Citrus Sinensis ID: 002603

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900--
MEKSTKKVSEQSKSKNADVKSLKEGLKSSLFEVSIENGKENGVRVSTNGNEDLVGDDLEEDVVVETEIEVRSGDDSENFKEKDSFYDAENEEVDDCVGISDGISLLVDVSSEMGREDGGDFNRREDVGSLNEKRENPDGEIREMSDSEKGEEDNSSDGNYEFCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYFDGTFAWCHPSQLKPFEKNFEDMSRQSSSKSFVNAVQNAVHEIGRLVELKMTCSCVPKESLDGLARPLAANSGVRPGVLVPEGGIAKLWNYLFGPSECLAELKHVAQVISIDNMLEFTELKCWLSAFYRLRGGYQLALHHEPQPIPGLEDDNHDRVLDFSHDEEGPMKGPVEEESHPSMLQKCLVNSKNGQYQRRKQKSIAEIMEGFVDTPAKNLEEDVTKEGTGSGNPPPSSSRKMRKGNDVANAGSSLSSKPKRRKVTKLLESTPETPSVESDDSKVKRKTRKVFSSREEKKKNKVSHTKNDDGNKEETNASPVSVEKTTVQRDDGEAKEQVEKSFLSRERKRSNREETNASPMSVERKTVQRDDGEAKEQVEKSFLSRERKRSKYLSPPYTSINKRQTKKDIEEFLKVSCEAQVAEQMTKAAGNLIGSKSPANLMCSDEVVRKKDAKNVGAEHEKSDSSNPEKMKPDQRTVVDTMKVKASAKDVISGIRSTAVNLDSLKEDSLDVVEGFVSVFRSSVYSNGSNYKIYNKSQPGRKRKILDSEPVSSTEDQNETELKSPEWRSRRTKMKKNEAKLMKNDKGKSDEPILKQIEDAKIKGTETNGKGKSDNSELKQVTRSQDKKKRGTETGGKAAPEIHTNKKSDGKAPPASLYVTFGPTSSLPSKKILSSFIASLDLSTKKRLKCSIIITVRGLSF
ccccccccccccccccccHHHHHHHHccccEEEEEcccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccEEcccccccHHHHHccccccEEEEEccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHcccccHHHHHcccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHcccccccccccccccHHHHHcccccccccccccccccccccccccccccccHHHHcccHHHHHHccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccHHHHHHHHHcccccccccEEEEEEEEEEcccc
cccccccccccccccccccccHHHHcccccEEEEEcccccccEEEEcccccccccccccccEEEEEEEEEEcccccccccccHcccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccEEEEEEccccccccEEEccccccHHHHHHcccccEEEEEEcccEEEccHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHccccccEcccccccccccccccHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccHHHHHcccccccHcccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccHHHcccccccccccccccccccccccccEEcccEEccccccccccccccccHcccccccccccccccccccccccccccccHHHHccccccHcccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccHHHHHHHHcHHHHHHHHccccccccHHHHHHHccccccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHEEcccccccccEEEEEEEEEEEcccc
MEKSTKKVSEQSKSKNADVKSLKEGLKSSLFEVSIEngkengvrvstngnedlvgddleedVVVETEIevrsgddsenfkekdsfydaeneevddcvgisdGISLLVDVssemgredggdfnrredvgslnekrenpdgeiremsdsekgeednssdgnyefcvgdfvwgkiksypwwpgqiydssdasdyalkvkprdrLLVAYFdgtfawchpsqlkpfeknfedmsrqssSKSFVNAVQNAVHEIGRLVELkmtcscvpkesldglarplaansgvrpgvlvpeggiaklwnylfgpseCLAELKHVAQVISIDNMLEFTELKCWLSAFYRLRGGyqlalhhepqpipgleddnhdrvldfshdeegpmkgpveeeshpsmlqkclvnskngqyqrRKQKSIAEIMEGfvdtpaknleedvtkegtgsgnpppsssrkmrkgndvanagsslsskpkrrKVTKLlestpetpsvesddskvkrktrKVFSSreekkknkvshtknddgnkeetnaspvsvekttvqrddgeaKEQVEKSFLSRERkrsnreetnaspmsverktvqrddgeaKEQVEKSFLSRErkrskylsppytsinkrQTKKDIEEFLKVSCEAQVAEQMTKAAGnligskspanlmcsdevvrkkdaknvgaeheksdssnpekmkpdqrtvvDTMKVKASAKDVISGIRSTAvnldslkedslDVVEGFVSVFRSsvysngsnykiynksqpgrkrkildsepvsstedqnetelkspewrSRRTKMKKNEAKLmkndkgksdepILKQIEDAKikgtetngkgksdnselkQVTRsqdkkkrgtetggkaapeihtnkksdgkappaslyvtfgptsslpskKILSSFIASLdlstkkrlKCSIIITVRGLSF
