LRN Y       G++T     Y G+    GG+I+ SLL
Sbjct: 171  LDCCRWRGVVCSQRAPQVIKLKLRNQYARSPDADGEATGAFGDYYGAAHAFGGEISHSLL 230

Query: 127  HLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLY 186
             LKYL  LDLS+N F G +IP++ G  K LRYLNLS +SF G IPP LG+LSSL YLDL 
Sbjct: 231  DLKYLRYLDLSMNYFGGLKIPKFIGSFKRLRYLNLSGASFGGTIPPHLGNLSSLLYLDL- 289

Query: 187  ADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLH 246
                  NS SL     +L+WLSGLSSL+ LNLG +      A W +AV+ L SL+ELRL 
Sbjct: 290  ------NSYSLESVENDLHWLSGLSSLRHLNLGNIDFSKTAAYWHRAVSSLSSLLELRLP 343

Query: 247  YCQLQGIP-LSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPN 305
             C L  +P LSLPF N TS+S+LDLS N FNS+IP WLF+ +SL  L L  N   G +P+
Sbjct: 344  GCGLSSLPDLSLPFGNVTSLSMLDLSNNGFNSSIPHWLFNFSSLAYLDLNSNNLQGSVPD 403

Query: 306  EFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPN- 364
             F  L  L+ +DLS+NL +GG LP   G L  L++L LS N+++GE+  F DG S   N 
Sbjct: 404  GFGFLISLKYIDLSSNLFIGGHLPGNLGKLCNLRTLKLSFNSISGEITGFMDGLSECVNG 463

Query: 365  -NLEYLDLSSN-SLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYN 422
             +LE LDL  N  L G LP +LG+LKNL++LRL  NSF GSIP+SIGNLSSL++  +S N
Sbjct: 464  SSLESLDLGFNDKLGGFLPDALGHLKNLKFLRLWSNSFVGSIPNSIGNLSSLKEFYISEN 523

Query: 423  GMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLT-TEPTKKFVFNVS 481
             MNG IPES G+LS LV  +L +N W G++ ES F NL  L    +    P     FNVS
Sbjct: 524  QMNGIIPESVGQLSALVAVDLSENPWVGVITESHFSNLTNLTELAIKKVSPNVTLAFNVS 583

Query: 482  YNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEIT 541
              W+PPF+L  +++  CQ+GP FP WL+ Q +L +++L N  ISDTIP DWF KL  ++ 
Sbjct: 584  SKWIPPFKLNYLELRTCQLGPKFPAWLRNQNQLKTLVLNNARISDTIP-DWFWKLDLQLN 642

Query: 542  YLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPEN 601
             L ++NNQ+ G++P  +  P    +DLSSN F G +P +S+N   L+L+DN FSGP+P +
Sbjct: 643  LLDVANNQLSGRVPNSLKFPKNAVVDLSSNRFHGPIPHFSSNLSSLYLRDNLFSGPIPLD 702

Query: 602  IGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGID 661
            +G  MP L    +SWN L+G IP S+  +  L  L + +N LSGE P  W      + +D
Sbjct: 703  VGKTMPWLTNFDVSWNSLNGTIPLSIGKITGLASLVLSNNHLSGEIPLIWNDKPDLYIVD 762

Query: 662  ISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPL 721
            ++NNSL+G IPSS G+L SL  L+LS N LSG IP SLQNC  + S DLG N+LSG+LP 
Sbjct: 763  MANNSLSGEIPSSMGTLNSLMFLILSGNKLSGEIPSSLQNCKIMDSFDLGDNRLSGNLPS 822

Query: 722  WISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYG 781
            WI E + S  +LRLRSN   G+IP ++C+L +LHI+DL+H+N SG IP C+GNLS +   
Sbjct: 823  WIGE-MQSLLILRLRSNFFDGNIPSQVCSLSHLHILDLAHDNLSGFIPSCLGNLSGMATE 881

Query: 782  NNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNN----------------------- 818
             +SE ++  +  V+KGR   Y N +  VNSIDLS NN                       
Sbjct: 882  ISSERYEGQLSVVMKGRELIYQNTLYLVNSIDLSDNNLSGKLPELRNLSRLGTLNLSINH 941

Query: 819  LTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPS---LP 875
            LTG IP++IG+LS L  L+LS NQLSG IP S+ SL SL+ LNLS+N L+GKIP+     
Sbjct: 942  LTGNIPEDIGSLSQLETLDLSRNQLSGPIPPSMVSLTSLNHLNLSYNKLSGKIPTSNQFQ 1001

Query: 876  NFNDPSIYEGNPLLCGAPLPTKCPG 900
             FNDPSIY+ N +LCG PLP KCPG
Sbjct: 1002 TFNDPSIYKNNLVLCGEPLPMKCPG 1026

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488591|ref|XP_003633783.1| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Vitis vinifera]

 Score =  756 bits (1951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/921 (48%), Positives = 572/921 (62%), Gaps = 69/921 (7%)

Query: 18  FLILFSLSSYLGSTIKHCLADANVEVLCLDAEREGLLAFKESLTDPSGRLSSWVGQDCCK 77
           FLI+ S        IK      + +  C+D E+  LL FK+ LTDPSGRLSSWVG+DCCK
Sbjct: 12  FLIITSSGFLFHEIIKVGSCQGDHQRGCIDTEKVALLKFKQGLTDPSGRLSSWVGEDCCK 71

Query: 78  WNGVYCNNQSGHVTQLNLRNPYQLINGGVGDSTAYKGSCLGGKINPSLLHLKYLDTLDLS 137
           W GV CNN+SGHV +L LR           DS   +G  LGGKI+P+LL LKYL+ LDLS
Sbjct: 72  WRGVVCNNRSGHVIKLTLR---------YLDSDGTEGE-LGGKISPALLDLKYLNYLDLS 121

Query: 138 LNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDL--YADSFSSNSG 195
           +N+F G  IPE+ G L+ LRYLNLS +SF G IPPQLG+LSSL YLDL  Y D  S +  
Sbjct: 122 MNNFGGIPIPEFIGSLEKLRYLNLSGASFGGPIPPQLGNLSSLHYLDLKEYFDESSQD-- 179

Query: 196 SLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPL 255
                  +L+W+SGL+SL+ LNLG V L    A WLQAV+ + SL+EL L  C L  +P 
Sbjct: 180 -------DLHWISGLTSLRHLNLGGVDLSQAAAYWLQAVSKISSLLELHLPACALADLPP 232

Query: 256 SLPFINF-TSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLE 314
           SLPF +  TS+SV+DLS N FNS IP WLF + +L  L L  N   G I + FAN   +E
Sbjct: 233 SLPFSSLITSLSVIDLSSNGFNSTIPHWLFQMRNLVYLDLSSNNLRGSILDSFANRTSIE 292

Query: 315 VLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNN-LEYLDLSS 373
            L             +  G L  LK+L LS N+LNGE+ E  D  SG  ++ LE LDL  
Sbjct: 293 RL-------------RNMGSLCNLKTLILSQNDLNGEITELIDVLSGCNSSWLETLDLGF 339

Query: 374 NSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFG 433
           N L G LP SLG L NL+ L L  NSF GSIPSSIGNLS L +L LS N MNGTIPE+ G
Sbjct: 340 NDLGGFLPNSLGKLHNLKSLWLWDNSFVGSIPSSIGNLSHLEELYLSDNSMNGTIPETLG 399

Query: 434 KLSELVDANLLQNSWEGILQESQFMNLKRLESF-RLTTEPTKKFVFNVSYNWVPPFRLKS 492
            LS+LV   L +N   G++ E+ F NL  L+ F      P    VFN+S  W+PPF+L  
Sbjct: 400 GLSKLVAIELSENPLMGVVTEAHFSNLTSLKEFSNYRVTPRVSLVFNISPEWIPPFKLSL 459

Query: 493 IQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKG 552
           ++I +CQ+GP FP WL+ QTELTSV+L N  IS TIP +WF KL   +  L + +N + G
Sbjct: 460 LRIRSCQMGPKFPAWLRNQTELTSVVLSNARISGTIP-EWFWKLDLHLDELDIGSNNLGG 518

Query: 553 KLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRL 612
           ++P  M      ++DL  N+F+G LPLWS+N   L L DN FSGP+P+ +G  M  L  L
Sbjct: 519 RVPNSMKFLPGATVDLEENNFQGPLPLWSSNVTRLNLYDNFFSGPIPQELGERMSMLTDL 578

Query: 613 YLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIP 672
            LSWN L G IP S   L +L  L I +N LSG  P  W      + +D++NN+L+G +P
Sbjct: 579 DLSWNALYGTIPLSFGKLTNLLTLVISNNHLSGGIPEFWNGLPDLYVLDMNNNNLSGELP 638

Query: 673 SSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFM 732
           SS GSLR +  L++SNN+LSG IP +LQNCT + ++DLGGN+ SG++P WI E + +  +
Sbjct: 639 SSMGSLRFVRFLMISNNHLSGEIPSALQNCTAIHTLDLGGNRFSGNVPAWIGERMPNLLI 698

Query: 733 LRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQ--L 790
           LRLRSNL  G IP +LC L +LHI+DL  NN SG IP C+GNLS +V   +S+ ++   +
Sbjct: 699 LRLRSNLFHGSIPSQLCTLSSLHILDLGENNLSGFIPSCVGNLSGMVSEIDSQRYEAELM 758

Query: 791 IWRVVKGRNPEYSNIIADVNSIDLSWNN------------------------LTGQIPDE 826
           +WR  KGR   Y +I+  VNS+DLS NN                        LTG+IPD+
Sbjct: 759 VWR--KGREDLYKSILYLVNSMDLSNNNLSGEVPEGVTNLSRLGTLNLSINHLTGKIPDK 816

Query: 827 IGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPS---LPNFNDPSIY 883
           I +L  L  L+LS NQLSG IP  ++SL SL+ LNLS+NNL+G+IP+   L   +DPSIY
Sbjct: 817 IASLQGLETLDLSRNQLSGVIPPGMASLTSLNHLNLSYNNLSGRIPTGNQLQTLDDPSIY 876

Query: 884 EGNPLLCGAPLPTKCPGKHSP 904
           E NP LCG P   KCPG   P
Sbjct: 877 ENNPALCGPPTTAKCPGDDEP 897

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451409|ref|XP_002273126.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/925 (48%), Positives = 587/925 (63%), Gaps = 47/925 (5%)

Query: 14  SICTFLILFSLSSYLG-STIKHCLADANVEVLCLDAEREGLLAFKESLTDPSGRLSSWVG 72
           SI   L++F  S++L   T+K    +  + V C + ER+ L+ FK+ LTDPSGRLSSWVG
Sbjct: 7   SIHFLLLIFLSSTFLYLETVKLGSCNGVLNVSCTEIERKALVDFKQGLTDPSGRLSSWVG 66

Query: 73  QDCCKWNGVYCNNQSGHVTQLNLRNPY-QLINGGVGDSTAYK-----GSCLGGKINPSLL 126
            DCC+W+GV C+ +   V +L LRN Y +  +    D+ A++         GG+I+ SLL
Sbjct: 67  LDCCRWSGVVCSQRVPRVIKLKLRNQYARTPDANDEDTGAFEDDYGAAHAFGGEISHSLL 126

Query: 127 HLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLY 186
            LK L  LDLS+N+FEG +IP++ G  K LRYLNLS +SF G IPP LG+LSSL YLDL 
Sbjct: 127 DLKDLRYLDLSMNNFEGLQIPKFIGSFKRLRYLNLSGASFGGTIPPHLGNLSSLLYLDL- 185

Query: 187 ADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLH 246
                 NS SL     +L+WLSGLSSL+ LNLG + L    A W +AVN L SL+ELRL 
Sbjct: 186 ------NSYSLESVEDDLHWLSGLSSLRHLNLGNIDLSKAAAYWHRAVNSLSSLLELRLP 239

Query: 247 YCQLQGIP-LSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPN 305
            C L  +P L LPF N TS+ VLDLS N FNS+IP WLF+ +SL  L L  N   G +P 
Sbjct: 240 RCGLSSLPDLPLPFFNVTSLLVLDLSNNDFNSSIPHWLFNFSSLAYLDLNSNNLQGSVPE 299

Query: 306 EFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNN 365
            F  L  L+ +D S+NL +GG LP+  G L  L++L LS N+++GE+ EF DG S   N+
Sbjct: 300 GFGYLISLKYIDFSSNLFIGGHLPRDLGKLCNLRTLKLSFNSISGEITEFMDGLSECVNS 359

Query: 366 --LEYLDLSSN-SLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYN 422
             LE LDL  N  L G LP SLG+LKNL+ L L  NSF GSIP+SIGNLSSL+   +S N
Sbjct: 360 SSLESLDLGFNYKLGGFLPNSLGHLKNLKSLHLWSNSFVGSIPNSIGNLSSLQGFYISEN 419

Query: 423 GMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLT-TEPTKKFVFNVS 481
            MNG IPES G+LS LV  +L +N W G++ ES F NL  L    +  + P    VFNV+
Sbjct: 420 QMNGIIPESVGQLSALVALDLSENPWVGVVTESHFSNLTSLTELAIKKSSPNITLVFNVN 479

Query: 482 YNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEIT 541
             W+PPF+L  +++  CQ+GP FP WL+ Q +L +++L N  ISDTIP DWF KL  ++ 
Sbjct: 480 SKWIPPFKLNYLELRTCQLGPKFPAWLRTQNQLKTIVLNNARISDTIP-DWFWKLDLQLE 538

Query: 542 YLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPEN 601
            L ++NNQ+ G++P  +  P    +DLSSN F G  P +S+N   L+L+DN FSGP+P +
Sbjct: 539 LLDVANNQLSGRVPNSLKFPENAVVDLSSNRFHGPFPHFSSNLSSLYLRDNLFSGPIPRD 598

Query: 602 IGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGID 661
           +G  MP L    +SWN L+G IP S+  +  L  L + +N LSGE P  W      + +D
Sbjct: 599 VGKTMPWLTNFDVSWNSLNGTIPLSIGKITGLASLVLSNNHLSGEIPLIWNDKPDLYIVD 658

Query: 662 ISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPL 721
           + NNSL+G IPSS G+L SL  L+LS N LSG IP SLQNC  + S DLG N+LSG+LP 
Sbjct: 659 MENNSLSGEIPSSMGTLNSLMFLILSGNKLSGEIPSSLQNCKDMDSFDLGDNRLSGNLPS 718

Query: 722 WISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYG 781
           WI E + S  +LRLRSNL  G+IP ++C+L +LHI+DL+HNN SG++P C+GNLS +   
Sbjct: 719 WIGE-MQSLLILRLRSNLFDGNIPSQVCSLSHLHILDLAHNNLSGSVPSCLGNLSGMATE 777

Query: 782 NNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNN----------------------- 818
            +SE ++  +  V+KGR   Y N +  VNSIDLS NN                       
Sbjct: 778 ISSERYEGQLSVVMKGRELIYQNTLYLVNSIDLSDNNISGKLPELRNLSRLGTLNLSINH 837

Query: 819 LTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPS---LP 875
           LTG IP+++G+LS L  L+LS NQLSG IP S+ S+ SL+ LNLS+N L+GKIP+     
Sbjct: 838 LTGNIPEDVGSLSQLETLDLSRNQLSGLIPPSMVSMTSLNHLNLSYNRLSGKIPTSNQFQ 897

Query: 876 NFNDPSIYEGNPLLCGAPLPTKCPG 900
            FNDPSIY  N  LCG PL   CPG
Sbjct: 898 TFNDPSIYRNNLALCGEPLAMTCPG 922

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488633|ref|XP_002264905.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/919 (47%), Positives = 565/919 (61%), Gaps = 65/919 (7%)

Query: 18  FLILFSLSSYLGSTIKHCLADANVEVLCLDAEREGLLAFKESLTDPSGRLSSWVGQDCCK 77
           FLI+ S       TIK      + +  C+D E+  LL FK+ LTD S RLSSWVG+DCCK
Sbjct: 12  FLIITSSGFLFHDTIKVGSCQGDHQRGCVDTEKVALLKFKQGLTDTSDRLSSWVGEDCCK 71

Query: 78  WNGVYCNNQSGHVTQLNLRNPYQLINGGVGDSTAYKGSCLGGKINPSLLHLKYLDTLDLS 137
           W GV CNN+S HV +L LR  Y   +G  G+        LGGKI+P+LL LKYL+ LDLS
Sbjct: 72  WRGVVCNNRSRHVIKLTLR--YLDADGTEGE--------LGGKISPALLELKYLNYLDLS 121

Query: 138 LNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDL--YADSFSSNSG 195
           +N+F G  IP++ G L+ LRYLNLS +SF G IPPQLG+LSSL YLDL  Y D  + N  
Sbjct: 122 MNNFGGTPIPKFIGSLEKLRYLNLSGASFGGPIPPQLGNLSSLHYLDLKEYFDESNQN-- 179

Query: 196 SLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPL 255
                  +L+W+SGL+SL+ LNLG V L    A WLQAV+ LPSL EL L  C L  +P 
Sbjct: 180 -------DLHWISGLTSLRHLNLGGVDLSQAAAYWLQAVSKLPSLSELHLPACALADLPP 232

Query: 256 SLPFINF-TSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLE 314
           SLPF N  TS+S++DLS N FNS IP WLF + +L  L L  N   G I + FAN   +E
Sbjct: 233 SLPFSNLITSLSIIDLSNNGFNSTIPHWLFQMRNLVYLDLSSNNLRGSILDAFANGTSIE 292

Query: 315 VLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNN-LEYLDLSS 373
            L             +  G L  LK+L LS N+LNGE+ E  D  SG  ++ LE LDL  
Sbjct: 293 RL-------------RNMGSLCNLKTLILSQNDLNGEITELIDVLSGCNSSWLETLDLGF 339

Query: 374 NSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFG 433
           N L G LP SLG L NL+ L L  NSF GSIPSSIGNLS L +L LS N MNGTIPE+ G
Sbjct: 340 NDLGGFLPNSLGKLHNLKSLWLWDNSFVGSIPSSIGNLSYLEELYLSDNSMNGTIPETLG 399

Query: 434 KLSELVDANLLQNSWEGILQESQFMNLKRLESF-RLTTEPTKKFVFNVSYNWVPPFRLKS 492
           +LS+LV   L +N   G++ E+ F NL  L+ F      P    VFN++  W+PPF+L  
Sbjct: 400 RLSKLVAIELSENPLTGVVTEAHFSNLTSLKEFSNYRGTPRVSLVFNINPEWIPPFKLSL 459

Query: 493 IQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKG 552
           ++I +CQ+GP FP WL+ QTELT V+L N GISD+IP  WF KL   +  L + +N + G
Sbjct: 460 LRIRSCQLGPKFPAWLRNQTELTDVVLNNAGISDSIP-KWFWKLDLHLDELDIGSNNLGG 518

Query: 553 KLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRL 612
           ++P  M      ++DLS N+F+G LPLWS+N  +L+L DN FS  +P   G  M  +  L
Sbjct: 519 RVPNSMKFLPESTVDLSENNFQGPLPLWSSNVTKLYLNDNFFSSHIPLEYGERMSMVTDL 578

Query: 613 YLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIP 672
            LS N L+G IP S   L +L  L I +N  SG  P  W      + ID+ NN+L+G +P
Sbjct: 579 DLSNNDLNGTIPLSFGKLNNLLTLVISNNHFSGGIPEFWNGVPTLYAIDMDNNNLSGELP 638

Query: 673 SSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFM 732
           SS GSLR L  L++SNN+LSG +P +LQNC+G+ ++DLGGN+ SG++P WI E + +  +
Sbjct: 639 SSMGSLRFLGFLMISNNHLSGQLPSALQNCSGIHTLDLGGNRFSGNVPAWIGERMPNLLI 698

Query: 733 LRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIW 792
           LRLRSNL  G  P +LC L  LHI+DL  NN  G IP C+GNLS +    +S+ ++  + 
Sbjct: 699 LRLRSNLFHGSFPSQLCTLSALHILDLGENNLLGFIPSCVGNLSGMASEIDSQRYEGELM 758

Query: 793 RVVKGRNPEYSNIIADVNSIDLSWNN------------------------LTGQIPDEIG 828
            + KGR   Y++I+  VNS+DLS NN                        LTG+IPD IG
Sbjct: 759 VLRKGREDLYNSILYLVNSMDLSHNNLSGEVPEGVTNLTRLGTLNLSVNHLTGKIPDNIG 818

Query: 829 NLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPS---LPNFNDPSIYEG 885
           +L  L  L+LS NQLSG IP  ++SL SL+ LNLS+NNL+G+IP+   L   +DPSIYE 
Sbjct: 819 SLQGLETLDLSRNQLSGVIPSGMASLTSLNHLNLSYNNLSGRIPTGNQLQTLDDPSIYEN 878

Query: 886 NPLLCGAPLPTKCPGKHSP 904
           NP LCG P   KCPG   P
Sbjct: 879 NPALCGPPTTAKCPGDEEP 897

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496717|ref|XP_003635312.1| PREDICTED: brassinosteroid LRR receptor kinase-like [Vitis vinifera]

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/925 (48%), Positives = 585/925 (63%), Gaps = 48/925 (5%)

Query: 14  SICTFLILFSLSSYLG-STIKHCLADANVEVLCLDAEREGLLAFKESLTDPSGRLSSWVG 72
           SI   L++F  S++L   T+K    +  + V C + ER+ L+ FK+ LTDPSGRLSSWVG
Sbjct: 7   SIHFLLLIFLSSTFLYLETVKLGSCNGVLNVTCTEIERKALVDFKQGLTDPSGRLSSWVG 66

Query: 73  QDCCKWNGVYCNNQSGHVTQLNLRNPY-QLINGGVGDSTAYK-----GSCLGGKINPSLL 126
            DCC+W+GV C+ +   V +L LRN Y +  +    D+ A++         GG+I+ SLL
Sbjct: 67  LDCCRWSGVVCSQRVPRVIKLKLRNQYARSPDANDEDTGAFEDDYGAAHAFGGEISHSLL 126

Query: 127 HLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLY 186
            LK L  LDLS+N+ EG +IP++ G  K LRYLNLS +SF G IPP LG+LSSL YLDL 
Sbjct: 127 DLKDLRYLDLSMNNLEGLQIPKFIGSFKRLRYLNLSGASFGGTIPPHLGNLSSLLYLDL- 185

Query: 187 ADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLH 246
                 NS SL     +L+WLSGLSSL+ LNLG + L    A W +AVN L SL+ELRL 
Sbjct: 186 ------NSYSLESVEDDLHWLSGLSSLRHLNLGNIDLSKAAAYWHRAVNSLSSLLELRLP 239

Query: 247 YCQLQGIP-LSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPN 305
            C L  +P L LPF N TS+ VLDLS N FNS+IP WLF+ +SL  L L  N   G +P 
Sbjct: 240 RCGLSSLPDLPLPFFNVTSLLVLDLSNNDFNSSIPHWLFNFSSLAYLDLNSNNLQGSVPE 299

Query: 306 EFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNN 365
            F  L  L+ +D S+NL +G  LP+  G L  L++L LS N+++GE+ EF DG S   N+
Sbjct: 300 GFGYLISLKYIDFSSNLFIG-HLPRDLGKLCNLRTLKLSFNSISGEITEFMDGLSECVNS 358

Query: 366 --LEYLDLSSN-SLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYN 422
             LE LDL  N  L G LP SLG+LKNL+ L L  NSF GSIP+SIGNLSSL+   +S N
Sbjct: 359 SSLESLDLGFNYKLGGFLPNSLGHLKNLKSLHLWSNSFVGSIPNSIGNLSSLQGFYISEN 418

Query: 423 GMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTK-KFVFNVS 481
            MNG IPES G+LS LV  +L +N W G++ ES F NL  L    +         VFNV+
Sbjct: 419 QMNGIIPESVGQLSALVALDLSENPWVGVVTESHFSNLTSLTELAIKKSFLNITLVFNVN 478

Query: 482 YNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEIT 541
             W+PPF+L  ++++ CQ+GP FP WL+ Q +L +++L N  ISDTIP DWF KL  ++ 
Sbjct: 479 SKWIPPFKLNYLELQACQLGPKFPAWLRTQNQLKTIVLNNARISDTIP-DWFWKLDLQLE 537

Query: 542 YLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPEN 601
            L ++NNQ+ G++P  +  P    +DL SN F G  P +S+N   L+L+DN FSGP+P +
Sbjct: 538 LLDVANNQLSGRVPNSLKFPKNAVVDLGSNRFHGPFPHFSSNLSSLYLRDNLFSGPIPRD 597

Query: 602 IGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGID 661
           +G  MP L    +SWN L+G IP S+  +  L  L + +N LSGE P  W      + +D
Sbjct: 598 VGKTMPWLTNFDVSWNSLNGTIPLSLGKITGLTSLVLSNNHLSGEIPLIWNDKPDLYIVD 657

Query: 662 ISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPL 721
           ++NNSL+G IPSS G+L SL  L+LS N LSG IP SLQNC  + S DLG N+LSG+LP 
Sbjct: 658 MANNSLSGEIPSSMGTLNSLMFLILSGNKLSGEIPSSLQNCKDMDSFDLGDNRLSGNLPS 717

Query: 722 WISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYG 781
           WI E + S  +LRLRSNL  G+IP ++C+L +LHI+D++HNN SG++P C+GNLS +   
Sbjct: 718 WIGE-MQSLLILRLRSNLFDGNIPSQVCSLSHLHILDVAHNNLSGSVPSCLGNLSGMATE 776

Query: 782 NNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNN----------------------- 818
            +SE ++  +  V+KGR   Y N +  VNSIDLS NN                       
Sbjct: 777 ISSERYEGQLSVVMKGRELIYQNTLYLVNSIDLSDNNISGKLPELRNLSRLGTLNLSRNH 836

Query: 819 LTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPS---LP 875
           LTG IP+++G+LS L  L+LS NQLSG IP S+ S+ SL+ LNLS+N L+GKIP+     
Sbjct: 837 LTGNIPEDVGSLSQLETLDLSRNQLSGLIPPSMVSMTSLNHLNLSYNRLSGKIPTSNQFQ 896

Query: 876 NFNDPSIYEGNPLLCGAPLPTKCPG 900
            FNDPSIY  N  LCG PL  KCPG
Sbjct: 897 TFNDPSIYRNNLALCGEPLAMKCPG 921

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	906
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.899	0.900	0.523	2e-223
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.896	0.796	0.272	2.3e-72
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.954	0.870	0.284	7.1e-70
TAIR|locus:2005629	1140	AT1G75640 [Arabidopsis thalian	0.687	0.546	0.321	9.8e-68
UNIPROTKB|Q8RZV7	1294	P0413C03.22 "Putative extra sp	0.743	0.520	0.315	2.2e-67
TAIR|locus:2182870	1192	EMS1 "EXCESS MICROSPOROCYTES1"	0.692	0.526	0.317	4.6e-64
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.646	0.691	0.316	6e-64
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.826	0.599	0.304	3.7e-62
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.822	0.595	0.297	3.7e-62
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.643	0.718	0.307	1.5e-60

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 2157 (764.4 bits), Expect = 2.0e-223, P = 2.0e-223
 Identities = 435/831 (52%), Positives = 554/831 (66%)

Query:    45 CLDAEREGLLAFKESLTDPSGRLSSWVGQDCCKWNGVYCNNQSGHVTQLNLRNPYQLING 104
             C+  ER+ LL F+ +LTD S RL SW G DCC W GV C+ ++ HV +++LRNP Q +  
Sbjct:    33 CISTERQALLTFRAALTDLSSRLFSWSGPDCCNWPGVLCDARTSHVVKIDLRNPSQDVR- 91

Query:   105 GVGDSTAYKGSCLGGKINPXXXXXXXXXXXXXXXNDFEGAEIPEYFGQLKNLRYLNLSFS 164
                 S  YK   L GKI+P               NDF   EIPE+ GQ+ +LRYLNLS S
Sbjct:    92 ----SDEYKRGSLRGKIHPSLTQLKFLSYLDLSSNDFNELEIPEFIGQIVSLRYLNLSSS 147

Query:   165 SFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQXXX-XXXXXXXXXXXXXGFVKL 223
             SFSGEIP  LG+LS L+ LDLYA+SF  +SG+L+L A                  G+V L
Sbjct:   148 SFSGEIPTSLGNLSKLESLDLYAESFG-DSGTLSLRASNLRWLSSLSSSLKYLNMGYVNL 206

Query:   224 DHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPF-INFTSISVLDLSENSFNSAIPPW 282
                G  WLQ  + + +L EL L   +L+ +P +L    +   + VLDLSENS NS IP W
Sbjct:   207 SGAGETWLQDFSRISALKELHLFNSELKNLPPTLSSSADLKLLEVLDLSENSLNSPIPNW 266

Query:   283 LFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLD 342
             LF LT+L KL+LRW+F  G IP  F NLKLLE LDLSNNL L G++P + G L +LK LD
Sbjct:   267 LFGLTNLRKLFLRWDFLQGSIPTGFKNLKLLETLDLSNNLALQGEIPSVLGDLPQLKFLD 326

Query:   343 LSANNLNGEVHEFFDGFS-GRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFW 401
             LSAN LNG++H F D FS  + N+L +LDLSSN L G LP+SLG+L+NLQ L LS NSF 
Sbjct:   327 LSANELNGQIHGFLDAFSRNKGNSLVFLDLSSNKLAGTLPESLGSLRNLQTLDLSSNSFT 386

Query:   402 GSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLK 461
             GS+PSSIGN++SL+KLDLS N MNGTI ES G+L+ELVD NL+ N+W G+LQ+S F+NL+
Sbjct:   387 GSVPSSIGNMASLKKLDLSNNAMNGTIAESLGQLAELVDLNLMANTWGGVLQKSHFVNLR 446

Query:   462 RLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRN 521
              L+S RLTTEP +  VF +   W+PPFRL+ IQIENC++G  FP+WLQVQT+L  V LRN
Sbjct:   447 SLKSIRLTTEPYRSLVFKLPSTWIPPFRLELIQIENCRIG-LFPMWLQVQTKLNFVTLRN 505

Query:   522 VGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWS 581
              GI DTIP  WFS +SS++TYLIL+NN+IKG+LP+++  P L +IDLSSN+FEGT PLWS
Sbjct:   506 TGIEDTIPDSWFSGISSKVTYLILANNRIKGRLPQKLAFPKLNTIDLSSNNFEGTFPLWS 565

Query:   582 TNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSN 641
             TNA EL L +N FSG LP+NI  LMPR++++YL  N  +G IPSS+C +  LQILS+R N
Sbjct:   566 TNATELRLYENNFSGSLPQNIDVLMPRMEKIYLFSNSFTGNIPSSLCEVSGLQILSLRKN 625

Query:   642 KLSGEFPNCWYHSQMFWGIDISNNSLTGSIPXXXXXXXXXXXXXXXXXXXXXXIPCSLQN 701
               SG FP CW+   M WGID+S N+L+G IP                      IP SL+N
Sbjct:   626 HFSGSFPKCWHRQFMLWGIDVSENNLSGEIPESLGMLPSLSVLLLNQNSLEGKIPESLRN 685

Query:   702 CTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSH 761
             C+GLT+IDLGGN+L+G LP W+ + LSS FMLRL+SN  +G IP  LCN+ NL I+DLS 
Sbjct:   686 CSGLTNIDLGGNKLTGKLPSWVGK-LSSLFMLRLQSNSFTGQIPDDLCNVPNLRILDLSG 744

Query:   762 NNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTG 821
             N  SG IP+CI NL+A+  G N+EVFQ L++ V + R  EY  I    NSI+LS NN++G
Sbjct:   745 NKISGPIPKCISNLTAIARGTNNEVFQNLVFIVTRAR--EYEAI---ANSINLSGNNISG 799

Query:   822 QIPDEIGNLSALHILNLSHNQLSGAIPQXXXXXXXXXXXXXXXXXXAGKIP 872
             +IP EI  L  L ILNLS N ++G+IP+                  +G IP
Sbjct:   800 EIPREILGLLYLRILNLSRNSMAGSIPEKISELSRLETLDLSKNKFSGAIP 850

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 631 (227.2 bits), Expect = 2.3e-72, Sum P(2) = 2.3e-72
 Identities = 244/894 (27%), Positives = 389/894 (43%)

Query:    13 KSICTFLILFSLSSYLGSTIKHCLADANVEVLCLDAEREGLLAFKESLTDPSGRLSSWVG 72
             +SIC FLIL  + S+L + +      +  + LC   +++ LL FK        +  SWV 
Sbjct:    51 RSIC-FLIL--IPSFLITFV------SATQHLCHSDQKDALLDFKNEFGMVDSK--SWVN 99

Query:    73 Q-DCCKWNGVYCNNQSGHVTQLNLRNPYQLINGGVGDSTAYKGSCLGGKINPXXXXXXXX 131
             + DCC W+G+ C+ +SG+V  L+L + +  + G +             K N         
Sbjct:   100 KSDCCSWDGITCDAKSGNVIGLDLSSIF--LYGQL-------------KSNSSLFKLRHL 144

Query:   132 XXXXXXXNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFS 191
                    N+F  + IP  F +L  L  L+LS SS SG+IP  L  L+ L  LDL +  F 
Sbjct:   145 RDLNLANNNFNNSPIPAEFDKLTGLERLDLSQSSLSGQIPINLLQLTKLVSLDLSSSDFF 204

Query:   192 SNSGSLALHAQXXXXXXXXXXXXXXXXGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQ 251
              +     L                     +    + ++  +  + + SL  L L+ C L 
Sbjct:   205 GDESFHYLSIDKSFLPLLARNLRNLRELDMSYVKISSEIPEEFSNIRSLRSLNLNGCNLF 264

Query:   252 G-IPLSLPFI-NFTSI-------------------SVLDLS--ENSFNSAIPPWLFSLTS 288
             G  P S+  I N  SI                   S+L L+    SF+ AIP  + SL +
Sbjct:   265 GEFPSSILLIPNLQSIDLGNNPNLRGNLPVFHENNSLLKLTILYTSFSGAIPDSISSLKN 324

Query:   289 LTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNL 348
             LT L L  ++F+G IP    NL  L  L LS+N +L G++P   G L +L +  +  N L
Sbjct:   325 LTSLTLSVSYFSGKIPFSLGNLSHLSHLSLSSN-NLIGEIPSSIGNLNQLTNFYVGGNKL 383

Query:   349 NGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSI 408
             +G +       +     L  + LSSN   G LP S+  L  L++     N F G+I S +
Sbjct:   384 SGNLPATLSNLT----KLNTISLSSNQFTGSLPPSISQLSKLKFFFADDNPFIGAILSPL 439

Query:   409 GNLSSLRKLDLSYNGMNGTIP-ESFGKLSELVDANLLQNSWEGI--LQESQFMNLKRLES 465
               + SL ++ LSYN +N  +  E+   L  L    +   ++  +  L  + F +LK+L +
Sbjct:   440 LKIPSLTRIHLSYNQLNDLVGIENIFMLPNLETFYIYHYNYTKVRPLDLNVFSSLKQLGT 499

Query:   466 FRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGIS 525
               ++  P      N++ ++  P  L+ + + +C +   FP +++    L  + L N  I 
Sbjct:   500 LYISRIPIS--TTNITSDF--PSNLEYLSLRSCNI-TDFPEFIRKGRNLQILDLSNNKIK 554

Query:   526 DTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPN--LRSIDLSSNHFEGTLPLWSTN 583
               +P DW  ++ + +  + LSNN + G       SP   L S+DLSSN F+G L L S +
Sbjct:   555 GQVP-DWLWRMPT-LNSVDLSNNSLSGFHVSVKASPESQLTSVDLSSNAFQGPLFLPSKS 612

Query:   584 ADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNL-EDLQILSIRSNK 642
                    +N F+G +P +I  L   L+ L LS N L+G +P  +  L   L  L +R+N 
Sbjct:   613 LRYFSGSNNNFTGKIPRSICGLSS-LEILDLSNNNLNGSLPWCLETLMSSLSDLDLRNNS 671

Query:   643 LSGEFPNCWYHSQMFWGIDISNNSLTGSIPXXXXXXXXXXXXXXXXXXXXXXIPCSLQNC 702
             LSG  P  + ++     +D+S+N + G +P                       P  L + 
Sbjct:   672 LSGSLPEIFMNATKLRSLDVSHNRMEGKLPGSLTGCSSLEVLNVGSNRINDMFPFELNSL 731

Query:   703 TGLTSIDLGGNQLSGSLP----LWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIID 758
               L  + L  N+  G+L     +W         ++ +  N   G +P       N   + 
Sbjct:   732 QKLQVLVLHSNKFHGTLHNVDGVWFG--FPQLQIIDVSHNDFFGILPSDY--FMNWTAMS 787

Query:   759 LSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNN 818
                +N     P  I N S  VYG++   +  L+  + KG + E   ++    +IDLS N 
Sbjct:   788 SKKDN--NIEPEYIQNPS--VYGSSLGYYTSLVL-MSKGVSMEMERVLTIYTAIDLSGNQ 842

Query:   819 LTGQIPDEIGNLSALHILNLSHNQLSGAIPQXXXXXXXXXXXXXXXXXXAGKIP 872
             L G+IPD IG L  L ILN+S N  +G IP                   +G+IP
Sbjct:   843 LHGKIPDSIGLLKELRILNMSSNGFTGHIPSSLANLKNLESLDISQNNISGEIP 896

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 708 (254.3 bits), Expect = 7.1e-70, P = 7.1e-70
 Identities = 273/961 (28%), Positives = 426/961 (44%)

Query:     5 TGFSSDHFKSICTFLILFSLSSYLGS----TIKHCLADANVEVLCLDAERE-----GLLA 55
             TG  S     + T ++LFS SS+  +    T   C  D    +L    E +     G L 
Sbjct:     2 TGLYSSMSFFLRTIVLLFSTSSFCNTFASLTQDSCHPDQRDALLEFKNEFKIWYPNGFLD 61

Query:    56 FKESLTDPSG--RLSSWV-GQDCCKWNGVYCNNQSGHVTQLNLRNPYQLINGGVG-DSTA 111
                 L D +   +  SW    DCC W+G+ C+ +SG VT L+L      ++G +  +S+ 
Sbjct:    62 IDGVLMDVTSYPKTKSWTKNSDCCYWDGITCDTKSGKVTGLDLS--CSCLHGRLEPNSSL 119

Query:   112 YKGSCLGGKINPXXXXXXXXXXXXXXXNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIP 171
             ++   L   +N                N+F  + IP  F +   L  LNLS SSFSG I 
Sbjct:   120 FRLQHLQS-VN-------------LAYNNFTNSPIPAEFSKFMRLERLNLSRSSFSGHIS 165

Query:   172 PQLGSLSSLQYLDL-----YADSFSSNSGSLALHA---------QXXXXXXXXXXXXXXX 217
              +L  L++L  LDL     Y+ S  S    L LH          +               
Sbjct:   166 IKLLQLTNLVSLDLSSSFPYSPSSLSIEKPLFLHLLALNFMNLRELDMSSVDISSAIPIE 225

Query:   218 XGFV----KLDHVGADWL----QAVNMLPSLVELRL-HYCQLQGIPLSLP-FINFTSISV 267
               ++     L   G + L     +V ++P+L  + L H   L+G   SLP F+   S+  
Sbjct:   226 FSYMWSLRSLTLKGCNLLGRFPNSVLLIPNLESISLDHNLNLEG---SLPNFLRNNSLLK 282

Query:   268 LDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQ 327
             L +   SF+  IP  + +L  LT L L+ + F+G IP+   +L  L  L LS N +  G+
Sbjct:   283 LSIYNTSFSGTIPNSISNLKHLTSLKLQQSAFSGRIPSSLRSLSHLSNLVLSEN-NFVGE 341

Query:   328 LPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNL 387
             +P     L++L   D+S NNLNG     F       N L Y+D+ SN   G LP ++  L
Sbjct:   342 IPSSVSNLKQLTLFDVSDNNLNGN----FPSSLLNLNQLRYIDICSNHFTGFLPPTISQL 397

Query:   388 KNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIP-ESFGKLSELVDANLLQN 446
              NL++     NSF GSIPSS+ N+SSL  L LSYN +N T   ++   L  L    L  N
Sbjct:   398 SNLEFFSACDNSFTGSIPSSLFNISSLTTLGLSYNQLNDTTNIKNISLLHNLQRLLLDNN 457

Query:   447 SWEGILQESQ-FMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFP 505
             +++    +   F++LKRL S  L+  P      N++ +      L+ +++  C +   FP
Sbjct:   458 NFKASQVDLDVFLSLKRLVSLALSGIPLS--TTNITSDSEFSSHLEYLELSGCNI-IEFP 514

Query:   506 VWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQI---KGKLPRQMNSPN 562
              +++ Q  L+S+ L N  I   +P +W  +L  E++ + LSNN +    G L + ++   
Sbjct:   515 EFIRNQRNLSSIDLSNNNIKGQVP-NWLWRLP-ELSTVDLSNNSLIGFNGSL-KALSGSK 571

Query:   563 LRSIDLSSNHFEGTLPLWSTNADELFLQD-NRFSGPLPENIGSLMPRLQRLYLSWNQLSG 621
             +  +DLSSN F+G L        + FL   N F+G +P +I  L   L  L LS N L G
Sbjct:   572 IVMLDLSSNAFQGPL-FMPPRGIQYFLGSYNNFTGYIPPSICGLANPLI-LDLSNNNLHG 629

Query:   622 RIPSSV-CNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPXXXXXXXX 680
              IP  +   +  L +L++R+N L G  PN + ++++   +D+S+N+L G +P        
Sbjct:   630 LIPRCLEAQMSSLSVLNLRNNSLDGSLPNIFMNAKVLSSLDVSHNTLEGKLPASLAGCSA 689

Query:   681 XXXXXXXXXXXXXXIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRS--- 737
                            P  L +   L  + L  N   G+L   +      F +LR+     
Sbjct:   690 LEILNVESNNINDTFPFWLNSLPKLQVLVLRSNNFRGTLHN-VDGVWFGFPLLRITDVSH 748

Query:   738 NLLSGDIPQRLCNLQNLHIIDLSHNNFSG-AIPRCIGNLSALVYGNN--SEVFQQLIWRV 794
             N   G +P       N   I  S         P   G  ++LV  N   S   Q+++ + 
Sbjct:   749 NDFVGTLPSDY--FMNWTAISKSETELQYIGDPEDYGYYTSLVLMNKGVSMEMQRILTKY 806

Query:   795 ---------VKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSG 845
                      ++G+ PE   I+ +++ ++LS N  TG IP  + NL+ L  L++S N++ G
Sbjct:   807 TVIDFAGNKIQGKIPESVGILKELHVLNLSSNAFTGHIPSSLANLTNLESLDISQNKIGG 866

Query:   846 AIPQXXXXXXXXXXXXXXXXXXAGKIPSLPNFN--DPSIYEGNPLLCGAPLPTKCPGKHS 903
              IP                    G IP    F+  + S YEGNP + G+ L   C   H+
Sbjct:   867 EIPPELGTLSSLEWINVSHNQLVGSIPQGTQFHRQNCSSYEGNPGIYGSSLKDVCGDIHA 926

Query:   904 P 904
             P
Sbjct:   927 P 927

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2005629 AT1G75640 [Arabidopsis thaliana (taxid:3702)]

 Score = 695 (249.7 bits), Expect = 9.8e-68, P = 9.8e-68
 Identities = 211/656 (32%), Positives = 317/656 (48%)

Query:   229 DWLQAVNMLPSLV-ELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLT 287
             DW   V+     V ELRL    L G  LS      T +  L L  N  N A+P  L    
Sbjct:    59 DW-HGVSCFSGRVRELRLPRLHLTG-HLSPRLGELTQLRKLSLHTNDINGAVPSSLSRCV 116

Query:   288 SLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANN 347
              L  LYL +N F+G  P E  NL+ L+VL+ ++N  L G L  +  + + L+ +DLS+N 
Sbjct:   117 FLRALYLHYNSFSGDFPPEILNLRNLQVLNAAHN-SLTGNLSDVT-VSKSLRYVDLSSNA 174

Query:   348 LNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSS 407
             ++G++   F   S    +L+ ++LS N   GE+P +LG L++L+YL L  N   G+IPS+
Sbjct:   175 ISGKIPANFSADS----SLQLINLSFNHFSGEIPATLGQLQDLEYLWLDSNQLQGTIPSA 230

Query:   408 IGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLES-F 466
             + N SSL    ++ N + G IP + G +  L   +L +NS+ G +  S         S  
Sbjct:   231 LANCSSLIHFSVTGNHLTGLIPVTLGTIRSLQVISLSENSFTGTVPVSLLCGYSGYNSSM 290

Query:   467 RLTTEPTKKFVFNVSYN---WVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVG 523
             R+       F      +    V P  L+ + I   ++   FP WL   T+LTS+++ ++ 
Sbjct:   291 RIIQLGVNNFTGIAKPSNAACVNP-NLEILDIHENRINGDFPAWL---TDLTSLVVLDIS 346

Query:   524 ISDTIPGDWFSKLSS--EITYLILSNNQIKGKLPRQM-NSPNLRSIDLSSNHFEGTLPLW 580
               +   G   +K+ +   +  L ++NN + G++P  + N  +LR +D   N F G +P +
Sbjct:   347 -GNGFSGGVTAKVGNLMALQELRVANNSLVGEIPTSIRNCKSLRVVDFEGNKFSGQIPGF 405

Query:   581 STNADELF---LQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILS 637
              +    L    L  N FSG +P ++ SL   L+ L L+ N L+G IPS +  L +L IL+
Sbjct:   406 LSQLRSLTTISLGRNGFSGRIPSDLLSLYG-LETLNLNENHLTGAIPSEITKLANLTILN 464

Query:   638 IRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPXXXXXXXXXXXXXXXXXXXXXXIPC 697
             +  N+ SGE P+     +    ++IS   LTG IP                      +P 
Sbjct:   465 LSFNRFSGEVPSNVGDLKSLSVLNISGCGLTGRIPVSISGLMKLQVLDISKQRISGQLPV 524

Query:   698 SLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHII 757
              L     L  + LG N L G +P   S +L S   L L SNL SG IP+    L++L ++
Sbjct:   525 ELFGLPDLQVVALGNNLLGGVVPEGFS-SLVSLKYLNLSSNLFSGHIPKNYGFLKSLQVL 583

Query:   758 DLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWN 817
              LSHN  SG IP  IGN S+L      EV + L    +KG  P Y + ++ +  +DLS N
Sbjct:   584 SLSHNRISGTIPPEIGNCSSL------EVLE-LGSNSLKGHIPVYVSKLSLLKKLDLSHN 636

Query:   818 NLTGQIPDEIGNLSALHILNLSHNQLSGAIPQXXXXXXXXXXXXXXXXXXAGKIPS 873
             +LTG IPD+I   S+L  L L+ N LSG IP+                     IPS
Sbjct:   637 SLTGSIPDQISKDSSLESLLLNSNSLSGRIPESLSRLTNLTALDLSSNRLNSTIPS 692

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

UNIPROTKB|Q8RZV7 P0413C03.22 "Putative extra sporogenous cells" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 694 (249.4 bits), Expect = 2.2e-67, P = 2.2e-67
 Identities = 233/739 (31%), Positives = 346/739 (46%)

Query:   144 AEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQX 203
             A  P   G  ++L  LN S   FSGE+P  LG+L +LQYLDL   S +  +G + +    
Sbjct:    79 APFPLCIGAFQSLVRLNFSGCGFSGELPEALGNLQNLQYLDL---SNNELTGPIPISLYN 135

Query:   204 XXXXXXXXXXXXXXXG-----FVKLDHVG--ADWLQAVN-MLP----SLVELRLHYCQLQ 251
                            G       +L H+   +  + +++  LP    SL  L L   ++ 
Sbjct:   136 LKMLKEMVLDYNSLSGQLSPAIAQLQHLTKLSISMNSISGSLPPDLGSLKNLELLDIKMN 195

Query:   252 GIPLSLP--FINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFAN 309
                 S+P  F N + +   D S+N+   +I P + SLT+L  L L  N F G IP E   
Sbjct:   196 TFNGSIPATFGNLSCLLHFDASQNNLTGSIFPGITSLTNLLTLDLSSNSFEGTIPREIGQ 255

Query:   310 LKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYL 369
             L+ LE+L L  N DL G++P+  G L++LK L L      G++     G S    +L  L
Sbjct:   256 LENLELLILGKN-DLTGRIPQEIGSLKQLKLLHLEECQFTGKIPWSISGLS----SLTEL 310

Query:   370 DLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIP 429
             D+S N+ + ELP S+G L NL  L        G++P  +GN   L  ++LS+N + G IP
Sbjct:   311 DISDNNFDAELPSSMGELGNLTQLIAKNAGLSGNMPKELGNCKKLTVINLSFNALIGPIP 370

Query:   430 ESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFR 489
             E F  L  +V   +  N   G + +      K   S RL         F+     +P   
Sbjct:   371 EEFADLEAIVSFFVEGNKLSGRVPD-WIQKWKNARSIRLGQNK-----FSGPLPVLPLQH 424

Query:   490 LKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQ 549
             L S   E+  +  S P  +     L S++L +  ++ TI  D   K  + +T L L +N 
Sbjct:   425 LLSFAAESNLLSGSIPSHICQANSLHSLLLHHNNLTGTI--DEAFKGCTNLTELNLLDNH 482

Query:   550 IKGKLPRQMNSPNLRSIDLSSNHFEGTLP--LW-STNADELFLQDNRFSGPLPENIGSLM 606
             I G++P  +    L +++LS N F G LP  LW S    E+ L +N  +GP+PE+IG L 
Sbjct:   483 IHGEVPGYLAELPLVTLELSQNKFAGMLPAELWESKTLLEISLSNNEITGPIPESIGKLS 542

Query:   607 PRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNS 666
               LQRL++  N L G IP SV +L +L  LS+R N+LSG  P   ++ +    +D+S N+
Sbjct:   543 V-LQRLHIDNNLLEGPIPQSVGDLRNLTNLSLRGNRLSGIIPLALFNCRKLATLDLSYNN 601

Query:   667 LTGSIPXXXXXXXXXXXXXXXXXXXXXXIPCSLQNCTGLTS--------------IDLGG 712
             LTG+IP                      IP  +  C G  +              +DL  
Sbjct:   602 LTGNIPSAISHLTLLDSLILSSNQLSGSIPAEI--CVGFENEAHPDSEFLQHHGLLDLSY 659

Query:   713 NQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCI 772
             NQL+G +P  I +N +   +L L+ NLL+G IP  L  L NL  I+LS N F G +    
Sbjct:   660 NQLTGQIPTSI-KNCAMVMVLNLQGNLLNGTIPVELGELTNLTSINLSFNEFVGPMLPWS 718

Query:   773 G---NLSALVYGNNSEVFQQLIWRVVKGRNP-EYSNIIADVNSIDLSWNNLTGQIPDEIG 828
             G    L  L+  NN           + G  P +   I+  +  +DLS N LTG +P  + 
Sbjct:   719 GPLVQLQGLILSNNH----------LDGSIPAKIGQILPKIAVLDLSSNALTGTLPQSLL 768

Query:   829 NLSALHILNLSHNQLSGAI 847
               + L+ L++S+N LSG I
Sbjct:   769 CNNYLNHLDVSNNHLSGHI 787

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0009554 "megasporogenesis" evidence=IMP

GO:0009556 "microsporogenesis" evidence=IMP

GO:0048658 "tapetal layer development" evidence=IMP

TAIR|locus:2182870 EMS1 "EXCESS MICROSPOROCYTES1" [Arabidopsis thaliana (taxid:3702)]

 Score = 662 (238.1 bits), Expect = 4.6e-64, P = 4.6e-64
 Identities = 213/670 (31%), Positives = 317/670 (47%)

Query:   229 DWLQAVNMLPSLVELRLHYCQLQG-IPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLT 287
             DW+    +L  +  L L    L+G IP  +  +   ++  L L+ N F+  IPP +++L 
Sbjct:    56 DWVGVTCLLGRVNSLSLPSLSLRGQIPKEISSLK--NLRELCLAGNQFSGKIPPEIWNLK 113

Query:   288 SLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGI-LRRLKSLDLSAN 346
              L  L L  N  TG +P   + L  L  LDLS+N    G LP  F I L  L SLD+S N
Sbjct:   114 HLQTLDLSGNSLTGLLPRLLSELPQLLYLDLSDN-HFSGSLPPSFFISLPALSSLDVSNN 172

Query:   347 NLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPS 406
             +L+GE+        G+ +NL  L +  NS  G++P  +GN+  L+        F G +P 
Sbjct:   173 SLSGEIPPEI----GKLSNLSNLYMGLNSFSGQIPSEIGNISLLKNFAAPSCFFNGPLPK 228

Query:   407 SIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESF 466
              I  L  L KLDLSYN +  +IP+SFG+L  L   NL+     G++   +  N K L+S 
Sbjct:   229 EISKLKHLAKLDLSYNPLKCSIPKSFGELHNLSILNLVSAELIGLIPP-ELGNCKSLKSL 287

Query:   467 RLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISD 526
              L+          +  + +P   L +   E  Q+  S P W+     L S++L N   S 
Sbjct:   288 MLSFNSLSG-PLPLELSEIP---LLTFSAERNQLSGSLPSWMGKWKVLDSLLLANNRFSG 343

Query:   527 TIPGDWFSKLSSEITYLILSNNQIKGKLPRQM-NSPNLRSIDLSSNHFEGTLP-LWS--T 582
              IP +   +    + +L L++N + G +PR++  S +L +IDLS N   GT+  ++   +
Sbjct:   344 EIPHE--IEDCPMLKHLSLASNLLSGSIPRELCGSGSLEAIDLSGNLLSGTIEEVFDGCS 401

Query:   583 NADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNK 642
             +  EL L +N+ +G +PE++  L P L  L L  N  +G IP S+    +L   +   N+
Sbjct:   402 SLGELLLTNNQINGSIPEDLWKL-P-LMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNR 459

Query:   643 LSGEFPNCWYHSQMFWGIDISNNSLTGSIPXXXXXXXXXXXXXXXXXXXXXXIPCSLQNC 702
             L G  P    ++     + +S+N LTG IP                      IP  L +C
Sbjct:   460 LEGYLPAEIGNAASLKRLVLSDNQLTGEIPREIGKLTSLSVLNLNANMFQGKIPVELGDC 519

Query:   703 TGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQR------------LCN 750
             T LT++DLG N L G +P  I+  L+    L L  N LSG IP +            L  
Sbjct:   520 TSLTTLDLGSNNLQGQIPDKITA-LAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSF 578

Query:   751 LQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVN 810
             LQ+  I DLS+N  SG IP  +G    LV     E+   L    + G  P   + + ++ 
Sbjct:   579 LQHHGIFDLSYNRLSGPIPEELGECLVLV-----EI--SLSNNHLSGEIPASLSRLTNLT 631

Query:   811 SIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQXXXXXXXXXXXXXXXXXXAGK 870
              +DLS N LTG IP E+GN   L  LNL++NQL+G IP+                   G 
Sbjct:   632 ILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGP 691

Query:   871 IP-SLPNFND 879
             +P SL N  +
Sbjct:   692 VPASLGNLKE 701

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009556 "microsporogenesis" evidence=IMP

GO:0010234 "tapetal cell fate specification" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
 Identities = 199/628 (31%), Positives = 296/628 (47%)

Query:   268 LDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQ 327
             LDL+  +    IP  L +L+ LT + L +N F G IP    NL  L  L L+NN+ L G+
Sbjct:   115 LDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNV-LTGE 173

Query:   328 LPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNL 387
             +P   G L RL +L+L +N L G++ +      G    L  L L+SN+L GE+P SLGNL
Sbjct:   174 IPSSLGNLSRLVNLELFSNRLVGKIPDSI----GDLKQLRNLSLASNNLIGEIPSSLGNL 229

Query:   388 KNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNS 447
              NL +L L+ N   G +P+SIGNL  LR +    N ++G IP SF  L++L    L  N+
Sbjct:   230 SNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPISFANLTKLSIFVLSSNN 289

Query:   448 WEGIL--QESQFMNLKRLE-SFRLTTEPTKKFVFNVSYNWVPPFRLKSIQI-ENCQVGPS 503
             +        S F NL+  + S+   + P  K     S   +P   L+SI + EN   GP 
Sbjct:   290 FTSTFPFDMSIFHNLEYFDVSYNSFSGPFPK-----SLLLIPS--LESIYLQENQFTGPI 342

Query:   504 FPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNS-PN 562
                     T+L  +IL    +   IP +  S+L + +  L +S+N   G +P  ++   N
Sbjct:   343 EFANTSSSTKLQDLILGRNRLHGPIP-ESISRLLN-LEELDISHNNFTGAIPPTISKLVN 400

Query:   563 LRSIDLSSNHFEGTLP--LWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLS 620
             L  +DLS N+ EG +P  LW  N   + L  N FS    EN       ++ L L+ N   
Sbjct:   401 LLHLDLSKNNLEGEVPACLWRLNT--MVLSHNSFSSF--ENTSQEEALIEELDLNSNSFQ 456

Query:   621 GRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYH-SQMFWGIDISNNSLTGSIPXXXXXXX 679
             G IP  +C L  L  L + +N  SG  P+C  + S     +++ +N+ +G++P       
Sbjct:   457 GPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKAT 516

Query:   680 XXXXXXXXXXXXXXXIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNL 739
                             P SL NC  L  +++  N++    P W+ E+L S  +L LRSN 
Sbjct:   517 ELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWL-ESLPSLHVLNLRSNK 575

Query:   740 LSGDIPQRLCNL--QNLHIIDLSHNNFSGAIPRC-IGNLSALV-YGNNSEVFQQLIWR-- 793
               G +  R  ++  Q+L IID+SHNNFSG +P     N   +       + +    WR  
Sbjct:   576 FYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTEFWRYA 635

Query:   794 ---------VVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLS 844
                      V KG +  +  I  D  +ID S N + G IP+ +G L  L +LNLS N  +
Sbjct:   636 DSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFT 695

Query:   845 GAIPQXXXXXXXXXXXXXXXXXXAGKIP 872
               IP+                  +G+IP
Sbjct:   696 SVIPRFLANLTKLETLDISRNKLSGQIP 723

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 645 (232.1 bits), Expect = 3.7e-62, P = 3.7e-62
 Identities = 248/815 (30%), Positives = 359/815 (44%)

Query:   114 GSCLGGKINPXXXXXXXXXXXXXXXNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQ 173
             G  L G I+P               N+  G  IP     L +L  L L  +  +GEIP Q
Sbjct:    80 GLGLTGSISPWFGRFDNLIHLDLSSNNLVGP-IPTALSNLTSLESLFLFSNQLTGEIPSQ 138

Query:   174 LGSLSSLQYLDLYADSFSSNSGSLALHAQXXXXXXXXXXXXXXXXGFVKLDHVGADWLQA 233
             LGSL +++ L +         G   L                      +L       L  
Sbjct:   139 LGSLVNIRSLRI---------GDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQLGR 189

Query:   234 VNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLY 293
             +  + SL+ L+ +Y  L+G P+     N + ++V   +EN  N  IP  L  L +L  L 
Sbjct:   190 LVRVQSLI-LQDNY--LEG-PIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILN 245

Query:   294 LRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVH 353
             L  N  TG IP++   +  L+ L L  N  L G +PK    L  L++LDLSANNL GE+ 
Sbjct:   246 LANNSLTGEIPSQLGEMSQLQYLSLMAN-QLQGLIPKSLADLGNLQTLDLSANNLTGEIP 304

Query:   354 EFFDGFSGRPNNLEYLDLSSNSLEGELPKSL-GNLKNLQYLRLSGNSFWGSIPSSIGNLS 412
             E F   S     L  L L++N L G LPKS+  N  NL+ L LSG    G IP  +    
Sbjct:   305 EEFWNMS----QLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQ 360

Query:   413 SLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQES--QFMNLKRLESF---- 466
             SL++LDLS N + G+IPE+  +L EL D  L  N+ EG L  S     NL+ L  +    
Sbjct:   361 SLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNL 420

Query:   467 --RLTTEPTKKFVFNVSYNWVPPFRLKSIQ-IENC-------QVGPSF----PVWLQVQT 512
               +L  E +      V + +   F  +  Q I NC         G  F    P  +    
Sbjct:   421 EGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLK 480

Query:   513 ELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNS-PNLRSIDLSSN 571
             EL  + LR   +   +P    +    ++  L L++NQ+ G +P        L  + L +N
Sbjct:   481 ELNLLHLRQNELVGGLPASLGN--CHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNN 538

Query:   572 HFEGTLP--LWST-NADELFLQDNRFSGPLPENIGSLMPRLQRLYLSW----NQLSGRIP 624
               +G LP  L S  N   + L  NR +G +    GS        YLS+    N     IP
Sbjct:   539 SLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSS------YLSFDVTNNGFEDEIP 592

Query:   625 SSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPXXXXXXXXXXXX 684
               + N ++L  L +  N+L+G+ P      +    +D+S+N+LTG+IP            
Sbjct:   593 LELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHI 652

Query:   685 XXXXXXXXXXIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDI 744
                       IP  L   + L  + L  NQ   SLP  +  N +   +L L  N L+G I
Sbjct:   653 DLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELF-NCTKLLVLSLDGNSLNGSI 711

Query:   745 PQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSN 804
             PQ + NL  L++++L  N FSG++P+ +G LS L Y    E+  +L    + G  P    
Sbjct:   712 PQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKL-Y----EL--RLSRNSLTGEIPVEIG 764

Query:   805 IIADVNS-IDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQXXXXXXXXXXXXXX 863
              + D+ S +DLS+NN TG IP  IG LS L  L+LSHNQL+G +P               
Sbjct:   765 QLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVS 824

Query:   864 XXXXAGKIPSLPNFNDPSIYEGNPLLCGAPLPTKC 898
                  GK+    +      + GN  LCG+PL ++C
Sbjct:   825 FNNLGGKLKKQFSRWPADSFLGNTGLCGSPL-SRC 858

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 645 (232.1 bits), Expect = 3.7e-62, P = 3.7e-62
 Identities = 242/813 (29%), Positives = 352/813 (43%)

Query:   114 GSCLGGKINPXXXXXXXXXXXXXXXNDFEGAEIPEYFGQLKN-LRYLNLSFSSFSGEIPP 172
             G  L G I+P               N   G  IP     L + L  L+L  +  SG+IP 
Sbjct:    80 GLGLTGSISPSIGRFNNLIHIDLSSNRLVGP-IPTTLSNLSSSLESLHLFSNLLSGDIPS 138

Query:   173 QLGSLSSLQYLDLYADSFSSNSGSLALHAQXXXXXXXXXXXXXXXXGFVKLDHVGADWLQ 232
             QLGSL +L+ L L  D+    +G++                     G +           
Sbjct:   139 QLGSLVNLKSLKL-GDN--ELNGTIPETFGNLVNLQMLALASCRLTGLIP---------S 186

Query:   233 AVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKL 292
                 L  L  L L   +L+G P+     N TS+++   + N  N ++P  L  L +L  L
Sbjct:   187 RFGRLVQLQTLILQDNELEG-PIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTL 245

Query:   293 YLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEV 352
              L  N F+G IP++  +L  ++ L+L  N  L G +PK    L  L++LDLS+NNL G +
Sbjct:   246 NLGDNSFSGEIPSQLGDLVSIQYLNLIGN-QLQGLIPKRLTELANLQTLDLSSNNLTGVI 304

Query:   353 HEFFDGFSGRPNNLEYLDLSSNSLEGELPKSL-GNLKNLQYLRLSGNSFWGSIPSSIGNL 411
             HE F     R N LE+L L+ N L G LPK++  N  +L+ L LS     G IP+ I N 
Sbjct:   305 HEEF----WRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNC 360

Query:   412 SSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESF----- 466
              SL+ LDLS N + G IP+S  +L EL +  L  NS EG L  S   NL  L+ F     
Sbjct:   361 QSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSS-ISNLTNLQEFTLYHN 419

Query:   467 RLTTEPTKKFVF----NVSYNWVPPFRLKS-IQIENC-----------QVGPSFPVWLQV 510
              L  +  K+  F     + Y +   F  +  ++I NC           ++    P  +  
Sbjct:   420 NLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGR 479

Query:   511 QTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPN-LRSIDLS 569
               +LT + LR   +   IP    +    ++T + L++NQ+ G +P        L    + 
Sbjct:   480 LKDLTRLHLRENELVGNIPASLGN--CHQMTVIDLADNQLSGSIPSSFGFLTALELFMIY 537

Query:   570 SNHFEGTLP---LWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSW----NQLSGR 622
             +N  +G LP   +   N   +    N+F+G +    GS        YLS+    N   G 
Sbjct:   538 NNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSS------YLSFDVTENGFEGD 591

Query:   623 IPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPXXXXXXXXXX 682
             IP  +    +L  L +  N+ +G  P  +        +DIS NSL+G IP          
Sbjct:   592 IPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLT 651

Query:   683 XXXXXXXXXXXXIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSG 742
                         IP  L     L  + L  N+  GSLP  I  +L++   L L  N L+G
Sbjct:   652 HIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIF-SLTNILTLFLDGNSLNG 710

Query:   743 DIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEY 802
              IPQ + NLQ L+ ++L  N  SG +P  IG LS L      E+  +L    + G  P  
Sbjct:   711 SIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLF-----EL--RLSRNALTGEIPVE 763

Query:   803 SNIIADVNS-IDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQXXXXXXXXXXXX 861
                + D+ S +DLS+NN TG+IP  I  L  L  L+LSHNQL G +P             
Sbjct:   764 IGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLN 823

Query:   862 XXXXXXAGKIPSLPNFNDPSIYEGNPLLCGAPL 894
                    GK+    +      + GN  LCG+PL
Sbjct:   824 LSYNNLEGKLKKQFSRWQADAFVGNAGLCGSPL 856

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 189/615 (30%), Positives = 294/615 (47%)

Query:   276 NSAIPPWLFSLTSLTKLYLRWNFFTGHIPN-EFANLKLLEVLDLSNNLDLGGQLP-KLFG 333
             +S + P +  + SL  L + +N   G IP   F NL  L  LD+  N    G +P +LF 
Sbjct:    95 SSILRP-ILRINSLVGLDVSFNNIQGEIPGYAFVNLTSLISLDMCCNR-FNGSIPHELFS 152

Query:   334 ILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYL 393
              L  L+ LDLS N + G +     G      NL+ L L  N + G +P  +G+L  L  L
Sbjct:   153 -LTNLQRLDLSRNVIGGTL----SGDIKELKNLQELILDENLIGGAIPSEIGSLVELLTL 207

Query:   394 RLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQ 453
              L  N F  SIPSS+  L+ L+ +DL  N ++  IP+  G L  L   +L  N   G + 
Sbjct:   208 TLRQNMFNSSIPSSVSRLTKLKTIDLQNNFLSSKIPDDIGNLVNLSTLSLSMNKLSGGIP 267

Query:   454 ESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPF-RLKSIQIE-NCQVGPSFPVWLQVQ 511
              S   NLK LE+ +L  E        +   W+    +LK +++E N ++  +   ++  Q
Sbjct:   268 SS-IHNLKNLETLQL--ENNNGLSGEIPAAWLFGLQKLKVLRLEGNNKLQWNNNGYVFPQ 324

Query:   512 TELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSN 571
              +LT + LR+ G+   IP DW  K  + + YL LS N+++G+ P+ +    +R+I LS N
Sbjct:   325 FKLTHLSLRSCGLEGNIP-DWL-KNQTALVYLDLSINRLEGRFPKWLADLKIRNITLSDN 382

Query:   572 HFEGTLP--LWST-NADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVC 628
                G+LP  L+   +   L L  N FSG +P+ IG    ++  L LS N  SG +P S+ 
Sbjct:   383 RLTGSLPPNLFQRPSLYYLVLSRNNFSGQIPDTIGE--SQVMVLMLSENNFSGSVPKSIT 440

Query:   629 NLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPXXXXXXXXXXXXXXXX 688
              +  L++L +  N+LSGEFP     S + W +DIS+N  +G +P                
Sbjct:   441 KIPFLKLLDLSKNRLSGEFPRFRPESYLEW-LDISSNEFSGDVPAYFGGSTSMLLMSQNN 499

Query:   689 XXXXXXIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRL 748
                    P + +N + L  +DL  N++SG++   IS+  SS  +L LR+N L G IP+ +
Sbjct:   500 FSGE--FPQNFRNLSYLIRLDLHDNKISGTVASLISQLSSSVEVLSLRNNSLKGSIPEGI 557

Query:   749 CNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIA- 807
              NL +L ++DLS NN  G +P  +GNL+ ++            +       P    +I  
Sbjct:   558 SNLTSLKVLDLSENNLDGYLPSSLGNLTCMIKSPEPSAMTIRPYFSSYTDIPNIERLIEI 617

Query:   808 ---DVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQXXXXXXXXXXXXXXX 864
                D+ S+ ++W N    + D   N     +L+LS N+L G IP                
Sbjct:   618 ESEDIFSLVVNWKNSKQVLFDR--NFYLYTLLDLSKNKLHGEIPTSLGNLKSLKVLNLSN 675

Query:   865 XXXAGKIPSLPNFND 879
                +G IP   +F D
Sbjct:   676 NEFSGLIPQ--SFGD 688

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.4__1518__AT2G34930.1 annotation not avaliable (912 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	906
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-69
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-66
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-61
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-08
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	7e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.001
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  248 bits (636), Expect = 2e-69
 Identities = 224/681 (32%), Positives = 321/681 (47%), Gaps = 122/681 (17%)

Query: 45  CLDAER-EGLLAFKESLTDPSGRLSSW-VGQDCCKWNGVYCNNQSGHVTQLNLRNPYQLI 102
            L AE  E LL+FK S+ DP   LS+W    D C W G+ CNN S  V  ++L       
Sbjct: 25  MLHAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSS-RVVSIDL------- 76

Query: 103 NGGVGDSTAYKGSCLGGKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLS 162
                      G  + GKI+ ++  L Y+ T++LS N   G    + F    +LRYLNLS
Sbjct: 77  ----------SGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 163 FSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNL-GFV 221
            ++F+G IP   GS+ +L+ LDL  +  S          +  N +   SSLK+L+L G V
Sbjct: 127 NNNFTGSIPR--GSIPNLETLDLSNNMLS---------GEIPNDIGSFSSLKVLDLGGNV 175

Query: 222 KLDHVGADWLQAVNMLPSLVELRLHYCQLQG-IPLSLPFINFTSISVLDLSENSFNSAIP 280
            +  +      ++  L SL  L L   QL G IP  L      S+  + L  N+ +  IP
Sbjct: 176 LVGKIPN----SLTNLTSLEFLTLASNQLVGQIPRELG--QMKSLKWIYLGYNNLSGEIP 229

Query: 281 PWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKS 340
             +  LTSL  L L +N  TG IP+   NLK L+ L L  N  L G +P     L++L S
Sbjct: 230 YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN-KLSGPIPPSIFSLQKLIS 288

Query: 341 LDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSF 400
           LDLS N+L+GE+ E       +  NLE L L SN+  G++P +L +L  LQ L+L  N F
Sbjct: 289 LDLSDNSLSGEIPELV----IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344

Query: 401 WGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNL 460
            G IP ++G  ++L  LDLS N + G IPE       L    L  NS EG          
Sbjct: 345 SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG---------- 394

Query: 461 KRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILR 520
                                                 ++  S    L     L  V L+
Sbjct: 395 --------------------------------------EIPKS----LGACRSLRRVRLQ 412

Query: 521 NVGISDTIPGDWFSKLSSEITYLILSNNQIKGKL-PRQMNSPNLRSIDLSSNHFEGTLPL 579
           +   S  +P + F+KL   + +L +SNN ++G++  R+ + P+L+ + L+          
Sbjct: 413 DNSFSGELPSE-FTKLPL-VYFLDISNNNLQGRINSRKWDMPSLQMLSLAR--------- 461

Query: 580 WSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIR 639
                       N+F G LP++ GS   RL+ L LS NQ SG +P  + +L +L  L + 
Sbjct: 462 ------------NKFFGGLPDSFGS--KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLS 507

Query: 640 SNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSL 699
            NKLSGE P+     +    +D+S+N L+G IP+SF  +  LS L LS N LSG IP +L
Sbjct: 508 ENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL 567

Query: 700 QNCTGLTSIDLGGNQLSGSLP 720
            N   L  +++  N L GSLP
Sbjct: 568 GNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  238 bits (610), Expect = 5e-66
 Identities = 190/526 (36%), Positives = 272/526 (51%), Gaps = 33/526 (6%)

Query: 255 LSLPFINFTSISVLDLSENSFNSAIPPWLFSLT-SLTKLYLRWNFFTGHIPNEFANLKLL 313
           +S        I  ++LS N  +  IP  +F+ + SL  L L  N FTG IP     +  L
Sbjct: 85  ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS--IPNL 142

Query: 314 EVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSS 373
           E LDLSNN+ L G++P   G    LK LDL  N L G++            +LE+L L+S
Sbjct: 143 ETLDLSNNM-LSGEIPNDIGSFSSLKVLDLGGNVLVGKI----PNSLTNLTSLEFLTLAS 197

Query: 374 NSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFG 433
           N L G++P+ LG +K+L+++ L  N+  G IP  IG L+SL  LDL YN + G IP S G
Sbjct: 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257

Query: 434 KLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPF--RLK 491
            L  L    L QN   G +  S F +L++L S  L+         N     +P    +L+
Sbjct: 258 NLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSD--------NSLSGEIPELVIQLQ 308

Query: 492 SIQI----ENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSN 547
           +++I     N   G   PV L     L  + L +   S  IP +      + +T L LS 
Sbjct: 309 NLEILHLFSNNFTG-KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH--NNLTVLDLST 365

Query: 548 NQIKGKLPRQM-NSPNLRSIDLSSNHFEGTLP--LWSTNADE-LFLQDNRFSGPLPENIG 603
           N + G++P  + +S NL  + L SN  EG +P  L +  +   + LQDN FSG LP    
Sbjct: 366 NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT 425

Query: 604 SLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDIS 663
            L P +  L +S N L GRI S   ++  LQ+LS+  NK  G  P+  + S+    +D+S
Sbjct: 426 KL-PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLS 483

Query: 664 NNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWI 723
            N  +G++P   GSL  L  L LS N LSG IP  L +C  L S+DL  NQLSG +P   
Sbjct: 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASF 543

Query: 724 SENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIP 769
           SE +     L L  N LSG+IP+ L N+++L  +++SHN+  G++P
Sbjct: 544 SE-MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  223 bits (570), Expect = 9e-61
 Identities = 185/564 (32%), Positives = 277/564 (49%), Gaps = 33/564 (5%)

Query: 337 RLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNL-KNLQYLRL 395
           R+ S+DLS  N++G++             ++ ++LS+N L G +P  +     +L+YL L
Sbjct: 70  RVVSIDLSGKNISGKISSAIFRLP----YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 396 SGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQES 455
           S N+F GSIP   G++ +L  LDLS N ++G IP   G  S L   +L  N   G +  S
Sbjct: 126 SNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183

Query: 456 QFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELT 515
              NL  LE   L +    + V  +         LK I +    +    P  +   T L 
Sbjct: 184 -LTNLTSLEFLTLAS---NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239

Query: 516 SVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQM-NSPNLRSIDLSSNHFE 574
            + L    ++  IP      L   + YL L  N++ G +P  + +   L S+DLS N   
Sbjct: 240 HLDLVYNNLTGPIPSS-LGNLK-NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297

Query: 575 GTLP---LWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLE 631
           G +P   +   N + L L  N F+G +P  + SL PRLQ L L  N+ SG IP ++    
Sbjct: 298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNKFSGEIPKNLGKHN 356

Query: 632 DLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNL 691
           +L +L + +N L+GE P     S   + + + +NSL G IP S G+ RSL  + L +N+ 
Sbjct: 357 NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF 416

Query: 692 SGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQ--RLC 749
           SG +P        +  +D+  N L G +     + + S  ML L  N   G +P      
Sbjct: 417 SGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD-MPSLQMLSLARNKFFGGLPDSFGSK 475

Query: 750 NLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADV 809
            L+NL   DLS N FSGA+PR +G+LS L+    SE         + G  P+  +    +
Sbjct: 476 RLENL---DLSRNQFSGAVPRKLGSLSELMQLKLSE-------NKLSGEIPDELSSCKKL 525

Query: 810 NSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAG 869
            S+DLS N L+GQIP     +  L  L+LS NQLSG IP++L ++ SL ++N+S N+L G
Sbjct: 526 VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585

Query: 870 KIPSLPNF--NDPSIYEGNPLLCG 891
            +PS   F   + S   GN  LCG
Sbjct: 586 SLPSTGAFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 82.6 bits (204), Expect = 4e-16
 Identities = 44/104 (42%), Positives = 60/104 (57%)

Query: 369 LDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTI 428
           L L +  L G +P  +  L++LQ + LSGNS  G+IP S+G+++SL  LDLSYN  NG+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 429 PESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEP 472
           PES G+L+ L   NL  NS  G +  +    L    SF  T   
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 79.5 bits (196), Expect = 4e-15
 Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 17/105 (16%)

Query: 811 SIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGK 870
           SI+LS N++ G IP  +G++++L +L+LS+N  +G+IP+SL  L SL  LNL+ N+L+G+
Sbjct: 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR 505

Query: 871 IPS----LP------NFNDPSIYEGNPLLCGAPLPTKCPGKHSPL 905
           +P+            NF D      N  LCG P    C G H  +
Sbjct: 506 VPAALGGRLLHRASFNFTD------NAGLCGIPGLRAC-GPHLSV 543

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 73.3 bits (180), Expect = 3e-13
 Identities = 33/68 (48%), Positives = 50/68 (73%)

Query: 366 LEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMN 425
           L+ ++LS NS+ G +P SLG++ +L+ L LS NSF GSIP S+G L+SLR L+L+ N ++
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 426 GTIPESFG 433
           G +P + G
Sbjct: 504 GRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 72.2 bits (177), Expect = 6e-13
 Identities = 36/85 (42%), Positives = 49/85 (57%)

Query: 636 LSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGI 695
           L + +  L G  PN     +    I++S NS+ G+IP S GS+ SL VL LS N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 696 PCSLQNCTGLTSIDLGGNQLSGSLP 720
           P SL   T L  ++L GN LSG +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 71.8 bits (176), Expect = 1e-12
 Identities = 56/149 (37%), Positives = 79/149 (53%), Gaps = 10/149 (6%)

Query: 726 NLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLS-ALVYGNNS 784
           N S    + L    +SG I   +  L  +  I+LS+N  SG IP  I   S +L Y N S
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 785 EVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLS 844
                       G  P  S  I ++ ++DLS N L+G+IP++IG+ S+L +L+L  N L 
Sbjct: 127 N-------NNFTGSIPRGS--IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177

Query: 845 GAIPQSLSSLASLSKLNLSFNNLAGKIPS 873
           G IP SL++L SL  L L+ N L G+IP 
Sbjct: 178 GKIPNSLTNLTSLEFLTLASNQLVGQIPR 206

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.4 bits (175), Expect = 1e-12
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 659 GIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGS 718
           G+ + N  L G IP+    LR L  + LS N++ G IP SL + T L  +DL  N  +GS
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 719 LPLWISENLSSFFMLRLRSNLLSGDIPQRL 748
           +P  + + L+S  +L L  N LSG +P  L
Sbjct: 482 IPESLGQ-LTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.3 bits (167), Expect = 1e-11
 Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 34/138 (24%)

Query: 740 LSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRN 799
           L G IP  +  L++L  I+LS N+  G IP  +G++++L                     
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLE-------------------- 469

Query: 800 PEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSK 859
                       +DLS+N+  G IP+ +G L++L ILNL+ N LSG +P +L     L +
Sbjct: 470 -----------VLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL-LHR 517

Query: 860 LNLSFNNLAG--KIPSLP 875
            + +F + AG   IP L 
Sbjct: 518 ASFNFTDNAGLCGIPGLR 535

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 60.6 bits (147), Expect = 3e-09
 Identities = 67/209 (32%), Positives = 94/209 (44%), Gaps = 21/209 (10%)

Query: 117 LGGKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGS 176
           L G+I  SL   + L  + L  N F G E+P  F +L  + +L++S ++  G I  +   
Sbjct: 392 LEGEIPKSLGACRSLRRVRLQDNSFSG-ELPSEFTKLPLVYFLDISNNNLQGRINSRKWD 450

Query: 177 LSSLQYLDLYADSFSSN----SGSLALHAQNL--NWLSG--------LSSLKLLNLGFVK 222
           + SLQ L L  + F        GS  L   +L  N  SG        LS L  L L   K
Sbjct: 451 MPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK 510

Query: 223 LDHVGADWLQAVNMLPSLVELRLHYCQLQG-IPLSLPFINFTSISVLDLSENSFNSAIPP 281
           L     D L +      LV L L + QL G IP S  F     +S LDLS+N  +  IP 
Sbjct: 511 LSGEIPDELSSCK---KLVSLDLSHNQLSGQIPAS--FSEMPVLSQLDLSQNQLSGEIPK 565

Query: 282 WLFSLTSLTKLYLRWNFFTGHIPNEFANL 310
            L ++ SL ++ +  N   G +P+  A L
Sbjct: 566 NLGNVESLVQVNISHNHLHGSLPSTGAFL 594

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.6 bits (147), Expect = 3e-09
 Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 10/111 (9%)

Query: 275 FNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGI 334
           F+S    W      L    LR     G IPN+ + L+ L+ ++LS N  + G +P   G 
Sbjct: 411 FDSTKGKWFIDGLGLDNQGLR-----GFIPNDISKLRHLQSINLSGN-SIRGNIPPSLGS 464

Query: 335 LRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLG 385
           +  L+ LDLS N+ NG + E      G+  +L  L+L+ NSL G +P +LG
Sbjct: 465 ITSLEVLDLSYNSFNGSIPESL----GQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.2 bits (146), Expect = 3e-09
 Identities = 52/172 (30%), Positives = 74/172 (43%), Gaps = 32/172 (18%)

Query: 46  LDAEREGLLAFKESLTDPSGRLSSWVGQDCCK----WNGVYC--NNQSGH--VTQLNLRN 97
           L  E   L   K SL  P  R   W G  C      W+G  C  ++  G   +  L L N
Sbjct: 370 LLEEVSALQTLKSSLGLPL-RFG-WNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN 427

Query: 98  PYQLINGGVGDSTAYKGSCLGGKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLR 157
                              L G I   +  L++L +++LS N   G  IP   G + +L 
Sbjct: 428 -----------------QGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLE 469

Query: 158 YLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFS----SNSGSLALHAQNLN 205
            L+LS++SF+G IP  LG L+SL+ L+L  +S S    +  G   LH  + N
Sbjct: 470 VLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN 521

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 6e-09
 Identities = 27/64 (42%), Positives = 38/64 (59%)

Query: 809 VNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLA 868
           ++ + L    L G IP++I  L  L  +NLS N + G IP SL S+ SL  L+LS+N+  
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 869 GKIP 872
           G IP
Sbjct: 480 GSIP 483

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 59.1 bits (143), Expect = 8e-09
 Identities = 36/76 (47%), Positives = 47/76 (61%), Gaps = 3/76 (3%)

Query: 804 NIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLA-SLSKLNL 862
           N  + V SIDLS  N++G+I   I  L  +  +NLS+NQLSG IP  + + + SL  LNL
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 863 SFNNLAGKIP--SLPN 876
           S NN  G IP  S+PN
Sbjct: 126 SNNNFTGSIPRGSIPN 141

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.9 bits (140), Expect = 2e-08
 Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 29/124 (23%)

Query: 526 DTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNS-PNLRSIDLSSNHFEGTLPLWSTNA 584
           D+  G WF      I  L L N  ++G +P  ++   +L+SI+LS N   G +P      
Sbjct: 412 DSTKGKWF------IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP----- 460

Query: 585 DELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLS 644
                           ++GS +  L+ L LS+N  +G IP S+  L  L+IL++  N LS
Sbjct: 461 ----------------SLGS-ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 645 GEFP 648
           G  P
Sbjct: 504 GRVP 507

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 56.1 bits (135), Expect = 4e-08
 Identities = 68/221 (30%), Positives = 96/221 (43%), Gaps = 30/221 (13%)

Query: 261 NFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSN 320
             T+++ LDL  N+     P      ++L +L L  N     +P+   NL  L+ LDLS 
Sbjct: 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172

Query: 321 NLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGEL 380
           N      LPKL   L  L +LDLS N +               + LE LDLS+NS+  EL
Sbjct: 173 NDLS--DLPKLLSNLSNLNNLDLSGNKI-----SDLPPEIELLSALEELDLSNNSII-EL 224

Query: 381 PKSLGNLKNLQYLRLSGNSFW---------------------GSIPSSIGNLSSLRKLDL 419
             SL NLKNL  L LS N                         S  SS+G+L++LR+LDL
Sbjct: 225 LSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDL 284

Query: 420 SYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNL 460
           S N ++  +P     L  L     L  + + +  +   + L
Sbjct: 285 SGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILL 325

Length = 394

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 23/42 (54%), Positives = 27/42 (64%), Gaps = 3/42 (7%)

Query: 46 LDAEREGLLAFKESLT-DPSGRLSSWV--GQDCCKWNGVYCN 84
          L+ +R+ LLAFK SL  DPSG LSSW     D C W GV C+
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 2e-06
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 265 ISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDL 324
           I  L L        IP  +  L  L  + L  N   G+IP    ++  LEVLDLS N   
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN-SF 478

Query: 325 GGQLPKLFGILRRLKSLDLSANNLNGEV 352
            G +P+  G L  L+ L+L+ N+L+G V
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 2e-06
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 268 LDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQ 327
           ++LS NS    IPP L S+TSL  L L +N F G IP     L  L +L+L+ N  L G+
Sbjct: 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN-SLSGR 505

Query: 328 LPKLFG 333
           +P   G
Sbjct: 506 VPAALG 511

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 50.8 bits (122), Expect = 2e-06
 Identities = 63/217 (29%), Positives = 85/217 (39%), Gaps = 39/217 (17%)

Query: 238 PSLVELRLHYCQLQGIPLSLP-----FINFTSISVLDLSENSFNSAIPPWLFSLT---SL 289
           PSL EL L   +   IP  L            +  LDLS+N+        L SL    SL
Sbjct: 51  PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSL 110

Query: 290 TKLYLRWNFFTGHIPNEFANLKL-----------LEVLDLSNNLDLGG---QLPKLFGIL 335
            +L L  N            L+L           LE L L  N   G     L K     
Sbjct: 111 QELKLNNN------GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRAN 164

Query: 336 RRLKSLDLSANNLNGE-VHEFFDGFSGRPNNLEYLDLSSNSLEGE----LPKSLGNLKNL 390
           R LK L+L+ N +    +    +G      NLE LDL++N L  E    L ++L +LK+L
Sbjct: 165 RDLKELNLANNGIGDAGIRALAEGLKANC-NLEVLDLNNNGLTDEGASALAETLASLKSL 223

Query: 391 QYLRLSGNSF--WGS---IPSSIGNLSSLRKLDLSYN 422
           + L L  N+    G+     + +    SL  L LS N
Sbjct: 224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 24/56 (42%), Positives = 31/56 (55%)

Query: 660 IDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQL 715
           +D+SNN LT     +F  L +L VL LS NNL+   P +      L S+DL GN L
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.6 bits (121), Expect = 3e-06
 Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 10/89 (11%)

Query: 130 YLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADS 189
           ++D L L      G  IP    +L++L+ +NLS +S  G IPP LGS++SL+ LDL   S
Sbjct: 419 FIDGLGLDNQGLRG-FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDL---S 474

Query: 190 FSSNSGSLALHAQNLNWLSGLSSLKLLNL 218
           ++S +GS+         L  L+SL++LNL
Sbjct: 475 YNSFNGSIP------ESLGQLTSLRILNL 497

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.7 bits (104), Expect = 7e-06
 Identities = 25/57 (43%), Positives = 32/57 (56%)

Query: 811 SIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNL 867
           S+DLS N LT         L  L +L+LS N L+   P++ S L SL  L+LS NNL
Sbjct: 4   SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.4 bits (118), Expect = 8e-06
 Identities = 27/53 (50%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 252 GIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIP 304
            IP SL   + TS+ VLDLS NSFN +IP  L  LTSL  L L  N  +G +P
Sbjct: 457 NIPPSLG--SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 78/318 (24%), Positives = 114/318 (35%), Gaps = 67/318 (21%)

Query: 123 PSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSL----- 177
           P LL L+ L     +L +     +        +L+ L LS +  +G IP  L SL     
Sbjct: 20  PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLT 78

Query: 178 --SSLQYLDLYADSFS-SNSGSLALHAQNLNWLSGLSSLKLLN--LGFVKLDHVGADWLQ 232
               LQ LDL  ++      G L    ++L   S L  LKL N  LG   L  + A  L+
Sbjct: 79  KGCGLQELDLSDNALGPDGCGVL----ESLLRSSSLQELKLNNNGLGDRGLRLL-AKGLK 133

Query: 233 AVNMLPSLVELRLHYCQLQG---IPLSLPFINFTSISVLDLSENSFN-SAIPPWLFSLTS 288
            +   P+L +L L   +L+G     L+        +  L+L+ N    + I         
Sbjct: 134 DLP--PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR-------- 183

Query: 289 LTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNN--LDLGG-QLPKLFGILRRLKSLDLSA 345
                         +         LEVLDL+NN   D G   L +    L+ L+ L+L  
Sbjct: 184 -------------ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD 230

Query: 346 NNL-NGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSI 404
           NNL +               +L  L LS N +  +  K L      + L           
Sbjct: 231 NNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDL-----AEVLA---------- 275

Query: 405 PSSIGNLSSLRKLDLSYN 422
                   SL +LDL  N
Sbjct: 276 -----EKESLLELDLRGN 288

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 337 RLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLS 396
            LKSLDLS N L       F G      NL+ LDLS N+L    P++   L +L+ L LS
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLP----NLKVLDLSGNNLTSISPEAFSGLPSLRSLDLS 56

Query: 397 GNSF 400
           GN+ 
Sbjct: 57  GNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.3 bits (110), Expect = 6e-05
 Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 6/91 (6%)

Query: 519 LRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNS-PNLRSIDLSSNHFEGTL 577
           L N G+   IP D  SKL   +  + LS N I+G +P  + S  +L  +DLS N F G++
Sbjct: 425 LDNQGLRGFIPNDI-SKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 578 PL---WSTNADELFLQDNRFSGPLPENIGSL 605
           P      T+   L L  N  SG +P  +G  
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.7 bits (108), Expect = 8e-05
 Identities = 73/239 (30%), Positives = 107/239 (44%), Gaps = 39/239 (16%)

Query: 659 GIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGS 718
            +D+ NN++T   P       +L  L LS+N +   +P  L+N   L ++DL  N LS  
Sbjct: 120 SLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLS-D 177

Query: 719 LPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSAL 778
           LP  +  NLS+   L L  N +S D+P  +  L  L  +DLS NN    +   + NL  L
Sbjct: 178 LP-KLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS-NNSIIELLSSLSNLKNL 234

Query: 779 VYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNL 838
                                          + ++LS NN    +P+ IGNLS L  L+L
Sbjct: 235 -------------------------------SGLELS-NNKLEDLPESIGNLSNLETLDL 262

Query: 839 SHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSLPNFNDPSIYEGNPLLCGAPLPTK 897
           S+NQ+S     SL SL +L +L+LS N+L+  +P +           N LL    L  K
Sbjct: 263 SNNQIS--SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELK 319

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 64/278 (23%), Positives = 98/278 (35%), Gaps = 52/278 (18%)

Query: 121 INPSLLHLKYLDTLDLSLNDFEGAE-----IPEYFGQLKNLRYLNLSFSSFSGEIPPQLG 175
           +  +L     L  L LSLN+          + +   +   L+ L+LS ++   +    L 
Sbjct: 43  LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102

Query: 176 SLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLN--LGFVKLDHVGADWLQA 233
           SL                              S L  LKL N  LG   L  + A  L+ 
Sbjct: 103 SLLR---------------------------SSSLQELKLNNNGLGDRGLRLL-AKGLKD 134

Query: 234 VNMLPSLVELRLHYCQLQG---IPLSLPFINFTSISVLDLSENSFNSAIPPWLF----SL 286
           +   P+L +L L   +L+G     L+        +  L+L+ N    A    L     + 
Sbjct: 135 LP--PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN 192

Query: 287 TSLTKLYLRWNFFT----GHIPNEFANLKLLEVLDLSNNL--DLGGQ--LPKLFGILRRL 338
            +L  L L  N  T      +    A+LK LEVL+L +N   D G       L      L
Sbjct: 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISL 252

Query: 339 KSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSL 376
            +L LS N++  +  +          +L  LDL  N  
Sbjct: 253 LTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 43.3 bits (102), Expect = 7e-04
 Identities = 76/282 (26%), Positives = 119/282 (42%), Gaps = 35/282 (12%)

Query: 145 EIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNL 204
           EIP+      NL  L LS  S   E+P      SS+QYL+   D   S   +L +    +
Sbjct: 649 EIPD-LSMATNLETLKLSDCSSLVELP------SSIQYLNKLEDLDMSRCENLEILPTGI 701

Query: 205 NWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPS-LVELRLHYCQLQGIPLSLPFINFT 263
           N    L SL  LNL        G   L++   + + +  L L    ++  P +L   N  
Sbjct: 702 N----LKSLYRLNLS-------GCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLD 750

Query: 264 SISVLDLSENSFNSAIPPWLFSLT----SLTKLYLRWNFFTGHIPNEFANLKLLEVLDLS 319
            + + ++        + P    +T    SLT+L+L        +P+   NL  LE L++ 
Sbjct: 751 ELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIE 810

Query: 320 NNLDLGGQLPKLFGI-LRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEG 378
           N ++L   LP   GI L  L+SLDLS  +           F     N+  L+LS   +E 
Sbjct: 811 NCINLE-TLPT--GINLESLESLDLSGCSR-------LRTFPDISTNISDLNLSRTGIE- 859

Query: 379 ELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLS 420
           E+P  +    NL +L ++G +    +  +I  L  L  +D S
Sbjct: 860 EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFS 901

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.9 bits (98), Expect = 0.001
 Identities = 75/268 (27%), Positives = 115/268 (42%), Gaps = 20/268 (7%)

Query: 512 TELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSN 571
           T LTS+ L N  I+D  P      L S +  L LS+N+I+       N PNL+++DLS N
Sbjct: 116 TNLTSLDLDNNNITDIPP--LIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN 173

Query: 572 HFE--GTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCN 629
                  L    +N + L L  N+ S  LP  I  L+  L+ L LS N +   + SS+ N
Sbjct: 174 DLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIE-LLSALEELDLSNNSII-ELLSSLSN 230

Query: 630 LEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNN 689
           L++L  L + +NKL  + P       +     +  ++   S  SS GSL +L  L LS N
Sbjct: 231 LKNLSGLELSNNKLE-DLPE--SIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGN 287

Query: 690 NLS--------GGIPCSLQNCTGLTSIDLGGNQLSG--SLPLWISENLSSFFMLRLRSNL 739
           +LS          +   L     LT   L     S   +  +  +   SS   L +  +L
Sbjct: 288 SLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPEALSILESL 347

Query: 740 LSGDIPQRLCNLQNLHIIDLSHNNFSGA 767
            +        +  NL+   + + N  G+
Sbjct: 348 NNLWTLDNALDESNLNRYIVKNPNAIGS 375

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 60/242 (24%), Positives = 89/242 (36%), Gaps = 41/242 (16%)

Query: 660 IDISNNSLTGS----IPSSFGSLRSLSVLLLSNNNLSGGIP-------CSLQNCTGLTSI 708
           + +  N+L       + S+     SL  L LS N   G IP         L    GL  +
Sbjct: 28  LRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET-GRIPRGLQSLLQGLTKGCGLQEL 86

Query: 709 DLGGNQLSGSLPLWISENLSSFFM--LRLRSNLLSGDIPQRLC-----NLQNLHIIDLSH 761
           DL  N L       +   L S  +  L+L +N L     + L          L  + L  
Sbjct: 87  DLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGR 146

Query: 762 NNFSGA-------IPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDL 814
           N   GA         R   +L  L   NN  +    I  + +G      N+      +DL
Sbjct: 147 NRLEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALAEGL-KANCNL----EVLDL 200

Query: 815 SWNNLT----GQIPDEIGNLSALHILNLSHNQLSGAI-----PQSLSSLASLSKLNLSFN 865
           + N LT      + + + +L +L +LNL  N L+ A         LS   SL  L+LS N
Sbjct: 201 NNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260

Query: 866 NL 867
           ++
Sbjct: 261 DI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	906
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.86
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.64
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.62
PLN03150	623	hypothetical protein; Provisional	99.44
PLN03150	623	hypothetical protein; Provisional	99.31
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.27
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.22
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.2
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.11
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.1
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.08
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.94
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.94
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.94
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.88
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.88
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.86
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.76
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.74
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.66
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.64
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.63
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.55
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.55
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.55
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.27
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.25
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.18
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.17
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.08
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.07
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.06
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.04
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.92
KOG4341	483	consensus F-box protein containing LRR [General fu	97.85
KOG4341	483	consensus F-box protein containing LRR [General fu	97.76
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.75
PRK15386	426	type III secretion protein GogB; Provisional	97.75
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.73
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.62
PRK15386	426	type III secretion protein GogB; Provisional	97.58
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.54
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.28
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.25
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.11
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.92
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.9
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.45
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.25
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.15
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.11
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.76
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.16
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.88
KOG4308	478	consensus LRR-containing protein [Function unknown	93.28
KOG4308	478	consensus LRR-containing protein [Function unknown	92.91
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.22
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.79
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	88.96
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.65
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.42
smart00370	26	LRR Leucine-rich repeats, outliers.	85.42
KOG3864	221	consensus Uncharacterized conserved protein [Funct	84.52
smart00370	26	LRR Leucine-rich repeats, outliers.	83.31
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	83.31

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.5e-69  Score=673.05  Aligned_cols=585  Identities=37%  Similarity=0.574  Sum_probs=420.8

Q ss_pred             HHHHHHHHHHHhhCCCCCCCCCCC-CCCCCCCccceEecCCCCcEEEEecCCcccccCCCcCCCcCCCCccccccccccc
Q 002574           47 DAEREGLLAFKESLTDPSGRLSSW-VGQDCCKWNGVYCNNQSGHVTQLNLRNPYQLINGGVGDSTAYKGSCLGGKINPSL  125 (906)
Q Consensus        47 ~~~~~~ll~~k~~~~~~~~~l~~W-~~~~~c~w~gv~C~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  125 (906)
                      ++|++||++||+++.+|.+.+.+| ...+||.|.||+|+. .++|+.|+|+++                 .+.|.+++.+
T Consensus        28 ~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~-----------------~i~~~~~~~~   89 (968)
T PLN00113         28 AEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGK-----------------NISGKISSAI   89 (968)
T ss_pred             HHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCC-----------------CccccCChHH
Confidence            479999999999998888888999 467899999999975 579999999987                 7788888889


Q ss_pred             cCCCCCCEEeCCCCCCCCCCCChhhh-cCCCCCeeeccCCcCccCCCcCcCCCCCCcEEEccCCCCCCCcCCccccccch
Q 002574          126 LHLKYLDTLDLSLNDFEGAEIPEYFG-QLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNL  204 (906)
Q Consensus       126 ~~l~~L~~L~Ls~n~~~~~~lp~~l~-~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~  204 (906)
                      ..+++|++|+|++|.+.+. +|..+. .+++|++|++++|++++.+|.  +.+++|++|++++|.+.+            
T Consensus        90 ~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~------------  154 (968)
T PLN00113         90 FRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSG------------  154 (968)
T ss_pred             hCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccc------------
Confidence            9999999999999998876 777655 888899999888888877664  334444444444333211            


Q ss_pred             hhhcCCCCCcEEECCCccCCCCCcchHHHhcCCCCCcEEEccCCcCCCCCCccCcCCCCcccEEECCCCcCCCCChhhhh
Q 002574          205 NWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLF  284 (906)
Q Consensus       205 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~  284 (906)
                                                                      ..+ ..+.++++|++|++++|.+.+.+|..++
T Consensus       155 ------------------------------------------------~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~  185 (968)
T PLN00113        155 ------------------------------------------------EIP-NDIGSFSSLKVLDLGGNVLVGKIPNSLT  185 (968)
T ss_pred             ------------------------------------------------cCC-hHHhcCCCCCEEECccCcccccCChhhh
Confidence                                                            111 1244455566666666666555666666


Q ss_pred             cCCCCCEEEeecccccccCchhhcCCCCCCeEeCCCCCCCCCCcchhhhcCCCCCEEEccCCcCCcccccccccCCCCCC
Q 002574          285 SLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPN  364 (906)
Q Consensus       285 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~  364 (906)
                      ++++|++|++++|.+.+.+|..++++++|++|++++| .+.+.+|..++.+++|++|++++|.+++..|..+..+.    
T Consensus       186 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~----  260 (968)
T PLN00113        186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN-NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK----  260 (968)
T ss_pred             hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC-ccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCC----
Confidence            6666666666666665555555555666666666555 55555555555555555555555555544444444444    


Q ss_pred             CccEEECcCCCCCCccchhccCCCCCceeeccCccccCCCCccCCCCCCCCEEeCcCccCCcccccchhccccCceeecC
Q 002574          365 NLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLL  444 (906)
Q Consensus       365 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~  444 (906)
                      +|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+++
T Consensus       261 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~  340 (968)
T PLN00113        261 NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW  340 (968)
T ss_pred             CCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECc
Confidence            45555555555444444444444444444444444444444444444444444444444444444433333333333333


Q ss_pred             CCCccCCCChHHhhccccccEeecCCCCCcceeeeccCCCcCCCCccEEEeecccCCCCCChhcccCCcccEEEccCCCc
Q 002574          445 QNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGI  524 (906)
Q Consensus       445 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  524 (906)
                      +|.+.+.+|.                                                                      
T Consensus       341 ~n~l~~~~p~----------------------------------------------------------------------  350 (968)
T PLN00113        341 SNKFSGEIPK----------------------------------------------------------------------  350 (968)
T ss_pred             CCCCcCcCCh----------------------------------------------------------------------
Confidence            3332222111                                                                      


Q ss_pred             cCCCChhhhhhcCCCccEEEccCCcccCCCCCCCCCCCccEEeccCccCcccCCCCcccccccccccccCCCCCCchhhc
Q 002574          525 SDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGS  604 (906)
Q Consensus       525 ~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~  604 (906)
                                                                                                  .+. 
T Consensus       351 ----------------------------------------------------------------------------~l~-  353 (968)
T PLN00113        351 ----------------------------------------------------------------------------NLG-  353 (968)
T ss_pred             ----------------------------------------------------------------------------HHh-
Confidence                                                                                        111 


Q ss_pred             ccccceeeccccccccccCCCCCCCCCCCcEEEccCCcCcccCCCCccCCCCccEEeCCCCcccccCCcCCCCCCCCCEE
Q 002574          605 LMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVL  684 (906)
Q Consensus       605 ~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  684 (906)
                      .+++|+.|++++|.+++.+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..|..++.|+.|
T Consensus       354 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  433 (968)
T PLN00113        354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFL  433 (968)
T ss_pred             CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEE
Confidence            12334444444455555555666667788888888888888888888888888888888888888888888888899999


Q ss_pred             ECcCCccccccccccccCCCCCEEEccCCcCcccccHHHHhcCCCCcEEEccCCccccccCccccCCCCCCEEeCCCCcC
Q 002574          685 LLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNF  764 (906)
Q Consensus       685 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  764 (906)
                      ++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+.  .++|+.|++++|++.+.+|..+..+++|+.|++++|++
T Consensus       434 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~--~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  511 (968)
T PLN00113        434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG--SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL  511 (968)
T ss_pred             ECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc--cccceEEECcCCccCCccChhhhhhhccCEEECcCCcc
Confidence            9999998888888888889999999999999888887654  68999999999999999999999999999999999999


Q ss_pred             CCCCCcccccccccccCCCccchheeeeeeecCCCcccccccCcccEEEcCCCcccccCChhhhccCCCCEEeCcCCccc
Q 002574          765 SGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLS  844 (906)
Q Consensus       765 ~~~ip~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  844 (906)
                      ++.+|..++++++|                               +.|+|++|.+++.+|..++++++|+.|||++|+++
T Consensus       512 ~~~~p~~~~~l~~L-------------------------------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  560 (968)
T PLN00113        512 SGEIPDELSSCKKL-------------------------------VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS  560 (968)
T ss_pred             eeeCChHHcCccCC-------------------------------CEEECCCCcccccCChhHhCcccCCEEECCCCccc
Confidence            99999999888888                               89999999999999999999999999999999999


Q ss_pred             ccccccccCCCCCCeEeCcCCcccccCCCC---CCCCCCCccCCCCCCCCCCC---CCCCC
Q 002574          845 GAIPQSLSSLASLSKLNLSFNNLAGKIPSL---PNFNDPSIYEGNPLLCGAPL---PTKCP  899 (906)
Q Consensus       845 ~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~---~~~~~~~~~~gn~~lc~~~l---~~~c~  899 (906)
                      +.+|..+.++++|++|++++|+++|.+|..   .+|...+ |.|||++||.+.   ..+|.
T Consensus       561 ~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~-~~~n~~lc~~~~~~~~~~c~  620 (968)
T PLN00113        561 GEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASA-VAGNIDLCGGDTTSGLPPCK  620 (968)
T ss_pred             ccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhh-hcCCccccCCccccCCCCCc
Confidence            999999999999999999999999999987   5667777 999999998652   24564

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2e-54  Score=539.16  Aligned_cols=512  Identities=36%  Similarity=0.571  Sum_probs=341.2

Q ss_pred             cccEEECCCCcCCCCChhhhhcCCCCCEEEeecccccccCchhhc-CCCCCCeEeCCCCCCCCCCcchhhhcCCCCCEEE
Q 002574          264 SISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFA-NLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLD  342 (906)
Q Consensus       264 ~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~  342 (906)
                      +++.|++++|.+.+.++..+..+++|+.|++++|.+.+.+|..+. .+++|++|++++| .+.+.+|.  +.+++|++|+
T Consensus        70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~~p~--~~l~~L~~L~  146 (968)
T PLN00113         70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN-NFTGSIPR--GSIPNLETLD  146 (968)
T ss_pred             cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC-ccccccCc--cccCCCCEEE
Confidence            344444444444444444444444444444444444444443322 4444444444444 44433332  2344444444


Q ss_pred             ccCCcCCcccccccccCCCCCCCccEEECcCCCCCCccchhccCCCCCceeeccCccccCCCCccCCCCCCCCEEeCcCc
Q 002574          343 LSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYN  422 (906)
Q Consensus       343 Ls~n~l~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  422 (906)
                      +++|.+++..|..+..+.    +|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++.+++|++|++++|
T Consensus       147 Ls~n~~~~~~p~~~~~l~----~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  222 (968)
T PLN00113        147 LSNNMLSGEIPNDIGSFS----SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN  222 (968)
T ss_pred             CcCCcccccCChHHhcCC----CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC
Confidence            444444444444444333    4444444444444444444444444444444444444444444444444444444444


Q ss_pred             cCCcccccchhccccCceeecCCCCccCCCChHHhhccccccEeecCCCCCcceeeeccCCCcCCCCccEEEeecccCCC
Q 002574          423 GMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGP  502 (906)
Q Consensus       423 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  502 (906)
                      .+.+.+|..++++++|+.|++++|.+.+..|. .+.++++|+.|++++|                           .+.+
T Consensus       223 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n---------------------------~l~~  274 (968)
T PLN00113        223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQN---------------------------KLSG  274 (968)
T ss_pred             ccCCcCChhHhcCCCCCEEECcCceeccccCh-hHhCCCCCCEEECcCC---------------------------eeec
Confidence            44444444444444444444444444443333 3333333333333332                           1112


Q ss_pred             CCChhcccCCcccEEEccCCCccCCCChhhhhhcCCCccEEEccCCcccCCCCCCCC-CCCccEEeccCccCcccCCCCc
Q 002574          503 SFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMN-SPNLRSIDLSSNHFEGTLPLWS  581 (906)
Q Consensus       503 ~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~  581 (906)
                      .+|.++..+++|++|++                          ++|.+.+.+|..+. .++|++|++++           
T Consensus       275 ~~p~~l~~l~~L~~L~L--------------------------s~n~l~~~~p~~~~~l~~L~~L~l~~-----------  317 (968)
T PLN00113        275 PIPPSIFSLQKLISLDL--------------------------SDNSLSGEIPELVIQLQNLEILHLFS-----------  317 (968)
T ss_pred             cCchhHhhccCcCEEEC--------------------------cCCeeccCCChhHcCCCCCcEEECCC-----------
Confidence            22223333333333333                          33333333322211 12333333333           


Q ss_pred             ccccccccccccCCCCCCchhhcccccceeeccccccccccCCCCCCCCCCCcEEEccCCcCcccCCCCccCCCCccEEe
Q 002574          582 TNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGID  661 (906)
Q Consensus       582 ~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~  661 (906)
                                |.+.+.+|..+. .+++|+.|++++|.+.+.+|..++.+++|+.|++++|++++.+|..+..+++|+.|+
T Consensus       318 ----------n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~  386 (968)
T PLN00113        318 ----------NNFTGKIPVALT-SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI  386 (968)
T ss_pred             ----------CccCCcCChhHh-cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEE
Confidence                      333334443333 367888899999999989999999999999999999999999999999999999999


Q ss_pred             CCCCcccccCCcCCCCCCCCCEEECcCCccccccccccccCCCCCEEEccCCcCcccccHHHHhcCCCCcEEEccCCccc
Q 002574          662 ISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLS  741 (906)
Q Consensus       662 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~l~  741 (906)
                      +++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+.. +++|+.|++++|++.
T Consensus       387 l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~n~~~  465 (968)
T PLN00113        387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD-MPSLQMLSLARNKFF  465 (968)
T ss_pred             CcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhcc-CCCCcEEECcCceee
Confidence            9999999999999999999999999999999999999999999999999999999999987775 999999999999999


Q ss_pred             cccCccccCCCCCCEEeCCCCcCCCCCCcccccccccccCCCccchheeeeeeecCCCcccccccCcccEEEcCCCcccc
Q 002574          742 GDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTG  821 (906)
Q Consensus       742 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~  821 (906)
                      +.+|..+ ..++|+.||+++|++++.+|..+.++++|                               +.|+|++|++++
T Consensus       466 ~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L-------------------------------~~L~Ls~N~l~~  513 (968)
T PLN00113        466 GGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL-------------------------------MQLKLSENKLSG  513 (968)
T ss_pred             eecCccc-ccccceEEECcCCccCCccChhhhhhhcc-------------------------------CEEECcCCccee
Confidence            9988765 46899999999999999999998888887                               799999999999


Q ss_pred             cCChhhhccCCCCEEeCcCCcccccccccccCCCCCCeEeCcCCcccccCCCC----CCCCCCCccCCCCCCCCC
Q 002574          822 QIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSL----PNFNDPSIYEGNPLLCGA  892 (906)
Q Consensus       822 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~----~~~~~~~~~~gn~~lc~~  892 (906)
                      .+|+.++++++|++|+|++|.+++.+|..+..+++|+.|++++|+++|.+|..    ..+.... +.+|+..+..
T Consensus       514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~-ls~N~l~~~~  587 (968)
T PLN00113        514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN-ISHNHLHGSL  587 (968)
T ss_pred             eCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEe-ccCCcceeeC
Confidence            99999999999999999999999999999999999999999999999999976    2333334 6677766533

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=9e-39  Score=320.18  Aligned_cols=483  Identities=27%  Similarity=0.375  Sum_probs=278.5

Q ss_pred             CCCEEeCCCCCCCCCCCChhhhcCCCCCeeeccCCcCccCCCcCcCCCCCCcEEEccCCCCCCCcCCccccccchhhhcC
Q 002574          130 YLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSG  209 (906)
Q Consensus       130 ~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~l~~  209 (906)
                      -|+.|++++|.+..  +-+.+.++..|.+|++++|+++ .+|++++.+.+++.|++++|++...|..          +..
T Consensus        46 ~l~~lils~N~l~~--l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~lp~~----------i~s  112 (565)
T KOG0472|consen   46 DLQKLILSHNDLEV--LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSELPEQ----------IGS  112 (565)
T ss_pred             chhhhhhccCchhh--ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhccHH----------Hhh
Confidence            35555666666552  3444556666666666666665 5566666666666666666655444321          344


Q ss_pred             CCCCcEEECCCccCCCCCcchHHHhcCCCCCcEEEccCCcCCCCCCccCcCCCCcccEEECCCCcCCCCChhhhhcCCCC
Q 002574          210 LSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSL  289 (906)
Q Consensus       210 l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L  289 (906)
                      +.+|++++.++|.+...++    .++.+..|+.++..+|+++..|.  .+.++.++..+++.+|++....|..+ +++.|
T Consensus       113 ~~~l~~l~~s~n~~~el~~----~i~~~~~l~dl~~~~N~i~slp~--~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L  185 (565)
T KOG0472|consen  113 LISLVKLDCSSNELKELPD----SIGRLLDLEDLDATNNQISSLPE--DMVNLSKLSKLDLEGNKLKALPENHI-AMKRL  185 (565)
T ss_pred             hhhhhhhhccccceeecCc----hHHHHhhhhhhhccccccccCch--HHHHHHHHHHhhccccchhhCCHHHH-HHHHH
Confidence            4555555555555554432    44555666667777777776664  36667777777777777765444433 37777


Q ss_pred             CEEEeecccccccCchhhcCCCCCCeEeCCCCCCCCCCcchhhhcCCCCCEEEccCCcCCcccccccccCCCCCCCccEE
Q 002574          290 TKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYL  369 (906)
Q Consensus       290 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L  369 (906)
                      ++|+...|.+. .+|+.++.+.+|+.|++..| ++. .+| .|.+|..|++|.++.|.+...+.+....+.    ++..|
T Consensus       186 ~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~N-ki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~----~l~vL  257 (565)
T KOG0472|consen  186 KHLDCNSNLLE-TLPPELGGLESLELLYLRRN-KIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLN----SLLVL  257 (565)
T ss_pred             Hhcccchhhhh-cCChhhcchhhhHHHHhhhc-ccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccc----cceee
Confidence            77777777654 66777777777777777777 553 334 677777777777777777655555554554    77777


Q ss_pred             ECcCCCCCCccchhccCCCCCceeeccCccccCCCCccCCCCCCCCEEeCcCccCCcccccchhccccCceeecCCCCcc
Q 002574          370 DLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWE  449 (906)
Q Consensus       370 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  449 (906)
                      |+..|+++ +.|+.+..+++|++||+++|.++ .+|..++++ +|+.|.+.+|++.. +...+-+...=+          
T Consensus       258 DLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~----------  323 (565)
T KOG0472|consen  258 DLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQE----------  323 (565)
T ss_pred             eccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHH----------
Confidence            77777777 67777777777777777777776 455567777 77777777776652 222221111000          


Q ss_pred             CCCChHHhhcccc-ccEeecCCCCCcceeeeccCCCcCCCCccEEEeecccCCCCCChhcccCCcccEEEccCCCccCCC
Q 002574          450 GILQESQFMNLKR-LESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTI  528 (906)
Q Consensus       450 ~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  528 (906)
                            .+..+.+ .+.=.++.-                            -++..                   -.++.
T Consensus       324 ------vLKyLrs~~~~dglS~s----------------------------e~~~e-------------------~~~t~  350 (565)
T KOG0472|consen  324 ------VLKYLRSKIKDDGLSQS----------------------------EGGTE-------------------TAMTL  350 (565)
T ss_pred             ------HHHHHHHhhccCCCCCC----------------------------ccccc-------------------ccCCC
Confidence                  0110000 000000000                            00000                   00000


Q ss_pred             ChhhhhhcCCCccEEEccCCcccCCCCCCCCCCCccEEeccCccCcccCCCCcccccccccccccCCCCCCchhhccccc
Q 002574          529 PGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPR  608 (906)
Q Consensus       529 p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~  608 (906)
                      |.                     +.+|....                     ..+.+.|++++-+++ .+|+.+|..- +
T Consensus       351 ~~---------------------~~~~~~~~---------------------~i~tkiL~~s~~qlt-~VPdEVfea~-~  386 (565)
T KOG0472|consen  351 PS---------------------ESFPDIYA---------------------IITTKILDVSDKQLT-LVPDEVFEAA-K  386 (565)
T ss_pred             CC---------------------Ccccchhh---------------------hhhhhhhcccccccc-cCCHHHHHHh-h
Confidence            00                     01111111                     123344444444444 6777766511 0


Q ss_pred             ceeeccccccccccCCCCCCCCCCCcEEEccCCcCcccCCCCccCCCCccE-EeCCCCcccccCCcCCCCCCCCCEEECc
Q 002574          609 LQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWG-IDISNNSLTGSIPSSFGSLRSLSVLLLS  687 (906)
Q Consensus       609 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~-L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  687 (906)
                                           -.-....+++.|++. .+|..+..+..+.+ +.+++|.+ +.+|..++.+++|+.|+++
T Consensus       387 ---------------------~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~  443 (565)
T KOG0472|consen  387 ---------------------SEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLS  443 (565)
T ss_pred             ---------------------hcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecc
Confidence                                 011234444445444 34444433333333 23333333 3556667777777777777