mekstkkvseqsksknadvkslkeglkssLFEVSiengkengvrvstngnedlvgddleedVVVETEievrsgddsenfkeKDSFYDAENEEVDDCVGISDGISLLVDVSSEmgredggdfnrredvgslnekrenpdgeiremsdsekgeednssdgnYEFCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYFDGTFAWCHPSQLKPFEKNFEDMSRQSSSKSFVNAVQNAVHEIGRLVELKMTCSCVPKESLDGLARPLAANSGVRPGVLVPEGGIAKLWNYLFGPSECLAELKHVAQVISIDNMLEFTELKCWLSAFYRLRGGYQLALHHEPQPIPGLEDDNHDRVLDFSHDEEGPMKGPVEEESHPSMLQKCLVNSKNGQYQRRKQKSIAEIMEGFVDTPAKnleedvtkegtgsgnpppsssrkmrkgndvanagsslsskpkrrkvtkllestpetpsvesddskvkrktrkvfssreekkknkvshtknddgnkeetnaspvsvekttvqrddgeakeqveksflsrerkrsnreetnaspmsverktvqrddgeakeqveksflsrerkrskylsppytsinkrqtkKDIEEFLKVSCEAQVAEQMTKAAgnligskspanLMCSDEVVRKkdaknvgaeheksdssnpekmkpdqrtvvdTMKVkasakdvisgirstavnldslkedsLDVVEGFVSVFrssvysngsnykiynksqpgrkrkildsepvsstedqnetelkspewrsrrtkmkkneaklmkndkgksdepilkqiedakikgtetngkgksdnselkqvtrsqdkkkrgtetggkaapeihtnkksdgkappASLYVTFGPTSSLPSKKILSSFIAsldlstkkrlkcsiiitvrglsf
MEKSTKKVSEQSKSKNADVKSLKEGLKSSLFEVSIENGKENGVRVSTNGNedlvgddleedvvveteievRSGDDSENFKEKDSFYDAENEEVDDCVGISDGISLLVDVSSEMGREDGGDFNRREDVGSLNEKRENPDGEIREMSDSEKGEEDNSSDGNYEFCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYFDGTFAWCHPSQLKPFEKNFEDMSRQSSSKSFVNAVQNAVHEIGRLVELKMTCSCVPKESLDGLARPLAANSGVRPGVLVPEGGIAKLWNYLFGPSECLAELKHVAQVISIDNMLEFTELKCWLSAFYRLRGGYQLALHHEPQPIPGLEDDNHDRVLDFSHDEEGPMKGPVEEESHPSMLQKCLVNSKNGQYQRRKQKSIAEIMEGFVDTPAKNLEEDVTKEGTGSGNpppsssRKMRKGNDVANAGSSLSSKPKRRKVTKLLESTPETPSVESDDSKVKRKTRKVFSSREEKKKNKVSHTKNDDGNKEETNASPVSVEKTTVQRDDGEAKEQVEKSFLSRERKRSNREETNASPMSVERKTVQRDDGEAKEQVEKSFLSRERKRSKYLSPPYTSINKRQTKKDIEEFLKVSCEAQVAEQMTKAAGNLIGSKSPANLMCSDEVVRKKDAKNVGAEHEKSDSSNPEKMKPDQRTVVDTMKVKASAKDVISGIRSTAVNLDSLKEDSLDVVEGFVSVFRSSVYSNGSNYKIYNKSQPGRKRKILDSEPVSSTEDQNETELKSPEWRSRRTKMKKNEAKLMKNDKGKSDEPILKQIEDAKIKGTETNGKGKSDNSELKQVTRSQDKKKRGTETGGKAAPEIHTNKKSDGKAPPASLYVTFGPTSSLPSKKILSSFIASLDLSTKKRLKCSIIITVRGLSF
********************************************************************************************VDDCVGISDGISLLVD**************************************************NYEFCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYFDGTFAWCHPSQL******************FVNAVQNAVHEIGRLVELKMTCSCVPKESLDGLARPLAANSGVRPGVLVPEGGIAKLWNYLFGPSECLAELKHVAQVISIDNMLEFTELKCWLSAFYRLRGGYQLALHH***************************************************************************************************************************************************************************************************************************************************************************FLKVSC*************************************************************************VISGIRSTAVNLDSLKEDSLDVVEGFVSVFRSSVYSNGSNYKIY***************************************************************************************************************************YVTF*********KILSSFIASLDLSTKKRLKCSIIITVRG***
*****************************************************************************************************************************************************************FCVGDFVWGKIKSYPWWPGQIYDSSD**********RDRLLVAYFDGTFAWCHPSQLKPFEKNFED*S***S*KSFVNAVQNAVHEIGRLVELKMTCSCV**************NSG************************CLAELKHVAQVISIDNMLEFTELKCWLSAFYRLRGGYQL*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************YVTFG**********LSSFIASLDLSTKKRLKCSIIITVRGLSF
**********************KEGLKSSLFEVSIENGKENGVRVSTNGNEDLVGDDLEEDVVVETEIEVRSGDDSENFKEKDSFYDAENEEVDDCVGISDGISLLVDVSSEMGREDGGDFNRREDVGSLN*************************DGNYEFCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYFDGTFAWCHPSQLKPFEKNF***********FVNAVQNAVHEIGRLVELKMTCSCVPKESLDGLARPLAANSGVRPGVLVPEGGIAKLWNYLFGPSECLAELKHVAQVISIDNMLEFTELKCWLSAFYRLRGGYQLALHHEPQPIPGLEDDNHDRVLDFSHDEE**************MLQKCLVNS*********QKSIAEIMEGFVDTPAKNLEED*********************************************************************************************************************************************************************KRSKYLSPPYTSINKRQTKKDIEEFLKVSCEAQVAEQMTKAAGNLIGSKSPANLMCSDEVVRKK************************RTVVDTMKVKASAKDVISGIRSTAVNLDSLKEDSLDVVEGFVSVFRSSVYSNGSNYKIYNKSQPGRKRKIL*********************RSRRTKMKKNEAKLMKNDKGKSDEPILKQIEDAKIKGT*********************************APEIHTNKKSDGKAPPASLYVTFGPTSSLPSKKILSSFIASLDLSTKKRLKCSIIITVRGLSF