Q ss_pred             CCccccccccccccCCCCCEEEccCCcCcccccHHHHhcCCCCcEEEccCCccccccCccccCCCCCCEEeCCCCcCCCC
Q 002574          688 NNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGA  767 (906)
Q Consensus       688 ~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  767 (906)
                      +|-+. .+|..++.+..|+.|+++.|+|. .+|..+-. +..++.+-.++|++....|..+.++++|.+|||.+|.+. .
T Consensus       444 NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~-lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~  519 (565)
T KOG0472|consen  444 NNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYE-LQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-Q  519 (565)
T ss_pred             cchhh-hcchhhhhhhhhheecccccccc-cchHHHhh-HHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-h
Confidence            77666 67777777777888888888777 77777665 666666666777777666666788888888888888876 7


Q ss_pred             CCccccccccc
Q 002574          768 IPRCIGNLSAL  778 (906)
Q Consensus       768 ip~~~~~l~~L  778 (906)
                      ||+.+++++++
T Consensus       520 IPp~LgnmtnL  530 (565)
T KOG0472|consen  520 IPPILGNMTNL  530 (565)
T ss_pred             CChhhccccce
Confidence            78788887777

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-35  Score=308.79  Aligned_cols=370  Identities=25%  Similarity=0.275  Sum_probs=251.2

Q ss_pred             cccEEECCCCcCCCCChhhhhcCCCCCEEEeecccccccCchhhcCCCCCCeEeCCCCCCCCCCcchhhhcCCCCCEEEc
Q 002574          264 SISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDL  343 (906)
Q Consensus       264 ~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L  343 (906)
                      .-+.||+++|++...-+..|.++++|+++++.+|.++ .+|...+...+|+.|+|.+| .+...-.+.+..++.|+.|||
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDL  156 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhh
Confidence            3456888888888777788888888888888888877 56665555666888888888 777777777777778888888


Q ss_pred             cCCcCCcccccccccCCCCCCCccEEECcCCCCCCccchhccCCCCCceeeccCccccCCCCccCCCCCCCCEEeCcCcc
Q 002574          344 SANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNG  423 (906)
Q Consensus       344 s~n~l~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  423 (906)
                      +.|.++.+....|..-.    ++++|+|++|.|+..-...|..+.+|.+|.|+.|+++...+..|.++++|+.|+|..|+
T Consensus       157 SrN~is~i~~~sfp~~~----ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~  232 (873)
T KOG4194|consen  157 SRNLISEIPKPSFPAKV----NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR  232 (873)
T ss_pred             hhchhhcccCCCCCCCC----CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence            88877766555554433    67777777777775555566666666666666666665555566666666666666666


Q ss_pred             CCcccccchhccccCceeecCCCCccCCCChHHhhccccccEeecCCCCCcceeeeccCCCcCCCCccEEEeecccCCCC
Q 002574          424 MNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPS  503 (906)
Q Consensus       424 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  503 (906)
                      |...---.|.++++|+.|.+..|.+...-+. .|-.                                            
T Consensus       233 irive~ltFqgL~Sl~nlklqrN~I~kL~DG-~Fy~--------------------------------------------  267 (873)
T KOG4194|consen  233 IRIVEGLTFQGLPSLQNLKLQRNDISKLDDG-AFYG--------------------------------------------  267 (873)
T ss_pred             eeeehhhhhcCchhhhhhhhhhcCcccccCc-ceee--------------------------------------------
Confidence            6422122344444444444444433321111 1111                                            


Q ss_pred             CChhcccCCcccEEEccCCCccCCCChhhhhhcCCCccEEEccCCcccCCCCCCCCCCCccEEeccCccCcccCCCCccc
Q 002574          504 FPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTN  583 (906)
Q Consensus       504 ~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~  583 (906)
                                                       +.++++|+++.|++..                               
T Consensus       268 ---------------------------------l~kme~l~L~~N~l~~-------------------------------  283 (873)
T KOG4194|consen  268 ---------------------------------LEKMEHLNLETNRLQA-------------------------------  283 (873)
T ss_pred             ---------------------------------ecccceeecccchhhh-------------------------------
Confidence                                             1233344444333331                               


Q ss_pred             ccccccccccCCCCCCchhhcccccceeeccccccccccCCCCCCCCCCCcEEEccCCcCcccCCCCccCCCCccEEeCC
Q 002574          584 ADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDIS  663 (906)
Q Consensus       584 L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls  663 (906)
                                    +...+.-.+..|+.|++|.|.|..+.+.++..+++|++|+|++|+++..-+..|..+..|++|+|+
T Consensus       284 --------------vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs  349 (873)
T KOG4194|consen  284 --------------VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLS  349 (873)
T ss_pred             --------------hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccc
Confidence                          111111124556666666666666666677778888888888888887777778888888888888


Q ss_pred             CCcccccCCcCCCCCCCCCEEECcCCcccccccc---ccccCCCCCEEEccCCcCcccccHHHHhcCCCCcEEEccCCcc
Q 002574          664 NNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPC---SLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLL  740 (906)
Q Consensus       664 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~---~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~l  740 (906)
                      +|.+...-..+|..+++|+.|||++|.++..+.+   .|.++++|+.|++.+|+++ .||...+.++..|++|+|.+|.+
T Consensus       350 ~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~Nai  428 (873)
T KOG4194|consen  350 HNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAI  428 (873)
T ss_pred             ccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcc
Confidence            8888877777888888888888888888766543   3777888888888888888 88888888888888888888888


Q ss_pred             ccccCccccCCCCCCEEeCCCCcC
Q 002574          741 SGDIPQRLCNLQNLHIIDLSHNNF  764 (906)
Q Consensus       741 ~~~~p~~l~~l~~L~~L~Ls~N~l  764 (906)
                      ...-|.+|..+ .|+.|.+..-.|
T Consensus       429 aSIq~nAFe~m-~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  429 ASIQPNAFEPM-ELKELVMNSSSF  451 (873)
T ss_pred             eeecccccccc-hhhhhhhcccce
Confidence            88888888888 788777655433

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-35  Score=307.04  Aligned_cols=392  Identities=26%  Similarity=0.262  Sum_probs=294.2

Q ss_pred             EEEccCCcCCcccccccccCCCCCCCccEEECcCCCCCCccchhccCCCCCceeeccCccccCCCCccCCCCCCCCEEeC
Q 002574          340 SLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDL  419 (906)
Q Consensus       340 ~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  419 (906)
                      .||.+++.+.......+.++.  ++.-+.|++++|++...-+..|.++++|+++++.+|.++ .+|..-....+|+.|+|
T Consensus        56 lldcs~~~lea~~~~~l~g~l--p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L  132 (873)
T KOG4194|consen   56 LLDCSDRELEAIDKSRLKGFL--PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL  132 (873)
T ss_pred             eeecCccccccccccccCCcC--ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence            455555555433222222221  225567888888888777777788888888888888877 66664445556888888


Q ss_pred             cCccCCcccccchhccccCceeecCCCCccCCCChHHhhccccccEeecCCCCCcceeeeccCCCcCCCCccEEEeeccc
Q 002574          420 SYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQ  499 (906)
Q Consensus       420 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~  499 (906)
                      .+|.|+..-.+++..++.|+.||++.|.++.+... .|..-.+                                     
T Consensus       133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~-sfp~~~n-------------------------------------  174 (873)
T KOG4194|consen  133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKP-SFPAKVN-------------------------------------  174 (873)
T ss_pred             eccccccccHHHHHhHhhhhhhhhhhchhhcccCC-CCCCCCC-------------------------------------
Confidence            88888776677777778888888888777654222 2322222                                     


Q ss_pred             CCCCCChhcccCCcccEEEccCCCccCCCChhhhhhcCCCccEEEccCCcccCCCCCCCCC-CCccEEeccCccCcccCC
Q 002574          500 VGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNS-PNLRSIDLSSNHFEGTLP  578 (906)
Q Consensus       500 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~-~~L~~L~ls~n~l~~~~~  578 (906)
                                                              +++|++++|.|+..-...+.. .+|..|.+++|+++    
T Consensus       175 ----------------------------------------i~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit----  210 (873)
T KOG4194|consen  175 ----------------------------------------IKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT----  210 (873)
T ss_pred             ----------------------------------------ceEEeeccccccccccccccccchheeeecccCccc----
Confidence                                                    333333333333222211111 13333333333333    


Q ss_pred             CCcccccccccccccCCCCCCchhhcccccceeeccccccccccCCCCCCCCCCCcEEEccCCcCcccCCCCccCCCCcc
Q 002574          579 LWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFW  658 (906)
Q Consensus       579 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~  658 (906)
                                        .+|...|+.+++|+.|++..|+|.-..-..|.++++|+.|.+..|.+...-...|..+.+++
T Consensus       211 ------------------tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme  272 (873)
T KOG4194|consen  211 ------------------TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKME  272 (873)
T ss_pred             ------------------ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccc
Confidence                              67777788888899999999988755567889999999999999999988888899999999


Q ss_pred             EEeCCCCcccccCCcCCCCCCCCCEEECcCCccccccccccccCCCCCEEEccCCcCcccccHHHHhcCCCCcEEEccCC
Q 002574          659 GIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSN  738 (906)
Q Consensus       659 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N  738 (906)
                      .|+|+.|++...-.+++-+++.|+.|++|+|.|...-++++.-+++|++|+|++|+++ .++..-+..+..|++|+|++|
T Consensus       273 ~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~N  351 (873)
T KOG4194|consen  273 HLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHN  351 (873)
T ss_pred             eeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhccccc
Confidence            9999999999888889999999999999999999888999999999999999999999 666666666999999999999


Q ss_pred             ccccccCccccCCCCCCEEeCCCCcCCCCCCcccccccccccCCCccchheeeeeeecCCCcccccccCcccEEEcCCCc
Q 002574          739 LLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNN  818 (906)
Q Consensus       739 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~  818 (906)
                      ++...-...|..+++|+.|||++|.+++.|...-.-                            +..++.|+.|+|.+|+
T Consensus       352 si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~----------------------------f~gl~~LrkL~l~gNq  403 (873)
T KOG4194|consen  352 SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA----------------------------FNGLPSLRKLRLTGNQ  403 (873)
T ss_pred             chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh----------------------------hccchhhhheeecCce
Confidence            998776778899999999999999998777643111                            1224555899999999


Q ss_pred             ccccCChhhhccCCCCEEeCcCCcccccccccccCCCCCCeEeCcC
Q 002574          819 LTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSF  864 (906)
Q Consensus       819 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~  864 (906)
                      +..+.-.+|..+..|+.|||.+|.|..+-|.+|..+ .|+.|-+..
T Consensus       404 lk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  404 LKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             eeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            996555799999999999999999999999999998 888887764

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.6e-38  Score=316.90  Aligned_cols=494  Identities=25%  Similarity=0.355  Sum_probs=302.7

Q ss_pred             CCcEEEccCCcCCCCCCccCcCCCCcccEEECCCCcCCCCChhhhhcCCCCCEEEeecccccccCchhhcCCCCCCeEeC
Q 002574          239 SLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDL  318 (906)
Q Consensus       239 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L  318 (906)
                      .|+.+.+++|.+....+  .+.++..+.++++.+|++. ..|++++.+..++.++.++|++. .+|+.++.+.+|+.++.
T Consensus        46 ~l~~lils~N~l~~l~~--dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVLRE--DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC  121 (565)
T ss_pred             chhhhhhccCchhhccH--hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence            45566666666655543  2566777777777777765 45666777777777777777776 56677777777777777


Q ss_pred             CCCCCCCCCcchhhhcCCCCCEEEccCCcCCcccccccccCCCCCCCccEEECcCCCCCCccchhccCCCCCceeeccCc
Q 002574          319 SNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGN  398 (906)
Q Consensus       319 ~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  398 (906)
                      ++| .+. ..++.++.+-.|+.++..+|+++..+++ +..+.    +|..+++.+|+++ ..|+..-+++.|++|+...|
T Consensus       122 s~n-~~~-el~~~i~~~~~l~dl~~~~N~i~slp~~-~~~~~----~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N  193 (565)
T KOG0472|consen  122 SSN-ELK-ELPDSIGRLLDLEDLDATNNQISSLPED-MVNLS----KLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSN  193 (565)
T ss_pred             ccc-cee-ecCchHHHHhhhhhhhccccccccCchH-HHHHH----HHHHhhccccchh-hCCHHHHHHHHHHhcccchh
Confidence            777 443 4455666777777777777777654433 33333    6777777777777 34444444777777777777


Q ss_pred             cccCCCCccCCCCCCCCEEeCcCccCCcccccchhccccCceeecCCCCccCCCChHHhhccccccEeecCCCCCcceee
Q 002574          399 SFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVF  478 (906)
Q Consensus       399 ~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  478 (906)
                      .+. .+|..++.+.+|.-|++..|++. ..| .|+++..|+++++..|++.- +|++...++.++..||+..|+.+.+  
T Consensus       194 ~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~l~vLDLRdNklke~--  267 (565)
T KOG0472|consen  194 LLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEM-LPAEHLKHLNSLLVLDLRDNKLKEV--  267 (565)
T ss_pred             hhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHh-hHHHHhcccccceeeeccccccccC--
Confidence            665 56666777777777777777776 455 67777777777777776653 3444566666666666666633322  


Q ss_pred             eccCCCcCCCCccEEEeecccCCCCCChhcccCCcccEEEccCCCccCCCChhhhhhcCCCccEEEccCCcccCCCCCCC
Q 002574          479 NVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQM  558 (906)
Q Consensus       479 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~  558 (906)
                                                                        |+...  ...+|++||+++|.+++..+.. 
T Consensus       268 --------------------------------------------------Pde~c--lLrsL~rLDlSNN~is~Lp~sL-  294 (565)
T KOG0472|consen  268 --------------------------------------------------PDEIC--LLRSLERLDLSNNDISSLPYSL-  294 (565)
T ss_pred             --------------------------------------------------chHHH--HhhhhhhhcccCCccccCCccc-
Confidence                                                              22111  2356788888888888544444 


Q ss_pred             CCCCccEEeccCccCcccCCC----C-cccccccccccccCCCCCCchhhcccccceeeccccccccccCCCCCCCCCCC
Q 002574          559 NSPNLRSIDLSSNHFEGTLPL----W-STNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDL  633 (906)
Q Consensus       559 ~~~~L~~L~ls~n~l~~~~~~----~-~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L  633 (906)
                      +...|+.|.+.+|++...--.    . ..-|++|.=   ++...-+..-       +.=..+.-..............+.
T Consensus       295 gnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs---~~~~dglS~s-------e~~~e~~~t~~~~~~~~~~~~i~t  364 (565)
T KOG0472|consen  295 GNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRS---KIKDDGLSQS-------EGGTETAMTLPSESFPDIYAIITT  364 (565)
T ss_pred             ccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHH---hhccCCCCCC-------cccccccCCCCCCcccchhhhhhh
Confidence            334888888888876421000    0 001111110   0000000000       000000000000000111223344


Q ss_pred             cEEEccCCcCcccCCCCccCCCCccEEeCCCCcccccCCcCCCCCCCCCEEECcCCccccccccccccCCCCCE-EEccC
Q 002574          634 QILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTS-IDLGG  712 (906)
Q Consensus       634 ~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~-L~L~~  712 (906)
                      +.|++++-+++ .+|+..+...                     .-.-.+..+++.|++. .+|..+..++.+.+ +.+++
T Consensus       365 kiL~~s~~qlt-~VPdEVfea~---------------------~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsn  421 (565)
T KOG0472|consen  365 KILDVSDKQLT-LVPDEVFEAA---------------------KSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSN  421 (565)
T ss_pred             hhhcccccccc-cCCHHHHHHh---------------------hhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhc
Confidence            55555555554 3332221111                     1112455666666666 55655555544433 34444


Q ss_pred             CcCcccccHHHHhcCCCCcEEEccCCccccccCccccCCCCCCEEeCCCCcCCCCCCcccccccccccCCCccchheeee
Q 002574          713 NQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIW  792 (906)
Q Consensus       713 N~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~~~~~~~~~~~~~  792 (906)
                      |.+ +.+|..+.. +++|..|+|++|.+. .+|.+++.+..|+.||+|+|+|. .+|.++..+..+              
T Consensus       422 n~i-sfv~~~l~~-l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~l--------------  483 (565)
T KOG0472|consen  422 NKI-SFVPLELSQ-LQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTL--------------  483 (565)
T ss_pred             Ccc-ccchHHHHh-hhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHH--------------
Confidence            444 366666655 777777777777666 67778888888999999999887 888887776666              


Q ss_pred             eeecCCCcccccccCcccEEEcCCCcccccCChhhhccCCCCEEeCcCCcccccccccccCCCCCCeEeCcCCcccccCC
Q 002574          793 RVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIP  872 (906)
Q Consensus       793 ~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP  872 (906)
                                       +.+-.++|++....|+.+.+|.+|..|||.+|.+. .||..++++++|+.|++.+|++.  .|
T Consensus       484 -----------------Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~P  543 (565)
T KOG0472|consen  484 -----------------ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QP  543 (565)
T ss_pred             -----------------HHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CC
Confidence                             55666778998776777999999999999999998 68999999999999999999997  55


Q ss_pred             CC
Q 002574          873 SL  874 (906)
Q Consensus       873 ~~  874 (906)
                      ..
T Consensus       544 r~  545 (565)
T KOG0472|consen  544 RH  545 (565)
T ss_pred             HH
Confidence            44

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=1.8e-34  Score=318.43  Aligned_cols=487  Identities=28%  Similarity=0.381  Sum_probs=305.9

Q ss_pred             CcEEEccCCcCCCCCCccCcCCCCcccEEECCCCcCCCCChhhhhcCCCCCEEEeecccccccCchhhcCCCCCCeEeCC
Q 002574          240 LVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLS  319 (906)
Q Consensus       240 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~  319 (906)
                      ++.|++..|.+-..|. ..+.+.-+|+.||+++|++. ..|..+..+.+|+.|+++.|.+. ..|.+..++.+|+++.|.
T Consensus        23 ~~~ln~~~N~~l~~pl-~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~   99 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPL-EFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK   99 (1081)
T ss_pred             HHhhhccccccccCch-HHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence            5555555554444332 12222333555555555543 34555555555555555555554 334445555555555555


Q ss_pred             CCCCCCCCcchhhhcCCCCCEEEccCCcCCcccccccccCCCCCCCccEEECcCCCCCCccchhccCCCCCceeeccCcc
Q 002574          320 NNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNS  399 (906)
Q Consensus       320 ~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  399 (906)
                      +| .+ ...|..+..+++|+.|+++.|                            .+. .+|..+..++.++.+..++|.
T Consensus       100 ~n-~l-~~lP~~~~~lknl~~LdlS~N----------------------------~f~-~~Pl~i~~lt~~~~~~~s~N~  148 (1081)
T KOG0618|consen  100 NN-RL-QSLPASISELKNLQYLDLSFN----------------------------HFG-PIPLVIEVLTAEEELAASNNE  148 (1081)
T ss_pred             cc-hh-hcCchhHHhhhcccccccchh----------------------------ccC-CCchhHHhhhHHHHHhhhcch
Confidence            54 22 234444555555555555544                            444 444445555555555555552


Q ss_pred             ccCCCCccCCCCCCCCEEeCcCccCCcccccchhccccCceeecCCCCccCCCChHHhhccccccEeecCCCCCcceeee
Q 002574          400 FWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFN  479 (906)
Q Consensus       400 l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  479 (906)
                      ....    ++... ++.+++..|.+.+.++..+..++.  .+++.+|.+. +.   ...++.+|+.+.+..|....+   
T Consensus       149 ~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~---dls~~~~l~~l~c~rn~ls~l---  214 (1081)
T KOG0618|consen  149 KIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VL---DLSNLANLEVLHCERNQLSEL---  214 (1081)
T ss_pred             hhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-hh---hhhhccchhhhhhhhcccceE---
Confidence            2111    22221 556666666666666665555555  5666666655 11   455666666666666532222   


Q ss_pred             ccCCCcCCCCccEEEeecccCCCCCChhcccCCcccEEEccCCCccCCCChhhhhhcCCCccEEEccCCcccCCCCCCCC
Q 002574          480 VSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMN  559 (906)
Q Consensus       480 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~  559 (906)
                                    .+.+                                        .+++.|+.++|.++.. .....
T Consensus       215 --------------~~~g----------------------------------------~~l~~L~a~~n~l~~~-~~~p~  239 (1081)
T KOG0618|consen  215 --------------EISG----------------------------------------PSLTALYADHNPLTTL-DVHPV  239 (1081)
T ss_pred             --------------EecC----------------------------------------cchheeeeccCcceee-ccccc
Confidence                          2211                                        2344455555544411 11122


Q ss_pred             CCCccEEeccCccCcccCCCC---cccccccccccccCCCCCCchhhcccccceeeccccccccccCCCCCCCCCCCcEE
Q 002574          560 SPNLRSIDLSSNHFEGTLPLW---STNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQIL  636 (906)
Q Consensus       560 ~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L  636 (906)
                      ..+|+++++++|++++.. .|   +.+++.+...+|.+. .+|..++. ..+|+.|.+..|.+. .+|......+.|+.|
T Consensus       240 p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~-~~~L~~l~~~~nel~-yip~~le~~~sL~tL  315 (1081)
T KOG0618|consen  240 PLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISR-ITSLVSLSAAYNELE-YIPPFLEGLKSLRTL  315 (1081)
T ss_pred             cccceeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhh-hhhHHHHHhhhhhhh-hCCCcccccceeeee
Confidence            225556666666555433 43   556666666666664 66666655 567888888888887 456667778899999


Q ss_pred             EccCCcCcccCCCC-ccCCCC-ccEEeCCCCcccccCCcCCCCCCCCCEEECcCCccccccccccccCCCCCEEEccCCc
Q 002574          637 SIRSNKLSGEFPNC-WYHSQM-FWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQ  714 (906)
Q Consensus       637 ~Ls~n~l~~~~p~~-l~~~~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~  714 (906)
                      +|..|++. .+|+. +.-... +..|+.+.|++.......-..++.|+.|++.+|.++...-..+.+...|+.|+|++|+
T Consensus       316 dL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr  394 (1081)
T KOG0618|consen  316 DLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR  394 (1081)
T ss_pred             eehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence            99999987 44443 333333 6777788887764432222346778899999999998877788999999999999999


Q ss_pred             CcccccHHHHhcCCCCcEEEccCCccccccCccccCCCCCCEEeCCCCcCCCCCCcccccccccccCCCccchheeeeee
Q 002574          715 LSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRV  794 (906)
Q Consensus       715 l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~~~~~~~~~~~~~~~  794 (906)
                      +. ++|+....++..|++|+|+||+++ .+|..+..+..|++|...+|.+. ..| .+.++++|                
T Consensus       395 L~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL----------------  454 (1081)
T KOG0618|consen  395 LN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQL----------------  454 (1081)
T ss_pred             cc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcc----------------
Confidence            97 899888888999999999999998 67888999999999999999987 666 66666666                


Q ss_pred             ecCCCcccccccCcccEEEcCCCcccccC-ChhhhccCCCCEEeCcCCcccccccccccCCCCCCeEeCcCCcccccCCC
Q 002574          795 VKGRNPEYSNIIADVNSIDLSWNNLTGQI-PDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPS  873 (906)
Q Consensus       795 ~~~~~~~~~~~~~~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~  873 (906)
                                     +.+|+|.|+|+... |.... -++|++|||++|.-....-..|..+.++..+++.-|    .+|+
T Consensus       455 ---------------~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~----~~~d  514 (1081)
T KOG0618|consen  455 ---------------KVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN----NTPD  514 (1081)
T ss_pred             ---------------eEEecccchhhhhhhhhhCC-CcccceeeccCCcccccchhhhHHhhhhhheecccC----CCCc
Confidence                           88999999998543 43332 389999999999865555667777788888887766    5565


Q ss_pred             C
Q 002574          874 L  874 (906)
Q Consensus       874 ~  874 (906)
                      +
T Consensus       515 ~  515 (1081)
T KOG0618|consen  515 G  515 (1081)
T ss_pred             c
Confidence            5

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=6.2e-34  Score=314.14  Aligned_cols=416  Identities=27%  Similarity=0.340  Sum_probs=300.2

Q ss_pred             CccEEECcCCCCCCccchhccCCCCCceeeccCccccCCCCccCCCCCCCCEEeCcCccCCcccccchhccccCceeecC
Q 002574          365 NLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLL  444 (906)
Q Consensus       365 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~  444 (906)
                      +|+.|+++.|.+. ..|....++.+|+++.|.+|.+. ..|..+..+.+|+.||++.|.+. .+|..+..++.+..+..+
T Consensus        69 ~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s  145 (1081)
T KOG0618|consen   69 HLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAAS  145 (1081)
T ss_pred             HHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhh
Confidence            5555555555555 45555666666666666666655 56666666666666666666665 566666666666666666


Q ss_pred             CCCccCCCChHHhhccccccEeecCCCCCcceeeeccCCCcCCCCccEEEeecccCCCCCChhcccCCcccEEEccCCCc
Q 002574          445 QNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGI  524 (906)
Q Consensus       445 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  524 (906)
                      +|......     +..                            .++.+++..+.+.+.++..+..+++  .+++.+|.+
T Consensus       146 ~N~~~~~l-----g~~----------------------------~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~  190 (1081)
T KOG0618|consen  146 NNEKIQRL-----GQT----------------------------SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEM  190 (1081)
T ss_pred             cchhhhhh-----ccc----------------------------cchhhhhhhhhcccchhcchhhhhe--eeecccchh
Confidence            66211111     111                            1233334444555555555555555  577777766


Q ss_pred             cCCCChhhhhhcCCCccEEEccCCcccCCCCCCCCCCCccEEeccCccCcccCCCC-cccccccccccccCCCCCCchhh
Q 002574          525 SDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLW-STNADELFLQDNRFSGPLPENIG  603 (906)
Q Consensus       525 ~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~p~~~~  603 (906)
                      . ..    -...+.+|+.+....|++...   ....++++.|+.++|.++...+.. +.+++++++++|+++ .+| .+.
T Consensus       191 ~-~~----dls~~~~l~~l~c~rn~ls~l---~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp-~wi  260 (1081)
T KOG0618|consen  191 E-VL----DLSNLANLEVLHCERNQLSEL---EISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLP-EWI  260 (1081)
T ss_pred             h-hh----hhhhccchhhhhhhhcccceE---EecCcchheeeeccCcceeeccccccccceeeecchhhhh-cch-HHH
Confidence            5 11    112356788888888877632   233468999999999999666654 679999999999998 677 444


Q ss_pred             cccccceeeccccccccccCCCCCCCCCCCcEEEccCCcCcccCCCCccCCCCccEEeCCCCcccccCCcCCCCCCC-CC
Q 002574          604 SLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRS-LS  682 (906)
Q Consensus       604 ~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~  682 (906)
                      ..+.+|+.+...+|+++ .+|..+....+|+.|.+.+|.+. -+|......+.|+.|+|..|++....+..+..... |+
T Consensus       261 ~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~  338 (1081)
T KOG0618|consen  261 GACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLN  338 (1081)
T ss_pred             HhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHH
Confidence            45899999999999995 67788888999999999999998 67777888999999999999998554444444443 77


Q ss_pred             EEECcCCccccccccccccCCCCCEEEccCCcCcccccHHHHhcCCCCcEEEccCCccccccCccccCCCCCCEEeCCCC
Q 002574          683 VLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHN  762 (906)
Q Consensus       683 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  762 (906)
                      .|..+.|++.......=...+.|+.|.+.+|.+++..-.-+- +...|++|+|++|++.......+.+++.|+.|+||+|
T Consensus       339 ~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN  417 (1081)
T KOG0618|consen  339 TLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN  417 (1081)
T ss_pred             HHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc-cccceeeeeecccccccCCHHHHhchHHhHHHhcccc
Confidence            788888888743322223456789999999999876544443 4899999999999998655567889999999999999


Q ss_pred             cCCCCCCcccccccccccCCCccchheeeeeeecCCCcccccccCcccEEEcCCCcccccCChhhhccCCCCEEeCcCCc
Q 002574          763 NFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQ  842 (906)
Q Consensus       763 ~l~~~ip~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~  842 (906)
                      +++ .+|.++.++..|                               ++|...+|++. ..| ++.++++|+.+|+|.|+
T Consensus       418 kL~-~Lp~tva~~~~L-------------------------------~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~  463 (1081)
T KOG0618|consen  418 KLT-TLPDTVANLGRL-------------------------------HTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNN  463 (1081)
T ss_pred             hhh-hhhHHHHhhhhh-------------------------------HHHhhcCCcee-ech-hhhhcCcceEEecccch
Confidence            998 888988888888                               78999999998 677 79999999999999999


Q ss_pred             cccc-ccccccCCCCCCeEeCcCCc
Q 002574          843 LSGA-IPQSLSSLASLSKLNLSFNN  866 (906)
Q Consensus       843 l~~~-ip~~l~~l~~L~~L~ls~N~  866 (906)
                      ++.. +|..... +.|++||+++|.
T Consensus       464 L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  464 LSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             hhhhhhhhhCCC-cccceeeccCCc
Confidence            9854 4444433 799999999997

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=1e-31  Score=282.79  Aligned_cols=240  Identities=25%  Similarity=0.382  Sum_probs=156.4

Q ss_pred             CCCchhhcccccceeeccccccccccCCCCCCCCCCCcEEEccCCcCc-ccCCCCccCCCCccEEeCCCCcccccCCcCC
Q 002574          597 PLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLS-GEFPNCWYHSQMFWGIDISNNSLTGSIPSSF  675 (906)
Q Consensus       597 ~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~  675 (906)
                      .+|..+.. +..|++|++++|.+.-..-..+..+++|++|.+++.+-+ ..+|.++..+.+|..+|+|.|.+. .+|+.+
T Consensus       164 ~LPPQ~RR-L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecl  241 (1255)
T KOG0444|consen  164 MLPPQIRR-LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECL  241 (1255)
T ss_pred             hcCHHHHH-HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHH
Confidence            44444433 556777778887765333344455667777777776544 346777777777777777777776 667777


Q ss_pred             CCCCCCCEEECcCCccccccccccccCCCCCEEEccCCcCcccccHHHHhcCCCCcEEEccCCcccc-ccCccccCCCCC
Q 002574          676 GSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSG-DIPQRLCNLQNL  754 (906)
Q Consensus       676 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L  754 (906)
                      -++++|+.|+||+|+|+ .+....+...+|++|+++.|+++ .+|..+-. ++.|+.|.+.+|+++- -||..|+.+.+|
T Consensus       242 y~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK-L~kL~kLy~n~NkL~FeGiPSGIGKL~~L  318 (1255)
T KOG0444|consen  242 YKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK-LTKLTKLYANNNKLTFEGIPSGIGKLIQL  318 (1255)
T ss_pred             hhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhh-hHHHHHHHhccCcccccCCccchhhhhhh
Confidence            77777777777777776 33334455567777777777777 77777665 7777777777777653 367777777777


Q ss_pred             CEEeCCCCcCCCCCCcccccccccccCCCccchheeeeeeecCCCcccccccCcccEEEcCCCcccccCChhhhccCCCC
Q 002574          755 HIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALH  834 (906)
Q Consensus       755 ~~L~Ls~N~l~~~ip~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~  834 (906)
                      +++..++|.+. ..|+.+..+..|                               +.|.|+.|++- .+|+++.-|+.|+
T Consensus       319 evf~aanN~LE-lVPEglcRC~kL-------------------------------~kL~L~~NrLi-TLPeaIHlL~~l~  365 (1255)
T KOG0444|consen  319 EVFHAANNKLE-LVPEGLCRCVKL-------------------------------QKLKLDHNRLI-TLPEAIHLLPDLK  365 (1255)
T ss_pred             HHHHhhccccc-cCchhhhhhHHH-------------------------------HHhccccccee-echhhhhhcCCcc
Confidence            77777777765 667777666666                               56777777776 5677777777777


Q ss_pred             EEeCcCCcccccccccccCCCCCCeEeCcCC-----cccccCCCC
Q 002574          835 ILNLSHNQLSGAIPQSLSSLASLSKLNLSFN-----NLAGKIPSL  874 (906)
Q Consensus       835 ~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N-----~l~g~iP~~  874 (906)
                      .|||..|.-....|.-=..-++|+.-++.+-     ++.|..|..
T Consensus       366 vLDlreNpnLVMPPKP~da~~~lefYNIDFSLq~QlrlAG~~pas  410 (1255)
T KOG0444|consen  366 VLDLRENPNLVMPPKPNDARKKLEFYNIDFSLQHQLRLAGQMPAS  410 (1255)
T ss_pred             eeeccCCcCccCCCCcchhhhcceeeecceehhhHHhhccCCccc
Confidence            7777777654333322222245555554431     345555543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=3.9e-31  Score=278.31  Aligned_cols=370  Identities=28%  Similarity=0.395  Sum_probs=244.9

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCChhhhcCCCCCeeeccCCcCccCCCcCcCCCCCCcEEEccCCCCCCCcCCccccccchh
Q 002574          126 LHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLN  205 (906)
Q Consensus       126 ~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~  205 (906)
                      +-++..|-.|+++|.++|..+|..+..+++++.|.|...++. .+|+.++.|.+|++|.+++|++..+.+          
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhG----------   72 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHG----------   72 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhh----------
Confidence            446778889999999998889999999999999999999887 899999999999999998887654322          


Q ss_pred             hhcCCCCCcEEECCCccCCCCCcchHHHhcCCCCCcEEEccCCcCCCCCCccCcCCCCcccEEECCCCcCCCCChhhhhc
Q 002574          206 WLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFS  285 (906)
Q Consensus       206 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~  285 (906)
                                                 .+..++.|+.+.+..|++........+..+..|++||||+|++. ..|..+..
T Consensus        73 ---------------------------ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~  124 (1255)
T KOG0444|consen   73 ---------------------------ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEY  124 (1255)
T ss_pred             ---------------------------hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhh
Confidence                                       33344455555555554433222233566666777777777765 45666666


Q ss_pred             CCCCCEEEeecccccccCchhhcCCCCCCeEeCCCCCCCCCCcchhhhcCCCCCEEEccCCcCCcccccccccCCCCCCC
Q 002574          286 LTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNN  365 (906)
Q Consensus       286 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~  365 (906)
                      -+++-.|+|++|+|..+....|-+++.|-.|||++| .+. .+|..+..+..|++|+|++|.+.....            
T Consensus       125 AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQL------------  190 (1255)
T KOG0444|consen  125 AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQL------------  190 (1255)
T ss_pred             hcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhh-hcCHHHHHHhhhhhhhcCCChhhHHHH------------
Confidence            677777777777766433344556666666666666 443 344455556666666666655432211            


Q ss_pred             ccEEECcCCCCCCccchhccCCCCCceeeccCcccc-CCCCccCCCCCCCCEEeCcCccCCcccccchhccccCceeecC
Q 002574          366 LEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFW-GSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLL  444 (906)
Q Consensus       366 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~  444 (906)
                                      ..+..+++|+.|.+++.+-+ .-+|.++..+.+|..+|+|.|.+. .+|+.+.++++|+.|+++
T Consensus       191 ----------------rQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS  253 (1255)
T KOG0444|consen  191 ----------------RQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLS  253 (1255)
T ss_pred             ----------------hcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccC
Confidence                            12233455555556554432 346777777888888888888877 778888888888888888


Q ss_pred             CCCccCCCChHHhhccccccEeecCCCCCcceeeeccCCCcCCCCccEEEeecccCCCCCChhcccCCcccEEEccCCCc
Q 002574          445 QNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGI  524 (906)
Q Consensus       445 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  524 (906)
                      +|.++..-..  .                                                                   
T Consensus       254 ~N~iteL~~~--~-------------------------------------------------------------------  264 (1255)
T KOG0444|consen  254 GNKITELNMT--E-------------------------------------------------------------------  264 (1255)
T ss_pred             cCceeeeecc--H-------------------------------------------------------------------
Confidence            8876643100  0                                                                   


Q ss_pred             cCCCChhhhhhcCCCccEEEccCCcccCCCCCCCCCCCccEEeccCccCcccCCCCcccccccccccccCCCCCCchhhc
Q 002574          525 SDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGS  604 (906)
Q Consensus       525 ~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~  604 (906)
                                ....++++|+++.|+++                                             .+|+.+..
T Consensus       265 ----------~~W~~lEtLNlSrNQLt---------------------------------------------~LP~avcK  289 (1255)
T KOG0444|consen  265 ----------GEWENLETLNLSRNQLT---------------------------------------------VLPDAVCK  289 (1255)
T ss_pred             ----------HHHhhhhhhccccchhc---------------------------------------------cchHHHhh
Confidence                      00123455555555544                                             34444443


Q ss_pred             ccccceeecccccccc-ccCCCCCCCCCCCcEEEccCCcCcccCCCCccCCCCccEEeCCCCcccccCCcCCCCCCCCCE
Q 002574          605 LMPRLQRLYLSWNQLS-GRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSV  683 (906)
Q Consensus       605 ~~~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  683 (906)
                       +++|+.|++.+|+++ .-+|..++.+.+|+++..++|.+. .+|+.+..|..|+.|.|++|++- .+|+++.-++.|+.
T Consensus       290 -L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~v  366 (1255)
T KOG0444|consen  290 -LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKV  366 (1255)
T ss_pred             -hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcce
Confidence             455666666666554 235677777888888888877775 77888888888888888888776 56777777888888


Q ss_pred             EECcCCccc
Q 002574          684 LLLSNNNLS  692 (906)
Q Consensus       684 L~Ls~n~l~  692 (906)
                      ||+.+|.-.
T Consensus       367 LDlreNpnL  375 (1255)
T KOG0444|consen  367 LDLRENPNL  375 (1255)
T ss_pred             eeccCCcCc
Confidence            888887654

>PLN03210 Resistant to P

Probab=99.88  E-value=4.2e-21  Score=239.60  Aligned_cols=346  Identities=21%  Similarity=0.261  Sum_probs=167.4

Q ss_pred             chhhhcCCCCCEEEccCCcCC------cccccccccCCCCCCCccEEECcCCCCCCccchhccCCCCCceeeccCccccC
Q 002574          329 PKLFGILRRLKSLDLSANNLN------GEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWG  402 (906)
Q Consensus       329 ~~~l~~l~~L~~L~Ls~n~l~------~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  402 (906)
                      +..|.++++|+.|.+..+...      ...|..+..+   +++|+.|++.++.+. .+|..+ .+.+|+.|++.+|++. 
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~l---p~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-  624 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYL---PPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-  624 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhc---CcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-
Confidence            344566666666666544321      1222222222   125666666666554 455544 3455666666665554 


Q ss_pred             CCCccCCCCCCCCEEeCcCccCCcccccchhccccCceeecCCCCccCCCChHHhhccccccEeecCCCCCcceeeeccC
Q 002574          403 SIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSY  482 (906)
Q Consensus       403 ~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  482 (906)
                      .++..+..+++|+.|+++++...+.+|. +..+++|+.|++.+|....                                
T Consensus       625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~--------------------------------  671 (1153)
T PLN03210        625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLV--------------------------------  671 (1153)
T ss_pred             ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCcc--------------------------------
Confidence            3444455555666666655543334442 4444444444444443322                                


Q ss_pred             CCcCCCCccEEEeecccCCCCCChhcccCCcccEEEccCCCccCCCChhhhhhcCCCccEEEccCCcccCCCCCCCCCCC
Q 002574          483 NWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPN  562 (906)
Q Consensus       483 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~  562 (906)
                                          .+|..+..+++|+.|++++|.....+|...   .+++|+.|++++|...+.+|..  ..+
T Consensus       672 --------------------~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~Lsgc~~L~~~p~~--~~n  726 (1153)
T PLN03210        672 --------------------ELPSSIQYLNKLEDLDMSRCENLEILPTGI---NLKSLYRLNLSGCSRLKSFPDI--STN  726 (1153)
T ss_pred             --------------------ccchhhhccCCCCEEeCCCCCCcCccCCcC---CCCCCCEEeCCCCCCccccccc--cCC
Confidence                                333444444444444444444444444311   2345666666666544444432  236


Q ss_pred             ccEEeccCccCcccCCCC--cccccccccccccCCCCCCchhhcccccceeeccccccccccCCCCCCCCCCCcEEEccC
Q 002574          563 LRSIDLSSNHFEGTLPLW--STNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRS  640 (906)
Q Consensus       563 L~~L~ls~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~  640 (906)
                      |++|++++|.+.. +|..  +.+|++|.+.++... .+..                 .+....+..+...++|+.|++++
T Consensus       727 L~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~-~l~~-----------------~~~~l~~~~~~~~~sL~~L~Ls~  787 (1153)
T PLN03210        727 ISWLDLDETAIEE-FPSNLRLENLDELILCEMKSE-KLWE-----------------RVQPLTPLMTMLSPSLTRLFLSD  787 (1153)
T ss_pred             cCeeecCCCcccc-ccccccccccccccccccchh-hccc-----------------cccccchhhhhccccchheeCCC
Confidence            6777777776543 3322  345555555443211 0000                 00001111122234555555555


Q ss_pred             CcCcccCCCCccCCCCccEEeCCCCcccccCCcCCCCCCCCCEEECcCCccccccccccccCCCCCEEEccCCcCccccc
Q 002574          641 NKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLP  720 (906)
Q Consensus       641 n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p  720 (906)
                      |...+.+|..+.++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..   .++|+.|++++|.+. .+|
T Consensus       788 n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP  862 (1153)
T PLN03210        788 IPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVP  862 (1153)
T ss_pred             CCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cCh
Confidence            55555555555555555555555554333444433 4555566666555444344432   245556666666555 555


Q ss_pred             HHHHhcCCCCcEEEccCCccccccCccccCCCCCCEEeCCCCc
Q 002574          721 LWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNN  763 (906)
Q Consensus       721 ~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  763 (906)
                      .++.. +++|+.|++++|.-...+|..+..+++|+.+++++|.
T Consensus       863 ~si~~-l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        863 WWIEK-FSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             HHHhc-CCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            55543 5666666665544333455555555666666655553

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=5.1e-24  Score=214.51  Aligned_cols=417  Identities=24%  Similarity=0.271  Sum_probs=230.8

Q ss_pred             CCCCEEEeecccccccCchhhcCCCCCCeEeCCCCCCCCCCcchhhhcCCCCCEEEccC-CcCCcccccccccCCCCCCC
Q 002574          287 TSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSA-NNLNGEVHEFFDGFSGRPNN  365 (906)
Q Consensus       287 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~~~~~  365 (906)
                      +.-..++|..|+|+.+.+.+|+.+++|+.|||++| .++.+-|.+|.++++|.+|-+.+ |+|+......|+++.    .
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~----s  141 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS----S  141 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH----H
Confidence            35566777777777666667777777777777777 67667777777777766665555 777777777777776    7


Q ss_pred             ccEEECcCCCCCCccchhccCCCCCceeeccCccccCCCCccCCCCCCCCEEeCcCccCCcccccchhccccCceeecCC
Q 002574          366 LEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQ  445 (906)
Q Consensus       366 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~  445 (906)
                      |+.|.+.-|++.-...+.|..++++..|.+.+|.+...--..|..+..++.+.+..|.+..     ..+++.+..-. .-
T Consensus       142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~-a~  215 (498)
T KOG4237|consen  142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDL-AM  215 (498)
T ss_pred             HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhhHH-hh
Confidence            7777777777776666677777777777777777764333367777777777777776421     12222221110 00


Q ss_pred             CCccCCCChHHhhccccccEeecCCCCCcceeeeccCCCcCCCCccEEEeecccCCCCCChhcccCCcccEEEccCCCcc
Q 002574          446 NSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGIS  525 (906)
Q Consensus       446 n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  525 (906)
                      +.+       .++...-....++.+.++.                                                   
T Consensus       216 ~~i-------etsgarc~~p~rl~~~Ri~---------------------------------------------------  237 (498)
T KOG4237|consen  216 NPI-------ETSGARCVSPYRLYYKRIN---------------------------------------------------  237 (498)
T ss_pred             chh-------hcccceecchHHHHHHHhc---------------------------------------------------
Confidence            110       1111111111111111000                                                   


Q ss_pred             CCCChhhhhhcCCCccEEEccCCcccCCCCCCCCCCCccEEeccCccCcccCCCCcccccccccccccCCCCCCchhhcc
Q 002574          526 DTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSL  605 (906)
Q Consensus       526 ~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~  605 (906)
                       .++..-|...   ++                                         ++..-..+.+...+.-|..-   
T Consensus       238 -q~~a~kf~c~---~e-----------------------------------------sl~s~~~~~d~~d~~cP~~c---  269 (498)
T KOG4237|consen  238 -QEDARKFLCS---LE-----------------------------------------SLPSRLSSEDFPDSICPAKC---  269 (498)
T ss_pred             -ccchhhhhhh---HH-----------------------------------------hHHHhhccccCcCCcChHHH---
Confidence             0000000000   00                                         00000001111112333333   


Q ss_pred             cccceeeccccccccccCCCCCCCCCCCcEEEccCCcCcccCCCCccCCCCccEEeCCCCcccccCCcCCCCCCCCCEEE
Q 002574          606 MPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLL  685 (906)
Q Consensus       606 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  685 (906)
                                           |..+++|+.|++++|+++++-+.+|.+...++.|.|..|++.......|.++..|+.|+
T Consensus       270 ---------------------f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~  328 (498)
T KOG4237|consen  270 ---------------------FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLS  328 (498)
T ss_pred             ---------------------HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeee
Confidence                                 45566666666666666666666666666666666666666655556677777777788


Q ss_pred             CcCCccccccccccccCCCCCEEEccCCcCccccc-HHHHhcCCCCcEEEccCCccccccCccccCCCCCCEEeCCCCcC
Q 002574          686 LSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLP-LWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNF  764 (906)
Q Consensus       686 Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  764 (906)
                      |.+|+|+...|.+|..+.+|.+|++-.|++-..-- .|+.+        .|+++...|..|-  +.-..++.++++++.+
T Consensus       329 L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~--------Wlr~~~~~~~~~C--q~p~~~~~~~~~dv~~  398 (498)
T KOG4237|consen  329 LYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE--------WLRKKSVVGNPRC--QSPGFVRQIPISDVAF  398 (498)
T ss_pred             ecCCeeEEEecccccccceeeeeehccCcccCccchHHHHH--------HHhhCCCCCCCCC--CCCchhccccchhccc
Confidence            88888777777777777778888777776643211 23322        1222332222211  1112334444444433


Q ss_pred             C---CCCCcccc---------cccccccCCCccchheeeeee-ecCCCcccccccCcccEEEcCCCcccccCChhhhccC
Q 002574          765 S---GAIPRCIG---------NLSALVYGNNSEVFQQLIWRV-VKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLS  831 (906)
Q Consensus       765 ~---~~ip~~~~---------~l~~L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~  831 (906)
                      .   -.-|++.+         .++.+.          .+... -++...-..+....-+++++.+|.++ .+|.+  .+.
T Consensus       399 ~~~~c~~~ee~~~~~s~~cP~~c~c~~----------tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~-~vp~~--~~~  465 (498)
T KOG4237|consen  399 GDFRCGGPEELGCLTSSPCPPPCTCLD----------TVVRCSNKLLKLLPRGIPVDVTELYLDGNAIT-SVPDE--LLR  465 (498)
T ss_pred             cccccCCccccCCCCCCCCCCCcchhh----------hhHhhcccchhhcCCCCCchhHHHhcccchhc-ccCHH--HHh
Confidence            2   11222211         112110          00000 01111111233445588999999999 78877  778


Q ss_pred             CCCEEeCcCCcccccccccccCCCCCCeEeCcCC
Q 002574          832 ALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFN  865 (906)
Q Consensus       832 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N  865 (906)
                      +| .+|+|+|+++..--..|.+++.|.+|-+|||
T Consensus       466 ~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  466 SL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            88 9999999999888888999999999999997

>PLN03210 Resistant to P

Probab=99.86  E-value=1.6e-20  Score=234.31  Aligned_cols=338  Identities=23%  Similarity=0.331  Sum_probs=202.7

Q ss_pred             chhhcCCCCCCeEeCCCCC-----CCCCCcchhhhcCC-CCCEEEccCCcCCcccccccccCCCCCCCccEEECcCCCCC
Q 002574          304 PNEFANLKLLEVLDLSNNL-----DLGGQLPKLFGILR-RLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLE  377 (906)
Q Consensus       304 ~~~l~~l~~L~~L~L~~n~-----~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~L~~n~l~  377 (906)
                      +.+|.++++|+.|.+..+.     .....+|..+..++ +|+.|++.++.+...+ ..+.     +.+|++|++.+|++.
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP-~~f~-----~~~L~~L~L~~s~l~  624 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMP-SNFR-----PENLVKLQMQGSKLE  624 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCC-CcCC-----ccCCcEEECcCcccc
Confidence            4567778888888876541     12234566666664 6899999988876543 3332     238999999999987


Q ss_pred             CccchhccCCCCCceeeccCccccCCCCccCCCCCCCCEEeCcCccCCcccccchhccccCceeecCCCCccCCCChHHh
Q 002574          378 GELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQF  457 (906)
Q Consensus       378 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  457 (906)
                       .+|..+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..  
T Consensus       625 -~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--  700 (1153)
T PLN03210        625 -KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG--  700 (1153)
T ss_pred             -ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--
Confidence             6778888899999999998876667775 888999999999999877788999999999999999887644444431  


Q ss_pred             hccccccEeecCCCCCcceeeeccCCCcCCCCccEEEeecccCCCCCChhcccCCcccEEEccCCCccCCCChhhhhhcC
Q 002574          458 MNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLS  537 (906)
Q Consensus       458 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~  537 (906)
                      .++++|+.|++++|                                                   .....+|.     ..
T Consensus       701 i~l~sL~~L~Lsgc---------------------------------------------------~~L~~~p~-----~~  724 (1153)
T PLN03210        701 INLKSLYRLNLSGC---------------------------------------------------SRLKSFPD-----IS  724 (1153)
T ss_pred             CCCCCCCEEeCCCC---------------------------------------------------CCcccccc-----cc
Confidence            14444444444443                                                   22222221     12


Q ss_pred             CCccEEEccCCcccCCCCCCCCCCCccEEeccCccCccc----------CCCCcccccccccccccCCCCCCchhhcccc
Q 002574          538 SEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGT----------LPLWSTNADELFLQDNRFSGPLPENIGSLMP  607 (906)
Q Consensus       538 ~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~----------~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~  607 (906)
                      .+|+.|++++|.+. .+|.....++|++|.+.++.....          ....+++|+.|++++|...+.+|..+.. ++
T Consensus       725 ~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~-L~  802 (1153)
T PLN03210        725 TNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQN-LH  802 (1153)
T ss_pred             CCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhC-CC
Confidence            34566666666554 445555555666666655432110          0011345555555555555555554332 45


Q ss_pred             cceeeccccccccccCCCCCCCCCCCcEEEccCCcCcccCCCCccCCCCccEEeCCCCcccccCCcCCCCCCCCCEEECc
Q 002574          608 RLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLS  687 (906)
Q Consensus       608 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  687 (906)
                      +|++|++++|...+.+|..+ .+++|+.|++++|.....+|..   ..+|+.|++++|.++ .+|.++..+++|+.|+++
T Consensus       803 ~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~  877 (1153)
T PLN03210        803 KLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMN  877 (1153)
T ss_pred             CCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECC
Confidence            55555555554433444433 4555555555555444344332   244555555555554 345555555555555555


Q ss_pred             CCccccccccccccCCCCCEEEccCCc
Q 002574          688 NNNLSGGIPCSLQNCTGLTSIDLGGNQ  714 (906)
Q Consensus       688 ~n~l~~~~p~~l~~l~~L~~L~L~~N~  714 (906)
                      +|.-...+|..+..+++|+.+++++|.
T Consensus       878 ~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        878 GCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCcCccCcccccccCCCeeecCCCc
Confidence            544333445455555555555555553

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.85  E-value=1.4e-22  Score=204.29  Aligned_cols=264  Identities=25%  Similarity=0.271  Sum_probs=178.7

Q ss_pred             CCcEEEccCCcCCCCCCccCcCCCCcccEEECCCCcCCCCChhhhhcCCCCCEEEeec-ccccccCchhhcCCCCCCeEe
Q 002574          239 SLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRW-NFFTGHIPNEFANLKLLEVLD  317 (906)
Q Consensus       239 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~-n~~~~~~~~~l~~l~~L~~L~  317 (906)
                      .-.+++|..|+|+.+|+ .+|+.+++|+.||||+|.|+.+-|..|..+++|..|-+.+ |+|+......|+++..|+.|.
T Consensus        68 ~tveirLdqN~I~~iP~-~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPP-GAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCcccCCh-hhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            55788888999988887 5689999999999999999988899999999888877766 888876667889999999999


Q ss_pred             CCCCCCCCCCcchhhhcCCCCCEEEccCCcCCcccccccccCCCCCCCccEEECcCCCCCC------------ccchhcc
Q 002574          318 LSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEG------------ELPKSLG  385 (906)
Q Consensus       318 L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~------------~~p~~l~  385 (906)
                      +.-| ++.......|..+++|..|.+.+|.+..+....|.++.    .++.+.+..|.+..            ..|..++
T Consensus       147 lNan-~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~----~i~tlhlA~np~icdCnL~wla~~~a~~~iets  221 (498)
T KOG4237|consen  147 LNAN-HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLA----AIKTLHLAQNPFICDCNLPWLADDLAMNPIETS  221 (498)
T ss_pred             cChh-hhcchhHHHHHHhhhcchhcccchhhhhhccccccchh----ccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence            9888 88888888899999999999999988877666777777    88888888887321            1222233


Q ss_pred             CCCCCceeeccCccccC-------------------------CCC-ccCCCCCCCCEEeCcCccCCcccccchhccccCc
Q 002574          386 NLKNLQYLRLSGNSFWG-------------------------SIP-SSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELV  439 (906)
Q Consensus       386 ~l~~L~~L~L~~n~l~~-------------------------~~p-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~  439 (906)
                      ......-..+.+.++..                         .-| ..|..+++|+.|++++|++++.-+.+|.+...++
T Consensus       222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~  301 (498)
T KOG4237|consen  222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQ  301 (498)
T ss_pred             cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhh
Confidence            33222222232222221                         112 2355666666666666666666666666666666


Q ss_pred             eeecCCCCccCCCChHHhhccccccEeecCCCCCcceeeeccCCCcCCCCccEEEeecccCCCCCChhcccCCcccEEEc
Q 002574          440 DANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVIL  519 (906)
Q Consensus       440 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  519 (906)
                      +|.+..|++..+-.. .|.++..|+.|++.+|                           +++...|..+.....|.+|.+
T Consensus       302 eL~L~~N~l~~v~~~-~f~~ls~L~tL~L~~N---------------------------~it~~~~~aF~~~~~l~~l~l  353 (498)
T KOG4237|consen  302 ELYLTRNKLEFVSSG-MFQGLSGLKTLSLYDN---------------------------QITTVAPGAFQTLFSLSTLNL  353 (498)
T ss_pred             hhhcCcchHHHHHHH-hhhccccceeeeecCC---------------------------eeEEEecccccccceeeeeeh
Confidence            666666666544332 5666666666665555                           444444555666666666666


Q ss_pred             cCCCccCCCChhhhhhc
Q 002574          520 RNVGISDTIPGDWFSKL  536 (906)
Q Consensus       520 ~~~~~~~~~p~~~~~~~  536 (906)
                      -.|.+.-.---.|+..+
T Consensus       354 ~~Np~~CnC~l~wl~~W  370 (498)
T KOG4237|consen  354 LSNPFNCNCRLAWLGEW  370 (498)
T ss_pred             ccCcccCccchHHHHHH
Confidence            55555433223344443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=1.1e-20  Score=217.91  Aligned_cols=241  Identities=28%  Similarity=0.376  Sum_probs=123.3

Q ss_pred             CccEEeccCccCcccCCCCcccccccccccccCCCCCCchhhcccccceeeccccccccccCCCCCCCCCCCcEEEccCC
Q 002574          562 NLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSN  641 (906)
Q Consensus       562 ~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n  641 (906)
                      +|+.|++.+|+++. +|..+++|++|++++|+++ .+|..    .++|++|++++|.++. +|..   .++|+.|++++|
T Consensus       223 ~L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N  292 (788)
T PRK15387        223 HITTLVIPDNNLTS-LPALPPELRTLEVSGNQLT-SLPVL----PPGLLELSIFSNPLTH-LPAL---PSGLCKLWIFGN  292 (788)
T ss_pred             CCCEEEccCCcCCC-CCCCCCCCcEEEecCCccC-cccCc----ccccceeeccCCchhh-hhhc---hhhcCEEECcCC
Confidence            34444444444332 2333344444444444444 23321    2345555555555542 2221   234555666666


Q ss_pred             cCcccCCCCccCCCCccEEeCCCCcccccCCcCCCCCCCCCEEECcCCccccccccccccCCCCCEEEccCCcCcccccH
Q 002574          642 KLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPL  721 (906)
Q Consensus       642 ~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~  721 (906)
                      +++ .+|.   ..++|+.|++++|++++. |..   ..+|+.|++++|.+.+ +|..   ..+|+.|++++|+++ .+|.
T Consensus       293 ~Lt-~LP~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~  359 (788)
T PRK15387        293 QLT-SLPV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLA-SLPT  359 (788)
T ss_pred             ccc-cccc---cccccceeECCCCccccC-CCC---cccccccccccCcccc-cccc---ccccceEecCCCccC-CCCC
Confidence            655 2333   134566666666666542 321   1245556666666652 3421   135666666666665 4443


Q ss_pred             HHHhcCCCCcEEEccCCccccccCccccCCCCCCEEeCCCCcCCCCCCcccccccccccCCCccchheeeeeeecCCCcc
Q 002574          722 WISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPE  801 (906)
Q Consensus       722 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~  801 (906)
                      .    ..+|+.|++++|++.+ +|..   ..+|+.|++++|+++ .+|...   +.                        
T Consensus       360 l----p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l~---s~------------------------  403 (788)
T PRK15387        360 L----PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVLP---SE------------------------  403 (788)
T ss_pred             C----Ccccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCcc---cC------------------------
Confidence            2    3455666666666653 4432   235666666666665 244321   12                        


Q ss_pred             cccccCcccEEEcCCCcccccCChhhhccCCCCEEeCcCCcccccccccccCCCCCCeEeCcCCcccccCCC
Q 002574          802 YSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPS  873 (906)
Q Consensus       802 ~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~  873 (906)
                             |+.|++++|++++ +|...   .+|+.|++++|+++ .+|..+.+++.|+.|++++|+|+|.+|.
T Consensus       404 -------L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        404 -------LKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             -------CCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence                   2556666666663 45432   34556666666666 4666666666666666666666666554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=3.1e-20  Score=214.14  Aligned_cols=265  Identities=29%  Similarity=0.416  Sum_probs=192.1

Q ss_pred             cEEEccCCCccCCCChhhhhhcCCCccEEEccCCcccCCCCCCCCCCCccEEeccCccCcccCCCCcccccccccccccC
Q 002574          515 TSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRF  594 (906)
Q Consensus       515 ~~L~l~~~~~~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l  594 (906)
                      ..|+++++.++ .+|...    +.+++.|++.+|+++. +|..  .++|++|++++|.++. +|..+.+|+.|++++|.+
T Consensus       204 ~~LdLs~~~Lt-sLP~~l----~~~L~~L~L~~N~Lt~-LP~l--p~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~L  274 (788)
T PRK15387        204 AVLNVGESGLT-TLPDCL----PAHITTLVIPDNNLTS-LPAL--PPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPL  274 (788)
T ss_pred             cEEEcCCCCCC-cCCcch----hcCCCEEEccCCcCCC-CCCC--CCCCcEEEecCCccCc-ccCcccccceeeccCCch
Confidence            45566666554 445422    2356777777777663 3432  3577777777777764 355567777888888777


Q ss_pred             CCCCCchhhcccccceeeccccccccccCCCCCCCCCCCcEEEccCCcCcccCCCCccCCCCccEEeCCCCcccccCCcC
Q 002574          595 SGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSS  674 (906)
Q Consensus       595 ~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~  674 (906)
                      . .+|.    ....|+.|++++|+++. +|.   .+++|+.|++++|++++ +|..   ...|+.|++++|.+++ +|..
T Consensus       275 ~-~Lp~----lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l  340 (788)
T PRK15387        275 T-HLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL  340 (788)
T ss_pred             h-hhhh----chhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-cccc
Confidence            6 3443    23567788888888874 343   25789999999999885 4542   3467888999999875 4432


Q ss_pred             CCCCCCCCEEECcCCccccccccccccCCCCCEEEccCCcCcccccHHHHhcCCCCcEEEccCCccccccCccccCCCCC
Q 002574          675 FGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNL  754 (906)
Q Consensus       675 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  754 (906)
                         ..+|+.|+|++|++++ +|..   ..+|+.|++++|++. .+|..    ..+|+.|++++|++++ +|..   .++|
T Consensus       341 ---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l----~~~L~~LdLs~N~Lt~-LP~l---~s~L  404 (788)
T PRK15387        341 ---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLTS-LPVL---PSEL  404 (788)
T ss_pred             ---ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc----ccccceEEecCCcccC-CCCc---ccCC
Confidence               2479999999999984 5543   357888999999998 57753    4679999999999985 5543   3679


Q ss_pred             CEEeCCCCcCCCCCCcccccccccccCCCccchheeeeeeecCCCcccccccCcccEEEcCCCcccccCChhhhccCCCC
Q 002574          755 HIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALH  834 (906)
Q Consensus       755 ~~L~Ls~N~l~~~ip~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~  834 (906)
                      +.|++++|+++ .+|....   .|                               +.|++++|+++ .+|..+.++++|+
T Consensus       405 ~~LdLS~N~Ls-sIP~l~~---~L-------------------------------~~L~Ls~NqLt-~LP~sl~~L~~L~  448 (788)
T PRK15387        405 KELMVSGNRLT-SLPMLPS---GL-------------------------------LSLSVYRNQLT-RLPESLIHLSSET  448 (788)
T ss_pred             CEEEccCCcCC-CCCcchh---hh-------------------------------hhhhhccCccc-ccChHHhhccCCC
Confidence            99999999998 4675322   23                               67899999999 7899999999999


Q ss_pred             EEeCcCCcccccccccccCC
Q 002574          835 ILNLSHNQLSGAIPQSLSSL  854 (906)
Q Consensus       835 ~L~Ls~N~l~~~ip~~l~~l  854 (906)
                      .|+|++|++++.+|..+..+
T Consensus       449 ~LdLs~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        449 TVNLEGNPLSERTLQALREI  468 (788)
T ss_pred             eEECCCCCCCchHHHHHHHH
Confidence            99999999999988877443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=9.8e-19  Score=203.43  Aligned_cols=203  Identities=22%  Similarity=0.394  Sum_probs=102.8

Q ss_pred             CCccEEEccCCcccCCCCCCCCCCCccEEeccCccCcccCCCCcccccccccccccCCCCCCchhhcccccceeeccccc
Q 002574          538 SEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWN  617 (906)
Q Consensus       538 ~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n  617 (906)
                      .+...|+++++.++. +|..+ ...++.|++++|.++........+|+.|++++|++. .+|..+.   ..|+.|++++|
T Consensus       178 ~~~~~L~L~~~~Lts-LP~~I-p~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N  251 (754)
T PRK15370        178 NNKTELRLKILGLTT-IPACI-PEQITTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATLP---DTIQEMELSIN  251 (754)
T ss_pred             cCceEEEeCCCCcCc-CCccc-ccCCcEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChhhh---ccccEEECcCC
Confidence            456778888887773 44432 136777777777776433333456666666666655 4454332   24555556666


Q ss_pred             cccccCCCCCCCCCCCcEEEccCCcCcccCCCCccCCCCccEEeCCCCcccccCCcCCCCCCCCCEEECcCCcccccccc
Q 002574          618 QLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPC  697 (906)
Q Consensus       618 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~  697 (906)
                      .+. .+|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|++++|++++ +|..+.  ++|+.|++++|.++. +|.
T Consensus       252 ~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~  321 (754)
T PRK15370        252 RIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPE  321 (754)
T ss_pred             ccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCc
Confidence            555 3343332  34555555555555 3444332  345555555555553 232221  245555555555552 333


Q ss_pred             ccccCCCCCEEEccCCcCcccccHHHHhcCCCCcEEEccCCccccccCccccCCCCCCEEeCCCCcCC
Q 002574          698 SLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFS  765 (906)
Q Consensus       698 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  765 (906)
                      .+  .++|+.|++++|.++ .+|..+   .++|+.|++++|++. .+|..+  .++|+.|++++|+++
T Consensus       322 ~l--~~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt  380 (754)
T PRK15370        322 TL--PPGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT  380 (754)
T ss_pred             cc--cccceeccccCCccc-cCChhh---cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC
Confidence            22  134555555555554 344433   235555555555554 233333  134555555555554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=1.9e-18  Score=200.98  Aligned_cols=281  Identities=26%  Similarity=0.425  Sum_probs=187.7

Q ss_pred             ccEEEccCCCccCCCChhhhhhcCCCccEEEccCCcccCCCCCCCCCCCccEEeccCccCcccCCCCccccccccccccc
Q 002574          514 LTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNR  593 (906)
Q Consensus       514 L~~L~l~~~~~~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~  593 (906)
                      ...|++++++++ .+|..    .++.++.|++++|.++. +|.... .+|++|++++|.+++.......+|+.|++++|+
T Consensus       180 ~~~L~L~~~~Lt-sLP~~----Ip~~L~~L~Ls~N~Lts-LP~~l~-~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~  252 (754)
T PRK15370        180 KTELRLKILGLT-TIPAC----IPEQITTLILDNNELKS-LPENLQ-GNIKTLYANSNQLTSIPATLPDTIQEMELSINR  252 (754)
T ss_pred             ceEEEeCCCCcC-cCCcc----cccCCcEEEecCCCCCc-CChhhc-cCCCEEECCCCccccCChhhhccccEEECcCCc
Confidence            345555555544 23431    23457777777777763 333322 367777777777764322335577888888888


Q ss_pred             CCCCCCchhhcccccceeeccccccccccCCCCCCCCCCCcEEEccCCcCcccCCCCccCCCCccEEeCCCCcccccCCc
Q 002574          594 FSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPS  673 (906)
Q Consensus       594 l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~  673 (906)
                      +. .+|..+.   .+|+.|++++|+++. +|..+.  ++|+.|++++|++++ +|..+.  ++|+.|++++|.++. +|.
T Consensus       253 L~-~LP~~l~---s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~  321 (754)
T PRK15370        253 IT-ELPERLP---SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPE  321 (754)
T ss_pred             cC-cCChhHh---CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCc
Confidence            77 6776654   478888999888884 565553  589999999999884 555442  478899999999985 454


Q ss_pred             CCCCCCCCCEEECcCCccccccccccccCCCCCEEEccCCcCcccccHHHHhcCCCCcEEEccCCccccccCccccCCCC
Q 002574          674 SFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQN  753 (906)
Q Consensus       674 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  753 (906)
                      .+.  ++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+   .++|++|++++|+++ .+|+.+.  ..
T Consensus       322 ~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~Lt-~LP~~l~--~s  389 (754)
T PRK15370        322 TLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNALT-NLPENLP--AA  389 (754)
T ss_pred             ccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcCC-CCCHhHH--HH
Confidence            433  689999999999884 676653  78999999999998 688765   468999999999998 4566553  36


Q ss_pred             CCEEeCCCCcCCCCCCcccccccccccCCCccchheeeeeeecCCCcccccccCcccEEEcCCCcccccCChhhhccCCC
Q 002574          754 LHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSAL  833 (906)
Q Consensus       754 L~~L~Ls~N~l~~~ip~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L  833 (906)
                      |+.|++++|+++ .+|..+.++...                           .+.+..|++.+|.++.      ..+.+|
T Consensus       390 L~~LdLs~N~L~-~LP~sl~~~~~~---------------------------~~~l~~L~L~~Npls~------~tl~~L  435 (754)
T PRK15370        390 LQIMQASRNNLV-RLPESLPHFRGE---------------------------GPQPTRIIVEYNPFSE------RTIQNM  435 (754)
T ss_pred             HHHHhhccCCcc-cCchhHHHHhhc---------------------------CCCccEEEeeCCCccH------HHHHHH
Confidence            889999999987 667655443322                           2344788899998872      233344


Q ss_pred             CEEeCcCCcccc-cccccccCCCCCCe
Q 002574          834 HILNLSHNQLSG-AIPQSLSSLASLSK  859 (906)
Q Consensus       834 ~~L~Ls~N~l~~-~ip~~l~~l~~L~~  859 (906)
                      +.| ++.+...| .++..+...+.++.
T Consensus       436 ~~L-l~s~~~~gp~i~~~~~~~~~l~~  461 (754)
T PRK15370        436 QRL-MSSVGYQGPRVLFAMGDFSIVRV  461 (754)
T ss_pred             HHh-hhcccccCCcccccccccccccc
Confidence            444 33444433 33444444444443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=2.2e-18  Score=187.32  Aligned_cols=269  Identities=26%  Similarity=0.243  Sum_probs=129.7

Q ss_pred             EEeCCCCCCCCCCCChhhhcCCCCCeeeccCCcCccC----CCcCcCCCCCCcEEEccCCCCCCCcCCccccccchhhhc
Q 002574          133 TLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGE----IPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLS  208 (906)
Q Consensus       133 ~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~l~  208 (906)
                      .|+|..+.+++...+..+..+.+|++|+++++.+++.    ++..+...+.|++|+++++.+...+...   ......+.
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~---~~~~~~l~   78 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGL---QSLLQGLT   78 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHH---HHHHHHHH
Confidence            4677777777555677777788888888888877532    4555666677777777766554211100   01112244


Q ss_pred             CCCCCcEEECCCccCCCCCcchHHHhcCCCCCcEEEccCCcCCCCCCccCcCCCCcccEEECCCCcCCCCChhhhhcC-C
Q 002574          209 GLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSL-T  287 (906)
Q Consensus       209 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l-~  287 (906)
                      ++++|++|++++|.+..........+...++|++|++++|++.+...                     ..+...+..+ +
T Consensus        79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~---------------------~~l~~~l~~~~~  137 (319)
T cd00116          79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL---------------------RLLAKGLKDLPP  137 (319)
T ss_pred             hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH---------------------HHHHHHHHhCCC
Confidence            45566666665555543322222211111334444444444332110                     0112223333 4


Q ss_pred             CCCEEEeecccccc----cCchhhcCCCCCCeEeCCCCCCCCCC----cchhhhcCCCCCEEEccCCcCCcccccccccC
Q 002574          288 SLTKLYLRWNFFTG----HIPNEFANLKLLEVLDLSNNLDLGGQ----LPKLFGILRRLKSLDLSANNLNGEVHEFFDGF  359 (906)
Q Consensus       288 ~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~L~~n~~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l  359 (906)
                      +|+.|++++|.+++    .++..+..+++|++|++++| .+.+.    ++..+..+++|++|++++|.+++.....+...
T Consensus       138 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            55555555555442    12223444455555555555 44421    12223344456666666555544333322222


Q ss_pred             CCCCCCccEEECcCCCCCCccchhcc-----CCCCCceeeccCccccC----CCCccCCCCCCCCEEeCcCccCCc
Q 002574          360 SGRPNNLEYLDLSSNSLEGELPKSLG-----NLKNLQYLRLSGNSFWG----SIPSSIGNLSSLRKLDLSYNGMNG  426 (906)
Q Consensus       360 ~~~~~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~~~~  426 (906)
                      ....++|++|++++|.+++.....+.     ..+.|++|++++|.++.    .+...+..+++|+.+++++|.++.
T Consensus       217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence            22233566666666655532222221     12455566665555541    122233444566666666666653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.68  E-value=8.8e-18  Score=182.66  Aligned_cols=115  Identities=24%  Similarity=0.274  Sum_probs=47.5

Q ss_pred             ccCCCCccEEeCCCCcccccCCcCCCCCCC---CCEEECcCCcccc----ccccccccC-CCCCEEEccCCcCcccccHH
Q 002574          651 WYHSQMFWGIDISNNSLTGSIPSSFGSLRS---LSVLLLSNNNLSG----GIPCSLQNC-TGLTSIDLGGNQLSGSLPLW  722 (906)
Q Consensus       651 l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~---L~~L~Ls~n~l~~----~~p~~l~~l-~~L~~L~L~~N~l~~~~p~~  722 (906)
                      +..+++|+.|++++|.+.+..+..+..+..   |+.|++++|++.+    .+...+..+ ++|+.|++++|.+++..+..
T Consensus        77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  156 (319)
T cd00116          77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA  156 (319)
T ss_pred             HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence            334445555555555444333332322222   5555555554441    112223333 45555555555544221111


Q ss_pred             HH---hcCCCCcEEEccCCccccc----cCccccCCCCCCEEeCCCCcCC
Q 002574          723 IS---ENLSSFFMLRLRSNLLSGD----IPQRLCNLQNLHIIDLSHNNFS  765 (906)
Q Consensus       723 ~~---~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~  765 (906)
                      +.   ..+++|++|++++|.+++.    ++..+..+++|+.|++++|.++
T Consensus       157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT  206 (319)
T ss_pred             HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence            11   1134455555555554421    1222333345555555555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.64  E-value=2.7e-18  Score=153.52  Aligned_cols=179  Identities=28%  Similarity=0.492  Sum_probs=103.3

Q ss_pred             ccEEeCCCCcccccCCcCCCCCCCCCEEECcCCccccccccccccCCCCCEEEccCCcCcccccHHHHhcCCCCcEEEcc
Q 002574          657 FWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLR  736 (906)
Q Consensus       657 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~  736 (906)
                      .+.|.+|+|+++ .+|..++.+.+|+.|++.+|+++ .+|.++..+++|+.|+++-|++. .+|..++. ++.|+.|||.
T Consensus        35 ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs-~p~levldlt  110 (264)
T KOG0617|consen   35 ITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS-FPALEVLDLT  110 (264)
T ss_pred             hhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC-Cchhhhhhcc
Confidence            333344444443 23333444445555555555544 34444555555555555555544 44444443 5555555555


Q ss_pred             CCcccc-ccCccccCCCCCCEEeCCCCcCCCCCCcccccccccccCCCccchheeeeeeecCCCcccccccCcccEEEcC
Q 002574          737 SNLLSG-DIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLS  815 (906)
Q Consensus       737 ~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs  815 (906)
                      .|.+.. .+|..|..++.|+.|.+++|.|. .+|..+++++.|                               +.|.+.
T Consensus       111 ynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~l-------------------------------qil~lr  158 (264)
T KOG0617|consen  111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNL-------------------------------QILSLR  158 (264)
T ss_pred             ccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcce-------------------------------eEEeec
Confidence            554432 35666666666777777777765 666666666666                               567777


Q ss_pred             CCcccccCChhhhccCCCCEEeCcCCcccccccccccCCC---CCCeEeCcCCcccccCCC
Q 002574          816 WNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLA---SLSKLNLSFNNLAGKIPS  873 (906)
Q Consensus       816 ~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~---~L~~L~ls~N~l~g~iP~  873 (906)
                      .|.+- ..|.+++.++.|+.|.+.+|+++ .+|..++++.   +=+.+.+.+|+...+|.+
T Consensus       159 dndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae  217 (264)
T KOG0617|consen  159 DNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE  217 (264)
T ss_pred             cCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence            77766 56777777778888888888777 5566666543   234556677777666643

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.62  E-value=1.2e-17  Score=149.40  Aligned_cols=183  Identities=27%  Similarity=0.443  Sum_probs=120.8

Q ss_pred             CCCCCcEEEccCCcCcccCCCCccCCCCccEEeCCCCcccccCCcCCCCCCCCCEEECcCCccccccccccccCCCCCEE
Q 002574          629 NLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSI  708 (906)
Q Consensus       629 ~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  708 (906)
                      .+...+.|.+++|+++ .+|..+..+.+|+.|++++|++. .+|..++++++|+.|+++-|++. ..|..|+.++.|+.|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            3455566666666666 45555666666666666666666 45666677777777777777766 667777777777777


Q ss_pred             EccCCcCcc-cccHHHHhcCCCCcEEEccCCccccccCccccCCCCCCEEeCCCCcCCCCCCcccccccccccCCCccch
Q 002574          709 DLGGNQLSG-SLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVF  787 (906)
Q Consensus       709 ~L~~N~l~~-~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~~~~~~~~  787 (906)
                      |+.+|.+.. .+|..++. ++.|+.|.|++|.+. .+|++++++++|+.|.+.+|.+. .+|..++.++.|         
T Consensus       108 dltynnl~e~~lpgnff~-m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~l---------  175 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFY-MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRL---------  175 (264)
T ss_pred             hccccccccccCCcchhH-HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHH---------
Confidence            777776653 45665554 677777777777776 66777777777777777777776 677777777766         


Q ss_pred             heeeeeeecCCCcccccccCcccEEEcCCCcccccCChhhhccCCC---CEEeCcCCcccccccc
Q 002574          788 QQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSAL---HILNLSHNQLSGAIPQ  849 (906)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L---~~L~Ls~N~l~~~ip~  849 (906)
                                            ++|.+.+|+++ .+|.+++++.-+   +.+.+.+|.....|.+
T Consensus       176 ----------------------relhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae  217 (264)
T KOG0617|consen  176 ----------------------RELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE  217 (264)
T ss_pred             ----------------------HHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence                                  67777777777 566666665432   3445556655444433

>PLN03150 hypothetical protein; Provisional

Probab=99.44  E-value=4.5e-13  Score=156.21  Aligned_cols=129  Identities=36%  Similarity=0.623  Sum_probs=112.1

Q ss_pred             CCcHHHHHHHHHHHhhCCCCCCCCCCCCCCCCC----CccceEecC--CCC--cEEEEecCCcccccCCCcCCCcCCCCc
Q 002574           44 LCLDAEREGLLAFKESLTDPSGRLSSWVGQDCC----KWNGVYCNN--QSG--HVTQLNLRNPYQLINGGVGDSTAYKGS  115 (906)
Q Consensus        44 ~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~c----~w~gv~C~~--~~~--~v~~L~L~~~~~~~~~~~~~~~~~~~~  115 (906)
                      .+.++|.+||+++|+++.++..  .+|.+..||    .|.||.|..  ..+  +|+.|+|+++                 
T Consensus       368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n-----------------  428 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLGLPLR--FGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ-----------------  428 (623)
T ss_pred             ccCchHHHHHHHHHHhcCCccc--CCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCC-----------------
Confidence            4567799999999999976542  489776553    799999952  222  5999999987                 


Q ss_pred             cccccccccccCCCCCCEEeCCCCCCCCCCCChhhhcCCCCCeeeccCCcCccCCCcCcCCCCCCcEEEccCCCCCC
Q 002574          116 CLGGKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSS  192 (906)
Q Consensus       116 ~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~  192 (906)
                      .+.|.+|+.++++++|++|+|++|.+.+. +|..++.+++|++|+|++|+++|.+|..++++++|++|++++|.+.+
T Consensus       429 ~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g  504 (623)
T PLN03150        429 GLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG  504 (623)
T ss_pred             CccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccc
Confidence            78899999999999999999999999987 99999999999999999999999999999999999999999887754

>PLN03150 hypothetical protein; Provisional

Probab=99.31  E-value=2.7e-12  Score=149.75  Aligned_cols=115  Identities=37%  Similarity=0.622  Sum_probs=72.8

Q ss_pred             CCEEeCCCCcCCCCCCcccccccccccCCCccchheeeeeeecCCCcccccccCcccEEEcCCCcccccCChhhhccCCC
Q 002574          754 LHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSAL  833 (906)
Q Consensus       754 L~~L~Ls~N~l~~~ip~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L  833 (906)
                      ++.|+|++|.+.|.+|..+++++.|                               +.|+|++|.++|.+|..++++++|
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L-------------------------------~~L~Ls~N~l~g~iP~~~~~l~~L  468 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHL-------------------------------QSINLSGNSIRGNIPPSLGSITSL  468 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCC-------------------------------CEEECCCCcccCcCChHHhCCCCC
Confidence            4555666666666666665555555                               556666666666666666666666


Q ss_pred             CEEeCcCCcccccccccccCCCCCCeEeCcCCcccccCCCC-C----CCCCCCccCCCCCCCCCCCCCCCCC
Q 002574          834 HILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSL-P----NFNDPSIYEGNPLLCGAPLPTKCPG  900 (906)
Q Consensus       834 ~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~----~~~~~~~~~gn~~lc~~~l~~~c~~  900 (906)
                      +.|||++|+++|.+|+.+.++++|++|++++|+++|.+|.. .    ...... +.+|+++||.|-...|..
T Consensus       469 ~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~-~~~N~~lc~~p~l~~C~~  539 (623)
T PLN03150        469 EVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN-FTDNAGLCGIPGLRACGP  539 (623)
T ss_pred             CEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEE-ecCCccccCCCCCCCCcc
Confidence            66666666666666666666666666666666666666654 1    112233 788999998875567853

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.27  E-value=1.4e-13  Score=146.05  Aligned_cols=202  Identities=24%  Similarity=0.388  Sum_probs=160.6

Q ss_pred             CCCCcEEEccCCcCcccCCCCccCCCCccEEeCCCCcccccCCcCCCCCCCCCEEECcCCccccccccccccCCCCCEEE
Q 002574          630 LEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSID  709 (906)
Q Consensus       630 l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  709 (906)
                      +..-...|++.|++. .+|..+..+..|+.+.+.+|.+. .+|..++++..|++|+|+.|+++ .+|..++.|+ |+.|-
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI  149 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence            444567888999988 78888888888999999999888 67788888999999999999988 6777777775 88889


Q ss_pred             ccCCcCcccccHHHHhcCCCCcEEEccCCccccccCccccCCCCCCEEeCCCCcCCCCCCcccccccccccCCCccchhe
Q 002574          710 LGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQ  789 (906)
Q Consensus       710 L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~~~~~~~~~~  789 (906)
                      +++|+++ .+|..++ ....|..|+.+.|.+. .+|..++++.+|+.|++..|++. .+|+.+..|+             
T Consensus       150 ~sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-------------  212 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-------------  212 (722)
T ss_pred             EecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-------------
Confidence            9999988 8888888 5888888888888887 57778888888888888888887 6676665333             


Q ss_pred             eeeeeecCCCcccccccCcccEEEcCCCcccccCChhhhccCCCCEEeCcCCcccccccccc---cCCCCCCeEeCcCCc
Q 002574          790 LIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSL---SSLASLSKLNLSFNN  866 (906)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l---~~l~~L~~L~ls~N~  866 (906)
                                         |..||+|+|+++ .||-.|.+|+.|++|-|.+|.+. .-|..+   +...=.++|+...++
T Consensus       213 -------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  213 -------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             -------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence                               257899999998 78889999999999999999887 445544   334556788888875


Q ss_pred             ccccCCCC
Q 002574          867 LAGKIPSL  874 (906)
Q Consensus       867 l~g~iP~~  874 (906)
                       +|.-+.+
T Consensus       272 -~~~a~~~  278 (722)
T KOG0532|consen  272 -SGGALDL  278 (722)
T ss_pred             -ccCCccc
Confidence             4444443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.22  E-value=5e-13  Score=141.96  Aligned_cols=146  Identities=30%  Similarity=0.504  Sum_probs=67.8

Q ss_pred             CCCCCCCCCCcEEEccCCcCcccCCCCccCCCCccEEeCCCCcccccCCcCCCCCCCCCEEECcCCccccccccccccCC
Q 002574          624 PSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCT  703 (906)
Q Consensus       624 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  703 (906)
                      |..++.+..|+.+.+..|.+. .+|.++.++..|+++||+.|+++ ..|..++.++ |+.|.+++|+++ .+|..++...
T Consensus        91 p~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~  166 (722)
T KOG0532|consen   91 PEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLP  166 (722)
T ss_pred             chHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccch
Confidence            333444444444444444443 34444444444444444444444 3333344332 445555555544 4444444444


Q ss_pred             CCCEEEccCCcCcccccHHHHhcCCCCcEEEccCCccccccCccccCCCCCCEEeCCCCcCCCCCCccccccccc
Q 002574          704 GLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSAL  778 (906)
Q Consensus       704 ~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L  778 (906)
                      .|..||.+.|.+. .+|..+.. +.+|+.|.++.|++. .+|++++.+ .|..||+|+|+++ .||-+|.+|+.|
T Consensus       167 tl~~ld~s~nei~-slpsql~~-l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~L  236 (722)
T KOG0532|consen  167 TLAHLDVSKNEIQ-SLPSQLGY-LTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHL  236 (722)
T ss_pred             hHHHhhhhhhhhh-hchHHhhh-HHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhh
Confidence            5555555555544 44444443 455555555555544 334444422 2444555555554 455555544444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.20  E-value=2e-11  Score=136.48  Aligned_cols=152  Identities=40%  Similarity=0.586  Sum_probs=68.7

Q ss_pred             CCCEEECcCCccccccccccccCCCCCEEEccCCcCcccccHHHHhcCCCCcEEEccCCccccccCccccCCCCCCEEeC
Q 002574          680 SLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDL  759 (906)
Q Consensus       680 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  759 (906)
                      +|+.|++++|.+. .+|..+..+++|+.|++++|++. .+|..... .+.|+.|++++|++. .+|..+.....|+++++
T Consensus       141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~-~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~  216 (394)
T COG4886         141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSN-LSNLNNLDLSGNKIS-DLPPEIELLSALEELDL  216 (394)
T ss_pred             hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhh-hhhhhheeccCCccc-cCchhhhhhhhhhhhhh
Confidence            4455555555444 33333444555555555555554 34433322 445555555555554 33333333444555555


Q ss_pred             CCCcCCCCCCcccccccccccCCCccchheeeeeeecCCCcccccccCcccEEEcCCCcccccCChhhhccCCCCEEeCc
Q 002574          760 SHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLS  839 (906)
Q Consensus       760 s~N~l~~~ip~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls  839 (906)
                      ++|++. .++..+.++..+                               ..+.+++|++. .++..++++++++.|+++
T Consensus       217 ~~N~~~-~~~~~~~~~~~l-------------------------------~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s  263 (394)
T COG4886         217 SNNSII-ELLSSLSNLKNL-------------------------------SGLELSNNKLE-DLPESIGNLSNLETLDLS  263 (394)
T ss_pred             cCCcce-ecchhhhhcccc-------------------------------cccccCCceee-eccchhccccccceeccc
Confidence            555322 333333333333                               33444444444 223444555555555555


Q ss_pred             CCcccccccccccCCCCCCeEeCcCCccccc
Q 002574          840 HNQLSGAIPQSLSSLASLSKLNLSFNNLAGK  870 (906)
Q Consensus       840 ~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  870 (906)
                      +|.++. ++. +..+.+++.|++++|.++..
T Consensus       264 ~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         264 NNQISS-ISS-LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             cccccc-ccc-ccccCccCEEeccCcccccc
Confidence            555542 222 44455555555555544433

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.11  E-value=7.2e-12  Score=126.08  Aligned_cols=116  Identities=26%  Similarity=0.340  Sum_probs=58.1

Q ss_pred             hcCCCCCEEEeecccccc----cCchhhcCCCCCCeEeCCCCCCCCCC----cchhhhcCCCCCEEEccCCcCCcccccc
Q 002574          284 FSLTSLTKLYLRWNFFTG----HIPNEFANLKLLEVLDLSNNLDLGGQ----LPKLFGILRRLKSLDLSANNLNGEVHEF  355 (906)
Q Consensus       284 ~~l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~L~~n~~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~  355 (906)
                      ...+.|+.+.+..|.+..    .+...+..+++|++|||.+| -++..    +...+..+++|+.|++++|.+.......
T Consensus       182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a  260 (382)
T KOG1909|consen  182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA  260 (382)
T ss_pred             HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence            334455555555554431    11223445555555555555 33221    2233444556666666666554433222


Q ss_pred             -cccCCCCCCCccEEECcCCCCCCc----cchhccCCCCCceeeccCccc
Q 002574          356 -FDGFSGRPNNLEYLDLSSNSLEGE----LPKSLGNLKNLQYLRLSGNSF  400 (906)
Q Consensus       356 -~~~l~~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l  400 (906)
                       +..+....|.|+.|.+.+|.++..    +...+...+.|+.|+|++|++
T Consensus       261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence             122223344777777777776632    222344567777788887777

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.10  E-value=8.9e-11  Score=131.35  Aligned_cols=183  Identities=37%  Similarity=0.545  Sum_probs=124.3

Q ss_pred             CCCCCCcEEEccCCcCcccCCCCccCCC-CccEEeCCCCcccccCCcCCCCCCCCCEEECcCCccccccccccccCCCCC
Q 002574          628 CNLEDLQILSIRSNKLSGEFPNCWYHSQ-MFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLT  706 (906)
Q Consensus       628 ~~l~~L~~L~Ls~n~l~~~~p~~l~~~~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  706 (906)
                      ...+.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..++.+++|+.|++++|++. .+|......+.|+
T Consensus       113 ~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~  189 (394)
T COG4886         113 LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLN  189 (394)
T ss_pred             hcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhh
Confidence            34466777777777777 4455455553 7777777777776 33345677778888888888877 4555545677788


Q ss_pred             EEEccCCcCcccccHHHHhcCCCCcEEEccCCccccccCccccCCCCCCEEeCCCCcCCCCCCcccccccccccCCCccc
Q 002574          707 SIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEV  786 (906)
Q Consensus       707 ~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~~~~~~~  786 (906)
                      .|++++|++. .+|..+.. ...|+++.+++|+.. .++..+..+.++..+.+++|++. .++..++.++.+        
T Consensus       190 ~L~ls~N~i~-~l~~~~~~-~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l--------  257 (394)
T COG4886         190 NLDLSGNKIS-DLPPEIEL-LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNL--------  257 (394)
T ss_pred             heeccCCccc-cCchhhhh-hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhcccccc--------
Confidence            8888888877 67766532 555788888888543 34556677777777777777775 335555555555        


Q ss_pred             hheeeeeeecCCCcccccccCcccEEEcCCCcccccCChhhhccCCCCEEeCcCCccccccccc
Q 002574          787 FQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQS  850 (906)
Q Consensus       787 ~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~  850 (906)
                                             +.|++++|.++. ++. ++.+.+++.|++++|.++...|..
T Consensus       258 -----------------------~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         258 -----------------------ETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             -----------------------ceeccccccccc-ccc-ccccCccCEEeccCccccccchhh
Confidence                                   678888888873 343 778888888888888777655443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.08  E-value=1e-11  Score=124.94  Aligned_cols=265  Identities=26%  Similarity=0.259  Sum_probs=143.9

Q ss_pred             cccccccCCCCCCEEeCCCCCCCCC---CCChhhhcCCCCCeeeccCCcCcc----CCCcCcCCCCCCcEEEccCCCCCC
Q 002574          120 KINPSLLHLKYLDTLDLSLNDFEGA---EIPEYFGQLKNLRYLNLSFSSFSG----EIPPQLGSLSSLQYLDLYADSFSS  192 (906)
Q Consensus       120 ~l~~~l~~l~~L~~L~Ls~n~~~~~---~lp~~l~~l~~L~~L~Ls~n~~~~----~~p~~l~~l~~L~~L~ls~n~~~~  192 (906)
                      .+-+.+..+..+++++||+|.|...   .+-..+.+.++|+..++++- ++|    .+|+.+..+               
T Consensus        21 ~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l---------------   84 (382)
T KOG1909|consen   21 DVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKML---------------   84 (382)
T ss_pred             hHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHH---------------
Confidence            3445567788899999999988654   13345667778888888764 333    334332110               


Q ss_pred             CcCCccccccchhhhcCCCCCcEEECCCccCCCCCcc-hHHHhcCCCCCcEEEccCCcCCCCCCccCcCCCCcccEEECC
Q 002574          193 NSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGAD-WLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLS  271 (906)
Q Consensus       193 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls  271 (906)
                                 .+.+..+++|+++|||.|-+...+.. +-.-+..+..|++|+|.+|.+....... ++  ..|..|.  
T Consensus        85 -----------~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~-l~--~al~~l~--  148 (382)
T KOG1909|consen   85 -----------SKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGR-LG--RALFELA--  148 (382)
T ss_pred             -----------HHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHH-HH--HHHHHHH--
Confidence                       01133444555555555555443332 2234455666777777766654432210 00  0111111  


Q ss_pred             CCcCCCCChhhhhcCCCCCEEEeeccccccc----CchhhcCCCCCCeEeCCCCCCCCC----CcchhhhcCCCCCEEEc
Q 002574          272 ENSFNSAIPPWLFSLTSLTKLYLRWNFFTGH----IPNEFANLKLLEVLDLSNNLDLGG----QLPKLFGILRRLKSLDL  343 (906)
Q Consensus       272 ~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~L~~n~~~~~----~~~~~l~~l~~L~~L~L  343 (906)
                      .+       ...+.-++|+++...+|++...    +...|...+.|+.+.+..| .+..    .+...+..+++|+.|||
T Consensus       149 ~~-------kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl  220 (382)
T KOG1909|consen  149 VN-------KKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDL  220 (382)
T ss_pred             HH-------hccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeec
Confidence            11       1123346788888887776432    2345677789999999988 4432    12345677888888888


Q ss_pred             cCCcCCcccccccccCCCCCCCccEEECcCCCCCCccchhcc-----CCCCCceeeccCccccCC----CCccCCCCCCC
Q 002574          344 SANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLG-----NLKNLQYLRLSGNSFWGS----IPSSIGNLSSL  414 (906)
Q Consensus       344 s~n~l~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L  414 (906)
                      .+|-++......++.....+++|++|++++|.+...-..++.     ..++|+.|.+.+|.++..    +...+...+.|
T Consensus       221 ~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL  300 (382)
T KOG1909|consen  221 RDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDL  300 (382)
T ss_pred             ccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhh
Confidence            888877554444444334444677777777766644333221     235555555555554421    11122334444


Q ss_pred             CEEeCcCccC
Q 002574          415 RKLDLSYNGM  424 (906)
Q Consensus       415 ~~L~L~~n~~  424 (906)
                      ..|+|++|++
T Consensus       301 ~kLnLngN~l  310 (382)
T KOG1909|consen  301 EKLNLNGNRL  310 (382)
T ss_pred             HHhcCCcccc
Confidence            4444444444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=2.1e-10  Score=118.76  Aligned_cols=208  Identities=23%  Similarity=0.209  Sum_probs=103.5

Q ss_pred             CCCCCcEEEccCCcCCCCCCccCcCCCCcccEEECCCCcCCCC--ChhhhhcCCCCCEEEeecccccccCchh-hcCCCC
Q 002574          236 MLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSA--IPPWLFSLTSLTKLYLRWNFFTGHIPNE-FANLKL  312 (906)
Q Consensus       236 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~--~p~~l~~l~~L~~L~L~~n~~~~~~~~~-l~~l~~  312 (906)
                      ++.+|+++.|.++.+...+.......+++++.||||.|-+..-  +-....++++|+.|+++.|.+....... -..+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            3455555555555555444323345667777777777765532  2223456777777777777765322211 124556


Q ss_pred             CCeEeCCCCCCCCCC-cchhhhcCCCCCEEEccCCcCCcccccccccCCCCCCCccEEECcCCCCCCccc--hhccCCCC
Q 002574          313 LEVLDLSNNLDLGGQ-LPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELP--KSLGNLKN  389 (906)
Q Consensus       313 L~~L~L~~n~~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~p--~~l~~l~~  389 (906)
                      |+.|.++.| .++.. +...+..+|+|+.|++..|...........    .++.|++|+|++|.+.. .+  ...+.++.
T Consensus       199 lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~----i~~~L~~LdLs~N~li~-~~~~~~~~~l~~  272 (505)
T KOG3207|consen  199 LKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK----ILQTLQELDLSNNNLID-FDQGYKVGTLPG  272 (505)
T ss_pred             hheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchhh----hhhHHhhccccCCcccc-cccccccccccc
Confidence            666666666 44321 222334566666666666642111111111    12256666666666542 22  23455666


Q ss_pred             CceeeccCccccCC-CCcc-----CCCCCCCCEEeCcCccCCc-ccccchhccccCceeecCCCCcc
Q 002574          390 LQYLRLSGNSFWGS-IPSS-----IGNLSSLRKLDLSYNGMNG-TIPESFGKLSELVDANLLQNSWE  449 (906)
Q Consensus       390 L~~L~L~~n~l~~~-~p~~-----l~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~  449 (906)
                      |+.|+++.|.+... .|+.     ...+++|+.|++..|++.. ..-..+..+++|+.|.+..|.+.
T Consensus       273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            66666666655532 1221     2344556666666665531 01112333344444444444443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=3.2e-10  Score=117.45  Aligned_cols=142  Identities=25%  Similarity=0.198  Sum_probs=69.9

Q ss_pred             hcCCCCCcEEECCCccCCCCCcchHHHhcCCCCCcEEEccCCcCCCCCCccCcCCCCcccEEECCCCcCCCC-Chhhhhc
Q 002574          207 LSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSA-IPPWLFS  285 (906)
Q Consensus       207 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~-~p~~l~~  285 (906)
                      ...|++++.|||+.|-+.... .+.+-...+|+|+.|+++.|++........-.-++.|+.|.|+.|.++-. +-..+..
T Consensus       142 ~k~~~~v~~LdLS~NL~~nw~-~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~  220 (505)
T KOG3207|consen  142 SKILPNVRDLDLSRNLFHNWF-PVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT  220 (505)
T ss_pred             hhhCCcceeecchhhhHHhHH-HHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence            444555555555555554432 12333455666666666666665544433333455666666666655422 1112234


Q ss_pred             CCCCCEEEeecccccccCchhhcCCCCCCeEeCCCCCCCCCCcchhhhcCCCCCEEEccCCcCC
Q 002574          286 LTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLN  349 (906)
Q Consensus       286 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~  349 (906)
                      +|+|+.|++..|.....-.....-+..|+.|+|++|..+.-..-...+.++.|+.|+++.+.+.
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~  284 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIA  284 (505)
T ss_pred             CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcc
Confidence            5666666666664222222233344555666666653222222233445555555555555443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.94  E-value=2.9e-10  Score=111.58  Aligned_cols=136  Identities=26%  Similarity=0.326  Sum_probs=96.9

Q ss_pred             ccccCCCCCEEEccCCcCcccccHHHHhcCCCCcEEEccCCccccccCccccCCCCCCEEeCCCCcCCCCCCcccccccc
Q 002574          698 SLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSA  777 (906)
Q Consensus       698 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~  777 (906)
                      .+.....|+++|+++|.|+ .+...+.- ++.++.|++++|.+...  +.+..+++|+.||||+|.++ .+...-     
T Consensus       279 ~~dTWq~LtelDLS~N~I~-~iDESvKL-~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh-----  348 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNLIT-QIDESVKL-APKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWH-----  348 (490)
T ss_pred             ecchHhhhhhccccccchh-hhhhhhhh-ccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhH-----
Confidence            3444567788888888877 56665554 77888888888887733  23777888888999888876 222111     


Q ss_pred             cccCCCccchheeeeeeecCCCcccccccCcccEEEcCCCcccccCChhhhccCCCCEEeCcCCcccccc-cccccCCCC
Q 002574          778 LVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAI-PQSLSSLAS  856 (906)
Q Consensus       778 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~~l~~l~~  856 (906)
                                                ..+.+.+.|.|++|.+..  -..++++-+|..||++.|+|...- -.++++++-
T Consensus       349 --------------------------~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPC  400 (490)
T KOG1259|consen  349 --------------------------LKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPC  400 (490)
T ss_pred             --------------------------hhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccH
Confidence                                      112334778899988863  245788889999999999887432 356788999


Q ss_pred             CCeEeCcCCcccccC
Q 002574          857 LSKLNLSFNNLAGKI  871 (906)
Q Consensus       857 L~~L~ls~N~l~g~i  871 (906)
                      |+.+-+.+||+.+..
T Consensus       401 LE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  401 LETLRLTGNPLAGSV  415 (490)
T ss_pred             HHHHhhcCCCccccc
Confidence            999999999998543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.88  E-value=1.1e-09  Score=104.11  Aligned_cols=82  Identities=29%  Similarity=0.318  Sum_probs=14.3

Q ss_pred             CCCCcEEEccCCcCcccCCCCcc-CCCCccEEeCCCCcccccCCcCCCCCCCCCEEECcCCcccccccccc-ccCCCCCE
Q 002574          630 LEDLQILSIRSNKLSGEFPNCWY-HSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSL-QNCTGLTS  707 (906)
Q Consensus       630 l~~L~~L~Ls~n~l~~~~p~~l~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~  707 (906)
                      ...+++|+|.+|.|+. +. .+. .+.+|+.|++++|.|+..  +.+..++.|+.|++++|+++.. ...+ ..+++|++
T Consensus        18 ~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~   92 (175)
T PF14580_consen   18 PVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQE   92 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred             cccccccccccccccc-cc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCE
Confidence            3344555555555542 11 122 234444444444444432  1244444455555555554422 1122 23444455


Q ss_pred             EEccCCcCc
Q 002574          708 IDLGGNQLS  716 (906)
Q Consensus       708 L~L~~N~l~  716 (906)
                      |++++|++.
T Consensus        93 L~L~~N~I~  101 (175)
T PF14580_consen   93 LYLSNNKIS  101 (175)
T ss_dssp             EE-TTS---
T ss_pred             EECcCCcCC
Confidence            555444443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.88  E-value=4.8e-10  Score=110.11  Aligned_cols=131  Identities=31%  Similarity=0.347  Sum_probs=64.2

Q ss_pred             cCCCCCEEEccCCcCCcccccccccCCCCCCCccEEECcCCCCCCccchhccCCCCCceeeccCccccCCCCccCCCCCC
Q 002574          334 ILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSS  413 (906)
Q Consensus       334 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  413 (906)
                      ..+.|+++|+++|.|+.. .+...-.+    .++.|++++|.+.. + ..++.+++|+.|||++|.++.. ..+-..+-+
T Consensus       282 TWq~LtelDLS~N~I~~i-DESvKL~P----kir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGN  353 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQI-DESVKLAP----KLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGN  353 (490)
T ss_pred             hHhhhhhccccccchhhh-hhhhhhcc----ceeEEeccccceee-e-hhhhhcccceEeecccchhHhh-hhhHhhhcC
Confidence            344555555555555422 22222222    55555555555542 1 2255555555555555555422 122233445


Q ss_pred             CCEEeCcCccCCcccccchhccccCceeecCCCCccCCCChHHhhccccccEeecCCCCCc
Q 002574          414 LRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTK  474 (906)
Q Consensus       414 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~  474 (906)
                      +++|.|++|.+.  .-..+.++-+|..|++++|++...-....+++++-|+.+.+.+|++.
T Consensus       354 IKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  354 IKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             EeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            555555555552  22334455555555555555555444445555555555555555443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.86  E-value=2.7e-09  Score=101.54  Aligned_cols=104  Identities=27%  Similarity=0.290  Sum_probs=27.4

Q ss_pred             CCCCCcEEECCCccCCCCCcchHHHhc-CCCCCcEEEccCCcCCCCCCccCcCCCCcccEEECCCCcCCCCChhhh-hcC
Q 002574          209 GLSSLKLLNLGFVKLDHVGADWLQAVN-MLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWL-FSL  286 (906)
Q Consensus       209 ~l~~L~~L~l~~n~l~~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l-~~l  286 (906)
                      +..++++|++++|.++.+.     .++ .+.+|+.|++++|.++.+..   +..++.|++|++++|+++... ..+ ..+
T Consensus        17 n~~~~~~L~L~~n~I~~Ie-----~L~~~l~~L~~L~Ls~N~I~~l~~---l~~L~~L~~L~L~~N~I~~i~-~~l~~~l   87 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIE-----NLGATLDKLEVLDLSNNQITKLEG---LPGLPRLKTLDLSNNRISSIS-EGLDKNL   87 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S--TT-------TT--EEE--SS---S-C-HHHHHH-
T ss_pred             ccccccccccccccccccc-----chhhhhcCCCEEECCCCCCccccC---ccChhhhhhcccCCCCCCccc-cchHHhC
Confidence            3344555555555555432     233 34566666666666665543   555666777777777666432 233 346


Q ss_pred             CCCCEEEeecccccccC-chhhcCCCCCCeEeCCCC
Q 002574          287 TSLTKLYLRWNFFTGHI-PNEFANLKLLEVLDLSNN  321 (906)
Q Consensus       287 ~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~L~~n  321 (906)
                      ++|++|++++|++...- -..+..+++|++|++.+|
T Consensus        88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N  123 (175)
T PF14580_consen   88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN  123 (175)
T ss_dssp             TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred             CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence            67777777776665321 133455556666666655

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.76  E-value=7.5e-09  Score=123.40  Aligned_cols=162  Identities=27%  Similarity=0.296  Sum_probs=104.9

Q ss_pred             cccCCCCCCEEeCCCCCCCCCCCChhhhcCCCCCeeeccCCcCccCCCcCcCCCCCCcEEEccCCCCCCCcCCccccccc
Q 002574          124 SLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQN  203 (906)
Q Consensus       124 ~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~  203 (906)
                      .|..++.|++|||++|.-.+. +|+.++.|-+||||+++++.+. .+|..+++|++|.+|++..+......         
T Consensus       566 ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~---------  634 (889)
T KOG4658|consen  566 FFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI---------  634 (889)
T ss_pred             HHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccc---------
Confidence            467799999999999765554 9999999999999999999998 89999999999999999866432211         


Q ss_pred             hhhhcCCCCCcEEECCCccCCCCCcchHHHhcCCCCCcEEEccCCcCCCCCCccCcCCCCccc----EEECCCCcCCCCC
Q 002574          204 LNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSIS----VLDLSENSFNSAI  279 (906)
Q Consensus       204 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~----~L~Ls~n~~~~~~  279 (906)
                      ......|.+|++|.+..... .........+..+.+|+.+...........   .+..++.|.    .+.+.++... ..
T Consensus       635 ~~i~~~L~~Lr~L~l~~s~~-~~~~~~l~el~~Le~L~~ls~~~~s~~~~e---~l~~~~~L~~~~~~l~~~~~~~~-~~  709 (889)
T KOG4658|consen  635 PGILLELQSLRVLRLPRSAL-SNDKLLLKELENLEHLENLSITISSVLLLE---DLLGMTRLRSLLQSLSIEGCSKR-TL  709 (889)
T ss_pred             cchhhhcccccEEEeecccc-ccchhhHHhhhcccchhhheeecchhHhHh---hhhhhHHHHHHhHhhhhcccccc-ee
Confidence            11255688999998877652 222223445566666666666444331111   122222222    2222222222 23


Q ss_pred             hhhhhcCCCCCEEEeecccccc
Q 002574          280 PPWLFSLTSLTKLYLRWNFFTG  301 (906)
Q Consensus       280 p~~l~~l~~L~~L~L~~n~~~~  301 (906)
                      +..+..+.+|+.|.+.++.+..
T Consensus       710 ~~~~~~l~~L~~L~i~~~~~~e  731 (889)
T KOG4658|consen  710 ISSLGSLGNLEELSILDCGISE  731 (889)
T ss_pred             ecccccccCcceEEEEcCCCch
Confidence            4456677777777777777653

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.74  E-value=6.9e-09  Score=80.98  Aligned_cols=61  Identities=44%  Similarity=0.613  Sum_probs=56.6

Q ss_pred             CcccEEEcCCCcccccCChhhhccCCCCEEeCcCCcccccccccccCCCCCCeEeCcCCcc
Q 002574          807 ADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNL  867 (906)
Q Consensus       807 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l  867 (906)
                      ++|+.|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3568999999999977778999999999999999999988888999999999999999986

...