*******************KSLKEGLKSSLFEVSIENGKENGVRVSTNGNEDLVGDDLEEDVVVETEIEVRS*****************NEEVDDCVGISDGISLLVDVSS***********************************************NYEFCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYFDGTFAWCHPSQLKPFEKNFEDMSRQSSSKSFVNAVQNAVHEIGRLVELKMTCSCVPKESLDGLARPLAANSGVRPGVLVPEGGIAKLWNYLFGPSECLAELKHVAQVISIDNMLEFTELKCWLSAFYRLRGGYQLALHHEPQPIP**************************************************************************************************************************************************************************************************************************************************************************************************************************************TVVDTMKVKASAKDVISGIRSTAVNLDSLKEDSLDVVEGFVSVFRSSVYSNGSNYK********************************************************SDEPILKQ*EDAKIK***********************************************KAPPASLYVTFGPTSSLPSKKILSSFIASLDLSTKKRLKCSIIITVRGLSF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEKSTKKVSEQSKSKNADVKSLKEGLKSSLFEVSIENGKENGVRVSTNGNEDLVGDDLEEDVVVETEIEVRSGDDSENFKEKDSFYDAENEEVDDCVGISDGISLLVDVSSEMGREDGGDFNRREDVGSLNEKRENPDGEIREMSDSEKGEEDNSSDGNYEFCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYFDGTFAWCHPSQLKPFEKNFEDMSRQSSSKSFVNAVQNAVHEIGRLVELKMTCSCVPKESLDGLARPLAANSGVRPGVLVPEGGIAKLWNYLFGPSECLAELKHVAQVISIDNMLEFTELKCWLSAFYRLRGGYQLALHHEPQPIPGLEDDNHDRVLDFSHDEEGPMKGPVEEESHPSMLQKCLVNSKNGQYQRRKQKSIAEIMEGFVDTPAKNLEEDVTKEGTGSGNPPPSSSRKMRKGNDVANAGSSLSSKPKRRKVTKLLESTPETPSVESDDSKVKRKTRKVFSSREEKKKNKVSHTKNDDGNKEETNASPVSVEKTTVQRDDGEAKEQVEKSFLSRERKRSNREETNASPMSVERKTVQRDDGEAKEQVEKSFLSRERKRSKYLSPPYTSINKRQTKKDIEEFLKVSCEAQVAEQMTKAAGNLIGSKSPANLMCSDEVVRKKDAKNVGAEHEKSDSSNPEKMKPDQRTVVDTMKVKASAKDVISGIRSTAVNLDSLKEDSLDVVEGFVSVFRSSVYSNGSNYKIYNKSQPGRKRKILDSEPVSSTEDQNETELKSPEWRSRRTKMKKNEAKLMKNDKGKSDEPILKQIEDAKIKGTETNGKGKSDNSELKQVTRSQDKKKRGTETGGKAAPEIHTNKKSDGKAPPASLYVTFGPTSSLPSKKILSSFIASLDLSTKKRLKCSIIITVRGLSF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query902 2.2.26 [Sep-21-2011]
Q9M3G7 3856 Serine/threonine-protein no no 0.189 0.044 0.310 2e-14
Q922P9546 Putative oxidoreductase G yes no 0.088 0.146 0.406 3e-06
Q5R7T2553 Putative oxidoreductase G yes no 0.088 0.144 0.406 4e-06
A4FUF0553 Putative oxidoreductase G yes no 0.088 0.144 0.406 4e-06
Q5RKH0552 Putative oxidoreductase G yes no 0.088 0.144 0.406 4e-06
Q49A26553 Putative oxidoreductase G yes no 0.088 0.144 0.406 4e-06
Q96N64755 PWWP domain-containing pr no no 0.069 0.083 0.388 4e-06
Q5ZLS7553 Putative oxidoreductase G yes no 0.088 0.144 0.406 4e-06
Q562D5534 Putative oxidoreductase G no no 0.085 0.144 0.420 6e-06
Q5XXA7662 Hepatoma-derived growth f no no 0.090 0.123 0.336 7e-06
>sp|Q9M3G7|ATM_ARATH Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana GN=ATM PE=2 SV=1 Back     alignment and function desciption
 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 96/190 (50%), Gaps = 19/190 (10%)

Query: 157 DGNYEFCVGDFVWGKIKSYPWWPGQIYD-SSDASDYALKVKPRDRLLVAYFDGTFAWCHP 215
           D   EF VG+ VW   K   WWPG++ D  +DA +  +        LV++F         
Sbjct: 101 DETQEFLVGNLVWVMTKYKKWWPGEVVDFKADAKESFMVRSIGQSHLVSWFAS------- 153

Query: 216 SQLKPFEKNFEDMSRQSSSKSFVNAVQNAVHEIGRLVELKMTCSCVPKESLDGLARPLAA 275
           S+LKPF+++FE +  Q +   F +A+Q A+  +   ++L MTCSC+     DG     A 
Sbjct: 154 SKLKPFKESFEQVLNQRNDNGFFDALQKAMSLLSNSLKLDMTCSCIA----DGNGIVSAQ 209

Query: 276 NSGVRPG--VLVPEGGIAKLWNYLFGPSECLAELKHVAQVISIDNMLEFTELKCWLSAFY 333
           N   R    +++ E  + +L      P E + +LK++A+ +    +LE T ++  LSAFY
Sbjct: 210 NITTRKNKPLILREFSVDRL-----EPKEFVTQLKNIAKCVLNAGVLESTVMQSQLSAFY 264