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.66  E-value=3e-08  Score=70.46  Aligned_cols=38  Identities=58%  Similarity=1.124  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHhhCC-CCCCCCCCCCC---CCCCCccceEec
Q 002574           47 DAEREGLLAFKESLT-DPSGRLSSWVG---QDCCKWNGVYCN   84 (906)
Q Consensus        47 ~~~~~~ll~~k~~~~-~~~~~l~~W~~---~~~c~w~gv~C~   84 (906)
                      ++|++||++||+++. +|.+.+.+|+.   .+||.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            579999999999997 57789999943   699999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.64  E-value=4.5e-09  Score=117.62  Aligned_cols=247  Identities=30%  Similarity=0.299  Sum_probs=112.4

Q ss_pred             cCCCCCeeeccCCcCccCCCcCcCCCCCCcEEEccCCCCCCCcCCccccccchhhhcCCCCCcEEECCCccCCCCCcchH
Q 002574          152 QLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWL  231 (906)
Q Consensus       152 ~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  231 (906)
                      .+..++.+++..|.+. .+-..+..+++|+.|++..|.+..+...          +..+++|++|++++|.|+.+.    
T Consensus        70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~i~~~----------l~~~~~L~~L~ls~N~I~~i~----  134 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEKIENL----------LSSLVNLQVLDLSFNKITKLE----  134 (414)
T ss_pred             HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchhhcccc----------hhhhhcchheecccccccccc----
Confidence            3444444555555444 2222344555555555555554432211          333444444444444444432    


Q ss_pred             HHhcCCCCCcEEEccCCcCCCCCCccCcCCCCcccEEECCCCcCCCCCh-hhhhcCCCCCEEEeecccccccCchhhcCC
Q 002574          232 QAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIP-PWLFSLTSLTKLYLRWNFFTGHIPNEFANL  310 (906)
Q Consensus       232 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p-~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l  310 (906)
                       .+..++.|+.|++.+|.++.+..   +..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+...        
T Consensus       135 -~l~~l~~L~~L~l~~N~i~~~~~---~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--------  201 (414)
T KOG0531|consen  135 -GLSTLTLLKELNLSGNLISDISG---LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--------  201 (414)
T ss_pred             -chhhccchhhheeccCcchhccC---CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--------
Confidence             33334445555555555544433   3334555555555555443222 1 23344444444444443321        


Q ss_pred             CCCCeEeCCCCCCCCCCcchhhhcCCCCCEEEccCCcCCcccccccccCCCCCCCccEEECcCCCCCCccchhccCCCCC
Q 002574          311 KLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNL  390 (906)
Q Consensus       311 ~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L  390 (906)
                                         ..+..+..+..+++..|.++...+.......    .|+.+++++|.+. ..+..+..++.+
T Consensus       202 -------------------~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~----~L~~l~l~~n~i~-~~~~~~~~~~~l  257 (414)
T KOG0531|consen  202 -------------------EGLDLLKKLVLLSLLDNKISKLEGLNELVML----HLRELYLSGNRIS-RSPEGLENLKNL  257 (414)
T ss_pred             -------------------cchHHHHHHHHhhcccccceeccCcccchhH----HHHHHhcccCccc-cccccccccccc
Confidence                               1122223333334444444332211100000    2566666666665 333445566666


Q ss_pred             ceeeccCccccCCCCccCCCCCCCCEEeCcCccCCcc---ccc-chhccccCceeecCCCCccCCC
Q 002574          391 QYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGT---IPE-SFGKLSELVDANLLQNSWEGIL  452 (906)
Q Consensus       391 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~---~~~-~~~~l~~L~~L~l~~n~l~~~~  452 (906)
                      ..+++.+|++...  ..+...+.+..+....+.+...   ... .....+.++...+..|......
T Consensus       258 ~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (414)
T KOG0531|consen  258 PVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS  321 (414)
T ss_pred             cccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence            6777776666533  2244445555556666654421   111 1445566666666666665543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.63  E-value=4.2e-09  Score=117.83  Aligned_cols=222  Identities=26%  Similarity=0.290  Sum_probs=106.9

Q ss_pred             cccceeeccccccccccCCCCCCCCCCCcEEEccCCcCcccCCCCccCCCCccEEeCCCCcccccCCcCCCCCCCCCEEE
Q 002574          606 MPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLL  685 (906)
Q Consensus       606 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  685 (906)
                      +.+++.|++.+|.|..+.. .+..+++|++|++++|.|+...+  +..++.|+.|++++|.|+..  ..+..+..|+.++
T Consensus        94 ~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~  168 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLD  168 (414)
T ss_pred             ccceeeeeccccchhhccc-chhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhhhccc
Confidence            4455555555555553321 13445555555555555553322  23334455555555555433  2334455555555


Q ss_pred             CcCCccccccc-cccccCCCCCEEEccCCcCcccccHHHHhcCCCCcEEEccCCccccccCccccCCC--CCCEEeCCCC
Q 002574          686 LSNNNLSGGIP-CSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQ--NLHIIDLSHN  762 (906)
Q Consensus       686 Ls~n~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~--~L~~L~Ls~N  762 (906)
                      +++|++...-+ . ...+.+++.+++++|.+. .+. ++.. +..+..+++..|.++..-+  +..+.  .|+.+++++|
T Consensus       169 l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~-~i~-~~~~-~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n  242 (414)
T KOG0531|consen  169 LSYNRIVDIENDE-LSELISLEELDLGGNSIR-EIE-GLDL-LKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGN  242 (414)
T ss_pred             CCcchhhhhhhhh-hhhccchHHHhccCCchh-ccc-chHH-HHHHHHhhcccccceeccC--cccchhHHHHHHhcccC
Confidence            55555553322 1 344555555555555544 111 1111 2333333455554442211  11111  2555555555


Q ss_pred             cCCCCCCcccccccccccCCCccchheeeeeeecCCCcccccccCcccEEEcCCCcccccCChhhhccCCCCEEeCcCCc
Q 002574          763 NFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQ  842 (906)
Q Consensus       763 ~l~~~ip~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~  842 (906)
                      ++. .++..+..                               +.++..||+++|++...-  .+.....+..+.++.|.
T Consensus       243 ~i~-~~~~~~~~-------------------------------~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~  288 (414)
T KOG0531|consen  243 RIS-RSPEGLEN-------------------------------LKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNK  288 (414)
T ss_pred             ccc-cccccccc-------------------------------cccccccchhhccccccc--cccccchHHHhccCcch
Confidence            554 22222222                               233466777777776432  24555666666666666


Q ss_pred             cccc---cccc-ccCCCCCCeEeCcCCcccccCC
Q 002574          843 LSGA---IPQS-LSSLASLSKLNLSFNNLAGKIP  872 (906)
Q Consensus       843 l~~~---ip~~-l~~l~~L~~L~ls~N~l~g~iP  872 (906)
                      +...   .... ......++.+++.+|+.....+
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  289 LALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             hcchhhhhccccccccccccccccccCccccccc
Confidence            5521   1111 4556777888888888777665

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.55  E-value=5.7e-08  Score=75.78  Aligned_cols=58  Identities=41%  Similarity=0.529  Sum_probs=28.1

Q ss_pred             ccEEeCCCCcccccCCcCCCCCCCCCEEECcCCccccccccccccCCCCCEEEccCCc
Q 002574          657 FWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQ  714 (906)
Q Consensus       657 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~  714 (906)
                      |++|++++|+++...++.|..+++|++|++++|.+....|..|.++++|+.|++++|+
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4444444444444444444555555555555555544444445555555555555544

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.55  E-value=7.4e-08  Score=115.06  Aligned_cols=79  Identities=39%  Similarity=0.516  Sum_probs=37.1

Q ss_pred             CccEEECcCCCCCCccchhccCCCCCceeeccCccccCCCCccCCCCCCCCEEeCcCccCCcccccchhccccCceeecC
Q 002574          365 NLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLL  444 (906)
Q Consensus       365 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~  444 (906)
                      .|+.|||++|.--+.+|..++.+-+|++|++++..+. .+|.+++++..|.+|++..+.....+|.....+.+|++|.+.
T Consensus       572 ~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~  650 (889)
T KOG4658|consen  572 LLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP  650 (889)
T ss_pred             ceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence            4444444444333344555555555555555555444 444445555555555554444333333444444444444443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=1.6e-09  Score=106.56  Aligned_cols=59  Identities=24%  Similarity=0.199  Sum_probs=39.8

Q ss_pred             CCCEEeCCCCCCCCCCCChhhhcCCCCCeeeccCCcCccCCCcCcCCCCCCcEEEccCC
Q 002574          130 YLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYAD  188 (906)
Q Consensus       130 ~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~ls~n  188 (906)
                      .|++||||...++...+-..++.+.+|+.|.|.++.+.+.+-..+++-.+|+.|+++.+
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~  244 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC  244 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence            47777777777665444455666777777777777777666666666677777777654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=1.9e-08  Score=99.15  Aligned_cols=181  Identities=23%  Similarity=0.162  Sum_probs=125.0

Q ss_pred             CcccEEECCCCcCCCC-ChhhhhcCCCCCEEEeecccccccCchhhcCCCCCCeEeCCCCCCCCCCc-chhhhcCCCCCE
Q 002574          263 TSISVLDLSENSFNSA-IPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQL-PKLFGILRRLKS  340 (906)
Q Consensus       263 ~~L~~L~Ls~n~~~~~-~p~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~l~~l~~L~~  340 (906)
                      +.|++||||...++.. +-..+..+.+|+.|.+.++++...+...+++-.+|+.|+++.+..++... .-.+.+|+.|..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            3588888888776532 23346778889999999998888888888888899999998886555432 234578889999


Q ss_pred             EEccCCcCCcccccccccCCCCCCCccEEECcCCCCC---CccchhccCCCCCceeeccCccc-cCCCCccCCCCCCCCE
Q 002574          341 LDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLE---GELPKSLGNLKNLQYLRLSGNSF-WGSIPSSIGNLSSLRK  416 (906)
Q Consensus       341 L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~l-~~~~p~~l~~l~~L~~  416 (906)
                      |++++|.+....-...-.  ...++|..|+++++.-.   ..+..-...+++|.+|||++|.. +......|.+++.|++
T Consensus       265 LNlsWc~l~~~~Vtv~V~--hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~  342 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVA--HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH  342 (419)
T ss_pred             cCchHhhccchhhhHHHh--hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence            999998776543221111  11237888899887421   12222345789999999998753 3333345678889999


Q ss_pred             EeCcCccCCccccc---chhccccCceeecCCCC
Q 002574          417 LDLSYNGMNGTIPE---SFGKLSELVDANLLQNS  447 (906)
Q Consensus       417 L~L~~n~~~~~~~~---~~~~l~~L~~L~l~~n~  447 (906)
                      |.++.|..  .+|+   .+...+.|.+|++.++-
T Consensus       343 lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  343 LSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             eehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            99988864  3454   45667889999887754

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.25  E-value=1.7e-08  Score=110.75  Aligned_cols=126  Identities=30%  Similarity=0.271  Sum_probs=88.7

Q ss_pred             CCCEEEccCCcCcccccHHHHhcCCCCcEEEccCCccccccCccccCCCCCCEEeCCCCcCCCCCCcc-cccccccccCC
Q 002574          704 GLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRC-IGNLSALVYGN  782 (906)
Q Consensus       704 ~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~~l~~L~~~~  782 (906)
                      .|.+.+.++|++. .+...+.- ++.++.|+|++|+++..-  .+..++.|+.|||++|.+. .+|.- ...+       
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLql-l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-------  232 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQL-LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-------  232 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHH-HHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-------
Confidence            5777778888876 55555543 778888888888887553  6777888888888888886 44421 1111       


Q ss_pred             CccchheeeeeeecCCCcccccccCcccEEEcCCCcccccCChhhhccCCCCEEeCcCCccccccc-ccccCCCCCCeEe
Q 002574          783 NSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIP-QSLSSLASLSKLN  861 (906)
Q Consensus       783 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip-~~l~~l~~L~~L~  861 (906)
                                               .|..|.+++|.++..  ..+.+|++|+-||+|+|-|++.-. .-+..|.+|..|+
T Consensus       233 -------------------------~L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~  285 (1096)
T KOG1859|consen  233 -------------------------KLQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLW  285 (1096)
T ss_pred             -------------------------hheeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHh
Confidence                                     136788888888743  357888888899999988875321 1245567888888


Q ss_pred             CcCCccc
Q 002574          862 LSFNNLA  868 (906)
Q Consensus       862 ls~N~l~  868 (906)
                      |.+||+.
T Consensus       286 LeGNPl~  292 (1096)
T KOG1859|consen  286 LEGNPLC  292 (1096)
T ss_pred             hcCCccc
Confidence            8888885

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=6.5e-07  Score=88.57  Aligned_cols=62  Identities=24%  Similarity=0.289  Sum_probs=34.0

Q ss_pred             CCCCcccEEECCCCcCCCCChhhhhcCCCCCEEEeeccccccc-CchhhcCCCCCCeEeCCCC
Q 002574          260 INFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGH-IPNEFANLKLLEVLDLSNN  321 (906)
Q Consensus       260 ~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~L~~n  321 (906)
                      .++|.|++|+++.|.+...+-..-....+|+.|-|.+..+.-. ....+..+|.++.|+++.|
T Consensus        94 e~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen   94 EQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             hcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence            3455555555555555433221113456788888777665422 2233456667777777766

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.17  E-value=2.2e-07  Score=90.61  Aligned_cols=37  Identities=27%  Similarity=0.311  Sum_probs=18.6

Q ss_pred             CCCCCCEEeCCCCCCCCCC---CChhhhcCCCCCeeeccC
Q 002574          127 HLKYLDTLDLSLNDFEGAE---IPEYFGQLKNLRYLNLSF  163 (906)
Q Consensus       127 ~l~~L~~L~Ls~n~~~~~~---lp~~l~~l~~L~~L~Ls~  163 (906)
                      .+..++.+|||+|.|....   +...+.+-.+|+..+++.
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd   67 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD   67 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh
Confidence            3455566666666655431   222344445556555554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.08  E-value=1.3e-07  Score=104.18  Aligned_cols=58  Identities=38%  Similarity=0.342  Sum_probs=26.5

Q ss_pred             CceeeccCccccCCCCccCCCCCCCCEEeCcCccCCccc-ccchhccccCceeecCCCCcc
Q 002574          390 LQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTI-PESFGKLSELVDANLLQNSWE  449 (906)
Q Consensus       390 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~  449 (906)
                      |+.|.+++|.++..  .++.++.+|+.||+++|-+.+.- -.-+..+..|+.|++.+|++-
T Consensus       234 L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  234 LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            45555555544422  22445555555555555444311 112334445555555555543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.07  E-value=3.9e-07  Score=79.68  Aligned_cols=56  Identities=30%  Similarity=0.520  Sum_probs=27.8

Q ss_pred             cEEEcCCCcccccCChhhhccCCCCEEeCcCCcccccccccccCCCCCCeEeCcCCcc
Q 002574          810 NSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNL  867 (906)
Q Consensus       810 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l  867 (906)
                      +.|+|++|.++ .+|+++..++.|+.|+++.|.+. ..|+.+..|.+|-+|+..+|.+
T Consensus        80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen   80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENAR  135 (177)
T ss_pred             hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCcc
Confidence            44555555554 44555555555555555555554 2344444455555555444443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.06  E-value=3.6e-07  Score=79.88  Aligned_cols=66  Identities=21%  Similarity=0.248  Sum_probs=36.7

Q ss_pred             cEEEcCCCcccccCChhhhccCCCCEEeCcCCcccccccccccCCCCCCeEeCcCCcccccCCCC-CCC
Q 002574          810 NSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSL-PNF  877 (906)
Q Consensus       810 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~  877 (906)
                      +.|+++.|.+. ..|+.+..|.++-.||..+|.+. .||..+---+.....++.++++.+.-|.+ +.|
T Consensus       103 r~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klqa~  169 (177)
T KOG4579|consen  103 RSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQAL  169 (177)
T ss_pred             hhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccccc
Confidence            45666666665 44555666666666666666665 44443322223333445666777666655 444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.04  E-value=2.3e-06  Score=83.67  Aligned_cols=93  Identities=20%  Similarity=0.168  Sum_probs=43.0

Q ss_pred             hcCCCCCcEEECCCccCCCCCcchH-HHhcCCCCCcEEEccCCcCCCCCC---------ccCcCCCCcccEEECCCCcCC
Q 002574          207 LSGLSSLKLLNLGFVKLDHVGADWL-QAVNMLPSLVELRLHYCQLQGIPL---------SLPFINFTSISVLDLSENSFN  276 (906)
Q Consensus       207 l~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~---------~~~~~~l~~L~~L~Ls~n~~~  276 (906)
                      +..+..++.+++++|.+..-...|+ ..+..-.+|+..+++.-.......         ..++..|+.|+..+||.|.+.
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            4446666666666666655433333 233444555555544432111100         012344555555555555555


Q ss_pred             CCChhhh----hcCCCCCEEEeecccc
Q 002574          277 SAIPPWL----FSLTSLTKLYLRWNFF  299 (906)
Q Consensus       277 ~~~p~~l----~~l~~L~~L~L~~n~~  299 (906)
                      ...|+.+    +.-+.|++|.+++|.+
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCC
Confidence            4444332    2334555555555543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.92  E-value=2.4e-06  Score=84.72  Aligned_cols=87  Identities=28%  Similarity=0.259  Sum_probs=51.0

Q ss_pred             CCCCCCEEeCCCCCCCCC-CCChhhhcCCCCCeeeccCCcCccCCCcCcCCCCCCcEEEccCCCCCCCcCCccccccchh
Q 002574          127 HLKYLDTLDLSLNDFEGA-EIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLN  205 (906)
Q Consensus       127 ~l~~L~~L~Ls~n~~~~~-~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~  205 (906)
                      ..++++.+||.+|.++.. .+-.-+.+|++|++|+|+.|.+...+-..-..+.+|++|-|.+..+......        +
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~--------s  140 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQST--------S  140 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhh--------h
Confidence            456777778877777654 1233445677778888877766533221113456777777776654332111        1


Q ss_pred             hhcCCCCCcEEECCCc
Q 002574          206 WLSGLSSLKLLNLGFV  221 (906)
Q Consensus       206 ~l~~l~~L~~L~l~~n  221 (906)
                      .+..++.++.|.++.|
T Consensus       141 ~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  141 SLDDLPKVTELHMSDN  156 (418)
T ss_pred             hhhcchhhhhhhhccc
Confidence            2556666666666666

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.85  E-value=7.6e-07  Score=92.44  Aligned_cols=283  Identities=18%  Similarity=0.130  Sum_probs=139.6

Q ss_pred             CCCEEeCCCCCCCCC-CCChhhhcCCCCCeeeccCCc-CccCCCcCc-CCCCCCcEEEccCCCCCCCcCCccccccchhh
Q 002574          130 YLDTLDLSLNDFEGA-EIPEYFGQLKNLRYLNLSFSS-FSGEIPPQL-GSLSSLQYLDLYADSFSSNSGSLALHAQNLNW  206 (906)
Q Consensus       130 ~L~~L~Ls~n~~~~~-~lp~~l~~l~~L~~L~Ls~n~-~~~~~p~~l-~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~  206 (906)
                      .|+.|.+.++.-.+. .+-..-..++++++|++.+|. ++...-.++ ..+++|++|++..|..        +....++.
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~--------iT~~~Lk~  210 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSS--------ITDVSLKY  210 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccch--------hHHHHHHH
Confidence            455566665543322 122233455666666666653 222211222 3456666666654321        01111221


Q ss_pred             -hcCCCCCcEEECCCcc-CCCCCcchHHHhcCCCCCcEEEccCCcCCCCCC-ccCcCCCCcccEEECCCCcCCCCCh--h
Q 002574          207 -LSGLSSLKLLNLGFVK-LDHVGADWLQAVNMLPSLVELRLHYCQLQGIPL-SLPFINFTSISVLDLSENSFNSAIP--P  281 (906)
Q Consensus       207 -l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~Ls~n~~~~~~p--~  281 (906)
                       -..+++|++++++|+. +++.  .+-.....+..++.+.+.+|.-.+... ...-..+.-+..+++..|.......  .
T Consensus       211 la~gC~kL~~lNlSwc~qi~~~--gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~  288 (483)
T KOG4341|consen  211 LAEGCRKLKYLNLSWCPQISGN--GVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL  288 (483)
T ss_pred             HHHhhhhHHHhhhccCchhhcC--cchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH
Confidence             2356666666666663 2221  111223344555555555542221110 0001223334455544543211111  1


Q ss_pred             hhhcCCCCCEEEeecccccccCc-hhh-cCCCCCCeEeCCCCCCCCCCcchhhh-cCCCCCEEEccCCcCCccccccccc
Q 002574          282 WLFSLTSLTKLYLRWNFFTGHIP-NEF-ANLKLLEVLDLSNNLDLGGQLPKLFG-ILRRLKSLDLSANNLNGEVHEFFDG  358 (906)
Q Consensus       282 ~l~~l~~L~~L~L~~n~~~~~~~-~~l-~~l~~L~~L~L~~n~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~  358 (906)
                      .-..+..|++|+.+++...+..+ .++ .+..+|++|.++.|..++..-...++ +++.|+.+++..+.....  ..+..
T Consensus       289 i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d--~tL~s  366 (483)
T KOG4341|consen  289 IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD--GTLAS  366 (483)
T ss_pred             HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh--hhHhh
Confidence            11235667777776665422211 122 35677777777777555544444443 466777777777654322  24555


Q ss_pred             CCCCCCCccEEECcCCCCCCcc-----chhccCCCCCceeeccCccccC-CCCccCCCCCCCCEEeCcCccC
Q 002574          359 FSGRPNNLEYLDLSSNSLEGEL-----PKSLGNLKNLQYLRLSGNSFWG-SIPSSIGNLSSLRKLDLSYNGM  424 (906)
Q Consensus       359 l~~~~~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~~  424 (906)
                      +....+.|+.+.+++|......     ...-..+..|+.+.++++.... ..-+.+..+++|+.+++-+++-
T Consensus       367 ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  367 LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence            5566667888888877543211     1112345678888888886542 2234466778888888877753

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.76  E-value=2.1e-06  Score=89.21  Aligned_cols=279  Identities=20%  Similarity=0.124  Sum_probs=171.2

Q ss_pred             CCCCeeeccCCcCccCC--CcCcCCCCCCcEEEccCCCCCCCcCCccccccchh-hhcCCCCCcEEECCCc-cCCCCCcc
Q 002574          154 KNLRYLNLSFSSFSGEI--PPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLN-WLSGLSSLKLLNLGFV-KLDHVGAD  229 (906)
Q Consensus       154 ~~L~~L~Ls~n~~~~~~--p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~n-~l~~~~~~  229 (906)
                      ..|+.|.+.++.-.+.-  -....+++++++|.+.++....        ...+. .-..+++|+++++..+ .+++..  
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iT--------d~s~~sla~~C~~l~~l~L~~c~~iT~~~--  207 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKIT--------DSSLLSLARYCRKLRHLNLHSCSSITDVS--  207 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceecc--------HHHHHHHHHhcchhhhhhhcccchhHHHH--
Confidence            46888888888544322  2334678999999998876221        11111 2346899999999884 444432  


Q ss_pred             hHH-HhcCCCCCcEEEccCC-cCCCCCCccCcCCCCcccEEECCCCcCCCCChhhh----hcCCCCCEEEeecccccccC
Q 002574          230 WLQ-AVNMLPSLVELRLHYC-QLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWL----FSLTSLTKLYLRWNFFTGHI  303 (906)
Q Consensus       230 ~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l----~~l~~L~~L~L~~n~~~~~~  303 (906)
                       +. ....+++|++|++++| ++++-.....+.++..++.+.+.+|.-.+  -..+    +.+..+.++++..+......
T Consensus       208 -Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~  284 (483)
T KOG4341|consen  208 -LKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDE  284 (483)
T ss_pred             -HHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccch
Confidence             22 3346899999999998 34443322335566777777777764221  1222    23455777776666432221


Q ss_pred             c--hhhcCCCCCCeEeCCCCCCCCCCcchhh-hcCCCCCEEEccCCcC-CcccccccccCCCCCCCccEEECcCCCCCC-
Q 002574          304 P--NEFANLKLLEVLDLSNNLDLGGQLPKLF-GILRRLKSLDLSANNL-NGEVHEFFDGFSGRPNNLEYLDLSSNSLEG-  378 (906)
Q Consensus       304 ~--~~l~~l~~L~~L~L~~n~~~~~~~~~~l-~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~-  378 (906)
                      .  ..=..+..||+|+.+++..++...-..+ .++.+|+.|.++.++- +..   .|..+....+.|+.+++..+.... 
T Consensus       285 ~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~---~ft~l~rn~~~Le~l~~e~~~~~~d  361 (483)
T KOG4341|consen  285 DLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR---GFTMLGRNCPHLERLDLEECGLITD  361 (483)
T ss_pred             HHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh---hhhhhhcCChhhhhhcccccceehh
Confidence            1  1114578899999999866555444444 4678899999988863 322   222333445589999998886532 


Q ss_pred             -ccchhccCCCCCceeeccCccccCCC-----CccCCCCCCCCEEeCcCccCCc-ccccchhccccCceeecCCCCc
Q 002574          379 -ELPKSLGNLKNLQYLRLSGNSFWGSI-----PSSIGNLSSLRKLDLSYNGMNG-TIPESFGKLSELVDANLLQNSW  448 (906)
Q Consensus       379 -~~p~~l~~l~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l  448 (906)
                       .+...-.+++.|+.+.+++|......     ...-..+..|+.+.+++++... ..-+.+..++.|+.+++.+++-
T Consensus       362 ~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  362 GTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             hhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence             12222346788999999988643221     1222456678888888886542 3445566777888877777653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.75  E-value=1.5e-05  Score=93.14  Aligned_cols=107  Identities=25%  Similarity=0.319  Sum_probs=67.7

Q ss_pred             CCCcEEECCCccCCCCCcchHHHhcC-CCCCcEEEccCCcCCCCCCccCcCCCCcccEEECCCCcCCCCChhhhhcCCCC
Q 002574          211 SSLKLLNLGFVKLDHVGADWLQAVNM-LPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSL  289 (906)
Q Consensus       211 ~~L~~L~l~~n~l~~~~~~~~~~l~~-l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L  289 (906)
                      .+|++|++++..  ....+|+..++. +|.|+.|.+.+-.+..........++++|..||+|+..++..  .+++++++|
T Consensus       122 ~nL~~LdI~G~~--~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknL  197 (699)
T KOG3665|consen  122 QNLQHLDISGSE--LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNL  197 (699)
T ss_pred             HhhhhcCccccc--hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccH
Confidence            455666665532  224566666654 678888887776654433223356777888888888777644  567778888


Q ss_pred             CEEEeecccccc-cCchhhcCCCCCCeEeCCCC
Q 002574          290 TKLYLRWNFFTG-HIPNEFANLKLLEVLDLSNN  321 (906)
Q Consensus       290 ~~L~L~~n~~~~-~~~~~l~~l~~L~~L~L~~n  321 (906)
                      +.|.+.+-.+.. ..-..+.++++|++||+|..
T Consensus       198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             HHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence            888777666543 22234566777777777765

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.75  E-value=5.8e-05  Score=81.00  Aligned_cols=162  Identities=17%  Similarity=0.236  Sum_probs=86.9

Q ss_pred             cCCCCccEEeCCCCcccccCCcCCCCCCCCCEEECcCCccccccccccccCCCCCEEEccCCcCcccccHHHHhcCCCCc
Q 002574          652 YHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFF  731 (906)
Q Consensus       652 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~  731 (906)
                      ..+..++.|++++|.++. +|. +  ..+|+.|.+++|.-...+|+.+  .++|+.|++++|.....+|       .+|+
T Consensus        49 ~~~~~l~~L~Is~c~L~s-LP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-------~sLe  115 (426)
T PRK15386         49 EEARASGRLYIKDCDIES-LPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-------ESVR  115 (426)
T ss_pred             HHhcCCCEEEeCCCCCcc-cCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-------cccc
Confidence            345777788888887663 341 1  2357778887765444566544  2467777777773222343       3455


Q ss_pred             EEEccCCccc--cccCccccCCCCCCEEeCCCCcCCCCCCcccccccccccCCCccchheeeeeeecCCCcccccccCcc
Q 002574          732 MLRLRSNLLS--GDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADV  809 (906)
Q Consensus       732 ~L~L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  809 (906)
                      .|+++++...  +.+|.      +|+.|.+.+++..  .+..+.                             ...+++|
T Consensus       116 ~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~--~~~~lp-----------------------------~~LPsSL  158 (426)
T PRK15386        116 SLEIKGSATDSIKNVPN------GLTSLSINSYNPE--NQARID-----------------------------NLISPSL  158 (426)
T ss_pred             eEEeCCCCCcccccCcc------hHhheeccccccc--cccccc-----------------------------cccCCcc
Confidence            5666554432  12222      3445554332210  000000                             0123567


Q ss_pred             cEEEcCCCcccccCChhhhccCCCCEEeCcCCcc------cccccccccCCCCCCeEeCcCCcc
Q 002574          810 NSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQL------SGAIPQSLSSLASLSKLNLSFNNL  867 (906)
Q Consensus       810 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l------~~~ip~~l~~l~~L~~L~ls~N~l  867 (906)
                      +.|++++|... ..|+.+.  .+|+.|+++.|..      ...+|+.+ .+....++.++.+.+
T Consensus       159 k~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~f  218 (426)
T PRK15386        159 KTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSPDVF  218 (426)
T ss_pred             cEEEecCCCcc-cCccccc--ccCcEEEecccccccccCccccccccc-EechhhhcccCHHHh
Confidence            89999998876 4455444  5889999988732      22456555 444444444444444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.73  E-value=2.8e-05  Score=55.31  Aligned_cols=37  Identities=43%  Similarity=0.703  Sum_probs=24.2

Q ss_pred             cccEEEcCCCcccccCChhhhccCCCCEEeCcCCcccc
Q 002574          808 DVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSG  845 (906)
Q Consensus       808 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  845 (906)
                      +|+.|++++|+++ .+|..++++++|+.|++++|+++.
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            4567777777777 455567777777777777777763

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.62  E-value=4.6e-05  Score=54.18  Aligned_cols=37  Identities=43%  Similarity=0.634  Sum_probs=32.2

Q ss_pred             CCCCEEeCcCCcccccccccccCCCCCCeEeCcCCccc
Q 002574          831 SALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLA  868 (906)
Q Consensus       831 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  868 (906)
                      ++|++|++++|+++ .+|..+.+|+.|++|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            57999999999999 56777999999999999999997

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.58  E-value=0.0002  Score=76.92  Aligned_cols=14  Identities=14%  Similarity=0.152  Sum_probs=7.8

Q ss_pred             CCCCEEeCCCCcCC
Q 002574          752 QNLHIIDLSHNNFS  765 (906)
Q Consensus       752 ~~L~~L~Ls~N~l~  765 (906)
                      ++|++|++++|...
T Consensus       156 sSLk~L~Is~c~~i  169 (426)
T PRK15386        156 PSLKTLSLTGCSNI  169 (426)
T ss_pred             CcccEEEecCCCcc
Confidence            35666666655543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.54  E-value=3.1e-05  Score=90.51  Aligned_cols=150  Identities=26%  Similarity=0.276  Sum_probs=93.8

Q ss_pred             CCCCeEeCCCCCCCCCCcchhhh-cCCCCCEEEccCCcCCcccccccccCCCCCCCccEEECcCCCCCCccchhccCCCC
Q 002574          311 KLLEVLDLSNNLDLGGQLPKLFG-ILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKN  389 (906)
Q Consensus       311 ~~L~~L~L~~n~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~  389 (906)
                      .+|++|++++...+...-|..++ .+|.|+.|.+.+-.+...   .|..+...+|+|..||+++.+++..  ..++++++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~---dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lkn  196 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND---DFSQLCASFPNLRSLDISGTNISNL--SGISRLKN  196 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch---hHHHHhhccCccceeecCCCCccCc--HHHhcccc
Confidence            56788888877554444444443 478888888887665432   2445555666888888888888743  67788888


Q ss_pred             CceeeccCccccC-CCCccCCCCCCCCEEeCcCccCCccc--c----cchhccccCceeecCCCCccCCCChHHhhcccc
Q 002574          390 LQYLRLSGNSFWG-SIPSSIGNLSSLRKLDLSYNGMNGTI--P----ESFGKLSELVDANLLQNSWEGILQESQFMNLKR  462 (906)
Q Consensus       390 L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~~~~~~--~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  462 (906)
                      |+.|.+.+=.+.. ..-..+.++++|+.||+|........  .    +.-..+|+|+.||.+++.+...+-+.....-++
T Consensus       197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~  276 (699)
T KOG3665|consen  197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPN  276 (699)
T ss_pred             HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCcc
Confidence            8888887766653 11234667888888888877554221  1    122346777777777666655443333333334


Q ss_pred             ccE
Q 002574          463 LES  465 (906)
Q Consensus       463 L~~  465 (906)
                      |+.
T Consensus       277 L~~  279 (699)
T KOG3665|consen  277 LQQ  279 (699)
T ss_pred             Hhh
Confidence            433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.28  E-value=0.00036  Score=65.98  Aligned_cols=83  Identities=20%  Similarity=0.227  Sum_probs=42.9

Q ss_pred             CCceeeccCccccCCCCccCCCCCCCCEEeCcCccCCcccccchhccccCceeecCCCCccCCCChHHhhccccccEeec
Q 002574          389 NLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRL  468 (906)
Q Consensus       389 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  468 (906)
                      ....+||++|.+...  ..|..++.|.+|.+.+|+|+...|.--.-++.|..|.+.+|++........+..+++|++|.+
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            344455555554321  224455555555555555554444433344555555555555554444445566666666666


Q ss_pred             CCCCC
Q 002574          469 TTEPT  473 (906)
Q Consensus       469 ~~n~~  473 (906)
                      -+|+.
T Consensus       121 l~Npv  125 (233)
T KOG1644|consen  121 LGNPV  125 (233)
T ss_pred             cCCch
Confidence            66643

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.25  E-value=0.00028  Score=69.74  Aligned_cols=122  Identities=22%  Similarity=0.189  Sum_probs=78.6

Q ss_pred             ccccccccCCCCCCEEeCCCCCCCCCCCChhhhcCCCCCeeeccCC--cCccCCCcCcCCCCCCcEEEccCCCCCCCcCC
Q 002574          119 GKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFS--SFSGEIPPQLGSLSSLQYLDLYADSFSSNSGS  196 (906)
Q Consensus       119 ~~l~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n--~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~  196 (906)
                      |.+..-...+..|+.|++.+..++..   ..+-.|++|++|.++.|  .+++.++.-...+++|++|++++|++..+   
T Consensus        33 g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l---  106 (260)
T KOG2739|consen   33 GKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL---  106 (260)
T ss_pred             CCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc---
Confidence            44544455566677777777766643   23446889999999999  66667776667779999999998887653   


Q ss_pred             ccccccchhhhcCCCCCcEEECCCccCCCCCcchHHHhcCCCCCcEEEccCCcCC
Q 002574          197 LALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQ  251 (906)
Q Consensus       197 ~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~  251 (906)
                           ..+.-+..+.+|..|++..|..+.....--..+.-+++|++|+-....-.
T Consensus       107 -----stl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~  156 (260)
T KOG2739|consen  107 -----STLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGE  156 (260)
T ss_pred             -----cccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCc
Confidence                 22333666777777777777666643332334444566666655444333

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.11  E-value=0.00047  Score=65.23  Aligned_cols=84  Identities=24%  Similarity=0.225  Sum_probs=49.3

Q ss_pred             CCCEEeCCCCCCCCCCCChhhhcCCCCCeeeccCCcCccCCCcCcCCCCCCcEEEccCCCCCCCcCCccccccchhhhcC
Q 002574          130 YLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSG  209 (906)
Q Consensus       130 ~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~l~~  209 (906)
                      ....+||+.|.+...   ..|..+++|..|.+++|.|+..-|.--.-+++|++|.+.+|.+....        ++..+..
T Consensus        43 ~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~--------dl~pLa~  111 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELG--------DLDPLAS  111 (233)
T ss_pred             ccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhh--------hcchhcc
Confidence            455677777777532   34667777788888888777544443334566777777777665432        2222444


Q ss_pred             CCCCcEEECCCccCC
Q 002574          210 LSSLKLLNLGFVKLD  224 (906)
Q Consensus       210 l~~L~~L~l~~n~l~  224 (906)
                      +++|++|.+-+|.++
T Consensus       112 ~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen  112 CPKLEYLTLLGNPVE  126 (233)
T ss_pred             CCccceeeecCCchh
Confidence            445555554444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.92  E-value=0.0021  Score=58.86  Aligned_cols=105  Identities=22%  Similarity=0.293  Sum_probs=35.8

Q ss_pred             CCCCCCCcEEEccCCcCcccCCCCccCCCCccEEeCCCCcccccCCcCCCCCCCCCEEECcCCccccccccccccCCCCC
Q 002574          627 VCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLT  706 (906)
Q Consensus       627 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  706 (906)
                      |.++++|+.+.+.. .+...-..+|.+++.|+.+.+.++ +.......|.++++++.+.+.+ .+.......|..+++|+
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            34444444444442 233233334444444444444442 3333333444444455555543 22222233344455555


Q ss_pred             EEEccCCcCcccccHHHHhcCCCCcEEEccC
Q 002574          707 SIDLGGNQLSGSLPLWISENLSSFFMLRLRS  737 (906)
Q Consensus       707 ~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~  737 (906)
                      .+++..+ +. .++...+.+. .++.+.+.+
T Consensus        85 ~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   85 NIDIPSN-IT-EIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             EEEETTT--B-EEHTTTTTT--T--EEE-TT
T ss_pred             ccccCcc-cc-EEchhhhcCC-CceEEEECC
Confidence            5555433 22 3333333333 445554443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.90  E-value=0.002  Score=59.04  Aligned_cols=108  Identities=17%  Similarity=0.206  Sum_probs=47.9

Q ss_pred             chhhcccccceeeccccccccccCCCCCCCCCCCcEEEccCCcCcccCCCCccCCCCccEEeCCCCcccccCCcCCCCCC
Q 002574          600 ENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLR  679 (906)
Q Consensus       600 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  679 (906)
                      +..+....+++.+.+.. .+..+....|.++++|+.+.+.++ +...-..+|.++++++.+.+.+ .+.......|..++
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence            33444455566665553 344444555666666666666554 4434445556665666666654 33333344566666


Q ss_pred             CCCEEECcCCccccccccccccCCCCCEEEccC
Q 002574          680 SLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGG  712 (906)
Q Consensus       680 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  712 (906)
                      +|+.+++..+ +.......|.++ +|+.+.+..
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            6666666544 333334445555 666666554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.45  E-value=0.0017  Score=64.38  Aligned_cols=83  Identities=20%  Similarity=0.144  Sum_probs=38.3

Q ss_pred             CCCCccEEeCCCC--cccccCCcCCCCCCCCCEEECcCCccccc-cccccccCCCCCEEEccCCcCcccc--cHHHHhcC
Q 002574          653 HSQMFWGIDISNN--SLTGSIPSSFGSLRSLSVLLLSNNNLSGG-IPCSLQNCTGLTSIDLGGNQLSGSL--PLWISENL  727 (906)
Q Consensus       653 ~~~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~--p~~~~~~l  727 (906)
                      .+++|++|.++.|  ++.+.++.....+++|++|++++|++.-. .-..+..+.+|..|++.+|..+..-  -..++.-+
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll  142 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL  142 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence            3444444555555  33333333333445555555555555410 0011344455666666666555311  11233346


Q ss_pred             CCCcEEEc
Q 002574          728 SSFFMLRL  735 (906)
Q Consensus       728 ~~L~~L~L  735 (906)
                      ++|++|+-
T Consensus       143 ~~L~~LD~  150 (260)
T KOG2739|consen  143 PSLKYLDG  150 (260)
T ss_pred             hhhccccc
Confidence            66666653

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.25  E-value=0.00031  Score=69.41  Aligned_cols=105  Identities=22%  Similarity=0.228  Sum_probs=74.5

Q ss_pred             CCCCCCEEeCCCCCCCCCCCChhhhcCCCCCeeeccCCcCccCCCcCcCCCCCCcEEEccCCCCCCCcCCccccccchhh
Q 002574          127 HLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNW  206 (906)
Q Consensus       127 ~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~  206 (906)
                      .+.+.+.|+.-+|.+.+.   ....+++.|++|.||-|+|+..-  .+..|++|+.|+|..|.|..+        ..+.+
T Consensus        17 dl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sl--------dEL~Y   83 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESL--------DELEY   83 (388)
T ss_pred             HHHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccH--------HHHHH
Confidence            466778889999998865   34568899999999999987433  377888999999988887664        34566


Q ss_pred             hcCCCCCcEEECCCccCCCCCcchH--HHhcCCCCCcEEE
Q 002574          207 LSGLSSLKLLNLGFVKLDHVGADWL--QAVNMLPSLVELR  244 (906)
Q Consensus       207 l~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~l~~L~~L~  244 (906)
                      +.++++|+.|.|..|.-.+..+.-.  ..+..+|+|++||
T Consensus        84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            8888888888888876655432211  2334455555554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.15  E-value=0.00032  Score=69.39  Aligned_cols=79  Identities=27%  Similarity=0.272  Sum_probs=32.8

Q ss_pred             CCCCCcEEEccCCcCCCCCCccCcCCCCcccEEECCCCcCCCCC-hhhhhcCCCCCEEEeecccccccCch-----hhcC
Q 002574          236 MLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAI-PPWLFSLTSLTKLYLRWNFFTGHIPN-----EFAN  309 (906)
Q Consensus       236 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~-p~~l~~l~~L~~L~L~~n~~~~~~~~-----~l~~  309 (906)
                      +++.|++|.|+-|.|+.+.+   +..|++|++|+|..|.|...- -.-+.++++|+.|.|..|.-.+.-+.     .+.-
T Consensus        39 kMp~lEVLsLSvNkIssL~p---l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~  115 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLAP---LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV  115 (388)
T ss_pred             hcccceeEEeeccccccchh---HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence            34444444444444444333   444444444444444443210 01233444555555544443333221     2334


Q ss_pred             CCCCCeEe
Q 002574          310 LKLLEVLD  317 (906)
Q Consensus       310 l~~L~~L~  317 (906)
                      +++|+.||
T Consensus       116 LPnLkKLD  123 (388)
T KOG2123|consen  116 LPNLKKLD  123 (388)
T ss_pred             cccchhcc
Confidence            55555554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.11  E-value=0.00065  Score=78.45  Aligned_cols=10  Identities=50%  Similarity=0.461  Sum_probs=5.7

Q ss_pred             CCEEeCcCcc
Q 002574          414 LRKLDLSYNG  423 (906)
Q Consensus       414 L~~L~L~~n~  423 (906)
                      ++.|+++.+.
T Consensus       403 l~~L~l~~~~  412 (482)
T KOG1947|consen  403 LRVLNLSDCR  412 (482)
T ss_pred             cceEecccCc
Confidence            5556665554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.76  E-value=0.0027  Score=73.28  Aligned_cols=36  Identities=28%  Similarity=0.376  Sum_probs=15.6

Q ss_pred             CCCCcEEEccCC-cCCCCCCccCcCCCCcccEEECCC
Q 002574          237 LPSLVELRLHYC-QLQGIPLSLPFINFTSISVLDLSE  272 (906)
Q Consensus       237 l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~Ls~  272 (906)
                      ++.|+.+.+..+ .+...........++.|+.|++++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG  223 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence            455555555555 222211111233445555555554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.16  E-value=0.0085  Score=35.30  Aligned_cols=18  Identities=50%  Similarity=0.774  Sum_probs=7.9

Q ss_pred             CCEEeCcCCcccccccccc
Q 002574          833 LHILNLSHNQLSGAIPQSL  851 (906)
Q Consensus       833 L~~L~Ls~N~l~~~ip~~l  851 (906)
                      |++|||++|+++ .+|..|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            344444444444 344433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.88  E-value=0.011  Score=34.78  Aligned_cols=22  Identities=50%  Similarity=0.735  Sum_probs=17.8

Q ss_pred             cccEEEcCCCcccccCChhhhcc
Q 002574          808 DVNSIDLSWNNLTGQIPDEIGNL  830 (906)
Q Consensus       808 ~L~~LdLs~N~l~~~ip~~l~~l  830 (906)
                      +|+.|||++|+++ .+|.+|++|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            3689999999999 788877654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.28  E-value=0.00078  Score=75.55  Aligned_cols=39  Identities=28%  Similarity=0.277  Sum_probs=21.8

Q ss_pred             CCCceeeccCccccCCC----CccCCCCCCCCEEeCcCccCCc
Q 002574          388 KNLQYLRLSGNSFWGSI----PSSIGNLSSLRKLDLSYNGMNG  426 (906)
Q Consensus       388 ~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~L~~n~~~~  426 (906)
                      ..+++++++.|.++...    ...+..+++++++.++.|.+..
T Consensus       262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            44555555555555332    2334455667777777776653

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.91  E-value=0.0011  Score=74.40  Aligned_cols=238  Identities=23%  Similarity=0.244  Sum_probs=116.7

Q ss_pred             CCCcEEEccCCcCccc----CCCCccCCCCccEEeCCCCcccc----cCCcCC----CCCCCCCEEECcCCcccccc---
Q 002574          631 EDLQILSIRSNKLSGE----FPNCWYHSQMFWGIDISNNSLTG----SIPSSF----GSLRSLSVLLLSNNNLSGGI---  695 (906)
Q Consensus       631 ~~L~~L~Ls~n~l~~~----~p~~l~~~~~L~~L~Ls~n~l~~----~~~~~~----~~l~~L~~L~Ls~n~l~~~~---  695 (906)
                      ..+++|++..|.+++.    +...+.....++.++++.|.+..    .++..+    ....++++|.+.+|.++...   
T Consensus       144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~  223 (478)
T KOG4308|consen  144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCAL  223 (478)
T ss_pred             HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHH
Confidence            3445555555555432    23344445666666666665521    112222    23566777777777765211   


Q ss_pred             -ccccccCCC-CCEEEccCCcCcccccHHHHhc---C-CCCcEEEccCCccccc----cCccccCCCCCCEEeCCCCcCC
Q 002574          696 -PCSLQNCTG-LTSIDLGGNQLSGSLPLWISEN---L-SSFFMLRLRSNLLSGD----IPQRLCNLQNLHIIDLSHNNFS  765 (906)
Q Consensus       696 -p~~l~~l~~-L~~L~L~~N~l~~~~p~~~~~~---l-~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~  765 (906)
                       ...+...+. +..+++.+|.+-+..-..+...   + ..+++++++.|.++..    +...+..+++++++.+++|.+.
T Consensus       224 l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  224 LDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence             122344444 6667777777653322222111   2 3557778888877654    2345566778888888888775


Q ss_pred             CCCCcc----c---ccccccccC-CC--cc----c---------hh--eeeeee--ecCC----CcccccccCcccEEEc
Q 002574          766 GAIPRC----I---GNLSALVYG-NN--SE----V---------FQ--QLIWRV--VKGR----NPEYSNIIADVNSIDL  814 (906)
Q Consensus       766 ~~ip~~----~---~~l~~L~~~-~~--~~----~---------~~--~~~~~~--~~~~----~~~~~~~~~~L~~LdL  814 (906)
                      ..--..    .   ..+..+... +.  ..    .         ..  ...+..  .+..    ..........+..+++
T Consensus       304 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  383 (478)
T KOG4308|consen  304 DYGVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSL  383 (478)
T ss_pred             cHHHHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhh
Confidence            321100    0   000111000 00  00    0         00  000000  0000    0000111223455666


Q ss_pred             CCCcccc----cCChhhhccCCCCEEeCcCCccccccccccc----CCCCCCeEeCcCCccc
Q 002574          815 SWNNLTG----QIPDEIGNLSALHILNLSHNQLSGAIPQSLS----SLASLSKLNLSFNNLA  868 (906)
Q Consensus       815 s~N~l~~----~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~----~l~~L~~L~ls~N~l~  868 (906)
                      ..+.+.+    .++..+.....++.+++++|.....-+..+.    ....+..+.++.|+++
T Consensus       384 ~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~  445 (478)
T KOG4308|consen  384 NSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNGSLKALRLSRNPIT  445 (478)
T ss_pred             hccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcccchhhhhccChhh
Confidence            6665554    3444567778888999999877654433322    2227888888888876

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.22  E-value=0.015  Score=56.31  Aligned_cols=89  Identities=18%  Similarity=0.232  Sum_probs=71.9

Q ss_pred             ccccCCCCCCEEeCCCCcCCCCCCcccccccccccCCCccchheeeeeeecCCCcccccccCcccEEEcCCCcccccCCh
Q 002574          746 QRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPD  825 (906)
Q Consensus       746 ~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~  825 (906)
                      .++......+.||++.|++. ..-..|+.++.+                               ..||++.|++. ..|+
T Consensus        36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~-------------------------------~rl~~sknq~~-~~~~   82 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRL-------------------------------VRLDLSKNQIK-FLPK   82 (326)
T ss_pred             hhhhccceeeeehhhhhHHH-hhccchHHHHHH-------------------------------HHHhccHhhHh-hChh
Confidence            35667778888999988875 333344444444                               67999999998 7899


Q ss_pred             hhhccCCCCEEeCcCCcccccccccccCCCCCCeEeCcCCccc
Q 002574          826 EIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLA  868 (906)
Q Consensus       826 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  868 (906)
                      .++++..+..+++.+|..+ ..|.+++..+.++++++.+|++.
T Consensus        83 d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   83 DAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             hHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence            9999999999999999888 67899999999999999999875

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.79  E-value=0.017  Score=56.04  Aligned_cols=82  Identities=21%  Similarity=0.155  Sum_probs=65.1

Q ss_pred             CcEEEEecCCcccccCCCcCCCcCCCCccccccccccccCCCCCCEEeCCCCCCCCCCCChhhhcCCCCCeeeccCCcCc
Q 002574           88 GHVTQLNLRNPYQLINGGVGDSTAYKGSCLGGKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFS  167 (906)
Q Consensus        88 ~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~  167 (906)
                      .||+.||++.+.                 + -.+-..+..++.|..||++.|.+.  -+|..++.+..++++++..|+.+
T Consensus        42 kr~tvld~~s~r-----------------~-vn~~~n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~  101 (326)
T KOG0473|consen   42 KRVTVLDLSSNR-----------------L-VNLGKNFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHS  101 (326)
T ss_pred             ceeeeehhhhhH-----------------H-HhhccchHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchh
Confidence            578899988751                 1 123345677888889999988887  47888999999999999888887


Q ss_pred             cCCCcCcCCCCCCcEEEccCCCC
Q 002574          168 GEIPPQLGSLSSLQYLDLYADSF  190 (906)
Q Consensus       168 ~~~p~~l~~l~~L~~L~ls~n~~  190 (906)
                       ..|.+++.+++++++++-++.+
T Consensus       102 -~~p~s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen  102 -QQPKSQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             -hCCccccccCCcchhhhccCcc
Confidence             7888999999999988887764

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=88.96  E-value=0.27  Score=26.76  Aligned_cols=11  Identities=45%  Similarity=0.815  Sum_probs=3.5

Q ss_pred             CCEEEccCCcC
Q 002574          705 LTSIDLGGNQL  715 (906)
Q Consensus       705 L~~L~L~~N~l  715 (906)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            44444444443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.65  E-value=0.14  Score=49.11  Aligned_cols=83  Identities=22%  Similarity=0.114  Sum_probs=57.4

Q ss_pred             cccEEECCCCcCCCCChhhhhcCCCCCEEEeecccccccC-chhhc-CCCCCCeEeCCCCCCCCCCcchhhhcCCCCCEE
Q 002574          264 SISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHI-PNEFA-NLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSL  341 (906)
Q Consensus       264 ~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~-~~~l~-~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L  341 (906)
                      .++.+|-++..+..+--..+..++.++.|.+.+|.-.+.- -+-++ -.++|+.|++++|+.++......+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            4677777777776655566677777888887777533211 01111 357889999999988888777788888888888


Q ss_pred             EccCC
Q 002574          342 DLSAN  346 (906)
Q Consensus       342 ~Ls~n  346 (906)
                      .+.+-
T Consensus       182 ~l~~l  186 (221)
T KOG3864|consen  182 HLYDL  186 (221)
T ss_pred             HhcCc
Confidence            77653

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.42  E-value=0.79  Score=28.10  Aligned_cols=21  Identities=48%  Similarity=0.531  Sum_probs=11.6

Q ss_pred             CCCCEEEccCCcCcccccHHHH
Q 002574          703 TGLTSIDLGGNQLSGSLPLWIS  724 (906)
Q Consensus       703 ~~L~~L~L~~N~l~~~~p~~~~  724 (906)
                      ++|+.|++++|++. .+|...+
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45566666666655 5555443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.42  E-value=0.79  Score=28.10  Aligned_cols=21  Identities=48%  Similarity=0.531  Sum_probs=11.6

Q ss_pred             CCCCEEEccCCcCcccccHHHH
Q 002574          703 TGLTSIDLGGNQLSGSLPLWIS  724 (906)
Q Consensus       703 ~~L~~L~L~~N~l~~~~p~~~~  724 (906)
                      ++|+.|++++|++. .+|...+
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45566666666655 5555443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.52  E-value=0.21  Score=47.95  Aligned_cols=34  Identities=35%  Similarity=0.326  Sum_probs=20.3

Q ss_pred             CCccEEECcCC-CCCCccchhccCCCCCceeeccC
Q 002574          364 NNLEYLDLSSN-SLEGELPKSLGNLKNLQYLRLSG  397 (906)
Q Consensus       364 ~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~  397 (906)
                      ++|+.|++++| +|+..--..+..+++|+.|.+.+
T Consensus       151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             cchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence            47777777766 35544444555666666666553

>smart00370 LRR Leucine-rich repeats, outliers

Probab=83.31  E-value=0.89  Score=27.87  Aligned_cols=14  Identities=57%  Similarity=0.674  Sum_probs=7.7

Q ss_pred             CCCCEEeCcCCccc
Q 002574          831 SALHILNLSHNQLS  844 (906)
Q Consensus       831 ~~L~~L~Ls~N~l~  844 (906)
                      ++|+.|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555555

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=83.31  E-value=0.89  Score=27.87  Aligned_cols=14  Identities=57%  Similarity=0.674  Sum_probs=7.7

Q ss_pred             CCCCEEeCcCCccc
Q 002574          831 SALHILNLSHNQLS  844 (906)
Q Consensus       831 ~~L~~L~Ls~N~l~  844 (906)
                      ++|+.|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	906
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-45
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-13
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-45
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		9e-14
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-16
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		1e-10
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		2e-10
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		1e-09
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		5e-08
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		5e-07
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		5e-06
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		1e-05
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		3e-05
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		9e-05
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		1e-04
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		1e-04
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		1e-04
2z7x_A	549	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		2e-04
2z80_A	353	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		3e-04
2v70_A	220	Third Lrr Domain Of Human Slit2 Length = 220		4e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		7e-04
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		7e-04
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		7e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  179 bits (455), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 211/715 (29%), Positives = 310/715 (43%), Gaps = 142/715 (19%)
Query: 263 TSISVLDLSENSFNSAIPPWLFSLTSLTKL-YLRWNFFTGHIPNEFAN-LKL--LEVLDL 318
            S++ LDLS NS +  +   L SL S + L +L  +  T   P + +  LKL  LEVLDL
Sbjct: 97  ASLTSLDLSRNSLSGPVT-TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 155
Query: 319 SNNLDLGGQLPK--LFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSL 376
           S N   G  +    L      LK L +S N ++G+V         R  NLE+LD+SSN+ 
Sbjct: 156 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD------VSRCVNLEFLDVSSNNF 209
Query: 377 EGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLS 436
              +P  LG+   LQ+L +SGN   G    +I   + L+ L++S N   G IP     L 
Sbjct: 210 STGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLK 266
Query: 437 ELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIE 496
            L   +L +N + G + +        L    L+         N  Y  VPPF        
Sbjct: 267 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG--------NHFYGAVPPF-------- 310
Query: 497 NCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPR 556
                          + L S+ L +   S  +P D   K+   +  L LS N+  G+LP 
Sbjct: 311 -----------FGSCSLLESLALSSNNFSGELPMDTLLKMRG-LKVLDLSFNEFSGELPE 358
Query: 557 QMN--SPNLRSIDLSSNHFEG-TLPLWSTNAD----ELFLQDNRFSGPLPENIGSLMPRL 609
            +   S +L ++DLSSN+F G  LP    N      EL+LQ+N F+G +P  + S    L
Sbjct: 359 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSEL 417
Query: 610 QRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTG 669
             L+LS+N LSG IPSS+ +L  L+ L +  N L GE P    + +    + +  N LTG
Sbjct: 418 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 477
Query: 670 SIPXXXXXXXXXXXXXXXXXXXXXXIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSS 729
            IP                          L NCT L  I L  N+L+G +P WI   L +
Sbjct: 478 EIPS------------------------GLSNCTNLNWISLSNNRLTGEIPKWIGR-LEN 512
Query: 730 FFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIP-------------------- 769
             +L+L +N  SG+IP  L + ++L  +DL+ N F+G IP                    
Sbjct: 513 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 572
Query: 770 ----------RCIG------------------------NLSALVYG---------NNSEV 786
                      C G                        N+++ VYG         N S +
Sbjct: 573 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 632
Query: 787 FQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGA 846
           F  + + ++ G  P+    +  +  ++L  N+++G IPDE+G+L  L+IL+LS N+L G 
Sbjct: 633 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 692
Query: 847 IPQXXXXXXXXXXXXXXXXXXAGKIPSLPNFND--PSIYEGNPLLCGAPLPTKCP 899
           IPQ                  +G IP +  F    P+ +  NP LCG PLP   P
Sbjct: 693 IPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDP 747

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 153/409 (37%), Gaps = 86/409 (21%)
Query: 544 ILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWST--------------------- 582
            LSN+ I G +     S +L S+DLS N   G +   ++                     
Sbjct: 80  FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 583 ---------NADELFLQDNRFSGP------LPENIGSLMPRLQRLYLSWNQLSGRIPSSV 627
                    + + L L  N  SG       L +  G     L+ L +S N++SG +  S 
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG----ELKHLAISGNKISGDVDVSR 195
Query: 628 C-NLE--------------------DLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNS 666
           C NLE                     LQ L I  NKLSG+F            ++IS+N 
Sbjct: 196 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 255
Query: 667 LTGSIPXXXXXXXXXXXXXXXXXXXXXXIPCSLQN-CTGLTSIDLGGNQLSGSLPLWISE 725
             G IP                      IP  L   C  LT +DL GN   G++P +   
Sbjct: 256 FVGPIP--PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 313
Query: 726 NLSSFFMLRLRSNLLSGDIP-QRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYG--- 781
                 +    +N  SG++P   L  ++ L ++DLS N FSG +P  + NLSA +     
Sbjct: 314 CSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 372
Query: 782 ---------------NNSEVFQQLIWR--VVKGRNPEYSNIIADVNSIDLSWNNLTGQIP 824
                          N     Q+L  +     G+ P   +  +++ S+ LS+N L+G IP
Sbjct: 373 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 432
Query: 825 DEIGNLSALHILNLSHNQLSGAIPQXXXXXXXXXXXXXXXXXXAGKIPS 873
             +G+LS L  L L  N L G IPQ                   G+IPS
Sbjct: 433 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 481

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  179 bits (455), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 211/715 (29%), Positives = 310/715 (43%), Gaps = 142/715 (19%)
Query: 263 TSISVLDLSENSFNSAIPPWLFSLTSLTKL-YLRWNFFTGHIPNEFAN-LKL--LEVLDL 318
            S++ LDLS NS +  +   L SL S + L +L  +  T   P + +  LKL  LEVLDL
Sbjct: 100 ASLTSLDLSRNSLSGPVT-TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158
Query: 319 SNNLDLGGQLPK--LFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSL 376
           S N   G  +    L      LK L +S N ++G+V         R  NLE+LD+SSN+ 
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD------VSRCVNLEFLDVSSNNF 212
Query: 377 EGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLS 436
              +P  LG+   LQ+L +SGN   G    +I   + L+ L++S N   G IP     L 
Sbjct: 213 STGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLK 269
Query: 437 ELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIE 496
            L   +L +N + G + +        L    L+         N  Y  VPPF        
Sbjct: 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG--------NHFYGAVPPF-------- 313
Query: 497 NCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPR 556
                          + L S+ L +   S  +P D   K+   +  L LS N+  G+LP 
Sbjct: 314 -----------FGSCSLLESLALSSNNFSGELPMDTLLKMRG-LKVLDLSFNEFSGELPE 361
Query: 557 QMN--SPNLRSIDLSSNHFEG-TLPLWSTNAD----ELFLQDNRFSGPLPENIGSLMPRL 609
            +   S +L ++DLSSN+F G  LP    N      EL+LQ+N F+G +P  + S    L
Sbjct: 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSEL 420
Query: 610 QRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTG 669
             L+LS+N LSG IPSS+ +L  L+ L +  N L GE P    + +    + +  N LTG
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480
Query: 670 SIPXXXXXXXXXXXXXXXXXXXXXXIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSS 729
            IP                          L NCT L  I L  N+L+G +P WI   L +
Sbjct: 481 EIPS------------------------GLSNCTNLNWISLSNNRLTGEIPKWIGR-LEN 515
Query: 730 FFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIP-------------------- 769
             +L+L +N  SG+IP  L + ++L  +DL+ N F+G IP                    
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575
Query: 770 ----------RCIG------------------------NLSALVYG---------NNSEV 786
                      C G                        N+++ VYG         N S +
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635
Query: 787 FQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGA 846
           F  + + ++ G  P+    +  +  ++L  N+++G IPDE+G+L  L+IL+LS N+L G 
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695
Query: 847 IPQXXXXXXXXXXXXXXXXXXAGKIPSLPNFND--PSIYEGNPLLCGAPLPTKCP 899
           IPQ                  +G IP +  F    P+ +  NP LCG PLP   P
Sbjct: 696 IPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDP 750

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 75.9 bits (185), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 153/409 (37%), Gaps = 86/409 (21%)
Query: 544 ILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWST--------------------- 582
            LSN+ I G +     S +L S+DLS N   G +   ++                     
Sbjct: 83  FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 583 ---------NADELFLQDNRFSGP------LPENIGSLMPRLQRLYLSWNQLSGRIPSSV 627
                    + + L L  N  SG       L +  G     L+ L +S N++SG +  S 
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG----ELKHLAISGNKISGDVDVSR 198
Query: 628 C-NLE--------------------DLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNS 666
           C NLE                     LQ L I  NKLSG+F            ++IS+N 
Sbjct: 199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258
Query: 667 LTGSIPXXXXXXXXXXXXXXXXXXXXXXIPCSLQN-CTGLTSIDLGGNQLSGSLPLWISE 725
             G IP                      IP  L   C  LT +DL GN   G++P +   
Sbjct: 259 FVGPIP--PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316
Query: 726 NLSSFFMLRLRSNLLSGDIP-QRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYG--- 781
                 +    +N  SG++P   L  ++ L ++DLS N FSG +P  + NLSA +     
Sbjct: 317 CSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375
Query: 782 ---------------NNSEVFQQLIWR--VVKGRNPEYSNIIADVNSIDLSWNNLTGQIP 824
                          N     Q+L  +     G+ P   +  +++ S+ LS+N L+G IP
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435
Query: 825 DEIGNLSALHILNLSHNQLSGAIPQXXXXXXXXXXXXXXXXXXAGKIPS 873
             +G+LS L  L L  N L G IPQ                   G+IPS
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 122/304 (40%), Gaps = 63/304 (20%)
Query: 597 PLPENIGSLMPRLQRLYLS-WNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQ 655
           P+P ++ +L P L  LY+   N L G IP ++  L  L  L I    +SG  P+     +
Sbjct: 67  PIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125
Query: 656 MFWGIDISNNSLTGSIPXXXXXXXXXXXXXXXXXXXXXXIPCSLQNCTGLTSIDLGGNQL 715
               +D S N+L+G++P                         SL N  G+T     GN++
Sbjct: 126 TLVTLDFSYNALSGTLPPSIS---------------------SLPNLVGIT---FDGNRI 161
Query: 716 SGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIG-- 773
           SG++P         F  + +  N L+G IP    NL NL  +DLS N   G      G  
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSD 220
Query: 774 -NLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSA 832
            N   +    NS  F   + +V   +N         +N +DL  N + G +P  +  L  
Sbjct: 221 KNTQKIHLAKNSLAFD--LGKVGLSKN---------LNGLDLRNNRIYGTLPQGLTQLKF 269
Query: 833 LHILNLSHNQLSGAIPQXXXXXXXXXXXXXXXXXXAGKIPSLPNFNDPSIYEGNPLLCGA 892
           LH LN+S N L G IPQ                   G +       D S Y  N  LCG+
Sbjct: 270 LHSLNVSFNNLCGEIPQ------------------GGNLQRF----DVSAYANNKCLCGS 307
Query: 893 PLPT 896
           PLP 
Sbjct: 308 PLPA 311

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 91/223 (40%), Gaps = 9/223 (4%)
Query: 250 LQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFAN 309
           LQ +P+ +P     +   + L  N  +        +  +LT L+L  N         F  
Sbjct: 23  LQAVPVGIP----AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG 78
Query: 310 LKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYL 369
           L LLE LDLS+N  L    P  F  L RL +L L    L       F G +     L+YL
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA----LQYL 134
Query: 370 DLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIP 429
            L  N+L+     +  +L NL +L L GN        +   L SL +L L  N +    P
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194
Query: 430 ESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEP 472
            +F  L  L+   L  N+   +  E+    L+ L+  RL   P
Sbjct: 195 HAFRDLGRLMTLYLFANNLSALPTEA-LAPLRALQYLRLNDNP 236

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 91/223 (40%), Gaps = 9/223 (4%)
Query: 250 LQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFAN 309
           LQ +P+ +P     +   + L  N  +        +  +LT L+L  N         F  
Sbjct: 22  LQAVPVGIP----AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG 77
Query: 310 LKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYL 369
           L LLE LDLS+N  L    P  F  L RL +L L    L       F G +     L+YL
Sbjct: 78  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA----LQYL 133
Query: 370 DLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIP 429
            L  N+L+     +  +L NL +L L GN        +   L SL +L L  N +    P
Sbjct: 134 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 193
Query: 430 ESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEP 472
            +F  L  L+   L  N+   +  E+    L+ L+  RL   P
Sbjct: 194 HAFRDLGRLMTLYLFANNLSALPTEA-LAPLRALQYLRLNDNP 235

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 93/224 (41%), Gaps = 11/224 (4%)
Query: 250 LQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLF-SLTSLTKLYLRWNFFTGHIPNEFA 308
           LQ +P  +P     S   + L  N   S +P   F S  +LT L+L  N   G     F 
Sbjct: 22  LQAVPTGIP----ASSQRIFLHGNRI-SYVPAASFQSCRNLTILWLHSNALAGIDAAAFT 76
Query: 309 NLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEY 368
            L LLE LDLS+N  L    P  F  L  L +L L    L       F G +     L+Y
Sbjct: 77  GLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAA----LQY 132
Query: 369 LDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTI 428
           L L  N+L+     +  +L NL +L L GN        +   L SL +L L  N +    
Sbjct: 133 LYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVH 192
Query: 429 PESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEP 472
           P +F  L  L+   L  N+   +L     + L+ L+  RL   P
Sbjct: 193 PHAFRDLGRLMTLYLFANNLS-MLPAEVLVPLRSLQYLRLNDNP 235

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 115/479 (24%), Positives = 183/479 (38%), Gaps = 80/479 (16%)
Query: 251 QGIPLSL---PFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNE- 306
           Q  PL++    F N  ++ +LDL  +      P     L  L +L L +   +  +  + 
Sbjct: 58  QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDG 117
Query: 307 -FANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNN 365
            F NLK L  LDLS N      L   FG L  LKS+D S+N +        +   G+   
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK--T 175
Query: 366 LEYLDLSSNSLEGELPKSLGNLKN------LQYLRLSGNSFWGSIPSSIGNL-------- 411
           L +  L++NSL   +    G   N      L+ L +SGN +   I  +  N         
Sbjct: 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS 235
Query: 412 ------------------------------SSLRKLDLSYNGMNGTIPESFGKLSELVDA 441
                                         SS+R LDLS+  +       F  L +L   
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVL 295
Query: 442 NLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQV- 500
           NL  N    I  E+ F  L  L+   L+     + +++ ++  +P      +Q  +  + 
Sbjct: 296 NLAYNKINKIADEA-FYGLDNLQVLNLSYNLLGE-LYSSNFYGLPKVAYIDLQKNHIAII 353
Query: 501 -GPSFPVWLQVQT-ELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQM 558
              +F    ++QT +L    L  +    +IP             + LS N++   LP+  
Sbjct: 354 QDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD------------IFLSGNKLV-TLPKIN 400
Query: 559 NSPNLRSIDLSSNHFEGTLPLW----STNADELFLQDNRFSGPLPENIGSLMPRLQRLYL 614
            + NL  I LS N  E    L+      +   L L  NRFS    +   S  P L++L+L
Sbjct: 401 LTANL--IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458
Query: 615 SWNQLSGRIPSSVC-----NLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLT 668
             N L     + +C      L  LQ+L +  N L+   P  + H     G+ +++N LT
Sbjct: 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 88/194 (45%), Gaps = 10/194 (5%)
Query: 260 INFTSISVLDLSEN--SFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLD 317
           ++  S+  LDLS N  SF        F  TSL  L L +N       N F  L+ LE LD
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLD 402
Query: 318 LSN-NLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSL 376
             + NL    +   +F  LR L  LD+S  +     +  F+G S     LE L ++ NS 
Sbjct: 403 FQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS----LEVLKMAGNSF 457
Query: 377 -EGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKL 435
            E  LP     L+NL +L LS        P++  +LSSL+ L+++ N +       F +L
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517
Query: 436 SELVDANLLQNSWE 449
           + L    L  N W+
Sbjct: 518 TSLQKIWLHTNPWD 531

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 99/245 (40%), Gaps = 28/245 (11%)
Query: 239 SLVELRLHYCQLQGIPLSLPFINFTSISVLDLSEN--SFNSAIPPWLFSLTSLTKLYLRW 296
           S   L L   +LQ +P  + F   T ++ L LS N  SF        F  TSL  L L +
Sbjct: 29  SATRLELESNKLQSLPHGV-FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87
Query: 297 NFFTGHIPNEFANLKLLEVLDLSN-NLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEF 355
           N       N F  L+ LE LD  + NL    +   +F  LR L  LD+S  +     +  
Sbjct: 88  NGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGI 145
Query: 356 FDGFSG---------------------RPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLR 394
           F+G S                         NL +LDLS   LE   P +  +L +LQ L 
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 395 LSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKL-SELVDANLLQNSWEGILQ 453
           +S N+F+         L+SL+ LD S N +  +  +      S L   NL QN +    +
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265
Query: 454 ESQFM 458
              F+
Sbjct: 266 HQSFL 270

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 89/223 (39%), Gaps = 15/223 (6%)
Query: 249 QLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFA 308
           +L  IP ++P         LDL  N  +S        LT L  LYL  N         F 
Sbjct: 27  KLTAIPSNIP----ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK 82
Query: 309 NLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEY 368
            LK LE L +++N  L      +F  L  L  L L  N L       FD  +     L Y
Sbjct: 83  ELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT----KLTY 137
Query: 369 LDLSSNSLEGELPKSL-GNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGT 427
           L L  N L+  LPK +   L +L+ LRL  N        +   L+ L+ L L  N +   
Sbjct: 138 LSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196
Query: 428 IPESFGKLSELVDANLLQNSWE----GILQESQFMNLKRLESF 466
              +F  L +L    L +N W+    GI+  ++++  K  E  
Sbjct: 197 PEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGL 239

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 91/224 (40%), Gaps = 27/224 (12%)
Query: 260 INFTSISVLDLSEN--SFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLD 317
           ++  S+  LDLS N  SF        F  TSL  L L +N       N F  L+ LE LD
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLD 402
Query: 318 LSN-NLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSG--------------- 361
             + NL    +   +F  LR L  LD+S  +     +  F+G S                
Sbjct: 403 FQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461
Query: 362 ------RPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLR 415
                    NL +LDLS   LE   P +  +L +LQ L +S N+F+         L+SL+
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521
Query: 416 KLDLSYNGMNGTIPESFGKL-SELVDANLLQNSWEGILQESQFM 458
            LD S N +  +  +      S L   NL QN +    +   F+
Sbjct: 522 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFL 565

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 99/232 (42%), Gaps = 12/232 (5%)
Query: 243 LRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGH 302
           L LH  Q+Q I ++  F +   + +L LS N   +        L +L  L L  N  T  
Sbjct: 69  LNLHENQIQIIKVN-SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT- 126
Query: 303 IPN-EFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHE-FFDGFS 360
           IPN  F  L  L+ L L NN  +       F  +  L+ LDL        + E  F+G S
Sbjct: 127 IPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185
Query: 361 GRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLS 420
               NL YL+L+  +L  E+P +L  L  L  L LSGN      P S   L  L+KL + 
Sbjct: 186 ----NLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239
Query: 421 YNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEP 472
            + +      +F  L  LV+ NL  N+   +L    F  L  LE   L   P
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNP 290

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 96/231 (41%), Gaps = 48/231 (20%)
Query: 258 PFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLD 317
           PF N TSI+ LDLS N F  ++    F   + TK+                     + L 
Sbjct: 208 PFKN-TSITTLDLSGNGFKESMAKRFFDAIAGTKI---------------------QSLI 245
Query: 318 LSNNLDLGGQL-------PKLFGI----LRRLKSLDLSANNLNGEVHEFFDGFSGRPNNL 366
           LSN+ ++G          P  F         +K+ DLS + +   +   F  F+    +L
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT----DL 301
Query: 367 EYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSI-GNLSSLRKLDLSYNGMN 425
           E L L+ N +      +   L +L  L LS N F GSI S +  NL  L  LDLSYN + 
Sbjct: 302 EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIR 360
Query: 426 GTIPESFGKLSEL----VDANLLQNSWEGILQESQFMNLKRLESFRLTTEP 472
               +SF  L  L    +D N L++  +GI     F  L  L+   L T P
Sbjct: 361 ALGDQSFLGLPNLKELALDTNQLKSVPDGI-----FDRLTSLQKIWLHTNP 406

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 90/224 (40%), Gaps = 27/224 (12%)
Query: 260 INFTSISVLDLSEN--SFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLD 317
           ++  S+  LDLS N  SF        F   SL  L L +N       N F  L+ LE LD
Sbjct: 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN-FLGLEQLEHLD 426
Query: 318 LSN-NLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSG--------------- 361
             + NL    +   +F  LR L  LD+S  +     +  F+G S                
Sbjct: 427 FQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 485
Query: 362 ------RPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLR 415
                    NL +LDLS   LE   P +  +L +LQ L +S N+F+         L+SL+
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545
Query: 416 KLDLSYNGMNGTIPESFGKL-SELVDANLLQNSWEGILQESQFM 458
            LD S N +  +  +      S L   NL QN +    +   F+
Sbjct: 546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFL 589

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 65/135 (48%), Gaps = 11/135 (8%)
Query: 322 LDLGGQLPKLFGILRRLKSLD---LSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEG 378
           L LGG        L+ L +L    L+ N L    +  FD  +    NL+ L L  N L+ 
Sbjct: 68  LALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLT----NLKELVLVENQLQS 123
Query: 379 ELPKSLGNLKNLQYLRLSGNSFWGSIPSSI-GNLSSLRKLDLSYNGMNGTIPES-FGKLS 436
                   L NL YL L+ N    S+P  +   L++L +LDLSYN +  ++PE  F KL+
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLT 181
Query: 437 ELVDANLLQNSWEGI 451
           +L D  L QN  + +
Sbjct: 182 QLKDLRLYQNQLKSV 196

>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 549

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 53/109 (48%)
Query: 360 SGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDL 419
           SG    ++ LDLS+N +       L    NLQ L L+ N        S  +L SL  LDL
Sbjct: 22  SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 81
Query: 420 SYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRL 468
           SYN ++      F  LS L   NLL N ++ + + S F +L +L+  R+
Sbjct: 82  SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 130

>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 353

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 53/109 (48%)
Query: 360 SGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDL 419
           SG    ++ LDLS+N +       L    NLQ L L+ N        S  +L SL  LDL
Sbjct: 48  SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107
Query: 420 SYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRL 468
           SYN ++      F  LS L   NLL N ++ + + S F +L +L+  R+
Sbjct: 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156

>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 66/154 (42%), Gaps = 10/154 (6%)
Query: 295 RWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHE 354
           + N    HIP   A L+L      +NN     +   +F  L +L+ ++ S N +      
Sbjct: 22  KLNKIPEHIPQYTAELRL------NNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG 75
Query: 355 FFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSL 414
            F+G SG    +  + L+SN LE    K    L++L+ L L  N        S   LSS+
Sbjct: 76  AFEGASG----VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV 131
Query: 415 RKLDLSYNGMNGTIPESFGKLSELVDANLLQNSW 448
           R L L  N +    P +F  L  L   NLL N +
Sbjct: 132 RLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 142/351 (40%), Gaps = 65/351 (18%)
Query: 514 LTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHF 573
           LT +   N  ++D  P    +KL      ++++NNQI    P   N  NL  + L +N  
Sbjct: 65  LTQINFSNNQLTDITPLKNLTKLVD----ILMNNNQIADITPL-ANLTNLTGLTLFNNQI 119
Query: 574 EGTLPLWS-TNADELFLQDNRFSGPLPENIGSL--MPRLQRLYLSWNQLSGRIPSSVCNL 630
               PL + TN + L L  N  S     +I +L  +  LQ+L  S NQ++   P  + NL
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTIS-----DISALSGLTSLQQLNFSSNQVTDLKP--LANL 172
Query: 631 EDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPXXXXXXXXXXXXXXXXXX 690
             L+ L I SNK+S    +          +  +NN ++   P                  
Sbjct: 173 TTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK 230
Query: 691 XXXXIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCN 750
                  +L + T LT +DL  NQ+S   PL     L+    L+L +N +S   P  L  
Sbjct: 231 DI----GTLASLTNLTDLDLANNQISNLAPL---SGLTKLTELKLGANQISNISP--LAG 281
Query: 751 LQNLHIIDLSHNNFSGAIPRCIGNLSALVY-----GNNSEV--------FQQLIWRVVKG 797
           L  L  ++L+ N      P  I NL  L Y      N S++         Q+L +     
Sbjct: 282 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF----- 334
Query: 798 RNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIP 848
               Y+N ++DV+S               + NL+ ++ L+  HNQ+S   P
Sbjct: 335 ----YNNKVSDVSS---------------LANLTNINWLSAGHNQISDLTP 366

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 142/351 (40%), Gaps = 65/351 (18%)
Query: 514 LTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHF 573
           LT +   N  ++D  P    +KL      ++++NNQI    P   N  NL  + L +N  
Sbjct: 65  LTQINFSNNQLTDITPLKNLTKLVD----ILMNNNQIADITPL-ANLTNLTGLTLFNNQI 119
Query: 574 EGTLPLWS-TNADELFLQDNRFSGPLPENIGSL--MPRLQRLYLSWNQLSGRIPSSVCNL 630
               PL + TN + L L  N  S     +I +L  +  LQ+L  S NQ++   P  + NL
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTIS-----DISALSGLTSLQQLSFSSNQVTDLKP--LANL 172
Query: 631 EDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPXXXXXXXXXXXXXXXXXX 690
             L+ L I SNK+S    +          +  +NN ++   P                  
Sbjct: 173 TTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK 230
Query: 691 XXXXIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCN 750
                  +L + T LT +DL  NQ+S   PL     L+    L+L +N +S   P  L  
Sbjct: 231 DI----GTLASLTNLTDLDLANNQISNLAPL---SGLTKLTELKLGANQISNISP--LAG 281
Query: 751 LQNLHIIDLSHNNFSGAIPRCIGNLSALVY-----GNNSEV--------FQQLIWRVVKG 797
           L  L  ++L+ N      P  I NL  L Y      N S++         Q+L +     
Sbjct: 282 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF----- 334
Query: 798 RNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIP 848
               Y+N ++DV+S               + NL+ ++ L+  HNQ+S   P
Sbjct: 335 ----YNNKVSDVSS---------------LANLTNINWLSAGHNQISDLTP 366

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 84/194 (43%), Gaps = 9/194 (4%)
Query: 305 NEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPN 364
           +EFA+   LE L+L+ N+ +    P  F  L  L++L L +N L       F G S    
Sbjct: 50  DEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS---- 104
Query: 365 NLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGM 424
           NL  LD+S N +   L     +L NL+ L +  N        +   L+SL +L L    +
Sbjct: 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164
Query: 425 NGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNW 484
                E+   L  L+   L   +   I ++  F  L RL+   ++  P   ++  ++ N 
Sbjct: 165 TSIPTEALSHLHGLIVLRLRHLNINAI-RDYSFKRLYRLKVLEISHWP---YLDTMTPNC 220
Query: 485 VPPFRLKSIQIENC 498
           +    L S+ I +C
Sbjct: 221 LYGLNLTSLSITHC 234

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	906
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-93
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-85
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-83
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-55
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-79
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-74
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-72
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-47
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-43
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-32
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-74
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-68
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-66
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-57
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-20
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-73
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-50
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-47
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-38
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-67
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-62
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-55
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-37
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-66
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-61
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-66
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-64
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-51
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-47
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-52
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-51
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-43
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-50
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-48
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-46
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-36
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-33
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-36
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-35
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-34
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-31
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-31
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-31
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-30
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-29
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-29
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-26
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-26
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-21
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-21
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-17
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-14
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-13
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-12
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-09
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	9e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	7e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	5e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	7e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  567 bits (1463), Expect = 0.0
 Identities = 224/874 (25%), Positives = 371/874 (42%), Gaps = 141/874 (16%)

Query: 45  CLDAEREGLLAFKESLTDPSGRLSSW-VGQDCCKWNGVYCNNQSGHVTQLNLRNPYQLIN 103
            L  E   L++FK+ L D    L  W   ++ C ++GV C +    VT ++L +      
Sbjct: 9   SLYREIHQLISFKDVLPDK-NLLPDWSSNKNPCTFDGVTCRD--DKVTSIDLSSKPL--- 62

Query: 104 GGVGDSTAYKGSCLGGKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSF 163
                      +     ++ SLL L  L++L LS +   G  +   F    +L  L+LS 
Sbjct: 63  -----------NVGFSAVSSSLLSLTGLESLFLSNSHING-SVSG-FKCSASLTSLDLSR 109

Query: 164 SSFSGEIPP--QLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFV 221
           +S SG +     LGS S L++L++     SSN+         ++    L+SL++L+L   
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNV-----SSNTLDFPG---KVSGGLKLNSLEVLDLSAN 161

Query: 222 KLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPP 281
            +           +    L  L +   ++ G    +      ++  LD+S N+F++ I P
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISG---DVDVSRCVNLEFLDVSSNNFSTGI-P 217

Query: 282 WLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSL 341
           +L   ++L  L +  N  +G      +    L++L++S+N    G +P     L+ L+ L
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN-QFVGPIPP--LPLKSLQYL 274

Query: 342 DLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFW 401
            L+ N   GE+ +F    SG  + L  LDLS N   G +P   G+   L+ L LS N+F 
Sbjct: 275 SLAENKFTGEIPDF---LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331

Query: 402 GSIP-SSIGNLSSLRKLDLSYNGMNGTIPESFGKLS-ELVDANLLQNSWEG-ILQESQFM 458
           G +P  ++  +  L+ LDLS+N  +G +PES   LS  L+  +L  N++ G IL      
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391

Query: 459 NLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVI 518
               L+   L              N                                   
Sbjct: 392 PKNTLQELYL------------QNN----------------------------------- 404

Query: 519 LRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQM-NSPNLRSIDLSSNHFEGTL 577
               G +  IP    S  S  +  L LS N + G +P  + +   LR + L  N  EG +
Sbjct: 405 ----GFTGKIP-PTLSNCSE-LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458

Query: 578 PLWSTNADEL---FLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQ 634
           P        L    L  N  +G +P  + +    L  + LS N+L+G IP  +  LE+L 
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNC-TNLNWISLSNNRLTGEIPKWIGRLENLA 517

Query: 635 ILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGG 694
           IL + +N  SG  P      +    +D++ N   G+IP++           ++ N ++G 
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGK 573

Query: 695 IPCSLQNCTGLTSIDLGGN--QLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQ 752
               ++N          GN  +  G     ++  LS+     + S +  G       N  
Sbjct: 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN-RLSTRNPCNITSRVYGGHTSPTFDNNG 632

Query: 753 NLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSI 812
           ++  +D+S+N  SG IP+ IG++  L                                 +
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLF-------------------------------IL 661

Query: 813 DLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIP 872
           +L  N+++G IPDE+G+L  L+IL+LS N+L G IPQ++S+L  L++++LS NNL+G IP
Sbjct: 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721

Query: 873 SLPNFN--DPSIYEGNPLLCGAPLPTKCPGKHSP 904
            +  F    P+ +  NP LCG PLP   P     
Sbjct: 722 EMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADG 755

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  308 bits (792), Expect = 1e-93
 Identities = 139/676 (20%), Positives = 236/676 (34%), Gaps = 81/676 (11%)

Query: 239 SLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNF 298
           S       + +L  +P  LP    T+I+VL+L+ N             + LT L + +N 
Sbjct: 5   SHEVADCSHLKLTQVPDDLP----TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 299 FTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDG 358
            +   P     L +L+VL+L +N  L     K F     L  L L +N++    +  F  
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119

Query: 359 FSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPS--SIGNLSSLRK 416
                 NL  LDLS N L      +   L+NLQ L LS N           I   SSL+K
Sbjct: 120 QK----NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175

Query: 417 LDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKF 476
           L+LS N +    P  F  +  L    L        L E   + L                
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT------------- 222

Query: 477 VFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQ--VQTELTSVILRNVGISDTIPGDWFS 534
                        ++++ + N Q+  +          T LT + L    ++  +  D F+
Sbjct: 223 ------------SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFA 269

Query: 535 KLSSEITYLILSNNQIKGKLPRQM-NSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNR 593
            L   + Y  L  N I+      +    N+R ++L  +  +              +    
Sbjct: 270 WLPQ-LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK------------QSISLAS 316

Query: 594 FSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYH 653
                  +   L   L+ L +  N + G   +    L +L+ LS+ ++  S         
Sbjct: 317 LPKIDDFSFQWL-KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT---- 371

Query: 654 SQMFWG--------IDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIP-CSLQNCTG 704
           ++ F          ++++ N ++     +F  L  L VL L  N +   +     +    
Sbjct: 372 NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN 431

Query: 705 LTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSG--DIPQRLCNLQNLHIIDLSHN 762
           +  I L  N+         +  + S   L LR   L      P     L+NL I+DLS+N
Sbjct: 432 IFEIYLSYNKYLQLTRNSFA-LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490

Query: 763 NFSGAIPRCIGNLSALVY----GNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNN 818
           N +      +  L  L       NN     +L      G    +   ++ ++ ++L  N 
Sbjct: 491 NIANINDDMLEGLEKLEILDLQHNN---LARLWKHANPGGPIYFLKGLSHLHILNLESNG 547

Query: 819 LTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSLPNFN 878
                 +   +L  L I++L  N L+       ++  SL  LNL  N +      +    
Sbjct: 548 FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPA 607

Query: 879 DPSIYE----GNPLLC 890
             ++ E     NP  C
Sbjct: 608 FRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  285 bits (731), Expect = 9e-85
 Identities = 137/668 (20%), Positives = 225/668 (33%), Gaps = 76/668 (11%)

Query: 128 LKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYA 187
              +  L+L+ N          F +   L  L++ F++ S   P     L  L+ L+L  
Sbjct: 24  PTNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNL-- 80

Query: 188 DSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHY 247
                N     L   +    +  ++L  L+L    +  +  +         +L+ L L +
Sbjct: 81  ---QHNE----LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK---QKNLITLDLSH 130

Query: 248 CQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWL--FSLTSLTKLYLRWNFFTGHIPN 305
             L    L    +   ++  L LS N   +     L  F+ +SL KL L  N      P 
Sbjct: 131 NGLSSTKLGT-QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 189

Query: 306 EFANLKLLEVLDLSNNLDLGGQLPKLFGI---LRRLKSLDLSANNLNGEVHEFFDGFSGR 362
            F  +  L  L L+N   LG  L +   +      +++L LS + L+   +  F G   +
Sbjct: 190 CFHAIGRLFGLFLNNVQ-LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL--K 246

Query: 363 PNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYN 422
             NL  LDLS N+L      S   L  L+Y  L  N+       S+  L ++R L+L  +
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306

Query: 423 GMNGTI---------PESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPT 473
               +I           SF  L  L   N+  N   GI     F  L  L+   L     
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM-FTGLINLKYLSL----- 360

Query: 474 KKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWF 533
                  S ++     L +    +              + L  + L    IS       F
Sbjct: 361 -------SNSFTSLRTLTNETFVSLA-----------HSPLHILNLTKNKISKIESDA-F 401

Query: 534 SKLSSEITYLILSNNQIKGKLPRQM--NSPNLRSIDLSSNHFEGTLPLW---STNADELF 588
           S L   +  L L  N+I  +L  Q      N+  I LS N +            +   L 
Sbjct: 402 SWLGH-LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460

Query: 589 LQDNRFSG-PLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLS--- 644
           L+           +    +  L  L LS N ++      +  LE L+IL ++ N L+   
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLW 520

Query: 645 -----GEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSL 699
                G              +++ +N         F  L  L ++ L  NNL+       
Sbjct: 521 KHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF 580

Query: 700 QNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIP-----QRLCNLQNL 754
            N   L S++L  N ++            +   L +R N                N  + 
Sbjct: 581 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHT 640

Query: 755 HIIDLSHN 762
           +I +LS +
Sbjct: 641 NIPELSSH 648

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  279 bits (717), Expect = 8e-83
 Identities = 145/740 (19%), Positives = 248/740 (33%), Gaps = 118/740 (15%)

Query: 155 NLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLK 214
           +    + S    + ++P  L   +++  L+L     + N     L        +  S L 
Sbjct: 5   SHEVADCSHLKLT-QVPDDL--PTNITVLNL-----THNQ----LRRLPAANFTRYSQLT 52

Query: 215 LLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENS 274
            L++GF  +  +  +  Q    LP L  L L + +L  +     F   T+++ L L  NS
Sbjct: 53  SLDVGFNTISKLEPELCQK---LPMLKVLNLQHNELSQLSDKT-FAFCTNLTELHLMSNS 108

Query: 275 FNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGI 334
                        +L  L L  N  +         L+ L+ L LSNN  +     +   I
Sbjct: 109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDI 167

Query: 335 L--RRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLG---NLKN 389
                LK L+LS+N +       F         L  L L++  L   L + L       +
Sbjct: 168 FANSSLKKLELSSNQIKEFSPGCFHAIG----RLFGLFLNNVQLGPSLTEKLCLELANTS 223

Query: 390 LQYLRLSGNSFWGSIPSSIGNL--SSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNS 447
           ++ L LS +    +  ++   L  ++L  LDLSYN +N    +SF  L +L    L  N+
Sbjct: 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283

Query: 448 WEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVW 507
            + +   S    L  +    L              +           I    +       
Sbjct: 284 IQHLFSHS-LHGLFNVRYLNL------------KRS------FTKQSISLASLPKIDDFS 324

Query: 508 LQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIK-----GKLPRQMNSPN 562
            Q    L  + + +  I   I  + F+ L + + YL LSN+         +    +    
Sbjct: 325 FQWLKCLEHLNMEDNDIPG-IKSNMFTGLIN-LKYLSLSNSFTSLRTLTNETFVSLAHSP 382

Query: 563 LRSIDLSSNHFEGTLP---LWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQL 619
           L  ++L+ N           W  + + L L  N     L       +  +  +YLS+N+ 
Sbjct: 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442

Query: 620 SGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLR 679
                +S   +  LQ L +R   L                          S PS F  LR
Sbjct: 443 LQLTRNSFALVPSLQRLMLRRVALKN----------------------VDSSPSPFQPLR 480

Query: 680 SLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLS-------GSLPLWISENLSSFFM 732
           +L++L LSNNN++      L+    L  +DL  N L+          P++  + LS   +
Sbjct: 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540

Query: 733 LRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIW 792
           L L SN       +   +L  L IIDL  NN +        N  +L              
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS------------ 588

Query: 793 RVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIG-NLSALHILNLSHNQLSGAIPQSL 851
                              ++L  N +T       G     L  L++  N          
Sbjct: 589 -------------------LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIA 629

Query: 852 SSLASLSKLNLSFNNLAGKI 871
             +  +++ + +   L+   
Sbjct: 630 WFVNWINETHTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  202 bits (517), Expect = 2e-55
 Identities = 105/556 (18%), Positives = 183/556 (32%), Gaps = 62/556 (11%)

Query: 116 CLGGKINPSLLHLKYLDTLDLSLNDFEGAEIPE-YFGQLKNLRYLNLSFSSFSGEIPPQL 174
            L      + + L+ L  L LS N  +  +  E       +L+ L LS +      P   
Sbjct: 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191

Query: 175 GSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAV 234
            ++  L  L L     ++     +L  + L      +S++ L+L   +L          +
Sbjct: 192 HAIGRLFGLFL-----NNVQLGPSLT-EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 245

Query: 235 NMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYL 294
               +L  L L Y  L  +     F     +    L  N+        L  L ++  L L
Sbjct: 246 K-WTNLTMLDLSYNNLNVVGNDS-FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303

Query: 295 RWNFFTGHI---------PNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSA 345
           + +F    I            F  LK LE L++ +N  + G    +F  L  LK L LS 
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSNMFTGLINLKYLSLSN 362

Query: 346 NNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIP 405
           +  +          S   + L  L+L+ N +      +   L +L+ L L  N     + 
Sbjct: 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422

Query: 406 -SSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGI-LQESQFMNLKRL 463
                 L ++ ++ LSYN        SF  +  L    L + + + +    S F  L+ L
Sbjct: 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482

Query: 464 ESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRN-- 521
               L            S N      + +I              L+   +L  + L++  
Sbjct: 483 TILDL------------SNN-----NIANIN----------DDMLEGLEKLEILDLQHNN 515

Query: 522 -----VGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQM--NSPNLRSIDLSSNHFE 574
                   +   P  +   LS  +  L L +N     +P ++  +   L+ IDL  N+  
Sbjct: 516 LARLWKHANPGGPIYFLKGLSH-LHILNLESNGFDE-IPVEVFKDLFELKIIDLGLNNLN 573

Query: 575 GTLPLWSTNAD---ELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLE 631
                   N      L LQ N  +    +  G     L  L + +N       S    + 
Sbjct: 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVN 633

Query: 632 DLQILSIRSNKLSGEF 647
            +        +LS  +
Sbjct: 634 WINETHTNIPELSSHY 649

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  268 bits (688), Expect = 2e-79
 Identities = 129/640 (20%), Positives = 213/640 (33%), Gaps = 77/640 (12%)

Query: 245 LHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIP 304
                   IP +LP     S   LDLS N          FS   L  L L          
Sbjct: 14  CMELNFYKIPDNLP----FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 305 NEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPN 364
             + +L  L  L L+ N  +       F  L  L+ L     NL    +           
Sbjct: 70  GAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK---- 124

Query: 365 NLEYLDLSSNSLEG-ELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLR----KLDL 419
            L+ L+++ N ++  +LP+   NL NL++L LS N       + +  L  +      LDL
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 420 SYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFN 479
           S N MN   P +F ++  L    L  N     + ++    L  LE  RL      +F   
Sbjct: 185 SLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL---GEFRNE 240

Query: 480 VSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSE 539
            +        L+ +                    +    L  +        D F+ L++ 
Sbjct: 241 GNLEKFDKSALEGLC----------------NLTIEEFRLAYLDYYLDDIIDLFNCLTN- 283

Query: 540 ITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLP 599
           ++   L +  I+       N    + ++L +  F     L   +   L    N+      
Sbjct: 284 VSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342

Query: 600 ENIGSLMPRLQRLYLSWNQLS--GRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMF 657
           E     +P L+ L LS N LS  G    S      L+ L +  N +     N     Q+ 
Sbjct: 343 E---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 399

Query: 658 WGIDISNNSLTGSIPSS-FGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLS 716
             +D  +++L      S F SLR+L  L +S+ +            + L  + + GN   
Sbjct: 400 H-LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 717 GSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLS 776
            +    I   L +   L L    L    P    +L +L ++++SHNNF          L+
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 518

Query: 777 ALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNL-SALHI 835
           +L                                 +D S N++      E+ +  S+L  
Sbjct: 519 SLQV-------------------------------LDYSLNHIMTSKKQELQHFPSSLAF 547

Query: 836 LNLSHNQLSGAIPQS--LSSLASLSKLNLSFNNLAGKIPS 873
           LNL+ N  +        L  +    +L +    +    PS
Sbjct: 548 LNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 587

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  254 bits (650), Expect = 4e-74
 Identities = 124/589 (21%), Positives = 206/589 (34%), Gaps = 42/589 (7%)

Query: 211 SSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDL 270
            S K L+L F  L H+G+    +    P L  L L  C++Q I     + + + +S L L
Sbjct: 28  FSTKNLDLSFNPLRHLGSY---SFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLIL 83

Query: 271 SENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPK 330
           + N   S        L+SL KL                +LK L+ L++++NL    +LP+
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 331 LFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNL 390
            F  L  L+ LDLS+N +              P     LDLS N +    P +   +  L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RL 202

Query: 391 QYLRLSGNSFWGSIPS-SIGNLSSLRKLDLSYN---GMNGTIPESFGKLSELVDANLLQN 446
             L L  N    ++    I  L+ L    L                  L  L +  + + 
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 447 SWEGI-----LQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPF----RLKSIQIEN 497
               +          F  L  + SF L          +V+   V  F      + +++ N
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLV---------SVTIERVKDFSYNFGWQHLELVN 313

Query: 498 CQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQI--KGKLP 555
           C+ G    + L+    LT    +               L S + +L LS N +  KG   
Sbjct: 314 CKFGQFPTLKLKSLKRLTFTSNKGGNAFS------EVDLPS-LEFLDLSRNGLSFKGCCS 366

Query: 556 RQM-NSPNLRSIDLSSNHFEGTLP--LWSTNADELFLQDNRFSGPLPENIGSLMPRLQRL 612
           +    + +L+ +DLS N         L     + L  Q +        ++   +  L  L
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426

Query: 613 YLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEF-PNCWYHSQMFWGIDISNNSLTGSI 671
            +S              L  L++L +  N     F P+ +   +    +D+S   L    
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486

Query: 672 PSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFF 731
           P++F SL SL VL +S+NN         +    L  +D   N +  S    +    SS  
Sbjct: 487 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 546

Query: 732 MLRLRSNLLSGDIPQR--LCNLQNLHIIDLSHNNFSGAIPRCIGNLSAL 778
            L L  N  +     +  L  +++   + +       A P     +  L
Sbjct: 547 FLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVL 595

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  249 bits (639), Expect = 1e-72
 Identities = 119/644 (18%), Positives = 192/644 (29%), Gaps = 117/644 (18%)

Query: 267 VLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGG 326
                E +F   IP  L    S   L L +N         F +   L+VLDLS   ++  
Sbjct: 11  TYQCMELNFYK-IPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQT 66

Query: 327 QLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGN 386
                +  L  L +L L+ N +       F G S    +L+ L     +L       +G+
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS----SLQKLVAVETNLASLENFPIGH 122

Query: 387 LKNLQYLRLSGNSFWG-SIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQ 445
           LK L+ L ++ N      +P    NL++L  LDLS N +          L ++       
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM------- 175

Query: 446 NSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFP 505
                                     P      ++S N      +  IQ    +      
Sbjct: 176 --------------------------PLLNLSLDLSLN-----PMNFIQPGAFK------ 198

Query: 506 VWLQVQTELTSVILRNVGISDTIPGDWFSKLSS-EITYLILSNNQIKGKLPRQMNS--PN 562
                +  L  + LRN   S  +       L+  E+  L+L   + +G L +   S    
Sbjct: 199 -----EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253

Query: 563 LRSIDLSSNHFEG---------TLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLY 613
           L ++ +                 L    TN     L              S     Q L 
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLE 310

Query: 614 LSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLT--GSI 671
           L   +        + +L+ L   S +      E             +D+S N L+  G  
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV-----DLPSLEFLDLSRNGLSFKGCC 365

Query: 672 PSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFF 731
             S     SL  L LS N +   +  +      L  +D   + L       +  +L +  
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 732 MLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCI-GNLSALVYGNNSEVFQQL 790
            L +               L +L ++ ++ N+F       I   L  L +          
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF---------- 474

Query: 791 IWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQS 850
                                +DLS   L    P    +LS+L +LN+SHN         
Sbjct: 475 ---------------------LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513

Query: 851 LSSLASLSKLNLSFNNLAGKIPSLPNFNDPSIYE----GNPLLC 890
              L SL  L+ S N++             S+       N   C
Sbjct: 514 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  178 bits (454), Expect = 2e-47
 Identities = 98/549 (17%), Positives = 184/549 (33%), Gaps = 91/549 (16%)

Query: 117 LGGKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGS 176
           L    N  + HLK L  L+++ N  +  ++PEYF  L NL +L+LS +         L  
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 177 LSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNM 236
           L  +  L+L                              L+L    ++ +     +    
Sbjct: 172 LHQMPLLNLS-----------------------------LDLSLNPMNFIQPGAFK---- 198

Query: 237 LPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSA------IPPWLFSLTSLT 290
              L +L L         +         + V  L    F +           L  L +LT
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 291 KLYLRWN---FFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANN 347
               R     ++   I + F  L  +    L +   +       F      + L+L    
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV-TIERVKD--FSYNFGWQHLELVNCK 315

Query: 348 LNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGN--SFWGSIP 405
                            +L+ L  +SN        S  +L +L++L LS N  SF G   
Sbjct: 316 FGQFPTLKL-------KSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 406 SSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLES 465
            S    +SL+ LDLS+NG+  T+  +F  L +L   +   ++ + + + S F++L+ L  
Sbjct: 367 QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 466 FRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGIS 525
             +            S+        +            F       + L  + +      
Sbjct: 426 LDI------------SHT-----HTRVA----------FNGIFNGLSSLEVLKMAGNSFQ 458

Query: 526 DTIPGDWFSKLSSEITYLILSNNQIKGKLPRQM-NSPNLRSIDLSSNHFEGTLPLWSTNA 584
           +    D F++L + +T+L LS  Q++   P    +  +L+ +++S N+F           
Sbjct: 459 ENFLPDIFTELRN-LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 517

Query: 585 D---ELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSS--VCNLEDLQILSIR 639
           +    L    N       + +      L  L L+ N  +        +  ++D + L + 
Sbjct: 518 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVE 577

Query: 640 SNKLSGEFP 648
             ++    P
Sbjct: 578 VERMECATP 586

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  164 bits (418), Expect = 8e-43
 Identities = 96/474 (20%), Positives = 157/474 (33%), Gaps = 66/474 (13%)

Query: 124 SLLHLKYLD-TLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQ-LGSLSSLQ 181
            L  +  L+ +LDLSLN      I     +   L  L L  +  S  +    +  L+ L+
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNF--IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE 228

Query: 182 YLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLV 241
              L    F +      L   + + L GL +L +       LD+   D +   N L ++ 
Sbjct: 229 VHRLVLGEFRNEGN---LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285

Query: 242 ELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNS-------------------AIPPW 282
              L    ++ +     F        L+L    F                          
Sbjct: 286 SFSLVSVTIERVK---DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342

Query: 283 LFSLTSLTKLYLRWNF--FTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKS 340
              L SL  L L  N   F G           L+ LDLS N  +   +   F  L +L+ 
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLEH 400

Query: 341 LDLSANNLNGEV-HEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNS 399
           LD   +NL        F        NL YLD+S              L +L+ L+++GNS
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLR----NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

Query: 400 FWGSI-PSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFM 458
           F  +  P     L +L  LDLS   +    P +F  LS L   N+  N++   L    + 
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYK 515

Query: 459 NLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVI 518
            L  L+                S N      + + + +  Q  PS          L  + 
Sbjct: 516 CLNSLQVLDY------------SLN-----HIMTSKKQELQHFPSS---------LAFLN 549

Query: 519 LRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNH 572
           L     + T     F +   +   L++   +++   P       + S++++   
Sbjct: 550 LTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLNITCQM 603

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  132 bits (333), Expect = 4e-32
 Identities = 64/310 (20%), Positives = 117/310 (37%), Gaps = 46/310 (14%)

Query: 115 SCLGGKINPSLLHLKYLDTLDLSLNDFEGAE-IPEYFGQLKNLRYLNLSFSSFSGEIPPQ 173
           +   G    S + L  L+ LDLS N         +      +L+YL+LSF+     +   
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSN 391

Query: 174 LGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQA 233
              L  L++LD        +           + L  +S   +                  
Sbjct: 392 FLGLEQLEHLDF------QH-----------SNLKQMSEFSVF----------------- 417

Query: 234 VNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFS-LTSLTKL 292
              L +L+ L + +   +     + F   +S+ VL ++ NSF     P +F+ L +LT L
Sbjct: 418 -LSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475

Query: 293 YLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEV 352
            L         P  F +L  L+VL++S+N          +  L  L+ LD S N++    
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534

Query: 353 HEFFDGFSGRPNNLEYLDLSSNSLEGELPKS--LGNLKNLQYLRLSGNSFWGSIPSSIGN 410
            +    F   P++L +L+L+ N           L  +K+ + L +       + PS    
Sbjct: 535 KQELQHF---PSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 591

Query: 411 LSSLRKLDLS 420
           +  +  L+++
Sbjct: 592 M-PVLSLNIT 600

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  256 bits (656), Expect = 1e-74
 Identities = 94/628 (14%), Positives = 181/628 (28%), Gaps = 116/628 (18%)

Query: 261 NFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTG----HIPNEFANLKLLEVL 316
           +   ++ L L     +  +P  +  LT L  L L  +          P   +     E  
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 317 DLSNNLDLGGQLPKL-FGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNS 375
                      +          L    ++++     + +              +   SN+
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS----RITLKDTQIGQLSNN 194

Query: 376 LEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKL 435
           +   + K++  L  L+   +  + F            +       Y     T    +  L
Sbjct: 195 ITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS-----EYAQQYKTEDLKWDNL 248

Query: 436 SELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQI 495
            +L D  +        L       L  ++            + NV+ N       + I  
Sbjct: 249 KDLTDVEVYNCPNLTKLPTF-LKALPEMQ------------LINVACN-------RGISG 288

Query: 496 ENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLP 555
           E  +          V  ++  + +    +          K+   +  L    NQ++GKLP
Sbjct: 289 EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKK-LGMLECLYNQLEGKLP 347

Query: 556 RQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLS 615
              +   L S++L+ N                          +P N      +++ L  +
Sbjct: 348 AFGSEIKLASLNLAYNQITE----------------------IPANFCGFTEQVENLSFA 385

Query: 616 WNQLSGRIPS--SVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPS 673
            N+L   IP+     ++  +  +    N++       +                   +  
Sbjct: 386 HNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF-----------------DPLDP 427

Query: 674 SFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSG-------SLPLWISEN 726
           +     ++S + LSNN +S          + L+SI+L GN L+                N
Sbjct: 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK-N 486

Query: 727 LSSFFMLRLRSNLLSGDIPQ-RLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSE 785
                 + LR N L+      R   L  L  IDLS+N+FS   P    N S L       
Sbjct: 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR- 544

Query: 786 VFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSG 845
                                   N  D   N    + P+ I    +L  L +  N +  
Sbjct: 545 ------------------------NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK 580

Query: 846 AIPQSLSSLASLSKLNLSFNNLAGKIPS 873
            + + +    ++S L++  N       S
Sbjct: 581 -VNEKI--TPNISVLDIKDNPNISIDLS 605

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  238 bits (608), Expect = 6e-68
 Identities = 87/742 (11%), Positives = 192/742 (25%), Gaps = 219/742 (29%)

Query: 150 FGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSG 209
                 +  L+L     SG +P  +G L+ L+ L L      S+   +         +S 
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLAL-----GSHGEKVNERLFGPKGISA 131

Query: 210 LSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLD 269
             S +      +                                    P  +F+ +    
Sbjct: 132 NMSDEQKQKMRMHYQK--------------------------TFVDYDPREDFSDLIKDC 165

Query: 270 LSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLP 329
           ++ +    +I          T++    N  T  +      L  L    + N+  +   + 
Sbjct: 166 INSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENIC 224

Query: 330 KLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKN 389
           +                                    E  +               NLK+
Sbjct: 225 EA----------------------------------WENENSEYAQQYKTEDLKWDNLKD 250

Query: 390 LQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNG--TIPESFGKLSELVDANLLQNS 447
           L  + +        +P+ +  L  ++ ++++ N       + + +  L++      +Q  
Sbjct: 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ-- 308

Query: 448 WEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVW 507
                                        +  + YN      LK+  +            
Sbjct: 309 -----------------------------IIYIGYN-----NLKTFPV---------ETS 325

Query: 508 LQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQM--NSPNLRS 565
           LQ   +L  +      +   +P   F      +  L L+ NQI   +P      +  + +
Sbjct: 326 LQKMKKLGMLECLYNQLEGKLPA--FGSEIK-LASLNLAYNQITE-IPANFCGFTEQVEN 381

Query: 566 IDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSG---- 621
           +  + N  +                      P   +  S+   +  +  S+N++      
Sbjct: 382 LSFAHNKLKYI--------------------PNIFDAKSV-SVMSAIDFSYNEIGSVDGK 420

Query: 622 ---RIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSL 678
               +  +     ++  +                        ++SNN ++      F + 
Sbjct: 421 NFDPLDPTPFKGINVSSI------------------------NLSNNQISKFPKELFSTG 456

Query: 679 RSLSVLLLSNNNLSG-------GIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFF 731
             LS + L  N L+            + +N   LTSIDL  N+L+     + +  L    
Sbjct: 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLV 516

Query: 732 MLRLRSNLLSGDIPQRLCNLQNL------HIIDLSHNNFSGAIPRCIGNLSALVYGNNSE 785
            + L  N  S   P +  N   L      +  D   N      P  I    +L       
Sbjct: 517 GIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ----- 570

Query: 786 VFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSG 845
                                     + +  N++   + ++I     + +L++  N    
Sbjct: 571 --------------------------LQIGSNDIRK-VNEKI--TPNISVLDIKDNPNIS 601

Query: 846 AIPQSLSSLASLSKLNLSFNNL 867
                +          L ++  
Sbjct: 602 IDLSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  233 bits (597), Expect = 2e-66
 Identities = 103/740 (13%), Positives = 208/740 (28%), Gaps = 173/740 (23%)

Query: 49  EREGLLAFKESLTDPSGRLSSWVGQDCCKWN------------GVYCNNQSGHVTQLNLR 96
           +   L    ++L   +     +  Q    WN            GV  N+ +G VT L+L 
Sbjct: 31  DYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLE 89

Query: 97  NPYQLINGGVGDSTAYKGSCLGGKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNL 156
                                 G++  ++  L  L+ L L  +  +  E       +   
Sbjct: 90  G-----------------FGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISAN 132

Query: 157 RYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLL 216
                            +       + DL  D  +S+    ++   +             
Sbjct: 133 MSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI----------- 181

Query: 217 NLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFN 276
                                    ++      +  +  ++     T +    +  + F 
Sbjct: 182 --------------------TLKDTQIGQLSNNITFVSKAVM--RLTKLRQFYMGNSPFV 219

Query: 277 SAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILR 336
           +      +   +                 ++ NLK L  +++ N  +L  +LP     L 
Sbjct: 220 AENICEAWENENSEYAQQ-----YKTEDLKWDNLKDLTDVEVYNCPNL-TKLPTFLKALP 273

Query: 337 RLKSLDLSANNLNGEVHEFFDGFS----GRPNNLEYLDLSSNSL-EGELPKSLGNLKNLQ 391
            ++ ++++ N          D  +         ++ + +  N+L    +  SL  +K L 
Sbjct: 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLG 333

Query: 392 YLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGI 451
            L    N   G +P + G+   L  L+L+YN +        G   ++ + +   N  + I
Sbjct: 334 MLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI 392

Query: 452 LQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQ 511
                  ++  + +               SYN                            
Sbjct: 393 PNIFDAKSVSVMSAIDF------------SYN---------------------------- 412

Query: 512 TELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQ-MNSPNLRSIDLSS 570
            E+ SV  +N      +    F  ++  ++ + LSNNQI             L SI+L  
Sbjct: 413 -EIGSVDGKNFD---PLDPTPFKGIN--VSSINLSNNQISKFPKELFSTGSPLSSINLMG 466

Query: 571 NHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPS-SVCN 629
           N                 +  N       EN  +    L  + L +N+L+          
Sbjct: 467 NMLTE-------------IPKNSLK-DENENFKNT-YLLTSIDLRFNKLTKLSDDFRATT 511

Query: 630 LEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVL----- 684
           L  L  +                        D+S NS +   P+   +  +L        
Sbjct: 512 LPYLVGI------------------------DLSYNSFSK-FPTQPLNSSTLKGFGIRNQ 546

Query: 685 -LLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGD 743
                N      P  +  C  LT + +G N +   +   I+ N+S    L ++ N     
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKITPNISV---LDIKDNPNISI 602

Query: 744 IPQRLCNLQNLHIIDLSHNN 763
               +C      +  L ++ 
Sbjct: 603 DLSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  206 bits (526), Expect = 7e-57
 Identities = 78/525 (14%), Positives = 160/525 (30%), Gaps = 106/525 (20%)

Query: 383 SLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNG----TIPESFGKLSEL 438
           SL +   +  L L G    G +P +IG L+ L  L L  +G         P+        
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 439 VDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENC 498
                ++       Q++      R +                                  
Sbjct: 136 EQKQKMRMH----YQKTFVDYDPREDF--------------------------------- 158

Query: 499 QVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQM 558
                        ++L    + +     +I     S+++ + T +   +N I   + + +
Sbjct: 159 -------------SDLIKDCINSDPQQKSIKKS--SRITLKDTQIGQLSNNITF-VSKAV 202

Query: 559 -NSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWN 617
                LR   + ++ F           +    +  +          +L   L  + +   
Sbjct: 203 MRLTKLRQFYMGNSPFVAENIC--EAWENENSEYAQQYKTEDLKWDNL-KDLTDVEVYNC 259

Query: 618 QLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWG--------IDISNNSL-T 668
               ++P+ +  L ++Q++++  N+             +           I I  N+L T
Sbjct: 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319

Query: 669 GSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLS 728
             + +S   ++ L +L    N L G +P +  +   L S++L  NQ++  +P        
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE-IPANFCGFTE 377

Query: 729 SFFMLRLRSNLLSGDIPQRL--CNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEV 786
               L    N L   IP      ++  +  ID S+N       +    L    +   +  
Sbjct: 378 QVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN-- 434

Query: 787 FQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSG- 845
                                 V+SI+LS N ++    +     S L  +NL  N L+  
Sbjct: 435 ----------------------VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472

Query: 846 ------AIPQSLSSLASLSKLNLSFNNLAGKIPSLPNFNDPSIYE 884
                    ++  +   L+ ++L FN L            P +  
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVG 517

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 95.9 bits (239), Expect = 2e-20
 Identities = 27/255 (10%), Positives = 61/255 (23%), Gaps = 61/255 (23%)

Query: 648 PNCWYHSQMF-----WGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNC 702
            N             W  +   +        S  S   ++ L L     SG +P ++   
Sbjct: 45  KNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQL 104

Query: 703 TGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLR---SNLLSGDIPQRLCNLQ--NLHII 757
           T L  + LG +    +  L+  + +S+      +                     +L   
Sbjct: 105 TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKD 164

Query: 758 DLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWN 817
            ++ +    +I +                                         I    N
Sbjct: 165 CINSDPQQKSIKKSSRITLKD-------------------------------TQIGQLSN 193

Query: 818 NLTGQIPDEIGNLSALHILNLSHNQLSG-------------------AIPQSLSSLASLS 858
           N+T  +   +  L+ L    + ++                              +L  L+
Sbjct: 194 NITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLT 252

Query: 859 KLNLSFNNLAGKIPS 873
            + +       K+P+
Sbjct: 253 DVEVYNCPNLTKLPT 267

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  243 bits (622), Expect = 2e-73
 Identities = 96/326 (29%), Positives = 138/326 (42%), Gaps = 42/326 (12%)

Query: 575 GTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGR--IPSSVCNLED 632
            TL  W    D     +  + G L +       R+  L LS   L     IPSS+ NL  
Sbjct: 22  TTLSSWLPTTD---CCNRTWLGVLCDTDTQT-YRVNNLDLSGLNLPKPYPIPSSLANLPY 77

Query: 633 LQILSIRS-NKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNL 691
           L  L I   N L G  P           + I++ +++G+IP     +++L  L  S N L
Sbjct: 78  LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137

Query: 692 SGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNL 751
           SG +P S+ +   L  I   GN++SG++P         F  + +  N L+G IP    NL
Sbjct: 138 SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197

Query: 752 QNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNS 811
            NL  +DLS N   G      G+                                     
Sbjct: 198 -NLAFVDLSRNMLEGDASVLFGSDKNTQK------------------------------- 225

Query: 812 IDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKI 871
           I L+ N+L   +  ++G    L+ L+L +N++ G +PQ L+ L  L  LN+SFNNL G+I
Sbjct: 226 IHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 872 PSLPNFN--DPSIYEGNPLLCGAPLP 895
           P   N    D S Y  N  LCG+PLP
Sbjct: 285 PQGGNLQRFDVSAYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  178 bits (454), Expect = 4e-50
 Identities = 74/336 (22%), Positives = 123/336 (36%), Gaps = 72/336 (21%)

Query: 132 DTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGE--IPPQLGSLSSLQYLDLYADS 189
            T D     + G  + +   Q   +  L+LS  +      IP  L +L  L +L +    
Sbjct: 29  PTTDCCNRTWLG-VLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG--- 84

Query: 190 FSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQ 249
                         +N L G                                        
Sbjct: 85  -------------GINNLVG---------------------------------------- 91

Query: 250 LQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFAN 309
              IP ++     T +  L ++  + + AIP +L  + +L  L   +N  +G +P   ++
Sbjct: 92  --PIPPAIA--KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147

Query: 310 LKLLEVLDLSNNLDLGGQLPKLFGILRRL-KSLDLSANNLNGEVHEFFDGFSGRPNNLEY 368
           L  L  +    N  + G +P  +G   +L  S+ +S N L G++   F        NL +
Sbjct: 148 LPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-----NLAF 201

Query: 369 LDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTI 428
           +DLS N LEG+     G+ KN Q + L+ NS    +   +G   +L  LDL  N + GT+
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTL 260

Query: 429 PESFGKLSELVDANLLQNSWEG-ILQESQFMNLKRL 463
           P+   +L  L   N+  N+  G I Q          
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS 296

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  169 bits (431), Expect = 4e-47
 Identities = 86/377 (22%), Positives = 142/377 (37%), Gaps = 85/377 (22%)

Query: 44  LCLDAEREGLLAFKESLTDPSGRLSSWVGQ-DCC--KWNGVYCNN--QSGHVTQLNLRN- 97
           LC   +++ LL  K+ L +P+  LSSW+   DCC   W GV C+   Q+  V  L+L   
Sbjct: 2   LCNPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60

Query: 98  ---PYQLINGGVGDSTA------YKGSCLGGKINPSLLHLKYLDTLDLSLNDFEGAEIPE 148
                  I   + +            + L G I P++  L  L  L ++  +  G  IP+
Sbjct: 61  NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPD 119

Query: 149 YFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLS 208
           +  Q+K L  L+ S+++ SG +PP + SL +L  +    +     SG++       +   
Sbjct: 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI---SGAIP------DSYG 170

Query: 209 GLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVL 268
             S L                             + +   +L G                
Sbjct: 171 SFSKL--------------------------FTSMTISRNRLTG---------------- 188

Query: 269 DLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQL 328
                     IPP   +L +L  + L  N   G     F + K  + + L+ N  L   L
Sbjct: 189 ---------KIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-LAFDL 237

Query: 329 PKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLK 388
            K+ G+ + L  LDL  N + G + +           L  L++S N+L GE+P+  GNL+
Sbjct: 238 GKV-GLSKNLNGLDLRNNRIYGTLPQGLTQLK----FLHSLNVSFNNLCGEIPQG-GNLQ 291

Query: 389 NLQYLRLSGNSFWGSIP 405
                  + N      P
Sbjct: 292 RFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  143 bits (364), Expect = 5e-38
 Identities = 67/341 (19%), Positives = 116/341 (34%), Gaps = 70/341 (20%)

Query: 268 LDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTG--HIPNEFANLKLLEVLDLSNNLDLG 325
            D    ++   +         +  L L          IP+  ANL  L  L +    +L 
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 326 GQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLG 385
           G +P     L                              L YL ++  ++ G +P  L 
Sbjct: 91  GPIPPAIAKLT----------------------------QLHYLYITHTNVSGAIPDFLS 122

Query: 386 NLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDA-NLL 444
            +K L  L  S N+  G++P SI +L +L  +    N ++G IP+S+G  S+L  +  + 
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182

Query: 445 QNSWEG-ILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPS 503
           +N   G I      +NL  +               ++S N                +   
Sbjct: 183 RNRLTGKIPPTFANLNLAFV---------------DLSRN---------------MLEGD 212

Query: 504 FPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQM-NSPN 562
             V          + L    ++  +         + +  L L NN+I G LP+ +     
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKN-LNGLDLRNNRIYGTLPQGLTQLKF 269

Query: 563 LRSIDLSSNHFEGTLPLWS--TNADELFLQDNRF--SGPLP 599
           L S+++S N+  G +P        D     +N+     PLP
Sbjct: 270 LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  233 bits (597), Expect = 8e-67
 Identities = 109/612 (17%), Positives = 190/612 (31%), Gaps = 75/612 (12%)

Query: 241 VELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFT 300
           +  +    +L  +P  +P    +S   +DLS N           + + L  L L      
Sbjct: 14  ITYQCMDQKLSKVPDDIP----SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE 69

Query: 301 GHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFS 360
                 +  L  L  L L+ N  +    P  F  L  L++L      L            
Sbjct: 70  TIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI 128

Query: 361 GRPNNLEYLDLSSNSLEG-ELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLR---- 415
                L+ L+++ N +   +LP    NL NL ++ LS N       + +  L        
Sbjct: 129 ----TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL 184

Query: 416 KLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKK 475
            LD+S N ++    ++F  +  L +  L  N     + ++   NL  L   RL     K 
Sbjct: 185 SLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243

Query: 476 FVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSK 535
                 +       L  + I+                              +     F  
Sbjct: 244 ERNLEIFEPSIMEGLCDVTIDE--------------------FRLTYTNDFSDDIVKFHC 283

Query: 536 LSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFS 595
           L++ ++ + L+   IK  L         +S+ +     +    L       L L  N+ S
Sbjct: 284 LAN-VSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGS 341

Query: 596 GPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLE--DLQILSIRSNKLSGEFPNCWYH 653
                     +P L  L LS N LS     S  +L    L+ L +  N         +  
Sbjct: 342 ISFK---KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMG 397

Query: 654 SQMFWGIDISNNSLTGSIP-SSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGG 712
            +    +D  +++L      S+F SL  L  L +S  N            T L ++ + G
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457

Query: 713 NQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCI 772
           N    +    +  N ++   L L    L          L  L ++++SHNN         
Sbjct: 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517

Query: 773 GNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSA 832
             L +L                                 +D S+N +            +
Sbjct: 518 NQLYSLST-------------------------------LDCSFNRIETSKGILQHFPKS 546

Query: 833 LHILNLSHNQLS 844
           L   NL++N ++
Sbjct: 547 LAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  221 bits (564), Expect = 3e-62
 Identities = 115/641 (17%), Positives = 193/641 (30%), Gaps = 120/641 (18%)

Query: 235 NMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYL 294
           ++  S   + L +  L+ +  S  F NF+ +  LDLS     +        L  L+ L L
Sbjct: 29  DIPSSTKNIDLSFNPLKILK-SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL 87

Query: 295 RWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNG-EVH 353
             N      P  F+ L  LE L       L        G L  LK L+++ N ++  ++ 
Sbjct: 88  TGNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLP 146

Query: 354 EFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNL----QYLRLSGNSFWGSIPSSIG 409
            +F   +    NL ++DLS N ++      L  L+        L +S N     I     
Sbjct: 147 AYFSNLT----NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI-DFIQDQAF 201

Query: 410 NLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLT 469
               L +L L  N  +  I ++            L       L   +F + + LE F  +
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCL--------QNLAGLHVHRLILGEFKDERNLEIFEPS 253

Query: 470 TEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIP 529
                                                 ++   ++T    R    +D   
Sbjct: 254 I-------------------------------------MEGLCDVTIDEFRLTYTNDFSD 276

Query: 530 GDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFL 589
                   + ++ + L+   IK  L         +S+ +     +    L       L L
Sbjct: 277 DIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTL 335

Query: 590 QDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLE--DLQILSIRSNKLSGEF 647
             N+ S          +P L  L LS N LS     S  +L    L+ L +  N      
Sbjct: 336 TMNKGSISFK---KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IM 391

Query: 648 PNCWYHSQMFWGIDISNNSLTGSIP-SSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLT 706
              +   +    +D  +++L      S+F SL  L  L +S  N            T L 
Sbjct: 392 SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN 451

Query: 707 SIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSG 766
           ++ + GN    +                               N  NL  +DLS      
Sbjct: 452 TLKMAGNSFKDNTL------------------------SNVFANTTNLTFLDLSKCQLEQ 487

Query: 767 AIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDE 826
                   L  L                                 +++S NNL       
Sbjct: 488 ISWGVFDTLHRLQL-------------------------------LNMSHNNLLFLDSSH 516

Query: 827 IGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNL 867
              L +L  L+ S N++  +         SL+  NL+ N++
Sbjct: 517 YNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  199 bits (509), Expect = 8e-55
 Identities = 98/607 (16%), Positives = 172/607 (28%), Gaps = 107/607 (17%)

Query: 121 INPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSL 180
            + S  +   L  LDLS  + E     + +  L +L  L L+ +      P     L+SL
Sbjct: 48  KSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106

Query: 181 QYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSL 240
           + L                       L+ L S  +                     L +L
Sbjct: 107 ENLVAVE-----------------TKLASLESFPIGQ-------------------LITL 130

Query: 241 VELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLT----KLYLRW 296
            +L + +  +    L   F N T++  +DLS N   +     L  L         L +  
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190

Query: 297 NFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFF 356
           N         F  +K L  L L  N +    +      L  L    L       E +   
Sbjct: 191 NPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249

Query: 357 ---DGFSGRPN-NLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLS 412
                  G  +  ++   L+  +   +       L N+  + L+G S        +    
Sbjct: 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHF 307

Query: 413 SLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEP 472
             + L +    +          L  L    L  N      ++    +L  L         
Sbjct: 308 KWQSLSIIRCQLKQFPTLDLPFLKSL---TLTMNKGSISFKKVALPSLSYL--------- 355

Query: 473 TKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDW 532
                 ++S N      L                       L  + L   G    I    
Sbjct: 356 ------DLSRN-----ALSFS--------GCCSYSDLGTNSLRHLDLSFNGA--IIMSAN 394

Query: 533 FSKLSSEITYLILSNNQIKGKLPRQ--MNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQ 590
           F  L   + +L   ++ +K        ++   L  +D+S  + +                
Sbjct: 395 FMGLEE-LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI-------------DF 440

Query: 591 DNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSV-CNLEDLQILSIRSNKLSGEFPN 649
           D  F G         +  L  L ++ N       S+V  N  +L  L +   +L      
Sbjct: 441 DGIFLG---------LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491

Query: 650 CWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSID 709
            +        +++S+N+L     S +  L SLS L  S N +             L   +
Sbjct: 492 VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFN 551

Query: 710 LGGNQLS 716
           L  N ++
Sbjct: 552 LTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  191 bits (486), Expect = 8e-52
 Identities = 114/591 (19%), Positives = 176/591 (29%), Gaps = 93/591 (15%)

Query: 301 GHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFS 360
           G +      +  +    +   L    ++P    I    K++DLS N L       F  FS
Sbjct: 2   GSLNPCIEVVPNITYQCMDQKLS---KVPD--DIPSSTKNIDLSFNPLKILKSYSFSNFS 56

Query: 361 GRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLS 420
                L++LDLS   +E    K+   L +L  L L+GN      P S   L+SL  L   
Sbjct: 57  ----ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112

Query: 421 YNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNV 480
              +        G+L  L   N+  N        + F NL  L    L            
Sbjct: 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL------------ 160

Query: 481 SYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEI 540
           SYN      +++I +             +      S+ +    I   I    F  +   +
Sbjct: 161 SYN-----YIQTITVN------DLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIK--L 206

Query: 541 TYLILSNNQIKGKLPRQ--MNSPNLRSIDLSSNHFEGTLPLWSTNAD-----------EL 587
             L L  N     + +    N   L    L    F+    L                 E 
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266

Query: 588 FLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEF 647
            L               L   +  + L+   +       V      Q LSI   +L    
Sbjct: 267 RLTYTNDFSDDIVKFHCL-ANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFP 323

Query: 648 PNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQN--CTGL 705
                  +    + ++ N    SI     +L SLS L LS N LS    CS  +     L
Sbjct: 324 TLDLPFLKS---LTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL 378

Query: 706 TSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQR-LCNLQNLHIIDLSHNNF 764
             +DL  N     +       L     L  + + L          +L+ L  +D+S+ N 
Sbjct: 379 RHLDLSFNGAI-IMSANFM-GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436

Query: 765 SGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIP 824
                     L++L                                 + ++ N+      
Sbjct: 437 KIDFDGIFLGLTSLNT-------------------------------LKMAGNSFKDNTL 465

Query: 825 DEI-GNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSL 874
             +  N + L  L+LS  QL         +L  L  LN+S NNL     S 
Sbjct: 466 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH 516

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  149 bits (377), Expect = 1e-37
 Identities = 77/353 (21%), Positives = 130/353 (36%), Gaps = 23/353 (6%)

Query: 120 KINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSS 179
            I         L  L L  N      +      L  L    L    F  E   ++   S 
Sbjct: 195 FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254

Query: 180 LQYL-DLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLP 238
           ++ L D+  D F     +    + ++     L+++  ++L  V + +     L+ V    
Sbjct: 255 MEGLCDVTIDEFRLTYTN--DFSDDIVKFHCLANVSAMSLAGVSIKY-----LEDVPKHF 307

Query: 239 SLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNF 298
               L +  CQL+      P ++   +  L L+ N  +  I     +L SL+ L L  N 
Sbjct: 308 KWQSLSIIRCQLK----QFPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNA 361

Query: 299 FTGHIPNEFANLKL--LEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFF 356
            +      +++L    L  LDLS N      +   F  L  L+ LD   + L       F
Sbjct: 362 LSFSGCCSYSDLGTNSLRHLDLSFN--GAIIMSANFMGLEELQHLDFQHSTLKRVTE--F 417

Query: 357 DGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSI-GNLSSLR 415
             F      L YLD+S  + + +       L +L  L+++GNSF  +  S++  N ++L 
Sbjct: 418 SAFLSLE-KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476

Query: 416 KLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRL 468
            LDLS   +       F  L  L   N+  N+   +   S +  L  L +   
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL-DSSHYNQLYSLSTLDC 528

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  102 bits (257), Expect = 8e-23
 Identities = 50/232 (21%), Positives = 81/232 (34%), Gaps = 14/232 (6%)

Query: 119 GKINPSLLHLKYLDTLDLSLNDFEG-AEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSL 177
           G I+   + L  L  LDLS N                +LR+L+LSF+     +      L
Sbjct: 340 GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGL 398

Query: 178 SSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNML 237
             LQ+LD    +    +          +    L  L  L++ +                L
Sbjct: 399 EELQHLDFQHSTLKRVT--------EFSAFLSLEKLLYLDISYTNTKIDFDGIFLG---L 447

Query: 238 PSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWN 297
            SL  L++     +   LS  F N T+++ LDLS+            +L  L  L +  N
Sbjct: 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507

Query: 298 FFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLN 349
                  + +  L  L  LD S N  +      L    + L   +L+ N++ 
Sbjct: 508 NLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.2 bits (136), Expect = 3e-08
 Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 12/146 (8%)

Query: 117 LGGKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGS 176
                +   L L  L+TL ++ N F+   +   F    NL +L+LS             +
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495

Query: 177 LSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNM 236
           L  LQ L++     S N+    L   + +  + L SL  L+  F +++            
Sbjct: 496 LHRLQLLNM-----SHNN----LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF--- 543

Query: 237 LPSLVELRLHYCQLQGIPLSLPFINF 262
             SL    L    +  I     F+ +
Sbjct: 544 PKSLAFFNLTNNSVACICEHQKFLQW 569

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  238 bits (609), Expect = 2e-66
 Identities = 98/674 (14%), Positives = 195/674 (28%), Gaps = 153/674 (22%)

Query: 268 LDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQ 327
            +   + +       L +   +T L L      G +P+    L  L+VL    + +    
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 328 LPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEG--------- 378
                       + D+S    +     +   F      L   DL  +++           
Sbjct: 364 RL----FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419

Query: 379 -------------------ELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDL 419
                               + K++  L  LQ +  + + F     +           + 
Sbjct: 420 DSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPF-----TYDNIAVDWEDANS 474

Query: 420 SYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFN 479
            Y         S+  L +L D  L        L +    +L  L+S  +           
Sbjct: 475 DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNI----------- 522

Query: 480 VSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSE 539
            + N     R  S                    ++    +    + +        K+   
Sbjct: 523 -ACN-----RGISAAQLKADWT-RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVK- 574

Query: 540 ITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLP 599
           +  L   +N+++  L     +  L  + L  N  E                       +P
Sbjct: 575 LGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIEE----------------------IP 611

Query: 600 ENIGSLMPRLQRLYLSWNQLSGRIPS--SVCNLEDLQILSIRSNKLSGEFPNCWYHSQMF 657
           E+  +   +++ L  S N+L   IP+  +  ++  +  +    NK+  E  N       +
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670

Query: 658 WG-----IDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLS-------GGIPCSLQNCTGL 705
            G     + +S N +       F +   +S ++LSNN ++            + +N   L
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 706 TSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFS 765
           T+IDL  N+L+      +S++                        L  L  +D+S+N FS
Sbjct: 731 TTIDLRFNKLTS-----LSDDFR-------------------ATTLPYLSNMDVSYNCFS 766

Query: 766 GAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPD 825
              P    N S L                                  D   N +  Q P 
Sbjct: 767 S-FPTQPLNSSQLKAFGIRH-------------------------QRDAEGNRILRQWPT 800

Query: 826 EIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNL-AGKIPSLPNFNDPS--- 881
            I    +L  L +  N +   + + L     L  L+++ N   +  + S+  + +     
Sbjct: 801 GITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYV 857

Query: 882 -IYEGNPLLCGAPL 894
            +Y+    + G   
Sbjct: 858 LLYDKTQDIRGCDA 871

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  224 bits (572), Expect = 1e-61
 Identities = 104/705 (14%), Positives = 204/705 (28%), Gaps = 134/705 (19%)

Query: 56  FKESLTDPSGRLSSW-VGQDCCKWNGVYCN--NQSGHVTQLNLRNPYQLINGGVGDSTAY 112
           +     + +    +W   ++   W        + +G VT L+L        G        
Sbjct: 288 YYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAG-----FG-------- 334

Query: 113 KGSCLGGKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPP 172
                 G++  ++  L  L  L    +    +       +L                   
Sbjct: 335 ----AKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKM 390

Query: 173 QLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQ 232
            L     L   DL  D+ + N             +  +     ++L              
Sbjct: 391 FLDYDQRLNLSDLLQDAINRN-----------PEMKPIKKDSRISL-------------- 425

Query: 233 AVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKL 292
                    ++     ++  I  ++     T + ++  + + F                 
Sbjct: 426 ------KDTQIGNLTNRITFISKAIQ--RLTKLQIIYFANSPFTYDNIA-----VDWEDA 472

Query: 293 YLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEV 352
              +     +    ++NLK L  ++L N  ++  QLP     L  L+SL+++ N      
Sbjct: 473 NSDYAKQYENEELSWSNLKDLTDVELYNCPNM-TQLPDFLYDLPELQSLNIACNRGISAA 531

Query: 353 HEFFDGFS-----GRPNNLEYLDLSSNSLEGELPKS--LGNLKNLQYLRLSGNSFWGSIP 405
               D             ++   +  N+LE E P S  L  +  L  L    N       
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKV--RHL 588

Query: 406 SSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLES 465
            + G    L  L L YN +     +      ++       N  + I       ++  + S
Sbjct: 589 EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGS 648

Query: 466 FRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGIS 525
                          SYN          +I +     S  +        ++V L    I 
Sbjct: 649 VDF------------SYN----------KIGSEGRNISCSMDDYKGINASTVTLSYNEIQ 686

Query: 526 DTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNAD 585
              P + F+  S  I+ +ILSNN +   +P     P   +               +    
Sbjct: 687 -KFPTELFATGSP-ISTIILSNNLM-TSIPENSLKPKDGNYK------------NTYLLT 731

Query: 586 ELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSG 645
            + L+ N+ +    +   + +P L  + +S+N  S   P+   N   L+   IR  +   
Sbjct: 732 TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR--- 787

Query: 646 EFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGL 705
                          D   N +    P+   +  SL  L + +N++   +   L     L
Sbjct: 788 ---------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQL 829

Query: 706 TSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCN 750
             +D+  N    S+ +      S    +     +L  D  Q +  
Sbjct: 830 YILDIADNPNI-SIDV-----TSVCPYIEAGMYVLLYDKTQDIRG 868

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 97.6 bits (243), Expect = 6e-21
 Identities = 34/276 (12%), Positives = 77/276 (27%), Gaps = 47/276 (17%)

Query: 617 NQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFG 676
            + +  I          + L  ++ +      N      + W  +   +           
Sbjct: 262 KETAEYIKDYKALKAIWEALDGKNWRYYSGTINN-TIHSLNWNFNKELDMWGDQPGVDLD 320

Query: 677 SLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLR 736
           +   ++ L L+     G +P ++   T L  +  G +  + S  L+  E L+       +
Sbjct: 321 NNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380

Query: 737 SNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVK 796
             +        L   Q L++ DL  +  +      +  +      +  +           
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE--MKPIKKDSRISLKD----------- 427

Query: 797 GRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSG----------- 845
                          I    N +T  I   I  L+ L I+  +++  +            
Sbjct: 428 -------------TQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDAN 473

Query: 846 --------AIPQSLSSLASLSKLNLSFNNLAGKIPS 873
                       S S+L  L+ + L       ++P 
Sbjct: 474 SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD 509

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.2 bits (151), Expect = 6e-10
 Identities = 25/204 (12%), Positives = 60/204 (29%), Gaps = 22/204 (10%)

Query: 117 LGGKINPSLLHLKYLDTLDLSLNDFE------GAEIPEYFGQLKNLRYLNLSFSSFSGEI 170
           +             + T+ LS N                +     L  ++L F+  +  +
Sbjct: 685 IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SL 743

Query: 171 PPQL--GSLSSLQYLDLYADSFSSNS-GSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVG 227
                  +L  L  +D+     S N   S      N + L         +    ++    
Sbjct: 744 SDDFRATTLPYLSNMDV-----SYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQW 798

Query: 228 ADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLT 287
              +      PSL++L++    ++ +   L       + +LD+++N   S     +    
Sbjct: 799 PTGITT---CPSLIQLQIGSNDIRKVDEKL----TPQLYILDIADNPNISIDVTSVCPYI 851

Query: 288 SLTKLYLRWNFFTGHIPNEFANLK 311
                 L ++        +   ++
Sbjct: 852 EAGMYVLLYDKTQDIRGCDALGIE 875

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  232 bits (595), Expect = 2e-66
 Identities = 123/638 (19%), Positives = 200/638 (31%), Gaps = 106/638 (16%)

Query: 267 VLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGG 326
             +      N  IP  L +  S   L   +N         F+ L  L  LDL+    +  
Sbjct: 16  TYNCENLGLNE-IPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYW 71

Query: 327 QLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGN 386
                F    RL +L L+AN L         G       L++L      +       L N
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK----ALKHLFFIQTGISSIDFIPLHN 127

Query: 387 LKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSEL--VDANLL 444
            K L+ L L  N               L+ LD   N ++    E    L +   +  NL 
Sbjct: 128 QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187

Query: 445 QNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSF 504
            N   GI  E    +    +S                       +  +IQ          
Sbjct: 188 GNDIAGI--EPGAFDSAVFQSLNFG-------GTQNLLVIFKGLKNSTIQ---------- 228

Query: 505 PVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQM-NSPNL 563
                    L      ++   D  P  +       +  + L  +               L
Sbjct: 229 --------SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGL 280

Query: 564 RSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRI 623
           + +DL++ H                         LP  +  L   L++L LS N+     
Sbjct: 281 QELDLTATHLSE----------------------LPSGLVGL-STLKKLVLSANKFENLC 317

Query: 624 PSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWG------IDISNNSLTGS--IPSSF 675
             S  N   L  LSI+ N    E       +           +D+S++ +  S       
Sbjct: 318 QISASNFPSLTHLSIKGNTKRLELG-----TGCLENLENLRELDLSHDDIETSDCCNLQL 372

Query: 676 GSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRL 735
            +L  L  L LS N        + + C  L  +DL   +L         +NL    +L L
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432

Query: 736 RSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVV 795
             +LL     Q    L  L  ++L  N+F     +   +L  L          +L     
Sbjct: 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL---------GRLEI--- 480

Query: 796 KGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLA 855
                           + LS+ +L+        +L  ++ ++LSHN+L+ +  ++LS L 
Sbjct: 481 ----------------LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524

Query: 856 SLSKLNLSFNNLAGKIPSL--PNFNDPSIY-EGNPLLC 890
            +  LNL+ N+++  +PSL        +I    NPL C
Sbjct: 525 GI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  226 bits (579), Expect = 3e-64
 Identities = 111/648 (17%), Positives = 187/648 (28%), Gaps = 137/648 (21%)

Query: 121 INPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSL 180
            N +   L  L  LDL+          + F     L  L L+ +         L    +L
Sbjct: 49  QNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107

Query: 181 QYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSL 240
           ++L                       +S +  + L N                     +L
Sbjct: 108 KHLFFIQ-----------------TGISSIDFIPLHN-------------------QKTL 131

Query: 241 VELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNF-F 299
             L L    +  I L         + VLD   N+ +      + SL   T L L  N   
Sbjct: 132 ESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190

Query: 300 TGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL-FGILRRLKSLDLSANNLNGEVHEFFDG 358
              I     +  + + L+     +L      L    ++ L        +        F+G
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250

Query: 359 FSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLD 418
                 ++E ++L  +        +      LQ L L+       +PS +  LS+L+KL 
Sbjct: 251 LC--EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLV 307

Query: 419 LSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVF 478
           LS N        S      L   ++  N+    L      NL+ L    L          
Sbjct: 308 LSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL---------- 357

Query: 479 NVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSS 538
             S++      +++    N                                      LS 
Sbjct: 358 --SHD-----DIETSDCCN---------------------------------LQLRNLSH 377

Query: 539 EITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPL 598
            +  L LS N+                  L +  F+    L     + L L   R     
Sbjct: 378 -LQSLNLSYNEPLS---------------LKTEAFKECPQL-----ELLDLAFTRLKVKD 416

Query: 599 PENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFW 658
            ++    +  L+ L LS + L          L  LQ L+++ N                 
Sbjct: 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK------------- 463

Query: 659 GIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGS 718
                         +S  +L  L +L+LS  +LS     +  +   +  +DL  N+L+ S
Sbjct: 464 --------GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT-S 514

Query: 719 LPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSG 766
             +    +L   + L L SN +S  +P  L  L     I+L  N    
Sbjct: 515 SSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  204 bits (522), Expect = 2e-56
 Identities = 101/548 (18%), Positives = 161/548 (29%), Gaps = 81/548 (14%)

Query: 339 KSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGN 398
           K+ +     L    +E        PN+ E L+ S N L      +   L NL +L L+  
Sbjct: 15  KTYNCENLGL----NEIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC 67

Query: 399 SFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFM 458
             +     +  +   L  L L+ N +      +      L     +Q     I       
Sbjct: 68  QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSI-DFIPLH 126

Query: 459 NLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVI 518
           N K LES  L              N      + SI++                  L  + 
Sbjct: 127 NQKTLESLYL------------GSN-----HISSIKLPKGFPTEK----------LKVLD 159

Query: 519 LRNVGISDTIPGDWFSKLSS-EITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTL 577
            +N  I   +  +  S L       L L+ N I G  P   +S   +S++         +
Sbjct: 160 FQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVI 218

Query: 578 PLWSTNAD-----ELFLQDNRFSGPLPENIGSL-MPRLQRLYLSWNQLSGRIPSSVCNLE 631
                N+          +D       P     L    ++ + L  +       ++     
Sbjct: 219 FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS 278

Query: 632 DLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNL 691
            LQ L + +  LS E P+          + +S N        S  +  SL+ L +  N  
Sbjct: 279 GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337

Query: 692 SGGI-PCSLQNCTGLTSIDLGGNQLSGS-LPLWISENLSSFFMLRLRSNLLSGDIPQRLC 749
              +    L+N   L  +DL  + +  S        NLS    L L  N       +   
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397

Query: 750 NLQNLHIIDLSHNNFSGAIPR-CIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIAD 808
               L ++DL+         +    NL  L                              
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV---------------------------- 429

Query: 809 VNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQ---SLSSLASLSKLNLSFN 865
              ++LS + L          L AL  LNL  N       Q   SL +L  L  L LSF 
Sbjct: 430 ---LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486

Query: 866 NLAGKIPS 873
           +L+     
Sbjct: 487 DLSSIDQH 494

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  188 bits (479), Expect = 8e-51
 Identities = 112/583 (19%), Positives = 187/583 (32%), Gaps = 92/583 (15%)

Query: 124 SLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYL 183
           +L   K L  L          +        K L  L L  +  S    P+      L+ L
Sbjct: 100 ALSGPKALKHLFFIQTGISSID-FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL 158

Query: 184 DLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVEL 243
           D   ++         L  ++++ L   ++L  LNL    +  +                L
Sbjct: 159 DFQNNAIHY------LSKEDMSSLQQATNLS-LNLNGNDIAGIEPGAFD----SAVFQSL 207

Query: 244 RLHYCQLQG-IPLSLPFINFTSISVLDLSENSFNSAIPPWLF---SLTSLTKLYLRWNFF 299
                Q    I   L      S+ +    +      I P +F      S+  + L+ ++F
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED-ISPAVFEGLCEMSVESINLQKHYF 266

Query: 300 TGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGF 359
                N F     L+ LDL+       +LP     L  LK L LSAN            F
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHL--SELPSGLVGLSTLKKLVLSANKFENLCQISASNF 324

Query: 360 SGRPNNLEYLDLSSNSLEGEL-PKSLGNLKNLQYLRLSGN--SFWGSIPSSIGNLSSLRK 416
                +L +L +  N+   EL    L NL+NL+ L LS +           + NLS L+ 
Sbjct: 325 P----SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380

Query: 417 LDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKF 476
           L+LSYN       E+F +  +L   +L     +    +S F NL  L+   L        
Sbjct: 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL-------- 432

Query: 477 VFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKL 536
               S++           ++                                    F  L
Sbjct: 433 ----SHS----------LLDI------------------------------SSEQLFDGL 448

Query: 537 SSEITYLILSNNQIKGKLPRQMNS----PNLRSIDLSSNHFEGTLPLWSTNAD---ELFL 589
            + + +L L  N       ++ NS      L  + LS            T+      + L
Sbjct: 449 PA-LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507

Query: 590 QDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPN 649
             NR +        S +  +  L L+ N +S  +PS +  L   + +++R N L     N
Sbjct: 508 SHNRLTS-SSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565

Query: 650 CWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLS 692
            ++          +   L  +  +   +   L  + LS+  LS
Sbjct: 566 IYFLEWY----KENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  178 bits (454), Expect = 2e-47
 Identities = 91/465 (19%), Positives = 157/465 (33%), Gaps = 48/465 (10%)

Query: 117 LGGKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSS-FSGEIPPQLG 175
           +     P     + L  LD   N        E    L+    L+L+ +      I P   
Sbjct: 141 ISSIKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF 199

Query: 176 SLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVN 235
             +  Q L+      + N   +    +N      + SL L     +  + +     + + 
Sbjct: 200 DSAVFQSLNF---GGTQNLLVIFKGLKNST----IQSLWLGTFEDMDDEDISPAVFEGLC 252

Query: 236 MLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLR 295
            + S+  + L       I  +  F  F+ +  LDL+    +  +P  L  L++L KL L 
Sbjct: 253 EM-SVESINLQKHYFFNISSNT-FHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLS 309

Query: 296 WNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEF 355
            N F        +N   L  L +  N             L  L+ LDLS +++       
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET-SDCC 368

Query: 356 FDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIP-SSIGNLSSL 414
                    +L+ L+LS N       ++      L+ L L+          S   NL  L
Sbjct: 369 NLQLRNLS-HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427

Query: 415 RKLDLSYNGMNGTIPESFGKLSELVDANLLQN--SWEGILQESQFMNLKRLESFRLTTEP 472
           + L+LS++ ++ +  + F  L  L   NL  N      I + +    L RLE        
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE-------- 479

Query: 473 TKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDW 532
               +  +S+       L SI                    +  V L +  ++ +   + 
Sbjct: 480 ----ILVLSFC-----DLSSID----------QHAFTSLKMMNHVDLSHNRLT-SSSIEA 519

Query: 533 FSKLSSEITYLILSNNQIKGKLPRQM-NSPNLRSIDLSSNHFEGT 576
            S L     YL L++N I   LP  +      R+I+L  N  + T
Sbjct: 520 LSHLKGI--YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  196 bits (501), Expect = 2e-52
 Identities = 135/640 (21%), Positives = 217/640 (33%), Gaps = 89/640 (13%)

Query: 133 TLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSS 192
           + D  +  +    + +    L     L LSF+            L  LQ L+L      S
Sbjct: 3   SFDGRIAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLEL-----GS 57

Query: 193 NSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQG 252
               L +          L +L++L+LG  K+  +  D  Q    L  L ELRL++C L  
Sbjct: 58  QYTPLTIDK---EAFRNLPNLRILDLGSSKIYFLHPDAFQ---GLFHLFELRLYFCGLSD 111

Query: 253 IPLS-LPFINFTSISVLDLSENSFNSAIPPWLFS-LTSLTKLYLRWNFFTGHIPNEFANL 310
             L    F N  +++ LDLS+N   S      F  L SL  +    N       +E   L
Sbjct: 112 AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171

Query: 311 KL--LEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEY 368
           +   L    L+ N             +   +++ L   ++           SG    ++ 
Sbjct: 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDV-----------SGNGWTVDI 220

Query: 369 LDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNL--SSLRKLDLSYNGMNG 426
               SN++      SL    ++       ++      ++   L  SS+R LDLS+  +  
Sbjct: 221 TGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS 280

Query: 427 TIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVP 486
                F  L +L   NL  N    I  +  F  L  L+   L            SYN   
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKINKI-ADEAFYGLDNLQVLNL------------SYN--- 324

Query: 487 PFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILS 546
              L  +          +        ++  + L+   I+  I    F  L   +  L L 
Sbjct: 325 --LLGEL----------YSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEK-LQTLDLR 370

Query: 547 NNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLM 606
           +N +          P++  I LS N    TLP  +  A+ + L +NR            +
Sbjct: 371 DNALT----TIHFIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRV 425

Query: 607 PRLQRLYLSWNQLSGRIPSSVC-NLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNN 665
           P LQ L L+ N+ S             L+ L +  N L   +                  
Sbjct: 426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE----------------- 468

Query: 666 SLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISE 725
             T      F  L  L VL L++N L+   P    + T L  + L  N+L+      +  
Sbjct: 469 --TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA 526

Query: 726 NLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFS 765
           NL     L +  N L    P       +L ++D++HN F 
Sbjct: 527 NLEI---LDISRNQLLAPNPD---VFVSLSVLDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  193 bits (493), Expect = 1e-51
 Identities = 121/640 (18%), Positives = 220/640 (34%), Gaps = 88/640 (13%)

Query: 266 SVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLG 325
            +      +  + +P     L +  +L L +N+      + F  L+ L++L+L +     
Sbjct: 7   RIAFYRFCNL-TQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL 62

Query: 326 GQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGEL--PKS 383
               + F  L  L+ LDL ++ +     + F G      +L  L L    L   +     
Sbjct: 63  TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF----HLFELRLYFCGLSDAVLKDGY 118

Query: 384 LGNLKNLQYLRLSGNSFWG-SIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLS--ELVD 440
             NLK L  L LS N      +  S G L+SL+ +D S N +          L    L  
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178

Query: 441 ANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQV 500
            +L  NS    +       +    +  L        + +VS N    + +      +  +
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLE-------ILDVSGN---GWTVDITGNFSNAI 228

Query: 501 GPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKL-SSEITYLILSNNQIKGKLPRQM- 558
             S    L +   +         I D    + F+ L  S + +L LS+  +   L  ++ 
Sbjct: 229 SKSQAFSLILAHHIMGAGFGFHNIKD-PDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVF 286

Query: 559 -NSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWN 617
               +L+ ++L+ N                 + D  F G         +  LQ L LS+N
Sbjct: 287 ETLKDLKVLNLAYNKINK-------------IADEAFYG---------LDNLQVLNLSYN 324

Query: 618 QLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGS 677
            L     S+   L  +  + ++ N ++      +   +    +D+ +N+LT     +   
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHF 379

Query: 678 LRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRS 737
           + S+  + LS N L        +       I L  N+L     L+    +    +L L  
Sbjct: 380 IPSIPDIFLSGNKLV----TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ 435

Query: 738 NLLSGDIPQRLC-NLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVK 796
           N  S     +      +L  + L  N    A    +            +VF+ L      
Sbjct: 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL----------CWDVFEGL------ 479

Query: 797 GRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLAS 856
                     + +  + L+ N L    P    +L+AL  L+L+ N+L+      L +  +
Sbjct: 480 ----------SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA--N 527

Query: 857 LSKLNLSFNNLAGKIPSLPNFNDPSIYEGNPLLCGAPLPT 896
           L  L++S N L    P +           N  +C   L T
Sbjct: 528 LEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELST 567

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  169 bits (430), Expect = 1e-43
 Identities = 116/593 (19%), Positives = 199/593 (33%), Gaps = 99/593 (16%)

Query: 124 SLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQ-LGSLSSLQY 182
           S   L+ L  L+L           E F  L NLR L+L  S     + P     L  L  
Sbjct: 43  SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFE 101

Query: 183 LDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVE 242
           L L           L+       +   L +L  L+L   ++  +      +   L SL  
Sbjct: 102 LRL-----YFCG--LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP--SFGKLNSLKS 152

Query: 243 LRLHYCQLQGIP-LSLPFINFTSISVLDLSENSFNSAIP------PWLFSLTSLTKLYLR 295
           +     Q+  +    L  +   ++S   L+ NS  S +          F    L  L + 
Sbjct: 153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS 212

Query: 296 WNFFTGHIPNEFAN------------LKLLEVLDLSNNLDLGGQLPKLFGILRR--LKSL 341
            N +T  I   F+N               +       + ++       F  L R  ++ L
Sbjct: 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH-NIKDPDQNTFAGLARSSVRHL 271

Query: 342 DLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFW 401
           DLS   +       F+       +L+ L+L+ N +     ++   L NLQ L LS N   
Sbjct: 272 DLSHGFVFSLNSRVFETLK----DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327

Query: 402 GSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLK 461
               S+   L  +  +DL  N +     ++F  L +L   +L  N        +    + 
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN------ALTTIHFIP 381

Query: 462 RLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRN 521
            +    L            S N     +L ++   N                   + L  
Sbjct: 382 SIPDIFL------------SGN-----KLVTLPKINLT--------------ANLIHLSE 410

Query: 522 VGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQM--NSPNLRSIDLSSNHFEGTLPL 579
             + +     +  ++   +  LIL+ N+       Q    +P+L  + L  N  +     
Sbjct: 411 NRLENLDILYFLLRVPH-LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ----- 464

Query: 580 WSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIR 639
                         +   L  ++   +  LQ LYL+ N L+   P    +L  L+ LS+ 
Sbjct: 465 ------------LAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLN 512

Query: 640 SNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLS 692
           SN+L+    +    + +   +DIS N L    P  F    SLSVL +++N   
Sbjct: 513 SNRLT-VLSHNDLPANLEI-LDISRNQLLAPNPDVF---VSLSVLDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 4/66 (6%)

Query: 808 DVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNL 867
           D       + NLT Q+P     L+    L LS N +      S   L  L  L L     
Sbjct: 5   DGRIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT 60

Query: 868 AGKIPS 873
              I  
Sbjct: 61  PLTIDK 66

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  184 bits (470), Expect = 6e-50
 Identities = 117/558 (20%), Positives = 190/558 (34%), Gaps = 57/558 (10%)

Query: 211 SSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDL 270
            S K L+L F  L H+G+    +    P L  L L  C++Q I     + + + +S L L
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFS---FPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLIL 83

Query: 271 SENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPK 330
           + N   S        L+SL KL                +LK L+ L++++NL    +LP+
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 331 LFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNL 390
            F  L  L+ LDLS+N +              P     LDLS N +   +         L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRL 202

Query: 391 QYLRLSGNSFWGSIPS-SIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWE 449
             L L  N    ++    I  L+ L    L                 E  +   L+    
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG--------------EFRNEGNLEK--- 245

Query: 450 GILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQ 509
               +S    L  L            ++ ++   +     + S  + +  +         
Sbjct: 246 --FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FS 301

Query: 510 VQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLS 569
                  + L N       P      L      L  ++N+  G    +++ P+L  +DLS
Sbjct: 302 YNFGWQHLELVNCKF-GQFPTLKLKSL----KRLTFTSNKG-GNAFSEVDLPSLEFLDLS 355

Query: 570 SNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCN 629
            N                      F G   ++       L+ L LS+N +   + S+   
Sbjct: 356 RNGL-------------------SFKGCCSQSDFGT-TSLKYLDLSFNGVI-TMSSNFLG 394

Query: 630 LEDLQILSIRSNKLSGEFPNC-WYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSN 688
           LE L+ L  + + L        +   +    +DIS+     +    F  L SL VL ++ 
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 689 NNLSGGI-PCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQR 747
           N+      P        LT +DL   QL   L      +LSS  +L + SN L       
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513

Query: 748 LCNLQNLHIIDLSHNNFS 765
              L +L  I L  N + 
Sbjct: 514 FDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  180 bits (458), Expect = 2e-48
 Identities = 112/537 (20%), Positives = 184/537 (34%), Gaps = 51/537 (9%)

Query: 245 LHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFS-LTSLTKLYLRWNFFTGHI 303
                   IP +LP     S   LDLS N     +  + F     L  L L         
Sbjct: 14  CMELNFYKIPDNLP----FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 304 PNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRP 363
              + +L  L  L L+ N  +       F  L  L+ L     NL    +          
Sbjct: 69  DGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK--- 124

Query: 364 NNLEYLDLSSNSL-EGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLR----KLD 418
             L+ L+++ N +   +LP+   NL NL++L LS N       + +  L  +      LD
Sbjct: 125 -TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 419 LSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVF 478
           LS N MN   P +F ++  L    L  N     + ++    L  LE  RL     +    
Sbjct: 184 LSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

Query: 479 NVSYNWVPPFRLKSIQIENCQ------VGPSFPVWLQVQTELTSVILRNVGISDTIPGDW 532
              ++      L ++ IE  +                  T ++S  L +V I       +
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY 302

Query: 533 FSKLSS-----------------EITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFE- 574
                                   +  L  ++N+  G    +++ P+L  +DLS N    
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG-GNAFSEVDLPSLEFLDLSRNGLSF 361

Query: 575 ----GTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSV-CN 629
                     +T+   L L  N     +  N   L  +L+ L    + L      SV  +
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGL-EQLEHLDFQHSNLKQMSEFSVFLS 419

Query: 630 LEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPS-SFGSLRSLSVLLLSN 688
           L +L  L I        F   +        + ++ NS   +     F  LR+L+ L LS 
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 689 NNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIP 745
             L    P +  + + L  +++  NQL  S+P  I + L+S   + L +N      P
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  159 bits (405), Expect = 2e-41
 Identities = 110/553 (19%), Positives = 183/553 (33%), Gaps = 65/553 (11%)

Query: 333 GILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQY 392
            +    K+LDLS N L       F  F      L+ LDLS   ++     +  +L +L  
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFP----ELQVLDLSRCEIQTIEDGAYQSLSHLST 80

Query: 393 LRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGIL 452
           L L+GN        +   LSSL+KL      +        G L  L + N+  N  +   
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 453 QESQFMNLKRLESFRLTT---EPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQ 509
               F NL  LE   L++   +        V +    P    S+ +    +         
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM--PLLNLSLDLSLNPMN-FIQPGAF 197

Query: 510 VQTELTSVILRNVGISDTIPGDWFSKLSS-EITYLILSNNQIKGKLPRQMNS--PNLRSI 566
            +  L  + LRN   S  +       L+  E+  L+L   + +G L +   S    L ++
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 567 DLSSNHFEGTLPLWSTNADELF----------LQDNRFSGPLPENIGSLMPRLQRLYLSW 616
            +        L  +  +  +LF          L           +       L+ +   +
Sbjct: 258 TIEEFRLAY-LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF 316

Query: 617 NQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLT--GSIPSS 674
            Q           L+ L+ L+  SNK    F      S  F  +D+S N L+  G    S
Sbjct: 317 GQFPT------LKLKSLKRLTFTSNKGGNAFSEVDLPSLEF--LDLSRNGLSFKGCCSQS 368

Query: 675 FGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLR 734
                SL  L LS N +   +  +      L  +D   + L       +  +L +   L 
Sbjct: 369 DFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 735 LRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRV 794
           +               L +L ++ ++ N+F                    ++F +L    
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL--------------PDIFTELRN-- 471

Query: 795 VKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSL 854
                         +  +DLS   L    P    +LS+L +LN++ NQL          L
Sbjct: 472 --------------LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517

Query: 855 ASLSKLNLSFNNL 867
            SL K+ L  N  
Sbjct: 518 TSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  135 bits (342), Expect = 2e-33
 Identities = 78/360 (21%), Positives = 120/360 (33%), Gaps = 34/360 (9%)

Query: 120 KINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGE---IPPQLGS 176
            I P       L  L L  N      +      L  L    L    F  E         +
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 177 LSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNM 236
           L  L  L +     +     L       N L+ +SS  L+++   ++     ++      
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-----G 305

Query: 237 LPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRW 296
              L  +   + Q        P +   S+  L  + N   +A       L SL  L L  
Sbjct: 306 WQHLELVNCKFGQ-------FPTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSR 356

Query: 297 NFFT--GHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHE 354
           N  +  G           L+ LDLS N      +   F  L +L+ LD   +NL      
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFN--GVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 414

Query: 355 FFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSI-GNLSS 413
                     NL YLD+S              L +L+ L+++GNSF  +    I   L +
Sbjct: 415 ---SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471

Query: 414 LRKLDLSYNGMNGTIPESFGKLSEL----VDANLLQNSWEGILQESQFMNLKRLESFRLT 469
           L  LDLS   +    P +F  LS L    + +N L++     + +  F  L  L+   L 
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-----VPDGIFDRLTSLQKIWLH 526

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  132 bits (334), Expect = 2e-32
 Identities = 91/514 (17%), Positives = 185/514 (35%), Gaps = 94/514 (18%)

Query: 124 SLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSF-SGEIPPQLGSLSSLQY 182
           +   L  L  L     +          G LK L+ LN++ +   S ++P    +L++L++
Sbjct: 95  AFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153

Query: 183 LDLYADSFSSNSGSLALHAQNLNWLSGLSSLKL-LNLGFVKLDHVGADWLQAVNMLPSLV 241
           LDL ++   S      ++  +L  L  +  L L L+L    ++ +     +       L 
Sbjct: 154 LDLSSNKIQS------IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK----EIRLH 203

Query: 242 ELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNS-----AIPPWLF-SLTSLTKLYLR 295
           +L L         +         + V  L    F +              L +LT    R
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 296 ---WNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL--FGILRRLKSLDLSANNLNG 350
               +++   I + F  L  +    L +       + ++  F      + L+L       
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSV-----TIERVKDFSYNFGWQHLELVNCKFGQ 318

Query: 351 EVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGN--SFWGSIPSSI 408
                    + +  +L+ L  +SN        S  +L +L++L LS N  SF G    S 
Sbjct: 319 FP-------TLKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 409 GNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRL 468
              +SL+ LDLS+NG+  T+  +F  L +L   +   ++ + + + S F++L+ L    +
Sbjct: 370 FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 469 TTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTI 528
                       S+        +                    + L  + +      +  
Sbjct: 429 ------------SHT-----HTRVAFNGI----------FNGLSSLEVLKMAGNSFQENF 461

Query: 529 PGDWFSKLSSEITYLILSNNQIKGKLPRQM--NSPNLRSIDLSSNHFEGTLPLWSTNADE 586
             D F++L + +T+L LS  Q++ +L      +  +L+ ++++SN  +            
Sbjct: 462 LPDIFTELRN-LTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKS----------- 508

Query: 587 LFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLS 620
                      +P+ I   +  LQ+++L  N   
Sbjct: 509 -----------VPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 91.3 bits (227), Expect = 4e-19
 Identities = 45/200 (22%), Positives = 70/200 (35%), Gaps = 13/200 (6%)

Query: 123 PSLLHLKYLDTLDLSLNDFEGAEI-PEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQ 181
            S + L  L+ LDLS N         +      +L+YL+LSF+     +      L  L+
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE 399

Query: 182 YLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLV 241
           +LD    +    S          +    L +L  L++                  L SL 
Sbjct: 400 HLDFQHSNLKQMS--------EFSVFLSLRNLIYLDISHTHTRVAFNGIFNG---LSSLE 448

Query: 242 ELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTG 301
            L++     Q   L   F    +++ LDLS+       P    SL+SL  L +  N    
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508

Query: 302 HIPNEFANLKLLEVLDLSNN 321
                F  L  L+ + L  N
Sbjct: 509 VPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 64.0 bits (156), Expect = 1e-10
 Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 12/156 (7%)

Query: 121 INPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSL 180
           ++ + L L+ L+ LD   ++ +       F  L+NL YL++S +            LSSL
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 181 QYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSL 240
           + L +  +SF  N           +  + L +L  L+L   +L+ +          L SL
Sbjct: 448 EVLKMAGNSFQENFLP--------DIFTELRNLTFLDLSQCQLEQLSPTAFN---SLSSL 496

Query: 241 VELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFN 276
             L +   QL+ +P  + F   TS+  + L  N ++
Sbjct: 497 QVLNMASNQLKSVPDGI-FDRLTSLQKIWLHTNPWD 531

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  172 bits (439), Expect = 5e-46
 Identities = 105/547 (19%), Positives = 188/547 (34%), Gaps = 62/547 (11%)

Query: 238 PSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWN 297
            +             IP  L      ++  LDLS N         L +  +L  L L+ +
Sbjct: 5   DASGVCDGRSRSFTSIPSGLT----AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60

Query: 298 FFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNG-EVHEFF 356
                  + F +L  LE LDLS+N  L       FG L  LK L+L  N      V   F
Sbjct: 61  RINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 357 DGFSGRPNNLEYLDLSSNSLEGELPK-SLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLR 415
              +    NL+ L + +     E+ +     L +L  L +   S       S+ ++  + 
Sbjct: 120 PNLT----NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175

Query: 416 KLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKK 475
            L L  +     +      LS +    L   +     Q S     +     +        
Sbjct: 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF-QFSPLPVDEVSSPMKKLAFRGSV 234

Query: 476 FVFNVSYNWVPPFR----LKSIQIENC------QVGPSFPVWLQVQTELTSVILRNVGIS 525
                    +   R    L  ++ ++C         PS    +    ++ +V +R + I 
Sbjct: 235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP 294

Query: 526 D----TIPGDWFSKLSSEITYLILSNNQIKGKLPRQM--NSPNLRSIDLSSNHFEGTLPL 579
                      +S L   +  + + N+++   +P     +  +L  +DLS N        
Sbjct: 295 QFYLFYDLSTVYSLLEK-VKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMV----- 347

Query: 580 WSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLS--GRIPSSVCNLEDLQILS 637
                 E +L+++   G          P LQ L LS N L    +    +  L++L  L 
Sbjct: 348 ------EEYLKNSACKGAW--------PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 393

Query: 638 IRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPC 697
           I  N       +C +  +M + +++S+  +   + +     ++L VL +SNNNL      
Sbjct: 394 ISRNTFHPMPDSCQWPEKMRF-LNLSSTGIR-VVKT--CIPQTLEVLDVSNNNLD-SFSL 448

Query: 698 SLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHII 757
            L     L  + +  N+L  +LP           ++++  N L          L +L  I
Sbjct: 449 FLPR---LQELYISRNKLK-TLPDAS--LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKI 502

Query: 758 DLSHNNF 764
            L  N +
Sbjct: 503 WLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  149 bits (379), Expect = 4e-38
 Identities = 105/576 (18%), Positives = 194/576 (33%), Gaps = 92/576 (15%)

Query: 133 TLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSS 192
             D     F    IP   G    ++ L+LSF+  +      L + ++LQ L L      S
Sbjct: 9   VCDGRSRSF--TSIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLIL-----KS 59

Query: 193 NSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQG 252
           +     ++    +    L SL+ L+L    L  + + W      L SL  L L     Q 
Sbjct: 60  SR----INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP---LSSLKYLNLMGNPYQT 112

Query: 253 IPLSLPFINFTSISVLDLSENSFNSAIPPWLFS-LTSLTKLYLRWNFFTGHIPNEFANLK 311
           + ++  F N T++  L +      S I    F+ LTSL +L ++      +      +++
Sbjct: 113 LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR 172

Query: 312 LLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDL 371
            +  L L  + +    L     IL  ++ L+L   NL               + ++ L  
Sbjct: 173 DIHHLTLHLS-ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDE-VSSPMKKLAF 230

Query: 372 SSNSLEG-------ELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLS--------SLRK 416
             + L         +L + +  L  +++   + N      PS    +S        ++R+
Sbjct: 231 RGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRR 290

Query: 417 LDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKF 476
           L +    +   +   +  L ++    +  +    +   S   +LK LE   L        
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV-PCSFSQHLKSLEFLDL-------- 341

Query: 477 VFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISD-TIPGDWFSK 535
               S N      +    ++N     ++P        L +++L    +      G+    
Sbjct: 342 ----SEN-----LMVEEYLKNSACKGAWP-------SLQTLVLSQNHLRSMQKTGEILLT 385

Query: 536 LSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFS 595
           L + +T L +S N              +R ++LSS              + L + +N   
Sbjct: 386 LKN-LTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLD 444

Query: 596 GPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQ 655
                +    +PRLQ LY+S N+L   +P +      L ++                   
Sbjct: 445 -----SFSLFLPRLQELYISRNKLK-TLPDAS-LFPVLLVM------------------- 478

Query: 656 MFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNL 691
                 IS N L       F  L SL  + L  N  
Sbjct: 479 -----KISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  142 bits (361), Expect = 7e-36
 Identities = 101/536 (18%), Positives = 179/536 (33%), Gaps = 39/536 (7%)

Query: 338 LKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSG 397
               D  + +    +       SG    ++ LDLS N +       L    NLQ L L  
Sbjct: 7   SGVCDGRSRSFT-SI------PSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59

Query: 398 NSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQF 457
           +        +  +L SL  LDLS N ++      FG LS L   NL+ N ++ +   S F
Sbjct: 60  SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 458 MNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSV 517
            NL  L++ R+    T   +  + +  +    L  ++I+   +       L+   ++  +
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLT--SLNELEIKALSLRNYQSQSLKSIRDIHHL 177

Query: 518 ILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTL 577
            L     +  +   +   LSS + YL L +  +  +        +  S  +    F G++
Sbjct: 178 TLHLSESA-FLLEIFADILSS-VRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSV 234

Query: 578 PLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILS 637
               +  + L L        L E              + ++              ++ L 
Sbjct: 235 LTDESFNELLKLLRYILE--LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292

Query: 638 IRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPC 697
           I    L  +    +   +    I + N+ +     S    L+SL  L LS N +      
Sbjct: 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK 352

Query: 698 S---LQNCTGLTSIDLGGNQLSGSLPLWIS--ENLSSFFMLRLRSNLLSGDIPQRLCNLQ 752
           +         L ++ L  N L  S+         L +   L +  N     +P      +
Sbjct: 353 NSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE 410

Query: 753 NLHIIDLSHNNFSGAIPRCI-GNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNS 811
            +  ++LS       +  CI   L  L   NN+                  S  +  +  
Sbjct: 411 KMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNN--LDSF------------SLFLPRLQE 455

Query: 812 IDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNL 867
           + +S N L   +PD       L ++ +S NQL          L SL K+ L  N  
Sbjct: 456 LYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  123 bits (310), Expect = 2e-29
 Identities = 86/472 (18%), Positives = 158/472 (33%), Gaps = 83/472 (17%)

Query: 127 HLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQ-LGSLSSLQYLDL 185
            L  L  L+L  N ++   +   F  L NL+ L +       EI       L+SL  L++
Sbjct: 96  PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155

Query: 186 YADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRL 245
            A S  +              L  +  +  L L   +   +        ++L S+  L L
Sbjct: 156 KALSLRNYQS---------QSLKSIRDIHHLTLHLSESAFLLEI---FADILSSVRYLEL 203

Query: 246 HYCQLQGIPLS-------LPFINFTSISVLDLSENSFN--SAIPPWLFSLTSLTKLYLRW 296
               L     S          +   +     L++ SFN    +  ++  L+ +       
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263

Query: 297 NFFTGHIPNEFANLKL--------LEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNL 348
           N      P+E   +          +  L +     L   L  ++ +L ++K + +  + +
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY-LFYDLSTVYSLLEKVKRITVENSKV 322

Query: 349 NGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKS---LGNLKNLQYLRLSGNSFW--GS 403
                 F         +LE+LDLS N +  E  K+    G   +LQ L LS N       
Sbjct: 323 FLVPCSFSQHLK----SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378

Query: 404 IPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRL 463
               +  L +L  LD+S N  +  +P+S     ++   NL       +++      L+ L
Sbjct: 379 TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVL 436

Query: 464 ESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVG 523
                          +VS N      L S  +                  L  + +    
Sbjct: 437 ---------------DVSNN-----NLDSFSLFL--------------PRLQELYISRNK 462

Query: 524 ISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQM--NSPNLRSIDLSSNHF 573
           +  T+P          +  + +S NQ+K  +P  +     +L+ I L +N +
Sbjct: 463 LK-TLPDASL---FPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 84.8 bits (210), Expect = 4e-17
 Identities = 42/247 (17%), Positives = 84/247 (34%), Gaps = 34/247 (13%)

Query: 122 NPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQ 181
               +    +  L +        ++   +  L+ ++ + +  S            L SL+
Sbjct: 279 ELGKVETVTIRRLHIPQFYL-FYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLE 337

Query: 182 YLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLV 241
           +LDL      S +  +  + +N        SL+ L L    L  +     + +  L +L 
Sbjct: 338 FLDL------SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG-EILLTLKNLT 390

Query: 242 ELRLHYCQLQGIP-------------------LSLPFINFTSISVLDLSENSFNSAIPPW 282
            L +       +P                     +      ++ VLD+S N+ +S     
Sbjct: 391 SLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDS-FSL- 448

Query: 283 LFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLD 342
              L  L +LY+  N     +P + +   +L V+ +S N  L      +F  L  L+ + 
Sbjct: 449 --FLPRLQELYISRNKLK-TLP-DASLFPVLLVMKISRNQ-LKSVPDGIFDRLTSLQKIW 503

Query: 343 LSANNLN 349
           L  N  +
Sbjct: 504 LHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 29/178 (16%), Positives = 59/178 (33%), Gaps = 31/178 (17%)

Query: 701 NCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLS 760
           +C      D      + S+P  ++  + S   L L  N ++      L    NL ++ L 
Sbjct: 3   SCDASGVCDGRSRSFT-SIPSGLTAAMKS---LDLSFNKITYIGHGDLRACANLQVLILK 58

Query: 761 HNNFSGAIPRCIGNLSALVY---GNNS------EVFQQLIWRVVKGRNPEYSNIIADVNS 811
            +  +        +L +L +    +N         F  L                + +  
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL----------------SSLKY 102

Query: 812 IDLSWNNLTG-QIPDEIGNLSALHILNLSHNQLSGAIP-QSLSSLASLSKLNLSFNNL 867
           ++L  N      +     NL+ L  L + + +    I     + L SL++L +   +L
Sbjct: 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.9 bits (109), Expect = 5e-05
 Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 34/119 (28%)

Query: 749 CNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIAD 808
            +     + D    +F+ +IP                                 S + A 
Sbjct: 2   LSCDASGVCDGRSRSFT-SIP---------------------------------SGLTAA 27

Query: 809 VNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNL 867
           + S+DLS+N +T     ++   + L +L L  ++++     +  SL SL  L+LS N+L
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  140 bits (354), Expect = 1e-36
 Identities = 58/333 (17%), Positives = 93/333 (27%), Gaps = 37/333 (11%)

Query: 144 AEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQN 203
                +         L    S+        L         D      +    +       
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE 61

Query: 204 LNWLSGLSS------------LKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQ 251
                 L +               L L  V L             L  L  + +    L 
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPLPQF----PDQAFRLSHLQHMTIDAAGLM 117

Query: 252 GIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLK 311
            +P ++    F  +  L L+ N   + +P  + SL  L +L +R       +P   A+  
Sbjct: 118 ELPDTMQ--QFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTD 174

Query: 312 L---------LEVLDLSNN-LDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSG 361
                     L+ L L    +     LP     L+ LKSL +  + L+            
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIR---SLPASIANLQNLKSLKIRNSPLSALGPAI-----H 226

Query: 362 RPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSY 421
               LE LDL   +     P   G    L+ L L   S   ++P  I  L+ L KLDL  
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286

Query: 422 NGMNGTIPESFGKLSELVDANLLQNSWEGILQE 454
                 +P    +L       +  +    + Q 
Sbjct: 287 CVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  129 bits (327), Expect = 4e-33
 Identities = 58/346 (16%), Positives = 104/346 (30%), Gaps = 50/346 (14%)

Query: 541 TYLILSNNQIKGKLPRQM-NSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLP 599
             L    +         +       + D +  H        S N                
Sbjct: 15  ENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN-SNNPQIETRTGRALKA-TA 72

Query: 600 ENIGSL-MPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFW 658
           + +     P    L L    L  + P     L  LQ ++I +  L  E P+         
Sbjct: 73  DLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLE 130

Query: 659 GIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNC---------TGLTSID 709
            + ++ N L  ++P+S  SL  L  L +        +P  L +            L S+ 
Sbjct: 131 TLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR 189

Query: 710 LGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIP 769
           L    +  SLP  I+ NL +   L++R++ LS  +   + +L  L  +DL         P
Sbjct: 190 LEWTGIR-SLPASIA-NLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYP 246

Query: 770 RCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGN 829
              G  + L                                 + L   +    +P +I  
Sbjct: 247 PIFGGRAPLK-------------------------------RLILKDCSNLLTLPLDIHR 275

Query: 830 LSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSLP 875
           L+ L  L+L        +P  ++ L +   + +  +  A      P
Sbjct: 276 LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRP 321

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  116 bits (294), Expect = 9e-29
 Identities = 56/331 (16%), Positives = 101/331 (30%), Gaps = 58/331 (17%)

Query: 532 WFSKLSSEITYLILSNNQIKG--KLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNAD---E 586
           W    S+       +   +K    L      P   +++L S       P  +        
Sbjct: 50  WRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQH 108

Query: 587 LFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGE 646
           + +        LP+ +      L+ L L+ N L   +P+S+ +L  L+ LSIR+     E
Sbjct: 109 MTIDAAGLME-LPDTMQQF-AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTE 165

Query: 647 FPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLT 706
            P             +++             L +L  L L    +   +P S+ N   L 
Sbjct: 166 LPE-----------PLASTDA----SGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLK 209

Query: 707 SIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSG 766
           S+ +  + LS +L   I  +L     L LR      + P        L  + L   +   
Sbjct: 210 SLKIRNSPLS-ALGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267

Query: 767 AIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDE 826
            +P  I  L+ L                                 +DL       ++P  
Sbjct: 268 TLPLDIHRLTQLEK-------------------------------LDLRGCVNLSRLPSL 296

Query: 827 IGNLSALHILNLSHNQLSGAIPQSLSSLASL 857
           I  L A  I+ +  +  +        +  + 
Sbjct: 297 IAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  107 bits (270), Expect = 1e-25
 Identities = 40/267 (14%), Positives = 72/267 (26%), Gaps = 35/267 (13%)

Query: 609 LQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLT 668
            + LY   +         +   +            +    N    S        +  +L 
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN----SNNPQIETRTGRALK 69

Query: 669 GSIPSSFGSLRS--LSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISEN 726
            +               L L +  L    P      + L  + +    L   LP  +   
Sbjct: 70  -ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-Q 125

Query: 727 LSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEV 786
            +    L L  N L   +P  + +L  L  + +        +P  + +  A         
Sbjct: 126 FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184

Query: 787 FQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGA 846
            Q L                       L W  +   +P  I NL  L  L + ++ LS A
Sbjct: 185 LQSL----------------------RLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-A 220

Query: 847 IPQSLSSLASLSKLNLSFNNLAGKIPS 873
           +  ++  L  L +L+L         P 
Sbjct: 221 LGPAIHHLPKLEELDLRGCTALRNYPP 247

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  102 bits (256), Expect = 9e-24
 Identities = 44/227 (19%), Positives = 78/227 (34%), Gaps = 33/227 (14%)

Query: 123 PSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQY 182
            ++     L+TL L+ N      +P     L  LR L++       E+P  L S  +   
Sbjct: 121 DTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 183 LDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVE 242
                                     GL +L+ L L +  +  + A     +  L +L  
Sbjct: 179 ------------------------HQGLVNLQSLRLEWTGIRSLPAS----IANLQNLKS 210

Query: 243 LRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGH 302
           L++    L  +  ++   +   +  LDL   +     PP       L +L L+       
Sbjct: 211 LKIRNSPLSALGPAIH--HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268

Query: 303 IPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLN 349
           +P +   L  LE LDL   ++L  +LP L   L     + +  +   
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNL-SRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  101 bits (255), Expect = 1e-23
 Identities = 66/388 (17%), Positives = 124/388 (31%), Gaps = 79/388 (20%)

Query: 378 GELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSE 437
           G       +    + L   G++        +         D +          S  + + 
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRN-------RWHSAWRQAN 54

Query: 438 LVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIEN 497
             +  +   +            LK                                 +E+
Sbjct: 55  SNNPQIETRTGR---------ALKATAD----------------------------LLED 77

Query: 498 CQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQ 557
                        Q    ++ LR+V +    P D   +LS  + ++ +    +  +LP  
Sbjct: 78  AT-----------QPGRVALELRSVPLP-QFP-DQAFRLSH-LQHMTIDAAGLM-ELPDT 122

Query: 558 MNS-PNLRSIDLSSNHFEGTLP-----LWSTNADELFLQDNRFSGPLPENIGSL------ 605
           M     L ++ L+ N     LP     L      EL ++       LPE + S       
Sbjct: 123 MQQFAGLETLTLARNPLR-ALPASIASL--NRLRELSIRACPELTELPEPLASTDASGEH 179

Query: 606 --MPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDIS 663
             +  LQ L L W  +   +P+S+ NL++L+ L IR++ LS       +H      +D+ 
Sbjct: 180 QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLR 237

Query: 664 NNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWI 723
             +   + P  FG    L  L+L + +    +P  +   T L  +DL G      LP  I
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297

Query: 724 SENLSSFFMLRLRSNLLSGDIPQRLCNL 751
           +  L +  ++ +  +L +     R    
Sbjct: 298 A-QLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.4 bits (194), Expect = 9e-16
 Identities = 28/206 (13%), Positives = 52/206 (25%), Gaps = 40/206 (19%)

Query: 669 GSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLS 728
           GS             L    +         L       + D      +         N +
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA-----NSN 56

Query: 729 SFFMLRLRSNLLSGDIPQ-RLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVF 787
           +  +       L                 ++L         P     LS L +       
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQH------- 108

Query: 788 QQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAI 847
                                   + +    L  ++PD +   + L  L L+ N L  A+
Sbjct: 109 ------------------------MTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-AL 142

Query: 848 PQSLSSLASLSKLNLSFNNLAGKIPS 873
           P S++SL  L +L++       ++P 
Sbjct: 143 PASIASLNRLRELSIRACPELTELPE 168

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 31/172 (18%), Positives = 55/172 (31%), Gaps = 20/172 (11%)

Query: 120 KINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSS 179
             +     L  L +L L         +P     L+NL+ L +  S  S  + P +  L  
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPK 230

Query: 180 LQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNL-GFVKLDHVGADWLQAVNMLP 238
           L+ LDL        +              G + LK L L     L  +  D    ++ L 
Sbjct: 231 LEELDL-----RGCTALRNYP----PIFGGRAPLKRLILKDCSNLLTLPLD----IHRLT 277

Query: 239 SLVELRLHYC-QLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSL 289
            L +L L  C  L  +P  +      +  ++ +  +           +  + 
Sbjct: 278 QLEKLDLRGCVNLSRLPSLIA--QLPANCIILVPPHLQAQLDQHRPVARPAE 327

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  142 bits (359), Expect = 3e-36
 Identities = 93/572 (16%), Positives = 180/572 (31%), Gaps = 121/572 (21%)

Query: 121 INPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSL 180
           INP  +   +L       ++    E+P     +K+      ++S +    PP  G    +
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 181 QYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSL 240
               L                           L+L NLG   L            + P L
Sbjct: 61  AVSRLRD-----------------CLDRQAHELELNNLGLSSLP----------ELPPHL 93

Query: 241 VELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFT 300
             L      L  +P      +  S+ V + +  + +   P        L  L +  N   
Sbjct: 94  ESLVASCNSLTELPELPQ--SLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE 144

Query: 301 GHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFS 360
             +P E  N   L+++D+ NN      L KL  +   L+ +    N L  E+ E      
Sbjct: 145 -KLP-ELQNSSFLKIIDVDNN-----SLKKLPDLPPSLEFIAAGNNQLE-ELPEL----- 191

Query: 361 GRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLS 420
                L  +   +NSL+ +LP    +L+++       N         + NL  L  +   
Sbjct: 192 QNLPFLTAIYADNNSLK-KLPDLPLSLESIV---AGNNIL--EELPELQNLPFLTTIYAD 245

Query: 421 YNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNV 480
            N +  T+P+    L  L   +        + Q   F+++       L+  P   +  N 
Sbjct: 246 NNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 304

Query: 481 SYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEI 540
           S N      ++S+           P        L  + + N  + +         L   +
Sbjct: 305 SSN-----EIRSL--------CDLP------PSLEELNVSNNKLIE------LPALPPRL 339

Query: 541 TYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPE 600
             LI S N +  ++P      NL+ + +  N      P    + ++L +  +     +PE
Sbjct: 340 ERLIASFNHLA-EVPELP--QNLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAE--VPE 393

Query: 601 NIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGI 660
              +    L++L++  N L    P    ++EDL                           
Sbjct: 394 LPQN----LKQLHVETNPLR-EFPDIPESVEDL--------------------------- 421

Query: 661 DISNNSLTGSIPSSFGSLRSLSVLLLSNNNLS 692
            +++  +      +  +   L   +  +++  
Sbjct: 422 RMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  140 bits (355), Expect = 1e-35
 Identities = 105/525 (20%), Positives = 186/525 (35%), Gaps = 107/525 (20%)

Query: 260 INFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLS 319
           ++ T +       ++    +P    ++ S T+ Y  W+ +  + P      + + V  L 
Sbjct: 8   VSNTFLQEPLRHSSNLTE-MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 320 NNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGE 379
           + L             R+   L+L+   L+             P +LE L  S NSL  E
Sbjct: 67  DCL------------DRQAHELELNNLGLS--------SLPELPPHLESLVASCNSLT-E 105

Query: 380 LPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELV 439
           LP+   +LK+L     +  +     P        L  L +S N +   +PE     S L 
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLPE-LQNSSFLK 156

Query: 440 DANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSI-QIENC 498
             ++  NS + +       +L+ +                   N     +L+ + +++N 
Sbjct: 157 IIDVDNNSLKKL--PDLPPSLEFI---------------AAGNN-----QLEELPELQNL 194

Query: 499 QVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQM 558
                          LT++   N  +   +P    S     +  ++  NN ++ +LP   
Sbjct: 195 -------------PFLTAIYADNNSLK-KLPDLPLS-----LESIVAGNNILE-ELPELQ 234

Query: 559 NSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQ 618
           N P L +I   +N  + TLP    + + L ++DN  +  LPE   S    L  L +S N 
Sbjct: 235 NLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTD-LPELPQS----LTFLDVSENI 288

Query: 619 LSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSL 678
            S  +     NL  L   S     L    P+          +++SNN L   +P+    L
Sbjct: 289 FS-GLSELPPNLYYLNASSNEIRSLCDLPPSLEE-------LNVSNNKLI-ELPALPPRL 339

Query: 679 RSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSN 738
             L     S N+L+  +P   QN   L  + +  N L    P           +  LR N
Sbjct: 340 ERLI---ASFNHLA-EVPELPQN---LKQLHVEYNPLR-EFPDIPES------VEDLRMN 385

Query: 739 LLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNN 783
               ++P+   NL+ L    +  N      P    ++  L   + 
Sbjct: 386 SHLAEVPELPQNLKQL---HVETNPLR-EFPDIPESVEDLRMNSE 426

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  135 bits (342), Expect = 5e-34
 Identities = 91/565 (16%), Positives = 185/565 (32%), Gaps = 118/565 (20%)

Query: 304 PNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRP 363
           P   +N  L E L  S+NL    ++P     ++       + +                P
Sbjct: 5   PRNVSNTFLQEPLRHSSNLT---EMPVEAENVKSKTEYYNAWSEWERNAP---------P 52

Query: 364 NNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNG 423
            N E  +++ + L   L +          L L+      S+P    +L     L  S N 
Sbjct: 53  GNGEQREMAVSRLRDCLDR------QAHELELNNLGL-SSLPELPPHL---ESLVASCNS 102

Query: 424 MNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYN 483
           +   +PE    L  L+  N    +   +        L+ L                VS N
Sbjct: 103 LT-ELPELPQSLKSLLVDNNNLKALSDLPP-----LLEYL---------------GVSNN 141

Query: 484 WVPPFRLKSI-QIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITY 542
                +L+ + +++N              + L  + + N  +           L   + +
Sbjct: 142 -----QLEKLPELQNS-------------SFLKIIDVDNNSLKK------LPDLPPSLEF 177

Query: 543 LILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENI 602
           +   NNQ++ +LP   N P L +I   +N  +  LP    + + +   +N         +
Sbjct: 178 IAAGNNQLE-ELPELQNLPFLTAIYADNNSLK-KLPDLPLSLESIVAGNNILE--ELPEL 233

Query: 603 GSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDI 662
            +L P L  +Y   N L   +P    +LE L +       L     +  +       +D+
Sbjct: 234 QNL-PFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQSLTF-------LDV 284

Query: 663 SNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLW 722
           S N  +  +     +L  L+    S+N +   +     +   L  +++  N+L   LP  
Sbjct: 285 SENIFS-GLSELPPNLYYLN---ASSNEIRS-LCDLPPS---LEELNVSNNKLI-ELPAL 335

Query: 723 ISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGN 782
               L     L    N L+ ++P+   NL+ L    + +N      P    ++  L   +
Sbjct: 336 PP-RLER---LIASFNHLA-EVPELPQNLKQL---HVEYNPLR-EFPDIPESVEDLRMNS 386

Query: 783 NSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQ 842
           +     +L   + +               + +  N L  + PD   ++  L    ++  +
Sbjct: 387 HLAEVPELPQNLKQ---------------LHVETNPLR-EFPDIPESVEDLR---MNSER 427

Query: 843 LSGAIPQSLSSLASLSKLNLSFNNL 867
           +      +  +   L       ++ 
Sbjct: 428 VVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  106 bits (266), Expect = 2e-24
 Identities = 73/356 (20%), Positives = 122/356 (34%), Gaps = 71/356 (19%)

Query: 120 KINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSS 179
           ++      LK L   + +L                 L YL +S +    ++P  L + S 
Sbjct: 105 ELPELPQSLKSLLVDNNNLKALS--------DLPPLLEYLGVSNNQLE-KLPE-LQNSSF 154

Query: 180 LQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPS 239
           L+ +D+  +S                      SL+ +  G  +L+      L  +  LP 
Sbjct: 155 LKIIDVDNNSLKK-------------LPDLPPSLEFIAAGNNQLEE-----LPELQNLPF 196

Query: 240 LVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFF 299
           L  +      L+ +P         S+  +    N       P L +L  LT +Y   N  
Sbjct: 197 LTAIYADNNSLKKLPDLP-----LSLESIVAGNNILEE--LPELQNLPFLTTIYADNNLL 249

Query: 300 TGHIPNEFANLKLLEVLDLSNN-----------LDLGG-QLPKLFGILRRLKSLDLSANN 347
              +P+   +L+ L V D               LD+       L  +   L  L+ S+N 
Sbjct: 250 K-TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNE 308

Query: 348 LNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSS 407
           +              P +LE L++S+N L  ELP        L+ L  S N     +P  
Sbjct: 309 IR--------SLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPEL 355

Query: 408 IGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRL 463
             N   L++L + YN +    P+    + +L   + L    E         NLK+L
Sbjct: 356 PQN---LKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELP------QNLKQL 401

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  103 bits (259), Expect = 2e-23
 Identities = 81/472 (17%), Positives = 164/472 (34%), Gaps = 98/472 (20%)

Query: 404 IPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRL 463
           I     + + L++     + +   +P     +    +     + WE           +  
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQRE-- 59

Query: 464 ESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVG 523
                                     +   ++ +C           +  +   + L N+G
Sbjct: 60  --------------------------MAVSRLRDC-----------LDRQAHELELNNLG 82

Query: 524 ISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTN 583
           +S         +L   +  L+ S N +  +LP      +L+S+ + +N+ +  L      
Sbjct: 83  LSS------LPELPPHLESLVASCNSLT-ELPELP--QSLKSLLVDNNNLK-ALSDLPPL 132

Query: 584 ADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKL 643
            + L + +N+    LPE + +    L+ + +  N L  ++P    +L   + ++  +N+L
Sbjct: 133 LEYLGVSNNQLEK-LPE-LQNS-SFLKIIDVDNNSLK-KLPDLPPSL---EFIAAGNNQL 185

Query: 644 SGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCT 703
             E P       +   I   NNSL   +P    SL S+      NN L       LQN  
Sbjct: 186 E-ELPELQNLPFLTA-IYADNNSLK-KLPDLPLSLESIV---AGNNILE--ELPELQNLP 237

Query: 704 GLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNN 763
            LT+I    N L  +LP     +L +  +          D+P+   +L  L + +   + 
Sbjct: 238 FLTTIYADNNLLK-TLPDLPP-SLEALNVRDNYLT----DLPELPQSLTFLDVSENIFSG 291

Query: 764 FSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQI 823
               +     NL  L   +N                    ++   +  +++S N L  ++
Sbjct: 292 ----LSELPPNLYYLNASSN--------------EIRSLCDLPPSLEELNVSNNKLI-EL 332

Query: 824 PDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSLP 875
           P     L     L  S N L+  +P+      +L +L++ +N L  + P +P
Sbjct: 333 PALPPRL---ERLIASFNHLA-EVPELPQ---NLKQLHVEYNPLR-EFPDIP 376

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 98.1 bits (245), Expect = 1e-21
 Identities = 67/355 (18%), Positives = 123/355 (34%), Gaps = 73/355 (20%)

Query: 543 LILSNNQIKGKLPRQM-NSPNLRSIDLSSNHFEGTLP----------------LWSTNAD 585
            +  ++ +  ++P +  N  +      + + +E   P                     A 
Sbjct: 16  PLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAH 74

Query: 586 ELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSG 645
           EL L +   S  LPE    L    + L  S N L+  +P    +L+ L + +     LS 
Sbjct: 75  ELELNNLGLS-SLPELPPHL----ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSD 128

Query: 646 EFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGL 705
             P   Y       + +SNN L   +P    +   L ++ + NN+L   +P    +   L
Sbjct: 129 LPPLLEY-------LGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LPDLPPS---L 175

Query: 706 TSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFS 765
             I  G NQL   LP    +NL     +   +N L   +P    +L+++      +N   
Sbjct: 176 EFIAAGNNQLE-ELPEL--QNLPFLTAIYADNNSLK-KLPDLPLSLESI---VAGNNILE 228

Query: 766 GAIPRCIGNLSAL----VYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTG 821
                 + NL  L       N  +                  ++   + ++++  N LT 
Sbjct: 229 --ELPELQNLPFLTTIYADNNLLKTL---------------PDLPPSLEALNVRDNYLT- 270

Query: 822 QIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSLPN 876
            +P+   +L+ L +     + LS           +L  LN S N +       P+
Sbjct: 271 DLPELPQSLTFLDVSENIFSGLS-------ELPPNLYYLNASSNEIRSLCDLPPS 318

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 74.3 bits (183), Expect = 5e-14
 Identities = 44/213 (20%), Positives = 81/213 (38%), Gaps = 39/213 (18%)

Query: 677 SLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFF----- 731
           S   L   L  ++NL+  +P   +N    T      ++   + P    E           
Sbjct: 9   SNTFLQEPLRHSSNLTE-MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 732 -------MLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNS 784
                   L L +  LS  +P+   +L++L     S N+ +  +P    +L +L+  NN+
Sbjct: 68  CLDRQAHELELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQSLKSLLVDNNN 122

Query: 785 EVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLS 844
                             S++   +  + +S N L  ++P E+ N S L I+++ +N L 
Sbjct: 123 LK--------------ALSDLPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK 166

Query: 845 GAIPQSLSSLASLSKLNLSFNNLAGKIPSLPNF 877
             +P       SL  +    N L  ++P L N 
Sbjct: 167 -KLPDLPP---SLEFIAAGNNQLE-ELPELQNL 194

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  140 bits (356), Expect = 9e-36
 Identities = 104/529 (19%), Positives = 181/529 (34%), Gaps = 81/529 (15%)

Query: 327 QLPKLFGI--LRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSL 384
            + ++F    L       L   N+   V +         + +  L      ++      +
Sbjct: 13  PINQIFTDTALAEKMKTVLGKTNVTDTVSQ------TDLDQVTTLQADRLGIKS--IDGV 64

Query: 385 GNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLL 444
             L NL  +  S N      P  + NL+ L  + ++ N +    P     L+ L    L 
Sbjct: 65  EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF 120

Query: 445 QNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQ-IENCQVGPS 503
            N    I       NL  L    L            S N      +  I  +        
Sbjct: 121 NNQITDI---DPLKNLTNLNRLEL------------SSN-----TISDISALSGL----- 155

Query: 504 FPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNL 563
                   T L  +   N  ++D  P    + L++ +  L +S+N++   +       NL
Sbjct: 156 --------TSLQQLSFGN-QVTDLKP---LANLTT-LERLDISSNKVSD-ISVLAKLTNL 201

Query: 564 RSIDLSSNHFEGTLPLWS-TNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGR 622
            S+  ++N      PL   TN DEL L  N+        + SL   L  L L+ NQ+S  
Sbjct: 202 ESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASL-TNLTDLDLANNQISNL 258

Query: 623 IPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLS 682
            P  +  L  L  L + +N++S         + +   ++++ N L    P    +L++L+
Sbjct: 259 AP--LSGLTKLTELKLGANQISN-ISPLAGLTALTN-LELNENQLEDISP--ISNLKNLT 312

Query: 683 VLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSG 742
            L L  NN+S   P  + + T L  +    N++S    L    NL++   L    N +S 
Sbjct: 313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSL---ANLTNINWLSAGHNQISD 367

Query: 743 DIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEY 802
             P  L NL  +  + L+   ++ A      N+S      N          +  G +   
Sbjct: 368 LTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGS--- 422

Query: 803 SNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSL 851
                     D++WN  +    +     S    +       SG + Q L
Sbjct: 423 ------YTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  137 bits (348), Expect = 1e-34
 Identities = 99/527 (18%), Positives = 173/527 (32%), Gaps = 88/527 (16%)

Query: 123 PSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQY 182
            +   L       L   +            L  +  L              +  L++L  
Sbjct: 18  FTDTALAEKMKTVLGKTNVTD---TVSQTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQ 72

Query: 183 LDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVE 242
           ++   +  +  +            L  L+ L  + +   ++       +  +  L +L  
Sbjct: 73  INFSNNQLTDITP-----------LKNLTKLVDILMNNNQIAD-----ITPLANLTNLTG 116

Query: 243 LRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGH 302
           L L   Q+  I    P  N T+++ L+LS N+ +      L  LTSL +L    N  T  
Sbjct: 117 LTLFNNQITDID---PLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDL 170

Query: 303 IPNEFANLKLLEVLDLSNNLDLGGQLPKLFGI--LRRLKSLDLSANNLNGEVHEFFDGFS 360
            P   ANL  LE LD+S+N     ++  +  +  L  L+SL  + N ++           
Sbjct: 171 KP--LANLTTLERLDISSN-----KVSDISVLAKLTNLESLIATNNQISD-----ITPLG 218

Query: 361 GRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLS 420
               NL+ L L+ N L+     +L +L NL  L L+ N      P  +  L+ L +L L 
Sbjct: 219 I-LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 273

Query: 421 YNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNV 480
            N ++   P     L+ L +  L +N  E I   S   NL  L                +
Sbjct: 274 ANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYL---------------TL 316

Query: 481 SYNWVPPFRLKSIQ-IENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSE 539
            +N      +  I  + +              T+L  +   N  +SD       + L++ 
Sbjct: 317 YFN-----NISDISPVSSL-------------TKLQRLFFYNNKVSDVSS---LANLTN- 354

Query: 540 ITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLP 599
           I +L   +NQI   L    N   +  + L+   +      +  N        N     + 
Sbjct: 355 INWLSAGHNQISD-LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIA 413

Query: 600 ENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGE 646
               S         ++WN  S               +   +   SG 
Sbjct: 414 PATISDGGSYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFSGT 459

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  130 bits (330), Expect = 2e-32
 Identities = 93/487 (19%), Positives = 166/487 (34%), Gaps = 96/487 (19%)

Query: 383 SLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDAN 442
           +   L       L   +   +   S  +L  +  L            +    L+ L   N
Sbjct: 19  TDTALAEKMKTVLGKTNV--TDTVSQTDLDQVTTLQADRL--GIKSIDGVEYLNNLTQIN 74

Query: 443 LLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQ-IENCQVG 501
              N    I   +   NL +L    +            + N     ++  I  + N    
Sbjct: 75  FSNNQLTDI---TPLKNLTKLVDILM------------NNN-----QIADITPLANL--- 111

Query: 502 PSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSP 561
                     T LT + L N  I+D  P      L++ +  L LS+N I   +       
Sbjct: 112 ----------TNLTGLTLFNNQITDIDP---LKNLTN-LNRLELSSNTISD-ISALSGLT 156

Query: 562 NLRSIDLSSNHFEGTLPLWS-TNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLS 620
           +L+ +    N      PL + T  + L +  N+ S      +  L   L+ L  + NQ+S
Sbjct: 157 SLQQLSFG-NQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKL-TNLESLIATNNQIS 212

Query: 621 GRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRS 680
              P  +  L +L  LS+  N+L  +       + +   +D++NN ++   P     L  
Sbjct: 213 DITP--LGILTNLDELSLNGNQLK-DIGTLASLTNLTD-LDLANNQISNLAP--LSGLTK 266

Query: 681 LSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLL 740
           L+ L L  N +S   P  L   T LT+++L  NQL    P+    NL +   L L  N +
Sbjct: 267 LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI---SNLKNLTYLTLYFNNI 321

Query: 741 SGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNP 800
           S   P  + +L  L  +   +N  S      + NL+ +                      
Sbjct: 322 SDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNI---------------------- 355

Query: 801 EYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKL 860
                    N +    N ++   P  + NL+ +  L L+    + A     ++++  + +
Sbjct: 356 ---------NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 404

Query: 861 NLSFNNL 867
                 L
Sbjct: 405 KNVTGAL 411

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  136 bits (344), Expect = 4e-35
 Identities = 75/364 (20%), Positives = 130/364 (35%), Gaps = 59/364 (16%)

Query: 124 SLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYL 183
               L       L               +L+++  L ++    +  I   +  L++L+YL
Sbjct: 17  PDADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEKVA-SIQG-IEYLTNLEYL 71

Query: 184 DLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVEL 243
           +L  +  +            ++ LS L  L  L +G  K+       + A+  L +L EL
Sbjct: 72  NLNGNQITD-----------ISPLSNLVKLTNLYIGTNKITD-----ISALQNLTNLREL 115

Query: 244 RLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHI 303
            L+   +  I    P  N T +  L+L  N   S + P L ++T L  L +  +      
Sbjct: 116 YLNEDNISDIS---PLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD-- 169

Query: 304 PNEFANLKLLEVLDLSNN----------------LDLGG-QLPKL--FGILRRLKSLDLS 344
               ANL  L  L L+ N                      Q+  +     + RL SL + 
Sbjct: 170 VTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIG 229

Query: 345 ANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSI 404
            N +           +     L +L++ +N +      ++ +L  L+ L +  N    S 
Sbjct: 230 NNKITD-----LSPLANLS-QLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQI--SD 279

Query: 405 PSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLE 464
            S + NLS L  L L+ N +     E  G L+ L    L QN    I       +L +++
Sbjct: 280 ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI---RPLASLSKMD 336

Query: 465 SFRL 468
           S   
Sbjct: 337 SADF 340

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  130 bits (330), Expect = 3e-33
 Identities = 75/326 (23%), Positives = 123/326 (37%), Gaps = 44/326 (13%)

Query: 123 PSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQY 182
             + +L  L+ L+L+ N             L  L  L +  +  +      L +L++L+ 
Sbjct: 60  QGIEYLTNLEYLNLNGNQITD---ISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRE 114

Query: 183 LDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVE 242
           L L  D+ S  S            L+ L+ +  LNLG           L  ++ +  L  
Sbjct: 115 LYLNEDNISDISP-----------LANLTKMYSLNLGANHNLSD----LSPLSNMTGLNY 159

Query: 243 LRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGH 302
           L +   +++ +    P  N T +  L L+ N      P  L SLTSL       N  T  
Sbjct: 160 LTVTESKVKDVT---PIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDI 214

Query: 303 IPNEFANLKLLEVLDLSNNLDLGGQLPKLFGI--LRRLKSLDLSANNLNGEVHEFFDGFS 360
            P   AN+  L  L + NN     ++  L  +  L +L  L++  N ++       +   
Sbjct: 215 TP--VANMTRLNSLKIGNN-----KITDLSPLANLSQLTWLEIGTNQISD-----INAVK 262

Query: 361 GRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLS 420
                L+ L++ SN +       L NL  L  L L+ N         IG L++L  L LS
Sbjct: 263 DLTK-LKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319

Query: 421 YNGMNGTIPESFGKLSELVDANLLQN 446
            N +    P     LS++  A+    
Sbjct: 320 QNHITDIRP--LASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  128 bits (323), Expect = 3e-32
 Identities = 75/386 (19%), Positives = 153/386 (39%), Gaps = 50/386 (12%)

Query: 490 LKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQ 549
             ++      +   FP       E    +L+   ++D +      +L S IT L+++  +
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT---QEELES-ITKLVVAGEK 55

Query: 550 IKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWS-TNADELFLQDNRFSGPLPENIGSLMPR 608
           +   +       NL  ++L+ N      PL +      L++  N+ +      + +L   
Sbjct: 56  VA-SIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI--SALQNL-TN 111

Query: 609 LQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLT 668
           L+ LYL+ + +S    S + NL  +  L++ +N    +       + + + + ++ + + 
Sbjct: 112 LRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNY-LTVTESKVK 168

Query: 669 GSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLS 728
              P    +L  L  L L+ N +    P  L + T L       NQ++   P+    N++
Sbjct: 169 DVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPV---ANMT 221

Query: 729 SFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVY---GNNS- 784
               L++ +N ++   P  L NL  L  +++  N  S      + +L+ L     G+N  
Sbjct: 222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQI 277

Query: 785 ---EVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHN 841
               V   L                  +NS+ L+ N L  +  + IG L+ L  L LS N
Sbjct: 278 SDISVLNNLS----------------QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321

Query: 842 QLSGAIPQSLSSLASLSKLNLSFNNL 867
            ++   P  L+SL+ +   + +   +
Sbjct: 322 HITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  118 bits (299), Expect = 4e-29
 Identities = 73/406 (17%), Positives = 147/406 (36%), Gaps = 63/406 (15%)

Query: 338 LKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSG 397
             +L      +N          +          L   S+      +   L+++  L ++G
Sbjct: 2   AATLATLPAPINQI--FPDADLA----EGIRAVLQKASVTD--VVTQEELESITKLVVAG 53

Query: 398 NSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQF 457
                +    I  L++L  L+L+ N +    P     L +L +  +  N    I   S  
Sbjct: 54  EKV--ASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI---SAL 106

Query: 458 MNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQ-IENCQVGPSFPVWLQVQTELTS 516
            NL  L    L            + +      +  I  + N              T++ S
Sbjct: 107 QNLTNLRELYL------------NED-----NISDISPLANL-------------TKMYS 136

Query: 517 VILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGT 576
           + L        +     S ++  + YL ++ +++K  +    N  +L S+ L+ N  E  
Sbjct: 137 LNLGANHNLSDLSP--LSNMTG-LNYLTVTESKVK-DVTPIANLTDLYSLSLNYNQIEDI 192

Query: 577 LPLWS-TNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQI 635
            PL S T+        N+ +      + ++  RL  L +  N+++    S + NL  L  
Sbjct: 193 SPLASLTSLHYFTAYVNQITD--ITPVANM-TRLNSLKIGNNKITD--LSPLANLSQLTW 247

Query: 636 LSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGI 695
           L I +N++S         +++   +++ +N ++    S   +L  L+ L L+NN L    
Sbjct: 248 LEIGTNQISD-INAVKDLTKL-KMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNED 303

Query: 696 PCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLS 741
              +   T LT++ L  N ++   PL    +LS        + ++ 
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDIRPL---ASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  117 bits (295), Expect = 1e-28
 Identities = 80/399 (20%), Positives = 139/399 (34%), Gaps = 59/399 (14%)

Query: 369 LDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTI 428
           L      +    P    +L       L   S   +   +   L S+ KL ++   +    
Sbjct: 5   LATLPAPINQIFP--DADLAEGIRAVLQKASV--TDVVTQEELESITKLVVAGEKV--AS 58

Query: 429 PESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPF 488
            +    L+ L   NL  N    I   S   NL +L +  +              N     
Sbjct: 59  IQGIEYLTNLEYLNLNGNQITDI---SPLSNLVKLTNLYI------------GTN----- 98

Query: 489 RLKSIQ-IENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSN 547
           ++  I  ++N              T L  + L    ISD  P    + L+  +  L L  
Sbjct: 99  KITDISALQNL-------------TNLRELYLNEDNISDISP---LANLTK-MYSLNLGA 141

Query: 548 NQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWS-TNADELFLQDNRFSGPLPENIGSLM 606
           N     L    N   L  + ++ +  +   P+ + T+   L L  N+        + SL 
Sbjct: 142 NHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIED--ISPLASL- 198

Query: 607 PRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNS 666
             L       NQ++    + V N+  L  L I +NK++         SQ+ W ++I  N 
Sbjct: 199 TSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITD-LSPLANLSQLTW-LEIGTNQ 254

Query: 667 LTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISEN 726
           ++    ++   L  L +L + +N +S      L N + L S+ L  NQL       I   
Sbjct: 255 ISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIG-G 309

Query: 727 LSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFS 765
           L++   L L  N ++   P  L +L  +   D ++    
Sbjct: 310 LTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  116 bits (292), Expect = 3e-28
 Identities = 86/433 (19%), Positives = 160/433 (36%), Gaps = 90/433 (20%)

Query: 414 LRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPT 473
              L      +N   P++   L+E + A L + S   ++ + +  ++ +L          
Sbjct: 2   AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDVVTQEELESITKL---------- 49

Query: 474 KKFVFNVSYNWVPPFRLKSIQ-IENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDW 532
                 V+       ++ SIQ IE               T L  + L    I+D  P   
Sbjct: 50  -----VVAGE-----KVASIQGIEYL-------------TNLEYLNLNGNQITDISPLSN 86

Query: 533 FSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWS-TNADELFLQD 591
             KL    T L +  N+I   +    N  NLR + L+ ++     PL + T    L L  
Sbjct: 87  LVKL----TNLYIGTNKIT-DISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGA 141

Query: 592 NRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCW 651
           N         + ++   L  L ++ +++     + + NL DL  LS+  N++        
Sbjct: 142 NHNLS-DLSPLSNM-TGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIED-ISPLA 196

Query: 652 YHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLG 711
             + +        N +T   P    ++  L+ L + NN ++   P  L N + LT +++G
Sbjct: 197 SLTSL-HYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIG 251

Query: 712 GNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRC 771
            NQ+S    +   ++L+   ML + SN +S      L NL  L+ + L++N         
Sbjct: 252 TNQISDINAV---KDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEV 306

Query: 772 IGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLS 831
           IG L+ L                                 + LS N++T   P  + +LS
Sbjct: 307 IGGLTNLTT-------------------------------LFLSQNHITDIRP--LASLS 333

Query: 832 ALHILNLSHNQLS 844
            +   + ++  + 
Sbjct: 334 KMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 96.8 bits (242), Expect = 9e-22
 Identities = 49/255 (19%), Positives = 95/255 (37%), Gaps = 34/255 (13%)

Query: 123 PSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQY 182
             L +L  + +L+L  N             +  L YL ++ S      P  + +L+ L  
Sbjct: 126 SPLANLTKMYSLNLGAN--HNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS 181

Query: 183 LDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVE 242
           L L  +     S            L+ L+SL        ++       +  V  +  L  
Sbjct: 182 LSLNYNQIEDISP-----------LASLTSLHYFTAYVNQITD-----ITPVANMTRLNS 225

Query: 243 LRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGH 302
           L++   ++  +    P  N + ++ L++  N  +  I   +  LT L  L +  N  +  
Sbjct: 226 LKIGNNKITDLS---PLANLSQLTWLEIGTNQISD-INA-VKDLTKLKMLNVGSNQISD- 279

Query: 303 IPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGR 362
             +   NL  L  L L+NN  LG +  ++ G L  L +L LS N++           +  
Sbjct: 280 -ISVLNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNHITD-----IRPLASL 332

Query: 363 PNNLEYLDLSSNSLE 377
              ++  D ++  ++
Sbjct: 333 SK-MDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.7 bits (156), Expect = 7e-11
 Identities = 28/180 (15%), Positives = 62/180 (34%), Gaps = 34/180 (18%)

Query: 704 GLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNN 763
           G  ++      ++   P     +L+      L+   ++  +      L+++  + ++   
Sbjct: 1   GAATLATLPAPINQIFPD---ADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEK 55

Query: 764 FSGAIPRCIGNLSALVY---GNNS----EVFQQLIWRVVKGRNPEYSNIIADVNSIDLSW 816
            +      I  L+ L Y     N          L+                 + ++ +  
Sbjct: 56  VASIQG--IEYLTNLEYLNLNGNQITDISPLSNLV----------------KLTNLYIGT 97

Query: 817 NNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSLPN 876
           N +T      + NL+ L  L L+ + +S   P  L++L  +  LNL  N+    +  L N
Sbjct: 98  NKIT--DISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSN 153

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  133 bits (336), Expect = 2e-34
 Identities = 64/330 (19%), Positives = 111/330 (33%), Gaps = 34/330 (10%)

Query: 146 IPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLN 205
           I E        +   ++ SS    +     S  +++ LDL     S N     L   +  
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDL-----SGNP----LSQISAA 52

Query: 206 WLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSI 265
            L+  + L+LLNL    L          +  L +L  L L+   +Q +          SI
Sbjct: 53  DLAPFTKLELLNLSSNVLYE-----TLDLESLSTLRTLDLNNNYVQELL------VGPSI 101

Query: 266 SVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLG 325
             L  + N+ +  +            +YL  N  T     +      ++ LDL  N    
Sbjct: 102 ETLHAANNNISR-VSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158

Query: 326 GQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLG 385
               +L      L+ L+L  N +     +           L+ LDLSSN L   +     
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVV------FAKLKTLDLSSNKLA-FMGPEFQ 211

Query: 386 NLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMN-GTIPESFGKLSEL--VDAN 442
           +   + ++ L  N     I  ++    +L   DL  NG + GT+ + F K   +  V   
Sbjct: 212 SAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

Query: 443 LLQNSWEGILQESQFMNLKRLESFRLTTEP 472
            ++       +E     L    ++     P
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  109 bits (274), Expect = 4e-26
 Identities = 43/275 (15%), Positives = 95/275 (34%), Gaps = 32/275 (11%)

Query: 598 LPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMF 657
           + E   +   R +   ++ + L   + S   +  +++ L +  N LS             
Sbjct: 2   IHEIKQNG-NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 658 WGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSG 717
             +++S+N L         SL +L  L L+NN +       L     + ++    N +S 
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112

Query: 718 SLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSG-AIPRCIGNLS 776
            +     +   +   + L +N ++            +  +DL  N            +  
Sbjct: 113 RVSCSRGQGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 777 ALVY----GNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSA 832
            L +     N     +  +             + A + ++DLS N L   +  E  + + 
Sbjct: 170 TLEHLNLQYNFIYDVKGQV-------------VFAKLKTLDLSSNKLA-FMGPEFQSAAG 215

Query: 833 LHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNL 867
           +  ++L +N+L   I ++L    +L   +L  N  
Sbjct: 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  103 bits (259), Expect = 3e-24
 Identities = 67/396 (16%), Positives = 116/396 (29%), Gaps = 117/396 (29%)

Query: 364 NNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNG 423
           N  +   ++ +SL+  L     +  N++ L LSGN       + +   + L  L+LS N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN- 68

Query: 424 MNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYN 483
                      L E                     +L  L +  L            + N
Sbjct: 69  ----------VLYET----------------LDLESLSTLRTLDL------------NNN 90

Query: 484 WVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYL 543
                      ++           L V   + ++   N  IS  +              +
Sbjct: 91  ----------YVQE----------LLVGPSIETLHAANNNIS-RVSCSRGQGK----KNI 125

Query: 544 ILSNNQIKGKLPRQM--NSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPEN 601
            L+NN+I   L          ++ +DL  N  +                    +    E 
Sbjct: 126 YLANNKIT-MLRDLDEGCRSRVQYLDLKLNEID--------------------TVNFAEL 164

Query: 602 IGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGID 661
             S    L+ L L +N +   +   V     L+ L + SNKL+                 
Sbjct: 165 AASS-DTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA----------------- 204

Query: 662 ISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLS-GSLP 720
                    +   F S   ++ + L NN L   I  +L+    L   DL GN    G+L 
Sbjct: 205 --------FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR 255

Query: 721 LWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHI 756
            + S+N     + +     L+G   +        H 
Sbjct: 256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  101 bits (254), Expect = 1e-23
 Identities = 50/341 (14%), Positives = 104/341 (30%), Gaps = 55/341 (16%)

Query: 559 NSPNLRSIDLSSNHFEGTLPLWS----TNADELFLQDNRFSGPLPENIGSLMPRLQRLYL 614
           N    +   ++ +  +            N  EL L  N  S     ++     +L+ L L
Sbjct: 8   NGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPF-TKLELLNL 65

Query: 615 SWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSS 674
           S N L       + +L  L+ L + +N +  E             +  +NN+++  +  S
Sbjct: 66  SSNVLYE--TLDLESLSTLRTLDLNNNYVQ-ELLVG----PSIETLHAANNNIS-RVSCS 117

Query: 675 FGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLR 734
               +    + L+NN ++          + +  +DL  N++       ++ +  +   L 
Sbjct: 118 --RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 735 LRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRV 794
           L+ N +  D+         L  +DLS N  +  +     + + + +              
Sbjct: 176 LQYNFIY-DVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTW-------------- 218

Query: 795 VKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLS-GAIPQSLSS 853
                            I L  N L   I   +     L   +L  N    G +    S 
Sbjct: 219 -----------------ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 854 LASLSKLNL-SFNNLAGKIPSLPNFNDPSIYEGNPLLCGAP 893
              +  +   +   L G+         P++       C   
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTV--PTLGHYGAYCCEDL 299

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  100 bits (252), Expect = 2e-23
 Identities = 59/362 (16%), Positives = 113/362 (31%), Gaps = 56/362 (15%)

Query: 259 FINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDL 318
             N     +  ++++S   A+     S  ++ +L L  N  +     + A    LE+L+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 319 SNNLDLGGQLPKL--FGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSL 376
           S+N      L +      L  L++LDL+ N +     E   G      ++E L  ++N++
Sbjct: 66  SSN-----VLYETLDLESLSTLRTLDLNNNYVQ----ELLVG-----PSIETLHAANNNI 111

Query: 377 EGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNG-TIPESFGKL 435
              +       +  + + L+ N          G  S ++ LDL  N ++     E     
Sbjct: 112 S-RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 436 SELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQI 495
             L   NL  N    +  +  F  LK L               ++S N     +L  +  
Sbjct: 169 DTLEHLNLQYNFIYDVKGQVVFAKLKTL---------------DLSSN-----KLAFMGP 208

Query: 496 ENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLP 555
           E                 +T + LRN  +   I         + + +  L  N       
Sbjct: 209 EFQSA-----------AGVTWISLRNNKLV-LIEKA-LRFSQN-LEHFDLRGNGFHCGTL 254

Query: 556 RQ--MNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLY 613
           R     +  ++++   +                L          LP      +  L   +
Sbjct: 255 RDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHH 314

Query: 614 LS 615
             
Sbjct: 315 HH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 87.0 bits (216), Expect = 1e-18
 Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 25/225 (11%)

Query: 123 PSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQY 182
             L  L  L TLDL+ N  +  E+        ++  L+ + ++ S  +          + 
Sbjct: 74  LDLESLSTLRTLDLNNNYVQ--ELL----VGPSIETLHAANNNIS-RVSC--SRGQGKKN 124

Query: 183 LDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVE 242
           + L     ++N     +           S ++ L+L   ++D V    L       +L  
Sbjct: 125 IYL-----ANNK----ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL--AASSDTLEH 173

Query: 243 LRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGH 302
           L L Y  +  +      + F  +  LDLS N   + + P   S   +T + LR N     
Sbjct: 174 LNLQYNFIYDVK---GQVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-L 228

Query: 303 IPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANN 347
           I       + LE  DL  N    G L   F   +R++++      
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 82.3 bits (204), Expect = 4e-17
 Identities = 39/205 (19%), Positives = 76/205 (37%), Gaps = 31/205 (15%)

Query: 670 SIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSS 729
           +I     +     +  +++++L   +    Q+   +  +DL GN LS  +        + 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTK 59

Query: 730 FFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNN------ 783
             +L L SN+L  +    L +L  L  +DL++N     +     ++  L   NN      
Sbjct: 60  LELLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQ-ELLVGP-SIETLHAANNNISRVS 115

Query: 784 SEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQL 843
               Q                      +I L+ N +T     + G  S +  L+L  N++
Sbjct: 116 CSRGQGK-------------------KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156

Query: 844 SG-AIPQSLSSLASLSKLNLSFNNL 867
                 +  +S  +L  LNL +N +
Sbjct: 157 DTVNFAELAASSDTLEHLNLQYNFI 181

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 54.6 bits (132), Expect = 6e-08
 Identities = 25/198 (12%), Positives = 58/198 (29%), Gaps = 23/198 (11%)

Query: 124 SLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYL 183
                  +  LDL LN+ +     E       L +LNL ++    ++  Q+   + L+ L
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTL 196

Query: 184 DLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVEL 243
           DL ++  +                   + +  ++L   KL  +      A+    +L   
Sbjct: 197 DLSSNKLAFMGPE----------FQSAAGVTWISLRNNKLVLIEK----ALRFSQNLEHF 242

Query: 244 RLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHI 303
            L         L   F     +  +        +       ++ +L         +    
Sbjct: 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY----GAYCC-- 296

Query: 304 PNEFANLKLLEVLDLSNN 321
             +        ++ L ++
Sbjct: 297 -EDLPAPFADRLIALGHH 313

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  131 bits (331), Expect = 2e-32
 Identities = 73/408 (17%), Positives = 129/408 (31%), Gaps = 40/408 (9%)

Query: 146 IPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLN 205
           I E        +   ++ SS    +     S  +++ LDL     S N     L   +  
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDL-----SGNP----LSQISAA 52

Query: 206 WLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSI 265
            L+  + L+LLNL    L          +  L +L  L L+   +Q +          SI
Sbjct: 53  DLAPFTKLELLNLSSNVLYE-----TLDLESLSTLRTLDLNNNYVQELL------VGPSI 101

Query: 266 SVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLG 325
             L  + N+ +  +            +YL  N  T     +      ++ LDL  N    
Sbjct: 102 ETLHAANNNISR-VSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158

Query: 326 GQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLG 385
               +L      L+ L+L  N +     +           L+ LDLSSN L   +     
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVV------FAKLKTLDLSSNKLA-FMGPEFQ 211

Query: 386 NLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMN-GTIPESFGKLSEL--VDAN 442
           +   + ++ L  N     I  ++    +L   DL  NG + GT+ + F K   +  V   
Sbjct: 212 SAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

Query: 443 LLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGP 502
            ++       +E     L    ++     P   F   +         L S Q    +   
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDLP-APFADRLIALKRKEHALLSGQGSETE--- 326

Query: 503 SFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQI 550
                 + Q     +         T+      +  ++IT L      +
Sbjct: 327 RLECERENQARQREIDALKEQYR-TVIDQVTLRKQAKIT-LEQKKKAL 372

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  124 bits (314), Expect = 2e-30
 Identities = 75/519 (14%), Positives = 135/519 (26%), Gaps = 123/519 (23%)

Query: 364 NNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNG 423
           N  +   ++ +SL+  L     +  N++ L LSGN       + +   + L  L+LS N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN- 68

Query: 424 MNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYN 483
                      L E                     +L  L +  L            + N
Sbjct: 69  ----------VLYET----------------LDLESLSTLRTLDL------------NNN 90

Query: 484 WVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYL 543
                 ++ + +                  + ++   N  IS  +              +
Sbjct: 91  -----YVQELLV---------------GPSIETLHAANNNIS-RVSCSRGQGK----KNI 125

Query: 544 ILSNNQIKGKLPRQM--NSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPEN 601
            L+NN+I   L          ++ +DL  N  + T+                        
Sbjct: 126 YLANNKIT-MLRDLDEGCRSRVQYLDLKLNEID-TVN--------------------FAE 163

Query: 602 IGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGID 661
           + +    L+ L L +N +   +   V     L+ L + SNKL+                 
Sbjct: 164 LAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA----------------- 204

Query: 662 ISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLS-GSLP 720
                    +   F S   ++ + L NN L   I  +L+    L   DL GN    G+L 
Sbjct: 205 --------FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR 255

Query: 721 LWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVY 780
            + S+N     + +     L+G   +        H       +        +  L     
Sbjct: 256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALK---- 311

Query: 781 GNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSH 840
                          +    E  N       ID         I        A   L    
Sbjct: 312 -RKEHALLSGQGSETERLECERENQAR-QREIDALKEQYRTVIDQVTLRKQAKITLEQKK 369

Query: 841 NQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSLPNFND 879
             L   +     + A L               +    + 
Sbjct: 370 KALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSP 408

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  124 bits (313), Expect = 3e-30
 Identities = 76/514 (14%), Positives = 143/514 (27%), Gaps = 85/514 (16%)

Query: 259 FINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDL 318
             N     +  ++++S   A+     S  ++ +L L  N  +     + A    LE+L+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 319 SNNLDLGGQLPKL--FGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSL 376
           S+N      L +      L  L++LDL+ N +     E   G      ++E L  ++N++
Sbjct: 66  SSN-----VLYETLDLESLSTLRTLDLNNNYVQ----ELLVG-----PSIETLHAANNNI 111

Query: 377 EGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNG-TIPESFGKL 435
              +       +  + + L+ N          G  S ++ LDL  N ++     E     
Sbjct: 112 S-RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 436 SELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQI 495
             L   NL  N    +  +  F  LK L               ++S N     +L  +  
Sbjct: 169 DTLEHLNLQYNFIYDVKGQVVFAKLKTL---------------DLSSN-----KLAFMGP 208

Query: 496 ENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLP 555
           E                                    F   +  +T++ L NN++   + 
Sbjct: 209 E------------------------------------FQSAAG-VTWISLRNNKLV-LIE 230

Query: 556 RQM-NSPNLRSIDLSSNHFE-GTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLY 613
           + +  S NL   DL  N F  GTL  + +    +     +    L              +
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 614 LSWNQLSGRIPSSVCNLEDLQILSIRSNKLSG----EFPNCWYHSQMFWGIDISNNSLTG 669
                           L  L+          G           +      ID        
Sbjct: 291 YGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT 350

Query: 670 SIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSS 729
            I       ++   L      L   +    +    L             L     E    
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ-IELQHATEEQSPL 409

Query: 730 FFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNN 763
             +  +        + Q+      +   D+  + 
Sbjct: 410 QLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHK 443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 87.2 bits (216), Expect = 5e-18
 Identities = 42/354 (11%), Positives = 89/354 (25%), Gaps = 44/354 (12%)

Query: 124 SLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYL 183
                  +  LDL LN+ +     E       L +LNL ++    ++  Q+   + L+ L
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTL 196

Query: 184 DLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVEL 243
           DL     SSN          L ++                                +  +
Sbjct: 197 DL-----SSN---------KLAFMGP-----------------------EFQSAAGVTWI 219

Query: 244 RLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHI 303
            L   +L  I  +       ++   DL  N F+       F   +     +         
Sbjct: 220 SLRNNKLVLIEKA--LRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLT 276

Query: 304 PNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRP 363
                   +  +             P     L  LK  + +  +  G   E  +      
Sbjct: 277 GQNEEECTVPTLGHYGAYCCEDLPAP-FADRLIALKRKEHALLSGQGSETERLECERENQ 335

Query: 364 NNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNG 423
                +D         + +     +    L     +    + +     + L        G
Sbjct: 336 ARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG 395

Query: 424 MNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFV 477
               +  +  + S L     +   +E +  E Q +    +  + +      +  
Sbjct: 396 QI-ELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLA 448

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 79.9 bits (197), Expect = 1e-15
 Identities = 39/205 (19%), Positives = 77/205 (37%), Gaps = 31/205 (15%)

Query: 670 SIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSS 729
           +I     +     +  +++++L   +    Q+   +  +DL GN LS      ++   + 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-PFTK 59

Query: 730 FFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNN------ 783
             +L L SN+L  +    L +L  L  +DL++N     +     ++  L   NN      
Sbjct: 60  LELLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQ-ELLVGP-SIETLHAANNNISRVS 115

Query: 784 SEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQL 843
               Q                      +I L+ N +T     + G  S +  L+L  N++
Sbjct: 116 CSRGQGK-------------------KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156

Query: 844 SG-AIPQSLSSLASLSKLNLSFNNL 867
                 +  +S  +L  LNL +N +
Sbjct: 157 DTVNFAELAASSDTLEHLNLQYNFI 181

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.5 bits (131), Expect = 9e-08
 Identities = 26/271 (9%), Positives = 74/271 (27%), Gaps = 16/271 (5%)

Query: 121 INPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSL 180
           I  +L   + L+  DL  N F    + ++F + + ++ +     +            +  
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK--QTVKKLTGQNEEECTVP 286

Query: 181 QYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSL 240
                 A          A     L          LL+    + + +  +           
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALK----RKEHALLSGQGSETERLECEREN----QARQ 338

Query: 241 VELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFT 300
            E+     Q + +   +  +   +   L+  + + +  +     +   L     +     
Sbjct: 339 REIDALKEQYRTVIDQV-TLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAV-GQ 396

Query: 301 GHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFS 360
             + +       L++L           + +       ++  D+  +       +  +  +
Sbjct: 397 IELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET----QLAEENA 452

Query: 361 GRPNNLEYLDLSSNSLEGELPKSLGNLKNLQ 391
                    DL+  S    L + +   +NL 
Sbjct: 453 RLKKLNGEADLALASANATLQELVVREQNLA 483

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  128 bits (324), Expect = 1e-31
 Identities = 73/322 (22%), Positives = 129/322 (40%), Gaps = 27/322 (8%)

Query: 155 NLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNS-GSLALHAQNLNWLSGLSSL 213
             R L+L  +        +  S   L+ L+L     + N   ++   A      + L +L
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELEL-----NENIVSAVEPGA-----FNNLFNL 82

Query: 214 KLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSEN 273
           + L L   +L  +          L +L +L +   ++  +   + F +  ++  L++ +N
Sbjct: 83  RTLGLRSNRLKLIPLGVFTG---LSNLTKLDISENKIVILLDYM-FQDLYNLKSLEVGDN 138

Query: 274 SFNSAIPPWLFS-LTSLTKLYLRWNFFTGHIPNE-FANLKLLEVLDLSNNLDLGGQLPKL 331
                I    FS L SL +L L     T  IP E  ++L  L VL L +  ++       
Sbjct: 139 DLVY-ISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHL-NINAIRDYS 195

Query: 332 FGILRRLKSLDLSANNLNGEVHE-FFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNL 390
           F  L RLK L++S       +      G      NL  L ++  +L      ++ +L  L
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGL-----NLTSLSITHCNLTAVPYLAVRHLVYL 250

Query: 391 QYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEG 450
           ++L LS N       S +  L  L+++ L    +    P +F  L+ L   N+  N    
Sbjct: 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT- 309

Query: 451 ILQESQFMNLKRLESFRLTTEP 472
            L+ES F ++  LE+  L + P
Sbjct: 310 TLEESVFHSVGNLETLILDSNP 331

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  120 bits (303), Expect = 7e-29
 Identities = 73/382 (19%), Positives = 128/382 (33%), Gaps = 66/382 (17%)

Query: 242 ELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFS-LTSLTKLYLRWNFFT 300
            +  H  +   +P  +P    T   +LDL +N     +    F+    L +L L  N  +
Sbjct: 15  AVLCHRKRFVAVPEGIP----TETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVS 69

Query: 301 GHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFS 360
              P  F NL  L  L L +N  L      +F  L  L  LD+S N +   +   F    
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128

Query: 361 GRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLS 420
               NL+ L++  N L     ++   L +L+ L L   +       ++ +L  L  L L 
Sbjct: 129 ----NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184

Query: 421 YNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNV 480
           +  +N     SF +L  L    +    +   +  +    L  L S  +            
Sbjct: 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSI------------ 231

Query: 481 SYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEI 540
           ++       L ++            + ++    L  + L    IS TI G    +L   +
Sbjct: 232 THC-----NLTAVP----------YLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLR-L 274

Query: 541 TYLILSNNQIKGKLPRQM--NSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPL 598
             + L   Q+   +          LR +++S N                          L
Sbjct: 275 QEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTT----------------------L 311

Query: 599 PENIGSLMPRLQRLYLSWNQLS 620
            E++   +  L+ L L  N L+
Sbjct: 312 EESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  118 bits (297), Expect = 4e-28
 Identities = 70/373 (18%), Positives = 130/373 (34%), Gaps = 66/373 (17%)

Query: 511 QTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQM--NSPNLRSIDL 568
             +  +V+         +P      + +E   L L  N+IK  L +    + P+L  ++L
Sbjct: 10  SAQDRAVLCHRKRFV-AVPEG----IPTETRLLDLGKNRIK-TLNQDEFASFPHLEELEL 63

Query: 569 SSNH--------FEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLS 620
           + N         F         N   L L+ NR    +P  + + +  L +L +S N++ 
Sbjct: 64  NENIVSAVEPGAFNNL-----FNLRTLGLRSNRLKL-IPLGVFTGLSNLTKLDISENKIV 117

Query: 621 GRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWG------IDISNNSLTGSIPSS 674
             +     +L +L+ L +  N L     +     + F G      + +   +LT     +
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLV-YISH-----RAFSGLNSLEQLTLEKCNLTSIPTEA 171

Query: 675 FGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLR 734
              L  L VL L + N++     S +    L  +++       ++       L+    L 
Sbjct: 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS-LS 230

Query: 735 LRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRV 794
           +    L+      + +L  L  ++LS+N  S  I                 +  +L+   
Sbjct: 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIE--------------GSMLHELLR-- 273

Query: 795 VKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSL 854
                         +  I L    L    P     L+ L +LN+S NQL+        S+
Sbjct: 274 --------------LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV 319

Query: 855 ASLSKLNLSFNNL 867
            +L  L L  N L
Sbjct: 320 GNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  115 bits (290), Expect = 3e-27
 Identities = 68/345 (19%), Positives = 124/345 (35%), Gaps = 49/345 (14%)

Query: 211 SSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDL 270
           +  +LL+LG  ++  +  D   +    P L EL L+   +  +     F N  ++  L L
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFAS---FPHLEELELNENIVSAVEPGA-FNNLFNLRTLGL 87

Query: 271 SENSFNSAIPPWLFS-LTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQL- 328
             N     IP  +F+ L++LTKL +  N     +   F +L  L+ L++ +N      L 
Sbjct: 88  RSNRL-KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-----DLV 141

Query: 329 ---PKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLG 385
               + F  L  L+ L L   NL     E           L  L L   ++      S  
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH----GLIVLRLRHLNINAIRDYSFK 197

Query: 386 NLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQ 445
            L  L+ L +S   +  ++  +     +L  L +++  +      +   L  L   NL  
Sbjct: 198 RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257

Query: 446 NSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFP 505
           N    I + S    L RL+  +L                    +L  ++          P
Sbjct: 258 NPISTI-EGSMLHELLRLQEIQL------------VGG-----QLAVVE----------P 289

Query: 506 VWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQI 550
              +    L  + +    ++ T+    F  + + +  LIL +N +
Sbjct: 290 YAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGN-LETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  109 bits (275), Expect = 2e-25
 Identities = 76/412 (18%), Positives = 131/412 (31%), Gaps = 88/412 (21%)

Query: 363 PNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSI-GNLSSLRKLDLSY 421
           P     LDL  N ++        +  +L+ L L+ N    ++      NL +LR L L  
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRS 89

Query: 422 NGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVS 481
           N +       F  LS L   ++ +N    +  +  F +L  L+S  +             
Sbjct: 90  NRLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNLKSLEV------------G 136

Query: 482 YNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEIT 541
            N      L  I                                       FS L+S + 
Sbjct: 137 DN-----DLVYI-----------------------------------SHRAFSGLNS-LE 155

Query: 542 YLILSNNQIKGKLPRQMNS--PNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLP 599
            L L    +   +P +  S    L  + L   +                ++D  F     
Sbjct: 156 QLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN-------------AIRDYSFKR--- 198

Query: 600 ENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWG 659
                 + RL+ L +S       +  +     +L  LSI    L+        H      
Sbjct: 199 ------LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRF 252

Query: 660 IDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSL 719
           +++S N ++    S    L  L  + L    L+   P + +    L  +++ GNQL+ +L
Sbjct: 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TL 311

Query: 720 PLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRC 771
              +  ++ +   L L SN L+ D     C L  +        NF+   P C
Sbjct: 312 EESVFHSVGNLETLILDSNPLACD-----CRLLWVF-RRRWRLNFNRQQPTC 357

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 87.5 bits (217), Expect = 4e-18
 Identities = 45/215 (20%), Positives = 74/215 (34%), Gaps = 34/215 (15%)

Query: 660 IDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSL 719
           +D+  N +       F S   L  L L+ N +S   P +  N   L ++ L  N+L   +
Sbjct: 37  LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LI 95

Query: 720 PLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALV 779
           PL +   LS+   L +  N +   +     +L NL  +++  N+      R    L++L 
Sbjct: 96  PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155

Query: 780 YGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEI-GNLSALHILNL 838
                                           + L   NLT  IP E   +L  L +L L
Sbjct: 156 -------------------------------QLTLEKCNLT-SIPTEALSHLHGLIVLRL 183

Query: 839 SHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPS 873
            H  ++     S   L  L  L +S       +  
Sbjct: 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP 218

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 74.0 bits (182), Expect = 8e-14
 Identities = 40/179 (22%), Positives = 70/179 (39%), Gaps = 20/179 (11%)

Query: 124 SLLHLKYLDTLDLSLNDFEGAEIPEY-FGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQY 182
           +L HL  L  L L   +     I +Y F +L  L+ L +S   +   + P      +L  
Sbjct: 171 ALSHLHGLIVLRLRHLNIN--AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS 228

Query: 183 LDLYADSFSSNS-GSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLV 241
           L +     +  +  ++   A     +  L  L+ LNL +  +  +    L     L  L 
Sbjct: 229 LSI-----THCNLTAVPYLA-----VRHLVYLRFLNLSYNPISTIEGSMLHE---LLRLQ 275

Query: 242 ELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLF-SLTSLTKLYLRWNFF 299
           E++L   QL  +     F     + VL++S N   + +   +F S+ +L  L L  N  
Sbjct: 276 EIQLVGGQLAVVE-PYAFRGLNYLRVLNVSGNQL-TTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 17/133 (12%)

Query: 121 INPSLLHLKYLDTLDLSLNDFEGAEIPEY-FGQLKNLRYLNLSFSSFSGEIPPQ-LGSLS 178
           + P+ L+   L +L ++  +     +P      L  LR+LNLS++  S  I    L  L 
Sbjct: 216 MTPNCLYGLNLTSLSITHCNLT--AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELL 272

Query: 179 SLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLP 238
            LQ + L             L         GL+ L++LN+   +L  +        + + 
Sbjct: 273 RLQEIQL-----VGGQ----LAVVEPYAFRGLNYLRVLNVSGNQLTTLEES---VFHSVG 320

Query: 239 SLVELRLHYCQLQ 251
           +L  L L    L 
Sbjct: 321 NLETLILDSNPLA 333

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  128 bits (323), Expect = 6e-31
 Identities = 77/346 (22%), Positives = 129/346 (37%), Gaps = 52/346 (15%)

Query: 562 NLRSIDLSSNHFEGTLPL-WSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLS 620
               +++  +    TLP     +   L + DN  +  LP     L    + L +S NQL+
Sbjct: 41  GNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLTS-LPALPPEL----RTLEVSGNQLT 94

Query: 621 GRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRS 680
             +P     L +L I S     L                + I  N LT S+P     L+ 
Sbjct: 95  -SLPVLPPGLLELSIFSNPLTHLPALPSGLCK-------LWIFGNQLT-SLPVLPPGLQE 145

Query: 681 LSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLL 740
           LS   +S+N L+  +P        L  +    NQL+ SLP+  S  L     L +  N L
Sbjct: 146 LS---VSDNQLAS-LPALPSE---LCKLWAYNNQLT-SLPMLPS-GLQE---LSVSDNQL 193

Query: 741 SGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNP 800
           +  +P     L  L      +N  + ++P     L  L+   N     +L          
Sbjct: 194 A-SLPTLPSELYKL---WAYNNRLT-SLPALPSGLKELIVSGN-----RLT--------- 234

Query: 801 EYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKL 860
               + +++  + +S N LT  +P     L     L++  NQL+  +P+SL  L+S + +
Sbjct: 235 SLPVLPSELKELMVSGNRLT-SLPMLPSGL---LSLSVYRNQLT-RLPESLIHLSSETTV 289

Query: 861 NLSFNNLAGKIPSLPNFNDPSIYEGNPLLCGAPLPTKCPGKHSPLH 906
           NL  N L+ +          +     P++         P +   LH
Sbjct: 290 NLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH 335

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  128 bits (323), Expect = 7e-31
 Identities = 77/438 (17%), Positives = 140/438 (31%), Gaps = 82/438 (18%)

Query: 362 RPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSY 421
             N    L++  + L   LP  L    ++  L +  N+   S+P+       LR L++S 
Sbjct: 38  LNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNL-TSLPALPPE---LRTLEVSG 90

Query: 422 NGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVS 481
           N +  ++P     L EL   +        +        L +L                + 
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLPALPS-----GLCKL---------------WIF 129