Query: 334 RLRGGYQLAL 343
            L G  Q+ +
Sbjct: 265 TLFGHKQIPM 274
Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR) or DNA replication stalling. Plays a central role in the perception and response to both stress-induced damage in somatic cells and developmentally programmed DNA damage during meiosis. Recognizes the substrate consensus sequence [ST]-Q. Phosphorylates histone variant H2AX to form H2AXS139ph at double strand breaks (DSBs), thereby regulating DNA damage response mechanism. Involved in transcriptional regulation of RAD51, PARP1, GR1, and LIG4 in response to DNA double strand breaks. Plays a dual role by activating the DNA damage response at dysfunctional telomeres and yet preventing this activation at functional telomeres. Not required for telomere length homeostasis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1
>sp|Q922P9|GLYR1_MOUSE Putative oxidoreductase GLYR1 OS=Mus musculus GN=Glyr1 PE=2 SV=1 Back     alignment and function description
>sp|Q5R7T2|GLYR1_PONAB Putative oxidoreductase GLYR1 OS=Pongo abelii GN=GLYR1 PE=2 SV=2 Back     alignment and function description
>sp|A4FUF0|GLYR1_BOVIN Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLYR1 PE=2 SV=1 Back     alignment and function description
>sp|Q5RKH0|GLYR1_RAT Putative oxidoreductase GLYR1 OS=Rattus norvegicus GN=Glyr1 PE=2 SV=1 Back     alignment and function description
>sp|Q49A26|GLYR1_HUMAN Putative oxidoreductase GLYR1 OS=Homo sapiens GN=GLYR1 PE=1 SV=3 Back     alignment and function description
>sp|Q96N64|PWP2A_HUMAN PWWP domain-containing protein 2A OS=Homo sapiens GN=PWWP2A PE=1 SV=2 Back     alignment and function description
>sp|Q5ZLS7|GLYR1_CHICK Putative oxidoreductase GLYR1 OS=Gallus gallus GN=GLYR1 PE=2 SV=1 Back     alignment and function description
>sp|Q562D5|GLYR1_XENTR Putative oxidoreductase GLYR1 OS=Xenopus tropicalis GN=glyr1 PE=2 SV=1 Back     alignment and function description
>sp|Q5XXA7|HDGR2_DANRE Hepatoma-derived growth factor-related protein 2 OS=Danio rerio GN=hdgfrp2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query902
255567349 1072 conserved hypothetical protein [Ricinus 0.854 0.719 0.398 1e-146
224080021 1010 predicted protein [Populus trichocarpa] 0.741 0.662 0.403 1e-133
225452432976 PREDICTED: uncharacterized protein LOC10 0.761 0.703 0.380 1e-124
296087652533 unnamed protein product [Vitis vinifera] 0.434 0.735 0.367 7e-81
357495845882 DNA mismatch repair protein Msh6 [Medica 0.701 0.717 0.340 4e-73
357495831719 Serine/threonine protein kinase ATM [Med 0.546 0.685 0.366 6e-72
15242667 1008 PWWP domain-containing protein [Arabidop 0.274 0.246 0.443 2e-51
297815048661 hypothetical protein ARALYDRAFT_484576 [ 0.405 0.553 0.326 1e-42
15232277652 PWWP domain-containing protein [Arabidop 0.493 0.682 0.301 4e-42
297733773 1185 unnamed protein product [Vitis vinifera] 0.351 0.267 0.359 1e-38
>gi|255567349|ref|XP_002524654.1| conserved hypothetical protein [Ricinus communis] gi|223536015|gb|EEF37673.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 376/943 (39%), Positives = 526/943 (55%), Gaps = 172/943 (18%)

Query: 35  IENGKENGVRVSTNGNE---DLVG-----------------DDLEEDVV--VETEIEVRS 72
           +++ KENGVRVS NGNE   DL G                 D LE+  +  V + ++++ 
Sbjct: 23  VKSTKENGVRVSVNGNEGSSDLDGGGVITGIQDTVHLSGNEDGLEDSEMNGVSSLLQMQG 82

Query: 73  GDDSENFKE-KDSFYDAENEEVD--DCVGISDGISLLVDVSSEMGREDGGDFN------- 122
                      D  Y  E    D  D  G  DG+SL+ D+         GD N       
Sbjct: 83  SKSLHGLGSVLDIIYKNEKMGCDSSDGDGEGDGVSLVADIC--------GDVNVNPSDVK 134

Query: 123 ---------RREDVGSLNEKRENPDGEI-REMSDSEKGEEDNSSDGNYEFCVGDFVWGKI 172
                    R E  G  NE  +  DGEI RE+      EED+  DG ++F VGDFVWGKI
Sbjct: 135 EKRPVRRGLRSESSGG-NE--DYSDGEIDREV------EEDSGDDG-HDFGVGDFVWGKI 184