Query: 482 YNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEIT 541
            N     +L S+        P  P        L  + + +  ++ ++P    S+L     
Sbjct: 130 GN-----QLTSL--------PVLP------PGLQELSVSDNQLA-SLP-ALPSEL----C 164

Query: 542 YLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPEN 601
            L   NNQ+   LP       L+ + +S N    +LP   +   +L+  +NR +  LP  
Sbjct: 165 KLWAYNNQLT-SLPMLP--SGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLT-SLPAL 219

Query: 602 IGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLS---GEFPNCWYHSQMFW 658
                  L+ L +S N+L+  +P        L+ L +  N+L+                 
Sbjct: 220 PSG----LKELIVSGNRLT-SLPVLPSE---LKELMVSGNRLTSLPMLPSGLLS------ 265

Query: 659 GIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGS 718
            + +  N LT  +P S   L S + + L  N LS            +TS       +   
Sbjct: 266 -LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ---ALREITSAPGYSGPIIRF 320

Query: 719 LPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSAL 778
                S    +  +    ++ L              H       + + A    +  LS  
Sbjct: 321 DMAGASAPRETRALHLAAADWLVPAREGEPAPADRWH--MFGQEDNADAFSLFLDRLSET 378

Query: 779 VYGNNSEVFQQLIWRVVK 796
                   F+  I   + 
Sbjct: 379 ENFIKDAGFKAQISSWLA 396

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  113 bits (285), Expect = 3e-26
 Identities = 61/344 (17%), Positives = 110/344 (31%), Gaps = 47/344 (13%)

Query: 128 LKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYA 187
             ++ TL +  N+     +P        LR L +S +  +  +P     L  L       
Sbjct: 60  PAHITTLVIPDNNLT--SLPALPP---ELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPL 113

Query: 188 DSFS---SNSGSLALHAQNLNWL-SGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVEL 243
                  S    L +    L  L      L+ L++   +L  + A       +   L +L
Sbjct: 114 THLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPA-------LPSELCKL 166

Query: 244 RLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHI 303
             +  QL  +P+       + +  L +S+N   S +P     L  L     R        
Sbjct: 167 WAYNNQLTSLPMLP-----SGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALP 220

Query: 304 PNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRP 363
                    L+ L +S N     +L  L  +   LK L +S N L              P
Sbjct: 221 SG-------LKELIVSGN-----RLTSLPVLPSELKELMVSGNRL--------TSLPMLP 260

Query: 364 NNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLD---LS 420
           + L  L +  N L   LP+SL +L +   + L GN        ++  ++S        + 
Sbjct: 261 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIR 319

Query: 421 YNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLE 464
           ++    + P     L       L+           ++    + +
Sbjct: 320 FDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQED 363

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 99.2 bits (247), Expect = 2e-21
 Identities = 77/435 (17%), Positives = 130/435 (29%), Gaps = 97/435 (22%)

Query: 210 LSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLD 269
            +   +LN+G   L  +         +   +  L +    L  +P   P      +  L+
Sbjct: 39  NNGNAVLNVGESGLTTL------PDCLPAHITTLVIPDNNLTSLPALPP-----ELRTLE 87

Query: 270 LSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLP 329
           +S N   S +P     L  L+           H+P   + L     L +  N     QL 
Sbjct: 88  VSGNQLTS-LPVLPPGLLELSIFSNPLT----HLPALPSGLC---KLWIFGN-----QLT 134

Query: 330 KLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKN 389
            L  +   L+ L +S N L              P+ L  L   +N L   LP        
Sbjct: 135 SLPVLPPGLQELSVSDNQLA--------SLPALPSELCKLWAYNNQLT-SLPMLPS---G 182

Query: 390 LQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWE 449
           LQ L +S N    S+P+       L KL    N +  ++P     L EL    +  N   
Sbjct: 183 LQELSVSDNQL-ASLPTLPSE---LYKLWAYNNRLT-SLPALPSGLKEL---IVSGN--- 231

Query: 450 GILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQ 509
                       RL S  L   P++               LK + +   ++  S P+   
Sbjct: 232 ------------RLTS--LPVLPSE---------------LKELMVSGNRLT-SLPMLP- 260

Query: 510 VQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLS 569
             + L S+ +    ++  +P +    LSS  T + L  N +            + S    
Sbjct: 261 --SGLLSLSVYRNQLT-RLP-ESLIHLSS-ETTVNLEGNPLSE--RTLQALREITSAPGY 313

Query: 570 SNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCN 629
           S              D       R +  L       +   +                   
Sbjct: 314 SGPI--------IRFDMAGASAPRETRALHLAAADWLVPAREG----EPAPADRWHMFGQ 361

Query: 630 LEDLQILSIRSNKLS 644
            ++    S+  ++LS
Sbjct: 362 EDNADAFSLFLDRLS 376

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 61.4 bits (149), Expect = 9e-10
 Identities = 45/263 (17%), Positives = 78/263 (29%), Gaps = 29/263 (11%)

Query: 120 KINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSS 179
            +      L  L   +  L       +P        L+ L++S +  +  +P     L  
Sbjct: 155 SLPALPSELCKLWAYNNQLT-----SLPM---LPSGLQELSVSDNQLA-SLPTLPSELYK 205

Query: 180 LQYLDLYADSFSSNSGSL-ALHAQNLNWLSGL----SSLKLLNLGFVKLDHVGADWLQAV 234
           L   +    S  +    L  L     N L+ L    S LK L +   +L  +        
Sbjct: 206 LWAYNNRLTSLPALPSGLKELIVSG-NRLTSLPVLPSELKELMVSGNRLTSLP------- 257

Query: 235 NMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYL 294
            +   L+ L ++  QL  +P SL  I+ +S + ++L  N  +      L  +TS      
Sbjct: 258 MLPSGLLSLSVYRNQLTRLPESL--IHLSSETTVNLEGNPLSERTLQALREITSAPGYSG 315

Query: 295 RWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHE 354
               F     +     +    L L+    L            R        N        
Sbjct: 316 PIIRFDMAGASA---PRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDN--ADAFSL 370

Query: 355 FFDGFSGRPNNLEYLDLSSNSLE 377
           F D  S   N ++     +    
Sbjct: 371 FLDRLSETENFIKDAGFKAQISS 393

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 55.7 bits (134), Expect = 5e-08
 Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 24/131 (18%)

Query: 747 RLCNLQNLHIIDLSHNNFSGAIPRCIG-NLSALVYGNNSEVFQQLIWRVVKGRNPEYSNI 805
           R C      ++++  +  +  +P C+  +++ LV  +N+                    +
Sbjct: 35  RACLNNGNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLT--------------SLPAL 79

Query: 806 IADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFN 865
             ++ ++++S N LT  +P     L  L I +     L        +  + L KL +  N
Sbjct: 80  PPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIFGN 131

Query: 866 NLAGKIPSLPN 876
            L       P 
Sbjct: 132 QLTSLPVLPPG 142

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  124 bits (314), Expect = 7e-31
 Identities = 69/345 (20%), Positives = 117/345 (33%), Gaps = 41/345 (11%)

Query: 122 NPSLLHLKYLDTLDLSLNDFEGAEIP-EYFGQLKNLRYLNLSFSSFSGEIPPQ-LGSLSS 179
               + L     +    +     ++P       + +  LNL+      EI         +
Sbjct: 38  GFEDITLNNQKIVTFKNSTMR--KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHT 94

Query: 180 LQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPS 239
           +Q L +       N+    +     +    +  L +L L    L  +        +  P 
Sbjct: 95  IQKLYM-----GFNA----IRYLPPHVFQNVPLLTVLVLERNDLSSLPRG---IFHNTPK 142

Query: 240 LVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFF 299
           L  L +    L+ I     F   TS+  L LS N     +   L    SL    + +N  
Sbjct: 143 LTTLSMSNNNLERIEDDT-FQATTSLQNLQLSSNRLTH-VDLSLI--PSLFHANVSYNLL 198

Query: 300 TGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL-FGILRRLKSLDLSANNLNGEVHEFFDG 358
           +       A    +E LD S+N      +  +   +   L  L L  NNL          
Sbjct: 199 S-----TLAIPIAVEELDASHN-----SINVVRGPVNVELTILKLQHNNLTD-----TAW 243

Query: 359 FSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLD 418
               P  L  +DLS N LE  +      ++ L+ L +S N    ++      + +L+ LD
Sbjct: 244 LLNYP-GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLD 301

Query: 419 LSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRL 463
           LS+N +   +  +  +   L +  L  NS    L+ S    LK L
Sbjct: 302 LSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLKNL 344

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  121 bits (306), Expect = 9e-30
 Identities = 72/344 (20%), Positives = 120/344 (34%), Gaps = 45/344 (13%)

Query: 124 SLLHLKYLDTLDLSLNDFEGAEIPEY-FGQLKNLRYLNLSFSSFSGEIPPQ-LGSLSSLQ 181
            L   + ++ L+L+    E  EI  Y F     ++ L + F++    +PP    ++  L 
Sbjct: 64  LLDSFRQVELLNLNDLQIE--EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT 120

Query: 182 YLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLV 241
            L L  +  SS    +               L  L++    L+ +  D  QA     SL 
Sbjct: 121 VLVLERNDLSSLPRGI---------FHNTPKLTTLSMSNNNLERIEDDTFQA---TTSLQ 168

Query: 242 ELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTG 301
            L+L   +L  + LS       S+   ++S N  ++     L    ++ +L    N    
Sbjct: 169 NLQLSSNRLTHVDLS----LIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN- 218

Query: 302 HIPNEFANLKLLEVLDLSNNLDLGGQLPKL--FGILRRLKSLDLSANNLNGEVHEFFDGF 359
            +         L +L L +N      L           L  +DLS N L   ++  F   
Sbjct: 219 VVRGPV--NVELTILKLQHN-----NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271

Query: 360 SGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDL 419
                 LE L +S+N L   L      +  L+ L LS N     +  +      L  L L
Sbjct: 272 Q----RLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYL 325

Query: 420 SYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRL 463
            +N +      +   L  L    L  N W+     + F N+ R 
Sbjct: 326 DHNSIVTLKLSTHHTLKNL---TLSHNDWDCNSLRALFRNVARP 366

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  118 bits (298), Expect = 9e-29
 Identities = 77/454 (16%), Positives = 141/454 (31%), Gaps = 100/454 (22%)

Query: 277 SAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILR 336
             I   L        +++       +   E   L   +++   N+  +      L    R
Sbjct: 11  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS-TMRKLPAALLDSFR 69

Query: 337 RLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLS 396
           +++ L+L+   +       F         ++ L +  N++    P    N+  L  L L 
Sbjct: 70  QVELLNLNDLQIEEIDTYAFAYAH----TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125

Query: 397 GNSFWGSIPSSI-GNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQES 455
            N    S+P  I  N   L  L +S N +     ++F   + L +  L  N    +   S
Sbjct: 126 RNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLS 183

Query: 456 QFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELT 515
              +L                  NVSYN      L ++ I                  + 
Sbjct: 184 LIPSLFHA---------------NVSYN-----LLSTLAI---------------PIAVE 208

Query: 516 SVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEG 575
            +   +  I+  + G    +L    T L L +N +       +N P L  +DLS N  E 
Sbjct: 209 ELDASHNSIN-VVRGPVNVEL----TILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELE- 261

Query: 576 TLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQI 635
                        +  + F           M RL+RLY+S N+L   +      +  L++
Sbjct: 262 ------------KIMYHPFVK---------MQRLERLYISNNRLV-ALNLYGQPIPTLKV 299

Query: 636 LSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGI 695
           L +  N L                           +  +      L  L L +N++   +
Sbjct: 300 LDLSHNHLL-------------------------HVERNQPQFDRLENLYLDHNSIV-TL 333

Query: 696 PCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSS 729
              L     L ++ L  N    +    +  N++ 
Sbjct: 334 K--LSTHHTLKNLTLSHNDWDCNSLRALFRNVAR 365

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  115 bits (291), Expect = 7e-28
 Identities = 73/375 (19%), Positives = 136/375 (36%), Gaps = 56/375 (14%)

Query: 538 SEITYLILSNNQIKGKLPRQM--NSPNLRSIDLSSNHFEGTLPLWS----TNADELFLQD 591
           +    +   N+ ++ KLP  +  +   +  ++L+    E  +  ++        +L++  
Sbjct: 45  NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGF 102

Query: 592 NRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSV-CNLEDLQILSIRSNKLSGEFPNC 650
           N     LP ++   +P L  L L  N LS  +P  +  N   L  LS+ +N L     + 
Sbjct: 103 NAIRY-LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDT 160

Query: 651 WYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDL 710
           +  +     + +S+N LT  +      + SL    +S N LS     +L     +  +D 
Sbjct: 161 FQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDA 212

Query: 711 GGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPR 770
             N ++  +   ++  L+    L+L+ N L+ D    L N   L  +DLS+N     +  
Sbjct: 213 SHNSIN-VVRGPVNVELTI---LKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYH 266

Query: 771 CIGNLSALVY----GNN----SEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQ 822
               +  L       N     +   Q +                  +  +DLS N+L   
Sbjct: 267 PFVKMQRLERLYISNNRLVALNLYGQPI----------------PTLKVLDLSHNHLL-H 309

Query: 823 IPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAG--KIPSLPNFNDP 880
           +         L  L L HN +   +   LS+  +L  L LS N+           N   P
Sbjct: 310 VERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARP 366

Query: 881 SIYEGNPLLCGAPLP 895
           ++ +     C     
Sbjct: 367 AVDD-ADQHCKIDYQ 380

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  111 bits (279), Expect = 3e-26
 Identities = 76/413 (18%), Positives = 131/413 (31%), Gaps = 79/413 (19%)

Query: 235 NMLPSLVELRLHY-CQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFS-LTSLTKL 292
           N+    V   +H   Q Q +      I   +  ++    ++    +P  L      +  L
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-RKLPAALLDSFRQVELL 74

Query: 293 YLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEV 352
            L            FA    ++ L +  N  +    P +F  +  L  L L  N+L+   
Sbjct: 75  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSSLP 133

Query: 353 HEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLS 412
              F         L  L +S+N+LE     +     +LQ L+LS N     +   +  + 
Sbjct: 134 RGIFHNTP----KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIP 186

Query: 413 SLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEP 472
           SL   ++SYN +      +      + + +   NS   +++    + L  L         
Sbjct: 187 SLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPVNVELTIL--------- 231

Query: 473 TKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDW 532
                  + +N      L                WL     L  V L    +   I    
Sbjct: 232 ------KLQHN-----NLTDTA------------WLLNYPGLVEVDLSYNELE-KIMYHP 267

Query: 533 FSKLSSEITYLILSNNQIKGKLPRQMNS-PNLRSIDLSSNHFEGTLPLWSTNADELFLQD 591
           F K+   +  L +SNN++   L       P L+ +DLS NH                   
Sbjct: 268 FVKMQR-LERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH---------------- 309

Query: 592 NRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLS 644
                 +  N      RL+ LYL  N +   +  S      L+ L++  N   
Sbjct: 310 ------VERNQPQF-DRLENLYLDHNSIV-TLKLS--THHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  110 bits (278), Expect = 4e-26
 Identities = 74/430 (17%), Positives = 145/430 (33%), Gaps = 74/430 (17%)

Query: 146 IPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLN 205
           I            +++   +       +  +L++ + +     +      +L        
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL-------- 64

Query: 206 WLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSI 265
            L     ++LLNL  ++++ +            ++ +L + +  ++ +P  + F N   +
Sbjct: 65  -LDSFRQVELLNLNDLQIEEIDTYAFAY---AHTIQKLYMGFNAIRYLPPHV-FQNVPLL 119

Query: 266 SVLDLSENSFNSAIPPWLFS-LTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDL 324
           +VL L  N  +S +P  +F     LT L +  N       + F     L+ L LS+N   
Sbjct: 120 TVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN--- 175

Query: 325 GGQLPKL-FGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKS 383
             +L  +   ++  L   ++S N L+             P  +E LD S NS+   +   
Sbjct: 176 --RLTHVDLSLIPSLFHANVSYNLLS---------TLAIPIAVEELDASHNSIN-VVRGP 223

Query: 384 LGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANL 443
           +     L  L+L  N+   +  + + N   L ++DLSYN +   +   F K+  L    +
Sbjct: 224 V--NVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279

Query: 444 LQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPS 503
             N    +        +  L+   L            S+N      L  +          
Sbjct: 280 SNNRLVAL--NLYGQPIPTLKVLDL------------SHN-----HLLHV---------- 310

Query: 504 FPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKG----KLPRQMN 559
                     L ++ L +  I  T+       L      L LS+N         L R + 
Sbjct: 311 -ERNQPQFDRLENLYLDHNSIV-TLKLSTHHTL----KNLTLSHNDWDCNSLRALFRNVA 364

Query: 560 SPNLRSIDLS 569
            P +   D  
Sbjct: 365 RPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  101 bits (253), Expect = 5e-23
 Identities = 59/318 (18%), Positives = 113/318 (35%), Gaps = 46/318 (14%)

Query: 550 IKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRL 609
           I   L       ++     + + + G   +   N   +  +++     LP  +     ++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFRQV 71

Query: 610 QRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTG 669
           + L L+  Q+      +      +Q L +  N +    P+ + +  +   + +  N L+ 
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131

Query: 670 SIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSS 729
                F +   L+ L +SNNNL      + Q  T L ++ L  N+L+  + L     + S
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL---SLIPS 187

Query: 730 FFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQ 789
            F   +  NLLS      L     +  +D SHN+ +  +                 V  +
Sbjct: 188 LFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG--------------PVNVE 227

Query: 790 LIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQ 849
           L                     + L  NNLT      + N   L  ++LS+N+L   +  
Sbjct: 228 LT-------------------ILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYH 266

Query: 850 SLSSLASLSKLNLSFNNL 867
               +  L +L +S N L
Sbjct: 267 PFVKMQRLERLYISNNRL 284

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 32/149 (21%), Positives = 54/149 (36%), Gaps = 20/149 (13%)

Query: 123 PSLLHLKYLDTLDLSLNDFEGAEIPEY-FGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQ 181
             LL+   L  +DLS N+ E  +I  + F +++ L  L +S +     +      + +L+
Sbjct: 242 AWLLNYPGLVEVDLSYNELE--KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLK 298

Query: 182 YLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLV 241
            LDL     S N     L     N       L+ L L    +  +       ++   +L 
Sbjct: 299 VLDL-----SHNH----LLHVERN-QPQFDRLENLYLDHNSIVTL------KLSTHHTLK 342

Query: 242 ELRLHYCQLQGIPLSLPFINFTSISVLDL 270
            L L +       L   F N    +V D 
Sbjct: 343 NLTLSHNDWDCNSLRALFRNVARPAVDDA 371

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  126 bits (319), Expect = 1e-30
 Identities = 99/509 (19%), Positives = 180/509 (35%), Gaps = 41/509 (8%)

Query: 245 LHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIP 304
                L  +P  L        ++L++S+N  +      + SL+ L  L +  N       
Sbjct: 7   RSKNGLIHVPKDLS----QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI 62

Query: 305 NEFANLKLLEVLDLSNNLDLGGQLPKL-FGILRRLKSLDLSANNLNG-EVHEFFDGFSGR 362
           + F   + LE LDLS+N     +L K+       LK LDLS N  +   + + F   S  
Sbjct: 63  SVFKFNQELEYLDLSHN-----KLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMS-- 115

Query: 363 PNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPS---SIGNLSSLRKLDL 419
              L++L LS+  LE      + +L   + L + G ++            N  SL  +  
Sbjct: 116 --QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173

Query: 420 SYNGMNGTIPESFGKLSELVDANLLQNSWEGILQ--ESQFMNLKRLESFRLTTEPTKKFV 477
           +    +  +  S   ++ L  +N+     +       S    L+        T    +  
Sbjct: 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233

Query: 478 FNVSYNWVPPFRLKSIQ---IENCQVG--PSFPVWLQVQTELTSVILRNVGISD-TIPGD 531
           +N     +      ++    I N ++     F  +    T L ++ +  V       P  
Sbjct: 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQS 293

Query: 532 WFSKLSSEITYLILSNNQIKGKLPRQMNSP-NLRSIDLSSNHFEGTLPLWS---TNADEL 587
           +  ++ S +     + +  +       +       +D S+N    T+       T  + L
Sbjct: 294 YIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL 353

Query: 588 FLQDNRFSG-PLPENIGSLMPRLQRLYLSWNQLSGRIPSSVC-NLEDLQILSIRSNKLSG 645
            LQ N+         + + M  LQ+L +S N +S       C   + L  L++ SN L+ 
Sbjct: 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413

Query: 646 EFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGL 705
               C         +D+ +N +  SIP     L +L  L +++N L           T L
Sbjct: 414 TIFRCLPPRIKV--LDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSL 470

Query: 706 TSIDLGGNQLSGS------LPLWISENLS 728
             I L  N    S      L  W+++N  
Sbjct: 471 QKIWLHTNPWDCSCPRIDYLSRWLNKNSQ 499

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  122 bits (307), Expect = 3e-29
 Identities = 92/526 (17%), Positives = 161/526 (30%), Gaps = 80/526 (15%)

Query: 360 SGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDL 419
                    L++S N +       + +L  L+ L +S N       S       L  LDL
Sbjct: 17  KDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76

Query: 420 SYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFN 479
           S+N +          L  L   +L  N+++ +    +F N+ +L+   L+T   +K    
Sbjct: 77  SHNKLVKISCHPTVNLKHL---DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVL 133

Query: 480 VSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSE 539
              +         + +         P  LQ     +  I+           D   K  + 
Sbjct: 134 PIAH--LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVAN 191

Query: 540 ITYLILSNNQIKGKLPRQMNSP------------NLRSIDLSSNHFEGTLPL-WSTNADE 586
           +    +       K    ++               L +I+ + N F   L L W T    
Sbjct: 192 LELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251

Query: 587 LFLQDNRFSGPLPENIGSL----MPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNK 642
             + + +  G L           +  L    +  +              ++ I +   + 
Sbjct: 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311

Query: 643 LSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNC 702
                  C      F  +D SNN LT ++  + G L  L  L+L  N L       L   
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-----ELSKI 366

Query: 703 TGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLC-NLQNLHIIDLSH 761
             +T+                   + S   L +  N +S D  +  C   ++L  +++S 
Sbjct: 367 AEMTT------------------QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408

Query: 762 NNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTG 821
           N  +  I RC+                                    +  +DL  N +  
Sbjct: 409 NILTDTIFRCLPPR---------------------------------IKVLDLHSNKIK- 434

Query: 822 QIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNL 867
            IP ++  L AL  LN++ NQL          L SL K+ L  N  
Sbjct: 435 SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  100 bits (250), Expect = 4e-22
 Identities = 69/432 (15%), Positives = 151/432 (34%), Gaps = 51/432 (11%)

Query: 127 HLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLY 186
               L  LDLS N F+   I + FG +  L++L LS +         +  L+  + L + 
Sbjct: 88  PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVL 147

Query: 187 ADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLH 246
            +++        L   N   L  +          + +       L+  N+   L + +  
Sbjct: 148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS 207

Query: 247 YC-QLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPN 305
           Y   +     + P ++  +++ ++ + NSF   +   L   T++    +      G +  
Sbjct: 208 YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ--LVWHTTVWYFSISNVKLQGQLDF 265

Query: 306 E-----FANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFS 360
                   +LK L +  + ++   G     ++ I   +   + + +              
Sbjct: 266 RDFDYSGTSLKALSIHQVVSD-VFGFPQSYIYEIFSNMNIKNFTVSGTR----MVHMLCP 320

Query: 361 GRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIG---NLSSLRKL 417
            + +   +LD S+N L   + ++ G+L  L+ L L  N     +         + SL++L
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL-KELSKIAEMTTQMKSLQQL 379

Query: 418 DLSYNGMNGTIP-ESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKF 476
           D+S N ++             L+  N+  N                     LT    +  
Sbjct: 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSN--------------------ILTDTIFRCL 419

Query: 477 VFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKL 536
                     P R+K + + + ++  S P  +     L  + + +  +  ++P   F +L
Sbjct: 420 ----------PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRL 467

Query: 537 SSEITYLILSNN 548
           +S +  + L  N
Sbjct: 468 TS-LQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 75.7 bits (186), Expect = 3e-14
 Identities = 66/368 (17%), Positives = 137/368 (37%), Gaps = 31/368 (8%)

Query: 527 TIPGDWFSKLSSEITYLILSNNQIKGKLPRQM--NSPNLRSIDLSSNHFEGTLPLWSTNA 584
            +       LS ++  LI+S+N+I+  L   +   +  L  +DLS N         + N 
Sbjct: 35  ELWTSDILSLS-KLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVKISCHPTVNL 92

Query: 585 DELFLQDNRF-SGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKL 643
             L L  N F + P+ +  G++  +L+ L LS   L       + +L   ++L +     
Sbjct: 93  KHLDLSFNAFDALPICKEFGNM-SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY 151

Query: 644 SGEFPN---CWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNN----------- 689
             +        ++++    +  +N      +  S  ++ +L +  +              
Sbjct: 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS 211

Query: 690 NLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFM--LRLRSNLLSGDIPQR 747
            L+        +   L +I+   N     L L     +  F +  ++L+  L   D    
Sbjct: 212 ILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS 271

Query: 748 LCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIA 807
             +L+ L I  +  + F           S +   N +    +++  +         + I+
Sbjct: 272 GTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-------PSKIS 324

Query: 808 DVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLS--GAIPQSLSSLASLSKLNLSFN 865
               +D S N LT  + +  G+L+ L  L L  NQL     I +  + + SL +L++S N
Sbjct: 325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384

Query: 866 NLAGKIPS 873
           +++     
Sbjct: 385 SVSYDEKK 392

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 71.0 bits (174), Expect = 8e-13
 Identities = 41/234 (17%), Positives = 76/234 (32%), Gaps = 23/234 (9%)

Query: 120 KINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSS 179
             + S   LK L    +  + F   +    +    N+   N + S            +S 
Sbjct: 267 DFDYSGTSLKALSIHQVVSDVFGFPQ-SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISP 325

Query: 180 LQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPS 239
             +LD   +  +                  L+ L+ L L   +L  +     +    + S
Sbjct: 326 FLHLDFSNNLLTDTV---------FENCGHLTELETLILQMNQLKELS-KIAEMTTQMKS 375

Query: 240 LVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFF 299
           L +L +    +             S+  L++S N     I   L     +  L L  N  
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKI 433

Query: 300 TGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL----FGILRRLKSLDLSANNLN 349
              IP +   L+ L+ L++++N     QL  +    F  L  L+ + L  N  +
Sbjct: 434 K-SIPKQVVKLEALQELNVASN-----QLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  122 bits (307), Expect = 2e-29
 Identities = 91/468 (19%), Positives = 157/468 (33%), Gaps = 100/468 (21%)

Query: 246 HYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFS-LTSLTKLYLRWNFFTGHIP 304
               L  +P  LP      ++ +DLS NS    +    FS L  L  L +        I 
Sbjct: 18  INRGLHQVP-ELP----AHVNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPGLVIR 71

Query: 305 NE-FANLKLLEVLDLSNNLDLGGQL----PKLFGILRRLKSLDLSANNLNGEV--HEFFD 357
           N  F  L  L +L L  N     Q        F  L  L+ L L+  NL+G V    FF 
Sbjct: 72  NNTFRGLSSLIILKLDYN-----QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK 126

Query: 358 GFSGRPNNLEYLDLSSNSLEGELPKSL-GNLKNLQYLRLSGNSFWGSIPSSI-------- 408
             +    +LE L L  N+++   P S   N++    L L+ N    SI            
Sbjct: 127 PLT----SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKH 181

Query: 409 ---GNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLES 465
                LSS+   D++   +      +  K + +   +L  N ++  + +  F  +   + 
Sbjct: 182 FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241

Query: 466 FRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGIS 525
             L           +S ++           ++     +F       + + +  L    I 
Sbjct: 242 QSL----------ILSNSYNMGSSFGHTNFKDP---DNFTFKGLEASGVKTCDLSKSKIF 288

Query: 526 DTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNAD 585
             +    FS   +++  L L+ N+I                 +  N F G      T+  
Sbjct: 289 -ALLKSVFSHF-TDLEQLTLAQNEIN---------------KIDDNAFWGL-----THLL 326

Query: 586 ELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSV-CNLEDLQILSIRSNKLS 644
           +L L  N     +   +   + +L+ L LS+N +   +       L +L+ L++ +N+L 
Sbjct: 327 KLNLSQNFLGS-IDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK 384

Query: 645 GEFPNCWYHSQMFWGIDISNNSLTGSIPSS-FGSLRSLSVLLLSNNNL 691
                                    S+P   F  L SL  + L  N  
Sbjct: 385 -------------------------SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  104 bits (261), Expect = 1e-23
 Identities = 81/368 (22%), Positives = 134/368 (36%), Gaps = 47/368 (12%)

Query: 131 LDTLDLSLNDFEGAEIPEY-FGQLKNLRYLNLSFSSFSGEIPPQL-GSLSSLQYLDLYAD 188
           ++ +DLSLN    AE+ E  F +L++L++L +   +    I       LSSL  L L  +
Sbjct: 32  VNYVDLSLNSI--AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 189 SFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLD--HVGADWLQAVNMLPSLVELRLH 246
            F                 +GL++L++L L    LD   +  ++ +    L SL  L L 
Sbjct: 90  QFLQLETGA---------FNGLANLEVLTLTQCNLDGAVLSGNFFKP---LTSLEMLVLR 137

Query: 247 YCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLF-----------SLTSLTKLYLR 295
              ++ I  +  F+N     VLDL+ N   S I                 L+S+T   + 
Sbjct: 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKS-ICEEDLLNFQGKHFTLLRLSSITLQDMN 196

Query: 296 WNFFTGHIPNEFANLKLLEVLDLSNN------------LDLGGQLPKLFGILRRLKSLDL 343
             +              +  LDLS N               G ++  L            
Sbjct: 197 EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256

Query: 344 SANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGS 403
              N     +  F G     + ++  DLS + +   L     +  +L+ L L+ N     
Sbjct: 257 GHTNFKDPDNFTFKGLE--ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI-NK 313

Query: 404 IPSSI-GNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKR 462
           I  +    L+ L KL+LS N +       F  L +L   +L  N    +  +  F+ L  
Sbjct: 314 IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRAL-GDQSFLGLPN 372

Query: 463 LESFRLTT 470
           L+   L T
Sbjct: 373 LKELALDT 380

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 97.1 bits (242), Expect = 2e-21
 Identities = 69/314 (21%), Positives = 112/314 (35%), Gaps = 47/314 (14%)

Query: 127 HLKYLDTLDLSLNDFEGAEIPE-YFGQLKNLRYLNLSFSSFSGEIPPQ--LGSLSSLQYL 183
            L  L+ L L+  + +GA +   +F  L +L  L L  ++   +I P     ++     L
Sbjct: 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVL 159

Query: 184 DLY--------ADSFSSNSGS----LALHAQNLNWLS-------------GLSSLKLLNL 218
           DL          +   +  G     L L +  L  ++               +S+  L+L
Sbjct: 160 DLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDL 219

Query: 219 GFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLS------LPFINF-----TSISV 267
                    A           +  L L      G               F     + +  
Sbjct: 220 SGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT 279

Query: 268 LDLSENSFNSAIPPWLFS-LTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGG 326
            DLS++   + +   +FS  T L +L L  N       N F  L  L  L+LS N  LG 
Sbjct: 280 CDLSKSKIFA-LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGS 337

Query: 327 QLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGN 386
              ++F  L +L+ LDLS N++     + F G      NL+ L L +N L+         
Sbjct: 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP----NLKELALDTNQLKSVPDGIFDR 393

Query: 387 LKNLQYLRLSGNSF 400
           L +LQ + L  N +
Sbjct: 394 LTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 95.2 bits (237), Expect = 1e-20
 Identities = 61/314 (19%), Positives = 116/314 (36%), Gaps = 36/314 (11%)

Query: 582 TNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVC-NLEDLQILSIRS 640
            + + + L  N  +  L E   S +  LQ L +        I ++    L  L IL +  
Sbjct: 30  AHVNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 641 NKLSGEFPNCWYHSQMFWGI------DISNNSLTGSI--PSSFGSLRSLSVLLLSNNNLS 692
           N+           +  F G+       ++  +L G++   + F  L SL +L+L +NN+ 
Sbjct: 89  NQFLQ------LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK 142

Query: 693 GGIPCSL-QNCTGLTSIDLGGNQL---------SGSLPLWISENLSSFFMLRLRSNLLSG 742
              P S   N      +DL  N++         +     +    LSS  +  +    L  
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW 202

Query: 743 DIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGN------LSALVYGNNSEVFQQLIWRVVK 796
           +         ++  +DLS N F  ++ +   +      + +L+  N+  +         K
Sbjct: 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262

Query: 797 G--RNPEYSNIIADVNSIDLSWNNLTGQIPDEI-GNLSALHILNLSHNQLSGAIPQSLSS 853
                       + V + DLS + +   +   +  + + L  L L+ N+++     +   
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG 321

Query: 854 LASLSKLNLSFNNL 867
           L  L KLNLS N L
Sbjct: 322 LTHLLKLNLSQNFL 335

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 91.7 bits (228), Expect = 2e-19
 Identities = 65/375 (17%), Positives = 123/375 (32%), Gaps = 62/375 (16%)

Query: 536 LSSEITYLILSNNQIKGKLPRQM--NSPNLRSIDLSSNHFEGTLPL----WSTNADELFL 589
           L + + Y+ LS N I  +L         +L+ + +        +        ++   L L
Sbjct: 28  LPAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86

Query: 590 QDNRFSGPLPENIGSLMPRLQRLYLSWNQL-SGRIPSSV-CNLEDLQILSIRSNKLSGEF 647
             N+F   L     + +  L+ L L+   L    +  +    L  L++L +R N +    
Sbjct: 87  DYNQFLQ-LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145

Query: 648 PNCWYHS-QMFWGIDISNNSLTGSIPSSFGSLRSLSVLLL----------SNNNLSGGIP 696
           P  ++ + + F  +D++ N +         + +     LL          +   L     
Sbjct: 146 PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 697 CSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCN------ 750
            +    T +T++DL GN    S+     + ++   +  L  +                  
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 751 --------LQNLHIIDLSHNNFS---GAIPRCIGNLSALVYGNN------SEVFQQLIWR 793
                      +   DLS +       ++     +L  L    N         F  L   
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL--- 322

Query: 794 VVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEI-GNLSALHILNLSHNQLSGAIPQSLS 852
                          +  ++LS N L   I   +  NL  L +L+LS+N +     QS  
Sbjct: 323 -------------THLLKLNLSQNFLGS-IDSRMFENLDKLEVLDLSYNHIRALGDQSFL 368

Query: 853 SLASLSKLNLSFNNL 867
            L +L +L L  N L
Sbjct: 369 GLPNLKELALDTNQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 34/153 (22%), Positives = 62/153 (40%), Gaps = 18/153 (11%)

Query: 126 LHLKYLDTLDLSLNDFEGAEIPEY-FGQLKNLRYLNLSFSSFSGEIPPQ-LGSLSSLQYL 183
           L    + T DLS +      + +  F    +L  L L+ +  + +I       L+ L  L
Sbjct: 272 LEASGVKTCDLSKSKI--FALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKL 328

Query: 184 DLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVEL 243
           +L  +   S    +            L  L++L+L +  +  +G     +   LP+L EL
Sbjct: 329 NLSQNFLGSIDSRM---------FENLDKLEVLDLSYNHIRALGDQ---SFLGLPNLKEL 376

Query: 244 RLHYCQLQGIPLSLPFINFTSISVLDLSENSFN 276
            L   QL+ +P  + F   TS+  + L  N ++
Sbjct: 377 ALDTNQLKSVPDGI-FDRLTSLQKIWLHTNPWD 408

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  123 bits (310), Expect = 3e-29
 Identities = 68/345 (19%), Positives = 116/345 (33%), Gaps = 41/345 (11%)

Query: 122 NPSLLHLKYLDTLDLSLNDFEGAEIPEY-FGQLKNLRYLNLSFSSFSGEIPPQ-LGSLSS 179
               + L     +    +     ++P       + +  LNL+      EI         +
Sbjct: 44  GFEDITLNNQKIVTFKNSTMR--KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHT 100

Query: 180 LQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPS 239
           +Q L +  ++       +            +  L +L L    L  +           P 
Sbjct: 101 IQKLYMGFNAIRYLPPHV---------FQNVPLLTVLVLERNDLSSLPRGIFHN---TPK 148

Query: 240 LVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFF 299
           L  L +    L+ I     F   TS+  L LS N   + +   L    SL    + +N  
Sbjct: 149 LTTLSMSNNNLERIEDDT-FQATTSLQNLQLSSNRL-THVDLSLI--PSLFHANVSYNLL 204

Query: 300 TGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL-FGILRRLKSLDLSANNLNGEVHEFFDG 358
           +       A    +E LD S+N      +  +   +   L  L L  NNL          
Sbjct: 205 S-----TLAIPIAVEELDASHN-----SINVVRGPVNVELTILKLQHNNLTD-----TAW 249

Query: 359 FSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLD 418
               P  L  +DLS N LE  +      ++ L+ L +S N    ++      + +L+ LD
Sbjct: 250 LLNYP-GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLD 307

Query: 419 LSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRL 463
           LS+N +   +  +  +   L +  L  NS    L+ S    LK L
Sbjct: 308 LSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLKNL 350

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  121 bits (306), Expect = 6e-29
 Identities = 94/591 (15%), Positives = 179/591 (30%), Gaps = 107/591 (18%)

Query: 277 SAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILR 336
             I   L        +++       +   E   L   +++   N+  +      L    R
Sbjct: 17  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS-TMRKLPAALLDSFR 75

Query: 337 RLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLS 396
           +++ L+L+   +       F         ++ L +  N++    P    N+  L  L L 
Sbjct: 76  QVELLNLNDLQIEEIDTYAFAYAH----TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131

Query: 397 GNSFWGSIPSSI-GNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQES 455
            N    S+P  I  N   L  L +S N +     ++F   + L +  L  N    +   S
Sbjct: 132 RNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLS 189

Query: 456 QFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELT 515
              +L                  NVSYN      L ++ I                  + 
Sbjct: 190 LIPSLFHA---------------NVSYN-----LLSTLAI---------------PIAVE 214

Query: 516 SVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEG 575
            +   +  I+  + G    +L    T L L +N +       +N P L  +DLS N  E 
Sbjct: 215 ELDASHNSIN-VVRGPVNVEL----TILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELE- 267

Query: 576 TLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQI 635
                        +  + F           M RL+RLY+S N+L   +      +  L++
Sbjct: 268 ------------KIMYHPFVK---------MQRLERLYISNNRLV-ALNLYGQPIPTLKV 305

Query: 636 LSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGI 695
           L +  N L                           +  +      L  L L +N++    
Sbjct: 306 LDLSHNHLL-------------------------HVERNQPQFDRLENLYLDHNSIV--- 337

Query: 696 PCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSG-DIPQRLC----- 749
              L     L ++ L  N    +    +  N++   +     +      +   LC     
Sbjct: 338 TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESD 397

Query: 750 -NLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIAD 808
               +  +  ++  +    + R  G  SA    N+ +     I +           + A+
Sbjct: 398 KPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAE 457

Query: 809 VNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSK 859
           VN +      LT +   +   L  LH    ++ +        L+  +    
Sbjct: 458 VNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLN 508

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  121 bits (305), Expect = 1e-28
 Identities = 89/482 (18%), Positives = 153/482 (31%), Gaps = 56/482 (11%)

Query: 124 SLLHLKYLDTLDLSLNDFEGAEIPEY-FGQLKNLRYLNLSFSSFSGEIPPQ-LGSLSSLQ 181
            L   + ++ L+L+    E  EI  Y F     ++ L + F++    +PP    ++  L 
Sbjct: 70  LLDSFRQVELLNLNDLQIE--EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT 126

Query: 182 YLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLV 241
            L L       N     L +           L  L++    L+ +  D  QA     SL 
Sbjct: 127 VLVL-----ERND----LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA---TTSLQ 174

Query: 242 ELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTG 301
            L+L   +L  + LSL      S+   ++S N  ++     L    ++ +L    N    
Sbjct: 175 NLQLSSNRLTHVDLSL----IPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINV 225

Query: 302 HIPNEFANLKLLEVLDLSNNLDLGGQLPKL--FGILRRLKSLDLSANNLNGEVHEFFDGF 359
                   L    +L L +N      L           L  +DLS N L   ++  F   
Sbjct: 226 VRGPVNVELT---ILKLQHN-----NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277

Query: 360 SGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDL 419
                 LE L +S+N L   L      +  L+ L LS N     +  +      L  L L
Sbjct: 278 Q----RLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 331

Query: 420 SYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRL------ESFRLTTEPT 473
            +N +      +   L  L    L  N W+     + F N+ R       +  ++  +  
Sbjct: 332 DHNSIVTLKLSTHHTLKNL---TLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLE 388

Query: 474 KKFVFNVSYNWVPPFRLKSIQ----IENCQVGPSFPVWLQVQTELTSVILRNVGISDTIP 529
                  S        L+ I     +E  Q              + S+          +P
Sbjct: 389 HGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGG-VP 447

Query: 530 GDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFL 589
                +L +E+  L     Q+  +  +Q         ++ +N     LP          L
Sbjct: 448 LQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNL 507

Query: 590 QD 591
             
Sbjct: 508 NK 509

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  111 bits (280), Expect = 1e-25
 Identities = 106/641 (16%), Positives = 196/641 (30%), Gaps = 75/641 (11%)

Query: 235 NMLPSLVELRLHY-CQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFS-LTSLTKL 292
           N+    V   +H   Q Q +      I   +  ++    ++    +P  L      +  L
Sbjct: 22  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-RKLPAALLDSFRQVELL 80

Query: 293 YLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEV 352
            L            FA    ++ L +  N  +    P +F  +  L  L L  N+L+   
Sbjct: 81  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSSLP 139

Query: 353 HEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLS 412
              F         L  L +S+N+LE     +     +LQ L+LS N     +   +  + 
Sbjct: 140 RGIFHNTP----KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIP 192

Query: 413 SLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEP 472
           SL   ++SYN +      +      + + +   NS   +++    + L  L         
Sbjct: 193 SLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPVNVELTIL--------- 237

Query: 473 TKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDW 532
                  + +N      L                WL     L  V L    +   I    
Sbjct: 238 ------KLQHN-----NLTDTA------------WLLNYPGLVEVDLSYNELE-KIMYHP 273

Query: 533 FSKLSSEITYLILSNNQIKGKLPRQMNS-PNLRSIDLSSNHFEGTLPLWSTNAD---ELF 588
           F K+   +  L +SNN++   L       P L+ +DLS NH    +       D    L+
Sbjct: 274 FVKMQR-LERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 330

Query: 589 LQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFP 648
           L  N     L  +       L+ L LS N          CN       ++    +     
Sbjct: 331 LDHNSIV-TLKLST---HHTLKNLTLSHNDWD-------CNSLRALFRNVARPAVDDADQ 379

Query: 649 NCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSI 708
           +C    Q+  G+           P     L+ +++  +          CS  +       
Sbjct: 380 HCKIDYQLEHGL----CCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQS 435

Query: 709 DLGGNQLSGSLPLWISENLS-SFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGA 767
                   G +PL  +E L      LR     L+ +  Q+   LQ LH    ++      
Sbjct: 436 LSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRL 495

Query: 768 IPRCIGNLSALV--YGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPD 825
               +   S  +     + +  Q    R  + R  E      +   ++     L  Q+ +
Sbjct: 496 PKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDN 555

Query: 826 EIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNN 866
           +    + L        Q    +    +      +++   ++
Sbjct: 556 KRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRRVSHHHHH 596

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  110 bits (277), Expect = 3e-25
 Identities = 91/615 (14%), Positives = 202/615 (32%), Gaps = 97/615 (15%)

Query: 156 LRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKL 215
              +++   +       +  +L++ + +        +++    +       L     ++L
Sbjct: 29  FYDVHIDMQTQDVYFGFEDITLNNQKIVTF-----KNST----MRKLPAALLDSFRQVEL 79

Query: 216 LNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSF 275
           LNL  ++++ +            ++ +L + +  ++ +P  + F N   ++VL L  N  
Sbjct: 80  LNLNDLQIEEIDTYAFAY---AHTIQKLYMGFNAIRYLPPHV-FQNVPLLTVLVLERNDL 135

Query: 276 NSAIPPWLFS-LTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL-FG 333
           +S +P  +F     LT L +  N       + F     L+ L LS+N     +L  +   
Sbjct: 136 SS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-----RLTHVDLS 189

Query: 334 ILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYL 393
           ++  L   ++S N L+             P  +E LD S NS+   +   +     L  L
Sbjct: 190 LIPSLFHANVSYNLLS---------TLAIPIAVEELDASHNSIN-VVRGPV--NVELTIL 237

Query: 394 RLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQ 453
           +L  N+   +  + + N   L ++DLSYN           +L +              + 
Sbjct: 238 KLQHNNL--TDTAWLLNYPGLVEVDLSYN-----------ELEK--------------IM 270

Query: 454 ESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTE 513
              F+ ++RLE   +            S N     RL ++            ++ Q    
Sbjct: 271 YHPFVKMQRLERLYI------------SNN-----RLVAL-----------NLYGQPIPT 302

Query: 514 LTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHF 573
           L  + L +  +   +  +        +  L L +N I   L    +   L+++ LS N +
Sbjct: 303 LKVLDLSHNHLL-HVERNQPQ--FDRLENLYLDHNSIV-TLKLSTH-HTLKNLTLSHNDW 357

Query: 574 EGT-LPLWSTNADELFLQDNRFSGPLPENIGSLM--PRLQRLYLSWNQLSGRIPSSVCNL 630
           +   L     N     + D      +   +   +      + YL        + S V  +
Sbjct: 358 DCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKV 417

Query: 631 EDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNN 690
           +  Q     ++ ++       Y +Q        N  L   +      ++ L+   +    
Sbjct: 418 QRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQ 477

Query: 691 LSGGIPCS-LQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLC 749
           L  G+      N         G  + S +L    +            +     +   +  
Sbjct: 478 LLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQK 537

Query: 750 NLQNLHIIDLSHNNF 764
             ++L   +++    
Sbjct: 538 ETEDLEQENIALEKQ 552

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  106 bits (265), Expect = 7e-24
 Identities = 81/516 (15%), Positives = 161/516 (31%), Gaps = 51/516 (9%)

Query: 364 NNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNG 423
               Y           +  +L        + +   +           L++ + +    + 
Sbjct: 3   GQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST 62

Query: 424 MNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYN 483
           M            ++   NL     E I     F     ++   +             +N
Sbjct: 63  MRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYM------------GFN 109

Query: 484 WVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYL 543
                 ++ +           P   Q    LT ++L    +S ++P   F      +T L
Sbjct: 110 -----AIRYLP----------PHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPK-LTTL 152

Query: 544 ILSNNQIKGKLPRQM--NSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPEN 601
            +SNN ++ ++       + +L+++ LSSN           +     +  N  S  L   
Sbjct: 153 SMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST-LAIP 210

Query: 602 IGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGID 661
           I      ++ L  S N ++  +   V    +L IL ++ N L+ +      +  +   +D
Sbjct: 211 I-----AVEELDASHNSIN-VVRGPVN--VELTILKLQHNNLT-DTAWLLNYPGLVE-VD 260

Query: 662 ISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPL 721
           +S N L   +   F  ++ L  L +SNN L   +    Q    L  +DL  N L   +  
Sbjct: 261 LSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVER 318

Query: 722 WISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCI-GNLSALVY 780
                      L L  N +   +         L  + LSHN++     R +  N++    
Sbjct: 319 NQP-QFDRLENLYLDHNSIV-TLKLS--THHTLKNLTLSHNDWDCNSLRALFRNVARPAV 374

Query: 781 GNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSH 840
            +  +  +            E      D     ++  ++  ++    G  SA   +N   
Sbjct: 375 DDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQ 434

Query: 841 NQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSLPN 876
           +       Q    L    +L    N L  ++  L N
Sbjct: 435 SLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTN 470

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 55.7 bits (134), Expect = 5e-08
 Identities = 48/363 (13%), Positives = 112/363 (30%), Gaps = 58/363 (15%)

Query: 123 PSLLHLKYLDTLDLSLNDFEGAEIPEY-FGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQ 181
             LL+   L  +DLS N+ E  +I  + F +++ L  L +S +     +      + +L+
Sbjct: 248 AWLLNYPGLVEVDLSYNELE--KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLK 304

Query: 182 YLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLV 241
            LDL     S N                             L HV  +  Q       L 
Sbjct: 305 VLDL-----SHN----------------------------HLLHVERNQPQ----FDRLE 327

Query: 242 ELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFN-SAIPPWLFSLTSLTKLYLRWNFFT 300
            L L +  +     +L      ++  L LS N ++ +++     ++          +   
Sbjct: 328 NLYLDHNSIV----TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKI 383

Query: 301 GHI---------PNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGE 351
            +           ++    +LL+ + L++ ++   +          + S+   ++ +  +
Sbjct: 384 DYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQ 443

Query: 352 VHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNL 411
                 G       +  L      L  E  +    L+ L     +    +      +   
Sbjct: 444 GGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARS 503

Query: 412 S--SLRKLDLSYNGMNGTIPESFGKLSEL-VDANLLQNSWEGILQESQFMNLKRLESFRL 468
           S    +            + E+  + +E        ++  +  +   + ++ KR +   L
Sbjct: 504 SDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAEL 563

Query: 469 TTE 471
             E
Sbjct: 564 RQE 566

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.4 bits (115), Expect = 1e-05
 Identities = 41/326 (12%), Positives = 94/326 (28%), Gaps = 30/326 (9%)

Query: 124 SLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYL 183
             + ++ L+ L +S N      +  Y   +  L+ L+LS +     +         L+ L
Sbjct: 273 PFVKMQRLERLYISNNRLV--ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 329

Query: 184 DLYADSFSSNSGSLALHAQNLN-------------WLSGLSSLKLLNL-GFVKLDHVGAD 229
            L  +S  +   S     +NL                  ++   + +     K+D+    
Sbjct: 330 YLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEH 389

Query: 230 WLQAVNMLPSLVELRLHYCQLQGI--PLSLPFINFTSISVLDLSENSFNSAIPPWLFSLT 287
            L         ++  L Y  L  +   +       ++   ++  ++  +         L 
Sbjct: 390 GLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQ 449

Query: 288 SLTKLYLRWNFFT----GHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDL 343
              +L    N            +    +LL+ L    + +L        G+ R   +L+ 
Sbjct: 450 GNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNK 509

Query: 344 SANNLNGEVHEFFDGFSGRPN-------NLEYLDLSSNSLEGELPKSLGNLKNLQYLRLS 396
              +L             R           E L+  + +LE +L         L+     
Sbjct: 510 VFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSL 569

Query: 397 GNSFWGSIPSSIGNLSSLRKLDLSYN 422
                  + +        R++   ++
Sbjct: 570 KRQKVKQLEAKKNRNPDTRRVSHHHH 595

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  112 bits (283), Expect = 2e-27
 Identities = 63/276 (22%), Positives = 105/276 (38%), Gaps = 32/276 (11%)

Query: 132 DTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFS 191
             +  +        +P   G   +   L L  +            L+ L  L L     S
Sbjct: 10  TEIRCNSKGL--TSVPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSL-----S 60

Query: 192 SNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQ 251
           SN   L+          G +SLK L+L F  +  + +++L     L  L  L   +  L+
Sbjct: 61  SNG--LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG----LEQLEHLDFQHSNLK 114

Query: 252 GIPLSLPFINFTSISVLDLSENSFNSAIPPWLFS-LTSLTKLYLRWNFFTGHIPNE-FAN 309
            +     F++  ++  LD+S           +F+ L+SL  L +  N F  +   + F  
Sbjct: 115 QMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173

Query: 310 LKLLEVLDLSNNLDLGGQL----PKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNN 365
           L+ L  LDLS       QL    P  F  L  L+ L++S NN        +   +    +
Sbjct: 174 LRNLTFLDLSQC-----QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN----S 224

Query: 366 LEYLDLSSNSLEGELPKSLGNL-KNLQYLRLSGNSF 400
           L+ LD S N +     + L +   +L +L L+ N F
Sbjct: 225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  106 bits (266), Expect = 3e-25
 Identities = 65/231 (28%), Positives = 99/231 (42%), Gaps = 15/231 (6%)

Query: 242 ELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFS-LTSLTKLYLRWNFFT 300
           E+R +   L  +P  +P    +S + L+L  N   S +P  +F  LT LTKL L  N  +
Sbjct: 11  EIRCNSKGLTSVPTGIP----SSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLS 65

Query: 301 GH--IPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDG 358
                         L+ LDLS N  +   +   F  L +L+ LD   +NL  ++ EF   
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLK-QMSEF-SV 121

Query: 359 FSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSI-GNLSSLRKL 417
           F    N L YLD+S              L +L+ L+++GNSF  +    I   L +L  L
Sbjct: 122 FLSLRN-LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180

Query: 418 DLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRL 468
           DLS   +    P +F  LS L   N+  N++  +     +  L  L+    
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL-DTFPYKCLNSLQVLDY 230

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  103 bits (259), Expect = 2e-24
 Identities = 64/240 (26%), Positives = 100/240 (41%), Gaps = 13/240 (5%)

Query: 235 NMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSEN--SFNSAIPPWLFSLTSLTKL 292
            +  S   L L   +LQ +P  + F   T ++ L LS N  SF        F  TSL  L
Sbjct: 25  GIPSSATRLELESNKLQSLPHGV-FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83

Query: 293 YLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEV 352
            L +N     + + F  L+ LE LD  ++         +F  LR L  LD+S  +     
Sbjct: 84  DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142

Query: 353 HEFFDGFSGRPNNLEYLDLSSNS-LEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSI-GN 410
           +  F+G S    +LE L ++ NS  E  LP     L+NL +L LS       +  +   +
Sbjct: 143 NGIFNGLS----SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNS 197

Query: 411 LSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNL-KRLESFRLT 469
           LSSL+ L++S+N         +  L+ L   +   N      ++ +  +    L    LT
Sbjct: 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLT 256

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 97.4 bits (243), Expect = 3e-22
 Identities = 51/228 (22%), Positives = 81/228 (35%), Gaps = 15/228 (6%)

Query: 124 SLLHLKYLDTLDLSLNDFEGAEIPEY-FGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQY 182
               L  L  L LS N                +L+YL+LSF+     +      L  L++
Sbjct: 47  VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 105

Query: 183 LDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVE 242
           LD    +    S          +    L +L  L++                  L SL  
Sbjct: 106 LDFQHSNLKQMS--------EFSVFLSLRNLIYLDISHTHTRVAFNGIFNG---LSSLEV 154

Query: 243 LRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFS-LTSLTKLYLRWNFFTG 301
           L++     Q   L   F    +++ LDLS+      + P  F+ L+SL  L +  N F  
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFS 213

Query: 302 HIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLN 349
                +  L  L+VLD S N  +  +  +L      L  L+L+ N+  
Sbjct: 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 89.7 bits (223), Expect = 1e-19
 Identities = 54/287 (18%), Positives = 86/287 (29%), Gaps = 61/287 (21%)

Query: 583 NADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNK 642
           +  E+       +  +P  I        RL L  N+L          L  L  LS+ SN 
Sbjct: 8   SGTEIRCNSKGLTS-VPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG 63

Query: 643 LSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNC 702
           LS +                           S     SL  L LS N +   +  +    
Sbjct: 64  LSFKGCC----------------------SQSDFGTTSLKYLDLSFNGVIT-MSSNFLGL 100

Query: 703 TGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHN 762
             L  +D   + L       +  +L +   L +               L +L ++ ++ N
Sbjct: 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 160

Query: 763 NFSGAIPRCI-GNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTG 821
           +F       I   L  L +                               +DLS   L  
Sbjct: 161 SFQENFLPDIFTELRNLTF-------------------------------LDLSQCQLE- 188

Query: 822 QIPDEI-GNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNL 867
           Q+      +LS+L +LN+SHN            L SL  L+ S N++
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 87.4 bits (217), Expect = 6e-19
 Identities = 59/282 (20%), Positives = 98/282 (34%), Gaps = 46/282 (16%)

Query: 515 TSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQM--NSPNLRSIDLSSNH 572
           T +   + G++ ++P      + S  T L L +N+++  LP  +      L  + LSSN 
Sbjct: 10  TEIRCNSKGLT-SVPTG----IPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNG 63

Query: 573 FEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLED 632
                                  G            L+ L LS+N +   + S+   LE 
Sbjct: 64  LS-----------FKGCCSQSDFG---------TTSLKYLDLSFNGVI-TMSSNFLGLEQ 102

Query: 633 LQILSIRSNKLSGEFPNCWYHSQMFWG------IDISNNSLTGSIPSSFGSLRSLSVLLL 686
           L+ L  + + L            +F        +DIS+     +    F  L SL VL +
Sbjct: 103 LEHLDFQHSNLKQMSE-----FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157

Query: 687 SNNNLSGGI-PCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIP 745
           + N+      P        LT +DL   QL   L      +LSS  +L +  N       
Sbjct: 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDT 216

Query: 746 QRLCNLQNLHIIDLSHNNFS----GAIPRCIGNLSALVYGNN 783
                L +L ++D S N+        +     +L+ L    N
Sbjct: 217 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.8 bits (174), Expect = 3e-13
 Identities = 59/351 (16%), Positives = 112/351 (31%), Gaps = 85/351 (24%)

Query: 389 NLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSW 448
           +   +R +      S+P+ I   SS  +L+L  N +       F KL++L   +L  N  
Sbjct: 8   SGTEIRCNSKGL-TSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 449 EGI-LQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVW 507
                          L+   L            S+N      + ++         +F   
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDL------------SFN-----GVITMS-------SNF--- 97

Query: 508 LQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSID 567
                +L  +  ++  +        F  L + + YL +S+   +                
Sbjct: 98  -LGLEQLEHLDFQHSNLKQMSEFSVFLSLRN-LIYLDISHTHTR---------------V 140

Query: 568 LSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSV 627
             +  F G      ++ + L +  N F      +I + +  L  L LS  QL  ++  + 
Sbjct: 141 AFNGIFNGL-----SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTA 194

Query: 628 -CNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLL 686
             +L  LQ+L                        ++S+N+        +  L SL VL  
Sbjct: 195 FNSLSSLQVL------------------------NMSHNNFFSLDTFPYKCLNSLQVLDY 230

Query: 687 SNNNLSGGIPCSLQN-CTGLTSIDLGGNQLS-----GSLPLWISENLSSFF 731
           S N++       LQ+  + L  ++L  N  +      S   WI +      
Sbjct: 231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV 281

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  109 bits (275), Expect = 3e-26
 Identities = 58/283 (20%), Positives = 105/283 (37%), Gaps = 32/283 (11%)

Query: 124 SLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYL 183
              +LK L TL L  N       P  F  L  L  L LS +    E+P ++    +LQ L
Sbjct: 71  DFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQEL 126

Query: 184 DLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGF--VKLDHVGADWLQAVNMLPSLV 241
            ++ +  +       +     +  +GL+ + ++ LG   +K   +     Q    +  L 
Sbjct: 127 RVHENEITK------VRK---SVFNGLNQMIVVELGTNPLKSSGIENGAFQG---MKKLS 174

Query: 242 ELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFS-LTSLTKLYLRWNFFT 300
            +R+    +  IP  L      S++ L L  N   + +       L +L KL L +N  +
Sbjct: 175 YIRIADTNITTIPQGL----PPSLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSIS 229

Query: 301 GHIPNEFANLKLLEVLDLSNN-LDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGF 359
                  AN   L  L L+NN L    ++P      + ++ + L  NN++      F   
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLV---KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286

Query: 360 SGRPN--NLEYLDLSSNSLEGEL--PKSLGNLKNLQYLRLSGN 398
                  +   + L SN ++     P +   +     ++L   
Sbjct: 287 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  105 bits (263), Expect = 1e-24
 Identities = 74/345 (21%), Positives = 125/345 (36%), Gaps = 59/345 (17%)

Query: 239 SLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFS-LTSLTKLYLRWN 297
            L  ++     L+ +P  LP       ++LDL  N   + I    F  L +L  L L  N
Sbjct: 32  HLRVVQCSDLGLEKVPKDLP----PDTALLDLQNNKI-TEIKDGDFKNLKNLHTLILINN 86

Query: 298 FFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL-FGILRRLKSLDLSANNLNGEVHEFF 356
             +   P  FA L  LE L LS N     QL +L   + + L+ L +  N +       F
Sbjct: 87  KISKISPGAFAPLVKLERLYLSKN-----QLKELPEKMPKTLQELRVHENEITKVRKSVF 141

Query: 357 DGFSGRPNNLEYLDLSSNSLEGEL--PKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSL 414
           +G     N +  ++L +N L+       +   +K L Y+R++  +   +IP   G   SL
Sbjct: 142 NGL----NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQ--GLPPSL 194

Query: 415 RKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTK 474
            +L L  N +      S   L+ L    L  NS   +       N   L    L      
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV-DNGSLANTPHLRELHL------ 247

Query: 475 KFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRN-----VGISDTIP 529
                 + N     +L  +           P  L     +  V L N     +G +D  P
Sbjct: 248 ------NNN-----KLVKV-----------PGGLADHKYIQVVYLHNNNISAIGSNDFCP 285

Query: 530 GDWFSKLSSEITYLILSNNQIK-GKLPRQM--NSPNLRSIDLSSN 571
             + +K +S  + + L +N ++  ++            ++ L + 
Sbjct: 286 PGYNTKKAS-YSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 96.6 bits (241), Expect = 9e-22
 Identities = 65/366 (17%), Positives = 132/366 (36%), Gaps = 81/366 (22%)

Query: 513 ELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQM--NSPNLRSIDLSS 570
            L  V   ++G+   +P D    L  +   L L NN+I  ++      N  NL ++ L +
Sbjct: 32  HLRVVQCSDLGLE-KVPKD----LPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILIN 85

Query: 571 NHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNL 630
           N                 +    F+          + +L+RLYLS NQL   +P  +   
Sbjct: 86  NKIS-------------KISPGAFAP---------LVKLERLYLSKNQLK-ELPEKM--P 120

Query: 631 EDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSI--PSSFGSLRSLSVLLLSN 688
           + LQ L +  N+++    + +        +++  N L  S     +F  ++ LS + +++
Sbjct: 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180

Query: 689 NNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQR- 747
            N++  IP  L     LT + L GN+++  +     + L++   L L  N +S  +    
Sbjct: 181 TNITT-IPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSIS-AVDNGS 235

Query: 748 LCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIA 807
           L N  +L  + L++N     +P  + +   +                             
Sbjct: 236 LANTPHLRELHLNNNKLV-KVPGGLADHKYIQV--------------------------- 267

Query: 808 DVNSIDLSWNNLTG------QIPDEIGNLSALHILNLSHNQLSGAI--PQSLSSLASLSK 859
               + L  NN++         P      ++   ++L  N +      P +   +   + 
Sbjct: 268 ----VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323

Query: 860 LNLSFN 865
           + L   
Sbjct: 324 VQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 90.1 bits (224), Expect = 1e-19
 Identities = 70/340 (20%), Positives = 120/340 (35%), Gaps = 74/340 (21%)

Query: 363 PNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSI-GNLSSLRKLDLSY 421
           P +   LDL +N +         NLKNL  L L  N     I       L  L +L LS 
Sbjct: 51  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI-SKISPGAFAPLVKLERLYLSK 109

Query: 422 NGMNGTIPESFGKLSEL-VDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNV 480
           N +     +    L EL V  N +       +++S F  L ++    L            
Sbjct: 110 NQLKELPEKMPKTLQELRVHENEITK-----VRKSVFNGLNQMIVVEL------------ 152

Query: 481 SYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEI 540
             N      LKS  IE            Q   +L+ + + +  I+ TIP      L    
Sbjct: 153 GTN-----PLKSSGIE--------NGAFQGMKKLSYIRIADTNIT-TIPQGLPPSL---- 194

Query: 541 TYLILSNNQIKGKLPRQM--NSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPL 598
           T L L  N+I  K+         NL  + LS N                 + +   +   
Sbjct: 195 TELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISA-------------VDNGSLAN-- 238

Query: 599 PENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFW 658
                   P L+ L+L+ N+L  ++P  + + + +Q++ + +N +S    +  +    + 
Sbjct: 239 -------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYN 289

Query: 659 -------GIDISNNSLTGSI--PSSFGSLRSLSVLLLSNN 689
                  G+ + +N +      PS+F  +   + + L N 
Sbjct: 290 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 87.4 bits (217), Expect = 9e-19
 Identities = 49/271 (18%), Positives = 100/271 (36%), Gaps = 42/271 (15%)

Query: 598 LPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMF 657
           +P+++    P    L L  N+++        NL++L  L + +NK+S   P  +      
Sbjct: 46  VPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102

Query: 658 WGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQL-S 716
             + +S N L   +P      ++L  L +  N ++            +  ++LG N L S
Sbjct: 103 ERLYLSKNQLK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159

Query: 717 GSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLS 776
             +     + +     +R+    ++  IPQ L    +L  + L  N  +      +  L+
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLN 216

Query: 777 ALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHIL 836
            L                                 + LS+N+++      + N   L  L
Sbjct: 217 NL-------------------------------AKLGLSFNSISAVDNGSLANTPHLREL 245

Query: 837 NLSHNQLSGAIPQSLSSLASLSKLNLSFNNL 867
           +L++N+L   +P  L+    +  + L  NN+
Sbjct: 246 HLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 76.6 bits (189), Expect = 4e-15
 Identities = 50/227 (22%), Positives = 86/227 (37%), Gaps = 39/227 (17%)

Query: 660 IDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSL 719
           +D+ NN +T      F +L++L  L+L NN +S   P +      L  + L  NQL   L
Sbjct: 57  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115

Query: 720 PLWISENLSSFFMLRLRSNLLSGDIPQR-LCNLQNLHIIDLSHNNFSGAI--PRCIGNLS 776
           P  + + L     LR+  N ++  + +     L  + +++L  N    +         + 
Sbjct: 116 PEKMPKTLQE---LRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171

Query: 777 ALVY----GNN-----SEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEI 827
            L Y      N       +   L                     + L  N +T ++    
Sbjct: 172 KLSYIRIADTNITTIPQGLPPSLT-------------------ELHLDGNKIT-KVDAAS 211

Query: 828 -GNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPS 873
              L+ L  L LS N +S     SL++   L +L+L+ N L  K+P 
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG 257

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 66.9 bits (164), Expect = 5e-12
 Identities = 45/219 (20%), Positives = 86/219 (39%), Gaps = 37/219 (16%)

Query: 660 IDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSL 719
           +  S+  L   +P         ++L L NN ++       +N   L ++ L  N++S  +
Sbjct: 36  VQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KI 91

Query: 720 PLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALV 779
                  L     L L  N L  ++P+++   + L  + +  N  +         L+ ++
Sbjct: 92  SPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMI 148

Query: 780 Y---GNN--------SEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIG 828
               G N        +  FQ +                  ++ I ++  N+T  IP   G
Sbjct: 149 VVELGTNPLKSSGIENGAFQGMK----------------KLSYIRIADTNIT-TIPQ--G 189

Query: 829 NLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNL 867
              +L  L+L  N+++     SL  L +L+KL LSFN++
Sbjct: 190 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  113 bits (283), Expect = 4e-26
 Identities = 83/525 (15%), Positives = 162/525 (30%), Gaps = 80/525 (15%)

Query: 359 FSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSI-GNLSSLRKL 417
               P   + L LS NS+       +  L  L+ LRLS N    S+   +      L  L
Sbjct: 47  PKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYL 105

Query: 418 DLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFV 477
           D+S+N +   I      ++ L   +L  N ++ +    +F NL +L    L+    ++  
Sbjct: 106 DVSHNRL-QNIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD 162

Query: 478 FNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLS 537
                +      L  +   + + G          T +  ++     +         + L 
Sbjct: 163 LLPVAHLHLSCILLDLVSYHIKGGE-TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALG 221

Query: 538 S----EITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNH------FEGTLPLWSTNADEL 587
                 I     +  ++   L      P L ++ L           +     W    + L
Sbjct: 222 HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281

Query: 588 FLQDNRFSGPLPENIGSL----MPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKL 643
            + +   +  +     +     +  L   ++          +      ++ I  +  +  
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341

Query: 644 SGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCT 703
                 C      F  ++ + N  T S+     +L+ L  L+L  N L            
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN-FFKVALMTK 400

Query: 704 GLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNL-QNLHIIDLSHN 762
            ++S++     L                      N L+     R C   +++ +++LS N
Sbjct: 401 NMSSLETLDVSL----------------------NSLNSHAYDRTCAWAESILVLNLSSN 438

Query: 763 NFSGAIPRCI-GNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTG 821
             +G++ RC+   +  L                                  DL  N +  
Sbjct: 439 MLTGSVFRCLPPKVKVL----------------------------------DLHNNRIM- 463

Query: 822 QIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNN 866
            IP ++ +L AL  LN++ NQL          L SL  + L  N 
Sbjct: 464 SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  104 bits (260), Expect = 3e-23
 Identities = 66/331 (19%), Positives = 124/331 (37%), Gaps = 16/331 (4%)

Query: 120 KINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSS 179
             N ++LHL       L       +       QL N++  + +          +L    +
Sbjct: 193 IPNTTVLHL-VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLM-TFLSELTRGPT 250

Query: 180 LQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPS 239
           L  + L     +      ++      W   +  L + NL   +      ++  +   L S
Sbjct: 251 LLNVTLQHIETTWKC---SVKLFQFFWPRPVEYLNIYNLTITERI-DREEFTYSETALKS 306

Query: 240 LVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFF 299
           L+   +             +  F  +++  LS +           S +S T L    N F
Sbjct: 307 LMIEHVKNQVFLFSK-EALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF 365

Query: 300 TGHIPNEFANLKLLEVLDLSNN-LDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDG 358
           T  +    + LK L+ L L  N L       K+  + + + SL+    +LN      +D 
Sbjct: 366 TDSVFQGCSTLKRLQTLILQRNGLK---NFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422

Query: 359 FSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLD 418
                 ++  L+LSSN L G + + L     ++ L L  N    SIP  + +L +L++L+
Sbjct: 423 TCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRI-MSIPKDVTHLQALQELN 479

Query: 419 LSYNGMNGTIPE-SFGKLSELVDANLLQNSW 448
           ++ N +  ++P+  F +L+ L    L  N W
Sbjct: 480 VASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  101 bits (253), Expect = 2e-22
 Identities = 86/495 (17%), Positives = 159/495 (32%), Gaps = 69/495 (13%)

Query: 207 LSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSIS 266
           +S LS L++L L   ++  +             L  L + + +LQ    ++      S+ 
Sbjct: 72  ISFLSELRVLRLSHNRIRSLDFH---VFLFNQDLEYLDVSHNRLQ----NISCCPMASLR 124

Query: 267 VLDLSENSFNSAIPPWLFS-LTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLG 325
            LDLS N F+       F  LT LT L L    F        A+L L  +L    +  + 
Sbjct: 125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIK 184

Query: 326 GQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPN-NLEYLDLSSNSLEGELPKSL 384
           G   +   I      L L  +  +    +     +   +  L  + L+  + +  +    
Sbjct: 185 GGETESLQIP-NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS 243

Query: 385 GNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLL 444
              +    L ++      +   S+          + Y  +                   +
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN---------------LTI 288

Query: 445 QNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSF 504
               +          LK L    +  +        + Y+      +K + I +       
Sbjct: 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEAL-YSVFAEMNIKMLSISDTPFIHMV 347

Query: 505 PVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQ----MNS 560
                  +  T +       +D++     S L   +  LIL  N +K    +      N 
Sbjct: 348 C--PPSPSSFTFLNFTQNVFTDSVFQ-GCSTLKR-LQTLILQRNGLK-NFFKVALMTKNM 402

Query: 561 PNLRSIDLSSNHFE----GTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSW 616
            +L ++D+S N            W+ +   L L  N  +G +      L P+++ L L  
Sbjct: 403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR---CLPPKVKVLDLHN 459

Query: 617 NQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIP-SSF 675
           N++   IP  V +L+ LQ L++ SN+L                          S+P   F
Sbjct: 460 NRIM-SIPKDVTHLQALQELNVASNQLK-------------------------SVPDGVF 493

Query: 676 GSLRSLSVLLLSNNN 690
             L SL  + L +N 
Sbjct: 494 DRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 87.6 bits (217), Expect = 5e-18
 Identities = 74/455 (16%), Positives = 152/455 (33%), Gaps = 55/455 (12%)

Query: 127 HLKYLDTLDLSLNDFEGAEIPE-YFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDL 185
            L  L  L LS N      +    F   ++L YL++S +     I      ++SL++LDL
Sbjct: 74  FLSELRVLRLSHNRIR--SLDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRHLDL 128

Query: 186 YADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRL 245
             + F      L +  +       L+ L  L L   K   +    +  +++   L++L  
Sbjct: 129 SFNDFD----VLPVCKE----FGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVS 180

Query: 246 HYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGH--- 302
           ++ +  G   SL   N T + ++    + F+  +   + +L  L    ++ N        
Sbjct: 181 YHIK-GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLM 239

Query: 303 -IPNEFANLKLLEVLDLSNNLDLGGQLPKLFGIL--RRLKSLDLSANNLNGEV-HEFFDG 358
              +E      L  + L +         KLF     R ++ L++    +   +  E F  
Sbjct: 240 TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTY 299

Query: 359 FSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLD 418
                 +L    + +                +    LS +           + SS   L+
Sbjct: 300 SETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLN 359

Query: 419 LSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLES-FRLTTEPTKKFV 477
            + N    ++ +    L  L    L +N             LK       +T   +    
Sbjct: 360 FTQNVFTDSVFQGCSTLKRLQTLILQRN------------GLKNFFKVALMTKNMSSLET 407

Query: 478 FNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLS 537
            +VS N +                  +         +  + L +  ++ ++    F  L 
Sbjct: 408 LDVSLNSLNSHA--------------YDRTCAWAESILVLNLSSNMLTGSV----FRCLP 449

Query: 538 SEITYLILSNNQIKGKLPRQMNS-PNLRSIDLSSN 571
            ++  L L NN+I   +P+ +     L+ ++++SN
Sbjct: 450 PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASN 483

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 87.6 bits (217), Expect = 5e-18
 Identities = 76/457 (16%), Positives = 141/457 (30%), Gaps = 55/457 (12%)

Query: 127 HLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSF-SGEIPPQLGSLSSLQYLDL 185
             + L+ LD+S N  +   I      + +LR+L+LSF+ F    +  + G+L+ L +L L
Sbjct: 98  FNQDLEYLDVSHNRLQ--NIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGL 153

Query: 186 YADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRL 245
            A  F         H      L  L S  +       L       L           L  
Sbjct: 154 SAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLH----------LVF 203

Query: 246 HYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPN 305
           H   L  + +++       + + ++  N  N        S  +     L           
Sbjct: 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263

Query: 306 E-----FANLKLLEVLDLS-NNLDLGGQLPKLFGILRRLKSLDLSANNL-NGEVHEFFDG 358
           +     F       V  L+  NL +  ++ +            L   ++ N       + 
Sbjct: 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEA 323

Query: 359 FSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLD 418
                  +    LS +           +  +  +L  + N F  S+      L  L+ L 
Sbjct: 324 LYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLI 383

Query: 419 LSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVF 478
           L  NG+     +       +     L              +L      R         V 
Sbjct: 384 LQRNGLK-NFFKVALMTKNMSSLETLDV---------SLNSLNSHAYDRTCAWAESILVL 433

Query: 479 NVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSS 538
           N+S N           +          V+  +  ++  + L N  I  +IP D  + L +
Sbjct: 434 NLSSN----------MLTGS-------VFRCLPPKVKVLDLHNNRIM-SIPKD-VTHLQA 474

Query: 539 EITYLILSNNQIKGKLPRQM--NSPNLRSIDLSSNHF 573
            +  L +++NQ+K  +P  +     +L+ I L  N +
Sbjct: 475 -LQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 73.4 bits (180), Expect = 1e-13
 Identities = 60/347 (17%), Positives = 114/347 (32%), Gaps = 22/347 (6%)

Query: 536 LSSEITYLILSNNQIKGKLPRQM--NSPNLRSIDLSSNHFEGTLPLWS----TNADELFL 589
           L      L LS N I  +L          LR + LS N    +L         + + L +
Sbjct: 50  LPPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDV 107

Query: 590 QDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVC--NLEDLQILSIRSNKL-SGE 646
             NR    +      +   L+ L LS+N     +P      NL  L  L + + K    +
Sbjct: 108 SHNRLQN-IS--CCPM-ASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLD 162

Query: 647 FPNCWYHSQMFWGIDISNNSLTGSIPSSFGSL--RSLSVLLLSNNNLSGGIPCSLQNCTG 704
                +       +D+ +  + G    S        L ++   N+  S  +  S+     
Sbjct: 163 LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGH 222

Query: 705 LTSIDLGGNQLS-GSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNN 763
           L   ++  N  +   L  ++SE      +L +    +       +   Q      + + N
Sbjct: 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282

Query: 764 FSGAIPRCIGNLSALVYGNNS---EVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLT 820
                     +     Y   +    + + +  +V         ++ A++N   LS ++  
Sbjct: 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP 342

Query: 821 GQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNL 867
                   + S+   LN + N  + ++ Q  S+L  L  L L  N L
Sbjct: 343 FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.2 bits (99), Expect = 8e-04
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 803 SNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSL-SSLASLSKLN 861
            ++     ++ LS N+++     +I  LS L +L LSHN++  ++   +      L  L+
Sbjct: 48  KDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLD 106

Query: 862 LSFNNL 867
           +S N L
Sbjct: 107 VSHNRL 112

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  110 bits (277), Expect = 8e-26
 Identities = 73/237 (30%), Positives = 98/237 (41%), Gaps = 12/237 (5%)

Query: 238 PSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFS-LTSLTKLYLRW 296
            +   L LH  Q+Q I     F +   + +L LS N     I    F+ L +L  L L  
Sbjct: 64  TNTRLLNLHENQIQIIK-VNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFD 121

Query: 297 NFFTGHIPNE-FANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEF 355
           N  T  IPN  F  L  L+ L L NN  +       F  +  L+ LDL        + E 
Sbjct: 122 NRLT-TIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISE- 178

Query: 356 FDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLR 415
              F G  N L YL+L+  +L  E+P +L  L  L  L LSGN      P S   L  L+
Sbjct: 179 -GAFEGLSN-LRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234

Query: 416 KLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEP 472
           KL +  + +      +F  L  LV+ NL  N+   +L    F  L  LE   L   P
Sbjct: 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNP 290

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  108 bits (272), Expect = 4e-25
 Identities = 63/240 (26%), Positives = 104/240 (43%), Gaps = 14/240 (5%)

Query: 211 SSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDL 270
           ++ +LLNL   ++  +  +  +    L  L  L+L    ++ I +   F    +++ L+L
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKH---LRHLEILQLSRNHIRTIEIGA-FNGLANLNTLEL 119

Query: 271 SENSFNSAIPPWLFS-LTSLTKLYLRWNFFTGHIPNE-FANLKLLEVLDLSNNLDLGGQL 328
            +N   + IP   F  L+ L +L+LR N     IP+  F  +  L  LDL     L    
Sbjct: 120 FDNRL-TTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYIS 177

Query: 329 PKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLK 388
              F  L  L+ L+L+  NL  E+             L+ LDLS N L    P S   L 
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLR-EIPNL-----TPLIKLDELDLSGNHLSAIRPGSFQGLM 231

Query: 389 NLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSW 448
           +LQ L +  +       ++  NL SL +++L++N +     + F  L  L   +L  N W
Sbjct: 232 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  106 bits (267), Expect = 1e-24
 Identities = 63/253 (24%), Positives = 93/253 (36%), Gaps = 33/253 (13%)

Query: 155 NLRYLNLSFSSFSGEIPP-QLGSLSSLQYLDLYADSFSSNS-GSLALHAQNLNWLSGLSS 212
           N R LNL  +     I       L  L+ L L     S N   ++ + A      +GL++
Sbjct: 65  NTRLLNLHENQIQ-IIKVNSFKHLRHLEILQL-----SRNHIRTIEIGA-----FNGLAN 113

Query: 213 LKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSE 272
           L  L L   +L  +          L  L EL L    ++ IP    F    S+  LDL E
Sbjct: 114 LNTLELFDNRLTTIPNGAFVY---LSKLKELWLRNNPIESIPSYA-FNRIPSLRRLDLGE 169

Query: 273 NSFNSAIPPWLFS-LTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL 331
               S I    F  L++L  L L        IP     L  L+ LDLS N      L  +
Sbjct: 170 LKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGN-----HLSAI 222

Query: 332 ----FGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNL 387
               F  L  L+ L +  + +       FD       +L  ++L+ N+L          L
Sbjct: 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ----SLVEINLAHNNLTLLPHDLFTPL 278

Query: 388 KNLQYLRLSGNSF 400
            +L+ + L  N +
Sbjct: 279 HHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 93.3 bits (232), Expect = 4e-20
 Identities = 66/234 (28%), Positives = 97/234 (41%), Gaps = 32/234 (13%)

Query: 124 SLLHLKYLDTLDLSLNDFEGAEIPEY-FGQLKNLRYLNLSFSSFSGEIPPQ-LGSLSSLQ 181
           S  HL++L+ L LS N      I    F  L NL  L L  +  +  IP      LS L+
Sbjct: 83  SFKHLRHLEILQLSRNHI--RTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLK 139

Query: 182 YLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFV-KLDHVGADWLQAVNMLPSL 240
            L L      +N     + +      + + SL+ L+LG + +L ++     +    L +L
Sbjct: 140 ELWL-----RNNP----IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG---LSNL 187

Query: 241 VELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFS-LTSLTKLYLRWNFF 299
             L L  C L+ IP          +  LDLS N   SAI P  F  L  L KL++  +  
Sbjct: 188 RYLNLAMCNLREIP---NLTPLIKLDELDLSGNHL-SAIRPGSFQGLMHLQKLWMIQSQI 243

Query: 300 TGHIPNEFANLKLLEVLDLSNNLDLGGQL----PKLFGILRRLKSLDLSANNLN 349
                N F NL+ L  ++L++N      L      LF  L  L+ + L  N  N
Sbjct: 244 QVIERNAFDNLQSLVEINLAHN-----NLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 90.2 bits (224), Expect = 4e-19
 Identities = 54/240 (22%), Positives = 97/240 (40%), Gaps = 24/240 (10%)

Query: 660 IDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSL 719
           +++  N +     +SF  LR L +L LS N++      +      L +++L  N+L+ ++
Sbjct: 69  LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TI 127

Query: 720 PLWISENLSSFFMLRLRSNLLSGDIPQRL-CNLQNLHIIDLSHNNFSGAIP----RCIGN 774
           P      LS    L LR+N +   IP      + +L  +DL        I       + N
Sbjct: 128 PNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186

Query: 775 LSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALH 834
           L  L     +      +  +     P  + +I  ++ +DLS N+L+   P     L  L 
Sbjct: 187 LRYLNLAMCN------LREI-----PNLTPLIK-LDELDLSGNHLSAIRPGSFQGLMHLQ 234

Query: 835 ILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNL----AGKIPSLPNFNDPSIYEGNPLLC 890
            L +  +Q+      +  +L SL ++NL+ NNL          L +     ++  NP  C
Sbjct: 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH-HNPWNC 293

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.0 bits (221), Expect = 9e-19
 Identities = 63/270 (23%), Positives = 101/270 (37%), Gaps = 36/270 (13%)

Query: 511 QTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQ-MNSPNLRSIDLS 569
             + + VI     +   +P      +S+    L L  NQI+        +  +L  + LS
Sbjct: 42  SNQFSKVICVRKNLR-EVPDG----ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLS 96

Query: 570 SNH--------FEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSG 621
            NH        F G       N + L L DNR +  +P      + +L+ L+L  N +  
Sbjct: 97  RNHIRTIEIGAFNGL-----ANLNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNNPIE- 149

Query: 622 RIPSSV-CNLEDLQILSIRSNKLSGEFPNCWYHSQMFWG------IDISNNSLTGSIPSS 674
            IPS     +  L+ L +   K              F G      ++++  +L   IP +
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISE-----GAFEGLSNLRYLNLAMCNLR-EIP-N 202

Query: 675 FGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLR 734
              L  L  L LS N+LS   P S Q    L  + +  +Q+   +     +NL S   + 
Sbjct: 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEIN 261

Query: 735 LRSNLLSGDIPQRLCNLQNLHIIDLSHNNF 764
           L  N L+         L +L  I L HN +
Sbjct: 262 LAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 87.5 bits (217), Expect = 3e-18
 Identities = 61/269 (22%), Positives = 97/269 (36%), Gaps = 49/269 (18%)

Query: 607 PRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGI------ 660
              + L L  NQ+     +S  +L  L+IL +  N +             F G+      
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT------IEIGAFNGLANLNTL 117

Query: 661 DISNNSLTGSIPS-SFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGG-NQLSGS 718
           ++ +N LT +IP+ +F  L  L  L L NN +      +      L  +DLG   +LS  
Sbjct: 118 ELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS-Y 175

Query: 719 LPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSAL 778
           +     E LS+   L L    L  +IP  L  L  L  +DLS N+ S   P     L  L
Sbjct: 176 ISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHL 233

Query: 779 VYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNL 838
                                            + +  + +     +   NL +L  +NL
Sbjct: 234 -------------------------------QKLWMIQSQIQVIERNAFDNLQSLVEINL 262

Query: 839 SHNQLSGAIPQSLSSLASLSKLNLSFNNL 867
           +HN L+       + L  L +++L  N  
Sbjct: 263 AHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 17/65 (26%), Positives = 28/65 (43%)

Query: 803 SNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNL 862
             I  +   ++L  N +     +   +L  L IL LS N +      + + LA+L+ L L
Sbjct: 60  DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119

Query: 863 SFNNL 867
             N L
Sbjct: 120 FDNRL 124

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  107 bits (269), Expect = 8e-26
 Identities = 65/225 (28%), Positives = 91/225 (40%), Gaps = 11/225 (4%)

Query: 249 QLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFS-LTSLTKLYLRWNFFTGHIPNEF 307
            LQ +P+ +P     +   + L  N  +  +P   F    +LT L+L  N         F
Sbjct: 22  GLQAVPVGIP----AASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAF 76

Query: 308 ANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLE 367
             L LLE LDLS+N  L    P  F  L RL +L L    L       F G +     L+
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA----ALQ 132

Query: 368 YLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGT 427
           YL L  N+L+     +  +L NL +L L GN        +   L SL +L L  N +   
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 428 IPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEP 472
            P +F  L  L+   L  N+    L       L+ L+  RL   P
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNP 236

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 56/248 (22%), Positives = 89/248 (35%), Gaps = 45/248 (18%)

Query: 155 NLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLK 214
             + + L  +  S        +  +L  L L+++  +                +GL+ L+
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA---------AAFTGLALLE 83

Query: 215 LLNLGF-VKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSEN 273
            L+L    +L  V          L  L  L L  C LQ +   L F    ++  L L +N
Sbjct: 84  QLDLSDNAQLRSVDPATFHG---LGRLHTLHLDRCGLQELGPGL-FRGLAALQYLYLQDN 139

Query: 274 SFNSAIPPWLFS-LTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLF 332
           +   A+P   F  L +LT L+L  N  +      F  L  L+ L L  N           
Sbjct: 140 AL-QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN----------- 187

Query: 333 GILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQY 392
               R+  +   A             F      L  L L +N+L     ++L  L+ LQY
Sbjct: 188 ----RVAHVHPHA-------------FRDLGR-LMTLYLFANNLSALPTEALAPLRALQY 229

Query: 393 LRLSGNSF 400
           LRL+ N +
Sbjct: 230 LRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 83.9 bits (208), Expect = 7e-18
 Identities = 46/209 (22%), Positives = 77/209 (36%), Gaps = 9/209 (4%)

Query: 536 LSSEITYLILSNNQIKGKLPRQM--NSPNLRSIDLSSNHFEGTLPLW---STNADELFLQ 590
           + +    + L  N+I   +P        NL  + L SN                ++L L 
Sbjct: 30  IPAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 591 DNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSV-CNLEDLQILSIRSNKLSGEFPN 649
           DN     +       + RL  L+L    L   +   +   L  LQ L ++ N L     +
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDD 147

Query: 650 CWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSID 709
            +        + +  N ++     +F  L SL  LLL  N ++   P + ++   L ++ 
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 710 LGGNQLSGSLPLWISENLSSFFMLRLRSN 738
           L  N LS +LP      L +   LRL  N
Sbjct: 208 LFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.3 bits (204), Expect = 3e-17
 Identities = 51/201 (25%), Positives = 73/201 (36%), Gaps = 19/201 (9%)

Query: 124 SLLHLKYLDTLDLSLNDFEGAEIPEY-FGQLKNLRYLNLSFSSFSGEIPPQ-LGSLSSLQ 181
           S    + L  L L  N    A I    F  L  L  L+LS ++    + P     L  L 
Sbjct: 51  SFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108

Query: 182 YLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLV 241
            L L             L         GL++L+ L L    L  +  D  +    L +L 
Sbjct: 109 TLHLDRCGLQE------LGP---GLFRGLAALQYLYLQDNALQALPDDTFRD---LGNLT 156

Query: 242 ELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFS-LTSLTKLYLRWNFFT 300
            L LH  ++  +P    F    S+  L L +N     + P  F  L  L  LYL  N  +
Sbjct: 157 HLFLHGNRISSVPERA-FRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNLS 214

Query: 301 GHIPNEFANLKLLEVLDLSNN 321
                  A L+ L+ L L++N
Sbjct: 215 ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 74.6 bits (184), Expect = 1e-14
 Identities = 45/236 (19%), Positives = 72/236 (30%), Gaps = 38/236 (16%)

Query: 660 IDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSL 719
           I +  N ++    +SF + R+L++L L +N L+     +      L  +DL  N    S+
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96

Query: 720 PLWISENLSSFFMLRLRSNLLSGDIPQR-LCNLQNLHIIDLSHNNFSGAIPRCIGNLSAL 778
                  L     L L    L  ++       L  L  + L  N           +L  L
Sbjct: 97  DPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 155

Query: 779 VYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNL 838
                      L                       L  N ++         L +L  L L
Sbjct: 156 ---------THL----------------------FLHGNRISSVPERAFRGLHSLDRLLL 184

Query: 839 SHNQLSGAIPQSLSSLASLSKLNLSFNNL----AGKIPSLPNFNDPSIYEGNPLLC 890
             N+++   P +   L  L  L L  NNL       +  L       +   NP +C
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN-DNPWVC 239

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 36/152 (23%), Positives = 55/152 (36%), Gaps = 18/152 (11%)

Query: 127 HLKYLDTLDLSLNDFEGAEIPEY-FGQLKNLRYLNLSFSSFSGEIPPQ-LGSLSSLQYLD 184
            L  L TL L     +  E+    F  L  L+YL L  ++    +P      L +L +L 
Sbjct: 103 GLGRLHTLHLDRCGLQ--ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLF 159

Query: 185 LYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELR 244
           L       N     + +       GL SL  L L   ++ HV      A   L  L+ L 
Sbjct: 160 L-----HGNR----ISSVPERAFRGLHSLDRLLLHQNRVAHVHPH---AFRDLGRLMTLY 207

Query: 245 LHYCQLQGIPLSLPFINFTSISVLDLSENSFN 276
           L    L  +P         ++  L L++N + 
Sbjct: 208 LFANNLSALPTEA-LAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 18/71 (25%), Positives = 26/71 (36%)

Query: 803 SNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNL 862
             I A    I L  N ++            L IL L  N L+     + + LA L +L+L
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 863 SFNNLAGKIPS 873
           S N     +  
Sbjct: 88  SDNAQLRSVDP 98

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  110 bits (276), Expect = 1e-25
 Identities = 71/240 (29%), Positives = 103/240 (42%), Gaps = 12/240 (5%)

Query: 235 NMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFS-LTSLTKLY 293
            +  +   L L    +Q I  +  F +   + VL L  NS    I    F+ L SL  L 
Sbjct: 72  GIPSNTRYLNLMENNIQMIQ-ADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLE 129

Query: 294 LRWNFFTGHIPNE-FANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEV 352
           L  N+ T  IP+  F  L  L  L L NN  +       F  +  L  LDL        +
Sbjct: 130 LFDNWLT-VIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYI 187

Query: 353 HEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLS 412
            E    F G  N L+YL+L   +++ ++P +L  L  L+ L +SGN F    P S   LS
Sbjct: 188 SE--GAFEGLFN-LKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLS 242

Query: 413 SLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEP 472
           SL+KL +  + ++     +F  L+ LV+ NL  N+    L    F  L+ L    L   P
Sbjct: 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHLHHNP 301

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  109 bits (274), Expect = 2e-25
 Identities = 63/240 (26%), Positives = 104/240 (43%), Gaps = 14/240 (5%)

Query: 211 SSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDL 270
           S+ + LNL    +  + AD  +    L  L  L+L    ++ I +   F    S++ L+L
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRH---LHHLEVLQLGRNSIRQIEVGA-FNGLASLNTLEL 130

Query: 271 SENSFNSAIPPWLFS-LTSLTKLYLRWNFFTGHIPNE-FANLKLLEVLDLSNNLDLGGQL 328
            +N   + IP   F  L+ L +L+LR N     IP+  F  +  L  LDL     L    
Sbjct: 131 FDNWL-TVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYIS 188

Query: 329 PKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLK 388
              F  L  LK L+L   N+  ++             LE L++S N      P S   L 
Sbjct: 189 EGAFEGLFNLKYLNLGMCNIK-DMPNL-----TPLVGLEELEMSGNHFPEIRPGSFHGLS 242

Query: 389 NLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSW 448
           +L+ L +  +       ++   L+SL +L+L++N ++    + F  L  LV+ +L  N W
Sbjct: 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  108 bits (272), Expect = 4e-25
 Identities = 65/249 (26%), Positives = 94/249 (37%), Gaps = 25/249 (10%)

Query: 155 NLRYLNLSFSSFSGEIPP-QLGSLSSLQYLDLYADSFSSNS-GSLALHAQNLNWLSGLSS 212
           N RYLNL  ++    I       L  L+ L L       NS   + + A      +GL+S
Sbjct: 76  NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQL-----GRNSIRQIEVGA-----FNGLAS 124

Query: 213 LKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSE 272
           L  L L    L  + +   +    L  L EL L    ++ IP    F    S+  LDL E
Sbjct: 125 LNTLELFDNWLTVIPSGAFEY---LSKLRELWLRNNPIESIPSYA-FNRVPSLMRLDLGE 180

Query: 273 NSFNSAIPPWLFS-LTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL 331
                 I    F  L +L  L L        +P     L  LE L++S N       P  
Sbjct: 181 LKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGN-HFPEIRPGS 237

Query: 332 FGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQ 391
           F  L  LK L +  + ++  +    + F G  + L  L+L+ N+L          L+ L 
Sbjct: 238 FHGLSSLKKLWVMNSQVS-LIER--NAFDGLAS-LVELNLAHNNLSSLPHDLFTPLRYLV 293

Query: 392 YLRLSGNSF 400
            L L  N +
Sbjct: 294 ELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 92.5 bits (230), Expect = 7e-20
 Identities = 62/234 (26%), Positives = 96/234 (41%), Gaps = 32/234 (13%)

Query: 124 SLLHLKYLDTLDLSLNDFEGAEIPEY-FGQLKNLRYLNLSFSSFSGEIPPQ-LGSLSSLQ 181
           +  HL +L+ L L  N     +I    F  L +L  L L  +  +  IP      LS L+
Sbjct: 94  TFRHLHHLEVLQLGRNSI--RQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLR 150

Query: 182 YLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFV-KLDHVGADWLQAVNMLPSL 240
            L L      +N     + +      + + SL  L+LG + KL+++     +    L +L
Sbjct: 151 ELWL-----RNNP----IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG---LFNL 198

Query: 241 VELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFS-LTSLTKLYLRWNFF 299
             L L  C ++ +P          +  L++S N F   I P  F  L+SL KL++  +  
Sbjct: 199 KYLNLGMCNIKDMP---NLTPLVGLEELEMSGNHF-PEIRPGSFHGLSSLKKLWVMNSQV 254

Query: 300 TGHIPNEFANLKLLEVLDLSNNLDLGGQL----PKLFGILRRLKSLDLSANNLN 349
           +    N F  L  L  L+L++N      L      LF  LR L  L L  N  N
Sbjct: 255 SLIERNAFDGLASLVELNLAHN-----NLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 89.8 bits (223), Expect = 6e-19
 Identities = 55/240 (22%), Positives = 96/240 (40%), Gaps = 24/240 (10%)

Query: 660 IDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSL 719
           +++  N++      +F  L  L VL L  N++      +      L +++L  N L+  +
Sbjct: 80  LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VI 138

Query: 720 PLWISENLSSFFMLRLRSNLLSGDIPQR-LCNLQNLHIIDLSHNNFSGAIP----RCIGN 774
           P    E LS    L LR+N +   IP      + +L  +DL        I       + N
Sbjct: 139 PSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197

Query: 775 LSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALH 834
           L  L  G  +      I  +     P  + ++  +  +++S N+     P     LS+L 
Sbjct: 198 LKYLNLGMCN------IKDM-----PNLTPLVG-LEELEMSGNHFPEIRPGSFHGLSSLK 245

Query: 835 ILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNL----AGKIPSLPNFNDPSIYEGNPLLC 890
            L + ++Q+S     +   LASL +LNL+ NNL          L    +  ++  NP  C
Sbjct: 246 KLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH-HNPWNC 304

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.0 bits (208), Expect = 4e-17
 Identities = 63/359 (17%), Positives = 107/359 (29%), Gaps = 114/359 (31%)

Query: 264 SISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLD 323
             S +  +     S +P  +   ++   L L  N       + F +L  LEVL L  N  
Sbjct: 55  QFSKVVCTRRGL-SEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-- 109

Query: 324 LGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKS 383
                         ++ +++ A          F+G +    +L  L+L  N L      +
Sbjct: 110 -------------SIRQIEVGA----------FNGLA----SLNTLELFDNWLTVIPSGA 142

Query: 384 LGNLKNLQYLRLSGNSFWGSIPSSI-GNLSSLRKLDLSYNGMNGTIPESFGKLSELVDAN 442
              L  L+ L L  N    SIPS     + SL +LDL                    +  
Sbjct: 143 FEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLG-------------------ELK 182

Query: 443 LLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGP 502
            L+      + E  F  L  L+   L                     +K +         
Sbjct: 183 KLEY-----ISEGAFEGLFNLKYLNL------------GMC-----NIKDMP-------- 212

Query: 503 SFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQM--NS 560
                L     L  + +        I    F  LSS +  L + N+Q+   + R      
Sbjct: 213 ----NLTPLVGLEELEMSGNHFP-EIRPGSFHGLSS-LKKLWVMNSQVS-LIERNAFDGL 265

Query: 561 PNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQL 619
            +L  ++L+ N+                         LP ++ + +  L  L+L  N  
Sbjct: 266 ASLVELNLAHNNLSS----------------------LPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.9 bits (205), Expect = 1e-16
 Identities = 57/284 (20%), Positives = 96/284 (33%), Gaps = 62/284 (21%)

Query: 363 PNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSI-GNLSSLRKLDLSY 421
           P+N  YL+L  N+++     +  +L +L+ L+L  NS    I       L+SL  L+L  
Sbjct: 74  PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFD 132

Query: 422 NGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVS 481
           N            L+ +                  F  L +L    L             
Sbjct: 133 N-----------WLTVI--------------PSGAFEYLSKLRELWL------------R 155

Query: 482 YNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEIT 541
            N      ++SI                    L  + L  +   + I    F  L + + 
Sbjct: 156 NN-----PIESIP----------SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN-LK 199

Query: 542 YLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWS----TNADELFLQDNRFSGP 597
           YL L    IK  +P       L  +++S NHF   +   S    ++  +L++ +++ S  
Sbjct: 200 YLNLGMCNIK-DMPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSL- 256

Query: 598 LPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSN 641
           +  N    +  L  L L+ N LS         L  L  L +  N
Sbjct: 257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 18/65 (27%), Positives = 29/65 (44%)

Query: 803 SNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNL 862
             I ++   ++L  NN+     D   +L  L +L L  N +      + + LASL+ L L
Sbjct: 71  QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130

Query: 863 SFNNL 867
             N L
Sbjct: 131 FDNWL 135

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  102 bits (257), Expect = 1e-23
 Identities = 57/276 (20%), Positives = 108/276 (39%), Gaps = 25/276 (9%)

Query: 155 NLRYLNLSFSSFSGEIPP-QLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSL 213
            ++ L+LS +  +  I    L    +LQ L L     +SN     ++    +  S L SL
Sbjct: 53  AVKSLDLSNNRIT-YISNSDLQRCVNLQALVL-----TSNG----INTIEEDSFSSLGSL 102

Query: 214 KLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSEN 273
           + L+L +  L ++ + W +    L SL  L L     + +  +  F + T + +L +   
Sbjct: 103 EHLDLSYNYLSNLSSSWFKP---LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 159

Query: 274 SFNSAIPPWLF-SLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLF 332
              + I    F  LT L +L +  +    + P    +++ +  L L         L    
Sbjct: 160 DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK-QHILLLEIFV 218

Query: 333 GILRRLKSLDLSANNLNGE-----VHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNL 387
            +   ++ L+L   +L+            +    +      + ++  SL  ++ K L  +
Sbjct: 219 DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF-TFRNVKITDESLF-QVMKLLNQI 276

Query: 388 KNLQYLRLSGNSFWGSIPSSI-GNLSSLRKLDLSYN 422
             L  L  S N    S+P  I   L+SL+K+ L  N
Sbjct: 277 SGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 94.8 bits (236), Expect = 5e-21
 Identities = 58/279 (20%), Positives = 98/279 (35%), Gaps = 28/279 (10%)

Query: 131 LDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQL-GSLSSLQYLDLYADS 189
           + +LDLS N            +  NL+ L L+ +  +  I      SL SL++LDL    
Sbjct: 54  VKSLDLSNNRITYIS-NSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDL---- 107

Query: 190 FSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYC- 248
            S N     L   + +W   LSSL  LNL       +G       + L  L  LR+    
Sbjct: 108 -SYNY----LSNLSSSWFKPLSSLTFLNLLGNPYKTLGET--SLFSHLTKLQILRVGNMD 160

Query: 249 QLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFA 308
               I     F   T +  L++  +   S  P  L S+ +++ L L        +     
Sbjct: 161 TFTKIQRKD-FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD 219

Query: 309 NLKLLEVLDLSNNLDLGGQLPKLFGI-------LRRLKSLDLSANNLNGEVHEFFDGFSG 361
               +E L+L +         +L              +++ ++  +L   +         
Sbjct: 220 VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ---- 275

Query: 362 RPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSF 400
             + L  L+ S N L+         L +LQ + L  N +
Sbjct: 276 -ISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 91.7 bits (228), Expect = 6e-20
 Identities = 59/322 (18%), Positives = 99/322 (30%), Gaps = 40/322 (12%)

Query: 232 QAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTK 291
           QA          +     L  IP  L      ++  LDLS N         L    +L  
Sbjct: 25  QASLSCDRNGICKGSSGSLNSIPSGLT----EAVKSLDLSNNRITYISNSDLQRCVNLQA 80

Query: 292 LYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQL----PKLFGILRRLKSLDLSANN 347
           L L  N       + F++L  LE LDLS N      L       F  L  L  L+L  N 
Sbjct: 81  LVLTSNGINTIEEDSFSSLGSLEHLDLSYN-----YLSNLSSSWFKPLSSLTFLNLLGNP 135

Query: 348 LNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELP-KSLGNLKNLQYLRLSGNSFWGSIPS 406
                             L+ L + +     ++  K    L  L+ L +  +      P 
Sbjct: 136 YKTLGE---TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192

Query: 407 SIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESF 466
           S+ ++ ++  L L        +       S +    L        L    F  L   E+ 
Sbjct: 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD----LDTFHFSELSTGETN 248

Query: 467 RLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISD 526
            L  + T                 ++++I +  +       L   + L  +      +  
Sbjct: 249 SLIKKFT----------------FRNVKITDESL-FQVMKLLNQISGLLELEFSRNQLK- 290

Query: 527 TIPGDWFSKLSSEITYLILSNN 548
           ++P   F +L+S +  + L  N
Sbjct: 291 SVPDGIFDRLTS-LQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 87.1 bits (216), Expect = 2e-18
 Identities = 63/337 (18%), Positives = 110/337 (32%), Gaps = 78/337 (23%)

Query: 536 LSSEITYLILSNNQIKGKLPRQM--NSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNR 593
           L+  +  L LSNN+I   +         NL+++ L+SN                 ++++ 
Sbjct: 50  LTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-------------TIEEDS 95

Query: 594 FSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSV-CNLEDLQILSIRSNKLSGEFPNCWY 652
           FS          +  L+ L LS+N LS  + SS    L  L  L++  N          +
Sbjct: 96  FSS---------LGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 145

Query: 653 H--SQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDL 710
              +++      + ++ T      F  L  L  L +  ++L    P SL++   ++ + L
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205

Query: 711 GGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPR 770
              Q    L     +  SS   L LR             +L   H  +LS    +     
Sbjct: 206 HMKQHI-LLLEIFVDVTSSVECLELRDT-----------DLDTFHFSELSTGETNS---- 249

Query: 771 CIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNL 830
            +                                      ++ ++  +L  Q+   +  +
Sbjct: 250 -LIKKFTF-------------------------------RNVKITDESLF-QVMKLLNQI 276

Query: 831 SALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNL 867
           S L  L  S NQL          L SL K+ L  N  
Sbjct: 277 SGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 81.3 bits (201), Expect = 1e-16
 Identities = 60/357 (16%), Positives = 109/357 (30%), Gaps = 86/357 (24%)

Query: 267 VLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGG 326
           +   S  S NS IP  L    ++  L L  N  T    ++      L+ L L++N     
Sbjct: 35  ICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN----- 86

Query: 327 QL----PKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPK 382
            +       F  L  L+ LDLS N L+     +F   S    +L +L+L  N  +     
Sbjct: 87  GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS----SLTFLNLLGNPYKTLGET 142

Query: 383 SL-GNLKNLQYLRLSGNSFWGSIPSSI-GNLSSLRKLDLSYNGMNGTIPESFGKLSELVD 440
           SL  +L  LQ LR+     +  I       L+ L +L++  + +    P+S   +  +  
Sbjct: 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202

Query: 441 ANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQV 500
             L       +L E        +E   L                +  F    +       
Sbjct: 203 LILHMKQHI-LLLEIFVDVTSSVECLEL------------RDTDLDTFHFSELS------ 243

Query: 501 GPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNS 560
                                     T   +   K  +    + +++  +   +      
Sbjct: 244 --------------------------TGETNSLIKKFT-FRNVKITDESLFQVMKLLNQI 276

Query: 561 PNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWN 617
             L  ++ S N  +                       +P+ I   +  LQ+++L  N
Sbjct: 277 SGLLELEFSRNQLKS----------------------VPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.4 bits (139), Expect = 8e-09
 Identities = 31/151 (20%), Positives = 63/151 (41%), Gaps = 9/151 (5%)

Query: 127 HLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQL-GSLSSLQYLDL 185
            L +L+ L++  +D +  E P+    ++N+ +L L        +        SS++ L+L
Sbjct: 172 GLTFLEELEIDASDLQSYE-PKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLEL 229

Query: 186 YADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRL 245
                 +   S  L     N L    + + + +    L  V    ++ +N +  L+EL  
Sbjct: 230 RDTDLDTFHFS-ELSTGETNSLIKKFTFRNVKITDESLFQV----MKLLNQISGLLELEF 284

Query: 246 HYCQLQGIPLSLPFINFTSISVLDLSENSFN 276
              QL+ +P  + F   TS+  + L  N ++
Sbjct: 285 SRNQLKSVPDGI-FDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 23/65 (35%), Positives = 33/65 (50%)

Query: 803 SNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNL 862
           S +   V S+DLS N +T     ++     L  L L+ N ++     S SSL SL  L+L
Sbjct: 48  SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107

Query: 863 SFNNL 867
           S+N L
Sbjct: 108 SYNYL 112

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  101 bits (253), Expect = 2e-23
 Identities = 62/325 (19%), Positives = 111/325 (34%), Gaps = 52/325 (16%)

Query: 130 YLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPP-QLGSLSSLQYLDLYAD 188
           +L  +  S        +P+      +   L+L  +  S E+       L  L  L L   
Sbjct: 34  HLRVVQCSDLGL--KAVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVL--- 85

Query: 189 SFSSNS-GSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHY 247
              +N    +   A      S L  L+ L +    L  +        N+  SLVELR+H 
Sbjct: 86  --VNNKISKIHEKA-----FSPLRKLQKLYISKNHLVEIPP------NLPSSLVELRIHD 132

Query: 248 CQLQGIPLSLPFINFTSISVLDLSENSF-NSAIPPWLFSLTSLTKLYLRWNFFTGHIPNE 306
            +++ +P  + F    +++ +++  N   NS   P  F    L  L +     TG   + 
Sbjct: 133 NRIRKVPKGV-FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL 191

Query: 307 FANLKLLEVLDLSNNLDLGGQLPKL----FGILRRLKSLDLSANNLNGEVHEFFDGFSGR 362
                 L  L L +N     ++  +         +L  L L  N +    +         
Sbjct: 192 PET---LNELHLDHN-----KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP-- 241

Query: 363 PNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSI-------GNLSSLR 415
              L  L L +N L   +P  L +LK LQ + L  N+    +  +           +   
Sbjct: 242 --TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI-TKVGVNDFCPVGFGVKRAYYN 297

Query: 416 KLDLSYNGMNGTI--PESFGKLSEL 438
            + L  N +      P +F  +++ 
Sbjct: 298 GISLFNNPVPYWEVQPATFRCVTDR 322

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 94.7 bits (236), Expect = 3e-21
 Identities = 67/384 (17%), Positives = 123/384 (32%), Gaps = 91/384 (23%)

Query: 264 SISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLD 323
            + V+  S+     A+P  +      T L L+ N  +    ++F  L+ L  L L NN  
Sbjct: 34  HLRVVQCSDLGL-KAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK- 89

Query: 324 LGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKS 383
           +     K F  LR+L+ L +S N+L  E+          P++L  L +  N +       
Sbjct: 90  ISKIHEKAFSPLRKLQKLYISKNHLV-EIP------PNLPSSLVELRIHDNRIRKVPKGV 142

Query: 384 LGNLKNLQYLRLSGNSF-WGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSEL-VDA 441
              L+N+  + + GN            +   L  L +S   + G   +    L+EL +D 
Sbjct: 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDH 202

Query: 442 NLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVG 501
           N +Q      ++    +   +L    L             +N          QI      
Sbjct: 203 NKIQA-----IELEDLLRYSKLYRLGL------------GHN----------QIR----- 230

Query: 502 PSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQM-NS 560
                                     I     S L + +  L L NN++  ++P  + + 
Sbjct: 231 -------------------------MIENGSLSFLPT-LRELHLDNNKLS-RVPAGLPDL 263

Query: 561 PNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLS 620
             L+ + L +N+                +  N F        G        + L  N + 
Sbjct: 264 KLLQVVYLHTNNIT-------------KVGVNDFCPV---GFGVKRAYYNGISLFNNPVP 307

Query: 621 GRI--PSSVCNLEDLQILSIRSNK 642
                P++   + D   +   + K
Sbjct: 308 YWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 92.8 bits (231), Expect = 2e-20
 Identities = 67/348 (19%), Positives = 122/348 (35%), Gaps = 68/348 (19%)

Query: 513 ELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQM--NSPNLRSIDLSS 570
            L  V   ++G+   +P +    +S + T L L NN I  +L +       +L ++ L +
Sbjct: 34  HLRVVQCSDLGLK-AVPKE----ISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVN 87

Query: 571 NH--------FEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGR 622
           N         F            +L++  N     +P N   L   L  L +  N++  +
Sbjct: 88  NKISKIHEKAFSPL-----RKLQKLYISKNHLVE-IPPN---LPSSLVELRIHDNRIR-K 137

Query: 623 IPSSVC-NLEDLQILSIRSNKLSGEFPNCWYHSQMFWG-----IDISNNSLTGSIPSSFG 676
           +P  V   L ++  + +  N L     N  +    F G     + IS   LT  IP    
Sbjct: 138 VPKGVFSGLRNMNCIEMGGNPLE----NSGFEPGAFDGLKLNYLRISEAKLT-GIPK--D 190

Query: 677 SLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLR 736
              +L+ L L +N +       L   + L  + LG NQ+   +       L +   L L 
Sbjct: 191 LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLD 249

Query: 737 SNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVK 796
           +N LS  +P  L +L+ L ++ L  NN +  +                  F  +      
Sbjct: 250 NNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVG--------------VNDFCPV------ 287

Query: 797 GRNPEYSNIIADVNSIDLSWNNLT-GQIPDEI-GNLSALHILNLSHNQ 842
                +    A  N I L  N +   ++       ++    +   + +
Sbjct: 288 ----GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 89.3 bits (222), Expect = 2e-19
 Identities = 57/320 (17%), Positives = 106/320 (33%), Gaps = 59/320 (18%)

Query: 562 NLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSG 621
           +LR +  S    +      S +   L LQ+N  S  L ++    +  L  L L  N++S 
Sbjct: 34  HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNKISK 92

Query: 622 RIPSSVCNLEDLQILSIRSNKLS----GEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGS 677
               +   L  LQ L I  N L         +          + I +N +       F  
Sbjct: 93  IHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVE-------LRIHDNRIRKVPKGVFSG 145

Query: 678 LRSLSVLLLSNNNL-SGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLR 736
           LR+++ + +  N L + G      +   L  + +   +L+  +P  + E L+    L L 
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPETLNE---LHLD 201

Query: 737 SNLLSGDIPQR-LCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVV 795
            N +   I    L     L+ + L HN         +  L  L                 
Sbjct: 202 HNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE--------------- 245

Query: 796 KGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQS----- 850
                           + L  N L+ ++P  + +L  L ++ L  N ++  +  +     
Sbjct: 246 ----------------LHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPV 287

Query: 851 --LSSLASLSKLNLSFNNLA 868
                 A  + ++L  N + 
Sbjct: 288 GFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 84.3 bits (209), Expect = 1e-17
 Identities = 61/341 (17%), Positives = 117/341 (34%), Gaps = 77/341 (22%)

Query: 363 PNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPS-SIGNLSSLRKLDLSY 421
             +   LDL +N +          L++L  L L  N     I   +   L  L+KL +S 
Sbjct: 53  SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI-SKIHEKAFSPLRKLQKLYISK 111

Query: 422 NGMNGTIPESFGKLSEL-VDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNV 480
           N +    P     L EL +  N ++      + +  F  L+ +    +            
Sbjct: 112 NHLVEIPPNLPSSLVELRIHDNRIRK-----VPKGVFSGLRNMNCIEM------------ 154

Query: 481 SYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEI 540
             N           +EN                                   F  L   +
Sbjct: 155 GGN----------PLEN----------------------------SGFEPGAFDGLK--L 174

Query: 541 TYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWS----TNADELFLQDNRFSG 596
            YL +S  ++   +P+ +    L  + L  N  +  + L      +    L L  N+   
Sbjct: 175 NYLRISEAKLT-GIPKDL-PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRM 231

Query: 597 PLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLS----GEFPNCWY 652
            +     S +P L+ L+L  N+LS R+P+ + +L+ LQ++ + +N ++     +F    +
Sbjct: 232 -IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF 289

Query: 653 HSQMFW--GIDISNNSLTGSI--PSSFGSLRSLSVLLLSNN 689
             +  +  GI + NN +      P++F  +     +   N 
Sbjct: 290 GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 79.7 bits (197), Expect = 4e-16
 Identities = 64/403 (15%), Positives = 115/403 (28%), Gaps = 111/403 (27%)

Query: 365 NLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGM 424
           +L  +  S   L+  +PK +    +   L L  N            L  L  L L  N  
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-- 88

Query: 425 NGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNW 484
                    K+S++               E  F  L++L+   +            S N 
Sbjct: 89  ---------KISKI--------------HEKAFSPLRKLQKLYI------------SKN- 112

Query: 485 VPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLI 544
                L  I                    L  + + +  I   +P   FS L + +  + 
Sbjct: 113 ----HLVEIP------PNLPS-------SLVELRIHDNRIR-KVPKGVFSGLRN-MNCIE 153

Query: 545 LSNNQIKGKL--PRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENI 602
           +  N ++     P   +   L  + +S     G         +EL L  N+    +    
Sbjct: 154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQA-IELED 212

Query: 603 GSLMPRLQRLYLSWNQLSGRIPSSVC-NLEDLQILSIRSNKLSGEFPNCWYHSQMFWGID 661
                +L RL L  NQ+   I +     L  L+ L + +NKLS                 
Sbjct: 213 LLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS----------------- 254

Query: 662 ISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPL 721
                    +P+    L+ L V+ L  NN++                 +G N        
Sbjct: 255 --------RVPAGLPDLKLLQVVYLHTNNIT----------------KVGVNDFCPVGFG 290

Query: 722 WISENLSSFFMLRLRSNLLS-GDIPQRL-CNLQNLHIIDLSHN 762
                 +    + L +N +   ++       + +   I   + 
Sbjct: 291 VKRAYYNG---ISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 74.7 bits (184), Expect = 2e-14
 Identities = 42/207 (20%), Positives = 69/207 (33%), Gaps = 27/207 (13%)

Query: 124 SLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYL 183
               L+ ++ +++  N  E +           L YL +S +  +  IP  L    +L  L
Sbjct: 142 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNEL 198

Query: 184 DLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVEL 243
            L       N     + A  L  L   S L  L LG  ++  +    L     LP+L EL
Sbjct: 199 HL-----DHNK----IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF---LPTLREL 246

Query: 244 RLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFS-------LTSLTKLYLRW 296
            L   +L  +P  LP  +   + V+ L  N+  + +    F              + L  
Sbjct: 247 HLDNNKLSRVPAGLP--DLKLLQVVYLHTNNI-TKVGVNDFCPVGFGVKRAYYNGISLFN 303

Query: 297 NFFTGHI--PNEFANLKLLEVLDLSNN 321
           N        P  F  +     +   N 
Sbjct: 304 NPVPYWEVQPATFRCVTDRLAIQFGNY 330

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  100 bits (250), Expect = 5e-22
 Identities = 55/274 (20%), Positives = 96/274 (35%), Gaps = 36/274 (13%)

Query: 598 LPENIGSLMPRLQRLYLS---WNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHS 654
              +  S   + ++  L     N+    +    C +     L +    LS   P+     
Sbjct: 25  TYADYFSAWDKWEKQALPGENRNEAVSLLKE--CLINQFSELQLNRLNLS-SLPDNL--P 79

Query: 655 QMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQ 714
                ++I+ N+L  S+P    SL  L      +N LS  +P    +   L   D+  NQ
Sbjct: 80  PQITVLEITQNALI-SLPELPASLEYLD---ACDNRLST-LPELPASLKHL---DVDNNQ 131

Query: 715 LSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGN 774
           L+  LP   +  L     +   +N L+  +P+   +L+ L    + +N  +  +P    +
Sbjct: 132 LT-MLPELPA-LLEY---INADNNQLT-MLPELPTSLEVL---SVRNNQLT-FLPELPES 181

Query: 775 LSALVYGNNS-EVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSAL 833
           L AL    N  E    +  R          +            N +T  IP+ I +L   
Sbjct: 182 LEALDVSTNLLESLPAVPVRN--------HHSEETEIFFRCRENRIT-HIPENILSLDPT 232

Query: 834 HILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNL 867
             + L  N LS  I +SLS   +    +      
Sbjct: 233 CTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 97.0 bits (241), Expect = 5e-21
 Identities = 78/468 (16%), Positives = 149/468 (31%), Gaps = 80/468 (17%)

Query: 403 SIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWE---GILQESQFMN 459
           SI   I N  SL   +  YN ++GT  + F    +     L   +      +L+E     
Sbjct: 2   SIMLPINNNFSL-SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ 60

Query: 460 LKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVIL 519
              L                ++        L S+                   ++T + +
Sbjct: 61  FSEL---------------QLNRL-----NLSSLPDNLPP-------------QITVLEI 87

Query: 520 RNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPL 579
               +  ++P +  + L     YL   +N++   LP      +L+ +D+ +N     LP 
Sbjct: 88  TQNALI-SLP-ELPASL----EYLDACDNRLS-TLPELP--ASLKHLDVDNNQLT-MLPE 137

Query: 580 WSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIR 639
                + +   +N+ +  LPE   SL    + L +  NQL+  +P      E L+ L + 
Sbjct: 138 LPALLEYINADNNQLTM-LPELPTSL----EVLSVRNNQLT-FLPEL---PESLEALDVS 188

Query: 640 SNKLSG---EFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIP 696
           +N L           +  +         N +T  IP +  SL     ++L +N LS  I 
Sbjct: 189 TNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247

Query: 697 CSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHI 756
            SL      T+                 +N     +    +     +    +  + +   
Sbjct: 248 ESLSQ---QTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFE 304

Query: 757 IDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSW 816
            +   N FS      +  LS  V   N+  F++ +   ++         ++    +    
Sbjct: 305 HEEHANTFS----AFLDRLSDTVSARNTSGFREQVAAWLEK--------LSASAELRQQS 352

Query: 817 NNLTGQIPDEIGNLSALHILNLS-----HNQLSGAIPQSLSSLASLSK 859
             +     +   +  AL   NL      H    G       +L SL +
Sbjct: 353 FAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGR 400

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 94.3 bits (234), Expect = 4e-20
 Identities = 51/290 (17%), Positives = 85/290 (29%), Gaps = 53/290 (18%)

Query: 235 NMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYL 294
           +      +  L           L        S L L+  +  S++P  L     +T L +
Sbjct: 31  SAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNL-SSLPDNLPP--QITVLEI 87

Query: 295 RWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHE 354
             N     +P   A+   LE LD  +N     +L  L  +   LK LD+  N L      
Sbjct: 88  TQNALI-SLPELPAS---LEYLDACDN-----RLSTLPELPASLKHLDVDNNQLT----- 133

Query: 355 FFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLK-----------------NLQYLRLSG 397
                   P  LEY++  +N L   LP+   +L+                 +L+ L +S 
Sbjct: 134 ---MLPELPALLEYINADNNQLT-MLPELPTSLEVLSVRNNQLTFLPELPESLEALDVST 189

Query: 398 NSFWGSIPSSIGNLSSLRK----LDLSYNGMNGTIPESFGKLSELVDANLLQN------- 446
           N    S+P+         +         N +   IPE+   L       L  N       
Sbjct: 190 NLL-ESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247

Query: 447 --SWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQ 494
               +   Q                     + + +    W P  +   + 
Sbjct: 248 ESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVS 297

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 83.5 bits (206), Expect = 1e-16
 Identities = 59/357 (16%), Positives = 105/357 (29%), Gaps = 98/357 (27%)

Query: 115 SCLGGKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQL 174
           S        +    +       + N+   + + E    +     L L+  + S  +P  L
Sbjct: 23  SGTYADYFSAWDKWEKQALPGENRNEAV-SLLKE--CLINQFSELQLNRLNLS-SLPDNL 78

Query: 175 GSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAV 234
                +  L++     + N+               L SL                     
Sbjct: 79  P--PQITVLEI-----TQNA---------------LISLP-------------------- 96

Query: 235 NMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYL 294
            +  SL  L     +L  +P                                 SL  L +
Sbjct: 97  ELPASLEYLDACDNRLSTLPELPA-----------------------------SLKHLDV 127

Query: 295 RWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHE 354
             N  T  +P   A    LE ++  NN     QL  L  +   L+ L +  N L      
Sbjct: 128 DNNQLT-MLPELPAL---LEYINADNN-----QLTMLPELPTSLEVLSVRNNQLT----- 173

Query: 355 FFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQ----YLRLSGNSFWGSIPSSIGN 410
                   P +LE LD+S+N LE  LP       + +    + R   N     IP +I +
Sbjct: 174 ---FLPELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILS 228

Query: 411 LSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFR 467
           L     + L  N ++  I ES  + +   D +  +  +     +   ++    ++  
Sbjct: 229 LDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVT 285

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 75.0 bits (184), Expect = 5e-14
 Identities = 42/220 (19%), Positives = 77/220 (35%), Gaps = 59/220 (26%)

Query: 661 DISNNSLTG---SIPSSFGSLRSLSVLLLSNNNLSGGIP-CSLQNCTGLTSIDLGGNQLS 716
           +   N+++G      S++      ++   + N     +  C +      + + L    LS
Sbjct: 16  NSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ---FSELQLNRLNLS 72

Query: 717 GSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLS 776
            SLP  +   ++    L +  N L   +P+   +L+ L   D   N  S  +P    +L 
Sbjct: 73  -SLPDNLPPQITV---LEITQNALI-SLPELPASLEYL---DACDNRLS-TLPELPASLK 123

Query: 777 ALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHIL 836
            L                                  D+  N LT  +P+    L     +
Sbjct: 124 HL----------------------------------DVDNNQLT-MLPELPALLE---YI 145

Query: 837 NLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSLPN 876
           N  +NQL+  +P+  +   SL  L++  N L   +P LP 
Sbjct: 146 NADNNQLT-MLPELPT---SLEVLSVRNNQL-TFLPELPE 180

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 71.9 bits (176), Expect = 4e-13
 Identities = 47/352 (13%), Positives = 94/352 (26%), Gaps = 42/352 (11%)

Query: 123 PSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQY 182
                +     L L+  +     +P+       +  L ++ ++    +P    SL  L  
Sbjct: 53  LKECLINQFSELQLNRLNLS--SLPDNLPP--QITVLEITQNALI-SLPELPASLEYLDA 107

Query: 183 LDLYADSFSSNSGS---LALHAQNLNWL-SGLSSLKLLNLGFVKLDHVGADW-------- 230
            D    +      S   L +    L  L    + L+ +N    +L  +            
Sbjct: 108 CDNRLSTLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSV 167

Query: 231 ----LQAV-NMLPSLVELRLHYCQLQGIPLSLPFINF--TSISVLDLSENSFNSAIPPWL 283
               L  +  +  SL  L +    L+ +P      +    +       EN   + IP  +
Sbjct: 168 RNNQLTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRI-THIPENI 226

Query: 284 FSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDL 343
            SL     + L  N  +  I    +                     +         ++  
Sbjct: 227 LSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTA 286

Query: 344 S-ANNLNGEVHEFFDGFSGRPNN------LEYLDLSSNSLEGELPKS-----LGNLKNLQ 391
               N   +V + +  F    +       L+ L  + ++      +      L  L    
Sbjct: 287 WFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASA 346

Query: 392 YLRLSGNSFWGSIPSSIGNLSSLRKLDLS-----YNGMNGTIPESFGKLSEL 438
            LR    +       S  +  +L   +L      +    G      G L  L
Sbjct: 347 ELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSL 398

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 95.3 bits (237), Expect = 2e-21
 Identities = 66/281 (23%), Positives = 93/281 (33%), Gaps = 24/281 (8%)

Query: 130 YLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADS 189
            L  +D   +  +  +I +    LK L        S       ++  +S LQ L L    
Sbjct: 48  LLKRVDTEADLGQFTDIIKSL-SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106

Query: 190 FSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQ 249
            +  +    L A   +    L+ L L N+ +   D   A+  Q   + P L  L +    
Sbjct: 107 VTGTAPPPLLEATGPD----LNILNLRNVSWATRDAWLAELQQ--WLKPGLKVLSIAQAH 160

Query: 250 LQGIPLSLPFINFTSISVLDLSENSFNSAIPPW----LFSLTSLTKLYLRWNFFT---GH 302
                       F ++S LDLS+N                  +L  L LR        G 
Sbjct: 161 SLNFSCEQ-VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219

Query: 303 IPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGR 362
                A    L+ LDLS+N               +L SL+LS   L            G 
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV-------PKGL 272

Query: 363 PNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGS 403
           P  L  LDLS N L+   P     L  +  L L GN F  S
Sbjct: 273 PAKLSVLDLSYNRLD-RNPSPDE-LPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.9 bits (202), Expect = 6e-17
 Identities = 53/315 (16%), Positives = 96/315 (30%), Gaps = 61/315 (19%)

Query: 563 LRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSL--MPRLQRLYLSWNQLS 620
           L+ +D  ++  + T  + S +   L ++  R    +      +  +  LQ L L   +++
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 621 GRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFW------GIDISNNSLTGSIPSS 674
           G  P  +       +  +    +S    + W      W       + I+           
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168

Query: 675 FGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLR 734
                +LS L LS+N   G                     L  +L       L    +  
Sbjct: 169 VRVFPALSTLDLSDNPELGERG------------------LISALCPLKFPTLQVLALRN 210

Query: 735 LRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRV 794
                 SG           L  +DLSHN+   A                           
Sbjct: 211 AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG------------------------- 245

Query: 795 VKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSL 854
                    +  + +NS++LS+  L  Q+P  +   + L +L+LS+N+L    P     L
Sbjct: 246 -----APSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDR-NPSPDE-L 295

Query: 855 ASLSKLNLSFNNLAG 869
             +  L+L  N    
Sbjct: 296 PQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.0 bits (192), Expect = 1e-15
 Identities = 34/208 (16%), Positives = 66/208 (31%), Gaps = 10/208 (4%)

Query: 114 GSCLGGKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQ 173
           G+     +  +   L  L+  ++S    +             L+ L+++ +        Q
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168

Query: 174 LGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQA 233
           +    +L  LDL     S N         +        +L++L L    ++         
Sbjct: 169 VRVFPALSTLDL-----SDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 234 VNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLY 293
                 L  L L +  L+    +      + ++ L+LS       +P  L +   L+ L 
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGLPA--KLSVLD 280

Query: 294 LRWNFFTGHIPNEFANLKLLEVLDLSNN 321
           L +N      P     L  +  L L  N
Sbjct: 281 LSYNRLD-RNP-SPDELPQVGNLSLKGN 306

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 75.3 bits (185), Expect = 1e-14
 Identities = 43/218 (19%), Positives = 70/218 (32%), Gaps = 16/218 (7%)

Query: 562 NLRSIDLSSNHFEGTLPLWS-TNADELFLQDNRFSGPLPENIGSL-MPRLQRLYLSWNQL 619
            +R+  + S    G L +   +   EL L++   +G  P  +     P L  L L     
Sbjct: 74  TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW 133

Query: 620 SGRIPS----SVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSI---- 671
           + R              L++LSI                     +D+S+N   G      
Sbjct: 134 ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193

Query: 672 ---PSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLS 728
              P  F +L+ L++        SG           L  +DL  N L  +      +  S
Sbjct: 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253

Query: 729 SFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSG 766
               L L    L   +P+       L ++DLS+N    
Sbjct: 254 QLNSLNLSFTGLKQ-VPK--GLPAKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.2 bits (182), Expect = 2e-14
 Identities = 52/337 (15%), Positives = 86/337 (25%), Gaps = 68/337 (20%)

Query: 250 LQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPN---E 306
           L    + L     +   +L   +   +      +    SL +L +R       I      
Sbjct: 31  LGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALR 90

Query: 307 FANLKLLEVLDLSNNLDLG-GQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNN 365
              +  L+ L L N    G    P L      L  L+L   +         +        
Sbjct: 91  VLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPG 150

Query: 366 LEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSI----GNLSSLRKLDLSY 421
           L+ L ++         + +     L  L LS N   G              +L+ L L  
Sbjct: 151 LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN 210

Query: 422 NGMN---GTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVF 478
            GM    G          +L   +L  NS              +L S             
Sbjct: 211 AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS------------L 258

Query: 479 NVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSS 538
           N+S+                               L  V                  L +
Sbjct: 259 NLSFT-----------------------------GLKQV---------------PKGLPA 274

Query: 539 EITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEG 575
           +++ L LS N++    P     P + ++ L  N F  
Sbjct: 275 KLSVLDLSYNRLDR-NPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.5 bits (170), Expect = 7e-13
 Identities = 46/261 (17%), Positives = 77/261 (29%), Gaps = 49/261 (18%)

Query: 512 TELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSN 571
           + L  + L N+ ++ T P         ++  L L N     +              L   
Sbjct: 95  SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV- 153

Query: 572 HFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIP--SSVC- 628
                          L +               + P L  L LS N   G     S++C 
Sbjct: 154 ---------------LSIAQAHSLN-FSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197

Query: 629 -NLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLS 687
                LQ+L++R+  +                      + +G   +   +   L  L LS
Sbjct: 198 LKFPTLQVLALRNAGM---------------------ETPSGVCSALAAARVQLQGLDLS 236

Query: 688 NNNLSGGIPCSL-QNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQ 746
           +N+L            + L S++L    L   +P  +   LS    L L  N L    P 
Sbjct: 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKLSV---LDLSYNRLDR-NPS 291

Query: 747 RLCNLQNLHIIDLSHNNFSGA 767
               L  +  + L  N F  +
Sbjct: 292 PD-ELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 55.3 bits (133), Expect = 4e-08
 Identities = 43/229 (18%), Positives = 74/229 (32%), Gaps = 16/229 (6%)

Query: 665 NSLTGSIPSSFGSLRSLSVLLLS-NNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWI 723
           N L  +    +G  RSL  LL   +     G    +     L  + +   ++   +    
Sbjct: 29  NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA 88

Query: 724 SENLSSFFM--LRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYG 781
              L    +  L L +  ++G  P  L       +  L+  N S A         A +  
Sbjct: 89  LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT---RDAWLAELQQ 145

Query: 782 NNSEVFQQLIWRVVKGRN--PEYSNIIADVNSIDLSWNNLTGQIPDEI----GNLSALHI 835
                 + L        N   E   +   ++++DLS N   G+              L +
Sbjct: 146 WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQV 205

Query: 836 LNLSHNQ---LSGAIPQSLSSLASLSKLNLSFNNLAGKIPSLPNFNDPS 881
           L L +      SG      ++   L  L+LS N+L       P+ + PS
Sbjct: 206 LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD-AAGAPSCDWPS 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 95.7 bits (238), Expect = 3e-21
 Identities = 50/238 (21%), Positives = 87/238 (36%), Gaps = 13/238 (5%)

Query: 235 NMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFS-LTSLTKLY 293
           ++  + +ELR    +L+ I     F  F  +  +++S+N     I   +FS L  L ++ 
Sbjct: 27  DLPRNAIELRFVLTKLRVIQKGA-FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85

Query: 294 L-RWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEV 352
           + + N      P  F NL  L+ L +SN   +            +   LD+  N     +
Sbjct: 86  IEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTI 144

Query: 353 HEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSI-GNL 411
               + F G       L L+ N ++ E+  S  N   L  L LS N+    +P+ +    
Sbjct: 145 ER--NSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGA 201

Query: 412 SSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLT 469
           S    LD+S   ++         L +L   +          +      L  L    LT
Sbjct: 202 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK-----KLPTLEKLVALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 79.5 bits (196), Expect = 6e-16
 Identities = 50/296 (16%), Positives = 86/296 (29%), Gaps = 75/296 (25%)

Query: 131 LDTLDLSLNDFEGAEIPEY-FGQLKNLRYLNLSFSSFSGEIPPQ-LGSLSSLQYLDLYAD 188
              L   L       I +  F    +L  + +S +     I      +L  L  + +   
Sbjct: 32  AIELRFVLTKLR--VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI--- 86

Query: 189 SFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYC 248
                        +  N L  ++     N                   LP+L  L +   
Sbjct: 87  -------------EKANNLLYINPEAFQN-------------------LPNLQYLLISNT 114

Query: 249 QLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFS-LTS-LTKLYLRWNFFTGHIPNE 306
            ++ +P  +  I+     +LD+ +N     I    F  L+     L+L  N       + 
Sbjct: 115 GIKHLP-DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA 173

Query: 307 FANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNL 366
           F   +L E+    NN                L+ L              F G S      
Sbjct: 174 FNGTQLDELNLSDNN---------------NLEELPNDV----------FHGAS----GP 204

Query: 367 EYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYN 422
             LD+S   +       L NLK L+            +P ++  L +L +  L+Y 
Sbjct: 205 VILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.8 bits (158), Expect = 4e-11
 Identities = 48/271 (17%), Positives = 87/271 (32%), Gaps = 44/271 (16%)

Query: 612 LYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSI 671
                ++++  IPS +    +   L     KL       +        I+IS N +   I
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 672 PSS-FGSLRSLSVLLLSNNNLSGGIPCS-LQNCTGLTSIDLGGNQLSGSLPLWISENLSS 729
            +  F +L  L  + +   N    I     QN   L  + +    +   LP     +   
Sbjct: 71  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQ 129

Query: 730 FFMLRLRSNLLSGDIPQR-LCNLQ-NLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVF 787
             +L ++ N+    I +     L     I+ L+ N     I     N + L         
Sbjct: 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQL--------- 179

Query: 788 QQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEI-GNLSALHILNLSHNQLSGA 846
            +L                          NNL  ++P+++    S   IL++S  ++   
Sbjct: 180 DELNL---------------------SDNNNLE-ELPNDVFHGASGPVILDISRTRIHSL 217

Query: 847 IPQSLSSLASLSKLNLSFNNLAGKIPSLPNF 877
               L +L  L   +    NL  K+P+L   
Sbjct: 218 PSYGLENLKKLRARST--YNLK-KLPTLEKL 245

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.0 bits (148), Expect = 7e-10
 Identities = 50/283 (17%), Positives = 83/283 (29%), Gaps = 77/283 (27%)

Query: 363 PNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSI-GNLSSLRKLDLSY 421
           P N   L      L      +     +L+ + +S N     I + +  NL  L ++ +  
Sbjct: 29  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE- 87

Query: 422 NGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVS 481
                              AN L       +    F NL  L+   +            S
Sbjct: 88  ------------------KANNLLY-----INPEAFQNLPNLQYLLI------------S 112

Query: 482 YNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVIL-RNVGISDTIPGDWFSKLSSEI 540
                   +K +            V      +   + +  N+ I  TI  + F  LS E 
Sbjct: 113 NT-----GIKHLP----------DVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFES 156

Query: 541 TYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPE 600
             L L+ N I+       N   L  ++LS N                    N     LP 
Sbjct: 157 VILWLNKNGIQEIHNSAFNGTQLDELNLSDN--------------------NNLEE-LPN 195

Query: 601 NIGSLMPRLQRLYLSWNQLSGRIPSSVC-NLEDLQILSIRSNK 642
           ++         L +S  ++   +PS    NL+ L+  S  + K
Sbjct: 196 DVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 26/176 (14%), Positives = 48/176 (27%), Gaps = 39/176 (22%)

Query: 702 CTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSH 761
           C+         ++++  +P  +  N      LR     L            +L  I++S 
Sbjct: 9   CSN-RVFLCQESKVT-EIPSDLPRNAIE---LRFVLTKLRVIQKGAFSGFGDLEKIEISQ 63

Query: 762 NNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTG 821
           N+    I                +VF  L                  ++ I +   N   
Sbjct: 64  NDVLEVIEA--------------DVFSNL----------------PKLHEIRIEKANNLL 93

Query: 822 QIPDEI-GNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSLPN 876
            I  E   NL  L  L +S+  +                L++  N     I ++  
Sbjct: 94  YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI---NIHTIER 146

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 33/212 (15%), Positives = 62/212 (29%), Gaps = 44/212 (20%)

Query: 147 PEYFGQLKNLRYLNLSFSSFSGEIPPQL-GSLSSLQYLDLY---------ADSF---SSN 193
           PE F  L NL+YL +S +     +P            LD+           +SF   S  
Sbjct: 97  PEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE 155

Query: 194 SGSLALHAQNLNWL-----SGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYC 248
           S  L L+   +  +     +G    +L       L+ +  D           V L +   
Sbjct: 156 SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFH---GASGPVILDISRT 212

Query: 249 QLQGIP------------LSL-------PFINFTSISVLDLSENSFNSAIPPWLFSLTSL 289
           ++  +P             S              ++    L+  S   A   W      +
Sbjct: 213 RIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYPSHCCAFANW---RRQI 269

Query: 290 TKLYLRWNFFTGHIPNEFANLKLLEVLDLSNN 321
           ++L+   N        ++      +   L+ +
Sbjct: 270 SELHPICNKSILRQEVDYMTQARGQRSSLAED 301

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 86.9 bits (216), Expect = 6e-19
 Identities = 56/221 (25%), Positives = 85/221 (38%), Gaps = 22/221 (9%)

Query: 238 PSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFS-LTSLTKLYLRW 296
            S   L L +  L+ +     F +F  + VLDLS       I    +  L+ L+ L L  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTG 85

Query: 297 NFFTGHIPNEFANLKLLEVLDLSNNLDLGGQL----PKLFGILRRLKSLDLSANNL-NGE 351
           N         F+ L  L+ L           L        G L+ LK L+++ N + + +
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVET-----NLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 352 VHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQY----LRLSGNSFWGSIPSS 407
           + E+F   +    NLE+LDLSSN ++      L  L  +      L LS N     I   
Sbjct: 141 LPEYFSNLT----NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPG 195

Query: 408 IGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSW 448
                 L++L L  N +       F +L+ L    L  N W
Sbjct: 196 AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 75.8 bits (187), Expect = 4e-15
 Identities = 54/260 (20%), Positives = 86/260 (33%), Gaps = 58/260 (22%)

Query: 609 LQRLYLSWNQLSGRIPSSV-CNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSL 667
            + L LS+N L   + S    +  +LQ+L +   ++                        
Sbjct: 30  TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ----------------------- 65

Query: 668 TGSIPSS-FGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISEN 726
             +I    + SL  LS L+L+ N +      +    + L  +      L+ SL  +   +
Sbjct: 66  --TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGH 122

Query: 727 LSSFFMLRLRSN-LLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSE 785
           L +   L +  N + S  +P+   NL NL  +DLS N    +I                 
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIY--------------CT 167

Query: 786 VFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSG 845
             + L              +     S+DLS N +   I         L  L L  NQL  
Sbjct: 168 DLRVL------------HQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKS 214

Query: 846 AIPQSLSSLASLSKLNLSFN 865
                   L SL K+ L  N
Sbjct: 215 VPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 49/213 (23%), Positives = 80/213 (37%), Gaps = 25/213 (11%)

Query: 277 SAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQL----PKLF 332
             IP  L    S   L L +N         F +   L+VLDLS       ++       +
Sbjct: 20  YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-----EIQTIEDGAY 72

Query: 333 GILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQY 392
             L  L +L L+ N +       F G     ++L+ L     +L       +G+LK L+ 
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSG----LSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 393 LRLSGNSFWGSIPSS--IGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANL---LQNS 447
           L ++ N    S        NL++L  LDLS N +          L ++   NL   L  +
Sbjct: 129 LNVAHNLI-QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 448 WEGILQESQFMNLK----RLESFRLTTEPTKKF 476
               +Q   F  ++     L++ +L + P   F
Sbjct: 188 PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIF 220

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 66.9 bits (164), Expect = 4e-12
 Identities = 49/203 (24%), Positives = 71/203 (34%), Gaps = 26/203 (12%)

Query: 127 HLKYLDTLDLSLNDFEGAEIPEY-FGQLKNLRYLNLS---FSSFSGEIPPQLGSLSSLQY 182
               L  LDLS  +     I +  +  L +L  L L+     S +         LSSLQ 
Sbjct: 50  SFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAF---SGLSSLQK 104

Query: 183 LDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVE 242
           L        +N  SL         +  L +LK LN+    +        +  + L +L  
Sbjct: 105 LVAV----ETNLASLENFP-----IGHLKTLKELNVAHNLIQSFKLP--EYFSNLTNLEH 153

Query: 243 LRLHYCQLQGIPLSLPFINFTSISV----LDLSENSFNSAIPPWLFSLTSLTKLYLRWNF 298
           L L   ++Q I  +        + +    LDLS N  N  I P  F    L +L L  N 
Sbjct: 154 LDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQ 211

Query: 299 FTGHIPNEFANLKLLEVLDLSNN 321
                   F  L  L+ + L  N
Sbjct: 212 LKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 65.8 bits (161), Expect = 8e-12
 Identities = 36/197 (18%), Positives = 67/197 (34%), Gaps = 14/197 (7%)

Query: 527 TIPGDWFSKLSSEITYLILSNNQIKGKLPRQ--MNSPNLRSIDLSSNH---FEGTLPLWS 581
            +    F      +  L LS  +I+  +      +  +L ++ L+ N             
Sbjct: 42  HLGSYSFFSFPE-LQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99

Query: 582 TNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVC-NLEDLQILSIRS 640
           ++  +L   +   +  L       +  L+ L ++ N +          NL +L+ L + S
Sbjct: 100 SSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 641 NKLS----GEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIP 696
           NK+      +         +   +D+S N +    P +F  +R L  L L  N L     
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPD 217

Query: 697 CSLQNCTGLTSIDLGGN 713
                 T L  I L  N
Sbjct: 218 GIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 54/283 (19%), Positives = 87/283 (30%), Gaps = 73/283 (25%)

Query: 360 SGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSI-GNLSSLRKLD 418
              P + + LDLS N L      S  +   LQ L LS      +I      +LS L  L 
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLI 82

Query: 419 LSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVF 478
           L+ N +      +F  LS L     ++ +    L+     +LK L+   +          
Sbjct: 83  LTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNV---------- 131

Query: 479 NVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSS 538
             ++N                              + S  L             FS L++
Sbjct: 132 --AHN-----------------------------LIQSFKLPEY----------FSNLTN 150

Query: 539 EITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPL 598
            + +L LS+N+I+                +        L         L L  N  +  +
Sbjct: 151 -LEHLDLSSNKIQ---------------SIYCTDLRV-LHQMPLLNLSLDLSLNPMNF-I 192

Query: 599 PENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSN 641
                  + RL+ L L  NQL          L  LQ + + +N
Sbjct: 193 QPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.9 bits (138), Expect = 7e-09
 Identities = 46/223 (20%), Positives = 72/223 (32%), Gaps = 43/223 (19%)

Query: 663 SNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLW 722
              +    IP +     S   L LS N L      S  +   L  +DL   ++  ++   
Sbjct: 15  MELNFY-KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDG 70

Query: 723 ISENLSSFFMLRLRSNLLS---GDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALV 779
             ++LS    L L  N +          L +LQ L        N +      IG+L  L 
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV---AVETNLASLENFPIGHLKTLK 127

Query: 780 Y---GNNS-------EVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEI-- 827
                +N        E F  L                 ++  +DLS N +   I      
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNL----------------TNLEHLDLSSNKIQ-SIYCTDLR 170

Query: 828 --GNLSALHI-LNLSHNQLSGAIPQSLSSLASLSKLNLSFNNL 867
               +  L++ L+LS N ++  I         L +L L  N L
Sbjct: 171 VLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQL 212

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 88.6 bits (220), Expect = 1e-18
 Identities = 77/524 (14%), Positives = 149/524 (28%), Gaps = 105/524 (20%)

Query: 303 IPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGR 362
             + F +      +  +  +     +      L  L SLD   +++         G    
Sbjct: 11  FNDWFPDDNFASEVAAAFEMQATDTIS--EEQLATLTSLDCHNSSITD-----MTGIEK- 62

Query: 363 PNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYN 422
              L  L  +SN++   L   L    NL YL    N    ++   +  L+ L  L+   N
Sbjct: 63  LTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDSNKL-TNLD--VTPLTKLTYLNCDTN 116

Query: 423 GMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSY 482
                      KL++L  +                  L  L               N + 
Sbjct: 117 -----------KLTKLDVSQNP--------------LLTYL---------------NCAR 136

Query: 483 NWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITY 542
           N      L  I + +              T+LT +          +     ++L    T 
Sbjct: 137 N-----TLTEIDVSHN-------------TQLTELDCHLNKKITKLDVTPQTQL----TT 174

Query: 543 LILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWS-TNADELFLQDNRFSGPLPEN 601
           L  S N+I  +L     +  L  ++  +N+    L L        L    N+ +     +
Sbjct: 175 LDCSFNKIT-ELDVS-QNKLLNRLNCDTNNIT-KLDLNQNIQLTFLDCSSNKLTEI---D 228

Query: 602 IGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGID 661
           +  L  +L     S N L+  +  S   L  L  L      L  E      H+       
Sbjct: 229 VTPL-TQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLL-EIDLT--HNTQLIYFQ 281

Query: 662 ISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPL 721
                    +         L +L      ++      L     L  + L   +L+  L +
Sbjct: 282 AEGCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELDV 335

Query: 722 WISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYG 781
               + +    L   +  +  D    +  +  L+    +       +P+     ++L   
Sbjct: 336 ---SHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIA 389

Query: 782 NNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPD 825
            + ++  Q    +           + D  +  ++W NL+   P 
Sbjct: 390 VSPDLLDQFGNPMNI---EPGDGGVYDQATNTITWENLSTDNPA 430

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 84.0 bits (208), Expect = 4e-17
 Identities = 79/469 (16%), Positives = 139/469 (29%), Gaps = 108/469 (23%)

Query: 256 SLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEV 315
           ++      +++ LD   +S    +   +  LT LTKL    N  T     + +    L  
Sbjct: 35  TISEEQLATLTSLDCHNSSITD-MTG-IEKLTGLTKLICTSNNITTL---DLSQNTNLTY 89

Query: 316 LDLSNNLDLGGQLPKL-FGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSN 374
           L   +N     +L  L    L +L  L+   N L             +   L YL+ + N
Sbjct: 90  LACDSN-----KLTNLDVTPLTKLTYLNCDTNKLT-------KLDVSQNPLLTYLNCARN 137

Query: 375 SLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGK 434
           +L  E+   + +   L  L    N         +   + L  LD S+N +          
Sbjct: 138 TLT-EID--VSHNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKITELDVSQNKL 192

Query: 435 LSEL-VDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSI 493
           L+ L  D N +       L  +Q + L  L               + S N     +L  I
Sbjct: 193 LNRLNCDTNNITK-----LDLNQNIQLTFL---------------DCSSN-----KLTEI 227

Query: 494 QIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGK 553
            +                T+LT        ++  +     SKL    T L      +  +
Sbjct: 228 DVTPL-------------TQLTYFDCSVNPLT-ELDVSTLSKL----TTLHCIQTDLL-E 268

Query: 554 LPRQMNSPNLRSIDLSSNHFEGTLPLWS-TNADELFLQDNRFSGPLPENIGSLMPRLQRL 612
           +    N   L             L +   T    L  Q    +     ++    P+L  L
Sbjct: 269 IDLTHN-TQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT---ELDLSQN-PKLVYL 323

Query: 613 YLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIP 672
           YL+  +L+  +   V +   L+ LS  +  +                             
Sbjct: 324 YLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-------------------------DFS 355

Query: 673 SSFGSLRSLSVLLLSNNNLSGGIPCSLQN-----CTGLTSIDLGGNQLS 716
           S  G + +L+    +          +L N           +D  GN ++
Sbjct: 356 S-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMN 403

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 82.8 bits (205), Expect = 1e-16
 Identities = 64/492 (13%), Positives = 132/492 (26%), Gaps = 81/492 (16%)

Query: 137 SLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGS 196
           +L   +     ++F    N      +              L++L  LD +  S +     
Sbjct: 2   TLKAGQTQSFNDWFP-DDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD---- 56

Query: 197 LALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLS 256
                  +  +  L+ L  L      +  +       ++   +L  L     +L  + ++
Sbjct: 57  -------MTGIEKLTGLTKLICTSNNITTL------DLSQNTNLTYLACDSNKLTNLDVT 103

Query: 257 LPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVL 316
                 T ++ L+   N     +   +     LT L    N  T     + ++   L  L
Sbjct: 104 ----PLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLT---EIDVSHNTQLTEL 153

Query: 317 DLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSL 376
           D   N  +            +L +LD S N +        +    +   L  L+  +N++
Sbjct: 154 DCHLNKKIT---KLDVTPQTQLTTLDCSFNKIT-------ELDVSQNKLLNRLNCDTNNI 203

Query: 377 EGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLS 436
             +L   L     L +L  S N     I   +  L+ L   D S N +      +  KL+
Sbjct: 204 T-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDVSTLSKLT 257

Query: 437 EL-VDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKF-------VFNVSYNWVPPF 488
            L      L       +  +    L   ++                  + +         
Sbjct: 258 TLHCIQTDLLE-----IDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAA----- 307

Query: 489 RLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNN 548
            +  + +                 +L  + L N  ++  +     +KL      L   N 
Sbjct: 308 GITELDLSQN-------------PKLVYLYLNNTELT-ELDVSHNTKL----KSLSCVNA 349

Query: 549 QIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPR 608
            I+         P L +   +            TN                  +      
Sbjct: 350 HIQ-DFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGD 408

Query: 609 LQRLYLSWNQLS 620
                 + N ++
Sbjct: 409 GGVYDQATNTIT 420

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 80.5 bits (199), Expect = 6e-16
 Identities = 55/363 (15%), Positives = 102/363 (28%), Gaps = 51/363 (14%)

Query: 124 SLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYL 183
            +     L  L+ + N     EI         L  L+   +         +   + L  L
Sbjct: 122 DVSQNPLLTYLNCARNTLT--EID--VSHNTQLTELDCHLNKKIT--KLDVTPQTQLTTL 175

Query: 184 DLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVEL 243
           D   +  +               +S    L  LN     +  +       +N    L  L
Sbjct: 176 DCSFNKITELD------------VSQNKLLNRLNCDTNNITKLD------LNQNIQLTFL 217

Query: 244 RLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHI 303
                +L  I ++      T ++  D S N     +     +L+ LT L+          
Sbjct: 218 DCSSNKLTEIDVT----PLTQLTYFDCSVNPLTE-LDVS--TLSKLTTLHCIQTDLLE-- 268

Query: 304 PNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRP 363
             +  +   L          +            +L  LD  A  +        +    + 
Sbjct: 269 -IDLTHNTQLIYFQAEGCRKIK---ELDVTHNTQLYLLDCQAAGIT-------ELDLSQN 317

Query: 364 NNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNG 423
             L YL L++  L  EL   + +   L+ L            SS+G + +L     +   
Sbjct: 318 PKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHI--QDFSSVGKIPALNNNFEAEGQ 372

Query: 424 MNGTIPESF--GKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVS 481
                 E+     L+  V  +LL      +  E     +    +  +T E        V+
Sbjct: 373 TITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVT 432

Query: 482 YNW 484
           Y +
Sbjct: 433 YTF 435

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 64.7 bits (158), Expect = 6e-11
 Identities = 45/265 (16%), Positives = 89/265 (33%), Gaps = 38/265 (14%)

Query: 604 SLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSG-EFPNCWYHSQMFWGIDI 662
             +  L  L    + ++    + +  L  L  L   SN ++  +             +  
Sbjct: 39  EQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNITTLDLSQN----TNLTYLAC 92

Query: 663 SNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLW 722
            +N LT ++      L  L+ L    N L+      +     LT ++   N L+  + + 
Sbjct: 93  DSNKLT-NLD--VTPLTKLTYLNCDTNKLTKL---DVSQNPLLTYLNCARNTLT-EIDV- 144

Query: 723 ISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGN 782
              + +    L    N     +   +     L  +D S N  +         L+ L    
Sbjct: 145 --SHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDT 200

Query: 783 NSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQ 842
           N      +          + +  I  +  +D S N LT +I   +  L+ L   + S N 
Sbjct: 201 N-----NI-------TKLDLNQNIQ-LTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNP 244

Query: 843 LSGAIPQSLSSLASLSKLNLSFNNL 867
           L+      +S+L+ L+ L+    +L
Sbjct: 245 LT---ELDVSTLSKLTTLHCIQTDL 266

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 29/187 (15%), Positives = 58/187 (31%), Gaps = 46/187 (24%)

Query: 681 LSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLL 740
            +  + +   +      S +    LTS+D   + ++    +   E L+    L   SN +
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGI---EKLTGLTKLICTSNNI 76

Query: 741 SGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNP 800
           +  +   L    NL  +    N  +  +   +  L+ L Y                    
Sbjct: 77  T-TLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTY-------------------- 110

Query: 801 EYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKL 860
                      ++   N LT     ++     L  LN + N L+      +S    L++L
Sbjct: 111 -----------LNCDTNKLT---KLDVSQNPLLTYLNCARNTLT---EIDVSHNTQLTEL 153

Query: 861 NLSFNNL 867
           +   N  
Sbjct: 154 DCHLNKK 160

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 88.6 bits (219), Expect = 2e-18
 Identities = 56/283 (19%), Positives = 98/283 (34%), Gaps = 40/283 (14%)

Query: 152 QLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLS 211
                   NL   S +  +      L+S+  +        S  G           +  L 
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG-----------IQYLP 65

Query: 212 SLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLS 271
           ++  L L   KL       ++ +  L +L  L L   +++ +       +   +  L L 
Sbjct: 66  NVTKLFLNGNKLTD-----IKPLTNLKNLGWLFLDENKIKDLS---SLKDLKKLKSLSLE 117

Query: 272 ENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL 331
            N  +  I   L  L  L  LYL  N  T  I    + L  L+ L L +N     Q+  +
Sbjct: 118 HNGISD-ING-LVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDN-----QISDI 168

Query: 332 FGI--LRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKN 389
             +  L +L++L LS N++           +G   NL+ L+L S     +      NL  
Sbjct: 169 VPLAGLTKLQNLYLSKNHI-----SDLRALAGLK-NLDVLELFSQECLNKPINHQSNLVV 222

Query: 390 LQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESF 432
              ++ +  S     P  I +     K ++ ++    T   SF
Sbjct: 223 PNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPEFTNEVSF 263

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 85.9 bits (212), Expect = 2e-17
 Identities = 65/320 (20%), Positives = 113/320 (35%), Gaps = 42/320 (13%)

Query: 169 EIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGA 228
           +I P   + +     +L   S +                + L+S+  +      +     
Sbjct: 13  QIFP-DDAFAETIKDNLKKKSVTDAVT-----------QNELNSIDQIIANNSDIKS--- 57

Query: 229 DWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTS 288
             +Q +  LP++ +L L+  +L  I    P  N  ++  L L EN     +   L  L  
Sbjct: 58  --VQGIQYLPNVTKLFLNGNKLTDIK---PLTNLKNLGWLFLDENKIKD-LSS-LKDLKK 110

Query: 289 LTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGI--LRRLKSLDLSAN 346
           L  L L  N  +  I     +L  LE L L NN     ++  +  +  L +L +L L  N
Sbjct: 111 LKSLSLEHNGIS-DING-LVHLPQLESLYLGNN-----KITDITVLSRLTKLDTLSLEDN 163

Query: 347 NLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPS 406
            +           +G    L+ L LS N +  +L ++L  LKNL  L L          +
Sbjct: 164 QI-----SDIVPLAGLTK-LQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPIN 215

Query: 407 SIGNLSSLRKLDLSYN--GMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLE 464
              NL     +  +         I +        V  +L + + E      Q + + + +
Sbjct: 216 HQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAK 275

Query: 465 -SFRLTTEPTKKFVFNVSYN 483
             F        K V+ VSY+
Sbjct: 276 ARFHGRVTQPLKEVYTVSYD 295

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 82.1 bits (202), Expect = 3e-16
 Identities = 60/307 (19%), Positives = 108/307 (35%), Gaps = 48/307 (15%)

Query: 514 LTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHF 573
           +   I  +  I    P D F++         L    +      Q    ++  I  +++  
Sbjct: 1   MGETITVSTPIKQIFPDDAFAET----IKDNLKKKSVT-DAVTQNELNSIDQIIANNSDI 55

Query: 574 EGTLPLWS-TNADELFLQDNRFSGPLPENIGSL--MPRLQRLYLSWNQLSGRIPSSVCNL 630
           +    +    N  +LFL  N+ +     +I  L  +  L  L+L  N++   + SS+ +L
Sbjct: 56  KSVQGIQYLPNVTKLFLNGNKLT-----DIKPLTNLKNLGWLFLDENKIK-DL-SSLKDL 108

Query: 631 EDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNN 690
           + L+ LS+  N +S                DI+              L  L  L L NN 
Sbjct: 109 KKLKSLSLEHNGIS----------------DING----------LVHLPQLESLYLGNNK 142

Query: 691 LSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCN 750
           ++      L   T L ++ L  NQ+S  +PL     L+    L L  N +S D+   L  
Sbjct: 143 IT--DITVLSRLTKLDTLSLEDNQISDIVPL---AGLTKLQNLYLSKNHIS-DLRA-LAG 195

Query: 751 LQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVN 810
           L+NL +++L              NL       N++        +    + E  N+   + 
Sbjct: 196 LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLP 255

Query: 811 SIDLSWN 817
                 +
Sbjct: 256 EFTNEVS 262

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 80.2 bits (197), Expect = 1e-15
 Identities = 60/328 (18%), Positives = 113/328 (34%), Gaps = 79/328 (24%)

Query: 543 LILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWS-TNADELFLQDNRFSGPLPEN 601
            I  +  IK ++            +L        +      + D++   ++        +
Sbjct: 4   TITVSTPIK-QIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-----S 57

Query: 602 IGSL--MPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWG 659
           +  +  +P + +L+L+ N+L+  I   + NL++L  L +  NK+                
Sbjct: 58  VQGIQYLPNVTKLFLNGNKLT-DI-KPLTNLKNLGWLFLDENKIK--------------- 100

Query: 660 IDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSL 719
            D+S+             L+ L  L L +N +S  I   L +   L S+ LG N+++   
Sbjct: 101 -DLSS----------LKDLKKLKSLSLEHNGISD-IN-GLVHLPQLESLYLGNNKITDIT 147

Query: 720 PLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALV 779
            L     L+    L L  N +S DI   L  L  L  + LS N+        I +L AL 
Sbjct: 148 VL---SRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNH--------ISDLRALA 194

Query: 780 YGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLS 839
              N +V                         ++L       +  +   NL   + +  +
Sbjct: 195 GLKNLDV-------------------------LELFSQECLNKPINHQSNLVVPNTVKNT 229

Query: 840 HNQLSGAIPQSLSSLASLSKLNLSFNNL 867
              L    P+ +S      K N+ ++  
Sbjct: 230 DGSLV--TPEIISDDGDYEKPNVKWHLP 255

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.1 bits (176), Expect = 4e-13
 Identities = 59/259 (22%), Positives = 99/259 (38%), Gaps = 39/259 (15%)

Query: 123 PSLLHLKYLDTLDLSLN---DFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSS 179
            +   L  +D +  + +     +G         L N+  L L+ +  + +I P L +L +
Sbjct: 37  VTQNELNSIDQIIANNSDIKSVQG------IQYLPNVTKLFLNGNKLT-DIKP-LTNLKN 88

Query: 180 LQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPS 239
           L +L L       N        ++L+ L  L  LK L+L    +       +  +  LP 
Sbjct: 89  LGWLFL-----DEN------KIKDLSSLKDLKKLKSLSLEHNGISD-----INGLVHLPQ 132

Query: 240 LVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFF 299
           L  L L   ++  I         T +  L L +N  +  I P L  LT L  LYL  N  
Sbjct: 133 LESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKN-- 185

Query: 300 TGHIPN--EFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFD 357
             HI +    A LK L+VL+L +  +   +       L    ++  +  +L        D
Sbjct: 186 --HISDLRALAGLKNLDVLELFSQ-ECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDD 242

Query: 358 GFSGRPNNLEYLDLSSNSL 376
           G   +PN   +L   +N +
Sbjct: 243 GDYEKPNVKWHLPEFTNEV 261

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 68.6 bits (167), Expect = 5e-12
 Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 47/219 (21%)

Query: 660 IDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSL 719
            ++   S+T ++      L S+  ++ +N+++   +   +Q    +T + L GN+L+   
Sbjct: 26  DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQG-IQYLPNVTKLFLNGNKLTDIK 81

Query: 720 PLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALV 779
           PL    NL +   L L  N +  D+   L +L+ L  + L HN         I +++ L 
Sbjct: 82  PL---TNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNG--------ISDINGL- 127

Query: 780 YGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLS 839
                    QL                    S+ L  N +T      +  L+ L  L+L 
Sbjct: 128 -----VHLPQL-------------------ESLYLGNNKIT--DITVLSRLTKLDTLSLE 161

Query: 840 HNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSLPNFN 878
            NQ+S  +P  L+ L  L  L LS N+++  + +L    
Sbjct: 162 DNQISDIVP--LAGLTKLQNLYLSKNHIS-DLRALAGLK 197

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.1 bits (163), Expect = 1e-11
 Identities = 45/290 (15%), Positives = 85/290 (29%), Gaps = 79/290 (27%)

Query: 586 ELFLQDNRFS--GPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKL 643
           E            P             +  L    ++     +   L  +  +   ++ +
Sbjct: 3   ETITVSTPIKQIFPDDA-----FAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDI 55

Query: 644 SGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCT 703
                             +               L +++ L L+ N L+   P  L N  
Sbjct: 56  K----------------SVQG----------IQYLPNVTKLFLNGNKLTDIKP--LTNLK 87

Query: 704 GLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNN 763
            L  + L  N++     L   ++L     L L  N +S DI   L +L  L  + L +N 
Sbjct: 88  NLGWLFLDENKIKDLSSL---KDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNK 142

Query: 764 FSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQI 823
            +      +  L+ L                               +++ L  N ++   
Sbjct: 143 ITDITV--LSRLTKL-------------------------------DTLSLEDNQISDI- 168

Query: 824 PDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPS 873
              +  L+ L  L LS N +S    ++L+ L +L  L L       K  +
Sbjct: 169 -VPLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPIN 215

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 84.2 bits (209), Expect = 3e-17
 Identities = 66/329 (20%), Positives = 106/329 (32%), Gaps = 40/329 (12%)

Query: 131 LDTLDLSLNDF--EGAE-IPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSL-----SSLQY 182
           +  L L        G   +      L  L+ L+LS +         L          L+ 
Sbjct: 87  IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEK 146

Query: 183 LDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAV--NMLPSL 240
           L L   S S+ S            L      K L +    ++  G   L     +    L
Sbjct: 147 LQLEYCSLSAASCEPLASV-----LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQL 201

Query: 241 VELRLHYCQL---QGIPLSLPFINFTSISVLDLSENSFNSA-----IPPWLFSLTSLTKL 292
             L+L  C +       L     +  S+  L L  N           P  L   + L  L
Sbjct: 202 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261

Query: 293 YLRWNFFT----GHIPNEFANLKLLEVLDLSNNL--DLGGQL--PKLFGILRRLKSLDLS 344
           ++     T    G +       + L+ L L+ N   D G +L    L     +L+SL + 
Sbjct: 262 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321

Query: 345 ANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLG-----NLKNLQYLRLSGNS 399
           + +        F     +   L  L +S+N LE    + L          L+ L L+   
Sbjct: 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381

Query: 400 F----WGSIPSSIGNLSSLRKLDLSYNGM 424
                  S+ +++    SLR+LDLS N +
Sbjct: 382 VSDSSCSSLAATLLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 78.1 bits (193), Expect = 4e-15
 Identities = 57/326 (17%), Positives = 102/326 (31%), Gaps = 37/326 (11%)

Query: 131 LDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGE----IPPQLGSLSSLQYLDLY 186
           + +LD+   +   A   E    L+  + + L     +      I   L    +L  L+L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 187 ADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWL-QAVNMLPSLVELRL 245
             +   + G   +  Q L   +    ++ L+L    L   G   L   +  LP+L EL L
Sbjct: 65  -SNELGDVGVHCV-LQGL--QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 246 HYCQLQGIPLSL----PFINFTSISVLDLSENSFNS----AIPPWLFSLTSLTKLYLRWN 297
               L    L L           +  L L   S ++     +   L +     +L +  N
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 298 FFTG----HIPNEFANLKL-LEVLDLSNNLDLGGQ----LPKLFGILRRLKSLDLSANNL 348
                    +     +    LE L L +   +       L  +      L+ L L +N L
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNKL 239

Query: 349 NGE-VHEFFDGFSGRPNNLEYLDLSSNSLEGE----LPKSLGNLKNLQYLRLSGNSFWGS 403
               + E   G     + L  L +    +  +    L + L   ++L+ L L+GN     
Sbjct: 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299

Query: 404 IPSSIGNL-----SSLRKLDLSYNGM 424
               +          L  L +     
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSCSF 325

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 76.5 bits (189), Expect = 1e-14
 Identities = 59/300 (19%), Positives = 103/300 (34%), Gaps = 39/300 (13%)

Query: 154 KNLRYLNLSFSSFSGEIPPQLGS-LSSLQYLDLYADSFSSNSGSLALHAQNL-NWLSGLS 211
            +++ L++     S     +L   L   Q + L     +          +++ + L    
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA------RCKDISSALRVNP 56

Query: 212 SLKLLNLGFVKLDHVGADWLQAVNMLPS--LVELRLHYCQL--QGI-PLSLPFINFTSIS 266
           +L  LNL   +L  VG   +      PS  + +L L  C L   G   LS       ++ 
Sbjct: 57  ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ 116

Query: 267 VLDLSENSFNSAIPPWLFSL-----TSLTKLYLRWNFFT----GHIPNEFANLKLLEVLD 317
            L LS+N    A    L          L KL L +   +      + +        + L 
Sbjct: 117 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176

Query: 318 LSNNL--DLGGQLPKLFGILR----RLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDL 371
           +SNN   + G ++  L   L+    +L++L L +  +  +      G      +L  L L
Sbjct: 177 VSNNDINEAGVRV--LCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234

Query: 372 SSNSLEGELPKSLGN-----LKNLQYLRLSGNSF----WGSIPSSIGNLSSLRKLDLSYN 422
            SN L       L          L+ L +          G +   +    SL++L L+ N
Sbjct: 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 75.4 bits (186), Expect = 3e-14
 Identities = 78/462 (16%), Positives = 149/462 (32%), Gaps = 84/462 (18%)

Query: 313 LEVLDLSNNLDLGGQ-LPKLFGILRRLKSLDLSANNLNGE-VHEFFDGFSGRPNNLEYLD 370
           ++ LD+    +L      +L  +L++ + + L    L      +        P  L  L+
Sbjct: 5   IQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPA-LAELN 62

Query: 371 LSSNSLEGELPKSLGN-LKN----LQYLRLSGNSF----WGSIPSSIGNLSSLRKLDLSY 421
           L SN L       +   L+     +Q L L          G + S++  L +L++L LS 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 422 NGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVS 481
           N +          L E            G+L     +   +LE   L+    +     + 
Sbjct: 123 NLLG---DAGLQLLCE------------GLLDPQCRLEKLQLEYCSLSAASCEPLASVLR 167

Query: 482 YNWVPPFRLKSIQIENCQVGPS-----FPVWLQVQTELTSVILRNVGISDTIPGDWFSKL 536
                    K + + N  +  +              +L ++ L + G++     D    +
Sbjct: 168 AKP----DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223

Query: 537 SS--EITYLILSNNQIKGK----LPRQMNSPN--LRSIDLSSNHF--EGTLPL-----WS 581
           +S   +  L L +N++       L   +  P+  LR++ +       +G   L       
Sbjct: 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 283

Query: 582 TNADELFLQDNRFSGP----LPENIGSLMPRLQRLYLSWNQLSGR----IPSSVCNLEDL 633
            +  EL L  N         L E +     +L+ L++     +        S +     L
Sbjct: 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343

Query: 634 QILSIRSNKLSGE----------FPNCWYHSQMFWGIDISNNSLT----GSIPSSFGSLR 679
             L I +N+L              P           + +++  ++     S+ ++  +  
Sbjct: 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRV-----LWLADCDVSDSSCSSLAATLLANH 398

Query: 680 SLSVLLLSNNNLSGGIPCSL-----QNCTGLTSIDLGGNQLS 716
           SL  L LSNN L       L     Q    L  + L     S
Sbjct: 399 SLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 72.7 bits (179), Expect = 2e-13
 Identities = 66/333 (19%), Positives = 103/333 (30%), Gaps = 40/333 (12%)

Query: 127 HLKYLDTLDLSLNDF--EGAE-IPEYFGQLKNLRYLNLSFSSFSGE----IPPQLGSLS- 178
            L+    + L          + I         L  LNL  +         +   L + S 
Sbjct: 26  LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC 85

Query: 179 SLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLP 238
            +Q L L     +     +         L  L +L+ L+L    L   G   L    + P
Sbjct: 86  KIQKLSLQNCCLTGAGCGVLSST-----LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDP 140

Query: 239 --SLVELRLHYCQLQ---GIPLSLPFINFTSISVLDLSENSFN----SAIPPWLFSLT-S 288
              L +L+L YC L      PL+           L +S N  N      +   L      
Sbjct: 141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ 200

Query: 289 LTKLYLRWNFFT----GHIPNEFANLKLLEVLDLSNN--LDLGGQL--PKLFGILRRLKS 340
           L  L L     T      +    A+   L  L L +N   D+G     P L     RL++
Sbjct: 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 260

Query: 341 LDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNL-----KNLQYLRL 395
           L +    +  +             +L+ L L+ N L  E  + L          L+ L +
Sbjct: 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320

Query: 396 SGNSF----WGSIPSSIGNLSSLRKLDLSYNGM 424
              SF         S +     L +L +S N +
Sbjct: 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 66.9 bits (164), Expect = 1e-11
 Identities = 72/447 (16%), Positives = 138/447 (30%), Gaps = 85/447 (19%)

Query: 365 NLEYLDLSSNSLEGE-LPKSLGNLKNLQYLRLSGNSF----WGSIPSSIGNLSSLRKLDL 419
           +++ LD+    L      + L  L+  Q +RL            I S++    +L +L+L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 420 SYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLK-RLESFRLTTEPTKKFVF 478
             N +          + +              LQ       K  L++  LT         
Sbjct: 64  RSNELG---DVGVHCVLQ-------------GLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107

Query: 479 NVSYNWVPPFRLKSIQIENCQVGPS-----FPVWLQVQTELTSVILRNVGISDTIPGDWF 533
            +         L+ + + +  +G +         L  Q  L  + L    +S        
Sbjct: 108 TLRTL----PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163

Query: 534 SKLSS--EITYLILSNNQIKGK----LPRQMNSPN--LRSIDLSSNHF--EGTLPL---- 579
           S L +  +   L +SNN I       L + +      L ++ L S     +    L    
Sbjct: 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223

Query: 580 -WSTNADELFLQDNRFSGP----LPENIGSLMPRLQRLYLSWNQLSGR----IPSSVCNL 630
               +  EL L  N+        L   +     RL+ L++    ++ +    +   +   
Sbjct: 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 283

Query: 631 EDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNN 690
           E L+ LS+  N+L                 D     L  ++      L SL    + + +
Sbjct: 284 ESLKELSLAGNELG----------------DEGARLLCETLLEPGCQLESLW---VKSCS 324

Query: 691 LSG----GIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFF----MLRLRSNLLS- 741
            +          L     L  + +  N+L  +    + + L        +L L    +S 
Sbjct: 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384

Query: 742 ---GDIPQRLCNLQNLHIIDLSHNNFS 765
                +   L    +L  +DLS+N   
Sbjct: 385 SSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 64.2 bits (157), Expect = 9e-11
 Identities = 61/298 (20%), Positives = 95/298 (31%), Gaps = 33/298 (11%)

Query: 125 LLHLKYLDTLDLSLNDFEGAEIPEYFGQLK----NLRYLNLSFSSFSGE----IPPQLGS 176
           L        L +S ND   A +      LK     L  L L     + +    +   + S
Sbjct: 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS 225

Query: 177 LSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWL-QAVN 235
            +SL+ L L ++    + G   L       L   S L+ L +    +   G   L + + 
Sbjct: 226 KASLRELALGSNKLG-DVGMAELCPG---LLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281

Query: 236 MLPSLVELRLHYCQL-----QGIPLSLPFINFTSISVLDLSENSFNS----AIPPWLFSL 286
              SL EL L   +L     + +  +L       +  L +   SF +         L   
Sbjct: 282 AKESLKELSLAGNELGDEGARLLCETLLEPG-CQLESLWVKSCSFTAACCSHFSSVLAQN 340

Query: 287 TSLTKLYLRWNFFTGHIPNEFA-----NLKLLEVLDLSNNL--DLGGQ-LPKLFGILRRL 338
             L +L +  N        E          +L VL L++    D     L         L
Sbjct: 341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400

Query: 339 KSLDLSANNLNGE-VHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGN-LKNLQYLR 394
           + LDLS N L    + +  +        LE L L       E+   L    K+   LR
Sbjct: 401 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLR 458

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 63.1 bits (154), Expect = 2e-10
 Identities = 61/302 (20%), Positives = 103/302 (34%), Gaps = 38/302 (12%)

Query: 131 LDTLDLSLNDF--EGAE-IPEYFGQLKNLRYLNLSFSSFSGEIPPQLG-----SLSSLQY 182
           L+ L L          E +        + + L +S +  +      L      S   L+ 
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA 203

Query: 183 LDLYADSFSSNSGSLALHAQNL-NWLSGLSSLKLLNLGFVKLDHVGADWLQAV--NMLPS 239
           L L +   +S++       ++L   ++  +SL+ L LG  KL  VG   L     +    
Sbjct: 204 LKLESCGVTSDN------CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR 257

Query: 240 LVELRLHYCQLQ---GIPLSLPFINFTSISVLDLSENSFNSAIPPWL-----FSLTSLTK 291
           L  L +  C +       L        S+  L L+ N         L          L  
Sbjct: 258 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 317

Query: 292 LYLRWNFFTG----HIPNEFANLKLLEVLDLSNNL--DLGGQL--PKLFGILRRLKSLDL 343
           L+++   FT     H  +  A  + L  L +SNN   D G +     L      L+ L L
Sbjct: 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 377

Query: 344 SANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGE----LPKSLGNLK-NLQYLRLSGN 398
           +  +++              ++L  LDLS+N L       L +S+      L+ L L   
Sbjct: 378 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 437

Query: 399 SF 400
            +
Sbjct: 438 YW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 62.3 bits (152), Expect = 3e-10
 Identities = 75/438 (17%), Positives = 153/438 (34%), Gaps = 92/438 (21%)

Query: 490 LKSIQIENCQVGPS-FPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSS--EITYLILS 546
           ++S+ I+  ++  + +   L +  +   V L + G+++    D  S L     +  L L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 547 NNQIKGK----LPRQMNSPN--LRSIDLSSNHF--EGTLPLWS-----TNADELFLQDNR 593
           +N++       + + + +P+  ++ + L +      G   L S         EL L DN 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 594 FSGP----LPENIGSLMPRLQRLYLSWNQLSGR----IPSSVCNLEDLQILSIRSNKLSG 645
                   L E +     RL++L L +  LS      + S +    D + L++ +N ++ 
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184

Query: 646 E----------FPNCWYHSQMFWGIDISNNSLT----GSIPSSFGSLRSLSVLLLSNNNL 691
                         C   +     + + +  +T      +     S  SL  L L +N L
Sbjct: 185 AGVRVLCQGLKDSPCQLEA-----LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239

Query: 692 SGG-----IPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLR---LRSNLLSGD 743
                    P  L   + L ++ +    ++      +   L +   L+   L  N L  +
Sbjct: 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299

Query: 744 IPQRLCNL-----QNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGR 798
             + LC         L  + +   +F+     C  + S+++  N                
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSCSFT---AACCSHFSSVLAQNRF-------------- 342

Query: 799 NPEYSNIIADVNSIDLSWNNLTGQIPDEIG-----NLSALHILNLSHNQLS----GAIPQ 849
                     +  + +S N L      E+        S L +L L+   +S     ++  
Sbjct: 343 ----------LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA 392

Query: 850 SLSSLASLSKLNLSFNNL 867
           +L +  SL +L+LS N L
Sbjct: 393 TLLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 61.9 bits (151), Expect = 5e-10
 Identities = 59/327 (18%), Positives = 107/327 (32%), Gaps = 72/327 (22%)

Query: 581 STNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGR----IPSSVCNLEDLQIL 636
           S +   L +Q    S      +  L+ + Q + L    L+      I S++     L  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 637 SIRSNKLSGE----------FPNCWYHSQMFWGIDISNNSLT----GSIPSSFGSLRSLS 682
           ++RSN+L              P+C         + + N  LT    G + S+  +L +L 
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQK-----LSLQNCCLTGAGCGVLSSTLRTLPTLQ 116

Query: 683 VLLLSNNNLSGG-----IPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLR--- 734
            L LS+N L            L     L  + L    LS +    ++  L +    +   
Sbjct: 117 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176

Query: 735 LRSNLLSGDIPQRLC-----NLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQ 789
           + +N ++    + LC     +   L  + L     +        +L  +V    S     
Sbjct: 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT---SDNCRDLCGIVASKAS----- 228

Query: 790 LIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQ-----IPDEIGNLSALHILNLSHNQLS 844
                              +  + L  N L         P  +   S L  L +    ++
Sbjct: 229 -------------------LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 269

Query: 845 ----GAIPQSLSSLASLSKLNLSFNNL 867
               G + + L +  SL +L+L+ N L
Sbjct: 270 AKGCGDLCRVLRAKESLKELSLAGNEL 296

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 60.4 bits (147), Expect = 2e-09
 Identities = 71/440 (16%), Positives = 137/440 (31%), Gaps = 90/440 (20%)

Query: 489 RLKSIQIENCQVGP----SFPVWLQVQTELTSVILRNVGISDT---IPGDWFSKLSSEIT 541
           + + +++++C +           L+V   L  + LR+  + D             S +I 
Sbjct: 29  QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQ 88

Query: 542 YLILSNNQIKGKLPRQM-----NSPNLRSIDLSSNHF---------EGTLPLWSTNADEL 587
            L L N  + G     +       P L+ + LS N           EG L       ++L
Sbjct: 89  KLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDP-QCRLEKL 147

Query: 588 FLQDNRFSGPLPENIGSL---MPRLQRLYLSWNQLSGRIPSSVC-----NLEDLQILSIR 639
            L+    S    E + S+    P  + L +S N ++      +C     +   L+ L + 
Sbjct: 148 QLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE 207

Query: 640 SNKLSGEFPNCWYHSQMFWG------IDISNNSLTGS-----IPSSFGSLRSLSVLLLSN 688
           S  ++ +  NC     +         + + +N L         P        L  L +  
Sbjct: 208 SCGVTSD--NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265

Query: 689 NNLS----GGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFF----MLRLRSNLL 740
             ++    G +   L+    L  + L GN+L       + E L         L ++S   
Sbjct: 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325

Query: 741 SGD----IPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVK 796
           +          L   + L  + +S+N    A  R +     L    +             
Sbjct: 326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC--QGLGQPGSV------------ 371

Query: 797 GRNPEYSNIIADVNSIDLSWNNLTGQ----IPDEIGNLSALHILNLSHNQLSGAIPQSLS 852
                       +  + L+  +++      +   +    +L  L+LS+N L  A    L 
Sbjct: 372 ------------LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 419

Query: 853 SL-----ASLSKLNLSFNNL 867
                    L +L L     
Sbjct: 420 ESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.7 bits (135), Expect = 4e-08
 Identities = 75/541 (13%), Positives = 152/541 (28%), Gaps = 149/541 (27%)

Query: 388 KNLQYLRLSGNSF-WGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQN 446
            ++Q L +             +  L   + + L   G+          +S      L  N
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT---EARCKDISSA----LRVN 55

Query: 447 SWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNW--------------VPPFRLKS 492
                        L  L               N+  N                P  +++ 
Sbjct: 56  P-----------ALAEL---------------NLRSNELGDVGVHCVLQGLQTPSCKIQK 89

Query: 493 IQIENCQVGP----SFPVWLQVQTELTSVILRNVGISDT---IPGDWFSKLSSEITYLIL 545
           + ++NC +           L+    L  + L +  + D    +  +        +  L L
Sbjct: 90  LSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQL 149

Query: 546 SNNQIKGKLPRQM-----NSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPE 600
               +       +       P+ + + +S+N                 + +      L +
Sbjct: 150 EYCSLSAASCEPLASVLRAKPDFKELTVSNND----------------INEAGVRV-LCQ 192

Query: 601 NIGSLMPRLQRLYLSWNQLSGR----IPSSVCNLEDLQILSIRSNKLSGE---------- 646
            +     +L+ L L    ++      +   V +   L+ L++ SNKL             
Sbjct: 193 GLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL 252

Query: 647 FPNCWYHSQMFWGIDISNNSLT----GSIPSSFGSLRSLSVLLLSNNNLSG----GIPCS 698
            P+    +     + I    +T    G +     +  SL  L L+ N L       +  +
Sbjct: 253 HPSSRLRT-----LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET 307

Query: 699 LQNC-TGLTSIDLGGNQLSGSLPLWISENLSSFFMLR---LRSNLLSGDIPQRLC----- 749
           L      L S+ +     + +     S  L+    L    + +N L     + LC     
Sbjct: 308 LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ 367

Query: 750 NLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADV 809
               L ++ L+  + S +      +L+A +  N+S                        +
Sbjct: 368 PGSVLRVLWLADCDVSDS---SCSSLAATLLANHS------------------------L 400

Query: 810 NSIDLSWNNLTGQIPDEIG-----NLSALHILNLSHNQLSGAIPQSLSSLA----SLSKL 860
             +DLS N L      ++          L  L L     S  +   L +L     SL  +
Sbjct: 401 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460

Query: 861 N 861
           +
Sbjct: 461 S 461

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 81.6 bits (202), Expect = 3e-17
 Identities = 62/217 (28%), Positives = 93/217 (42%), Gaps = 20/217 (9%)

Query: 261 NFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSN 320
           N    SV D S     +AIP  +       KL L+ N  +      F  L  L +L L++
Sbjct: 15  NNNKNSV-DCSSKKL-TAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND 70

Query: 321 NLDLGGQLPKL----FGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSL 376
           N     +L  L    F  L+ L++L ++ N L       FD       NL  L L  N L
Sbjct: 71  N-----KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQ----LVNLAELRLDRNQL 121

Query: 377 EGELPKSLGNLKNLQYLRLSGNSFWGSIPSSI-GNLSSLRKLDLSYNGMNGTIPESFGKL 435
           +   P+   +L  L YL L  N    S+P  +   L+SL++L L  N +      +F KL
Sbjct: 122 KSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180

Query: 436 SELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEP 472
           +EL    L  N  + +  E  F +L++L+  +L   P
Sbjct: 181 TELKTLKLDNNQLKRV-PEGAFDSLEKLKMLQLQENP 216

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 63/212 (29%), Positives = 84/212 (39%), Gaps = 26/212 (12%)

Query: 247 YCQ---LQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLF-SLTSLTKLYLRWNFFTGH 302
            C    L  IP ++P         LDL  N   S++P   F  LT L  LYL  N     
Sbjct: 22  DCSSKKLTAIPSNIP----ADTKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQTL 76

Query: 303 IPNEFANLKLLEVLDLSNNLDLGGQL----PKLFGILRRLKSLDLSANNLNGEVHEFFDG 358
               F  LK LE L +++N     +L      +F  L  L  L L  N L       FD 
Sbjct: 77  PAGIFKELKNLETLWVTDN-----KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS 131

Query: 359 FSGRPNNLEYLDLSSNSLEGELPKSL-GNLKNLQYLRLSGNSFWGSIPSSI-GNLSSLRK 416
            +     L YL L  N L+  LPK +   L +L+ LRL  N     +P      L+ L+ 
Sbjct: 132 LT----KLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKT 185

Query: 417 LDLSYNGMNGTIPESFGKLSELVDANLLQNSW 448
           L L  N +      +F  L +L    L +N W
Sbjct: 186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 66.2 bits (162), Expect = 6e-12
 Identities = 51/193 (26%), Positives = 77/193 (39%), Gaps = 16/193 (8%)

Query: 155 NLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLK 214
           + + L+L  +  S         L+ L+ L L  +   +    +            L +L+
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI---------FKELKNLE 88

Query: 215 LLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENS 274
            L +   KL  +        + L +L ELRL   QL+ +P  + F + T ++ L L  N 
Sbjct: 89  TLWVTDNKLQALPIG---VFDQLVNLAELRLDRNQLKSLPPRV-FDSLTKLTYLSLGYNE 144

Query: 275 FNSAIPPWLF-SLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFG 333
             S +P  +F  LTSL +L L  N         F  L  L+ L L NN  L       F 
Sbjct: 145 LQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFD 202

Query: 334 ILRRLKSLDLSAN 346
            L +LK L L  N
Sbjct: 203 SLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 65.8 bits (161), Expect = 7e-12
 Identities = 55/206 (26%), Positives = 81/206 (39%), Gaps = 38/206 (18%)

Query: 541 TYLILSNNQIKGKLPRQ--MNSPNLRSIDLSSNHFEGTLPLWS----TNADELFLQDNRF 594
             L L +N++   LP +       LR + L+ N  + TLP        N + L++ DN+ 
Sbjct: 40  KKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL 97

Query: 595 SGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVC-NLEDLQILSIRSNKLSGEFPNCWYH 653
              LP  +   +  L  L L  NQL   +P  V  +L  L  LS+  N+L          
Sbjct: 98  QA-LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ--------- 146

Query: 654 SQMFWGIDISNNSLTGSIPS-SFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGG 712
                           S+P   F  L SL  L L NN L      +    T L ++ L  
Sbjct: 147 ----------------SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190

Query: 713 NQLSGSLPLWISENLSSFFMLRLRSN 738
           NQL   +P    ++L    ML+L+ N
Sbjct: 191 NQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 48/198 (24%), Positives = 69/198 (34%), Gaps = 44/198 (22%)

Query: 127 HLKYLDTLDLSLNDFEGAEIPEY-FGQLKNLRYLNLSFSSFSGEIPPQL-GSLSSLQYLD 184
            L  L  L L+ N  +   +P   F +LKNL  L ++ +     +P  +   L +L  L 
Sbjct: 59  RLTKLRLLYLNDNKLQ--TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELR 115

Query: 185 LYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELR 244
           L                   N L  L                     +  + L  L  L 
Sbjct: 116 LDR-----------------NQLKSLPP-------------------RVFDSLTKLTYLS 139

Query: 245 LHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLF-SLTSLTKLYLRWNFFTGHI 303
           L Y +LQ +P  + F   TS+  L L  N     +P   F  LT L  L L  N      
Sbjct: 140 LGYNELQSLPKGV-FDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVP 197

Query: 304 PNEFANLKLLEVLDLSNN 321
              F +L+ L++L L  N
Sbjct: 198 EGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 54.2 bits (131), Expect = 5e-08
 Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 21/182 (11%)

Query: 609 LQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWG------IDI 662
            ++L L  N+LS     +   L  L++L +  NKL    P     + +F        + +
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLP-----AGIFKELKNLETLWV 92

Query: 663 SNNSLTGSIPSS-FGSLRSLSVLLLSNN---NLSGGIPCSLQNCTGLTSIDLGGNQLSGS 718
           ++N L  ++P   F  L +L+ L L  N   +L   +  SL   T LT + LG N+L  S
Sbjct: 93  TDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL---TKLTYLSLGYNELQ-S 147

Query: 719 LPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSAL 778
           LP  + + L+S   LRL +N L          L  L  + L +N           +L  L
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207

Query: 779 VY 780
             
Sbjct: 208 KM 209

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 56/236 (23%), Positives = 80/236 (33%), Gaps = 48/236 (20%)

Query: 663 SNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLW 722
           S+  LT +IPS          L L +N LS     +    T L  + L  N+L  +LP  
Sbjct: 24  SSKKLT-AIPS--NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAG 79

Query: 723 ISENLSSFFMLRLRSNLLS---GDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALV 779
           I + L +   L +  N L      +  +L NL  L    L  N    ++P          
Sbjct: 80  IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR---LDRNQLK-SLP---------- 125

Query: 780 YGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEI-GNLSALHILNL 838
                 VF  L                  +  + L +N L   +P  +   L++L  L L
Sbjct: 126 ----PRVFDSL----------------TKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRL 164

Query: 839 SHNQLSGAIPQSLSSLASLSKLNLSFNNL----AGKIPSLPNFNDPSIYEGNPLLC 890
            +NQL      +   L  L  L L  N L     G   SL       +   NP  C
Sbjct: 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ-ENPWDC 219

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 54/217 (24%), Positives = 87/217 (40%), Gaps = 39/217 (17%)

Query: 360 SGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSI-GNLSSLRKLD 418
           S  P + + LDL SN L     K+   L  L+ L L+ N    ++P+ I   L +L  L 
Sbjct: 33  SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLW 91

Query: 419 LSYNGMNGTIPES-FGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFV 477
           ++ N +   +P   F +L  L +  L +N  +  L    F +L +L    L         
Sbjct: 92  VTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSL--------- 140

Query: 478 FNVSYNWVPPFRLKSIQIENCQVGPSFPVWL-QVQTELTSVILRNVGISDTIPGDWFSKL 536
               YN      L+S+           P  +    T L  + L N  +   +P   F KL
Sbjct: 141 ---GYN-----ELQSL-----------PKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKL 180

Query: 537 SSEITYLILSNNQIKGKLPRQM--NSPNLRSIDLSSN 571
           +  +  L L NNQ+K ++P     +   L+ + L  N
Sbjct: 181 TE-LKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 82.0 bits (203), Expect = 5e-17
 Identities = 53/235 (22%), Positives = 86/235 (36%), Gaps = 29/235 (12%)

Query: 237 LPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRW 296
           L + +++      +          +   I+ L        + I   +  L +L  L L+ 
Sbjct: 18  LANAIKIAAGKSNVTDTV---TQADLDGITTLSAFGTGVTT-IEG-VQYLNNLIGLELKD 72

Query: 297 NFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGI--LRRLKSLDLSANNLNGEVHE 354
           N  T  +     NL  +  L+LS N      L  +  I  L+ +K+LDL++  +      
Sbjct: 73  NQIT-DLAP-LKNLTKITELELSGN-----PLKNVSAIAGLQSIKTLDLTSTQITD---- 121

Query: 355 FFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSL 414
                +G  N L+ L L  N +   +   L  L NLQYL +       S  + + NLS L
Sbjct: 122 -VTPLAGLSN-LQVLYLDLNQIT-NIS-PLAGLTNLQYLSIGNAQV--SDLTPLANLSKL 175

Query: 415 RKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLT 469
             L    N +  +       L  L++ +L  N    I   S   N   L    LT
Sbjct: 176 TTLKADDNKI--SDISPLASLPNLIEVHLKNN---QISDVSPLANTSNLFIVTLT 225

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 80.5 bits (199), Expect = 1e-16
 Identities = 51/305 (16%), Positives = 107/305 (35%), Gaps = 43/305 (14%)

Query: 125 LLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLD 184
              L     +    ++            L  +  L+   +  +  I   +  L++L  L+
Sbjct: 15  DPALANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLE 69

Query: 185 LYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELR 244
           L  +  +           +L  L  L+ +  L L    L +     + A+  L S+  L 
Sbjct: 70  LKDNQIT-----------DLAPLKNLTKITELELSGNPLKN-----VSAIAGLQSIKTLD 113

Query: 245 LHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIP 304
           L   Q+  +    P    +++ VL L  N   + I P L  LT+L  L +     +  + 
Sbjct: 114 LTSTQITDVT---PLAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVS-DLT 167

Query: 305 NEFANLKLLEVLDLSNNLDLGGQLPKLFGI--LRRLKSLDLSANNLNGEVHEFFDGFSGR 362
              ANL  L  L   +N     ++  +  +  L  L  + L  N ++          +  
Sbjct: 168 P-LANLSKLTTLKADDN-----KISDISPLASLPNLIEVHLKNNQISD-----VSPLANT 216

Query: 363 PNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYN 422
             NL  + L++ ++  +      NL     ++    +     P++I +  +    +L++N
Sbjct: 217 S-NLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP--IAPATISDNGTYASPNLTWN 273

Query: 423 GMNGT 427
             +  
Sbjct: 274 LTSFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 74.0 bits (182), Expect = 3e-14
 Identities = 51/258 (19%), Positives = 95/258 (36%), Gaps = 30/258 (11%)

Query: 512 TELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSN 571
                +      ++DT+     + L   IT L      +   +       NL  ++L  N
Sbjct: 19  ANAIKIAAGKSNVTDTVT---QADLDG-ITTLSAFGTGVT-TIEGVQYLNNLIGLELKDN 73

Query: 572 HFEGTLPLWS-TNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNL 630
                 PL + T   EL L  N         I  L   ++ L L+  Q++    + +  L
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNV--SAIAGL-QSIKTLDLTSTQITD--VTPLAGL 128

Query: 631 EDLQILSIRSNKLS-----GEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLL 685
            +LQ+L +  N+++         N  Y       + I N  ++  + +   +L  L+ L 
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQY-------LSIGNAQVS-DL-TPLANLSKLTTLK 179

Query: 686 LSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIP 745
             +N +S  I   L +   L  + L  NQ+S   PL    N S+ F++ L +  ++    
Sbjct: 180 ADDNKISD-IS-PLASLPNLIEVHLKNNQISDVSPL---ANTSNLFIVTLTNQTITNQPV 234

Query: 746 QRLCNLQNLHIIDLSHNN 763
               NL   +++      
Sbjct: 235 FYNNNLVVPNVVKGPSGA 252

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.0 bits (177), Expect = 1e-13
 Identities = 66/364 (18%), Positives = 120/364 (32%), Gaps = 79/364 (21%)

Query: 518 ILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTL 577
           I +   I+   P    +        +    + +      Q +   + ++           
Sbjct: 3   ITQPTAINVIFPDPALANA----IKIAAGKSNVT-DTVTQADLDGITTLSAFGTGVTTIE 57

Query: 578 PLWS-TNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQIL 636
            +    N   L L+DN+ +      + +L  ++  L LS N L     S++  L+ ++ L
Sbjct: 58  GVQYLNNLIGLELKDNQITDL--APLKNL-TKITELELSGNPLK--NVSAIAGLQSIKTL 112

Query: 637 SIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIP 696
            + S +++                D++              L +L VL L  N ++   P
Sbjct: 113 DLTSTQIT----------------DVTP----------LAGLSNLQVLYLDLNQITNISP 146

Query: 697 CSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHI 756
             L   T L  + +G  Q+S   PL    NLS    L+   N +S DI   L +L NL  
Sbjct: 147 --LAGLTNLQYLSIGNAQVSDLTPL---ANLSKLTTLKADDNKIS-DISP-LASLPNLIE 199

Query: 757 IDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSW 816
           + L +N  S   P  + N S L                                 + L+ 
Sbjct: 200 VHLKNNQISDVSP--LANTSNLFI-------------------------------VTLTN 226

Query: 817 NNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSLPN 876
             +T Q      NL   +++           P ++S   + +  NL++N  +        
Sbjct: 227 QTITNQPVFYNNNLVVPNVVKGPSGAPI--APATISDNGTYASPNLTWNLTSFINNVSYT 284

Query: 877 FNDP 880
           FN  
Sbjct: 285 FNQS 288

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 66.6 bits (163), Expect = 6e-12
 Identities = 49/312 (15%), Positives = 104/312 (33%), Gaps = 65/312 (20%)

Query: 582 TNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSN 641
            NA ++    +  +  + +   + +  +  L      ++      V  L +L  L ++ N
Sbjct: 19  ANAIKIAAGKSNVTDTVTQ---ADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDN 73

Query: 642 KLS-----GEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIP 696
           +++                    +++S N L     S+   L+S+  L L++  ++    
Sbjct: 74  QITDLAPLKNLTKITE-------LELSGNPLK--NVSAIAGLQSIKTLDLTSTQITD--V 122

Query: 697 CSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHI 756
             L   + L  + L  NQ++   PL     L++   L + +  +S   P  L NL  L  
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISPL---AGLTNLQYLSIGNAQVSDLTP--LANLSKLTT 177

Query: 757 IDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSW 816
           +    N  S   P  + +L  L                                 + L  
Sbjct: 178 LKADDNKISDISP--LASLPNL-------------------------------IEVHLKN 204

Query: 817 NNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSLPN 876
           N ++   P  + N S L I+ L++  ++       ++L   + +       +G   +   
Sbjct: 205 NQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVV----KGPSGAPIAPAT 258

Query: 877 FNDPSIYEGNPL 888
            +D   Y    L
Sbjct: 259 ISDNGTYASPNL 270

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 66.6 bits (163), Expect = 7e-12
 Identities = 44/199 (22%), Positives = 85/199 (42%), Gaps = 28/199 (14%)

Query: 123 PSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQY 182
             + +L  L  L+L  N     ++      L  +  L LS +     +   +  L S++ 
Sbjct: 57  EGVQYLNNLIGLELKDNQIT--DLAP-LKNLTKITELELSGNPLK-NVSA-IAGLQSIKT 111

Query: 183 LDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVE 242
           LDL     +S          ++  L+GLS+L++L L   ++ +     +  +  L +L  
Sbjct: 112 LDL-----TST------QITDVTPLAGLSNLQVLYLDLNQITN-----ISPLAGLTNLQY 155

Query: 243 LRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGH 302
           L +   Q+  +    P  N + ++ L   +N  +  I P L SL +L +++L+ N  +  
Sbjct: 156 LSIGNAQVSDLT---PLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDV 210

Query: 303 IPNEFANLKLLEVLDLSNN 321
            P   AN   L ++ L+N 
Sbjct: 211 SP--LANTSNLFIVTLTNQ 227

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 55/312 (17%), Positives = 111/312 (35%), Gaps = 53/312 (16%)

Query: 384 LGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANL 443
              L N   +    ++   +   +  +L  +  L     G+  T  E    L+ L+   L
Sbjct: 15  DPALANAIKIAAGKSNV--TDTVTQADLDGITTLSAFGTGV--TTIEGVQYLNNLIGLEL 70

Query: 444 LQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPS 503
             N    +   +   NL ++    L            S N      LK++          
Sbjct: 71  KDNQITDL---APLKNLTKITELEL------------SGN-----PLKNVSA-------- 102

Query: 504 FPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNL 563
               +     + ++ L +  I+D  P    + LS+ +  L L  NQI   +       NL
Sbjct: 103 ----IAGLQSIKTLDLTSTQITDVTP---LAGLSN-LQVLYLDLNQIT-NISPLAGLTNL 153

Query: 564 RSIDLSSNHFEGTLPLWS-TNADELFLQDNRFSGPLPENIGSL--MPRLQRLYLSWNQLS 620
           + + + +       PL + +    L   DN+ S     +I  L  +P L  ++L  NQ+S
Sbjct: 154 QYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS-----DISPLASLPNLIEVHLKNNQIS 208

Query: 621 GRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRS 680
               S + N  +L I+++ +  ++ +     Y++ +     +   S     P++     +
Sbjct: 209 D--VSPLANTSNLFIVTLTNQTITNQPVF--YNNNLVVPNVVKGPSGAPIAPATISDNGT 264

Query: 681 LSVLLLSNNNLS 692
            +   L+ N  S
Sbjct: 265 YASPNLTWNLTS 276

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 80.2 bits (198), Expect = 2e-16
 Identities = 49/193 (25%), Positives = 69/193 (35%), Gaps = 19/193 (9%)

Query: 258 PFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLD 317
                 S   ++  + +  +A+PP L      T L+L  N               L  L+
Sbjct: 5   EVSKVASHLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 318 LSNNLDLGGQLPKL--FGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNS 375
           L        +L KL   G L  L +LDLS N L   +             L  LD+S N 
Sbjct: 62  LDRA-----ELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLP----ALTVLDVSFNR 111

Query: 376 LEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSI-GNLSSLRKLDLSYNGMNGTIPES-FG 433
           L      +L  L  LQ L L GN    ++P  +      L KL L+ N +   +P     
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLN 169

Query: 434 KLSELVDANLLQN 446
            L  L    L +N
Sbjct: 170 GLENLDTLLLQEN 182

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 76.3 bits (188), Expect = 3e-15
 Identities = 57/230 (24%), Positives = 84/230 (36%), Gaps = 35/230 (15%)

Query: 150 FGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSG 209
             ++ +   +N    + +  +PP          L L  +   + S +          L  
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPP--DLPKDTTILHLSENLLYTFSLAT---------LMP 53

Query: 210 LSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLD 269
            + L  LNL   +L       LQ    LP L  L L + QLQ +PL        +++VLD
Sbjct: 54  YTRLTQLNLDRAELTK-----LQVDGTLPVLGTLDLSHNQLQSLPLL--GQTLPALTVLD 106

Query: 270 LSENSFNSAIPPWLF-SLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQL 328
           +S N   S +P      L  L +LYL+ N      P        LE L L+NN      L
Sbjct: 107 VSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-----NL 160

Query: 329 PKL----FGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSN 374
            +L       L  L +L L  N+L      FF       + L +  L  N
Sbjct: 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFG-----SHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 48/206 (23%), Positives = 86/206 (41%), Gaps = 25/206 (12%)

Query: 581 STNADELFLQDNRFSGPLPENIGSLMPR-LQRLYLSWNQLSGRIPSSVCNLEDLQILSIR 639
             +  E+       +  LP ++    P+    L+LS N L     +++     L  L++ 
Sbjct: 9   VASHLEVNCDKRNLTA-LPPDL----PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 640 SNKLSGEFPNCWYHSQMFWG------IDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSG 693
             +L+          Q+         +D+S+N L  S+P    +L +L+VL +S N L+ 
Sbjct: 64  RAELT--------KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS 114

Query: 694 GIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLC-NLQ 752
               +L+    L  + L GN+L  +LP  +         L L +N L+ ++P  L   L+
Sbjct: 115 LPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLE 172

Query: 753 NLHIIDLSHNNFSGAIPRCIGNLSAL 778
           NL  + L  N+    IP+       L
Sbjct: 173 NLDTLLLQENSLY-TIPKGFFGSHLL 197

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.5 bits (147), Expect = 6e-10
 Identities = 52/236 (22%), Positives = 88/236 (37%), Gaps = 52/236 (22%)

Query: 663 SNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLW 722
              +LT ++P      +  ++L LS N L      +L   T LT ++L   +L+    L 
Sbjct: 18  DKRNLT-ALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK---LQ 71

Query: 723 ISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGN 782
           +   L     L L  N L   +P     L  L ++D+S N  + ++P             
Sbjct: 72  VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLP------------- 116

Query: 783 NSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEI-GNLSALHILNLSHN 841
                + L                 ++  + L  N L   +P  +      L  L+L++N
Sbjct: 117 -LGALRGL----------------GELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANN 158

Query: 842 QLSGAIPQSL-SSLASLSKLNLSFNNLAGKIPSLPN--FNDPSIYE----GNPLLC 890
            L+  +P  L + L +L  L L  N+L     ++P   F    +      GNP LC
Sbjct: 159 NLT-ELPAGLLNGLENLDTLLLQENSLY----TIPKGFFGSHLLPFAFLHGNPWLC 209

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 45/216 (20%), Positives = 66/216 (30%), Gaps = 41/216 (18%)

Query: 360 SGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDL 419
              P +   L LS N L      +L     L  L L        +    G L  L  LDL
Sbjct: 27  PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVD-GTLPVLGTLDL 84

Query: 420 SYNGMNGTIPESFGKLSEL----VDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKK 475
           S+N +  ++P     L  L    V  N L +     L       L  L+   L       
Sbjct: 85  SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-----LPLGALRGLGELQELYL------- 131

Query: 476 FVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSK 535
                  N      LK++           P  L    +L  + L N  ++  +P    + 
Sbjct: 132 -----KGN-----ELKTLP----------PGLLTPTPKLEKLSLANNNLT-ELPAGLLNG 170

Query: 536 LSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSN 571
           L + +  L+L  N +         S  L    L  N
Sbjct: 171 LEN-LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 42/256 (16%), Positives = 77/256 (30%), Gaps = 58/256 (22%)

Query: 386 NLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQ 445
            + +   +     +   ++P  +        L LS N +      +    + L   NL +
Sbjct: 8   KVASHLEVNCDKRNL-TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 446 NSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFP 505
                +        L  L +  L            S+N     +L+S+           P
Sbjct: 65  AELTKL---QVDGTLPVLGTLDL------------SHN-----QLQSL-----------P 93

Query: 506 VWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRS 565
           +  Q    LT + +    ++ ++P      L  E+  L L  N++K              
Sbjct: 94  LLGQTLPALTVLDVSFNRLT-SLPLGALRGLG-ELQELYLKGNELK-------------- 137

Query: 566 IDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPS 625
             L       T        ++L L +N  +  LP  + + +  L  L L  N L   IP 
Sbjct: 138 -TLPPGLLTPT-----PKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY-TIPK 189

Query: 626 SVCNLEDLQILSIRSN 641
                  L    +  N
Sbjct: 190 GFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.0 bits (130), Expect = 7e-08
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 38/171 (22%)

Query: 697 CSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHI 756
           C +        ++     L+ +LP  + ++ +    L L  NLL       L     L  
Sbjct: 4   CEVSKVASHLEVNCDKRNLT-ALPPDLPKDTTI---LHLSENLLYTFSLATLMPYTRLTQ 59

Query: 757 IDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSW 816
           ++L               L+ L      +V   L                  + ++DLS 
Sbjct: 60  LNLDRAE-----------LTKL------QVDGTL----------------PVLGTLDLSH 86

Query: 817 NNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNL 867
           N L   +P     L AL +L++S N+L+     +L  L  L +L L  N L
Sbjct: 87  NQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.0 bits (130), Expect = 7e-08
 Identities = 42/175 (24%), Positives = 57/175 (32%), Gaps = 40/175 (22%)

Query: 123 PSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQY 182
                L  L TLDLS N      +P     L  L  L++SF+        +L SL     
Sbjct: 71  QVDGTLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFN--------RLTSLPL--- 117

Query: 183 LDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVE 242
                                   L GL  L+ L L   +L  +       +   P L +
Sbjct: 118 ----------------------GALRGLGELQELYLKGNELKTLPPG---LLTPTPKLEK 152

Query: 243 LRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWN 297
           L L    L  +P  L      ++  L L ENS  + IP   F    L   +L  N
Sbjct: 153 LSLANNNLTELPAGL-LNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 79.5 bits (196), Expect = 7e-16
 Identities = 46/180 (25%), Positives = 67/180 (37%), Gaps = 18/180 (10%)

Query: 231 LQAV--NMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFS-LT 287
           L  V  ++      L L +  L  +         T++  L LS N   + I    F  + 
Sbjct: 30  LPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVP 88

Query: 288 SLTKLYLRWNFFTGHIPNE-FANLKLLEVLDLSNNLDLGGQL----PKLFGILRRLKSLD 342
           +L  L L  N     +    F++L+ LEVL L NN      +       F  + +L+ L 
Sbjct: 89  NLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNN-----HIVVVDRNAFEDMAQLQKLY 142

Query: 343 LSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNL--QYLRLSGNSF 400
           LS N ++    E     +  P  L  LDLSSN L+      L  L       L L  N  
Sbjct: 143 LSQNQISRFPVELIKDGNKLP-KLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 79.1 bits (195), Expect = 9e-16
 Identities = 53/200 (26%), Positives = 71/200 (35%), Gaps = 41/200 (20%)

Query: 250 LQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFS-LTSLTKLYLRWNFFTGHIPNE-F 307
           L  +P SLP    +  ++LDLS N+ +     W  + LT+L  L L  N     I +E F
Sbjct: 30  LPNVPQSLP----SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAF 84

Query: 308 ANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLE 367
             +  L  LDLS+N                L +LD             F         LE
Sbjct: 85  VPVPNLRYLDLSSN---------------HLHTLDEFL----------FSDLQ----ALE 115

Query: 368 YLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIP----SSIGNLSSLRKLDLSYNG 423
            L L +N +      +  ++  LQ L LS N      P         L  L  LDLS N 
Sbjct: 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSNK 174

Query: 424 MNGTIPESFGKLSELVDANL 443
           +         KL   V   L
Sbjct: 175 LKKLPLTDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 65.6 bits (160), Expect = 2e-11
 Identities = 46/189 (24%), Positives = 69/189 (36%), Gaps = 33/189 (17%)

Query: 581 STNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSV-CNLEDLQILSIR 639
            +    L L  N  S    E   + +  L  L LS N L+  I S     + +L+ L   
Sbjct: 38  PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYL--- 93

Query: 640 SNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPS-SFGSLRSLSVLLLSNNNLSGGIPCS 698
                                D+S+N L  ++    F  L++L VLLL NN++      +
Sbjct: 94  ---------------------DLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNA 131

Query: 699 LQNCTGLTSIDLGGNQLSGSLPLWI---SENLSSFFMLRLRSNLLSGDIPQRLCNLQNLH 755
            ++   L  + L  NQ+S   P+ +      L    +L L SN L       L  L    
Sbjct: 132 FEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV 190

Query: 756 IIDLS-HNN 763
              L  HNN
Sbjct: 191 KNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.2 bits (151), Expect = 3e-10
 Identities = 46/211 (21%), Positives = 71/211 (33%), Gaps = 41/211 (19%)

Query: 536 LSSEITYLILSNNQIKGKLPRQM---NSPNLRSIDLSSNHFEGTLPLWS----TNADELF 588
           L S    L LS+N +  +L  +       NL S+ LS NH    +   +     N   L 
Sbjct: 37  LPSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLD 94

Query: 589 LQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSV-CNLEDLQILSIRSNKLSGEF 647
           L  N     L E + S +  L+ L L  N +   +  +   ++  LQ L +  N++S   
Sbjct: 95  LSSNHLHT-LDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS--- 149

Query: 648 PNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLT- 706
               +  ++    +                L  L +L LS+N L       LQ       
Sbjct: 150 ---RFPVELIKDGN---------------KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191

Query: 707 -SIDLGGNQ------LSGSLPLWISENLSSF 730
             + L  N       L      W    LSS 
Sbjct: 192 NGLYLHNNPLECDCKLYQLFSHWQYRQLSSV 222

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.9 bits (140), Expect = 5e-09
 Identities = 48/210 (22%), Positives = 80/210 (38%), Gaps = 43/210 (20%)

Query: 663 SNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIP-CSLQNCTGLTSIDLGGNQLSGSLPL 721
           S   L  ++P S  S    ++L LS+NNLS      +    T L S+ L  N L+  +  
Sbjct: 26  SKQQLP-NVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISS 81

Query: 722 WISENLSSFFMLRLRSNLLSGDIPQR-LCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVY 780
                + +   L L SN L   + +    +LQ L ++ L +N+    + R          
Sbjct: 82  EAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDR---------- 129

Query: 781 GNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEI----GNLSALHIL 836
                 F+ +                A +  + LS N ++ + P E+      L  L +L
Sbjct: 130 ----NAFEDM----------------AQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLL 168

Query: 837 NLSHNQLSGAIPQSLSSLASLSKLNLSFNN 866
           +LS N+L       L  L +  K  L  +N
Sbjct: 169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 39/170 (22%), Positives = 63/170 (37%), Gaps = 39/170 (22%)

Query: 701 NCT-GLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQR-LCNLQNLHIID 758
           NC      +     QL  ++P  +    +    L L  N LS    +     L NLH + 
Sbjct: 15  NCLCASNILSCSKQQLP-NVPQSLPSYTAL---LDLSHNNLSRLRAEWTPTRLTNLHSLL 70

Query: 759 LSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNN 818
           LSHN+ +  I                E F  +                 ++  +DLS N+
Sbjct: 71  LSHNHLN-FISS--------------EAFVPVP----------------NLRYLDLSSNH 99

Query: 819 LTGQIPDEI-GNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNL 867
           L   + + +  +L AL +L L +N +      +   +A L KL LS N +
Sbjct: 100 LH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 36/164 (21%), Positives = 62/164 (37%), Gaps = 20/164 (12%)

Query: 131 LDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQ-LGSLSSLQYLDLY--- 186
              LDLS N+           +L NL  L LS +  +  I  +    + +L+YLDL    
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH 99

Query: 187 -----ADSFSSNSG--SLALHAQNLNWL-----SGLSSLKLLNLGFVKLDHVGADWLQAV 234
                   FS       L L+  ++  +       ++ L+ L L   ++     + ++  
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG 159

Query: 235 NMLPSLVELRLHYCQLQGIPLSLPFINFTSISV--LDLSENSFN 276
           N LP L+ L L   +L+ +PL+       +     L L  N   
Sbjct: 160 NKLPKLMLLDLSSNKLKKLPLTD-LQKLPAWVKNGLYLHNNPLE 202

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 75.4 bits (186), Expect = 1e-15
 Identities = 26/162 (16%), Positives = 52/162 (32%), Gaps = 12/162 (7%)

Query: 261 NFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSN 320
              S++ + L+  +        +    ++  L +     T    N  + L  LE L +  
Sbjct: 42  QMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMG 97

Query: 321 NLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGEL 380
             D+          L  L  LD+S +  +  +    +        +  +DLS N    ++
Sbjct: 98  K-DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP----KVNSIDLSYNGAITDI 152

Query: 381 PKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYN 422
              L  L  L+ L +  +         I +   L +L     
Sbjct: 153 -MPLKTLPELKSLNIQFDGV--HDYRGIEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 74.2 bits (183), Expect = 3e-15
 Identities = 26/162 (16%), Positives = 58/162 (35%), Gaps = 13/162 (8%)

Query: 237 LPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRW 296
           + SL  + L    +  +          +I  L ++     +  P  +  L++L +L +  
Sbjct: 43  MNSLTYITLANINVTDLT---GIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMG 97

Query: 297 NFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFF 356
              T       + L  L +LD+S++      +      L ++ S+DLS N    ++    
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAITDI---- 152

Query: 357 DGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGN 398
                 P  L+ L++  + +     + + +   L  L     
Sbjct: 153 MPLKTLPE-LKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 72.7 bits (179), Expect = 1e-14
 Identities = 35/196 (17%), Positives = 69/196 (35%), Gaps = 39/196 (19%)

Query: 674 SFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFML 733
           +   + SL+ + L+N N++      ++    +  + +     +   P+     LS+   L
Sbjct: 39  TEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNPI---SGLSNLERL 93

Query: 734 RLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWR 793
           R+    ++ D    L  L +L ++D+SH+    +I   I  L  +               
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV--------------- 138

Query: 794 VVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSS 853
                           NSIDLS+N     I   +  L  L  LN+  + +       +  
Sbjct: 139 ----------------NSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IED 179

Query: 854 LASLSKLNLSFNNLAG 869
              L++L      + G
Sbjct: 180 FPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 37/186 (19%), Positives = 65/186 (34%), Gaps = 20/186 (10%)

Query: 285 SLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGI--LRRLKSLD 342
           +  +     L  +          A +  L  + L+N       +  L GI     +K L 
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANI-----NVTDLTGIEYAHNIKDLT 72

Query: 343 LSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWG 402
           ++  +        ++  SG  N LE L +    +  +   +L  L +L  L +S ++   
Sbjct: 73  INNIHATN-----YNPISGLSN-LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 403 SIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKR 462
           SI + I  L  +  +DLSYNG    I      L EL   N+  +            +  +
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDY---RGIEDFPK 182

Query: 463 LESFRL 468
           L     
Sbjct: 183 LNQLYA 188

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 33/172 (19%), Positives = 64/172 (37%), Gaps = 16/172 (9%)

Query: 208 SGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISV 267
           + ++SL  + L  + +       L  +    ++ +L ++           P    +++  
Sbjct: 41  AQMNSLTYITLANINVTD-----LTGIEYAHNIKDLTINNIHATNYN---PISGLSNLER 92

Query: 268 LDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQ 327
           L +      S   P L  LTSLT L +  +     I  +   L  +  +DLS N  +   
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD- 151

Query: 328 LPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGE 379
                  L  LKSL++  + ++      + G    P  L  L   S ++ G+
Sbjct: 152 -IMPLKTLPELKSLNIQFDGVHD-----YRGIEDFP-KLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.4 bits (155), Expect = 2e-11
 Identities = 26/179 (14%), Positives = 59/179 (32%), Gaps = 30/179 (16%)

Query: 540 ITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWS-TNADELFLQDNRFSGPL 598
           +TY+ L+N  +   L     + N++ + +++ H     P+   +N + L +     +   
Sbjct: 46  LTYITLANINVT-DLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDK 104

Query: 599 PENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFW 658
             N+  L   L  L +S +     I + +  L  +  +                      
Sbjct: 105 IPNLSGL-TSLTLLDISHSAHDDSILTKINTLPKVNSI---------------------- 141

Query: 659 GIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSG 717
             D+S N     I     +L  L  L +  + +       +++   L  +      + G
Sbjct: 142 --DLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 25/167 (14%), Positives = 57/167 (34%), Gaps = 20/167 (11%)

Query: 606 MPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLS-----GEFPNCWYHSQMFWGI 660
           M  L  + L+   ++    + +    +++ L+I +   +         N          +
Sbjct: 43  MNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATNYNPISGLSNLER-------L 93

Query: 661 DISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSL- 719
            I    +T     +   L SL++L +S++     I   +     + SIDL  N     + 
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153

Query: 720 PLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSG 766
           PL   + L     L ++ + +       + +   L+ +        G
Sbjct: 154 PL---KTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 33/173 (19%), Positives = 65/173 (37%), Gaps = 24/173 (13%)

Query: 125 LLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLD 184
           +  L Y+   ++++ D  G           N++ L ++    +    P +  LS+L+ L 
Sbjct: 43  MNSLTYITLANINVTDLTG------IEYAHNIKDLTINNIHAT-NYNP-ISGLSNLERLR 94

Query: 185 LYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELR 244
           +     +S+          +  LSGL+SL LL++     D      L  +N LP +  + 
Sbjct: 95  IMGKDVTSD---------KIPNLSGLTSLTLLDISHSAHDDSI---LTKINTLPKVNSID 142

Query: 245 LHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWN 297
           L Y     I   +P      +  L++  +  +      +     L +LY    
Sbjct: 143 LSYNGA--ITDIMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 22/152 (14%), Positives = 57/152 (37%), Gaps = 35/152 (23%)

Query: 725 ENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNS 784
             ++S   + L +  ++ D+   +    N+  + +++ + +   P  I  LS L      
Sbjct: 41  AQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNL------ 90

Query: 785 EVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLS 844
                                      + +   ++T      +  L++L +L++SH+   
Sbjct: 91  -------------------------ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 845 GAIPQSLSSLASLSKLNLSFNNLAGKIPSLPN 876
            +I   +++L  ++ ++LS+N     I  L  
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDIMPLKT 157

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 22/151 (14%), Positives = 48/151 (31%), Gaps = 19/151 (12%)

Query: 127 HLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLY 186
           +   +  L ++               L NL  L +     + +  P L  L+SL  LD+ 
Sbjct: 64  YAHNIKDLTINNIHATNYN---PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI- 119

Query: 187 ADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLH 246
               S ++         L  ++ L  +  ++L +          +  +  LP L  L + 
Sbjct: 120 ----SHSA----HDDSILTKINTLPKVNSIDLSYNGAITD----IMPLKTLPELKSLNIQ 167

Query: 247 YCQLQGIPLSLPFINFTSISVLDLSENSFNS 277
           +  +          +F  ++ L     +   
Sbjct: 168 FDGVHDYR---GIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 20/141 (14%), Positives = 54/141 (38%), Gaps = 16/141 (11%)

Query: 512 TELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNS-PNLRSIDLSS 570
             +  + + N+  ++  P    S LS+ +  L +    +       ++   +L  +D+S 
Sbjct: 66  HNIKDLTINNIHATNYNP---ISGLSN-LERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121

Query: 571 NHFEGTL--PLWS-TNADELFLQDNRFSGPLPENIGSL--MPRLQRLYLSWNQLSGRIPS 625
           +  + ++   + +    + + L  N        +I  L  +P L+ L + ++ +      
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYN----GAITDIMPLKTLPELKSLNIQFDGVHD--YR 175

Query: 626 SVCNLEDLQILSIRSNKLSGE 646
            + +   L  L   S  + G+
Sbjct: 176 GIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 13/97 (13%)

Query: 123 PSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQY 182
           P+L  L  L  LD+S +  + + + +    L  +  ++LS++    +I P L +L  L+ 
Sbjct: 106 PNLSGLTSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNGAITDIMP-LKTLPELKS 163

Query: 183 LDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLG 219
           L++  D              +   +     L  L   
Sbjct: 164 LNIQFDGVH-----------DYRGIEDFPKLNQLYAF 189

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 77.4 bits (191), Expect = 1e-15
 Identities = 54/278 (19%), Positives = 97/278 (34%), Gaps = 40/278 (14%)

Query: 152 QLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLS 211
                   NL   S +  +      L+S+  +        S  G           +  L 
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG-----------IQYLP 68

Query: 212 SLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLS 271
           ++  L L   KL       ++ +  L +L  L L   +++ +       +   +  L L 
Sbjct: 69  NVTKLFLNGNKLTD-----IKPLANLKNLGWLFLDENKVKDLS---SLKDLKKLKSLSLE 120

Query: 272 ENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL 331
            N  +  I   L  L  L  LYL  N  T  I    + L  L+ L L +N     Q+  +
Sbjct: 121 HNGISD-ING-LVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDN-----QISDI 171

Query: 332 FGI--LRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKN 389
             +  L +L++L LS N+++          +G   NL+ L+L S     +      NL  
Sbjct: 172 VPLAGLTKLQNLYLSKNHISD-----LRALAGLK-NLDVLELFSQECLNKPINHQSNLVV 225

Query: 390 LQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGT 427
              ++ +  S     P  I +     K ++ ++    T
Sbjct: 226 PNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 72.4 bits (178), Expect = 6e-14
 Identities = 51/251 (20%), Positives = 86/251 (34%), Gaps = 38/251 (15%)

Query: 174 LGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQA 233
             + +     +L   S +                + L+S+  +      +       +Q 
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT-----------QNELNSIDQIIANNSDIKS-----VQG 63

Query: 234 VNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLY 293
           +  LP++ +L L+  +L  I    P  N  ++  L L EN         L  L  L  L 
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIK---PLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLS 118

Query: 294 LRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGI--LRRLKSLDLSANNLNGE 351
           L  N  +  I     +L  LE L L NN     ++  +  +  L +L +L L  N +   
Sbjct: 119 LEHNGIS-DING-LVHLPQLESLYLGNN-----KITDITVLSRLTKLDTLSLEDNQI--- 168

Query: 352 VHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNL 411
                   +G    L+ L LS N +     ++L  LKNL  L L          +   NL
Sbjct: 169 --SDIVPLAGLTK-LQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNL 223

Query: 412 SSLRKLDLSYN 422
                +  +  
Sbjct: 224 VVPNTVKNTDG 234

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.9 bits (156), Expect = 4e-11
 Identities = 58/333 (17%), Positives = 112/333 (33%), Gaps = 79/333 (23%)

Query: 541 TYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWS-TNADELFLQDNRFSGPLP 599
           +  I     IK ++            +L        +      + D++   ++       
Sbjct: 5   SETITVPTPIK-QIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK---- 59

Query: 600 ENIGSL--MPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMF 657
            ++  +  +P + +L+L+ N+L+  I   + NL++L  L +  NK+              
Sbjct: 60  -SVQGIQYLPNVTKLFLNGNKLT-DI-KPLANLKNLGWLFLDENKVK------------- 103

Query: 658 WGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSG 717
              D+S+             L+ L  L L +N +S      L +   L S+ LG N+++ 
Sbjct: 104 ---DLSS----------LKDLKKLKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKITD 148

Query: 718 SLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSA 777
              L     L+    L L  N +S DI   L  L  L  + LS N+        I +L A
Sbjct: 149 ITVL---SRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNH--------ISDLRA 195

Query: 778 LVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILN 837
           L    N                         ++ ++L       +  +   NL   + + 
Sbjct: 196 LAGLKN-------------------------LDVLELFSQECLNKPINHQSNLVVPNTVK 230

Query: 838 LSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGK 870
            +   L    P+ +S      K N+ ++     
Sbjct: 231 NTDGSLVT--PEIISDDGDYEKPNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 49/281 (17%), Positives = 92/281 (32%), Gaps = 52/281 (18%)

Query: 606 MPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNN 665
                +  L    ++     +   L  +  +   ++ +        Y   +   + ++ N
Sbjct: 23  FAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQGIQYLPNVTK-LFLNGN 78

Query: 666 SLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISE 725
            LT  I     +L++L  L L  N +      SL++   L S+ L  N +S    L    
Sbjct: 79  KLT-DI-KPLANLKNLGWLFLDENKVK--DLSSLKDLKKLKSLSLEHNGISDINGL---V 131

Query: 726 NLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSE 785
           +L     L L +N ++ DI   L  L  L  + L  N  S  +P  +  L+ L       
Sbjct: 132 HLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISDIVP--LAGLTKL------- 180

Query: 786 VFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSG 845
                                    ++ LS N+++      +  L  L +L L   +   
Sbjct: 181 ------------------------QNLYLSKNHISD--LRALAGLKNLDVLELFSQECLN 214

Query: 846 AIPQSLSSLASLSKLNLSFNNLAGKIPSLPNFNDPSIYEGN 886
                 S+L   + +     N  G + +    +D   YE  
Sbjct: 215 KPINHQSNLVVPNTV----KNTDGSLVTPEIISDDGDYEKP 251

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 48/255 (18%), Positives = 87/255 (34%), Gaps = 46/255 (18%)

Query: 512 TELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSN 571
             +  +I  N  I       +   +    T L L+ N++   +    N  NL  + L  N
Sbjct: 46  NSIDQIIANNSDIKSVQGIQYLPNV----TKLFLNGNKLT-DIKPLANLKNLGWLFLDEN 100

Query: 572 HFEGTLPLWS-TNADELFLQDNRFSGPLPENIGSL--MPRLQRLYLSWNQLSGRIPSSVC 628
             +    L        L L+ N  S     +I  L  +P+L+ LYL  N+++    + + 
Sbjct: 101 KVKDLSSLKDLKKLKSLSLEHNGIS-----DINGLVHLPQLESLYLGNNKIT--DITVLS 153

Query: 629 NLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSN 688
            L  L  LS+  N++S                DI               L  L  L LS 
Sbjct: 154 RLTKLDTLSLEDNQIS----------------DIVP----------LAGLTKLQNLYLSK 187

Query: 689 NNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRL 748
           N++S      L     L  ++L   +   + P+    NL     ++     L    P+ +
Sbjct: 188 NHISDLRA--LAGLKNLDVLELFSQECL-NKPINHQSNLVVPNTVKNTDGSLVT--PEII 242

Query: 749 CNLQNLHIIDLSHNN 763
            +  +    ++  + 
Sbjct: 243 SDDGDYEKPNVKWHL 257

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.0 bits (138), Expect = 9e-09
 Identities = 50/246 (20%), Positives = 91/246 (36%), Gaps = 27/246 (10%)

Query: 123 PSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQY 182
            +   L  +D +  + +D +   + +    L N+  L L+ +  + +I P L +L +L +
Sbjct: 40  VTQNELNSIDQIIANNSDIK--SV-QGIQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGW 94

Query: 183 LDLYADSFSSNSG--------SLALHA---QNLNWLSGLSSLKLLNLGFVKLDHVGADWL 231
           L L  +     S         SL+L      ++N L  L  L+ L LG  K+       +
Sbjct: 95  LFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD-----I 149

Query: 232 QAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTK 291
             ++ L  L  L L   Q+  I    P    T +  L LS+N  +  +   L  L +L  
Sbjct: 150 TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDV 204

Query: 292 LYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGE 351
           L L          N  +NL +   +  ++   +  ++    G   +   +         E
Sbjct: 205 LELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPN-VKWHLPEFTNE 263

Query: 352 VHEFFD 357
           V   F 
Sbjct: 264 VSFIFY 269

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 47/280 (16%), Positives = 87/280 (31%), Gaps = 69/280 (24%)

Query: 365 NLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGM 424
                +L   S+   +      L ++  +  + +    S+   I  L ++ KL L+ N +
Sbjct: 25  ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI-KSV-QGIQYLPNVTKLFLNGNKL 80

Query: 425 NGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNW 484
                +    L  L    L +N    +   S   +LK+L+S  L             +N 
Sbjct: 81  TDI--KPLANLKNLGWLFLDENK---VKDLSSLKDLKKLKSLSL------------EHN- 122

Query: 485 VPPFRLKSIQ-IENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYL 543
                +  I  + +               +L S+ L N  I+D       S+L+  +  L
Sbjct: 123 ----GISDINGLVHL-------------PQLESLYLGNNKITDITV---LSRLTK-LDTL 161

Query: 544 ILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIG 603
            L +NQI   +        L+++ LS NH      L                        
Sbjct: 162 SLEDNQIS-DIVPLAGLTKLQNLYLSKNHISDLRAL------------------------ 196

Query: 604 SLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKL 643
           + +  L  L L   +   +  +   NL     +      L
Sbjct: 197 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 32/200 (16%), Positives = 65/200 (32%), Gaps = 33/200 (16%)

Query: 684 LLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGD 743
            +     +                 +L    ++ ++       L+S   +   ++ +   
Sbjct: 7   TITVPTPIKQIFS--DDAFAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIK-S 60

Query: 744 IPQRLCNLQNLHIIDLSHNNFSGAIP-RCIGNLSALVYGNNS----EVFQQLIWRVVKGR 798
           + Q +  L N+  + L+ N  +   P   + NL  L    N        + L        
Sbjct: 61  V-QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLK------- 112

Query: 799 NPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLS 858
                     + S+ L  N ++  I   + +L  L  L L +N+++      LS L  L 
Sbjct: 113 ---------KLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKIT--DITVLSRLTKLD 159

Query: 859 KLNLSFNNLAGKIPSLPNFN 878
            L+L  N ++  I  L    
Sbjct: 160 TLSLEDNQIS-DIVPLAGLT 178

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 19/156 (12%)

Query: 250 LQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLF-SLTSLTKLYLRWNFFTGHIPNEFA 308
           L  IP +LP     +I+ + L +N+    IPP  F     L ++ L  N  +   P+ F 
Sbjct: 23  LTEIPTNLP----ETITEIRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ 77

Query: 309 NLKLLEVLDLSNNLDLGGQL----PKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPN 364
            L+ L  L L  N     ++      LF  L  L+ L L+AN +N    + F        
Sbjct: 78  GLRSLNSLVLYGN-----KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH---- 128

Query: 365 NLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSF 400
           NL  L L  N L+     +   L+ +Q + L+ N F
Sbjct: 129 NLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 15/150 (10%)

Query: 277 SAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQL----PKLF 332
           + IP  L    ++T++ L  N      P  F+  K L  +DLSNN     Q+    P  F
Sbjct: 24  TEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-----QISELAPDAF 76

Query: 333 GILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQY 392
             LR L SL L  N +       F+G      +L+ L L++N +      +  +L NL  
Sbjct: 77  QGLRSLNSLVLYGNKITELPKSLFEGLF----SLQLLLLNANKINCLRVDAFQDLHNLNL 132

Query: 393 LRLSGNSFWGSIPSSIGNLSSLRKLDLSYN 422
           L L  N        +   L +++ + L+ N
Sbjct: 133 LSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.9 bits (143), Expect = 8e-10
 Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 7/141 (4%)