Query: 173 KSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYF-DGTFAWCHPSQLKPFEKNFEDMSRQ 231
           +S+PWWPG+IYD SDASD+A KVK +D++LVAYF DGTFAWC+PSQLKP + NF +MS+Q
Sbjct: 185 RSHPWWPGRIYDPSDASDFAKKVKQKDKILVAYFGDGTFAWCNPSQLKPLDDNFVEMSKQ 244

Query: 232 SSSKSFVNAVQNAVHEIGRLVELKMTCSCVPKESLDGLARPLAANSGVRPGVLVPEGGIA 291
           S+SK+FVNAV+ A+ E+GRLV+LKMTC+CVPKE+L G  R LA N+GV+ G+L+PEGGI 
Sbjct: 245 SNSKNFVNAVEKAMDEVGRLVDLKMTCTCVPKENLIGFGRTLAVNAGVKEGLLLPEGGIN 304

Query: 292 KLWNYLFGPSECLAELKHVAQVISIDNMLEFTELKCWLSAFYRLRGGYQLALHHEPQPIP 351
           KL + LF P++ L+ L+  AQV ++ N+LE T LK WLSAF+   GG+QL  +++P+PI 
Sbjct: 305 KLSSALFEPTQFLSSLRSAAQVGTVTNILETTVLKRWLSAFHCANGGHQLPSYYDPKPIL 364

Query: 352 GLEDDNHDRVLDFSHDEEGP---MKGPVEE----------ESHPSMLQKCLVNSKNGQYQ 398
           GLEDD+ +  +D S+   G    ++GP EE          ++  SML+KC   S++G YQ
Sbjct: 365 GLEDDSRNWAVDLSNYSSGMEVRIQGPTEEDWLSSPRKNDQTTASMLKKCQGVSEDGLYQ 424

Query: 399 RRKQKSIAEIMEGFVDTPAKNLEEDVTKEGTGSGNPPPSSSRKMRK--GNDV-------- 448
           RRKQKS+AEI+EG  D   +  ++ + +EGT S      + RK RK  G +         
Sbjct: 425 RRKQKSLAEILEGQADAELEKKDDVLNEEGTMSSRSTSLTKRKKRKCVGENTRAEDKIEV 484

Query: 449 --ANAGSSL-----SSKPKRRKVTKLLESTPETPSVESDDSKVKRKTRKVFSSREEKKKN 501
             A  G+SL     SS  KRR+V+   E+  E  +   D +K   KT K  +S   KK+ 
Sbjct: 485 VDATDGASLAKPASSSGRKRRRVSG--EADAEVKNKMEDVTKAGDKTGKPPASSGGKKRK 542

Query: 502 KV--SHTKNDDGN--------KEETNASPVSVEK----TTVQRDDGEAKEQVEKSFLSRE 547
               +H  ND  +        +EE+  S    E     +T+  D    K++  K+ LSR 
Sbjct: 543 GTDEAHVDNDGSSNLLSKPKTREESKLSESFAEGNSKVSTLDADASRMKQESVKTPLSRA 602

Query: 548 RK-RSNREETNASPMSVERKTVQR-------------DDGEAKEQVEKSFLSRERKRSKY 593
           RK + +    +A  + V+ + ++              D+G+A+EQ++K  L RERKRSKY
Sbjct: 603 RKEKGSSHAKDAGSIGVKDEEMRENTVSPKKVIGGPSDNGKAEEQIQKGALLRERKRSKY 662

Query: 594 LSPPYTSINKRQTKKDIE-EFLKVSCEAQVAEQMTKAAGNLIGSKSPANLMCSDEVVRKK 652
           LSPPYT++NK   K ++E E +KVS EAQ+AE +TKAA ++IG  SP  L  S E  +K+
Sbjct: 663 LSPPYTNLNKVAKKNEVEAESVKVSSEAQLAEPLTKAASHVIG--SPPILKPSGEKFQKR 720

Query: 653 DAKNVGAEHEKSDSSNPEKMKPDQRTVVDTMKVKASAKDVISGIRSTAVNLDSLKE-DSL 711
             K  G  HE SD S P+  K DQ  ++D M +KA A +V+S +RS A+N   LKE +S+
Sbjct: 721 TPKEPGVVHETSDGSGPQTPKQDQNKIIDPMIIKAPANEVLSKMRSAALNPLYLKETNSV 780