Query: 333 GILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQY 392
            +   +  + L  N +       F  +      L  +DLS+N +    P +   L++L  
Sbjct: 29  NLPETITEIRLEQNTIKVIPPGAFSPYK----KLRRIDLSNNQISELAPDAFQGLRSLNS 84

Query: 393 LRLSGNSFWGSIPSSI-GNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGI 451
           L L GN     +P S+   L SL+ L L+ N +N    ++F  L  L   +L  N  + I
Sbjct: 85  LVLYGNKI-TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI 143

Query: 452 LQESQFMNLKRLESFRLTTEP 472
            + + F  L+ +++  L   P
Sbjct: 144 AKGT-FSPLRAIQTMHLAQNP 163

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 33/158 (20%), Positives = 61/158 (38%), Gaps = 22/158 (13%)

Query: 582 TNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCN-LEDLQILSIRS 640
               E+ L+ N     +P    S   +L+R+ LS NQ+S  +       L  L  L +  
Sbjct: 32  ETITEIRLEQNTIKV-IPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYG 89

Query: 641 NKLSGEFPNCWYHSQMFWG------IDISNNSLTGSIPS-SFGSLRSLSVLLLSNNNLSG 693
           NK++ E P       +F G      + ++ N +   +   +F  L +L++L L +N L  
Sbjct: 90  NKIT-ELP-----KSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQT 142

Query: 694 GIPCSLQNCTGLTSIDLGGNQLSGS-----LPLWISEN 726
               +      + ++ L  N          L  ++  N
Sbjct: 143 IAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTN 180

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.8 bits (135), Expect = 7e-09
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 6/116 (5%)

Query: 207 LSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSIS 266
            S    L+ ++L   ++  +  D   A   L SL  L L+  ++  +P SL F    S+ 
Sbjct: 52  FSPYKKLRRIDLSNNQISELAPD---AFQGLRSLNSLVLYGNKITELPKSL-FEGLFSLQ 107

Query: 267 VLDLSENSFNSAIPPWLF-SLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNN 321
           +L L+ N  N  +    F  L +L  L L  N         F+ L+ ++ + L+ N
Sbjct: 108 LLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 41/148 (27%), Positives = 60/148 (40%), Gaps = 20/148 (13%)

Query: 132 DTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQL-GSLSSLQYLDLYADSF 190
             + L  N  +    P  F   K LR ++LS +  S E+ P     L SL  L LY +  
Sbjct: 35  TEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI 92

Query: 191 SSNSGSLALHAQNLNW--LSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYC 248
           +            L      GL SL+LL L   K++ +  D   A   L +L  L L+  
Sbjct: 93  TE-----------LPKSLFEGLFSLQLLLLNANKINCLRVD---AFQDLHNLNLLSLYDN 138

Query: 249 QLQGIPLSLPFINFTSISVLDLSENSFN 276
           +LQ I     F    +I  + L++N F 
Sbjct: 139 KLQTIAKGT-FSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 37/163 (22%), Positives = 60/163 (36%), Gaps = 38/163 (23%)

Query: 733 LRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIW 792
           +RL  N +    P      + L  IDLS+N            +S L        FQ L  
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-----------ISELAPD----AFQGL-- 79

Query: 793 RVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEI-GNLSALHILNLSHNQLSGAIPQSL 851
                           +NS+ L  N +T ++P  +   L +L +L L+ N+++     + 
Sbjct: 80  --------------RSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAF 124

Query: 852 SSLASLSKLNLSFNNL----AGKIPSLPNFNDPSIYEGNPLLC 890
             L +L+ L+L  N L     G    L       +   NP +C
Sbjct: 125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA-QNPFIC 166

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 18/65 (27%), Positives = 29/65 (44%)

Query: 803 SNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNL 862
           +N+   +  I L  N +    P        L  ++LS+NQ+S   P +   L SL+ L L
Sbjct: 28  TNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87

Query: 863 SFNNL 867
             N +
Sbjct: 88  YGNKI 92

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 74.4 bits (183), Expect = 4e-14
 Identities = 55/329 (16%), Positives = 100/329 (30%), Gaps = 58/329 (17%)

Query: 131 LDTLDLSLNDF--EGAE-IPEYFGQLKNLRYLNLSFSSFSGE----IPPQLGSLSSLQYL 183
           ++   L L+    E  + +     +  +++ + LS ++   E    +   + S   L+  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 184 DLYADSFSSNSGSLALHAQN--LNWLSGLSSLKLLNLGFVKLDHVGADWL-QAVNMLPSL 240
           +  +D F+         A    L  L     L  + L          + L   ++    L
Sbjct: 66  EF-SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 241 VELRLHYCQ------------LQGIPLSLPFINFTSISVLDLSENSFN----SAIPPWLF 284
             L LH               LQ + ++    N   +  +    N               
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184

Query: 285 SLTSLTKLYLRWNFFTGH-----IPNEFANLKLLEVLDLSNNL--DLGGQ-LPKLFGILR 336
           S   L  + +  N          +    A  + L+VLDL +N    LG   L        
Sbjct: 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244

Query: 337 RLKSLDLSANNLNGE-VHEFFDGFSGRPN-NLEYLDLSSNSLEGELPKSLGN-LKNLQYL 393
            L+ L L+   L+        D FS   N  L+ L L  N +E +  ++L   +      
Sbjct: 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE---- 300

Query: 394 RLSGNSFWGSIPSSIGNLSSLRKLDLSYN 422
                            +  L  L+L+ N
Sbjct: 301 ----------------KMPDLLFLELNGN 313

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 51/330 (15%), Positives = 97/330 (29%), Gaps = 67/330 (20%)

Query: 89  HVTQLNLRNPYQLINGGVGDSTAYKGSCLGGKINPSLLHLKYLDTLDLSLNDFEGAEIPE 148
            +      +    I  G       +       +  +LL    L T+ LS N F G    E
Sbjct: 61  DLEIAEFSD----IFTGRVKDEIPEA---LRLLLQALLKCPKLHTVRLSDNAF-GPTAQE 112

Query: 149 YFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSL---AL-HAQNL 204
                                    L   + L++L L+ +     +G+    AL      
Sbjct: 113 PLIDF--------------------LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVN 152

Query: 205 NWLSGLSSLKLLNLGFVKLDHVGADWL-QAVNMLPSLVELRLHYCQLQ----GIPLSLPF 259
                   L+ +  G  +L++       +       L  +++    ++       L    
Sbjct: 153 KKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL 212

Query: 260 INFTSISVLDLSENSFN----SAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEV 315
                + VLDL +N+F     SA+   L S  +L +L L        +    A   +++ 
Sbjct: 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC----LLSARGA-AAVVDA 267

Query: 316 LDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGE-VHEFFDGFSGRPNNLEYLDLSSN 374
                N                L++L L  N +  + V         +  +L +L+L+ N
Sbjct: 268 FSKLEN--------------IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313

Query: 375 SL--EG----ELPKSLGNLKNLQYLRLSGN 398
               E     E+ +        +   L   
Sbjct: 314 RFSEEDDVVDEIREVFSTRGRGELDELDDM 343

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.9 bits (135), Expect = 3e-08
 Identities = 40/232 (17%), Positives = 65/232 (28%), Gaps = 50/232 (21%)

Query: 679 RSLSVLLLSNNNLSG----GIPCSLQNCTGLTSIDLGGNQLSGSLPLWISE--------- 725
            S+    L  + ++      +   L     +  I L GN +      W+SE         
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 726 --NLSSFFMLRLRSNLLSG--DIPQRLCNLQNLHIIDLSHNNFSGAIPRCIG-------N 774
               S  F  R++  +      + Q L     LH + LS N F       +         
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123

Query: 775 LSALVYGNN----------SEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQ-- 822
           L  L   NN          +   Q+L         P        + SI    N L     
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP-------PLRSIICGRNRLENGSM 176

Query: 823 --IPDEIGNLSALHILNLSHNQL-----SGAIPQSLSSLASLSKLNLSFNNL 867
                   +   LH + +  N +        + + L+    L  L+L  N  
Sbjct: 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.7 bits (132), Expect = 7e-08
 Identities = 53/393 (13%), Positives = 110/393 (27%), Gaps = 124/393 (31%)

Query: 366 LEYLDLSSNSLEGE----LPKSLGNLKNLQYLRLSGNSF----WGSIPSSIGNLSSLRKL 417
           +E   L  +++  E    +   L    +++ + LSGN+        +  +I +   L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 418 DLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFV 477
           + S         E    L  L+ A LL+                                
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQA-LLKCP------------------------------ 94

Query: 478 FNVSYNWVPPFRLKSIQIENCQVGP----SFPVWLQVQTELTSVILRNVGISD------- 526
                      +L ++++ +   GP        +L   T L  + L N G+         
Sbjct: 95  -----------KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 143

Query: 527 ----TIPGDWFSKLSSEITYLILSNNQIKGK--------LPRQMNSPNLRSIDLSSNHF- 573
                +  +  +K +  +  +I   N+++               +   L ++ +  N   
Sbjct: 144 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF---QSHRLLHTVKMVQNGIR 200

Query: 574 -EGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGR----IPSSVC 628
            EG   L                  L          L+ L L  N  +      +  ++ 
Sbjct: 201 PEGIEHL--------------LLEGLAYC-----QELKVLDLQDNTFTHLGSSALAIALK 241

Query: 629 NLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSN 688
           +  +L+ L +    LS                 + + + +            L  L L  
Sbjct: 242 SWPNLRELGLNDCLLSAR-----------GAAAVVD-AFSK------LENIGLQTLRLQY 283

Query: 689 NNLSGGIPCSL-----QNCTGLTSIDLGGNQLS 716
           N +      +L     +    L  ++L GN+ S
Sbjct: 284 NEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 54/360 (15%), Positives = 106/360 (29%), Gaps = 82/360 (22%)

Query: 540 ITYLILSNNQIKGKLPRQM-----NSPNLRSIDLSSNHF--EGTLPL-----WSTNADEL 587
           I    L  + I  +  + +        +++ I LS N    E    L        + +  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 588 FLQDN---RFSGPLPENIGSL------MPRLQRLYLSWNQLSGR----IPSSVCNLEDLQ 634
              D    R    +PE +  L       P+L  + LS N         +   +     L+
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 635 ILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGG 694
            L + +N L  +            G  I+      ++     +   L  ++   N L  G
Sbjct: 126 HLYLHNNGLGPQA-----------GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG 174

Query: 695 ----IPCSLQNCTGLTSIDLGGNQLS--GSLPLWISENLSSFFMLR---LRSNLLSGD-- 743
                  + Q+   L ++ +  N +   G   L + E L+    L+   L+ N  +    
Sbjct: 175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL-LLEGLAYCQELKVLDLQDNTFTHLGS 233

Query: 744 --IPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPE 801
             +   L +  NL  + L+    S      +    A     N      L           
Sbjct: 234 SALAIALKSWPNLRELGLNDCLLSARGAAAVV--DAFSKLENI----GLQ---------- 277

Query: 802 YSNIIADVNSIDLSWNNLTGQIPDEIG-----NLSALHILNLSHNQLS--GAIPQSLSSL 854
                    ++ L +N +       +       +  L  L L+ N+ S    +   +  +
Sbjct: 278 ---------TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 328

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 60/374 (16%), Positives = 102/374 (27%), Gaps = 103/374 (27%)

Query: 288 SLTKLYLRWNFFTG----HIPNEFANLKLLEVLDLSNNL--DLGGQ-LPKLFGILRRLKS 340
           S+    L+ +  T      +         ++ + LS N       + L +     + L+ 
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 341 LDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSF 400
            + S         E  +                      L ++L     L  +RLS N+F
Sbjct: 65  AEFSDIFTGRVKDEIPEALR------------------LLLQALLKCPKLHTVRLSDNAF 106

Query: 401 ----WGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQ 456
                  +   +   + L  L L  NG+    P++  K++  +    +    +       
Sbjct: 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLG---PQAGAKIARALQELAVNKKAK------- 156

Query: 457 FMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIEN------CQVGPSFPVWLQV 510
             N   L S                 N          ++EN       +         Q 
Sbjct: 157 --NAPPLRSIIC------------GRN----------RLENGSMKEWAKT-------FQS 185

Query: 511 QTELTSVILRNVGISDTIPGDWFS---KLSSEITYLILSNNQIKGK--------LPRQMN 559
              L +V +   GI                 E+  L L +N             L    +
Sbjct: 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK---S 242

Query: 560 SPNLRSIDLSSNHF--EGTLPL-------WSTNADELFLQDNRFSGP----LPENIGSLM 606
            PNLR + L+       G   +        +     L LQ N         L   I   M
Sbjct: 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302

Query: 607 PRLQRLYLSWNQLS 620
           P L  L L+ N+ S
Sbjct: 303 PDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.9 bits (117), Expect = 5e-06
 Identities = 46/299 (15%), Positives = 80/299 (26%), Gaps = 80/299 (26%)

Query: 606 MPRLQRLYLSWNQLS-------GRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFW 658
              ++ + LS N +            +S  +LE  +   I + ++  E P          
Sbjct: 31  DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA-------- 82

Query: 659 GIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLS--GGIPCS--LQNCTGLTSIDLGGNQ 714
                       +  +      L  + LS+N        P    L   T L  + L  N 
Sbjct: 83  ---------LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133

Query: 715 ------------LSGSLPLWISENLSSFFMLRLRSNLLSGD----IPQRLCNLQNLHIID 758
                       L        ++N      +    N L         +   + + LH + 
Sbjct: 134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK 193

Query: 759 LSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNN 818
           +  N      P  I +L         E+                         +DL  N 
Sbjct: 194 MVQNGIR---PEGIEHLLLEGLAYCQEL-----------------------KVLDLQDNT 227

Query: 819 LTGQ----IPDEIGNLSALHILNLSHNQLSG----AIPQSLSSLA--SLSKLNLSFNNL 867
            T      +   + +   L  L L+   LS     A+  + S L    L  L L +N +
Sbjct: 228 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.5 bits (108), Expect = 6e-05
 Identities = 38/294 (12%), Positives = 84/294 (28%), Gaps = 69/294 (23%)

Query: 508 LQVQTELTSVILRNVGISDTIPGDWFS--------KLSSEITYLILSNNQIKGKLPRQM- 558
           +  + +L      ++           +            ++  + LS+N         + 
Sbjct: 56  IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI 115

Query: 559 ----NSPNLRSIDLSSNHF--EGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRL 612
                   L  + L +N    +    +         LQ+   +           P L+ +
Sbjct: 116 DFLSKHTPLEHLYLHNNGLGPQAGAKIARA------LQELAVNKKAKNA-----PPLRSI 164

Query: 613 YLSWNQLSGR----IPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLT 668
               N+L          +  +   L  + +  N +  E            GI        
Sbjct: 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE------------GI-------E 205

Query: 669 GSIPSSFGSLRSLSVLLLSNNNLSG----GIPCSLQNCTGLTSIDLGGNQ--------LS 716
             +       + L VL L +N  +      +  +L++   L  + L            + 
Sbjct: 206 HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265

Query: 717 GSLPLWISENLSSFFMLRLRSNLLSGDIPQRLC-----NLQNLHIIDLSHNNFS 765
            +     +  L +   LRL+ N +  D  + L       + +L  ++L+ N FS
Sbjct: 266 DAFSKLENIGLQT---LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 49/249 (19%), Positives = 89/249 (35%), Gaps = 49/249 (19%)

Query: 155 NLRYLNLSFSSFSGEIPPQ-LGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSL 213
           + + L L  +     IP     +L ++  + +        S  + L     +    LS +
Sbjct: 32  STQTLKLIETHLR-TIPSHAFSNLPNISRIYV--------SIDVTLQQLESHSFYNLSKV 82

Query: 214 KLLNLGFVK-LDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSE 272
             + +   + L ++  D L+    LP L  L +    L+  P      +     +L++++
Sbjct: 83  THIEIRNTRNLTYIDPDALKE---LPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITD 139

Query: 273 NSFNSAIPPWLFS-LTSLTK-LYLRWNFFTGHIPNE-FANLKLLEVLDLSNNLDLGGQLP 329
           N + ++IP   F  L + T  L L  N FT  +    F   KL   + L+ N        
Sbjct: 140 NPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDA-VYLNKN-------- 189

Query: 330 KLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKN 389
                 + L  +D  A             F G  +    LD+S  S+   LP     L++
Sbjct: 190 ------KYLTVIDKDA-------------FGGVYSGPSLLDVSQTSVT-ALPSKG--LEH 227

Query: 390 LQYLRLSGN 398
           L+ L     
Sbjct: 228 LKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 45/281 (16%), Positives = 80/281 (28%), Gaps = 76/281 (27%)

Query: 363 PNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSI-GNLSSLRKLDLSY 421
           P + + L L    L      +  NL N+  + +S +     + S    NLS +  +++  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 422 NGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVS 481
                                 L       +       L  L+   +             
Sbjct: 90  T-------------------RNLTY-----IDPDALKELPLLKFLGI------------F 113

Query: 482 YNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEIT 541
                   LK          P               I  N  ++ +IP + F  L +E  
Sbjct: 114 NT-----GLKMF--------PDLTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETL 159

Query: 542 YLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPEN 601
            L L NN                   +    F G      T  D ++L  N++   + ++
Sbjct: 160 TLKLYNNGFT---------------SVQGYAFNG------TKLDAVYLNKNKYLTVIDKD 198

Query: 602 I-GSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSN 641
             G +      L +S   ++  +PS    LE L+ L  R+ 
Sbjct: 199 AFGGVYSGPSLLDVSQTSVT-ALPSKG--LEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 48/267 (17%), Positives = 82/267 (30%), Gaps = 66/267 (24%)

Query: 604 SLMPRLQRLYLSWNQLSGRIPSSV-CNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDI 662
           SL P  Q L L    L   IPS    NL ++  + +  +                     
Sbjct: 28  SLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSID--------------------- 65

Query: 663 SNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCS-LQNCTGLTSIDLGGNQLSGSLPL 721
              +L      SF +L  ++ + + N      I    L+    L  + +    L     L
Sbjct: 66  --VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDL 123

Query: 722 WISENLSSFFMLRLRSNLLSGDIP----QRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSA 777
               +   FF+L +  N     IP    Q LCN      + L +N F+ ++     N + 
Sbjct: 124 TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE--TLTLKLYNNGFT-SVQGYAFNGTK 180

Query: 778 LVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEI--GNLSALHI 835
           L                               +++ L+ N     I  +   G  S   +
Sbjct: 181 L-------------------------------DAVYLNKNKYLTVIDKDAFGGVYSGPSL 209

Query: 836 LNLSHNQLSGAIPQSLSSLASLSKLNL 862
           L++S   ++    + L  L  L   N 
Sbjct: 210 LDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 32/217 (14%), Positives = 63/217 (29%), Gaps = 38/217 (17%)

Query: 660 IDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSL 719
             ++   +   IPS      S   L L   +L      +  N   ++ I +  +     L
Sbjct: 16  FRVTCKDIQ-RIPSL---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL 71

Query: 720 PLWISENLSSFFMLRLRSNLLSGDIPQR-LCNLQNLHIIDLSHNNFSGAIPRCIGNLSAL 778
                 NLS    + +R+      I    L  L  L  + + +          +     L
Sbjct: 72  ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG--------LKMFPDL 123

Query: 779 VYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEI--GNLSALHIL 836
               ++++F  L                      +++ N     IP     G  +    L
Sbjct: 124 TKVYSTDIFFIL----------------------EITDNPYMTSIPVNAFQGLCNETLTL 161

Query: 837 NLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPS 873
            L +N  + ++     +   L  + L+ N     I  
Sbjct: 162 KLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDK 197

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 29/176 (16%), Positives = 45/176 (25%), Gaps = 41/176 (23%)

Query: 702 CTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQR-LCNLQNLHIIDLS 760
           C       +    +       I     S   L+L    L   IP     NL N+  I +S
Sbjct: 10  CHQEEDFRVTCKDIQR-----IPSLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVS 63

Query: 761 HNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLT 820
            +     +               S  F  L                + V  I++      
Sbjct: 64  IDVTLQQLE--------------SHSFYNL----------------SKVTHIEIRNTRNL 93

Query: 821 GQIPDEI-GNLSALHILNLSHNQLSGAIPQ--SLSSLASLSKLNLSFNNLAGKIPS 873
             I  +    L  L  L + +  L    P    + S      L ++ N     IP 
Sbjct: 94  TYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 69.3 bits (170), Expect = 3e-13
 Identities = 39/156 (25%), Positives = 60/156 (38%), Gaps = 18/156 (11%)

Query: 250 LQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFS-LTSLTKLYLRWNFFTGHIPNEFA 308
           L  IP  +P       + L L+ N F       +F  L  L K+    N  T      F 
Sbjct: 23  LNKIPEHIP----QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE 78

Query: 309 NLKLLEVLDLSNNLDLGGQL----PKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPN 364
               +  + L++N     +L     K+F  L  LK+L L +N +    ++ F G S    
Sbjct: 79  GASGVNEILLTSN-----RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS---- 129

Query: 365 NLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSF 400
           ++  L L  N +    P +   L +L  L L  N F
Sbjct: 130 SVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 28/142 (19%), Positives = 51/142 (35%), Gaps = 15/142 (10%)

Query: 238 PSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLF-SLTSLTKLYLRW 296
               ELRL+  +   +  +  F     +  ++ S N   + I    F   + + ++ L  
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGASGVNEILLTS 90

Query: 297 NFFTGHIPNEFANLKLLEVLDLSNNLDLGGQL----PKLFGILRRLKSLDLSANNLNGEV 352
           N         F  L+ L+ L L +N     ++       F  L  ++ L L  N +    
Sbjct: 91  NRLENVQHKMFKGLESLKTLMLRSN-----RITCVGNDSFIGLSSVRLLSLYDNQITTVA 145

Query: 353 HEFFDGFSGRPNNLEYLDLSSN 374
              FD       +L  L+L +N
Sbjct: 146 PGAFDTLH----SLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 60.1 bits (146), Expect = 4e-10
 Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 29/159 (18%)

Query: 582 TNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSV-CNLEDLQILSIRS 640
               EL L +N F+      I   +P+L+++  S N+++  I          +  + + S
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTS 90

Query: 641 NKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSS-FGSLRSLSVLLLSNNNLSGGIPCSL 699
           N+L                          ++    F  L SL  L+L +N ++     S 
Sbjct: 91  NRLE-------------------------NVQHKMFKGLESLKTLMLRSNRITCVGNDSF 125

Query: 700 QNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSN 738
              + +  + L  NQ++ ++     + L S   L L +N
Sbjct: 126 IGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 29/135 (21%), Positives = 48/135 (35%), Gaps = 6/135 (4%)

Query: 339 KSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGN 398
             L L+ N     V E    F   P  L  ++ S+N +      +      +  + L+ N
Sbjct: 35  AELRLNNNEFT--VLEATGIFKKLPQ-LRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 399 SFWGSIPSSI-GNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQF 457
               ++   +   L SL+ L L  N +     +SF  LS +   +L  N    +     F
Sbjct: 92  RL-ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV-APGAF 149

Query: 458 MNLKRLESFRLTTEP 472
             L  L +  L   P
Sbjct: 150 DTLHSLSTLNLLANP 164

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 29/146 (19%), Positives = 49/146 (33%), Gaps = 16/146 (10%)

Query: 178 SSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNML 237
                L L  + F+    +             L  L+ +N    K+  +      A    
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFK--------KLPQLRKINFSNNKITDIEEG---AFEGA 80

Query: 238 PSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFS-LTSLTKLYLRW 296
             + E+ L   +L+ +   + F    S+  L L  N   + +    F  L+S+  L L  
Sbjct: 81  SGVNEILLTSNRLENVQHKM-FKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYD 138

Query: 297 NFFTGHIPNE-FANLKLLEVLDLSNN 321
           N  T  +    F  L  L  L+L  N
Sbjct: 139 NQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 37/146 (25%), Positives = 59/146 (40%), Gaps = 15/146 (10%)

Query: 132 DTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQ-LGSLSSLQYLDLYADSF 190
             L L+ N+F   E    F +L  LR +N S +  + +I        S +  + L ++  
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRL 93

Query: 191 SSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQL 250
            +      +         GL SLK L L   ++  VG D   +   L S+  L L+  Q+
Sbjct: 94  EN------VQH---KMFKGLESLKTLMLRSNRITCVGND---SFIGLSSVRLLSLYDNQI 141

Query: 251 QGIPLSLPFINFTSISVLDLSENSFN 276
             +     F    S+S L+L  N FN
Sbjct: 142 TTVAPGA-FDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 33/180 (18%), Positives = 63/180 (35%), Gaps = 50/180 (27%)

Query: 512 TELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSN 571
                + L N   +       F KL  ++  +  SNN+I                D+   
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLP-QLRKINFSNNKIT---------------DIEEG 75

Query: 572 HFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSV-CNL 630
            FEG      +  +E+ L  NR    +   +   +  L+ L L  N+++  + +     L
Sbjct: 76  AFEGA-----SGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGL 128

Query: 631 EDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIP-SSFGSLRSLSVLLLSNN 689
             +++LS+  N+++                         ++   +F +L SLS L L  N
Sbjct: 129 SSVRLLSLYDNQIT-------------------------TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 13/75 (17%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 803 SNIIADVNSIDLSWNNLTGQIPDEI-GNLSALHILNLSHNQLSGAIPQSLSSLASLSKLN 861
            +I      + L+ N  T      I   L  L  +N S+N+++     +    + ++++ 
Sbjct: 28  EHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87

Query: 862 LSFNNLAGKIPSLPN 876
           L+ N L     ++ +
Sbjct: 88  LTSNRLE----NVQH 98

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 71.5 bits (175), Expect = 6e-13
 Identities = 67/470 (14%), Positives = 131/470 (27%), Gaps = 58/470 (12%)

Query: 127 HLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLG-SLSSLQYLDL 185
           H    + +      +    I         L  + L     + +    +  S  + + L L
Sbjct: 78  HFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL 137

Query: 186 YADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAV-NMLPSLVELR 244
            +    S  G  A+        +   +LK L+L    +D V   WL    +   SLV L 
Sbjct: 138 SSCEGFSTDGLAAI-------AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLN 190

Query: 245 LHYCQLQGIPLSLPFI--NFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRW------ 296
           +     +    +L  +     ++  L L+       +   L     L +L          
Sbjct: 191 ISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVR 250

Query: 297 NFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFF 356
                 +    +  K L  L    +      LP ++ +  RL +L+LS   +        
Sbjct: 251 PDVYSGLSVALSGCKELRCLSGFWDAVPAY-LPAVYSVCSRLTTLNLSYATVQSYDLV-- 307

Query: 357 DGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSG-NSFWGSIPSSIG------ 409
                +   L+ L +     +  L       K+L+ LR+     F      ++       
Sbjct: 308 -KLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366

Query: 410 ---NLSSLRKLDLSYNGM-NGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLES 465
                  L  +      M N  +         +    L                ++    
Sbjct: 367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRL--------------CIIEPKAP 412

Query: 466 FRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGIS 525
             LT EP       +  +      L+ + +        F        ++  + +   G S
Sbjct: 413 DYLTLEPLDIGFGAIVEHCK---DLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDS 469

Query: 526 DTIPGDWFSKLSS---EITYLILSNNQI--KGKLPRQMNSPNLRSIDLSS 570
           D         + S    +  L + +     K  L        +RS+ +SS
Sbjct: 470 D----LGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 59.5 bits (144), Expect = 3e-09
 Identities = 47/265 (17%), Positives = 87/265 (32%), Gaps = 24/265 (9%)

Query: 176 SLSSLQYLDLY-ADSFSSNSGSLALHAQNLNW--LSGLSSLKLLNLGFVKLDHVGADWLQ 232
            +       ++  + ++ +  ++      +    L G       NL           W++
Sbjct: 39  EIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIE 98

Query: 233 AV-NMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSF--NSAIPPWLFSLTSL 289
           A+ +    L E+RL    +    L L   +F +  VL LS         +     +  +L
Sbjct: 99  AMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNL 158

Query: 290 TKLYLRWNFFTG----HIPNEFANLKLLEVLDLSN---NLDLGGQLPKLFGILRRLKSLD 342
            +L LR +         + +       L  L++S     +     L +L      LKSL 
Sbjct: 159 KELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSA-LERLVTRCPNLKSLK 217

Query: 343 LSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGE------LPKSLGNLKNLQYLRLS 396
           L+      ++             LE L     + E        L  +L   K L+ L   
Sbjct: 218 LNRAVPLEKLATLLQRAP----QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGF 273

Query: 397 GNSFWGSIPSSIGNLSSLRKLDLSY 421
            ++    +P+     S L  L+LSY
Sbjct: 274 WDAVPAYLPAVYSVCSRLTTLNLSY 298

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 52.6 bits (126), Expect = 5e-07
 Identities = 66/525 (12%), Positives = 148/525 (28%), Gaps = 98/525 (18%)

Query: 256 SLPFINFTSISVLDLSENSFNSAIPPWLFSLTS----LTKLYLRWNFFTGHIPNEFA-NL 310
           S+        +  +L  + +   + PW+ +++S    L ++ L+    T       A + 
Sbjct: 70  SVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSF 129

Query: 311 KLLEVLDLSNNLDLGGQ-LPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYL 369
           K  +VL LS+        L  +    R LK LDL  ++++     +   F     +L  L
Sbjct: 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSL 189

Query: 370 DLS--SNSLEGELPKSLG-NLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNG 426
           ++S  ++ +     + L     NL+ L+L+       + + +     L +L         
Sbjct: 190 NISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG----- 244

Query: 427 TIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVP 486
                    +  V  ++                 K L       +    ++  V      
Sbjct: 245 --------YTAEVRPDVY------SGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC-- 288

Query: 487 PFRLKSIQIENCQVGPSFPVWLQVQTELTSVI-----LRNVGISDTIPGDWFSKLSSEIT 541
             RL ++ +    V            +L  ++     L+ + + D I       L+S   
Sbjct: 289 -SRLTTLNLSYATVQSY---------DLVKLLCQCPKLQRLWVLDYIEDAGLEVLAS--- 335

Query: 542 YLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPEN 601
                               +LR + +  +      P  +     L             +
Sbjct: 336 -----------------TCKDLRELRVFPSEPFVMEPNVALTEQGL------------VS 366

Query: 602 IGSLMPRLQRLYLSWNQLSGR----IPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMF 657
           +    P+L+ +     Q++      I  +  N+   ++  I                   
Sbjct: 367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY------------ 414

Query: 658 WGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSG 717
               ++   L     +     + L  L LS                 +  + +     S 
Sbjct: 415 ----LTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSD 470

Query: 718 SLPLWISENLSSFFMLRLRS-NLLSGDIPQRLCNLQNLHIIDLSH 761
                +     S   L +R        +      L+ +  + +S 
Sbjct: 471 LGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 41/187 (21%), Positives = 70/187 (37%), Gaps = 23/187 (12%)

Query: 237 LPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRW 296
           L + V+  L    +  +         + +   +   ++  S     +   T+L +L+L  
Sbjct: 18  LANAVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSH 72

Query: 297 NFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGI-LRRLKSLDLSANNLNGEVHEF 355
           N  +  +     +L  LE L ++ N     +L  L GI    L  L L  N L       
Sbjct: 73  NQIS-DLSP-LKDLTKLEELSVNRN-----RLKNLNGIPSACLSRLFLDNNEL-----RD 120

Query: 356 FDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLR 415
            D      N LE L + +N L+  +   LG L  L+ L L GN    +    +  L  + 
Sbjct: 121 TDSLIHLKN-LEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEI--TNTGGLTRLKKVN 175

Query: 416 KLDLSYN 422
            +DL+  
Sbjct: 176 WIDLTGQ 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 41/222 (18%), Positives = 74/222 (33%), Gaps = 41/222 (18%)

Query: 543 LILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWS-TNADELFLQDNRFSGPLPEN 601
            I     I  ++       N    +L        +     +        ++         
Sbjct: 2   SIQRPTPIN-QVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS--LAG 58

Query: 602 IGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGID 661
           +      L+ L+LS NQ+S  + S + +L  L+ LS+  N+L                 +
Sbjct: 59  MQFF-TNLKELHLSHNQIS-DL-SPLKDLTKLEELSVNRNRLK----------------N 99

Query: 662 ISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPL 721
           ++                 LS L L NN L      SL +   L  + +  N+L   + L
Sbjct: 100 LNGIPSA-----------CLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLKSIVML 146

Query: 722 WISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNN 763
                LS   +L L  N ++ +    L  L+ ++ IDL+   
Sbjct: 147 ---GFLSKLEVLDLHGNEIT-NTGG-LTRLKKVNWIDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 37/197 (18%), Positives = 67/197 (34%), Gaps = 29/197 (14%)

Query: 125 LLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLD 184
              L      +L               +L  ++  N   S+    +   +   ++L+ L 
Sbjct: 15  DPGLANAVKQNLGKQSVTD---LVSQKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELH 69

Query: 185 LYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELR 244
           L     S N  S      +L+ L  L+ L+ L++   +L ++             L  L 
Sbjct: 70  L-----SHNQIS------DLSPLKDLTKLEELSVNRNRLKNL------NGIPSACLSRLF 112

Query: 245 LHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIP 304
           L   +L+        I+  ++ +L +  N   S I   L  L+ L  L L  N  T    
Sbjct: 113 LDNNELRDTD---SLIHLKNLEILSIRNNKLKS-IVM-LGFLSKLEVLDLHGNEITNTGG 167

Query: 305 NEFANLKLLEVLDLSNN 321
                LK +  +DL+  
Sbjct: 168 --LTRLKKVNWIDLTGQ 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 46/216 (21%), Positives = 72/216 (33%), Gaps = 61/216 (28%)

Query: 512 TELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSN 571
           + + +    N  I       +F+ L      L LS+NQI   L    +   L  + ++ N
Sbjct: 41  SGVQNFNGDNSNIQSLAGMQFFTNL----KELHLSHNQIS-DLSPLKDLTKLEELSVNRN 95

Query: 572 HFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLE 631
             +    + S                           L RL+L  N+L      S+ +L+
Sbjct: 96  RLKNLNGIPSAC-------------------------LSRLFLDNNELRD--TDSLIHLK 128

Query: 632 DLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNL 691
           +L+ILSIR+NKL                  I             G L  L VL L  N +
Sbjct: 129 NLEILSIRNNKLK----------------SIVM----------LGFLSKLEVLDLHGNEI 162

Query: 692 SGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENL 727
           +      L     +  IDL G +   + P+     L
Sbjct: 163 TN--TGGLTRLKKVNWIDLTGQKCV-NEPVKYQPEL 195

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 35/262 (13%), Positives = 80/262 (30%), Gaps = 71/262 (27%)

Query: 606 MPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNN 665
           +    +  L    ++     S   L  +Q  +  ++ +                  ++  
Sbjct: 18  LANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ----------------SLAG- 58

Query: 666 SLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISE 725
                         +L  L LS+N +S   P  L++ T L  + +  N+L     +    
Sbjct: 59  ---------MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGI---- 103

Query: 726 NLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSE 785
             +    L L +N L  D    L +L+NL I+ + +N         + ++  L + +   
Sbjct: 104 PSACLSRLFLDNNELR-DTDS-LIHLKNLEILSIRNNK--------LKSIVMLGFLSK-- 151

Query: 786 VFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSG 845
                                  +  +DL  N +T      +  L  ++ ++L+  +   
Sbjct: 152 -----------------------LEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQKCVN 186

Query: 846 AIPQSLSSLASLSKLNLSFNNL 867
              +    L   + +       
Sbjct: 187 EPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 24/160 (15%)

Query: 308 ANLKLLEVLDLSNNLDLGGQLPKLFGI--LRRLKSLDLSANNLNGEVHEFFDGFSGRPNN 365
             L      +L         +  L     L  +++ +   +N+     +   G      N
Sbjct: 16  PGLANAVKQNLGKQ-----SVTDLVSQKELSGVQNFNGDNSNI-----QSLAGMQF-FTN 64

Query: 366 LEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLS--SLRKLDLSYNG 423
           L+ L LS N +  +L   L +L  L+ L ++ N        ++  +    L +L L  N 
Sbjct: 65  LKELHLSHNQIS-DL-SPLKDLTKLEELSVNRNRL-----KNLNGIPSACLSRLFLDNNE 117

Query: 424 MNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRL 463
           +     +S   L  L   ++  N  + I+       L+ L
Sbjct: 118 L--RDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVL 155

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 33/191 (17%), Positives = 67/191 (35%), Gaps = 45/191 (23%)

Query: 677 SLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLR 736
            L +     L   +++     S +  +G+ + +   + +     +    NL     L L 
Sbjct: 17  GLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKE---LHLS 71

Query: 737 SNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVK 796
            N +S D+   L +L  L  + ++ N         + NL+ +                  
Sbjct: 72  HNQIS-DLSP-LKDLTKLEELSVNRNR--------LKNLNGIPSAC-------------- 107

Query: 797 GRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLAS 856
                       ++ + L  N L     D + +L  L IL++ +N+L   +   L  L+ 
Sbjct: 108 ------------LSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLKSIVM--LGFLSK 151

Query: 857 LSKLNLSFNNL 867
           L  L+L  N +
Sbjct: 152 LEVLDLHGNEI 162

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 28/198 (14%), Positives = 57/198 (28%), Gaps = 27/198 (13%)

Query: 125 LLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLD 184
           +     L  L LS N     ++      L  L  L+++ +     +       + L  L 
Sbjct: 59  MQFFTNLKELHLSHNQIS--DL-SPLKDLTKLEELSVNRNRLK-NLNG--IPSACLSRLF 112

Query: 185 LYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELR 244
           L  +                  L  L +L++L++   KL       +  +  L  L  L 
Sbjct: 113 LDNNELRDTDS-----------LIHLKNLEILSIRNNKLKS-----IVMLGFLSKLEVLD 156

Query: 245 LHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIP 304
           LH  ++              ++ +DL+     +    +   L     +      +    P
Sbjct: 157 LHGNEITNTG---GLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS--P 211

Query: 305 NEFANLKLLEVLDLSNNL 322
              +N        +   L
Sbjct: 212 YYISNGGSYVDGCVLWEL 229

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 71.0 bits (173), Expect = 1e-12
 Identities = 98/635 (15%), Positives = 187/635 (29%), Gaps = 180/635 (28%)

Query: 297 NFFTGHIPNEFAN-LKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEF 355
           NF    + +   + L   E+  +  + D      +LF  L            +   V +F
Sbjct: 32  NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS------KQEEM---VQKF 82

Query: 356 FDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWG----------SIP 405
            +    R N   Y     + ++ E  +     +     R   +  +           S  
Sbjct: 83  VEE-VLRIN---Y-KFLMSPIKTEQRQPSMMTRMYIEQR---DRLYNDNQVFAKYNVSRL 134

Query: 406 SSIGNL-SSLRKLD----LSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQF--- 457
                L  +L +L     +  +G+ G      GK + +   ++  +    +  +  F   
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLG-----SGK-TWVA-LDVCLS--YKVQCKMDFKIF 185

Query: 458 -MNLKRLESFRLTTEPTKKFVFNVSYNWV--------PPFRLKSIQ--IENCQVGPSFPV 506
            +NLK   S     E  +K ++ +  NW            R+ SIQ  +        +  
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 507 WLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNN-QIKGKLPRQMNSPNLRS 565
            L        ++L NV  +     + F+ LS +I  L+ +   Q+   L          +
Sbjct: 246 CL--------LVLLNVQNAKAW--NAFN-LSCKI--LLTTRFKQVTDFLS------AATT 286

Query: 566 IDLSSNHFEGTLPLWSTNADELFLQ--DNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRI 623
             +S +H   TL         L L+  D R    LP  + +  PR               
Sbjct: 287 THISLDHHSMTLT--PDEVKSLLLKYLDCRPQD-LPREVLTTNPRR-------------- 329

Query: 624 PSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSL----- 678
                       LSI +  +  +    W      W   ++ + LT  I SS   L     
Sbjct: 330 ------------LSIIAESIR-DGLATW----DNW-KHVNCDKLTTIIESSLNVLEPAEY 371

Query: 679 ----RSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLW--ISENLSSFFM 732
                 LSV   S +     IP      T L S+            +W  + ++     +
Sbjct: 372 RKMFDRLSVFPPSAH-----IP------TILLSL------------IWFDVIKSDVMVVV 408

Query: 733 LRL-RSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLI 791
            +L + +L+     +   ++ ++++                         N   + + ++
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLE------------------NEYALHRSIV 450

Query: 792 WRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSL 851
                    ++ NI    +S DL    L       IG+    H+ N+ H +         
Sbjct: 451 ---------DHYNIPKTFDSDDLIPPYLDQYFYSHIGH----HLKNIEHPERMTLFRMVF 497

Query: 852 SSLASL-SKLNLSFNNLAGKIPSLPNFNDPSIYEG 885
                L  K+             L        Y+ 
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 1e-09
 Identities = 88/617 (14%), Positives = 174/617 (28%), Gaps = 213/617 (34%)

Query: 7   FSSDHFKSIC--------TFLILFSLSSYLGSTIKHCLADANVEVLCLDAEREGLL-AFK 57
            S +    I         T  + ++L S     ++  + +       L    + L+   K
Sbjct: 46  LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV------LRINYKFLMSPIK 99

Query: 58  ESLTDPSGRLSSWVGQDCCKWNGVYCNNQS---GHVTQ-----------LNLR-NPYQLI 102
                PS     ++ Q    +N    +NQ     +V++           L LR     LI
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYN----DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155

Query: 103 NGGVGDSTAYKGSCLGGKINPSLLHLKYLDTLDL-SLNDFEGAEIPEYFGQLKNLRYLNL 161
           +G +G           GK   + + L    +  +    DF              + +LNL
Sbjct: 156 DGVLG--------S--GK---TWVALDVCLSYKVQCKMDF-------------KIFWLNL 189

Query: 162 SFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNL-NWLSGLSSLKLLNLGF 220
              +    +   L  L     +D    S S +S ++ L   ++   L  L   K      
Sbjct: 190 KNCNSPETVLEMLQKLLYQ--IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 221 VKLDHVGADW----LQAVN----ML-------------------PSLVELRLHYCQLQGI 253
           + L +V          A N    +L                    SL    +     +  
Sbjct: 248 LVLLNV---QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV- 303

Query: 254 PLSLPFINFTSISVLDLSENSFNSAIPPWLFSL--TSLTKLYLRWNFFTGHIPNEFANLK 311
             SL  + +      DL          P   S+   S+      W+ +  H+  +    K
Sbjct: 304 -KSL-LLKYLDCRPQDLPREV--LTTNPRRLSIIAESIRDGLATWDNWK-HVNCD----K 354

Query: 312 LLEVLDLS-NNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLD 370
           L  +++ S N L+     P  +   R++                             +  
Sbjct: 355 LTTIIESSLNVLE-----PAEY---RKM-----------------------------FDR 377

Query: 371 LSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPE 430
           LS        P S                    IP+ +  LS +      +  +  +   
Sbjct: 378 LSV------FPPSA------------------HIPTIL--LSLI------WFDVIKSDVM 405

Query: 431 SFGKLSELVDANLLQNSWE-------GILQES--QFMNLKRL-----ESFRLT-----TE 471
               +++L   +L++   +        I  E   +  N   L     + + +       +
Sbjct: 406 VV--VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463

Query: 472 PTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPV------WLQVQTELTSVILRNVGIS 525
               ++    Y+ +    LK   IE+ +    F +      +L+ +       +R+   +
Sbjct: 464 LIPPYLDQYFYSHI-GHHLK--NIEHPERMTLFRMVFLDFRFLEQK-------IRHDSTA 513

Query: 526 DTIPGDWFSKLSSEITY 542
               G   + L     Y
Sbjct: 514 WNASGSILNTLQQLKFY 530

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 3e-09
 Identities = 66/483 (13%), Positives = 149/483 (30%), Gaps = 127/483 (26%)

Query: 441 ANLLQNSWEGILQES-QFMNLKRLESFRLTTEPTKKFVF--NVSYNWVPPF------RLK 491
             ++Q   E +L+ + +F+        R  +  T+ ++   +  YN    F      RL+
Sbjct: 76  EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135

Query: 492 SI-QIENC--QVGPSFPVWLQVQ-------TELTSVILRNVGISDTIPGDWFSKLSSEIT 541
              ++     ++ P+    + +        T +   +  +  +   +          +I 
Sbjct: 136 PYLKLRQALLELRPA--KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF--------KIF 185

Query: 542 YLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPEN 601
           +L L N      +   +    L                     D  +   +  S  +   
Sbjct: 186 WLNLKNCNSPETVLEMLQ--KL-----------------LYQIDPNWTSRSDHSSNIKLR 226

Query: 602 IGSLMPRLQRLYLSWNQLSGRIPSS------VCNLEDLQILSIRSNKLSGEFPNCWYHSQ 655
           I S+   L+RL  S         +       V N +     ++    L            
Sbjct: 227 IHSIQAELRRLLKSK-----PYENCLLVLLNVQNAKAWNAFNLSCKIL------------ 269

Query: 656 MFWGI---DISN-NSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLG 711
               +        + L+ +  +   SL   S+ L  +   S      L         DL 
Sbjct: 270 ----LTTRFKQVTDFLSAATTTHI-SLDHHSMTLTPDEVKS-----LLLKYLDCRPQDLP 319

Query: 712 GNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRC 771
              L+ + P  +     S     +R      D      N ++++   L+       I   
Sbjct: 320 REVLTTN-PRRL-----SIIAESIR------DGLATWDNWKHVNCDKLTT-----IIESS 362

Query: 772 IGNLSALVYGNNSEVFQQL-IWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNL 830
           +  L    Y    ++F +L ++       P  ++I   +  + L W ++       +  +
Sbjct: 363 LNVLEPAEY---RKMFDRLSVF-------PPSAHIPTIL--LSLIWFDVIKSDVMVV--V 408

Query: 831 SALHILNLSHNQLSGAIPQSLSSLASLS-KLNLSFNNLAG---KIPSLPNFNDPSIYEGN 886
           + LH  +L    +     +S  S+ S+  +L +   N       I  + ++N P  ++ +
Sbjct: 409 NKLHKYSL----VEKQPKESTISIPSIYLELKVKLENEYALHRSI--VDHYNIPKTFDSD 462

Query: 887 PLL 889
            L+
Sbjct: 463 DLI 465

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 1e-06
 Identities = 61/405 (15%), Positives = 101/405 (24%), Gaps = 143/405 (35%)

Query: 10  DHFKSICTFLILFSLSSYLGSTIKHCLADA----NVEVLCLDAEREGLLAFKESLTDPSG 65
           + F   C  L+          T    + D         + LD     L    E       
Sbjct: 260 NAFNLSCKILLT---------TRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVK----S 305

Query: 66  RLSSWVGQDC-------CKWNGVYCNNQSGHVTQLNLRNPYQLINGGVGDSTAYKGSCLG 118
            L  ++                                NP +L             S + 
Sbjct: 306 LLLKYLDCRPQDLPREVLT------------------TNPRRL-------------SIIA 334

Query: 119 GKINPSLLHLKYLD---------TLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSF--S 167
             I   L                 ++ SLN  E AE  + F             S F  S
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF----------DRLSVFPPS 384

Query: 168 GEIPPQL----------------------GSL-------SSLQYLDLYADSFSSNSGSLA 198
             IP  L                       SL       S++    +Y +         A
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444

Query: 199 LHAQNLNWLSGLSSLKLLNLGFVKLD-----HVGADWLQAVNMLPSLVELRLHYCQLQGI 253
           LH   ++  +   +    +L    LD     H+G   L+ +     +   R+ +      
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG-HHLKNIEHPERMTLFRMVF------ 497

Query: 254 PLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHI-PNEFANLKL 312
            L   F+           E         W  S  S+     +  F+  +I  N+    +L
Sbjct: 498 -LDFRFL-----------EQKIRHDSTAWNAS-GSILNTLQQLKFYKPYICDNDPKYERL 544

Query: 313 LEVLDLSNNLDLGGQLPKLFGILRRLKSLDL---SANNLNGEVHE 354
           +    + +       LPK+   L   K  DL   +    +  + E
Sbjct: 545 VN--AILDF------LPKIEENLICSKYTDLLRIALMAEDEAIFE 581

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 70.2 bits (171), Expect = 2e-12
 Identities = 43/223 (19%), Positives = 70/223 (31%), Gaps = 16/223 (7%)

Query: 135 DLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYAD------ 188
           +  L               + L    LS    S  +  +L S   LQ L+          
Sbjct: 330 ECVLLKDRPECWCRDSATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTI 388

Query: 189 -SFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDH--VGADWLQAVNMLPSLVELRL 245
                    L    + L + S L ++  +   ++         +          +  L L
Sbjct: 389 ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHL 448

Query: 246 HYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPN 305
            +  L  +           ++ LDLS N   + +PP L +L  L  L    N    ++  
Sbjct: 449 AHKDLTVLC---HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVDG 503

Query: 306 EFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNL 348
             ANL  L+ L L NN        +      RL  L+L  N+L
Sbjct: 504 -VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 69.0 bits (168), Expect = 4e-12
 Identities = 59/317 (18%), Positives = 102/317 (32%), Gaps = 30/317 (9%)

Query: 83  CNNQSGHVTQLNLRNPYQLINGGVGDSTAYKGSCLGGKINPSLLHLKYLDTLDLSLNDFE 142
           C +               L+        + +     G+  PS + L  L    L+    +
Sbjct: 256 CLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQ 315

Query: 143 GAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQ 202
                 + G   + +   L              +   L   +L  +  S+   S     +
Sbjct: 316 HTFRVIWTGSD-SQKECVLLKDRPECW-CRDSATDEQLFRCELSVEK-STVLQSELESCK 372

Query: 203 NLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINF 262
            L  L   +   LL +  +         ++A++ L    E   ++  L+ +       + 
Sbjct: 373 ELQELEPENKWCLLTIILL---------MRALDPLLYEKETLQYFSTLKAV-------DP 416

Query: 263 TSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNL 322
              + LD   + F             +  L+L     T  + +    L L+  LDLS+N 
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNR 474

Query: 323 DLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEG-ELP 381
                LP     LR L+ L  S N L     E  DG +  P  L+ L L +N L+     
Sbjct: 475 L--RALPPALAALRCLEVLQASDNAL-----ENVDGVANLPR-LQELLLCNNRLQQSAAI 526

Query: 382 KSLGNLKNLQYLRLSGN 398
           + L +   L  L L GN
Sbjct: 527 QPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.8 bits (139), Expect = 1e-08
 Identities = 43/248 (17%), Positives = 74/248 (29%), Gaps = 32/248 (12%)

Query: 222 KLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFN--SAI 279
               +     Q    +          C L          +  +   L   E S    + +
Sbjct: 305 PAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVL 364

Query: 280 PPWLFSLTSLTKLYLRWNFFT-------------GHIPNEFANLKLLEVLDLSNNLDLGG 326
              L S   L +L     +                +          L+ +D      L  
Sbjct: 365 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424

Query: 327 -------QLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGE 379
                  +   L      ++ L L+  +L   V    +        + +LDLS N L   
Sbjct: 425 LRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLL----LVTHLDLSHNRLR-A 477

Query: 380 LPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNG-TIPESFGKLSEL 438
           LP +L  L+ L+ L+ S N+   ++   + NL  L++L L  N +      +       L
Sbjct: 478 LPPALAALRCLEVLQASDNAL-ENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535

Query: 439 VDANLLQN 446
           V  NL  N
Sbjct: 536 VLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.7 bits (136), Expect = 3e-08
 Identities = 52/283 (18%), Positives = 85/283 (30%), Gaps = 30/283 (10%)

Query: 614 LSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPS 673
           + W    GR   S   L DL   S+        F   W  S       +  +        
Sbjct: 285 VEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPE-CWCR 343

Query: 674 SFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFML 733
              +   L    LS    +  +   L++C  L  ++        ++ L          M 
Sbjct: 344 DSATDEQLFRCELSVEKSTV-LQSELESCKELQELEPENKWCLLTIIL---------LMR 393

Query: 734 RLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWR 793
            L   L   +  Q    L+ +  +  ++ +      R    L   V        + L   
Sbjct: 394 ALDPLLYEKETLQYFSTLKAVDPMRAAYLDD----LRSKFLLENSVLKMEYADVRVLHLA 449

Query: 794 VVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSS 853
                   +   +  V  +DLS N L   +P  +  L  L +L  S N L   +   +++
Sbjct: 450 HKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVAN 506

Query: 854 LASLSKLNLSFNNLA--------GKIPSLPNFNDPSIYEGNPL 888
           L  L +L L  N L            P L   N     +GN L
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN----LQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.1 bits (119), Expect = 3e-06
 Identities = 46/306 (15%), Positives = 84/306 (27%), Gaps = 46/306 (15%)

Query: 557 QMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSW 616
             + P     D    H    +   S +  E  L  +R       +  +   +L R  LS 
Sbjct: 301 LCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPEC-WCRDSATD-EQLFRCELSV 358

Query: 617 NQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFG 676
            + +  + S + + ++LQ L   +                      +    +     +  
Sbjct: 359 EKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK--AVD 415

Query: 677 SLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLR 736
            +R+  +  L +  L             +  + L    L+    L   E L     L L 
Sbjct: 416 PMRAAYLDDLRSKFLLE-NSVLKMEYADVRVLHLAHKDLTVLCHL---EQLLLVTHLDLS 471

Query: 737 SNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVK 796
            N L   +P  L  L+ L ++  S N         +  ++ L          +L      
Sbjct: 472 HNRLR-ALPPALAALRCLEVLQASDNALE-----NVDGVANL---------PRL------ 510

Query: 797 GRNPEYSNIIADVNSIDLSWNNLTGQIPD--EIGNLSALHILNLSHNQLSGAIPQSLSSL 854
                          + L  N L  Q      + +   L +LNL  N L           
Sbjct: 511 -------------QELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA 556

Query: 855 ASLSKL 860
             L  +
Sbjct: 557 EMLPSV 562

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 65.8 bits (161), Expect = 8e-12
 Identities = 53/195 (27%), Positives = 81/195 (41%), Gaps = 28/195 (14%)

Query: 214 KLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSEN 273
           +L ++  +  ++     +Q +  LP++  L L   +L  I         T+++ L L+ N
Sbjct: 39  ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISA---LKELTNLTYLILTGN 95

Query: 274 SFNSAIPPWLF-SLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL- 331
               ++P  +F  LT+L +L L  N         F  L  L  L+L++N     QL  L 
Sbjct: 96  QL-QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-----QLQSLP 149

Query: 332 ---FGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSL---- 384
              F  L  L  LDLS N L       FD    +   L+ L L  N L     KS+    
Sbjct: 150 KGVFDKLTNLTELDLSYNQLQSLPEGVFD----KLTQLKDLRLYQNQL-----KSVPDGV 200

Query: 385 -GNLKNLQYLRLSGN 398
              L +LQY+ L  N
Sbjct: 201 FDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 55/199 (27%), Positives = 79/199 (39%), Gaps = 24/199 (12%)

Query: 231 LQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLF-SLTSL 289
               N L S+ ++  +   ++ +          ++  L L  N  +  I       LT+L
Sbjct: 34  AVTQNELNSIDQIIANNSDIKSVQ---GIQYLPNVRYLALGGNKLHD-IS--ALKELTNL 87

Query: 290 TKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL----FGILRRLKSLDLSA 345
           T L L  N         F  L  L+ L L  N     QL  L    F  L  L  L+L+ 
Sbjct: 88  TYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-----QLQSLPDGVFDKLTNLTYLNLAH 142

Query: 346 NNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSL-GNLKNLQYLRLSGNSFWGSI 404
           N L       FD    +  NL  LDLS N L+  LP+ +   L  L+ LRL  N    S+
Sbjct: 143 NQLQSLPKGVFD----KLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQL-KSV 196

Query: 405 PSSI-GNLSSLRKLDLSYN 422
           P  +   L+SL+ + L  N
Sbjct: 197 PDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 48/194 (24%), Positives = 75/194 (38%), Gaps = 35/194 (18%)

Query: 512 TELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSN 571
             +  +I  N  I  ++ G     L   + YL L  N++   +       NL  + L+ N
Sbjct: 41  NSIDQIIANNSDIK-SVQG--IQYLP-NVRYLALGGNKLH-DISALKELTNLTYLILTGN 95

Query: 572 HFEGTLPL----WSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSV 627
             + +LP       TN  EL L +N+    LP+ +   +  L  L L+ NQL   +P  V
Sbjct: 96  QLQ-SLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQ-SLPKGV 152

Query: 628 C-NLEDLQILSIRSNKLSGEFPNCWYHSQMFWGI----------DISNNSLTGSIPS-SF 675
              L +L  L +  N+L    P          G+           +  N L  S+P   F
Sbjct: 153 FDKLTNLTELDLSYNQLQ-SLPE---------GVFDKLTQLKDLRLYQNQLK-SVPDGVF 201

Query: 676 GSLRSLSVLLLSNN 689
             L SL  + L +N
Sbjct: 202 DRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 41/202 (20%), Positives = 80/202 (39%), Gaps = 33/202 (16%)

Query: 581 STNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGR--IPSSVCNLEDLQILSI 638
                +  L+    +          +  + ++  + + +     I      L +++ L++
Sbjct: 18  FAETIKANLKKKSVTD-AVTQNE--LNSIDQIIANNSDIKSVQGIQY----LPNVRYLAL 70

Query: 639 RSNKLS--GEFPNCWYHSQMFWGIDISNNSLTGSIPSS-FGSLRSLSVLLLSNNNLS--- 692
             NKL            + +     ++ N L  S+P+  F  L +L  L+L  N L    
Sbjct: 71  GGNKLHDISALKELTNLTYL----ILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLP 125

Query: 693 GGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQ----RL 748
            G+   L   T LT ++L  NQL  SLP  + + L++   L L  N L   +P+    +L
Sbjct: 126 DGVFDKL---TNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKL 180

Query: 749 CNLQNLHIIDLSHNNFSGAIPR 770
             L++L +    + N   ++P 
Sbjct: 181 TQLKDLRL----YQNQLKSVPD 198

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 24/141 (17%)

Query: 289 LTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGI--LRRLKSLDLSAN 346
             +L+         +    + LK  + L LS N      + K+  +  +  L+ L L  N
Sbjct: 27  KVELHGMIPPIE-KMDATLSTLKACKHLALSTN-----NIEKISSLSGMENLRILSLGRN 80

Query: 347 NLNGEVHEFFDGFSGRPNNLEYLDLSSN---SLEGELPKSLGNLKNLQYLRLSGN--SFW 401
            +     +  +      + LE L +S N   SL G     +  L NL+ L +S N  + W
Sbjct: 81  LI-----KKIENLDAVADTLEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKITNW 130

Query: 402 GSIPSSIGNLSSLRKLDLSYN 422
           G I   +  L  L  L L+ N
Sbjct: 131 GEI-DKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 5/110 (4%)

Query: 536 LSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWS-TNADELFLQDNRF 594
             +E   L      I+            + + LS+N+ E    L    N   L L  N  
Sbjct: 23  TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLI 82

Query: 595 SGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLS 644
                EN+ ++   L+ L++S+NQ++  + S +  L +L++L + +NK++
Sbjct: 83  KKI--ENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 35/147 (23%), Positives = 58/147 (39%), Gaps = 16/147 (10%)

Query: 232 QAVNMLPSLVELRLHYCQLQGI-PLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLT 290
             ++ L +   L L    ++ I  LS       ++ +L L  N     I        +L 
Sbjct: 42  ATLSTLKACKHLALSTNNIEKISSLS----GMENLRILSLGRNLI-KKIENLDAVADTLE 96

Query: 291 KLYLRWNFFTGHIPNEFANLKLLEVLDLSNN-LDLGGQLPKLFGILRRLKSLDLSANNLN 349
           +L++ +N     +      L  L VL +SNN +   G++ KL   L +L+ L L+ N L 
Sbjct: 97  ELWISYNQIA-SLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAA-LDKLEDLLLAGNPLY 153

Query: 350 GEVHEFFDGFSGRPN------NLEYLD 370
            +  E       R        NL+ LD
Sbjct: 154 NDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 17/132 (12%)

Query: 120 KINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSS 179
           K++ +L  LK    L LS N+ E  +I      ++NLR L+L  +    +I        +
Sbjct: 39  KMDATLSTLKACKHLALSTNNIE--KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADT 94

Query: 180 LQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPS 239
           L+ L +  +  +S SG           +  L +L++L +   K+ + G   +  +  L  
Sbjct: 95  LEELWISYNQIASLSG-----------IEKLVNLRVLYMSNNKITNWGE--IDKLAALDK 141

Query: 240 LVELRLHYCQLQ 251
           L +L L    L 
Sbjct: 142 LEDLLLAGNPLY 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 30/151 (19%), Positives = 50/151 (33%), Gaps = 42/151 (27%)

Query: 743 DIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEY 802
            +   L  L+    + LS NN        I +LS +           L            
Sbjct: 39  KMDATLSTLKACKHLALSTNNIE-----KISSLSGME---------NLRI---------- 74

Query: 803 SNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNL 862
                    + L  N +  +I +       L  L +S+NQ++      +  L +L  L +
Sbjct: 75  ---------LSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYM 122

Query: 863 SFNNLA-----GKIPSLPNFNDPSIYEGNPL 888
           S N +       K+ +L    D  +  GNPL
Sbjct: 123 SNNKITNWGEIDKLAALDKLEDLLL-AGNPL 152

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 62.4 bits (152), Expect = 8e-11
 Identities = 54/184 (29%), Positives = 70/184 (38%), Gaps = 24/184 (13%)

Query: 248 CQ---LQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIP 304
           CQ   L  +P  +P         LDL      +        LT LT L L +N       
Sbjct: 21  CQGKSLDSVPSGIP----ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76

Query: 305 NEFANLKLLEVLDLSNNLDLGGQLPKL----FGILRRLKSLDLSANNLNGEVHEFFDGFS 360
             F +L  L  L L+NN     QL  L    F  L +L  L L  N L       FD  +
Sbjct: 77  GVFDDLTELGTLGLANN-----QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT 131

Query: 361 GRPNNLEYLDLSSNSLEGELPKSL-GNLKNLQYLRLSGNSFWGSIPSSI-GNLSSLRKLD 418
                L+ L L++N L+  +P      L NLQ L LS N    S+P      L  L+ + 
Sbjct: 132 ----KLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL-QSVPHGAFDRLGKLQTIT 185

Query: 419 LSYN 422
           L  N
Sbjct: 186 LFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 60.1 bits (146), Expect = 4e-10
 Identities = 49/177 (27%), Positives = 66/177 (37%), Gaps = 21/177 (11%)

Query: 277 SAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL----F 332
           S IP          KL L+           F  L  L  L+L  N     QL  L    F
Sbjct: 31  SGIP------ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-----QLQTLSAGVF 79

Query: 333 GILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQY 392
             L  L +L L+ N L       FD        L+ L L  N L+         L  L+ 
Sbjct: 80  DDLTELGTLGLANNQLASLPLGVFD----HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135

Query: 393 LRLSGNSFWGSIPSSI-GNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSW 448
           LRL+ N    SIP+     L++L+ L LS N +      +F +L +L    L  N +
Sbjct: 136 LRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 51/199 (25%), Positives = 72/199 (36%), Gaps = 41/199 (20%)

Query: 541 TYLILSNNQIKGKLPRQMNS-PNLRSIDLSSNHFEGTLPL----WSTNADELFLQDNRFS 595
             L L +  +             L  ++L  N  + TL        T    L L +N+ +
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 596 GPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVC-NLEDLQILSIRSNKLSGEFPNCWYHS 654
             LP  +   + +L +LYL  NQL   +PS V   L  L+ L + +N+L           
Sbjct: 97  S-LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ---------- 144

Query: 655 QMFWGIDISNNSLTGSIPSS-FGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGN 713
                          SIP+  F  L +L  L LS N L      +      L +I L GN
Sbjct: 145 ---------------SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

Query: 714 QLSGS------LPLWISEN 726
           Q   S      L  WI EN
Sbjct: 190 QFDCSRCEILYLSQWIREN 208

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 41/159 (25%), Positives = 62/159 (38%), Gaps = 9/159 (5%)

Query: 610 QRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTG 669
           ++L L    L+    ++   L  L  L++  N+L       +        + ++NN L  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96

Query: 670 SIPSS-FGSLRSLSVLLLSNN---NLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISE 725
           S+P   F  L  L  L L  N   +L  G+   L   T L  + L  NQL  S+P    +
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL---TKLKELRLNTNQLQ-SIPAGAFD 152

Query: 726 NLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNF 764
            L++   L L +N L          L  L  I L  N F
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 40/157 (25%), Positives = 63/157 (40%), Gaps = 21/157 (13%)

Query: 181 QYLDLYADSFSSNSGSLALHAQNLNWLS----GLSSL------KLLNLGFVKLDHVGADW 230
           + LDL +   ++ S +       L WL+     L +L       L  LG + L +   + 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN---NQ 94

Query: 231 LQAV-----NMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLF- 284
           L ++     + L  L +L L   QL+ +P  + F   T +  L L+ N    +IP   F 
Sbjct: 95  LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV-FDRLTKLKELRLNTNQL-QSIPAGAFD 152

Query: 285 SLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNN 321
            LT+L  L L  N         F  L  L+ + L  N
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 52/210 (24%), Positives = 76/210 (36%), Gaps = 44/210 (20%)

Query: 661 DISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLP 720
           D    SL  S+PS  G       L L +  L+     + +  T LT ++L  NQL  +L 
Sbjct: 20  DCQGKSLD-SVPS--GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLS 75

Query: 721 LWISENLSSFFMLRLRSNLLS---GDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSA 777
             + ++L+    L L +N L+     +   L  L  L    L  N            L +
Sbjct: 76  AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL---YLGGNQ-----------LKS 121

Query: 778 LVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEI-GNLSALHIL 836
           L  G    VF +L                  +  + L+ N L   IP      L+ L  L
Sbjct: 122 LPSG----VFDRL----------------TKLKELRLNTNQLQ-SIPAGAFDKLTNLQTL 160

Query: 837 NLSHNQLSGAIPQSLSSLASLSKLNLSFNN 866
           +LS NQL      +   L  L  + L F N
Sbjct: 161 SLSTNQLQSVPHGAFDRLGKLQTITL-FGN 189

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 63.0 bits (153), Expect = 2e-10
 Identities = 52/321 (16%), Positives = 106/321 (33%), Gaps = 34/321 (10%)

Query: 121 INPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSF-SSFSGEIPPQLGS-LS 178
           I+ +L  LK +    + ++D +   + +   +  +L  L L   S F+ +    + +   
Sbjct: 107 ISNNLRQLKSVHFRRMIVSDLDLDRLAK--ARADDLETLKLDKCSGFTTDGLLSIVTHCR 164

Query: 179 SLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQA-VNML 237
            ++ L +   SFS   G   LH          +SL++LN    +   +    L+      
Sbjct: 165 KIKTLLMEESSFSEKDGK-WLHEL----AQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219

Query: 238 PSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLR-- 295
            SLV +++   ++  + L   F    ++        + +  +P    +L    KL     
Sbjct: 220 RSLVSVKVGDFEI--LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGL 277

Query: 296 WNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEF 355
                  +P  F     +  LDL   L        L      L+ L+      +  +   
Sbjct: 278 SYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVL 337

Query: 356 FDGFSGRPNNLEYLDLSSNSLEGELPKSLG------------NLKNLQYLRLSGNSF--- 400
                     L+ L +   + E  +    G              + L+Y+ +  +     
Sbjct: 338 AQYCK----QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE 393

Query: 401 -WGSIPSSIGNLSSLRKLDLS 420
              SI + + NL   R + L 
Sbjct: 394 SLESIGTYLKNLCDFRLVLLD 414

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 53.4 bits (128), Expect = 3e-07
 Identities = 68/469 (14%), Positives = 128/469 (27%), Gaps = 78/469 (16%)

Query: 207 LSGLSSLKLLNLGFVKLDHVGADWLQAV-NMLPSLVELRLHYCQLQGIPL-SLPFINFTS 264
           L G     + NL           W+  + N L  L  +      +  + L  L       
Sbjct: 80  LKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADD 139

Query: 265 ISVLDLS--ENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFA----NLKLLEVLDL 318
           +  L L          +   +     +  L +  + F+            +   LEVL+ 
Sbjct: 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNF 199

Query: 319 S----NNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSN 374
                  +     L  +    R L S+ +              GF     NLE     S 
Sbjct: 200 YMTEFAKISPKD-LETIARNCRSLVSVKVG-----DFEILELVGFFKAAANLEEFCGGSL 253

Query: 375 SLEGELPKSLGNLKNLQYLRLSGNSFWG--SIPSSIGNLSSLRKLDLSYNGMNGTIPESF 432
           + +  +P+   NL   + L   G S+ G   +P      + +RKLDL Y           
Sbjct: 254 NEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYA---------- 303

Query: 433 GKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKS 492
                L   +                    LE          + +  ++       +LK 
Sbjct: 304 ----LLETEDHCT----------LIQKCPNLEVLETRNVIGDRGLEVLAQYCK---QLKR 346

Query: 493 IQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKG 552
           ++IE              +  ++   L  +           ++   E+ Y+ +  + I  
Sbjct: 347 LRIERG---ADEQGMEDEEGLVSQRGLIAL-----------AQGCQELEYMAVYVSDITN 392

Query: 553 KLPRQM--NSPNLRSIDLSSNHFEGTLPLWSTNAD--------------ELFLQDNRFSG 596
           +    +     NL    L     E  +     +                  +L+    + 
Sbjct: 393 ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD 452

Query: 597 PLPENIGSLMPRLQRLYLSWNQLSGR-IPSSVCNLEDLQILSIRSNKLS 644
                IG   P ++ + L +   S   +        +LQ L +R    S
Sbjct: 453 LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 46/316 (14%), Positives = 93/316 (29%), Gaps = 46/316 (14%)

Query: 135 DLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNS 194
            + + DFE  E+  +F    NL        +    +P +  +L   + L     S+   +
Sbjct: 224 SVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN 283

Query: 195 GSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQ----L 250
               L           + ++ L+L +  L     D    +   P+L  L          L
Sbjct: 284 EMPIL-------FPFAAQIRKLDLLYALL--ETEDHCTLIQKCPNLEVLETRNVIGDRGL 334

Query: 251 QGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLT------------SLTKLYLRWNF 298
           + +           +  L +   +    +      ++             L  + +  + 
Sbjct: 335 EVLAQYCK-----QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSD 389

Query: 299 FT----GHIPNEFANLKLLEVLDLSNNLDLGGQ-----LPKLFGILRRLKSLDLSAN--N 347
            T      I     NL    ++ L     +        +  L    ++L+          
Sbjct: 390 ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGG 449

Query: 348 LNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGE-LPKSLGNLKNLQYLRLSGNSF-WGSIP 405
           L      +         N+ ++ L       E L +      NLQ L + G  F   +I 
Sbjct: 450 LTDLGLSYI---GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA 506

Query: 406 SSIGNLSSLRKLDLSY 421
           +++  L SLR L +  
Sbjct: 507 AAVTKLPSLRYLWVQG 522

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.9 bits (111), Expect = 3e-05
 Identities = 58/469 (12%), Positives = 133/469 (28%), Gaps = 65/469 (13%)

Query: 336 RRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSL--EGELPKSLGNLKNLQYL 393
            R    +L   N  G V  +    S     L+ +      +        +     +L+ L
Sbjct: 84  PRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143

Query: 394 RLSGNSFWG--SIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSE----LVDANLLQNS 447
           +L   S +    + S + +   ++ L +  +  +    +   +L++    L   N     
Sbjct: 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE 203

Query: 448 WEGILQES---QFMNLKRLESFRLTTEP--TKKFVFNVSYNWVPPFRLKSIQIENCQVGP 502
           +  I  +       N + L S ++           F  + N           +      P
Sbjct: 204 FAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLE---EFCGGSLNEDIGMP 260

Query: 503 SFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQM--NS 560
              + L    +L  + L  +G  + +P       +++I  L L    ++ +    +    
Sbjct: 261 EKYMNLVFPRKLCRLGLSYMG-PNEMPI--LFPFAAQIRKLDLLYALLETEDHCTLIQKC 317

Query: 561 PNLRSIDLSSN-------------------HFEGTLPLWSTNADELFLQDNRFSGPLPEN 601
           PNL  ++  +                      E          +E  +            
Sbjct: 318 PNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL-----IA 372

Query: 602 IGSLMPRLQRLYLSWNQLSGR----IPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMF 657
           +      L+ + +  + ++      I + + NL D +++ +   +               
Sbjct: 373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT------------ 420

Query: 658 WGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSG 717
              D+  ++   S+      LR  +  L        G+    Q    +  + LG    S 
Sbjct: 421 ---DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD 477

Query: 718 SLPLWISENLSSFFMLRLRSNLLSGDIPQRLC-NLQNLHIIDLSHNNFS 765
              +  S    +   L +R    S          L +L  + +     S
Sbjct: 478 EGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 60/361 (16%), Positives = 113/361 (31%), Gaps = 55/361 (15%)

Query: 134 LDLSLNDFEGAE-IPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSL-----SSLQYLDLYA 187
           ++  L    G+  + E+      +  L+LS ++       +L        +S+  L+L  
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60

Query: 188 DSFSSNSGSL---ALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLP--SLVE 242
           +S    +       L A         +++  LNL    L +  +D L         ++  
Sbjct: 61  NSLGFKNSDELVQILAAIP-------ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITV 113

Query: 243 LRLHYCQL-----QGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSL-----TSLTKL 292
           L L +             +   +   SI+ L+L  N         L  +      ++  L
Sbjct: 114 LDLGWNDFSSKSSSEFKQAFSNLP-ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172

Query: 293 YLRWNFFT----GHIPNEFANL-KLLEVLDLSNNL--DLGGQL--PKLFGILRRLKSLDL 343
            LR N         +    A++   +  LDLS NL               I   + SL+L
Sbjct: 173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNL 232

Query: 344 SANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEG-------ELPKSLGNLKNLQYLRLS 396
             N L+G   E          +L+ + L  + ++         L  +  N++ +  +  +
Sbjct: 233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKN 292

Query: 397 GNSFWGSIPSSIGNL-----SSLRKLDLSYNGM-----NGTIPESFGKLSELVDANLLQN 446
           G     S    I NL            L    +     + T  E      EL ++     
Sbjct: 293 GKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCK 352

Query: 447 S 447
            
Sbjct: 353 P 353

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 61/381 (16%), Positives = 107/381 (28%), Gaps = 89/381 (23%)

Query: 533 FSKLSSEITYLILSNNQIKGKLPR------QMNSPNLRSIDLSSNHFEGT--------LP 578
           F+ +   +T L LS N +                 ++ S++LS N             L 
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 579 LWSTNADELFLQDNRFSGP----LPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNL---- 630
               N   L L  N  S      L + + ++   +  L L WN  S +  S         
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 631 -EDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNN 689
              +  L++R N L                   S++ L   + +   ++ SL+   L  N
Sbjct: 137 PASITSLNLRGNDLG----------------IKSSDELIQILAAIPANVNSLN---LRGN 177

Query: 690 NLSGGIPCSL-----QNCTGLTSIDLGGNQLSGSLPLWISE----NLSSFFMLRLRSNLL 740
           NL+      L          +TS+DL  N L       ++       +    L L  N L
Sbjct: 178 NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237

Query: 741 SGDIPQRLCNL----QNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVK 796
            G   + L  L    ++L  + L ++            L A                   
Sbjct: 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK------------ 285

Query: 797 GRNPEYSNIIADVNSIDLSWNNLTGQ--------IPDEIGNLSALHILNLSHNQLSGAI- 847
                       +  +D +   +           I +  G      +LN           
Sbjct: 286 ------------IILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQT 333

Query: 848 -PQSLSSLASLSKLNLSFNNL 867
             + L+    L +   +   L
Sbjct: 334 NIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 40/254 (15%), Positives = 83/254 (32%), Gaps = 36/254 (14%)

Query: 131 LDTLDLSLNDF--EGAE-IPEYFGQL-KNLRYLNLSFSSFSGEIPPQLGSL-----SSLQ 181
           +  LDL  NDF  + +    + F  L  ++  LNL  +    +   +L  +     +++ 
Sbjct: 111 ITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170

Query: 182 YLDLYADSFSSNSG-SLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAV--NMLP 238
            L+L  ++ +S +   LA    ++      +S+  L+L    L       L  +  ++  
Sbjct: 171 SLNLRGNNLASKNCAELAKFLASIP-----ASVTSLDLSANLLGLKSYAELAYIFSSIPN 225

Query: 239 SLVELRLHYCQLQG---IPLSLPFINFTSISVLDLSENSFNS-------AIPPWLFSLTS 288
            +V L L    L G     L L   +   +  + L  +   +       A+     ++  
Sbjct: 226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK 285

Query: 289 LTKLYLRWNFFTGHIPNEFANL-----KLLEVLDLSNNLDL----GGQLPKLFGILRRLK 339
           +  +               +NL        +V  L N   +         +   I   L+
Sbjct: 286 IILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELR 345

Query: 340 SLDLSANNLNGEVH 353
               +   L    H
Sbjct: 346 ESIQTCKPLLEHHH 359

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 43/283 (15%), Positives = 84/283 (29%), Gaps = 45/283 (15%)

Query: 131 LDTLDLSLNDFEGAEIPEYFGQLKN----LRYLNLSFSSFSGEIPPQLGSL-----SSLQ 181
           + +L+LS N        E    L      +  L+L ++ FS +   +         +S+ 
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141

Query: 182 YLDLYADSFSSNSGSL---ALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAV--NM 236
            L+L  +     S       L A         +++  LNL    L       L     ++
Sbjct: 142 SLNLRGNDLGIKSSDELIQILAAIP-------ANVNSLNLRGNNLASKNCAELAKFLASI 194

Query: 237 LPSLVELRLHYCQL-----QGIPLSLPFINFTSISVLDLSENSFNS----AIPPWLFSLT 287
             S+  L L    L       +      I    +  L+L  N  +      +     SL 
Sbjct: 195 PASVTSLDLSANLLGLKSYAELAYIFSSIP-NHVVSLNLCLNCLHGPSLENLKLLKDSLK 253

Query: 288 SLTKLYLRWNFFTG-------HIPNEFANLKLLEVLDLSNNLDLGGQLPKLFG-----IL 335
            L  +YL ++            +   F N++ + ++D +   ++              + 
Sbjct: 254 HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK-EIHPSHSIPISNLIRELS 312

Query: 336 RRLKSLDLSANNLNGEV-HEFFDGFSGRPNNLEYLDLSSNSLE 377
            +     L    L     H+        P+ L     +   L 
Sbjct: 313 GKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 39/204 (19%), Positives = 68/204 (33%), Gaps = 50/204 (24%)

Query: 688 NNNLSGGIPCS-----LQNCTGLTSIDLGGNQLSGSLPLWISENLSSFF----MLRLRSN 738
           N  L+     +          G+TS+DL  N L     + + +  ++       L L  N
Sbjct: 2   NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN 61

Query: 739 LLSGDIPQRLC-----NLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWR 793
            L       L         N+  ++LS N  S      +     L     +         
Sbjct: 62  SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV--KTLAAIPFT--------- 110

Query: 794 VVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNL-----SALHILNLSHNQLSG--- 845
                          +  +DL WN+ + +   E         +++  LNL  N L     
Sbjct: 111 ---------------ITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS 155

Query: 846 -AIPQSLSSL-ASLSKLNLSFNNL 867
             + Q L+++ A+++ LNL  NNL
Sbjct: 156 DELIQILAAIPANVNSLNLRGNNL 179

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 55/283 (19%), Positives = 92/283 (32%), Gaps = 22/283 (7%)

Query: 75  CCKWNGVYCNNQSGHVTQLNLRNPYQLINGGVGDSTAYKGSCLGGKINPSLLH---LKYL 131
           C +W  +  +        L  +N +  + G +         C    ++  L        +
Sbjct: 36  CKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRV 95

Query: 132 DTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFS 191
             +DLS +  E + +     Q   L+ L+L     S  I   L   S+L  L+L   S  
Sbjct: 96  QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF 155

Query: 192 SNSGSLALHAQNLNWLSGLSSLKLLNLGF-VKLDHVGADWLQAVNMLPSLVELRLHYC-- 248
           S      L       LS  S L  LNL +               ++  ++ +L L     
Sbjct: 156 SEFALQTL-------LSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNLSGYRK 207

Query: 249 QLQGIPLSLPFINFTSISVLDLSENSF--NSAIPPWLFSLTSLTKLYLRW-NFFTGHIPN 305
            LQ   LS       ++  LDLS++    N       F L  L  L L            
Sbjct: 208 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF-QEFFQLNYLQHLSLSRCYDIIPETLL 266

Query: 306 EFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNL 348
           E   +  L+ L +   +  G     L  +   L  L ++ ++ 
Sbjct: 267 ELGEIPTLKTLQVFGIVPDGT----LQLLKEALPHLQINCSHF 305

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 34/193 (17%), Positives = 67/193 (34%), Gaps = 11/193 (5%)

Query: 237 LPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRW 296
              +  + L    ++   L       + +  L L     +  I   L   ++L +L L  
Sbjct: 92  PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 151

Query: 297 --NFFTGHIPNEFANLKLLEVLDLS--NNLDLGGQLPKLFGILRRLKSLDLSANNLNGEV 352
              F    +    ++   L+ L+LS   +         +  +   +  L+LS       +
Sbjct: 152 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS--GYRKNL 209

Query: 353 -HEFFDGFSGRPNNLEYLDLSS-NSLEGELPKSLGNLKNLQYLRLSGNSF--WGSIPSSI 408
                     R  NL +LDLS    L+ +  +    L  LQ+L LS        ++   +
Sbjct: 210 QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-LEL 268

Query: 409 GNLSSLRKLDLSY 421
           G + +L+ L +  
Sbjct: 269 GEIPTLKTLQVFG 281

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 46/160 (28%), Positives = 66/160 (41%), Gaps = 23/160 (14%)

Query: 247 YCQ---LQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLF-SLTSLTKLYLRWNFFTGH 302
            C+      +P  +P    T+  +L L +N     + P +F SL +L +LYL  N     
Sbjct: 25  DCRSKRHASVPAGIP----TNAQILYLHDNQITK-LEPGVFDSLINLKELYLGSNQLGAL 79

Query: 303 IPNEFANLKLLEVLDLSNNLDLGGQLPKL----FGILRRLKSLDLSANNLNGEVHEFFDG 358
               F +L  L VLDL  N     QL  L    F  L  LK L +  N L  E+    + 
Sbjct: 80  PVGVFDSLTQLTVLDLGTN-----QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE- 132

Query: 359 FSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGN 398
              R  +L +L L  N L+     +   L +L +  L GN
Sbjct: 133 ---RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 48/141 (34%), Positives = 60/141 (42%), Gaps = 16/141 (11%)

Query: 287 TSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL----FGILRRLKSLD 342
           T+   LYL  N  T   P  F +L  L+ L L +N     QL  L    F  L +L  LD
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-----QLGALPVGVFDSLTQLTVLD 94

Query: 343 LSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWG 402
           L  N L       FD    R  +L+ L +  N L  ELP+ +  L +L +L L  N    
Sbjct: 95  LGTNQLTVLPSAVFD----RLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL-K 148

Query: 403 SIPSSI-GNLSSLRKLDLSYN 422
           SIP      LSSL    L  N
Sbjct: 149 SIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 4/130 (3%)

Query: 610 QRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTG 669
           Q LYL  NQ++   P    +L +L+ L + SN+L       +        +D+  N LT 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT- 101

Query: 670 SIPSS-FGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLS 728
            +PS+ F  L  L  L +  N L+  +P  ++  T LT + L  NQL  S+P    + LS
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLS 159

Query: 729 SFFMLRLRSN 738
           S     L  N
Sbjct: 160 SLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 34/137 (24%), Positives = 48/137 (35%), Gaps = 26/137 (18%)

Query: 360 SGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSI-GNLSSLRKLD 418
           +G P N + L L  N +    P    +L NL+ L L  N   G++P  +  +L+ L  LD
Sbjct: 36  AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLD 94

Query: 419 LSYN-------------------GMNG----TIPESFGKLSELVDANLLQNSWEGILQES 455
           L  N                    M       +P    +L+ L    L QN  + I    
Sbjct: 95  LGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSI-PHG 153

Query: 456 QFMNLKRLESFRLTTEP 472
            F  L  L    L   P
Sbjct: 154 AFDRLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 39/155 (25%), Positives = 60/155 (38%), Gaps = 34/155 (21%)

Query: 541 TYLILSNNQIKGKLPRQMNS-PNLRSIDLSSNHFEGTLPLW----STNADELFLQDNRFS 595
             L L +NQI    P   +S  NL+ + L SN     LP+      T    L L  N+ +
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 596 GPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQ 655
             LP  +   +  L+ L++  N+L+  +P  +  L  L  L++  N+L            
Sbjct: 102 V-LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK----------- 148

Query: 656 MFWGIDISNNSLTGSIPS-SFGSLRSLSVLLLSNN 689
                         SIP  +F  L SL+   L  N
Sbjct: 149 --------------SIPHGAFDRLSSLTHAYLFGN 169

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 24/121 (19%)

Query: 287 TSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL----FGILRRLKSLD 342
             +T+LYL  N FT  +P E +N K L ++DLSNN     ++  L    F  + +L +L 
Sbjct: 31  RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNN-----RISTLSNQSFSNMTQLLTLI 84

Query: 343 LSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSL-----GNLKNLQYLRLSG 397
           LS N L       FDG      +L  L L  N +       +      +L  L +L +  
Sbjct: 85  LSYNRLRCIPPRTFDGL----KSLRLLSLHGNDI-----SVVPEGAFNDLSALSHLAIGA 135

Query: 398 N 398
           N
Sbjct: 136 N 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 803 SNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNL 862
             I  DV  + L  N  T  +P E+ N   L +++LS+N++S    QS S++  L  L L
Sbjct: 27  KGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85

Query: 863 SFNNLAGKIPSLPN 876
           S+N L      +P 
Sbjct: 86  SYNRLR----CIPP 95

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 26/129 (20%)

Query: 610 QRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTG 669
             LYL  NQ +  +P  + N + L ++ + +N++S                     +L+ 
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS---------------------TLS- 70

Query: 670 SIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSS 729
               SF ++  L  L+LS N L    P +      L  + L GN +S  +P     +LS+
Sbjct: 71  --NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSA 127

Query: 730 FFMLRLRSN 738
              L + +N
Sbjct: 128 LSHLAIGAN 136

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.0 bits (133), Expect = 7e-09
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 17/122 (13%)

Query: 306 EFANLKLLEVLDLSNNLDLGGQLPKLFGI---LRRLKSLDLSANNLNGEVHEFFDGFSGR 362
           ++ N      LDL        ++P +  +   L +  ++D S N +        DGF   
Sbjct: 14  QYTNAVRDRELDLRGY-----KIPVIENLGATLDQFDAIDFSDNEI-----RKLDGFPLL 63

Query: 363 PNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGN--SFWGSIPSSIGNLSSLRKLDLS 420
              L+ L +++N +          L +L  L L+ N     G +   + +L SL  L + 
Sbjct: 64  RR-LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCIL 121

Query: 421 YN 422
            N
Sbjct: 122 RN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 629 NLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSN 688
           N    + L +R  K+     N       F  ID S+N +   +   F  LR L  LL++N
Sbjct: 17  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNN 73

Query: 689 NNLSGGIPCSLQNCTGLTSIDLGGNQLS 716
           N +        Q    LT + L  N L 
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 6/102 (5%)

Query: 545 LSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGT--LPLWSTNADELFLQDNRFSGPLPENI 602
           L+   I+ +  +  N+   R +DL          L       D +   DN     L +  
Sbjct: 4   LTAELIE-QAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-KL-DGF 60

Query: 603 GSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLS 644
             L  RL+ L ++ N++          L DL  L + +N L 
Sbjct: 61  PLL-RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 26/114 (22%), Positives = 36/114 (31%), Gaps = 8/114 (7%)

Query: 235 NMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYL 294
                  EL L   ++  I  +L          +D S+N            L  L  L +
Sbjct: 16  TNAVRDRELDLRGYKIPVIE-NLG-ATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLV 71

Query: 295 RWNFFTGHIPNEFANLKLLEVLDLSNNL--DLGGQLPKLFGILRRLKSLDLSAN 346
             N            L  L  L L+NN   +L G L  L   L+ L  L +  N
Sbjct: 72  NNNRICRIGEGLDQALPDLTELILTNNSLVEL-GDLDPLAS-LKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 28/137 (20%), Positives = 46/137 (33%), Gaps = 36/137 (26%)

Query: 732 MLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLI 791
           M++L + L+     Q   N      +DL        IP  I NL A           Q  
Sbjct: 1   MVKLTAELIE-QAAQ-YTNAVRDRELDLRGYK----IPV-IENLGAT--------LDQFD 45

Query: 792 WRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSL 851
                               ID S N +  ++      L  L  L +++N++        
Sbjct: 46  A-------------------IDFSDNEIR-KLDG-FPLLRRLKTLLVNNNRICRIGEGLD 84

Query: 852 SSLASLSKLNLSFNNLA 868
            +L  L++L L+ N+L 
Sbjct: 85  QALPDLTELILTNNSLV 101

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 48/157 (30%), Positives = 61/157 (38%), Gaps = 17/157 (10%)

Query: 246 HYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPN 305
           +      +P  +P       + LDL  NS  S        LTSLT+LYL  N        
Sbjct: 15  YSQGRTSVPTGIP----AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG 70

Query: 306 EFANLKLLEVLDLSNNLDLGGQLPKL----FGILRRLKSLDLSANNLNGEVHEFFDGFSG 361
            F  L  L  L+LS N     QL  L    F  L +LK L L+ N L       FD    
Sbjct: 71  VFNKLTSLTYLNLSTN-----QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFD---- 121

Query: 362 RPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGN 398
           +   L+ L L  N L+         L +LQY+ L  N
Sbjct: 122 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 42/142 (29%), Positives = 57/142 (40%), Gaps = 17/142 (11%)

Query: 287 TSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL----FGILRRLKSLD 342
              T L L  N         F  L  L  L L  N     +L  L    F  L  L  L+
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-----KLQSLPNGVFNKLTSLTYLN 82

Query: 343 LSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSL-GNLKNLQYLRLSGNSFW 401
           LS N L    +  FD    +   L+ L L++N L+  LP  +   L  L+ LRL  N   
Sbjct: 83  LSTNQLQSLPNGVFD----KLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQL- 136

Query: 402 GSIPSSI-GNLSSLRKLDLSYN 422
            S+P  +   L+SL+ + L  N
Sbjct: 137 KSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 37/135 (27%), Positives = 50/135 (37%), Gaps = 9/135 (6%)

Query: 632 DLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNL 691
               L + +N L       +        + +  N L       F  L SL+ L LS N L
Sbjct: 29  QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88

Query: 692 SG---GIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQR- 747
                G+   L   T L  + L  NQL  SLP  + + L+    LRL  N L   +P   
Sbjct: 89  QSLPNGVFDKL---TQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKS-VPDGV 143

Query: 748 LCNLQNLHIIDLSHN 762
              L +L  I L  N
Sbjct: 144 FDRLTSLQYIWLHDN 158

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.7 bits (131), Expect = 7e-08
 Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 5/98 (5%)

Query: 303 IPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGR 362
             +     + L  L + N   L     +    L  L++L +  + L   V    D F   
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAP--DAFHFT 79

Query: 363 PNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSF 400
           P  L  L+LS N+LE  L        +LQ L LSGN  
Sbjct: 80  P-RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.4 bits (130), Expect = 7e-08
 Identities = 27/104 (25%), Positives = 36/104 (34%), Gaps = 15/104 (14%)

Query: 278 AIPPWLFSLTSLTKLYLRWNFFTGHIPNE-FANLKLLEVLDLSNNLDLGGQL----PKLF 332
                L    +LT+LY+       H+       L  L  L +  +      L    P  F
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-----GLRFVAPDAF 76

Query: 333 GILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSL 376
               RL  L+LS N L     +   G S     L+ L LS N L
Sbjct: 77  HFTPRLSRLNLSFNALESLSWKTVQGLS-----LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 3e-06
 Identities = 15/107 (14%), Positives = 32/107 (29%), Gaps = 4/107 (3%)

Query: 659 GIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPC-SLQNCTGLTSIDLGGNQLSG 717
           G+  + +              +L+ L + N      +    L+    L ++ +  + L  
Sbjct: 12  GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR- 69

Query: 718 SLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNF 764
            +             L L  N L   +  +     +L  + LS N  
Sbjct: 70  FVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.0 bits (116), Expect = 4e-06
 Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 11/86 (12%)

Query: 812 IDLSWNNLTGQIPDE-IGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGK 870
           + +        +    +  L  L  L +  + L    P +      LS+LNLSFN L   
Sbjct: 36  LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-- 93

Query: 871 IPSLPN--FNDPSI----YEGNPLLC 890
             SL        S+      GNPL C
Sbjct: 94  --SLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 9e-06
 Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 4/97 (4%)

Query: 329 PKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLK 388
                    L  L +        +        G    L  L +  + L    P +     
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLEL--RDLRGLGE-LRNLTIVKSGLRFVAPDAFHFTP 80

Query: 389 NLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMN 425
            L  L LS N+   S+        SL++L LS N ++
Sbjct: 81  RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 3/95 (3%)

Query: 379 ELPKSLGNLKNLQYLRLSGNSFWGSIPS-SIGNLSSLRKLDLSYNGMNGTIPESFGKLSE 437
           +    L   +NL  L +        +    +  L  LR L +  +G+    P++F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 438 LVDANLLQNSWEGILQESQFMNLKRLESFRLTTEP 472
           L   NL  N+ E  L       L  L+   L+  P
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGLS-LQELVLSGNP 114

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 7e-04
 Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 4/109 (3%)

Query: 231 LQAVNMLPSLVELRL-HYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFS-LTS 288
           L  +    +L EL + +   LQ + L         +  L + ++     + P  F     
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKSGL-RFVAPDAFHFTPR 81

Query: 289 LTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRR 337
           L++L L +N            L L E++   N L     L  L      
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEE 130

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 9e-04
 Identities = 20/132 (15%), Positives = 39/132 (29%), Gaps = 33/132 (25%)

Query: 737 SNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVK 796
           +   + D    L   +NL  + + +      +                   + L      
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLE--------------LRDLRGL------ 55

Query: 797 GRNPEYSNIIADVNSIDLSWNNLTGQIPDEI-GNLSALHILNLSHNQLSGAIPQSLSSLA 855
                      ++ ++ +  + L   +  +       L  LNLS N L  ++        
Sbjct: 56  ----------GELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGL 103

Query: 856 SLSKLNLSFNNL 867
           SL +L LS N L
Sbjct: 104 SLQELVLSGNPL 115

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 30/116 (25%), Positives = 42/116 (36%), Gaps = 9/116 (7%)

Query: 309 NLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEY 368
               +  L L N     G++  L      L+ L L    L              P  L+ 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-----ISVSNLPKLPK-LKK 75

Query: 369 LDLSSNSLEGELPKSLGNLKNLQYLRLSGNSF--WGSIPSSIGNLSSLRKLDLSYN 422
           L+LS N + G L      L NL +L LSGN      ++   +  L  L+ LDL   
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 32/111 (28%), Positives = 40/111 (36%), Gaps = 4/111 (3%)

Query: 237 LPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRW 296
             ++ EL L  C+     +      F ++  L L      S     L  L  L KL L  
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLELSE 80

Query: 297 NFFTGHIPNEFANLKLLEVLDLSNN-LDLGGQLPKLFGILRRLKSLDLSAN 346
           N   G +      L  L  L+LS N L     L  L   L  LKSLDL   
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKK-LECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 29/132 (21%), Positives = 47/132 (35%), Gaps = 27/132 (20%)

Query: 586 ELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSG 645
           EL L + + +    E + +    L+ L L    L      SV NL  L  L         
Sbjct: 28  ELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-----SVSNLPKLPKLKK------- 75

Query: 646 EFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSG-GIPCSLQNCTG 704
                         +++S N + G +      L +L+ L LS N L        L+    
Sbjct: 76  --------------LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLEC 121

Query: 705 LTSIDLGGNQLS 716
           L S+DL   +++
Sbjct: 122 LKSLDLFNCEVT 133

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 14/105 (13%)

Query: 242 ELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLF-SLTSLTKLYLRWNFFT 300
           EL L+  +L  I     F     +  L+L  N   + I P  F   + + +L L  N   
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL-TGIEPNAFEGASHIQELQLGENKIK 91

Query: 301 GHIPNE-FANLKLLEVLDLSNNLDLGGQL---PKLFGILRRLKSL 341
             I N+ F  L  L+ L+L +N     Q+       G    L SL
Sbjct: 92  -EISNKMFLGLHQLKTLNLYDN-----QISCVMP--GSFEHLNSL 128

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 14/119 (11%)

Query: 287 TSLTKLYLRWNFFTGHIPN-EFANLKLLEVLDLSNNLDLGGQLPKL----FGILRRLKSL 341
              T+L L  N       +  F  L  L  L+L  N     QL  +    F     ++ L
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-----QLTGIEPNAFEGASHIQEL 83

Query: 342 DLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSF 400
            L  N +    ++ F G       L+ L+L  N +   +P S  +L +L  L L+ N F
Sbjct: 84  QLGENKIKEISNKMFLGLH----QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 33/152 (21%), Positives = 55/152 (36%), Gaps = 33/152 (21%)

Query: 582 TNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVC-NLEDLQILSIRS 640
            +  EL L DN       + +   +P L +L L  NQL+  I  +       +Q L +  
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGE 87

Query: 641 NKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPS-SFGSLRSLSVLLLSNNNLSGGIPCSL 699
           NK+                           I +  F  L  L  L L +N +S  +P S 
Sbjct: 88  NKIK-------------------------EISNKMFLGLHQLKTLNLYDNQISCVMPGSF 122

Query: 700 QNCTGLTSIDLGGNQLSGS-----LPLWISEN 726
           ++   LTS++L  N  + +        W+ + 
Sbjct: 123 EHLNSLTSLNLASNPFNCNCHLAWFAEWLRKK 154

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 30/116 (25%), Positives = 44/116 (37%), Gaps = 9/116 (7%)

Query: 309 NLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEY 368
               ++ L L N+    G+L  L      L+ L      L             + N L+ 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-----TSIANLP-KLNKLKK 68

Query: 369 LDLSSNSLEGELPKSLGNLKNLQYLRLSGNSF--WGSIPSSIGNLSSLRKLDLSYN 422
           L+LS N + G L        NL +L LSGN      +I   +  L +L+ LDL   
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI-EPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 29/109 (26%), Positives = 37/109 (33%), Gaps = 4/109 (3%)

Query: 239 SLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNF 298
            + EL L   +     L      F  +  L        S I   L  L  L KL L  N 
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-IAN-LPKLNKLKKLELSDNR 75

Query: 299 FTGHIPNEFANLKLLEVLDLSNN-LDLGGQLPKLFGILRRLKSLDLSAN 346
            +G +         L  L+LS N +     +  L   L  LKSLDL   
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKK-LENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 7/99 (7%)

Query: 618 QLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGS 677
           +L  R PS   ++++L + + RSN+   E     +       +   N  LT SI ++   
Sbjct: 10  ELRNRTPS---DVKELVLDNSRSNEGKLEGLTDEFEE--LEFLSTINVGLT-SI-ANLPK 62

Query: 678 LRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLS 716
           L  L  L LS+N +SGG+    + C  LT ++L GN++ 
Sbjct: 63  LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 52.3 bits (124), Expect = 4e-07
 Identities = 33/238 (13%), Positives = 77/238 (32%), Gaps = 22/238 (9%)

Query: 200 HAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPF 259
                     L   KL +L  + +   G +     ++   +VE +  +   +G+      
Sbjct: 91  EEGVNLMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDID 150

Query: 260 INFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLS 319
                IS ++  +      + P L ++  L  L ++             NLK    L++ 
Sbjct: 151 FEEQEISWIEQVD------LSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLK---SLEII 201

Query: 320 NNLDLGGQLPKLF-GILRRLKSLDLSANNLNGEVHEFFDGFS-----GRPNNLEYLDLSS 373
           +       +  +    L  L+ L L     +       + F       R  NL++L +  
Sbjct: 202 SGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVD 261

Query: 374 NSLEGELPKSLGN---LKNLQYLRLSGNSFWGS----IPSSIGNLSSLRKLDLSYNGM 424
              +  + +       L  L+ + +S           +   +  +  L+ +++ YN +
Sbjct: 262 AEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.9 bits (110), Expect = 2e-05
 Identities = 23/163 (14%), Positives = 49/163 (30%), Gaps = 9/163 (5%)

Query: 116 CLGGKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLG 175
                ++P L  +  L+ L +         +        NL+ L +        +   + 
Sbjct: 159 IEQVDLSPVLDAMPLLNNLKIK----GTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDIL 214

Query: 176 S--LSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQA 233
              L +L+ L LY               + L       +LK L +   +  +V  +    
Sbjct: 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE 274

Query: 234 VNMLPSLVELRLHYCQLQ---GIPLSLPFINFTSISVLDLSEN 273
            ++LP L  + +    L       L         +  +++  N
Sbjct: 275 SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.6 bits (104), Expect = 1e-04
 Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 25/171 (14%)

Query: 699 LQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRL--CNLQNLHI 756
           L     L ++ + G   + S+      NL S   L + S  L   + + +   +L NL  
Sbjct: 168 LDAMPLLNNLKIKGTN-NLSIGKKPRPNLKS---LEIISGGLPDSVVEDILGSDLPNLEK 223

Query: 757 IDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADV------- 809
           + L            +     L   +    F  L W  +   + E  N++ ++       
Sbjct: 224 LVLYVGVEDYGFDGDMNVFRPLFSKDR---FPNLKWLGI--VDAEEQNVVVEMFLESDIL 278

Query: 810 ---NSIDLSWNNLTG----QIPDEIGNLSALHILNLSHNQLSGAIPQSLSS 853
               ++D+S   LT      + D +  +  L  +N+ +N LS  + + L  
Sbjct: 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 49.2 bits (118), Expect = 9e-07
 Identities = 33/116 (28%), Positives = 44/116 (37%), Gaps = 13/116 (11%)

Query: 287 TSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL----FGILRRLKSLD 342
           +S T+L L  N         F  L  L  L LS N     Q+  L    F  L +L  L 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-----QIQSLPDGVFDKLTKLTILY 82

Query: 343 LSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGN 398
           L  N L    +  FD    +   L+ L L +N L+         L +LQ + L  N
Sbjct: 83  LHENKLQSLPNGVFD----KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 41/136 (30%), Positives = 55/136 (40%), Gaps = 22/136 (16%)

Query: 247 YCQ---LQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLF-SLTSLTKLYLRWNFFTGH 302
            C    L  +P  +P    +S + L+L  N   S +P  +F  LT LTKL L  N     
Sbjct: 13  RCNSKGLTSVPTGIP----SSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSL 67

Query: 303 IPNEFANLKLLEVLDLSNNLDLGGQLPKL----FGILRRLKSLDLSANNLNGEVHEFFDG 358
               F  L  L +L L  N     +L  L    F  L +LK L L  N L       FD 
Sbjct: 68  PDGVFDKLTKLTILYLHEN-----KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFD- 121

Query: 359 FSGRPNNLEYLDLSSN 374
              R  +L+ + L +N
Sbjct: 122 ---RLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 5/115 (4%)

Query: 360 SGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSI-GNLSSLRKLD 418
           +G P++   L+L SN L+         L  L  L LS N    S+P  +   L+ L  L 
Sbjct: 24  TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILY 82

Query: 419 LSYNGMNGTIPES-FGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEP 472
           L  N +  ++P   F KL++L +  L  N  + +  +  F  L  L+   L T P
Sbjct: 83  LHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 237 LPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLF-SLTSLTKLYLR 295
           L  L +L L   Q+Q +P  + F   T +++L L EN   S +P  +F  LT L +L L 
Sbjct: 51  LTQLTKLSLSQNQIQSLPDGV-FDKLTKLTILYLHENKLQS-LPNGVFDKLTQLKELALD 108

Query: 296 WNFFTGHIPNEFANLKLLEVLDLSNN 321
            N         F  L  L+ + L  N
Sbjct: 109 TNQLKSVPDGIFDRLTSLQKIWLHTN 134

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 13/127 (10%)

Query: 309 NLKLLEVLDLSNNLDLGGQ-LPKLFGILRRLKSLDLSANNLNGE-VHEFFDGFSGRPNNL 366
               L+ ++L++   L    L  L  +  R + L L  N+L  E   +  D        +
Sbjct: 99  GRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQI 157

Query: 367 EYLDLSSNSLEGE----LPKSLGNLKNLQYLRLSGNSFWG-----SIPSSIGNLSSLRKL 417
             L LS+N L       L + L    ++ +L L      G      + + +     L++L
Sbjct: 158 TTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL-GDEGLELLAAQLDRNRQLQEL 216

Query: 418 DLSYNGM 424
           +++YNG 
Sbjct: 217 NVAYNGA 223

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 46/289 (15%), Positives = 80/289 (27%), Gaps = 57/289 (19%)

Query: 129 KYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSL-----SSLQYL 183
             LD ++L+    + A +          R L L  +S   E    L  L       +  L
Sbjct: 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTL 160

Query: 184 DLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWL-QAVNMLPSLVE 242
            L  +  ++   ++ +       L+G +S+  L+L    L   G + L   ++    L E
Sbjct: 161 RLSNNPLTAAGVAVLMEG-----LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQE 215

Query: 243 LRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFT-- 300
           L + Y                  + L L+                SL  L+L +N  +  
Sbjct: 216 LNVAYNGA------------GDTAALALARA---------AREHPSLELLHLYFNELSSE 254

Query: 301 -----GHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEF 355
                  +         + V               L  + R L S D +    + E    
Sbjct: 255 GRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLE---- 310

Query: 356 FDGFSGRPNNLEYLDLSSNSLEGELPKSLGNL----KNLQYLRLSGNSF 400
                     L   DL  +      P     L      ++ L     S 
Sbjct: 311 ----------LLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 50/263 (19%), Positives = 83/263 (31%), Gaps = 68/263 (25%)

Query: 175 GSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAV 234
             L   + LD     +   +   +            SSL+ LNL  V++  V    +   
Sbjct: 44  QVLPPSELLDHLFFHYEFQNQRFSAEVL--------SSLRQLNLAGVRMTPVKCTVV--A 93

Query: 235 NML----PSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLT 290
            +L     +L E+ L  CQL                +  L                    
Sbjct: 94  AVLGSGRHALDEVNLASCQL------------DPAGLRTLLP------------VFLRAR 129

Query: 291 KLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNG 350
           KL L+ N     +  E     L ++L L +                ++ +L LS N L  
Sbjct: 130 KLGLQLN----SLGPEACKD-LRDLL-LHDQC--------------QITTLRLSNNPLTA 169

Query: 351 E-VHEFFDGFSGRPNNLEYLDLSSNSLEGE----LPKSLGNLKNLQYLRLSGNSF----W 401
             V    +G +G   ++ +L L    L  E    L   L   + LQ L ++ N       
Sbjct: 170 AGVAVLMEGLAG-NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228

Query: 402 GSIPSSIGNLSSLRKLDLSYNGM 424
            ++  +     SL  L L +N +
Sbjct: 229 LALARAAREHPSLELLHLYFNEL 251

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 23/136 (16%), Positives = 47/136 (34%), Gaps = 30/136 (22%)

Query: 313 LEVLDLSNNLDLGGQ----LPKLFGILRRLKSLDLSANNLNGE-VHEFFDGFSGRPNN-L 366
           LE ++L+N +++         +       +K   +     N        +    + NN L
Sbjct: 38  LEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML--KVNNTL 95

Query: 367 EYLDLSSNSLEGE----LPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNL----------- 411
           + L++ SN + G     L ++L +  +L  LR+   S        +GN            
Sbjct: 96  KSLNVESNFISGSGILALVEALQSNTSLIELRIDNQS------QPLGNNVEMEIANMLEK 149

Query: 412 -SSLRKLDLSYNGMNG 426
            ++L K    +     
Sbjct: 150 NTTLLKFGYHFTQQGP 165

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	906
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-24
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-21
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-17
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-15
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-10
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	5e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	8e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	7e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score =  102 bits (254), Expect = 8e-24
 Identities = 74/376 (19%), Positives = 129/376 (34%), Gaps = 37/376 (9%)

Query: 364 NNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNG 423
           + +  L      ++      +  L NL  +  S N      P  + NL+ L  + ++ N 
Sbjct: 44  DQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ 99

Query: 424 MNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYN 483
           +    P +       +     Q +    L+    +N   L S  ++       + ++   
Sbjct: 100 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 159

Query: 484 WVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYL 543
                      + N        +     ++                        + +  L
Sbjct: 160 SFGNQVTDLKPLANLTTLERLDISSNKVSD-----------------ISVLAKLTNLESL 202

Query: 544 ILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWS-TNADELFLQDNRFSGPLPENI 602
           I +NNQI    P      NL  + L+ N  +    L S TN  +L L +N+ S   P   
Sbjct: 203 IATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPL-- 259

Query: 603 GSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDI 662
            S + +L  L L  NQ+S   P  +  L  L  L +  N+   E  +   + +    + +
Sbjct: 260 -SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ--LEDISPISNLKNLTYLTL 314

Query: 663 SNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLW 722
             N+++   P    SL  L  L  +NN +S     SL N T +  +  G NQ+S   PL 
Sbjct: 315 YFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPL- 369

Query: 723 ISENLSSFFMLRLRSN 738
              NL+    L L   
Sbjct: 370 --ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 87.7 bits (216), Expect = 6e-19
 Identities = 74/378 (19%), Positives = 131/378 (34%), Gaps = 48/378 (12%)

Query: 512 TELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSN 571
            E    +L    ++DT+      ++    T L      IK  +       NL  I+ S+N
Sbjct: 22  AEKMKTVLGKTNVTDTVSQTDLDQV----TTLQADRLGIK-SIDGVEYLNNLTQINFSNN 76

Query: 572 HFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLE 631
                 PL +       L D   +     +I  L        L+           + NL 
Sbjct: 77  QLTDITPLKNLT----KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 632 DLQILSIRSNKLSGEFPNCWYH-----------------SQMFWGIDISNNSLTGSIPSS 674
           +L  L + SN +S                          + +     +  +S   S  S 
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192

Query: 675 FGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLR 734
              L +L  L+ +NN +S   P      T L  + L GNQL     L    +L++   L 
Sbjct: 193 LAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQLKDIGTLA---SLTNLTDLD 247

Query: 735 LRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRV 794
           L +N +S   P  L  L  L  + L  N  S   P                    L    
Sbjct: 248 LANNQISNLAP--LSGLTKLTELKLGANQISNISPLA-----------GLTALTNLELNE 294

Query: 795 VKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSL 854
            +  +    + + ++  + L +NN++   P  + +L+ L  L  ++N++S     SL++L
Sbjct: 295 NQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANL 350

Query: 855 ASLSKLNLSFNNLAGKIP 872
            +++ L+   N ++   P
Sbjct: 351 TNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 86.2 bits (212), Expect = 2e-18
 Identities = 66/362 (18%), Positives = 115/362 (31%), Gaps = 61/362 (16%)

Query: 125 LLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLD 184
           L  +  L    L +   +G         L NL  +N S +  +   P  L +L+ L  + 
Sbjct: 43  LDQVTTLQADRLGIKSIDG------VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDIL 94

Query: 185 LYADSFSSNSGSLALHAQNLN------------------------WLSGLSSLKLLNLGF 220
           +  +  +  +    L                                + +S +  L+   
Sbjct: 95  MNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT 154

Query: 221 VKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIP 280
                   + +  +  L +L  L         +         T++  L  + N  +   P
Sbjct: 155 SLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 214

Query: 281 PWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKS 340
             +   T+L +L L  N          A+L  L  LDL+NN  +    P     L +L  
Sbjct: 215 LGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANN-QISNLAP--LSGLTKLTE 267

Query: 341 LDLSANNLNG----------------EVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSL 384
           L L AN ++                 E             NL YL L  N++    P  +
Sbjct: 268 LKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--V 325

Query: 385 GNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLL 444
            +L  LQ L  + N    S  SS+ NL+++  L   +N ++   P     L+ +    L 
Sbjct: 326 SSLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 381

Query: 445 QN 446
             
Sbjct: 382 DQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 0.001
 Identities = 35/157 (22%), Positives = 52/157 (33%), Gaps = 43/157 (27%)

Query: 117 LGGKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGS 176
           LG     ++  L  L  L     +    E       LKNL YL L F++ S   P  + S
Sbjct: 270 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSS 327

Query: 177 LSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNM 236
           L+ LQ L                     N +S +SSL                       
Sbjct: 328 LTKLQRLFFAN-----------------NKVSDVSSLA---------------------N 349

Query: 237 LPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSEN 273
           L ++  L   + Q+  +    P  N T I+ L L++ 
Sbjct: 350 LTNINWLSAGHNQISDLT---PLANLTRITQLGLNDQ 383

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 92.5 bits (228), Expect = 7e-21
 Identities = 72/298 (24%), Positives = 111/298 (37%), Gaps = 34/298 (11%)

Query: 601 NIGSLMPRLQRLYLSWNQLSGR--IPSSVCNLEDLQILSIRSN-KLSGEFPNCWYHSQMF 657
           +  +   R+  L LS   L     IPSS+ NL  L  L I     L G  P         
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 658 WGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSG 717
             + I++ +++G+IP     +++L  L  S N LSG +P S+ +   L  I   GN++SG
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 718 SLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSA 777
           ++P         F  + +  N L+G IP    NL    +    +     A      + + 
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 778 LVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILN 837
                        + +V   +N            +DL  N + G +P  +  L  LH LN
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNG---------LDLRNNRIYGTLPQGLTQLKFLHSLN 274

Query: 838 LSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSLPNFNDPSIYEGNPLLCGAPLP 895
           +S N L G IP    +L        +                      N  LCG+PLP
Sbjct: 275 VSFNNLCGEIP-QGGNLQRFDVSAYA---------------------NNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 88.7 bits (218), Expect = 1e-19
 Identities = 71/313 (22%), Positives = 118/313 (37%), Gaps = 29/313 (9%)

Query: 44  LCLDAEREGLLAFKESLTDPSGRLSSWV-GQDCC--KWNGVYCNN--QSGHVTQLNLRNP 98
           LC   +++ LL  K+ L +P+  LSSW+   DCC   W GV C+   Q+  V  L+L   
Sbjct: 2   LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60

Query: 99  Y----QLINGGVGDSTAYKGSCLGG------KINPSLLHLKYLDTLDLSLNDFEGAEIPE 148
                  I   + +        +GG       I P++  L  L  L ++  +  GA    
Sbjct: 61  NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120

Query: 149 YFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLS 208
                K L  L+ S+++ SG +PP + SL +L  +    +  S            L    
Sbjct: 121 LSQI-KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179

Query: 209 GLSSLKLLNLGFVKLDHVGADWL----------QAVNMLPSLVELRLHYCQLQGIPLSLP 258
            +S  +L         ++   ++           +V         ++H  +         
Sbjct: 180 TISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239

Query: 259 FINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDL 318
                +++ LDL  N     +P  L  L  L  L + +N   G IP +  NL+  +V   
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAY 298

Query: 319 SNNLDL-GGQLPK 330
           +NN  L G  LP 
Sbjct: 299 ANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 72.1 bits (175), Expect = 4e-14
 Identities = 53/309 (17%), Positives = 90/309 (29%), Gaps = 32/309 (10%)

Query: 397 GNSFWGSIPSSIGNLSSLRKLDLSYNGMNG--TIPESFGKLSELVDANLLQNSWEGILQE 454
             ++ G +  +      +  LDLS   +     IP S   L  L    +   +       
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 455 SQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTEL 514
                L +L    +T       +            L ++      +  + P  +     L
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIP---DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151

Query: 515 TSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFE 574
             +      IS  IP  + S      +  I  N       P   N          +    
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG 211

Query: 575 GTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQ 634
               L+ ++ +   +   + S         L   L  L L  N++ G +P  +  L+ L 
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271

Query: 635 ILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGG 694
            L                        ++S N+L G IP   G+L+   V   +NN    G
Sbjct: 272 SL------------------------NVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCG 306

Query: 695 IPCSLQNCT 703
            P  L  CT
Sbjct: 307 SP--LPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 68.2 bits (165), Expect = 7e-13
 Identities = 59/292 (20%), Positives = 103/292 (35%), Gaps = 32/292 (10%)

Query: 360 SGRPNNLEYLDLSSNSLEG--ELPKSLGNLKNLQYLRLSGN-SFWGSIPSSIGNLSSLRK 416
             +   +  LDLS  +L     +P SL NL  L +L + G  +  G IP +I  L+ L  
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 417 LDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKF 476
           L +++  ++G IP+   ++  LV  +   N+                             
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL---------------------------S 138

Query: 477 VFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKL 536
                     P  +      N   G     +       TS+ +    ++  IP  + +  
Sbjct: 139 GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198

Query: 537 SSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSG 596
            + +             L     +     +  +S  F+      S N + L L++NR  G
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG 258

Query: 597 PLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFP 648
            LP+ +  L   L  L +S+N L G IP    NL+   + +  +NK     P
Sbjct: 259 TLPQGLTQL-KFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.4 bits (155), Expect = 1e-11
 Identities = 59/274 (21%), Positives = 88/274 (32%), Gaps = 21/274 (7%)

Query: 151 GQLKNLRYLNLSFSSFSG--EIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLS 208
            Q   +  L+LS  +      IP  L +L  L +L +         G   L       ++
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI--------GGINNLVGPIPPAIA 98

Query: 209 GLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVL 268
            L+ L  L +    +     D+L  +  L +L                    +  ++  +
Sbjct: 99  KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL----PPSISSLPNLVGI 154

Query: 269 DLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQL 328
               N  + AIP    S + L                       L  +DLS N+  G   
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDAS 214

Query: 329 PKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLK 388
                     K       +L      F  G  G   NL  LDL +N + G LP+ L  LK
Sbjct: 215 VLFGSDKNTQK------IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

Query: 389 NLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYN 422
            L  L +S N+  G IP   GNL        + N
Sbjct: 269 FLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.5 bits (132), Expect = 1e-08
 Identities = 54/269 (20%), Positives = 100/269 (37%), Gaps = 13/269 (4%)

Query: 313 LEVLDLS-NNLDLGGQLPKLFGILRRLKSLDLSAN-NLNGEVHEFFDGFSGRPNNLEYLD 370
           +  LDLS  NL     +P     L  L  L +    NL G +       +     L YL 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT----QLHYLY 107

Query: 371 LSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPE 430
           ++  ++ G +P  L  +K L  L  S N+  G++P SI +L +L  +    N ++G IP+
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 431 SFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRL 490
           S+G       + L  +      + +  +            + ++  +   +       + 
Sbjct: 168 SYGS-----FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 491 KSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQI 550
                            + +   L  + LRN  I  T+P    ++L   +  L +S N +
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP-QGLTQLKF-LHSLNVSFNNL 280

Query: 551 KGKLPRQMNSPNLRSIDLSSNHFEGTLPL 579
            G++P+  N         ++N      PL
Sbjct: 281 CGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 54.4 bits (129), Expect = 2e-08
 Identities = 51/257 (19%), Positives = 92/257 (35%), Gaps = 23/257 (8%)

Query: 210 LSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLD 269
           +++L L  L   K   + +        LP L  L +        P+       T +  L 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLAN----LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 270 LSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLP 329
           ++  + + AIP +L  + +L  L   +N  +G +P   ++L  L  +    N   G    
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 330 KLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNL------------------EYLDL 371
                 +   S+ +S N L G++   F   +    +L                       
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 372 SSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPES 431
            + +        +G  KNL  L L  N  +G++P  +  L  L  L++S+N + G IP+ 
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ- 286

Query: 432 FGKLSELVDANLLQNSW 448
            G L     +    N  
Sbjct: 287 GGNLQRFDVSAYANNKC 303

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.4 bits (215), Expect = 3e-19
 Identities = 59/311 (18%), Positives = 108/311 (34%), Gaps = 26/311 (8%)

Query: 562 NLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSG 621
           +LR +  S    E        +   L LQ+N+ +     +  +L   L  L L  N++S 
Sbjct: 11  HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNL-KNLHTLILINNKISK 69

Query: 622 RIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSL 681
             P +   L  L+ L +  N+L           Q      +  N +T    S F  L  +
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR---VHENEITKVRKSVFNGLNQM 126

Query: 682 SVLLLSNNNL--SGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNL 739
            V+ L  N L  SG    + Q    L+ I +    ++ ++P  +  +L+    L L  N 
Sbjct: 127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTE---LHLDGNK 182

Query: 740 LSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRN 799
           ++      L  L NL  + LS N+ S      + N   L   + +             + 
Sbjct: 183 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--------KV 234

Query: 800 PEYSNIIADVNSIDLSWNNLTG------QIPDEIGNLSALHILNLSHNQLS--GAIPQSL 851
           P        +  + L  NN++         P      ++   ++L  N +      P + 
Sbjct: 235 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 294

Query: 852 SSLASLSKLNL 862
             +   + + L
Sbjct: 295 RCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.1 bits (196), Expect = 9e-17
 Identities = 56/298 (18%), Positives = 91/298 (30%), Gaps = 34/298 (11%)

Query: 131 LDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSF 190
              LDL  N          F  LKNL  L L  +  S   P     L  L+ L L  +  
Sbjct: 33  TALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 191 SSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQL 250
                 +    Q L                   + +        N L  ++ + L    L
Sbjct: 92  KELPEKMPKTLQELRVHE---------------NEITKVRKSVFNGLNQMIVVELGTNPL 136

Query: 251 QGIP-LSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFAN 309
           +     +  F     +S + +++ +  + IP  L    SLT+L+L  N  T         
Sbjct: 137 KSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLPP--SLTELHLDGNKITKVDAASLKG 193

Query: 310 LKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYL 369
           L  L  L LS N  +             L+ L L+ N L        D        ++ +
Sbjct: 194 LNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD-----HKYIQVV 247

Query: 370 DLSSNSLEG------ELPKSLGNLKNLQYLRLSGN--SFWGSIPSSIGNLSSLRKLDL 419
            L +N++          P       +   + L  N   +W   PS+   +     + L
Sbjct: 248 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.0 bits (175), Expect = 4e-14
 Identities = 52/222 (23%), Positives = 83/222 (37%), Gaps = 15/222 (6%)

Query: 239 SLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNF 298
            L  ++     L+ +P  LP       ++LDL  N           +L +L  L L  N 
Sbjct: 11  HLRVVQCSDLGLEKVPKDLP----PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 66

Query: 299 FTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLF-GILRRLKSLDLSANNLNGEVHEFFD 357
            +   P  FA L  LE L LS N     QL +L   + + L+ L +  N +       F+
Sbjct: 67  ISKISPGAFAPLVKLERLYLSKN-----QLKELPEKMPKTLQELRVHENEITKVRKSVFN 121

Query: 358 GFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKL 417
           G +     +  L  +     G    +   +K L Y+R++  +   +IP  +    SL +L
Sbjct: 122 GLN--QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTEL 176

Query: 418 DLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMN 459
            L  N +      S   L+ L    L  NS   +   S    
Sbjct: 177 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 218

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.5 bits (171), Expect = 1e-13
 Identities = 55/293 (18%), Positives = 83/293 (28%), Gaps = 42/293 (14%)

Query: 360 SGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDL 419
              P +   LDL +N +         NLKNL  L L  N      P +   L  L +L L
Sbjct: 27  KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 420 SYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFN 479
           S N +     +    L EL                                      V  
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITK-----------------------------VRK 117

Query: 480 VSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSE 539
             +N +    +  +     +         Q   +L+ + + +  I+ TIP      L   
Sbjct: 118 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSL--- 173

Query: 540 ITYLILSNNQIKGKLPRQ-MNSPNLRSIDLSSNHFEGTLPLWSTNADELF-LQDNRFSGP 597
            T L L  N+I            NL  + LS N           N   L  L  N     
Sbjct: 174 -TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 232

Query: 598 LPENIGSLMPRLQRLYLSWNQLSGRIPSSVC------NLEDLQILSIRSNKLS 644
                 +    +Q +YL  N +S    +  C             +S+ SN + 
Sbjct: 233 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.1 bits (165), Expect = 7e-13
 Identities = 41/256 (16%), Positives = 86/256 (33%), Gaps = 23/256 (8%)

Query: 632 DLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNL 691
           D  +L +++NK++      + + +    + + NN ++   P +F  L  L  L LS N L
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 692 SGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNL 751
                   +    L   +    ++  S+   +  N      L       SG        +
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGL--NQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 752 QNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNS------EVFQQLIWRVV--------KG 797
           + L  I ++  N +        +L+ L    N          + L               
Sbjct: 150 KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209

Query: 798 RNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSG------AIPQSL 851
            +         +  + L+ N L  ++P  + +   + ++ L +N +S         P   
Sbjct: 210 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 268

Query: 852 SSLASLSKLNLSFNNL 867
           +  AS S ++L  N +
Sbjct: 269 TKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.5 bits (114), Expect = 2e-06
 Identities = 23/88 (26%), Positives = 36/88 (40%)

Query: 803 SNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNL 862
            ++  D   +DL  N +T     +  NL  LH L L +N++S   P + + L  L +L L
Sbjct: 27  KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 863 SFNNLAGKIPSLPNFNDPSIYEGNPLLC 890
           S N L      +P          N +  
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITK 114

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.2 bits (196), Expect = 5e-17
 Identities = 53/273 (19%), Positives = 93/273 (34%), Gaps = 16/273 (5%)

Query: 598 LPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMF 657
           +P  I       QR++L  N++S    +S     +L IL + SN L+      +    + 
Sbjct: 26  VPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 658 WGIDISNNSLTGSI-PSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLS 716
             +D+S+N+   S+ P++F  L  L  L L    L    P   +    L  + L  N L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 717 GSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLS 776
                    +L +   L L  N +S    +    L +L  + L  N  +   P    +L 
Sbjct: 143 ALPDDTF-RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 777 ALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHIL 836
            L+           +                    + L+ N             + L   
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQ-------YLRLNDNPWVC-DCRARPLWAWLQKF 253

Query: 837 NLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAG 869
             S +++  ++P     LA      L+ N+L G
Sbjct: 254 RGSSSEVPCSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (157), Expect = 5e-12
 Identities = 55/262 (20%), Positives = 87/262 (33%), Gaps = 28/262 (10%)

Query: 154 KNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLA--------------- 198
              + + L  +  S        +  +L  L L+++  +    +                 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 199 -LHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSL 257
            L + +     GL  L  L+L    L  +G         L +L  L L    LQ +P   
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL---FRGLAALQYLYLQDNALQALPDDT 148

Query: 258 PFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLD 317
            F +  +++ L L  N  +S        L SL +L L  N      P+ F +L  L  L 
Sbjct: 149 -FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 318 LSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLE 377
           L  N         L  + R L+ L L+ N    +              L+    SS+ + 
Sbjct: 208 LFANNLSALPTEALAPL-RALQYLRLNDNPWVCDCR-----ARPLWAWLQKFRGSSSEVP 261

Query: 378 GELPKSLGN--LKNLQYLRLSG 397
             LP+ L    LK L    L G
Sbjct: 262 CSLPQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (155), Expect = 9e-12
 Identities = 43/260 (16%), Positives = 73/260 (28%), Gaps = 35/260 (13%)

Query: 536 LSSEITYLILSNNQIKGKLPRQM-NSPNLR---SIDLSSNHFEGTLPLWSTNADELFLQD 591
           + +    + L  N+I            NL             +          ++L L D
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 592 NRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCW 651
           N     +       + RL  L+L    L    P     L  LQ L ++ N L     + +
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 652 YHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSL------------ 699
                   + +  N ++     +F  L SL  LLL  N ++   P +             
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 700 ------------QNCTGLTSIDLGGNQLSGSLPL-WISENLSSFFMLRLRSNLLSGDIPQ 746
                            L  + L  N          +   L      R  S+ +   +PQ
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQK---FRGSSSEVPCSLPQ 266

Query: 747 RLCNLQNLHIIDLSHNNFSG 766
               L    +  L+ N+  G
Sbjct: 267 ---RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 2e-10
 Identities = 48/280 (17%), Positives = 90/280 (32%), Gaps = 15/280 (5%)

Query: 369 LDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTI 428
                  L+  +P  +      Q + L GN       +S     +L  L L  N +    
Sbjct: 16  TSCPQQGLQ-AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 429 PESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPF 488
             +F  L+ L   +L  N+    +  + F  L RL +  L     ++    +        
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL---A 129

Query: 489 RLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNN 548
            L+ + +++  +        +    LT + L    I  ++P   F  L S    L+  N 
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNR 188

Query: 549 QIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNAD---ELFLQDNRFSGPLPENIGSL 605
                     +   L ++ L +N+                 L L DN +          L
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC--RARPL 246

Query: 606 MPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSG 645
              LQ+   S +++   +P     L    +  + +N L G
Sbjct: 247 WAWLQKFRGSSSEVPCSLPQ---RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 5e-10
 Identities = 58/250 (23%), Positives = 83/250 (33%), Gaps = 26/250 (10%)

Query: 241 VELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFT 300
           V        LQ +P+ +P     +   + L  N  +        +  +LT L+L  N   
Sbjct: 14  VTTSCPQQGLQAVPVGIP----AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA 69

Query: 301 GHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFF---- 356
                 F  L LLE LDLS+N  L    P  F  L RL +L L    L       F    
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129

Query: 357 ----------------DGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSF 400
                           D       NL +L L  N +     ++   L +L  L L  N  
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 401 WGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNL 460
               P +  +L  L  L L  N ++    E+   L  L    L  N W    +       
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL--W 247

Query: 461 KRLESFRLTT 470
             L+ FR ++
Sbjct: 248 AWLQKFRGSS 257

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 8e-09
 Identities = 46/239 (19%), Positives = 79/239 (33%), Gaps = 34/239 (14%)

Query: 660 IDISNNSLTGSIPSSFGSLRSLSVLLLSNNN-------------------------LSGG 694
           I +  N ++    +SF + R+L++L L +N                          L   
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96

Query: 695 IPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNL 754
            P +      L ++ L        L   +   L++   L L+ N L         +L NL
Sbjct: 97  DPATFHGLGRLHTLHL-DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 155

Query: 755 HIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDL 814
             + L  N  S    R    L +L           L    V   +P     +  + ++ L
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLL-------LHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 815 SWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPS 873
             NNL+    + +  L AL  L L+ N       ++    A L K   S + +   +P 
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRGSSSEVPCSLPQ 266

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 3e-07
 Identities = 46/259 (17%), Positives = 74/259 (28%), Gaps = 34/259 (13%)

Query: 648 PNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTS 707
             C  +++           L  ++P    +  +   + L  N +S     S + C  LT 
Sbjct: 4   GACVCYNEPKVTTSCPQQGLQ-AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTI 60

Query: 708 IDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGA 767
           + L  N L+       +       +    +  L    P     L  LH + L        
Sbjct: 61  LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120

Query: 768 IPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEI 827
            P     L+AL Y                               + L  N L     D  
Sbjct: 121 GPGLFRGLAALQY-------------------------------LYLQDNALQALPDDTF 149

Query: 828 GNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSLPNFNDPSIYEGNP 887
            +L  L  L L  N++S    ++   L SL +L L  N +A   P         +     
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 888 LLCGAPLPTKCPGKHSPLH 906
               + LPT+       L 
Sbjct: 210 ANNLSALPTEALAPLRALQ 228

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (185), Expect = 5e-15
 Identities = 58/462 (12%), Positives = 116/462 (25%), Gaps = 23/462 (4%)

Query: 313 LEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLS 372
           ++ LD+        +  +L  +L++ + + L    L     +           L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 373 SNSLEGELPKSLG-----NLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGT 427
           SN L       +          +Q L L      G+    + +           +  +  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 428 IPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPP 487
           + ++  +L      +      +  L+                     K  F         
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS---VLRAKPDFKELTVSNND 180

Query: 488 FRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSN 547
                +++    +  S      ++ E   V   N      I     S     +    L +
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240

Query: 548 NQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMP 607
             +    P  ++  +                           +  +        +G    
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300

Query: 608 RLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSL 667
           RL    L                      S  S+ L+                D     L
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360

Query: 668 TGSIPSSFGSLRSLSVLLLSNNNLSG----GIPCSLQNCTGLTSIDLGGNQLSGSLPLWI 723
              +      LR L    L++ ++S      +  +L     L  +DL  N L  +  L +
Sbjct: 361 CQGLGQPGSVLRVLW---LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 417

Query: 724 SE----NLSSFFMLRLRSNLLSGDIPQRLCNLQ----NLHII 757
            E           L L     S ++  RL  L+    +L +I
Sbjct: 418 VESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (142), Expect = 9e-10
 Identities = 49/421 (11%), Positives = 103/421 (24%), Gaps = 15/421 (3%)

Query: 365 NLEYLDLSSNSL-EGELPKSLGNLKNLQYLRLSGNSF----WGSIPSSIGNLSSLRKLDL 419
           +++ LD+    L +    + L  L+  Q +RL            I S++    +L +L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 420 SYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFN 479
             N +         +  +     + + S    LQ                         +
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLS----LQNCCLTGAGCGVLSSTLRTLPTLQELH 118

Query: 480 VSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSE 539
           +S N +    L+ +                    L++     +        D+     S 
Sbjct: 119 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 178

Query: 540 ITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLP 599
                     +   L           ++      +    L    A +  L++        
Sbjct: 179 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 238

Query: 600 ENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWG 659
            ++G        L+ S    +  I       +    L                 +++   
Sbjct: 239 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 298

Query: 660 IDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSL 719
                            SL   S    +          +         I     + +G  
Sbjct: 299 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 358

Query: 720 PLWIS--ENLSSFFMLRLRSNLLSGD----IPQRLCNLQNLHIIDLSHNNFSGAIPRCIG 773
            L     +  S   +L L    +S      +   L    +L  +DLS+N    A    + 
Sbjct: 359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418

Query: 774 N 774
            
Sbjct: 419 E 419

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 8e-06
 Identities = 20/98 (20%), Positives = 30/98 (30%), Gaps = 6/98 (6%)

Query: 296 WNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQ----LPKLFGILRRLKSLDLSANNLNGE 351
                           +L VL L++  D+       L         L+ LDLS N L   
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 412

Query: 352 -VHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLK 388
            + +  +        LE L L       E+   L  L+
Sbjct: 413 GILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 2e-05
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 808 DVNSIDLSWNNLT-GQIPDEIGNLSALHILNLSHNQLSG----AIPQSLSSLASLSKLNL 862
           D+ S+D+    L+  +  + +  L    ++ L    L+      I  +L    +L++LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 863 SFNNLAGKIPS 873
             N L      
Sbjct: 63  RSNELGDVGVH 73

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 1e-04
 Identities = 16/123 (13%), Positives = 33/123 (26%), Gaps = 5/123 (4%)

Query: 131 LDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGE----IPPQLGSLSSLQYLDLY 186
           + +LD+   +   A   E    L+  + + L     +      I   L    +L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 187 ADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLH 246
           ++    + G   +          +  L L N                       + L  +
Sbjct: 64  SNEL-GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 247 YCQ 249
              
Sbjct: 123 LLG 125

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 1e-04
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 4/75 (5%)

Query: 705 LTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGD----IPQRLCNLQNLHIIDLS 760
           + S+D+   +LS +    +   L    ++RL    L+      I   L     L  ++L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 761 HNNFSGAIPRCIGNL 775
            N        C+   
Sbjct: 64  SNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 2e-04
 Identities = 17/106 (16%), Positives = 30/106 (28%), Gaps = 7/106 (6%)

Query: 560 SPNLRSIDLSSNHF--EGTLPLWS--TNADELFLQDNRFSGPLPENIGSLM---PRLQRL 612
           S +++S+D+            L         + L D   +    ++I S +   P L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 613 YLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFW 658
            L  N+L       V          I+   L            +  
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 106

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 4e-04
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 9/94 (9%)

Query: 258 PFINFTSISVLDLSENSFN----SAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFA----- 308
                + + VL L++   +    S++   L +  SL +L L  N        +       
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 309 NLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLD 342
              LLE L L +         +L  + +   SL 
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 6e-04
 Identities = 46/407 (11%), Positives = 104/407 (25%), Gaps = 30/407 (7%)

Query: 490 LKSIQIENCQVGPS-FPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSS--EITYLILS 546
           ++S+ I+  ++  + +   L +  +   V L + G+++    D  S L     +  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 547 NNQIKGKLPR------QMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPE 600
           +N++            Q  S  ++ + L +    G      ++     L   +       
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR-TLPTLQELHLSDN 122

Query: 601 NIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGI 660
            +G    +L    L   Q                     ++ L  +              
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 661 DISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCS----------------LQNCTG 704
           +     L   +  S   L +L +      + +    C                      G
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 705 LTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNF 764
           +  +  G    S  L                    +              + +       
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 765 SGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIP 824
                   G     ++  +                     +   +++  L    +     
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 825 DEIGNLSALHILNLSHNQLSG----AIPQSLSSLASLSKLNLSFNNL 867
                 S L +L L+   +S     ++  +L +  SL +L+LS N L
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 409

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 0.001
 Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 9/74 (12%)

Query: 810 NSIDLSWNNLTGQ----IPDEIGNLSALHILNLSHNQLSGAIPQSLSS-----LASLSKL 860
             + L+  +++      +   +    +L  L+LS+N L  A    L          L +L
Sbjct: 372 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 431

Query: 861 NLSFNNLAGKIPSL 874
            L     + ++   
Sbjct: 432 VLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 14/92 (15%), Positives = 25/92 (27%), Gaps = 9/92 (9%)

Query: 239 SLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFN----SAIPPWLFSLTSLTKLYL 294
            +  L +   +L     +          V+ L +          I   L    +L +L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 295 RWNFFTGHIPNEFA-----NLKLLEVLDLSNN 321
           R N       +            ++ L L N 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.2 bits (152), Expect = 2e-11
 Identities = 35/208 (16%), Positives = 60/208 (28%), Gaps = 15/208 (7%)

Query: 660 IDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSL 719
           ++    +LT ++P      +  ++L LS N L      +L   T LT ++L   +L+   
Sbjct: 15  VNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ 71

Query: 720 PLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALV 779
                  L +  +   +   L                 +   +   GA+          +
Sbjct: 72  VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131

Query: 780 YGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLS 839
            GN  +     +                       + NNLT      +  L  L  L L 
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSL-----------ANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 840 HNQLSGAIPQSLSSLASLSKLNLSFNNL 867
            N L   IP+       L    L  N  
Sbjct: 181 ENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 4e-09
 Identities = 44/202 (21%), Positives = 63/202 (31%), Gaps = 21/202 (10%)

Query: 237 LPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLR- 295
           + S +E+      L  +P  LP       ++L LSEN   +     L   T LT+L L  
Sbjct: 9   VASHLEVNCDKRNLTALPPDLP----KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 296 ---------------WNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKS 340
                                H   +   L    +  L+       +L  L     R   
Sbjct: 65  AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 341 LDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSF 400
                     E+     G       LE L L++N+L       L  L+NL  L L  NS 
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

Query: 401 WGSIPSSIGNLSSLRKLDLSYN 422
           + +IP        L    L  N
Sbjct: 185 Y-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 1e-08
 Identities = 41/204 (20%), Positives = 61/204 (29%), Gaps = 20/204 (9%)

Query: 261 NFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSN 320
              S   ++  + +  + +PP L      T L+L  N               L  L+L  
Sbjct: 8   KVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 321 NLDLGGQLPKLFGILRRLKSLDLSANNLNGEVH----------------EFFDGFSGRPN 364
                 Q+     +L  L        +L                         G      
Sbjct: 65  AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 365 NLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGM 424
            L+ L L  N L+   P  L     L+ L L+ N+        +  L +L  L L  N +
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

Query: 425 NGTIPESFGKLSELVDANLLQNSW 448
             TIP+ F     L  A L  N W
Sbjct: 185 Y-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (127), Expect = 3e-08
 Identities = 37/205 (18%), Positives = 52/205 (25%), Gaps = 20/205 (9%)

Query: 145 EIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNL 204
            +P      K+   L+LS +         L   + L  L+L                   
Sbjct: 24  ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL----------------DRA 65

Query: 205 NWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTS 264
                     L  LG + L H     L  +      + +                     
Sbjct: 66  ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125

Query: 265 ISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDL 324
           +  L L  N   +  P  L     L KL L  N  T         L+ L+ L L  N   
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185

Query: 325 GGQLPKLFGILRRLKSLDLSANNLN 349
              +PK F     L    L  N   
Sbjct: 186 --TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 4e-08
 Identities = 27/209 (12%), Positives = 58/209 (27%), Gaps = 12/209 (5%)

Query: 365 NLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGM 424
           +   ++    +L   LP  L   K+   L LS N  +    +++   + L +L+L    +
Sbjct: 11  SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 425 NGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNW 484
                +    +        L        Q      L +        + +   + ++    
Sbjct: 68  TKLQVDGTLPV--------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 485 VPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLI 544
           +                 + P  L   T     +         +P    + L + +  L+
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN-LDTLL 178

Query: 545 LSNNQIKGKLPRQMNSPNLRSIDLSSNHF 573
           L  N +         S  L    L  N +
Sbjct: 179 LQENSLYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 1e-06
 Identities = 39/206 (18%), Positives = 62/206 (30%), Gaps = 6/206 (2%)

Query: 559 NSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQ 618
              +   ++    +     P    +   L L +N         +     RL +L L   +
Sbjct: 8   KVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRAE 66

Query: 619 LSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSL 678
           L+         +     LS    +     P           +D+S N LT     +   L
Sbjct: 67  LTKLQVDGTLPVLGTLDLSHNQLQ---SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 679 RSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSN 738
             L  L L  N L    P  L     L  + L  N L+      ++  L +   L L+ N
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN-GLENLDTLLLQEN 182

Query: 739 LLSGDIPQRLCNLQNLHIIDLSHNNF 764
            L   IP+       L    L  N +
Sbjct: 183 SLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 4e-04
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 811 SIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNN 866
            ++    NLT  +P ++       IL+LS N L      +L     L++LNL    
Sbjct: 14  EVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 8e-04
 Identities = 30/182 (16%), Positives = 49/182 (26%), Gaps = 18/182 (9%)

Query: 235 NMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYL 294
           ++      L L    L    L+   + +T ++ L+L               +     L  
Sbjct: 28  DLPKDTTILHLSENLLYTFSLAT-LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSH 86

Query: 295 RWNFFTGHIP----------------NEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRL 338
                   +                        L  + +L      G +L  L   L   
Sbjct: 87  NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 339 KSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGN 398
                  +  N  + E   G      NL+ L L  NSL   +PK       L +  L GN
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

Query: 399 SF 400
            +
Sbjct: 206 PW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 35/227 (15%), Positives = 61/227 (26%), Gaps = 25/227 (11%)

Query: 150 FGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSG 209
             ++ +   +N    + +  +PP L        L L     S N     L+  +L  L  
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHL-----SENL----LYTFSLATLMP 53

Query: 210 LSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLD 269
            + L  LNL   +L  +  D         +L  L         +              + 
Sbjct: 54  YTRLTQLNLDRAELTKLQVDG--------TLPVLGTLDLSHNQLQSLPLLGQTLPALTVL 105

Query: 270 LSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLP 329
               +  +++P          +           +P                N +L     
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165

Query: 330 KLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSL 376
            L   L  L +L L  N+L      FF       + L +  L  N  
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFFG-----SHLLPFAFLHGNPW 207

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 57.9 bits (138), Expect = 4e-10
 Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 9/168 (5%)

Query: 598 LPENIGSLMPRLQRLYLSWNQLSGRIPSSVC-NLEDLQILSIRSNKLSGEFPNCWYHSQM 656
           +P +I         L L+ N+L       +   L  L  L ++ N+L+G  PN +  +  
Sbjct: 23  IPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 657 FWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLS 716
              + +  N +       F  L  L  L L +N +S  +P S ++   LTS++L  N  +
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 717 GSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNF 764
            +  L             L         P     ++++ I DL H+ F
Sbjct: 140 CNCHLAW--FAEWLRKKSLNGGAARCGAPS---KVRDVQIKDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 36/194 (18%), Positives = 73/194 (37%), Gaps = 17/194 (8%)

Query: 515 TSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQM--NSPNLRSIDLSSNH 572
           T+V     G+   IP D    +    T L+L++N++       +    P+L  ++L  N 
Sbjct: 11  TTVDCTGRGLK-EIPRD----IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ 65

Query: 573 F--EGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNL 630
                       +  +           +   +   + +L+ L L  NQ+S  +P S  +L
Sbjct: 66  LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125

Query: 631 EDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNN 690
             L  L++ SN  +      W+ ++      ++  +     PS    +R + +  L ++ 
Sbjct: 126 NSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPS---KVRDVQIKDLPHSE 181

Query: 691 LSGGIPCSLQNCTG 704
                 CS +N  G
Sbjct: 182 FK----CSSENSEG 191

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.9 bits (99), Expect = 5e-05
 Identities = 34/195 (17%), Positives = 62/195 (31%), Gaps = 12/195 (6%)

Query: 239 SLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNF 298
               +      L+ IP  +P       + L L++N         LF              
Sbjct: 9   EGTTVDCTGRGLKEIPRDIP----LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN 64

Query: 299 FTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDG 358
               I                    +     K+F  L +LK+L+L  N ++  +   F+ 
Sbjct: 65  QLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124

Query: 359 FSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLD 418
                N+L  L+L+SN             + L+   L+G +     PS    +  ++  D
Sbjct: 125 L----NSLTSLNLASNPFNCNCH-LAWFAEWLRKKSLNGGAARCGAPSK---VRDVQIKD 176

Query: 419 LSYNGMNGTIPESFG 433
           L ++    +   S G
Sbjct: 177 LPHSEFKCSSENSEG 191

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 31/191 (16%), Positives = 56/191 (29%), Gaps = 14/191 (7%)

Query: 660 IDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSL 719
           +D +   L   IP         + LLL++N L       L                   +
Sbjct: 13  VDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 69

Query: 720 PLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALV 779
                E  S    L+L  N +     +    L  L  ++L  N  S  +P    +L++L 
Sbjct: 70  EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129

Query: 780 YGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLS 839
             N                N   +     +    L+        P +   +  + I +L 
Sbjct: 130 SLNL--------ASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLP 178

Query: 840 HNQLSGAIPQS 850
           H++   +   S
Sbjct: 179 HSEFKCSSENS 189

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 56.8 bits (135), Expect = 5e-09
 Identities = 43/330 (13%), Positives = 83/330 (25%), Gaps = 22/330 (6%)

Query: 362 RPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSY 421
                  L+L++  L   LP+      +L+ L  S NS    +P    +L SL   + + 
Sbjct: 36  LDRQAHELELNNLGLS-SLPELPP---HLESLVASCNSL-TELPELPQSLKSLLVDNNNL 90

Query: 422 NGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVS 481
             ++   P              L         +   ++   L+         +      +
Sbjct: 91  KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 150

Query: 482 YNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEIT 541
                P       +       +    L         I+    I + +P        + I 
Sbjct: 151 QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIY 210

Query: 542 YLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPEN 601
                   +    P         +          +L     + +               N
Sbjct: 211 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 270

Query: 602 IGSL--------MPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYH 653
             S          P L+ L +S N+L   +P+    LE L        ++     N    
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLIASFNHLAEVPELPQNLKQ- 328

Query: 654 SQMFWGIDISNNSLTGSIPSSFGSLRSLSV 683
                 + +  N L    P    S+  L +
Sbjct: 329 ------LHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.0 bits (120), Expect = 3e-07
 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 14/99 (14%)

Query: 293 YLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEV 352
               N  +  I +       LE L++SNN     +L +L  +  RL+ L  S N+L    
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNN-----KLIELPALPPRLERLIASFNHLA--- 317

Query: 353 HEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQ 391
                     P NL+ L +  N L  E P    ++++L+
Sbjct: 318 -----EVPELPQNLKQLHVEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.0 bits (120), Expect = 3e-07
 Identities = 53/332 (15%), Positives = 101/332 (30%), Gaps = 29/332 (8%)

Query: 313 LEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLS 372
              L+L+N       L  L  +   L+SL  S N+L              P +L+ L + 
Sbjct: 40  AHELELNNL-----GLSSLPELPPHLESLVASCNSLT--------ELPELPQSLKSLLVD 86

Query: 373 SNSLEG--ELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPE 430
           +N+L+   +LP  L  L               S    I ++ +     L     +     
Sbjct: 87  NNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIA 146

Query: 431 SFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRL 490
           +     E +           I  ++  +         L +      +            L
Sbjct: 147 AGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFL 206

Query: 491 KSIQIENCQVGPSFPVWLQVQTELTSVI-------LRNVGISDTIPGDWFSKLSSEITYL 543
            +I  +N  +     +   ++              L        +  + FS LS     L
Sbjct: 207 TTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNL 266

Query: 544 ILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIG 603
              N             P+L  +++S+N     LP      + L    N  +      + 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLIASFNHLA-----EVP 320

Query: 604 SLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQI 635
            L   L++L++ +N L    P    ++EDL++
Sbjct: 321 ELPQNLKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.2 bits (118), Expect = 6e-07
 Identities = 52/327 (15%), Positives = 87/327 (26%), Gaps = 32/327 (9%)

Query: 129 KYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYAD 188
           +    L+L+        +PE      +L  L  S +S + E+P    SL SL   +    
Sbjct: 38  RQAHELELNNLGLS--SLPE---LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK 91

Query: 189 SFSSNSGSLALHAQNLNWL-------------SGLSSLKLLNLGFVKLDHVGADWLQAVN 235
           + S     L     + N L                     L         +         
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 236 MLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLR 295
           +        L +        +           L+      N                   
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 296 WNFFTGHIPNEFANLKLLEVLDLSNN----LDLGGQLPKLFGILRRLKSLDLSANNLNGE 351
            N     +P+   +L+ L V D        L        +   +    S           
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 352 VHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNL 411
                      P +LE L++S+N L  ELP        L+ L  S N     +P    N 
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHL-AEVPELPQN- 325

Query: 412 SSLRKLDLSYNGMNGTIPESFGKLSEL 438
             L++L + YN +    P+    + +L
Sbjct: 326 --LKQLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 7e-06
 Identities = 51/299 (17%), Positives = 86/299 (28%), Gaps = 14/299 (4%)

Query: 580 WSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIR 639
               A EL L +   S  LPE      P L+ L  S N L+  +P    +L+ L + +  
Sbjct: 36  LDRQAHELELNNLGLSS-LPELP----PHLESLVASCNSLT-ELPELPQSLKSLLVDNNN 89

Query: 640 SNKLSGEFPNCWYH--SQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPC 697
              LS   P   Y   S           + +        +     +  L  +        
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 698 SLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHII 757
           +                +                +  + +     +    L NL  L  I
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 758 DLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSI-DLSW 816
              +N             +  V  N      +L   +      E                
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269

Query: 817 NNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSLP 875
           N  + +I        +L  LN+S+N+L   +P   +    L +L  SFN+L  ++P LP
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELP---ALPPRLERLIASFNHL-AEVPELP 323

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 3e-05
 Identities = 53/340 (15%), Positives = 97/340 (28%), Gaps = 32/340 (9%)

Query: 536 LSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFS 595
           L  +   L L+N  +   LP     P+L S+  S N     LP    +   L + +N   
Sbjct: 36  LDRQAHELELNNLGLS-SLPELP--PHLESLVASCNSLT-ELPELPQSLKSLLVDNNNL- 90

Query: 596 GPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQ 655
               + +  L P L+ L +S NQL         +   +  +   S K   + P       
Sbjct: 91  ----KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIA 146

Query: 656 MFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQL 715
                      L      +     + S+  L +  LS     +  N             L
Sbjct: 147 AGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFL 206

Query: 716 SGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNL 775
           +                  L +  +  +    L  L           N    +       
Sbjct: 207 TTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP--- 263

Query: 776 SALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHI 835
                                       ++   +  +++S N L  ++P        L  
Sbjct: 264 -----------PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LER 308

Query: 836 LNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSLP 875
           L  S N L+  +P+      +L +L++ +N L  + P +P
Sbjct: 309 LIASFNHLA-EVPELPQ---NLKQLHVEYNPLR-EFPDIP 343

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 6e-05
 Identities = 49/345 (14%), Positives = 90/345 (26%), Gaps = 31/345 (8%)

Query: 412 SSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTE 471
               +L+L+  G++ ++PE    L  LV +         + Q  + + +       L+  
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL 96

Query: 472 PTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGD 531
           P       VS N +              +        ++     S+     G +      
Sbjct: 97  PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP 156

Query: 532 WFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQD 591
               L                       +      +      +  L L S  A    L++
Sbjct: 157 ELQNL--------------------PFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEE 196

Query: 592 NRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCW 651
                 LP              L     S    +   N         +S        N +
Sbjct: 197 LPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIF 256

Query: 652 YHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLG 711
                        N+ +  I S      SL  L +SNN L   +P        L  +   
Sbjct: 257 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIAS 312

Query: 712 GNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHI 756
            N L+      + E   +   L +  N L    P    ++++L +
Sbjct: 313 FNHLAE-----VPELPQNLKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 6e-05
 Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 17/104 (16%)

Query: 270 LSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLP 329
              N+ ++ I        SL +L +  N     +P     L   E L  S N      L 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFN-----HLA 317

Query: 330 KLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSS 373
           ++  + + LK L +  N L          F   P ++E L ++S
Sbjct: 318 EVPELPQNLKQLHVEYNPLR--------EFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 10/92 (10%)

Query: 224 DHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWL 283
           +    +     ++ PSL EL +   +L  +P   P      +  L  S N     +P   
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP-----RLERLIASFNHLAE-VPE-- 321

Query: 284 FSLTSLTKLYLRWNFFTGHIPNEFANLKLLEV 315
               +L +L++ +N      P+   +++ L +
Sbjct: 322 -LPQNLKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 49/359 (13%), Positives = 99/359 (27%), Gaps = 64/359 (17%)

Query: 514 LTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHF 573
              + L N+G+S ++P     +L   +  L+ S N +  +LP      +L+S+ + +N+ 
Sbjct: 40  AHELELNNLGLS-SLP-----ELPPHLESLVASCNSLT-ELPE--LPQSLKSLLVDNNNL 90

Query: 574 EGTLPLWS-----------TNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGR 622
           +    L                       +       +N            L +      
Sbjct: 91  KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 150

Query: 623 IPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLS 682
               +  L++L  L+      +           +   +  +N         +   L ++ 
Sbjct: 151 QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIY 210

Query: 683 VLLLSNNNLSGGIPCSLQNCTGLTS----IDLGGNQLSGSLPLWISENLSSFFMLRLRSN 738
                   L    P                +L  +     +   I   LS         N
Sbjct: 211 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 270

Query: 739 LLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGR 798
             S +I        +L  +++S+N     +P     L  L                    
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL-------------------- 309

Query: 799 NPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASL 857
                           S+N+L  ++P+   NL     L++ +N L    P    S+  L
Sbjct: 310 --------------IASFNHLA-EVPELPQNLK---QLHVEYNPLRE-FPDIPESVEDL 349

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 6e-09
 Identities = 41/276 (14%), Positives = 97/276 (35%), Gaps = 12/276 (4%)

Query: 339 KSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGN 398
           ++LDL+  NL+ +V             +       + ++  L +     + +Q++ LS +
Sbjct: 3   QTLDLTGKNLHPDVTGRL-----LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNS 56

Query: 399 SFWG-SIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQN-SWEGILQESQ 456
                ++   +   S L+ L L    ++  I  +  K S LV  NL     +     ++ 
Sbjct: 57  VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 116

Query: 457 FMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTS 516
             +  RL+   L+                    +  + +   +          +     +
Sbjct: 117 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 176

Query: 517 VILRNVGISDTIPGDWFSKLS--SEITYLILSN-NQIKGKLPRQM-NSPNLRSIDLSSNH 572
           ++  ++  S  +  D F +    + + +L LS    I  +   ++   P L+++ +    
Sbjct: 177 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIV 236

Query: 573 FEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPR 608
            +GTL L       L +  + F+      IG+   +
Sbjct: 237 PDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQ 272

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 6e-09
 Identities = 39/238 (16%), Positives = 67/238 (28%), Gaps = 10/238 (4%)

Query: 114 GSCLGGKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQ 173
            S +   +       + +  +DLS +  E + +     Q   L+ L+L     S  I   
Sbjct: 32  RSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT 90

Query: 174 LGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQA 233
           L   S+L  L+L   S  S           L+  S L  L L         HV       
Sbjct: 91  LAKNSNLVRLNLSGCSGFSEFA----LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 146

Query: 234 VNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLY 293
              +  L          +    +L       + +         +      F L  L  L 
Sbjct: 147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS 206

Query: 294 LRW-NFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNG 350
           L            E   +  L+ L +   +  G     L  +   L  L ++ ++   
Sbjct: 207 LSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT----LQLLKEALPHLQINCSHFTT 260

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 5e-06
 Identities = 54/287 (18%), Positives = 91/287 (31%), Gaps = 21/287 (7%)

Query: 133 TLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSS 192
           TLDL+  +           Q   +        SF  +   +  S   +Q++DL       
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQ--GVIAFRCP-RSFMDQPLAEHFSPFRVQHMDLSNSVIEV 60

Query: 193 NSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQG 252
           ++            LS  S L+ L+L  ++L     + L   + L  L            
Sbjct: 61  STLH--------GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 112

Query: 253 IPLSLPF----INFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFA 308
           +   L               D +E     A+     ++T L     R N     +     
Sbjct: 113 LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR 172

Query: 309 NLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEY 368
               L  LDLS+++ L     + F  L  L+ L LS       + E        P  L+ 
Sbjct: 173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS--RCYDIIPETLLELGEIPT-LKT 229

Query: 369 LDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLR 415
           L +     +G L      L +LQ   ++ + F      +IGN  +  
Sbjct: 230 LQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGNKKNQE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 9e-06
 Identities = 31/207 (14%), Positives = 64/207 (30%), Gaps = 5/207 (2%)

Query: 237 LPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRW 296
              +  + L    ++   L       + +  L L     +  I   L   ++L +L L  
Sbjct: 45  PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 104

Query: 297 NFFTGHIPNEFANLKLLEVLDLSNNLDLGG----QLPKLFGILRRLKSLDLSANNLNGEV 352
                    +        + +L+ +             +  +   +  L+LS    N + 
Sbjct: 105 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK 164

Query: 353 HEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFW-GSIPSSIGNL 411
            +        PN +      S  L+ +  +    L  LQ+L LS            +G +
Sbjct: 165 SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 224

Query: 412 SSLRKLDLSYNGMNGTIPESFGKLSEL 438
            +L+ L +     +GT+      L  L
Sbjct: 225 PTLKTLQVFGIVPDGTLQLLKEALPHL 251

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 2e-05
 Identities = 46/274 (16%), Positives = 87/274 (31%), Gaps = 22/274 (8%)

Query: 124 SLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGE-IPPQLGSLSSLQY 182
               L     +          +          +++++LS S      +   L   S LQ 
Sbjct: 16  VTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 75

Query: 183 LDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNL----GFVKLDHVGADWLQAVNMLP 238
           L L     S            +N L+  S+L  LNL    GF +          +     
Sbjct: 76  LSLEGLRLSDPI---------VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 126

Query: 239 SLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNF 298
           +L        +   + ++      T +++    +N   S +   +    +L  L L  + 
Sbjct: 127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 186

Query: 299 -FTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFD 357
                   EF  L  L+ L LS   D+  +     G +  LK+L +     +G +     
Sbjct: 187 MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLL-- 244

Query: 358 GFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQ 391
                   L +L ++ +        ++GN KN +
Sbjct: 245 -----KEALPHLQINCSHFTTIARPTIGNKKNQE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 1e-04
 Identities = 37/257 (14%), Positives = 78/257 (30%), Gaps = 30/257 (11%)

Query: 536 LSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFS 595
           LS  +       + +   L    +   ++ +DLS                     ++   
Sbjct: 21  LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLS---------------------NSVIE 59

Query: 596 GPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQ 655
                 I S   +LQ L L   +LS  I +++    +L  L++       EF      S 
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 656 --------MFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTS 707
                   + W  D +   +  ++     ++  L++     N     +   ++ C  L  
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 708 IDLGGNQLSGSLPLWISENLSSFFMLRL-RSNLLSGDIPQRLCNLQNLHIIDLSHNNFSG 766
           +DL  + +  +        L+    L L R   +  +    L  +  L  + +      G
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG 239

Query: 767 AIPRCIGNLSALVYGNN 783
            +      L  L    +
Sbjct: 240 TLQLLKEALPHLQINCS 256

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 40/285 (14%), Positives = 81/285 (28%), Gaps = 20/285 (7%)

Query: 564 RSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGR- 622
           +++DL+  +    +     +   +  +  R     P        R+Q + LS + +    
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 62

Query: 623 IPSSVCNLEDLQILSIRSNKLSGEFPNC--------WYHSQMFWGIDISNNSLTGSIPSS 674
           +   +     LQ LS+   +LS    N           +     G          S  S 
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 675 FGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLR 734
              L        +  ++   +    +  T L       N     L   +    +   +  
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 735 LRSNLLSGDIPQRLCNLQNLHIIDLSH-NNFSGAIPRCIGNLSALVYGNNSEVFQQLIWR 793
             S +L  D  Q    L  L  + LS   +        +G +  L       +      +
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

Query: 794 VVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNL 838
           ++K   P           + ++ ++ T      IGN     I  +
Sbjct: 243 LLKEALP----------HLQINCSHFTTIARPTIGNKKNQEIWGI 277

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.2 bits (116), Expect = 5e-07
 Identities = 34/203 (16%), Positives = 70/203 (34%), Gaps = 24/203 (11%)

Query: 661 DISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLP 720
           ++   S+T ++  +   L S+  ++ +N+++       +Q    +T + L GN+L+    
Sbjct: 30  NLKKKSVTDAVTQN--ELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNKLTDI-- 83

Query: 721 LWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVY 780
                NL +   L L  N +      +         ++ +  +    +       S  + 
Sbjct: 84  -KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLG 142

Query: 781 GNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSH 840
            N       L             N I+D+                 +  L+ L  L LS 
Sbjct: 143 NNKITDITVLSRLTKLDTLSLEDNQISDI---------------VPLAGLTKLQNLYLSK 187

Query: 841 NQLSGAIPQSLSSLASLSKLNLS 863
           N +S    ++L+ L +L  L L 
Sbjct: 188 NHISD--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 6e-04
 Identities = 28/206 (13%), Positives = 63/206 (30%), Gaps = 21/206 (10%)

Query: 365 NLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGM 424
                +L   S+   + ++   L ++  +  + +         I  L ++ KL L+ N +
Sbjct: 25  ETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKL 80

Query: 425 NGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNW 484
               P +  K    +  +  +      L++ + +          +       + +++   
Sbjct: 81  TDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLK---------SLSLEHNGISDINGLV 131

Query: 485 VPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLI 544
             P         N     +    L     L+    +   I         + L+  +  L 
Sbjct: 132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP------LAGLTK-LQNLY 184

Query: 545 LSNNQIKGKLPRQMNSPNLRSIDLSS 570
           LS N I   L       NL  ++L S
Sbjct: 185 LSKNHISD-LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 8e-04
 Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 5/170 (2%)

Query: 152 QLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLS 211
           +L ++  +  + S         +  L ++  L L  +  +       L      +L    
Sbjct: 44  ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENK 101

Query: 212 SLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGI-PLSLPFINFTSISVLDL 270
              L +L  +K     +     ++ +  LV L        G   ++   +      +  L
Sbjct: 102 VKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTL 161

Query: 271 SENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSN 320
           S      +    L  LT L  LYL  N  +       A LK L+VL+L +
Sbjct: 162 SLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 6e-07
 Identities = 36/236 (15%), Positives = 63/236 (26%), Gaps = 26/236 (11%)

Query: 659 GIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGS 718
                 + +T  IPS     R+   L      L      +      L  I++  N +   
Sbjct: 12  VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68

Query: 719 LPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNL--------------------HIID 758
           +   +  NL     +R+        I                              H + 
Sbjct: 69  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 128

Query: 759 LSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNN 818
               +    I       ++ V  +   V   L    ++  +    N            NN
Sbjct: 129 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN 188

Query: 819 LTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSL 874
           L     D     S   IL++S  ++       L +L  L   +    NL  K+P+L
Sbjct: 189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNL-KKLPTL 241

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 29/232 (12%), Positives = 58/232 (25%), Gaps = 2/232 (0%)

Query: 555 PRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSL-MPRLQRLY 613
             ++   + R      +           NA EL     +                   + 
Sbjct: 2   HHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEIS 61

Query: 614 LSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPS 673
            +               +  +I   ++N L    P  + +      + ISN  +      
Sbjct: 62  QNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV 121

Query: 674 SFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFML 733
                    +L + +N     I  +        S+ L  N+         + N +    L
Sbjct: 122 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDEL 181

Query: 734 RLRSNLLSGDIPQR-LCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNS 784
            L  N    ++P           I+D+S           + NL  L   +  
Sbjct: 182 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 5e-04
 Identities = 22/213 (10%), Positives = 49/213 (23%), Gaps = 3/213 (1%)

Query: 360 SGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDL 419
           S  P N   L      L      +     +L+ + +S N     I + + +         
Sbjct: 25  SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 84

Query: 420 SYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFN 479
                N          +      LL ++                +      +        
Sbjct: 85  IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 144

Query: 480 VSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSE 539
            +      F    + +    +                 +  +    + +P D F   S  
Sbjct: 145 RNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNL-SDNNNLEELPNDVFHGASG- 202

Query: 540 ITYLILSNNQIKGKLPRQMNS-PNLRSIDLSSN 571
              L +S  +I       + +   LR+    + 
Sbjct: 203 PVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 3/85 (3%)

Query: 636 LSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGI 695
           L +  N +       +  +Q+       NN+L       F       +L +S   +    
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 217

Query: 696 PCSLQNCTGLTSIDLGGNQLSGSLP 720
              L+N   L +       L   LP
Sbjct: 218 SYGLENLKKLRARST--YNLK-KLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 20/219 (9%), Positives = 46/219 (21%), Gaps = 20/219 (9%)

Query: 145 EIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNL 204
           EIP      +N   L    +               L+ +++  +       +        
Sbjct: 22  EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79

Query: 205 NWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVE---------------LRLHYCQ 249
                +     L     +      +    +     +                        
Sbjct: 80  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139

Query: 250 LQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFAN 309
           +  I  +          +L L++N                       N       + F  
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199

Query: 310 LKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNL 348
                +LD+S    +          L++L++      NL
Sbjct: 200 ASGPVILDISRT-RIHSLPSYGLENLKKLRARST--YNL 235

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.9 bits (115), Expect = 8e-07
 Identities = 28/210 (13%), Positives = 74/210 (35%), Gaps = 14/210 (6%)

Query: 660 IDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQL---- 715
           I    +++T ++  +   L  ++ L      ++      +Q    L  ++L  NQ+    
Sbjct: 24  IAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQITDLA 79

Query: 716 --SGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIG 773
                  +   E   +          L       L + Q   +  L+  +    +   + 
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139

Query: 774 NLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSAL 833
            ++ +         Q L     +  +      ++ + ++    N ++   P  + +L  L
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNL 197

Query: 834 HILNLSHNQLSGAIPQSLSSLASLSKLNLS 863
             ++L +NQ+S   P  L++ ++L  + L+
Sbjct: 198 IEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 2e-05
 Identities = 33/203 (16%), Positives = 72/203 (35%), Gaps = 14/203 (6%)

Query: 677 SLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLR 736
           +L +   +    +N++  +  +  +  G+T++   G  ++    +   + L++   L L+
Sbjct: 17  ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEGV---QYLNNLIGLELK 71

Query: 737 SNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIW---- 792
            N ++   P +         +  +      AI       +  +          L      
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 793 ---RVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQ 849
               +   +    S +    N   LS  N        + NLS L  L    N++S   P 
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP- 190

Query: 850 SLSSLASLSKLNLSFNNLAGKIP 872
            L+SL +L +++L  N ++   P
Sbjct: 191 -LASLPNLIEVHLKNNQISDVSP 212

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 5e-05
 Identities = 34/215 (15%), Positives = 76/215 (35%), Gaps = 19/215 (8%)

Query: 365 NLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGM 424
           N   +    +++   + ++  +L  +  L   G     +    +  L++L  L+L  N +
Sbjct: 20  NAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGV--TTIEGVQYLNNLIGLELKDNQI 75

Query: 425 NGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNW 484
               P         ++ +         +   Q +    L S ++T       + N+   +
Sbjct: 76  TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 135

Query: 485 VPPFRLKSIQI----------ENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFS 534
           +   ++ +I                   S    L   ++LT++   +  ISD  P    +
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP---LA 192

Query: 535 KLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLS 569
            L + +  + L NNQI   +    N+ NL  + L+
Sbjct: 193 SLPN-LIEVHLKNNQISD-VSPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 8e-05
 Identities = 36/197 (18%), Positives = 73/197 (37%), Gaps = 11/197 (5%)

Query: 125 LLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSF-SGEIPPQLGSLSSLQYL 183
           L  +  L      +   EG         L NL  L L  +          L  ++ L+  
Sbjct: 40  LDGITTLSAFGTGVTTIEG------VQYLNNLIGLELKDNQITDLAPLKNLTKITELELS 93

Query: 184 DLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVEL 243
                + S+ +G  ++   +L          L  L  +++ ++  + +  ++ L  L  L
Sbjct: 94  GNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNL 153

Query: 244 RLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHI 303
           +        +    P  N + ++ L   +N  +   P  L SL +L +++L+ N  +   
Sbjct: 154 QYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS 211

Query: 304 PNEFANLKLLEVLDLSN 320
           P   AN   L ++ L+N
Sbjct: 212 P--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 1e-04
 Identities = 36/250 (14%), Positives = 66/250 (26%), Gaps = 42/250 (16%)

Query: 512 TELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSN 571
                +      ++DT+     + L   IT L      +   +       NL  ++L  N
Sbjct: 19  ANAIKIAAGKSNVTDTVT---QADLDG-ITTLSAFGTGVT-TIEGVQYLNNLIGLELKDN 73

Query: 572 HFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLE 631
                 PL +                +    G    +   L  +       +        
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL-- 131

Query: 632 DLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNL 691
                         +  N    + +     +S  +   S  +   +L  L+ L   +N +
Sbjct: 132 ------QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKI 185

Query: 692 SGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNL 751
           S   P  L +   L  + L  NQ+S   PL                            N 
Sbjct: 186 SDISP--LASLPNLIEVHLKNNQISDVSPLA---------------------------NT 216

Query: 752 QNLHIIDLSH 761
            NL I+ L++
Sbjct: 217 SNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 4e-04
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 4/60 (6%)

Query: 361 GRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLS 420
              + L  L    N +    P  L +L NL  + L  N      P  + N S+L  + L+
Sbjct: 170 ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 33/218 (15%), Positives = 67/218 (30%), Gaps = 11/218 (5%)

Query: 128 LKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYA 187
           L     +    ++            L  +  L+   +  +  I   +  L++L  L+L  
Sbjct: 18  LANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKD 72

Query: 188 DSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHY 247
           +  +  +    L       LSG     +  +  ++           +  +  L  L    
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 248 C-QLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNE 306
              L    ++         ++  LS  +   +    L +L+ LT L    N  +   P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 307 FANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLS 344
            A+L  L  + L NN  +    P        L  + L+
Sbjct: 191 LASLPNLIEVHLKNN-QISDVSP--LANTSNLFIVTLT 225

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 46.8 bits (109), Expect = 7e-06
 Identities = 43/329 (13%), Positives = 91/329 (27%), Gaps = 40/329 (12%)

Query: 126 LHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGE----IPPQLGSLSSLQ 181
           +  K L    ++  D +   +     +  +++ + LS ++   E    +   + S   L+
Sbjct: 5   IEGKSLKLDAITTEDEK--SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 62

Query: 182 YLDLYADSFSSNSGSLALHAQNL----NWLSGLSSLKLLNLGFVKLDHVGADWLQAVNML 237
             +            +    + L         L +++L +  F            + +  
Sbjct: 63  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 122

Query: 238 PSLVEL----------RLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLT 287
              + L                LQ + ++    N   +  +    N   +          
Sbjct: 123 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 182

Query: 288 SLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNL------------DLGGQLPKLFGIL 335
              +L          I  E     LLE L     L                 L       
Sbjct: 183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 242

Query: 336 RRLKSLDLSANNLNGEVHEFFDGFSGRPNN--LEYLDLSSNSLEGELPKSL-----GNLK 388
             L+ L L+   L+            +  N  L+ L L  N +E +  ++L       + 
Sbjct: 243 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 302

Query: 389 NLQYLRLSGNSFWGSIPSSIGNLSSLRKL 417
           +L +L L+GN F       +  +  +   
Sbjct: 303 DLLFLELNGNRF-SEEDDVVDEIREVFST 330

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 31/297 (10%), Positives = 88/297 (29%), Gaps = 23/297 (7%)

Query: 606 MPRLQRLYLSWNQLS-------GRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFW 658
              ++ + LS N +            +S  +LE  +   I + ++  E P          
Sbjct: 30  DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL 89

Query: 659 GIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGS 718
                 +++  S  +   + +   +  LS +     +              +       +
Sbjct: 90  LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA 149

Query: 719 LPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGN---- 774
           +            ++  R+ L +G + +     Q+  ++       +G  P  I +    
Sbjct: 150 VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE 209

Query: 775 -LSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGN---- 829
            L+        ++       +             ++  + L+   L+ +    + +    
Sbjct: 210 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 269

Query: 830 --LSALHILNLSHNQLSGAIPQSLSS-----LASLSKLNLSFNNLAGKIPSLPNFND 879
                L  L L +N++     ++L +     +  L  L L+ N  + +   +    +
Sbjct: 270 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIRE 326

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.0 bits (94), Expect = 5e-04
 Identities = 42/345 (12%), Positives = 83/345 (24%), Gaps = 36/345 (10%)

Query: 311 KLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLD 370
           K L++  ++   +    +  +      +K + LS N +  E                   
Sbjct: 8   KSLKLDAITTEDE--KSVFAVLLEDDSVKEIVLSGNTIGTEAAR---------------- 49

Query: 371 LSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPE 430
                    L +++ + K+L+    S              L  L +  L    ++     
Sbjct: 50  --------WLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 101

Query: 431 SFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRL 490
                    +  +   S    L+     N               + +         P   
Sbjct: 102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR 161

Query: 491 KSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQI 550
             I   N     S   W +       +    +  +   P      L   + Y        
Sbjct: 162 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLD 221

Query: 551 KGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQ 610
                      +  +I L S      L L         L     +  +          LQ
Sbjct: 222 LQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-----LSARGAAAVVDAFSKLENIGLQ 276

Query: 611 RLYLSWNQLSGRIPSSVC-----NLEDLQILSIRSNKLSGEFPNC 650
            L L +N++      ++       + DL  L +  N+ S E    
Sbjct: 277 TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVV 321

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 19/139 (13%), Positives = 38/139 (27%), Gaps = 19/139 (13%)

Query: 679 RSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSN 738
           +SL +  ++  +    +   L     +  I L GN +      W+SEN++S         
Sbjct: 8   KSLKLDAITTEDEKS-VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIAS--------- 57

Query: 739 LLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGR 798
                      +L+     D+        IP  +  L   +         +L        
Sbjct: 58  ---------KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 108

Query: 799 NPEYSNIIADVNSIDLSWN 817
             E        ++      
Sbjct: 109 AQEPLIDFLSKHTPLEHLY 127

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 42/337 (12%), Positives = 88/337 (26%), Gaps = 49/337 (14%)

Query: 152 QLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLS 211
           + K+L+   ++       +   L    S++ + L     S N+            ++   
Sbjct: 6   EGKSLKLDAITTEDEK-SVFAVLLEDDSVKEIVL-----SGNTIGTEAARWLSENIASKK 59

Query: 212 SLKLLNLGFVKLDHVGADWLQAVNMLPSL-----------------------VELRLHYC 248
            L++     +    V  +  +A+ +L                            +     
Sbjct: 60  DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 119

Query: 249 QLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFT----GHIP 304
                 L L        +   ++      A+     +   L  +    N           
Sbjct: 120 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 179

Query: 305 NEFANLKLLEVLDLS----NNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFS 360
             F + +LL  + +         +   L +     + LK LDL  N              
Sbjct: 180 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 239

Query: 361 GRPNNLEYLDLSSNSLEGELPKSLGN------LKNLQYLRLSGNSFWGSIPSSI-----G 409
               NL  L L+   L      ++ +         LQ LRL  N        ++      
Sbjct: 240 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 299

Query: 410 NLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQN 446
            +  L  L+L+ N       +   ++ E+        
Sbjct: 300 KMPDLLFLELNGNRF-SEEDDVVDEIREVFSTRGRGE 335

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (103), Expect = 7e-06
 Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 16/133 (12%)

Query: 732 MLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLI 791
           +L L    L+  +   L  L  +  +DLSHN      P  +  L  L     S+   + +
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 58

Query: 792 WRVVKGRNPEYSNIIADVNSIDLSWNNLTG-QIPDEIGNLSALHILNLSHNQLSGA---I 847
             V      +          + L  N L        + +   L +LNL  N L       
Sbjct: 59  DGVANLPRLQE---------LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 109

Query: 848 PQSLSSLASLSKL 860
            +    L S+S +
Sbjct: 110 ERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 8/121 (6%)

Query: 660 IDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSL 719
           + +++  LT  +      L  ++ L LS+N L    P +L     L  +    N L    
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 59

Query: 720 PLWISENLSSFFMLRLRSNLL-SGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSAL 778
            +           L L +N L      Q L +   L +++L  N+           L+ +
Sbjct: 60  GVANLPR---LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEM 115

Query: 779 V 779
           +
Sbjct: 116 L 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 6/109 (5%)

Query: 610 QRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTG 669
           + L+L+   L+  +   +  L  +  L +  N+L    P       +     +  +    
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEV---LQASDNAL 55

Query: 670 SIPSSFGSLRSLSVLLLSNNNLSGG-IPCSLQNCTGLTSIDLGGNQLSG 717
                  +L  L  LLL NN L        L +C  L  ++L GN L  
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 7/108 (6%)

Query: 587 LFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGE 646
           L L     +     ++  L   +  L LS N+L    P+ +  L  L++L    N L   
Sbjct: 3   LHLAHKDLTVL--CHLEQL-LLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENV 58

Query: 647 FPNCWYHSQMFWGIDISNNSLTG-SIPSSFGSLRSLSVLLLSNNNLSG 693
                        + + NN L   +      S   L +L L  N+L  
Sbjct: 59  DGVANLP--RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 24/106 (22%), Positives = 30/106 (28%), Gaps = 23/106 (21%)

Query: 267 VLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKL-------------- 312
           VL L+           L  L  +T L L  N      P   A   L              
Sbjct: 2   VLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 313 -------LEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGE 351
                  L+ L L NN        +      RL  L+L  N+L  E
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 12/124 (9%)

Query: 292 LYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGE 351
           L+L     T  +      L L+  LDLS+N     +L  L   L  L+ L++   + N  
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHN-----RLRALPPALAALRCLEVLQASDN-- 53

Query: 352 VHEFFDGFSGRPNNLEYLDLSSNSLEG-ELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGN 410
                         L+ L L +N L+     + L +   L  L L GNS           
Sbjct: 54  -ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQER 111

Query: 411 LSSL 414
           L+ +
Sbjct: 112 LAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 20/139 (14%)

Query: 157 RYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLL 216
           R L+L+    +  +   L  L  + +LDL  +   +   +LA                L 
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALA---------------ALR 43

Query: 217 NLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFN 276
            L  ++      + +  V  LP L EL L   +LQ      P ++   + +L+L  NS  
Sbjct: 44  CLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103

Query: 277 S--AIPPWLFS-LTSLTKL 292
               I   L   L S++ +
Sbjct: 104 QEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.004
 Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 1/85 (1%)

Query: 538 SEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNAD-ELFLQDNRFSG 596
             +T+L LS+N+++   P       L  +  S N  E    + +     EL L +NR   
Sbjct: 20  LLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQ 79

Query: 597 PLPENIGSLMPRLQRLYLSWNQLSG 621
                     PRL  L L  N L  
Sbjct: 80  SAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 34/197 (17%), Positives = 64/197 (32%), Gaps = 15/197 (7%)

Query: 512 TELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSN 571
            E    +L    ++DT+      ++    T L      IK  +       NL  I+ S+N
Sbjct: 18  AEKMKTVLGKTNVTDTVSQTDLDQV----TTLQADRLGIK-SIDGVEYLNNLTQINFSNN 72

Query: 572 HFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLE 631
                 PL +       L +N     +             L+ +       + + + NL 
Sbjct: 73  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN-LTNLN 131

Query: 632 DLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNL 691
            L++ S   + +S            F    +++            +L +L  L +S+N +
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTD-------LKPLANLTTLERLDISSNKV 184

Query: 692 SGGIPCSLQNCTGLTSI 708
           S      L   T L S+
Sbjct: 185 SD--ISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 30/201 (14%), Positives = 66/201 (32%), Gaps = 24/201 (11%)

Query: 660 IDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSL 719
             +   ++T ++  +   L  ++ L      +       ++    LT I+   NQL+   
Sbjct: 23  TVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDIT 78

Query: 720 PLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALV 779
           PL     L    M   +   ++            L    ++  +    +           
Sbjct: 79  PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL-------- 130

Query: 780 YGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLS 839
                    +L        +    + +  +  ++ S N +T   P  + NL+ L  L++S
Sbjct: 131 --------NRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDIS 180

Query: 840 HNQLSGAIPQSLSSLASLSKL 860
            N++S      L+ L +L  L
Sbjct: 181 SNKVSD--ISVLAKLTNLESL 199

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 7e-04
 Identities = 30/140 (21%), Positives = 49/140 (35%), Gaps = 8/140 (5%)

Query: 283 LFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGI--LRRLKS 340
             +     +L LR       I N  A L   + +D S+N     ++ KL G   LRRLK+
Sbjct: 14  YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDN-----EIRKLDGFPLLRRLKT 67

Query: 341 LDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSF 400
           L ++ N +                 +   +      + +   SL +L  L  LR    + 
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 401 WGSIPSSIGNLSSLRKLDLS 420
                  I  +  +R LD  
Sbjct: 128 KHYRLYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 14/133 (10%), Positives = 43/133 (32%), Gaps = 6/133 (4%)

Query: 660 IDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSL 719
           +D+    +   I +   +L     +  S+N +             L ++ +  N++    
Sbjct: 23  LDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTLLVNNNRICRIG 79

Query: 720 PLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFS---GAIPRCIGNLS 776
                       ++   ++L+       L +L++L  + +  N  +         I  + 
Sbjct: 80  EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP 139

Query: 777 ALVYGNNSEVFQQ 789
            +   +  +V  +
Sbjct: 140 QVRVLDFQKVKLK 152

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 4/141 (2%)

Query: 253 IPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKL 312
           I  +  + N      LDL        I     +L     +    N       + F  L+ 
Sbjct: 8   IEQAAQYTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRR 64

Query: 313 LEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLS 372
           L+ L ++NN  +      L   L  L  L L+ N+L                 L  L   
Sbjct: 65  LKTLLVNNN-RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP 123

Query: 373 SNSLEGELPKSLGNLKNLQYL 393
             + +      +  +  ++ L
Sbjct: 124 VTNKKHYRLYVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.003
 Identities = 21/127 (16%), Positives = 32/127 (25%), Gaps = 18/127 (14%)

Query: 383 SLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDAN 442
              N    + L L G      I +    L     +D S N +     + F  L  L    
Sbjct: 13  QYTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTLL 69

Query: 443 LLQNSWEG---------------ILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPP 487
           +  N                   IL  +  + L  L+        T   +          
Sbjct: 70  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 129

Query: 488 FRLKSIQ 494
           +RL  I 
Sbjct: 130 YRLYVIY 136

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 27/124 (21%), Positives = 44/124 (35%), Gaps = 11/124 (8%)

Query: 302 HIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSG 361
               +     +  VL+  +++     L  +   +  L SL+LS N L     +       
Sbjct: 33  RSDPDLVAQNIDVVLNRRSSMA--ATLRIIEENIPELLSLNLSNNRLYR--LDDMSSIVQ 88

Query: 362 RPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSS-------IGNLSSL 414
           +  NL+ L+LS N L+ E          L+ L L GNS   +                 L
Sbjct: 89  KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKL 148

Query: 415 RKLD 418
            +LD
Sbjct: 149 LRLD 152

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 16/95 (16%), Positives = 26/95 (27%), Gaps = 1/95 (1%)

Query: 680 SLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNL 739
             S L  + +         L     LT + +   Q    L L     L     L +  + 
Sbjct: 9   GSSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67

Query: 740 LSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGN 774
           L    P        L  ++LS N       + +  
Sbjct: 68  LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG 102

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	906
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	100.0
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	100.0
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	100.0
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.97
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.96
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.96
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.94
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.94
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.94
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.92
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.91
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.91
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.91
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.91
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.91
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.91
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.9
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.88
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.87
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.78
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.77
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.73
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.67
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.6
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.89
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.65
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.26

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=0  Score=278.64  Aligned_cols=292  Identities=33%  Similarity=0.575  Sum_probs=166.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCC--CCCEEECCC--CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             793898999999886088999997899-9899977--332483399--99589972179522247986788677776556
Q 002574           44 LCLDAEREGLLAFKESLTDPSGRLSSW-VGQDCCK--WNGVYCNNQ--SGHVTQLNLRNPYQLINGGVGDSTAYKGSCLG  118 (906)
Q Consensus        44 ~~~~~~~~~l~~~~~~~~~~~~~~~~W-~~~~~c~--w~gv~c~~~--~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~  118 (906)
                      .|.++|++||++||+++.+|. .+++| .+.|||.  |.||+|+..  .+||++|+|+++                 .+.
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~-----------------~l~   63 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL-----------------NLP   63 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECC-----------------CCS
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCC-----------------CCC
T ss_conf             989899999999999779998-67788999999889488969748999479889989899-----------------888


Q ss_pred             C--CCCCCCCCCCCCCEEECCC-CCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf             2--0054443787889885989-999999978000048889835025775766788475999988589855898999867
Q 002574          119 G--KINPSLLHLKYLDTLDLSL-NDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSG  195 (906)
Q Consensus       119 ~--~l~~~l~~l~~L~~L~Ls~-~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~  195 (906)
                      |  .+|+.++++++|++|++++ |.+.+. +|..++++++|++|++++|.+.+..+..+..+.+|++++++.|.      
T Consensus        64 g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~------  136 (313)
T d1ogqa_          64 KPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA------  136 (313)
T ss_dssp             SCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE------
T ss_pred             CCCCCCHHHHCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCC------
T ss_conf             88879847846753352020265433300-24311454200110203564344332222201110011112245------


Q ss_pred             CCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf             73000243011129999968977984477777546887218999969982487688889966767998635998779858
Q 002574          196 SLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSF  275 (906)
Q Consensus       196 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~  275 (906)
                                                                                                     +
T Consensus       137 -------------------------------------------------------------------------------~  137 (313)
T d1ogqa_         137 -------------------------------------------------------------------------------L  137 (313)
T ss_dssp             -------------------------------------------------------------------------------E
T ss_pred             -------------------------------------------------------------------------------C
T ss_conf             -------------------------------------------------------------------------------5


Q ss_pred             CCCCHHHHHCCCCCCEEEEECCCCCCCCCHHHCCCCCC-CEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCC
Q ss_conf             99980655369999799902255533484110289999-96867798789998635431589999997558848754221
Q 002574          276 NSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLL-EVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHE  354 (906)
Q Consensus       276 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L-~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  354 (906)
                      ...+|..+..++.++.+++++|.+.+.+|..+..+..+ +.+++++| .+++..+..+..+.. ..+++..+...+..+.
T Consensus       138 ~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n-~l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~  215 (313)
T d1ogqa_         138 SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANLNL-AFVDLSRNMLEGDASV  215 (313)
T ss_dssp             ESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEECCGGGGGCCC-SEEECCSSEEEECCGG
T ss_pred             CCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCC
T ss_conf             55685122067400000023553356203121443112323102246-435332433222222-2333333433222222


Q ss_pred             CCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHC
Q ss_conf             12267999999658988588787864410129988862323376356887834799999889968576588436501004
Q 002574          355 FFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGK  434 (906)
Q Consensus       355 ~l~~l~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~  434 (906)
                      .+..+.    +++.+++.++.+.+.. ..+..+++++.|++++|++.+.+|..++.+++|+.|++++|++++.+|. ++.
T Consensus       216 ~~~~~~----~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~  289 (313)
T d1ogqa_         216 LFGSDK----NTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGN  289 (313)
T ss_dssp             GCCTTS----CCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STT
T ss_pred             CCCCCC----CCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCC-CCC
T ss_conf             222222----2111222222222222-2222455444444765706660876884799999897958835166898-666


Q ss_pred             CCCCCEEECCCCC
Q ss_conf             4667541167888
Q 002574          435 LSELVDANLLQNS  447 (906)
Q Consensus       435 l~~L~~L~l~~n~  447 (906)
                      +++|+.+++.+|+
T Consensus       290 L~~L~~l~l~~N~  302 (313)
T d1ogqa_         290 LQRFDVSAYANNK  302 (313)
T ss_dssp             GGGSCGGGTCSSS
T ss_pred             CCCCCHHHHCCCC
T ss_conf             7998978868895

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=0  Score=238.17  Aligned_cols=256  Identities=34%  Similarity=0.550  Sum_probs=212.8

Q ss_pred             CCEEECCCCCCCCC--CCCCCCCCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             10011134543345--6897778999973897668-85845479883378995289488984544689588899999899
Q 002574          608 RLQRLYLSWNQLSG--RIPSSVCNLEDLQILSIRS-NKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVL  684 (906)
Q Consensus       608 ~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  684 (906)
                      +++.|+++++.+.+  .+|..++.+++|++|++++ |.+++.+|..+.++++|++|++++|.+.+..+..+..+..|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHCCC
T ss_conf             98899898998888887984784675335202026543330024311454200110203564344332222201110011


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCC-CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf             874871465455001169999889764883755560779860877-9589923773643368354498888788677885
Q 002574          685 LLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSS-FFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNN  763 (906)
Q Consensus       685 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  763 (906)
                      ++++|.+...+|..+..++.++.+++++|++.+.+|..+.. +.. ++.+.+++|++.+..|..+..+..+ .++++++.
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~-l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~  208 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS-FSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNM  208 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC-CCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSE
T ss_pred             CCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC
T ss_conf             11224555568512206740000002355335620312144-31123231022464353324332222222-33333343


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCC
Q ss_conf             87787856334334625998520000346521378842111237421998688825335875544157897896847736
Q 002574          764 FSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQL  843 (906)
Q Consensus       764 l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  843 (906)
                      +.+.+|..+..++.+                               +.+++++|.+.+.+| .++.+++|+.|+|++|++
T Consensus       209 ~~~~~~~~~~~~~~l-------------------------------~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l  256 (313)
T d1ogqa_         209 LEGDASVLFGSDKNT-------------------------------QKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRI  256 (313)
T ss_dssp             EEECCGGGCCTTSCC-------------------------------SEEECCSSEECCBGG-GCCCCTTCCEEECCSSCC
T ss_pred             CCCCCCCCCCCCCCC-------------------------------CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCEE
T ss_conf             322222222222221-------------------------------112222222222222-222455444444765706


Q ss_pred             CCCCCCCCCCCCCCCEEECCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             2126301439999996968689663369999---9999887557988998999999999
Q 002574          844 SGAIPQSLSSLASLSKLNLSFNNLAGKIPSL---PNFNDPSIYEGNPLLCGAPLPTKCP  899 (906)
Q Consensus       844 ~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~---~~~~~~~~~~~n~~~c~~~~~~~~~  899 (906)
                      +|.+|+.+..+++|++|++++|+++|.+|..   .++.... +.||+.+||.|+. +|.
T Consensus       257 ~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~-l~~N~~l~g~plp-~c~  313 (313)
T d1ogqa_         257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA-YANNKCLCGSPLP-ACT  313 (313)
T ss_dssp             EECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGG-TCSSSEEESTTSS-CCC
T ss_pred             CCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHH-HCCCCCCCCCCCC-CCC
T ss_conf             66087688479999989795883516689866679989788-6889500198988-989

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=100.00  E-value=2.2e-39  Score=195.31  Aligned_cols=190  Identities=28%  Similarity=0.410  Sum_probs=108.5

Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             89999738976688584547988337899528948898454468958889999989987487146545500116999988
Q 002574          628 CNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTS  707 (906)
Q Consensus       628 ~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  707 (906)
                      ..+++++.+++++|.+++..+  +..+++|+.|++++|.+...  +.+..+++|+.+++++|.+++..  .+..+++|+.
T Consensus       194 ~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~  267 (384)
T d2omza2         194 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTE  267 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSE
T ss_pred             CCCCCCCEEECCCCCCCCCCC--CCCCCCCCEEECCCCCCCCC--CHHHCCCCCCHHCCCCCCCCCCC--CCCCCCCCCE
T ss_conf             223532333035774478786--44457787888877777896--13432565341004467447877--5355466877


Q ss_pred             EECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             97648837555607798608779589923773643368354498888788677885877878563343346259985200
Q 002574          708 IDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVF  787 (906)
Q Consensus       708 L~L~~n~~~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~~~~~~~~  787 (906)
                      +++++|++.+ ++..  ..++.++.+.+..|.+.+.  ..+..++.++.|++++|++++..+  +..++.|         
T Consensus       268 L~l~~~~l~~-~~~~--~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L---------  331 (384)
T d2omza2         268 LKLGANQISN-ISPL--AGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKL---------  331 (384)
T ss_dssp             EECCSSCCCC-CGGG--TTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG--GGGCTTC---------
T ss_pred             EECCCCCCCC-CCCC--CCCCCCCCCCCCCCCCCCC--CCCCHHCCCCEEECCCCCCCCCCC--CCCCCCC---------
T ss_conf             5456744578-7732--3565222233232333332--210000246767777887789845--3668988---------


Q ss_pred             HEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf             003465213788421112374219986888253358755441578978968477362126301439999996968689
Q 002574          788 QQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFN  865 (906)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~~~L~~LdLs~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~ls~N  865 (906)
                                            +.|++++|++++ ++ .++++++|+.|++++|++++..|  +.++++|+.|++++|
T Consensus       332 ----------------------~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         332 ----------------------QRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             ----------------------CEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             ----------------------CEEECCCCCCCC-CH-HHCCCCCCCEEECCCCCCCCCHH--HCCCCCCCEEECCCC
T ss_conf             ----------------------989898998999-74-67089999989897995899800--003999999639789

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=100.00  E-value=7.1e-38  Score=188.28  Aligned_cols=187  Identities=26%  Similarity=0.365  Sum_probs=102.0

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             31001113454334568977789999738976688584547988337899528948898454468958889999989987
Q 002574          607 PRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLL  686 (906)
Q Consensus       607 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  686 (906)
                      +.+..+++++|.+++..+  +..+++|+.+++++|.++..  ..+..++.|+.+++++|.+.+..  .+..+++|+.|++
T Consensus       197 ~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l  270 (384)
T d2omza2         197 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKL  270 (384)
T ss_dssp             TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEEC
T ss_pred             CCCCEEECCCCCCCCCCC--CCCCCCCCEEECCCCCCCCC--CHHHCCCCCCHHCCCCCCCCCCC--CCCCCCCCCEEEC
T ss_conf             532333035774478786--44457787888877777896--13432565341004467447877--5355466877545


Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             48714654550011699998897648837555607798608779589923773643368354498888788677885877
Q 002574          687 SNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSG  766 (906)
Q Consensus       687 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  766 (906)
                      +++++.+..  .+..++.++.+.++.|.+.+ ++. + ..+++++.|++++|++.+..  .+..+++|+.|++++|++++
T Consensus       271 ~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~-~~~-~-~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~  343 (384)
T d2omza2         271 GANQISNIS--PLAGLTALTNLELNENQLED-ISP-I-SNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD  343 (384)
T ss_dssp             CSSCCCCCG--GGTTCTTCSEEECCSSCCSC-CGG-G-GGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC
T ss_pred             CCCCCCCCC--CCCCCCCCCCCCCCCCCCCC-CCC-C-CHHCCCCEEECCCCCCCCCC--CCCCCCCCCEEECCCCCCCC
T ss_conf             674457877--32356522223323233333-221-0-00024676777788778984--53668988989898998999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCC
Q ss_conf             878563343346259985200003465213788421112374219986888253358755441578978968477
Q 002574          767 AIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHN  841 (906)
Q Consensus       767 ~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~n~l~~~~p~~l~~l~~L~~L~Ls~n  841 (906)
                       ++ .++++++|                               +.|++++|++++..|  +.++++|+.|+|++|
T Consensus       344 -l~-~l~~l~~L-------------------------------~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         344 -VS-SLANLTNI-------------------------------NWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             -CG-GGGGCTTC-------------------------------CEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             -CH-HHCCCCCC-------------------------------CEEECCCCCCCCCHH--HCCCCCCCEEECCCC
T ss_conf             -74-67089999-------------------------------989897995899800--003999999639789

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.6e-37  Score=185.67  Aligned_cols=229  Identities=23%  Similarity=0.236  Sum_probs=107.9

Q ss_pred             CCCCCCCCCCCCCEEECCCCCCCCCCCCH-HHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf             00544437878898859899999999780-00048889835025775766788475999988589855898999867730
Q 002574          120 KINPSLLHLKYLDTLDLSLNDFEGAEIPE-YFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLA  198 (906)
Q Consensus       120 ~l~~~l~~l~~L~~L~Ls~~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~  198 (906)
                      .+|+.+.  +.+++|++++|.++  .+|+ .|.++++|++|++++|.+....|..+.++++|++|++++|.+..++..  
T Consensus        24 ~lP~~l~--~~l~~L~Ls~N~i~--~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~--   97 (305)
T d1xkua_          24 KVPKDLP--PDTALLDLQNNKIT--EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK--   97 (305)
T ss_dssp             SCCCSCC--TTCCEEECCSSCCC--CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS--
T ss_pred             CCCCCCC--CCCCEEECCCCCCC--CCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEECCCCCCCCCCCCC--
T ss_conf             5198889--99798978499189--86965760465652311234434452356652798557831568756767640--


Q ss_pred             CCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC--
Q ss_conf             002430111299999689779844777775468872189999699824876888899667679986359987798589--
Q 002574          199 LHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFN--  276 (906)
Q Consensus       199 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~--  276 (906)
                                ....++.|+...+.+.....   ..                         +.....+..++...+...  
T Consensus        98 ----------~~~~l~~L~~~~n~l~~l~~---~~-------------------------~~~~~~~~~l~~~~n~~~~~  139 (305)
T d1xkua_          98 ----------MPKTLQELRVHENEITKVRK---SV-------------------------FNGLNQMIVVELGTNPLKSS  139 (305)
T ss_dssp             ----------CCTTCCEEECCSSCCCBBCH---HH-------------------------HTTCTTCCEEECCSSCCCGG
T ss_pred             ----------HHHHHHHHHCCCCCHHHHHH---HH-------------------------HHCCCCCCCCCCCCCCCCCC
T ss_conf             ----------01113232102461023444---45-------------------------40133110000123333346


Q ss_pred             CCCHHHHHCCCCCCEEEEECCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf             99806553699997999022555334841102899999686779878999863543158999999755884875422112
Q 002574          277 SAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFF  356 (906)
Q Consensus       277 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l  356 (906)
                      ...+..+..+++|+.+++.+|.+.. ++..  .+++|+.|++++| ......+..+..++.++.|++++|.+.+..+..+
T Consensus       140 ~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n-~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~  215 (305)
T d1xkua_         140 GIENGAFQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL  215 (305)
T ss_dssp             GBCTTGGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCC-CCCC--CCCCCCEEECCCC-CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             7776422345656712034677451-6710--1776678989788-6778882676413413301544553322234543


Q ss_pred             CCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCC
Q ss_conf             267999999658988588787864410129988862323376356
Q 002574          357 DGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFW  401 (906)
Q Consensus       357 ~~l~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~  401 (906)
                      ..++    +|++|++++|+++ .+|.++..+++|++|++++|+++
T Consensus       216 ~~l~----~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         216 ANTP----HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             GGST----TCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             CCCC----CCEEEECCCCCCC-CCCCCCCCCCCCCEEECCCCCCC
T ss_conf             3443----3224302554002-46311033467898989898657

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.7e-35  Score=177.20  Aligned_cols=223  Identities=23%  Similarity=0.308  Sum_probs=101.4

Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             53100111345433456897778999973897668858454798833789952894889845446895888999998998
Q 002574          606 MPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLL  685 (906)
Q Consensus       606 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  685 (906)
                      +++|++|++++|.+....+..|..++.|+.|++++|+++. +|..  ....+..|++.+|.+....+..+.....+..+.
T Consensus        54 l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~  130 (305)
T d1xkua_          54 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVE  130 (305)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEE
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHCCCCCCEECCCCCCCCC-CCCC--HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf             6565231123443445235665279855783156875676-7640--011132321024610234444540133110000


Q ss_pred             CCCCCCC--CCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf             7487146--54550011699998897648837555607798608779589923773643368354498888788677885
Q 002574          686 LSNNNLS--GGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNN  763 (906)
Q Consensus       686 L~~n~l~--~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  763 (906)
                      ...+...  ...+..+..+++|+.+++++|.+. .+|...   .++|+.|++.+|...+..+..+..++.++.|++++|.
T Consensus       131 ~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~  206 (305)
T d1xkua_         131 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS  206 (305)
T ss_dssp             CCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC---CCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCC
T ss_conf             123333346777642234565671203467745-167101---7766789897886778882676413413301544553


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCC
Q ss_conf             87787856334334625998520000346521378842111237421998688825335875544157897896847736
Q 002574          764 FSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQL  843 (906)
Q Consensus       764 l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  843 (906)
                      +.+..+..+.++++|                               +.|+|++|.++ .+|.++.++++|+.|++++|++
T Consensus       207 l~~~~~~~~~~l~~L-------------------------------~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i  254 (305)
T d1xkua_         207 ISAVDNGSLANTPHL-------------------------------RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI  254 (305)
T ss_dssp             CCEECTTTGGGSTTC-------------------------------CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCC
T ss_pred             CCCCCCCCCCCCCCC-------------------------------EEEECCCCCCC-CCCCCCCCCCCCCEEECCCCCC
T ss_conf             322234543344332-------------------------------24302554002-4631103346789898989865


Q ss_pred             CCCCCCC------CCCCCCCCEEECCCCCC
Q ss_conf             2126301------43999999696868966
Q 002574          844 SGAIPQS------LSSLASLSKLNLSFNNL  867 (906)
Q Consensus       844 ~~~ip~~------l~~l~~L~~L~ls~N~l  867 (906)
                      +..-...      +..+.+|+.+++++|++
T Consensus       255 ~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         255 SAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             CCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             CCCCHHHCCCCCHHCCCCCCCEEECCCCCC
T ss_conf             763810026721002158889788989957

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-35  Score=177.76  Aligned_cols=107  Identities=26%  Similarity=0.286  Sum_probs=35.0

Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC-CCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             011134543345689777899997389766885845479883378995289488-9845446895888999998998748
Q 002574          610 QRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDIS-NNSLTGSIPSSFGSLRSLSVLLLSN  688 (906)
Q Consensus       610 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~  688 (906)
                      ++|++++|.++...+.+|.+++.|+.+++++|.+....+..+..+..+..+.+. .+.+....+..|.++++|+.|++++
T Consensus        35 ~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~  114 (284)
T d1ozna_          35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR  114 (284)
T ss_dssp             SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCC
T ss_conf             88977488179879778641421300001344543321112122222222222210223544620101010277875688


Q ss_pred             CCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf             7146545500116999988976488375
Q 002574          689 NNLSGGIPCSLQNCTGLTSIDLGGNQLS  716 (906)
Q Consensus       689 n~l~~~~p~~l~~l~~L~~L~L~~n~~~  716 (906)
                      |.+....+..+....+|+.+++++|.++
T Consensus       115 n~~~~~~~~~~~~~~~L~~l~l~~N~l~  142 (284)
T d1ozna_         115 CGLQELGPGLFRGLAALQYLYLQDNALQ  142 (284)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCCCCCCCHHCCCCHHHHCCCCCC
T ss_conf             5443201353320001211020014314

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=178.00  Aligned_cols=11  Identities=36%  Similarity=0.274  Sum_probs=3.3

Q ss_pred             CCCEEECCCCC
Q ss_conf             89789684773
Q 002574          832 ALHILNLSHNQ  842 (906)
Q Consensus       832 ~L~~L~Ls~n~  842 (906)
                      +|+.|++++|+
T Consensus       202 ~L~~L~l~~N~  212 (284)
T d1ozna_         202 RLMTLYLFANN  212 (284)
T ss_dssp             TCCEEECCSSC
T ss_pred             HCCCCCCCCCC
T ss_conf             00023333352

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-33  Score=166.67  Aligned_cols=57  Identities=28%  Similarity=0.246  Sum_probs=20.9

Q ss_pred             CEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf             1998688825335875544157897896847736212630143999999696868966
Q 002574          810 NSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNL  867 (906)
Q Consensus       810 ~~LdLs~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~ls~N~l  867 (906)
                      +.+++++|++++..+..|..+++|+.|+|++|+++ .+|.++..+.+|+++++++||+
T Consensus       151 ~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEEECCCCC
T ss_conf             00000015652237200134212423430139785-5686677788899998369998

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-33  Score=166.45  Aligned_cols=30  Identities=27%  Similarity=0.189  Sum_probs=10.0

Q ss_pred             EEECCCCCCCCCCCHHHHCCCCCCEEECCCC
Q ss_conf             9986888253358755441578978968477
Q 002574          811 SIDLSWNNLTGQIPDEIGNLSALHILNLSHN  841 (906)
Q Consensus       811 ~LdLs~n~l~~~~p~~l~~l~~L~~L~Ls~n  841 (906)
                      .|||++|+++ .+|..+..+++|+.|+|++|
T Consensus       176 ~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         176 TLLLQENSLY-TIPKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             EEECCSSCCC-CCCTTTTTTCCCSEEECCSC
T ss_pred             EEECCCCCCC-CCCHHHCCCCCCCEEEECCC
T ss_conf             3430139785-56866777888999983699

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-33  Score=167.92  Aligned_cols=15  Identities=13%  Similarity=-0.166  Sum_probs=5.6

Q ss_pred             CCCCCCEEEEECCCC
Q ss_conf             699997999022555
Q 002574          285 SLTSLTKLYLRWNFF  299 (906)
Q Consensus       285 ~l~~L~~L~l~~n~~  299 (906)
                      .+++++.|++++|.+
T Consensus        25 ~l~~l~~L~L~~~~i   39 (460)
T d1z7xw1          25 LLQQCQVVRLDDCGL   39 (460)
T ss_dssp             HHTTCSEEEEESSCC
T ss_pred             HCCCCCEEEECCCCC
T ss_conf             677999998289999

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.96  E-value=7.6e-26  Score=132.43  Aligned_cols=54  Identities=24%  Similarity=0.317  Sum_probs=33.7

Q ss_pred             CCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf             788988598999999997800004888983502577576678847599998858985589899
Q 002574          129 KYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFS  191 (906)
Q Consensus       129 ~~L~~L~Ls~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~  191 (906)
                      .++++||++++.++  .+|+.   +++|++|++++|+++ .+|..+   .+|+.|++.+|.+.
T Consensus        38 ~~l~~LdLs~~~L~--~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~   91 (353)
T d1jl5a_          38 RQAHELELNNLGLS--SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK   91 (353)
T ss_dssp             HTCSEEECTTSCCS--CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS
T ss_pred             CCCCEEEECCCCCC--CCCCC---CCCCCEEECCCCCCC-CCCCCH---HHHHHHHHHHCCCC
T ss_conf             69989993799988--78898---789888989999796-336203---32033266551432

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.2e-32  Score=160.39  Aligned_cols=12  Identities=25%  Similarity=0.398  Sum_probs=4.1

Q ss_pred             CCCEEECCCCCC
Q ss_conf             998897648837
Q 002574          704 GLTSIDLGGNQL  715 (906)
Q Consensus       704 ~L~~L~L~~n~~  715 (906)
                      +|+.|++++|++
T Consensus       341 ~L~~L~Ls~N~i  352 (460)
T d1z7xw1         341 FLLELQISNNRL  352 (460)
T ss_dssp             SCCEEECCSSBC
T ss_pred             CHHHHHEEEECC
T ss_conf             111320121013

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1.9e-26  Score=135.28  Aligned_cols=50  Identities=22%  Similarity=0.362  Sum_probs=20.0

Q ss_pred             CEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             199868882533587554415789789684773621263014399999969686
Q 002574          810 NSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLS  863 (906)
Q Consensus       810 ~~LdLs~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~ls  863 (906)
                      +.||+++|++++ ++ .++++++|+.|++++|++++. + .+.++..|+.|+++
T Consensus       176 ~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         176 TTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLT  225 (227)
T ss_dssp             CEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEE
T ss_pred             EECCCCCCCCCC-CH-HHCCCCCCCEEECCCCCCCCC-C-CCCCCCCCCEEEEE
T ss_conf             564458884177-85-344799999897959968998-0-20369998989712

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.5e-26  Score=135.72  Aligned_cols=200  Identities=19%  Similarity=0.117  Sum_probs=92.1

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCEEE
Q ss_conf             9738976688584547988337899528948898454468-95888999998998748-714654550011699998897
Q 002574          632 DLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSI-PSSFGSLRSLSVLLLSN-NNLSGGIPCSLQNCTGLTSID  709 (906)
Q Consensus       632 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~  709 (906)
                      ++++|++++|.++...+..|.++++|++|++++|.+...+ +..|..++.++.+.+.. +.+....+..|..+++|+.++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECCCCCCCCCCHHHHHCCCHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             88999876991896496686146432321102211242010011222222222111112343222222122222222223


Q ss_pred             CCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             6488375556077986087795899237736433683544988-887886778858778785633433462599852000
Q 002574          710 LGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQ-NLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQ  788 (906)
Q Consensus       710 L~~n~~~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~~~~~~~~~  788 (906)
                      +++|.+....+......+..+..+...++.+....+..+..++ .++.+++++|.++. ++....+...+.         
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~-i~~~~~~~~~l~---------  179 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNCAFNGTQLD---------  179 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTTTTTCCEE---------
T ss_pred             CCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC-CCCCCCCCHHHH---------
T ss_conf             4211112554333222111122222221211122222222223310012200123333-222222201110---------


Q ss_pred             EEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             03465213788421112374219986888253358755441578978968477362126301439999996968
Q 002574          789 QLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNL  862 (906)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~~~L~~LdLs~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~l  862 (906)
                                           +.+++++|+++...++.|.++++|+.|++++|+++...+..|.++..|+++++
T Consensus       180 ---------------------~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         180 ---------------------ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             ---------------------EEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             ---------------------CCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCC
T ss_conf             ---------------------12123543246424788668999998989799289459779737713414767

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1.9e-25  Score=130.56  Aligned_cols=18  Identities=28%  Similarity=0.218  Sum_probs=6.3

Q ss_pred             HHCCCCCCEEECCCCCCC
Q ss_conf             004888983502577576
Q 002574          150 FGQLKNLRYLNLSFSSFS  167 (906)
Q Consensus       150 l~~l~~L~~L~L~~~~~~  167 (906)
                      +..+++|++|++++|.+.
T Consensus        59 l~~l~~L~~L~ls~n~i~   76 (227)
T d1h6ua2          59 VQYLNNLIGLELKDNQIT   76 (227)
T ss_dssp             GGGCTTCCEEECCSSCCC
T ss_pred             HHCCCCCCEEECCCCEEE
T ss_conf             744888837635785320

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.6e-25  Score=128.79  Aligned_cols=54  Identities=17%  Similarity=0.233  Sum_probs=22.6

Q ss_pred             CCCEEECCCCCCCCCCCCH-HHHCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEEC
Q ss_conf             8898859899999999780-0004888983502577576678-847599998858985
Q 002574          130 YLDTLDLSLNDFEGAEIPE-YFGQLKNLRYLNLSFSSFSGEI-PPQLGSLSSLQYLDL  185 (906)
Q Consensus       130 ~L~~L~Ls~~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~~~-p~~l~~l~~L~~L~l  185 (906)
                      ++++|++++|.+..  +|. .|.++++|++|++++|.+...+ +..+.+++.++++.+
T Consensus        30 ~l~~L~Ls~n~i~~--l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1          30 NAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             CCSEEEEESCCCCE--ECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CCCEEECCCCCCCC--CCHHHHHCCCHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCC
T ss_conf             88999876991896--496686146432321102211242010011222222222111

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.91  E-value=1.2e-23  Score=122.19  Aligned_cols=125  Identities=21%  Similarity=0.267  Sum_probs=52.5

Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             99973897668858454798833789952894889845446895888999998998748714654550011699998897
Q 002574          630 LEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSID  709 (906)
Q Consensus       630 l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  709 (906)
                      +.+|+.|++++|.++...  .+..+++|+.|++++|++++..  .+..+++|+.|++++|+++. ++ .+..+++|+.|+
T Consensus        45 L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             HCCCCEEECCCCCCCCCH--HHHHCCCCCEEECCCCCCCCCC--CCCCCCCCCCCCCCCCCCCC-CC-CCCCCCCCCCCC
T ss_conf             548458978279888744--4764899898769896025860--11358621201433333212-22-121222111223


Q ss_pred             CCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf             64883755560779860877958992377364336835449888878867788587
Q 002574          710 LGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFS  765 (906)
Q Consensus       710 L~~n~~~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  765 (906)
                      +++|.+. .++. +. .++.++.+++++|.+.+.  ..+..+++|+.+++++|.++
T Consensus       119 l~~~~~~-~~~~-l~-~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~  169 (210)
T d1h6ta2         119 LEHNGIS-DING-LV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  169 (210)
T ss_dssp             CTTSCCC-CCGG-GG-GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             CCCCCCC-CCCC-CC-CCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCC
T ss_conf             4565322-1122-01-111122211222333454--31000133210013464302

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.91  E-value=6.7e-25  Score=128.05  Aligned_cols=109  Identities=25%  Similarity=0.334  Sum_probs=48.6

Q ss_pred             CCEEECCCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             10011134543345-68977789999738976688584547988337899528948898454468958889999989987
Q 002574          608 RLQRLYLSWNQLSG-RIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLL  686 (906)
Q Consensus       608 ~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  686 (906)
                      .+++|++++|.++. ..+..|.++++|+.|++++|.+....+..+..+++|+.|++++|++....+..|.++++|+.|+|
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L  109 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCCCCC
T ss_conf             87889848987755302002578762721301363221212122211222210100355344349799807974655245


Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf             487146545500116999988976488375
Q 002574          687 SNNNLSGGIPCSLQNCTGLTSIDLGGNQLS  716 (906)
Q Consensus       687 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~  716 (906)
                      ++|.+++..+..|..+++|+.+++++|++.
T Consensus       110 ~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         110 YDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCCCCCCCCHHHHCCCCCCCCCCCCCCCCC
T ss_conf             774535359778568753342000364434

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.91  E-value=2.2e-23  Score=121.05  Aligned_cols=16  Identities=38%  Similarity=0.534  Sum_probs=5.2

Q ss_pred             HCCCCCCEEECCCCCC
Q ss_conf             4157897896847736
Q 002574          828 GNLSALHILNLSHNQL  843 (906)
Q Consensus       828 ~~l~~L~~L~Ls~n~l  843 (906)
                      .++++|+.|++++|++
T Consensus       175 ~~l~~L~~L~Ls~N~i  190 (210)
T d1h6ta2         175 AGLTKLQNLYLSKNHI  190 (210)
T ss_dssp             TTCTTCCEEECCSSCC
T ss_pred             CCCCCCCEEECCCCCC
T ss_conf             6789899998979989

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.91  E-value=3.6e-23  Score=120.00  Aligned_cols=12  Identities=8%  Similarity=0.105  Sum_probs=4.2

Q ss_pred             CCCEEECCCCCC
Q ss_conf             973897668858
Q 002574          632 DLQILSIRSNKL  643 (906)
Q Consensus       632 ~L~~L~l~~n~l  643 (906)
                      +++.|++++|.+
T Consensus        41 ~l~~L~l~~~~i   52 (199)
T d2omxa2          41 QVTTLQADRLGI   52 (199)
T ss_dssp             TCCEEECTTSCC
T ss_pred             CCCEEECCCCCC
T ss_conf             878998999999

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.1e-24  Score=127.07  Aligned_cols=261  Identities=20%  Similarity=0.127  Sum_probs=0.0

Q ss_pred             CEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf             98859899999999780000488898350257757667884759999885898558989998677300024301112999
Q 002574          132 DTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLS  211 (906)
Q Consensus       132 ~~L~Ls~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~l~~l~  211 (906)
                      +.+|++++.+....+...+..  ....+.+...... ..........+|++|+++++.+........        +.+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~~--~~~~lrl~~~~~~-~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l--------~~~c~   71 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLSQ--GVIAFRCPRSFMD-QPLAEHFSPFRVQHMDLSNSVIEVSTLHGI--------LSQCS   71 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHHT--TCSEEECTTCEEC-SCCCSCCCCBCCCEEECTTCEECHHHHHHH--------HTTBC
T ss_pred             CEEECCCCCCCCHHHHHHHHC--CCEEEECCCCCCC-CCHHHHCCCCCCCEEECCCCCCCHHHHHHH--------HHHCC
T ss_conf             779789997881479998745--5427465233345-522442567878878898984577799999--------97487


Q ss_pred             CCCEEECCCCCCCCCCCCHHHHHCCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--CHHHHHCC-C
Q ss_conf             996897798447777754688721899996998248-7688889966767998635998779858999--80655369-9
Q 002574          212 SLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHY-CQLQGIPLSLPFINFTSISVLDLSENSFNSA--IPPWLFSL-T  287 (906)
Q Consensus       212 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~--~~~~l~~l-~  287 (906)
                      +|++|+++++.+++..   +..+..+++|++|++++ ..+++.........+++|++|++++|.....  +...+... +
T Consensus        72 ~L~~L~L~~~~l~~~~---~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~  148 (284)
T d2astb2          72 KLQNLSLEGLRLSDPI---VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE  148 (284)
T ss_dssp             CCSEEECTTCBCCHHH---HHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred             CCCCCCCCCCCCCCHH---HHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCC
T ss_conf             7651452346798678---9998518997571510013412355403657887435652245332333220001000111


Q ss_pred             CCCEEEEECCCCC---CCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCC-CCCCCCCCCCCCCCCCCC
Q ss_conf             9979990225553---348411028999996867798789998635431589999997558-848754221122679999
Q 002574          288 SLTKLYLRWNFFT---GHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSA-NNLNGEVHEFFDGFSGRP  363 (906)
Q Consensus       288 ~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~~~  363 (906)
                      .|+.|+++++...   ..+......+++|++|++++|..+++.....+..+++|++|++++ ..+++.....+..++   
T Consensus       149 ~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~---  225 (284)
T d2astb2         149 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP---  225 (284)
T ss_dssp             TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT---
T ss_pred             CCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHCCC---
T ss_conf             11012213554244444343423232221235532234778303333213576877989999978737899972699---


Q ss_pred             CCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             99658988588787864410129988862323376356887834799999
Q 002574          364 NNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSS  413 (906)
Q Consensus       364 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~  413 (906)
                       +|+.|+++++--.+........+++|+.   ..+.++...++.++....
T Consensus       226 -~L~~L~l~~~~~d~~l~~l~~~lp~L~i---~~~~ls~~~~~~~~~~~~  271 (284)
T d2astb2         226 -TLKTLQVFGIVPDGTLQLLKEALPHLQI---NCSHFTTIARPTIGNKKN  271 (284)
T ss_dssp             -TCCEEECTTSSCTTCHHHHHHHSTTSEE---SCCCSCCTTCSSCSSTTC
T ss_pred             -CCCEEEEECCCCHHHHHHHHHHCCCCCC---CCCCCCCCCCCCCCCCCC
T ss_conf             -9898964488898999999976843661---686587777885476664

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.91  E-value=2.5e-24  Score=125.43  Aligned_cols=18  Identities=28%  Similarity=0.506  Sum_probs=6.6

Q ss_pred             CCCCCCCCCEEECCCCCC
Q ss_conf             544988887886778858
Q 002574          747 RLCNLQNLHIIDLSHNNF  764 (906)
Q Consensus       747 ~l~~l~~L~~L~Ls~n~l  764 (906)
                      .|..+++|+++++++|++
T Consensus       121 ~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_         121 SFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             SSTTCTTCCEEECTTCCB
T ss_pred             HHCCCCCCCCCCCCCCCC
T ss_conf             856875334200036443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.90  E-value=1e-22  Score=117.94  Aligned_cols=16  Identities=31%  Similarity=0.397  Sum_probs=5.4

Q ss_pred             HCCCCCCEEECCCCCC
Q ss_conf             0488898350257757
Q 002574          151 GQLKNLRYLNLSFSSF  166 (906)
Q Consensus       151 ~~l~~L~~L~L~~~~~  166 (906)
                      ..+++|++|++++|.+
T Consensus        59 ~~l~nL~~L~Ls~N~l   74 (199)
T d2omxa2          59 EYLNNLTQINFSNNQL   74 (199)
T ss_dssp             GGCTTCCEEECCSSCC
T ss_pred             CCCCCCCCCCCCCCCC
T ss_conf             1378867575456556

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.88  E-value=1.6e-23  Score=121.60  Aligned_cols=14  Identities=21%  Similarity=0.067  Sum_probs=4.9

Q ss_pred             CCCCCCEEECCCCC
Q ss_conf             78788988598999
Q 002574          127 HLKYLDTLDLSLND  140 (906)
Q Consensus       127 ~l~~L~~L~Ls~~~  140 (906)
                      +...|+.|++++|.
T Consensus        29 ~~~~l~~L~Ls~n~   42 (344)
T d2ca6a1          29 EDDSVKEIVLSGNT   42 (344)
T ss_dssp             HCSCCCEEECTTSE
T ss_pred             HCCCCCEEECCCCC
T ss_conf             38997889784983

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.87  E-value=4.4e-23  Score=119.62  Aligned_cols=42  Identities=12%  Similarity=0.093  Sum_probs=17.0

Q ss_pred             CHHHHCCCCCCEEECCCCCCCCC----CCCCCCCCCCCCEEECCCC
Q ss_conf             80000488898350257757667----8847599998858985589
Q 002574          147 PEYFGQLKNLRYLNLSFSSFSGE----IPPQLGSLSSLQYLDLYAD  188 (906)
Q Consensus       147 p~~l~~l~~L~~L~L~~~~~~~~----~p~~l~~l~~L~~L~l~~n  188 (906)
                      ...+.....|+.|++++|.+...    +...+...+.|+.++++++
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~   69 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI   69 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC
T ss_pred             HHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf             9999638997889784983778999999999985899888888777

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.4e-19  Score=101.58  Aligned_cols=11  Identities=27%  Similarity=0.117  Sum_probs=3.5

Q ss_pred             CCEEECCCCCC
Q ss_conf             89885989999
Q 002574          131 LDTLDLSLNDF  141 (906)
Q Consensus       131 L~~L~Ls~~~~  141 (906)
                      +|+|+|++|.+
T Consensus        20 lr~L~L~~n~I   30 (162)
T d1a9na_          20 DRELDLRGYKI   30 (162)
T ss_dssp             CEEEECTTSCC
T ss_pred             CCEEECCCCCC
T ss_conf             84897889978

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5.3e-19  Score=100.69  Aligned_cols=15  Identities=20%  Similarity=0.197  Sum_probs=5.3

Q ss_pred             CCCCCEEECCCCCCC
Q ss_conf             999738976688584
Q 002574          630 LEDLQILSIRSNKLS  644 (906)
Q Consensus       630 l~~L~~L~l~~n~l~  644 (906)
                      +..+++|++++|+++
T Consensus        17 ~~~lr~L~L~~n~I~   31 (162)
T d1a9na_          17 AVRDRELDLRGYKIP   31 (162)
T ss_dssp             TTSCEEEECTTSCCC
T ss_pred             CCCCCEEECCCCCCC
T ss_conf             574848978899788

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=1.8e-17  Score=93.59  Aligned_cols=104  Identities=32%  Similarity=0.360  Sum_probs=0.0

Q ss_pred             CEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEEECCCCCCCCCCCCCCC
Q ss_conf             58992377364336835449888878867788587787856334334625998520000346521378842111237421
Q 002574          731 FMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVN  810 (906)
Q Consensus       731 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  810 (906)
                      |.|++++|.++....  +..++.|++|++++|.++ .+|..++.++.|                               +
T Consensus         1 R~L~Ls~n~l~~l~~--l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L-------------------------------~   46 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCL-------------------------------E   46 (124)
T ss_dssp             SEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTC-------------------------------C
T ss_pred             CEEECCCCCCCCCCC--CCCCCCCCEEECCCCCCC-CCHHHHHHHHCC-------------------------------C
T ss_conf             989868998988710--105898898979787168-652156554313-------------------------------5


Q ss_pred             EEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCC
Q ss_conf             99868882533587554415789789684773621263-0143999999696868966336
Q 002574          811 SIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIP-QSLSSLASLSKLNLSFNNLAGK  870 (906)
Q Consensus       811 ~LdLs~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip-~~l~~l~~L~~L~ls~N~l~~~  870 (906)
                      .|++++|.++ .+|. ++++++|+.|++++|++....+ ..+..++.|+.+++++|+++..
T Consensus        47 ~L~l~~N~i~-~l~~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          47 VLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             EEECCSSCCC-CCGG-GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             CCCCCCCCCC-CCCC-CCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCC
T ss_conf             4532432112-3574-123355576888898658888825653799999998979968868

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.67  E-value=3.8e-18  Score=96.72  Aligned_cols=137  Identities=23%  Similarity=0.273  Sum_probs=0.0

Q ss_pred             CCCCCCCEEECCCC--CCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             16999988976488--3755560779860877958992377364336835449888878867788587787856334334
Q 002574          700 QNCTGLTSIDLGGN--QLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSA  777 (906)
Q Consensus       700 ~~l~~L~~L~L~~n--~~~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  777 (906)
                      ......+.+++.+.  ++. .++..+.. +++|+.|++++|.+...  +.+..+++|+.|++++|.++ .+|..+..+..
T Consensus        20 ~~~~~~~~~~l~~~~~~i~-~l~~sl~~-L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~   94 (198)
T d1m9la_          20 VVATEAEKVELHGMIPPIE-KMDATLST-LKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIK-KIENLDAVADT   94 (198)
T ss_dssp             CCCTTCSCEECCBCCTTCC-CCHHHHHH-TTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEEC-SCSSHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCHH-HHHHHHHC-CCCCCEEECCCCCCCCC--CCCCCCCCCCCHHHCCCCCC-CCCCCCCCCCC
T ss_conf             8545331002555568520-02467762-60461519944689986--44247825357341353432-10000332212


Q ss_pred             CCCCCCCCCHHEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC-CCCCCCCC
Q ss_conf             62599852000034652137884211123742199868882533587554415789789684773621263-01439999
Q 002574          778 LVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIP-QSLSSLAS  856 (906)
Q Consensus       778 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip-~~l~~l~~  856 (906)
                      |                               +.|++++|.++..  ..+.++++|+.|++++|+++.... ..+..++.
T Consensus        95 L-------------------------------~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~  141 (198)
T d1m9la_          95 L-------------------------------EELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK  141 (198)
T ss_dssp             C-------------------------------CEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTT
T ss_pred             C-------------------------------CCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCC
T ss_conf             3-------------------------------3333333222222--222222234111234102125542212367776


Q ss_pred             CCEEECCCCCCCCCCCCC
Q ss_conf             996968689663369999
Q 002574          857 LSKLNLSFNNLAGKIPSL  874 (906)
Q Consensus       857 L~~L~ls~N~l~~~~p~~  874 (906)
                      |++|++++|++....+..
T Consensus       142 L~~L~L~~N~l~~~~~~~  159 (198)
T d1m9la_         142 LEDLLLAGNPLYNDYKEN  159 (198)
T ss_dssp             CSEEEECSSHHHHHHCTT
T ss_pred             CCEEECCCCCCCCCCCCC
T ss_conf             302342798434676322

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.4e-15  Score=83.01  Aligned_cols=114  Identities=18%  Similarity=0.101  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf             777899997389766885845479883378995289488984-5446895888999998998748714654550011699
Q 002574          625 SSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNS-LTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCT  703 (906)
Q Consensus       625 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  703 (906)
                      +..+.+...+.++.+++.+. ..|..+..+++|+.|++.++. +....+..|..+++|+.|++++|+++...+..|..++
T Consensus         2 P~~C~c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~   80 (156)
T d2ifga3           2 PDACCPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP   80 (156)
T ss_dssp             CSSSCCSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred             CCCCCCCCCCEEEECCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCC
T ss_conf             69788699996985289976-58600257656574316898664436921225666667216202124774201112455


Q ss_pred             CCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCC
Q ss_conf             99889764883755560779860877958992377364
Q 002574          704 GLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLS  741 (906)
Q Consensus       704 ~L~~L~L~~n~~~~~~p~~l~~~l~~L~~L~L~~n~l~  741 (906)
                      +|+.|+|++|+++ .+|...+. ...|+.|+|++|.+.
T Consensus        81 ~L~~L~Ls~N~l~-~l~~~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          81 RLSRLNLSFNALE-SLSWKTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCCEEECCSSCCS-CCCSTTTC-SCCCCEEECCSSCCC
T ss_pred             CCCCEECCCCCCC-CCCHHHHC-CCCCCCCCCCCCCCC
T ss_conf             4333322678785-15745633-532124335798633

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.2e-10  Score=61.87  Aligned_cols=122  Identities=26%  Similarity=0.148  Sum_probs=0.0

Q ss_pred             CCCCEEECCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCHHHCCCCCCCEEECCCCCCCCCC--CCHHHHCCCCCCE
Q ss_conf             86359987798589998065536999979990225553348411028999996867798789998--6354315899999
Q 002574          263 TSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQ--LPKLFGILRRLKS  340 (906)
Q Consensus       263 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~--~~~~l~~l~~L~~  340 (906)
                      ...+.|+++.......    +..+..+..++...+... .+......++.|++|++++| .++..  ++..+..+++|+.
T Consensus        22 ~~~~~Ldls~l~~~~~----l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~   95 (162)
T d1koha1          22 GSQQALDLKGLRSDPD----LVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKI   95 (162)
T ss_dssp             SSSCCBCCCCCSSCTT----TTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCC
T ss_pred             HHHCEEECCCCCCCCH----HHHCCCHHHCCHHHHHHH-HHHHHHHHCCCCCEEECCCC-CCCCCCHHHHHHHHCCCCCC
T ss_conf             3308653435989821----554664011225556766-60788974878788637776-66677315889865885610


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHH-------CCCCCCCCEEE
Q ss_conf             9755884875422112267999999658988588787864410-------12998886232
Q 002574          341 LDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKS-------LGNLKNLQYLR  394 (906)
Q Consensus       341 L~l~~n~l~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~p~~-------l~~l~~L~~L~  394 (906)
                      |++++|.++....-......    .|+.+++.+|.+.......       +..+|+|+.||
T Consensus        96 L~Ls~N~i~~l~~l~~l~~~----~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          96 LNLSGNELKSERELDKIKGL----KLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             CCCTTSCCCCGGGHHHHTTC----CCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             CCCCCCCCCCCHHHHHHHCC----CCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEC
T ss_conf             00435721342344222033----1042664899767676661569999999889978799

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.65  E-value=2.2e-08  Score=51.40  Aligned_cols=114  Identities=14%  Similarity=0.087  Sum_probs=0.0

Q ss_pred             HCCCCCCEEEEEC-CCCCCC----CCHHHCCCCCCCEEECCCCCCCC----CCCCHHHHCCCCCCEEECCCCCCCCCCCC
Q ss_conf             3699997999022-555334----84110289999968677987899----98635431589999997558848754221
Q 002574          284 FSLTSLTKLYLRW-NFFTGH----IPNEFANLKLLEVLDLSNNLDLG----GQLPKLFGILRRLKSLDLSANNLNGEVHE  354 (906)
Q Consensus       284 ~~l~~L~~L~l~~-n~~~~~----~~~~l~~l~~L~~L~L~~n~~~~----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  354 (906)
                      .+.++|++|++++ +.+...    +...+...+.|+.|++++| .+.    ..+...+...+.|+.|++++|.++.....
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~   90 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLA   90 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCC-CCCHHHHHHHHHHHHHCCCCCCEEEEHHHCCHHHHH
T ss_conf             2899981978279999898999999999763776454012015-621567988753100023433003301021459999


Q ss_pred             CCCCCCCCCCCCCEEECCCCCCCCC-------CCHHCCCCCCCCEEECCCC
Q ss_conf             1226799999965898858878786-------4410129988862323376
Q 002574          355 FFDGFSGRPNNLEYLDLSSNSLEGE-------LPKSLGNLKNLQYLRLSGN  398 (906)
Q Consensus       355 ~l~~l~~~~~~L~~L~l~~~~~~~~-------~p~~l~~l~~L~~L~l~~n  398 (906)
                      .+.......++|++|+++++.....       +...+...+.|+.++++.+
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf             999999848938987788776888657999999999972998538648688

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.26  E-value=4e-08  Score=50.18  Aligned_cols=128  Identities=16%  Similarity=0.136  Sum_probs=0.0

Q ss_pred             CCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHH----CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             25553348411028999996867798789998635431----58999999755884875422112267999999658988
Q 002574          296 WNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFG----ILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDL  371 (906)
Q Consensus       296 ~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~----~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~L~~L~l  371 (906)
                      ...+...+.....+.+.|++|+++++..++......+.    ..++|+.|++++|.++......+.......+.++.+++
T Consensus         2 ~~~i~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l   81 (166)
T d1io0a_           2 STDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNV   81 (166)
T ss_dssp             CCCHHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             CCCHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             76399999999955999868876899998989999999888419825743015896117789999987752122101210


Q ss_pred             CCCCCCC----CCCHHCCCCCCCCE--EECCCCCCCC----CCCCCCCCCCCCCEEECCCCC
Q ss_conf             5887878----64410129988862--3233763568----878347999998899685765
Q 002574          372 SSNSLEG----ELPKSLGNLKNLQY--LRLSGNSFWG----SIPSSIGNLSSLRKLDLSYNG  423 (906)
Q Consensus       372 ~~~~~~~----~~p~~l~~l~~L~~--L~l~~n~~~~----~~~~~l~~l~~L~~L~L~~n~  423 (906)
                      +++.+..    .+...+...+.|+.  |++++|.+..    .+...+...+.|+.|++..+.
T Consensus        82 ~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          82 ESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             CSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf             25432201478899999848652477321677867679999999999849984788581898