Query: 712 DVVEGFVSVFRSSVYSNGSNYKIYNKSQPGRKRKILDSEPVSSTEDQNETELKSPEWRSR 771
           DVV  FVS FR+S Y N ++ + Y++   GRKRK   SEP S  ++QN  +  SP+ +S 
Sbjct: 781 DVVGEFVSAFRNSSYCNMTDSE-YSELHSGRKRKSQKSEPGSLVKEQNRIDQSSPDQKSH 839

Query: 772 RTKMKKNEAKLMKNDKGKSDEPILKQIEDAKIKGTETNGKGKSDNSELKQVTRSQDKKKR 831
           +TK KKN+AK+                                D  ++KQ   ++D K +
Sbjct: 840 QTKTKKNKAKV--------------------------------DKPKVKQAASARDMKTK 867

Query: 832 GTETGGKAAPEIHTNKKSDGKAPPASLYVTFGPTSSLPSKKIL 874
                         NK+ +G+ P A+LYVTFGP SSLP+K  L
Sbjct: 868 --------------NKEPNGETPGAALYVTFGPGSSLPTKNDL 896

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224080021|ref|XP_002305994.1| predicted protein [Populus trichocarpa] gi|222848958|gb|EEE86505.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225452432|ref|XP_002274197.1| PREDICTED: uncharacterized protein LOC100267992 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296087652|emb|CBI34908.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357495845|ref|XP_003618211.1| DNA mismatch repair protein Msh6 [Medicago truncatula] gi|355493226|gb|AES74429.1| DNA mismatch repair protein Msh6 [Medicago truncatula] Back     alignment and taxonomy information
>gi|357495831|ref|XP_003618204.1| Serine/threonine protein kinase ATM [Medicago truncatula] gi|355493219|gb|AES74422.1| Serine/threonine protein kinase ATM [Medicago truncatula] Back     alignment and taxonomy information
>gi|15242667|ref|NP_198850.1| PWWP domain-containing protein [Arabidopsis thaliana] gi|10178144|dbj|BAB11589.1| unnamed protein product [Arabidopsis thaliana] gi|332007152|gb|AED94535.1| PWWP domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297815048|ref|XP_002875407.1| hypothetical protein ARALYDRAFT_484576 [Arabidopsis lyrata subsp. lyrata] gi|297321245|gb|EFH51666.1| hypothetical protein ARALYDRAFT_484576 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15232277|ref|NP_189424.1| PWWP domain-containing protein [Arabidopsis thaliana] gi|11994491|dbj|BAB02532.1| unnamed protein product [Arabidopsis thaliana] gi|332643852|gb|AEE77373.1| PWWP domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297733773|emb|CBI15020.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query902
TAIR|locus:2170563 1008 AT5G40340 "AT5G40340" [Arabido 0.774 0.693 0.317 1.9e-77
TAIR|locus:2086455652 AT3G27860 "AT3G27860" [Arabido 0.269 0.372 0.382 3.5e-44
TAIR|locus:2151291632 AT5G02950 "AT5G02950" [Arabido 0.201 0.287 0.387 4.4e-30
TAIR|locus:2143631 1072 AT5G27650 "AT5G27650" [Arabido 0.200 0.168 0.379 1.2e-26
TAIR|locus:2074944726 AT3G09670 "AT3G09670" [Arabido 0.272 0.338 0.323 5.6e-25
TAIR|locus:2079767965 AT3G05430 "AT3G05430" [Arabido 0.143 0.133 0.437 9.2e-23
DICTYBASE|DDB_G0293562527 DDB_G0293562 [Dictyostelium di 0.442 0.757 0.209 3.6e-12
DICTYBASE|DDB_G0288285 1620 mybX "myb domain-containing pr 0.341 0.190 0.228 5.9e-12
TAIR|locus:2098443 2081 AT3G28770 "AT3G28770" [Arabido 0.513 0.222 0.220 7.9e-12
DICTYBASE|DDB_G0289719 1419 DDB_G0289719 "SFRS2-interactin 0.526 0.334 0.174 1.4e-11
TAIR|locus:2170563 AT5G40340 "AT5G40340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 723 (259.6 bits), Expect = 1.9e-77, Sum P(3) = 1.9e-77
 Identities = 257/810 (31%), Positives = 400/810 (49%)

Query:    89 ENEEVDDCVGISDGISLLVDVSSEMGREDGGDFNRREDVGSLNEKRENPDGEIREMSDSE 148
             E+  ++DCV   +G+S L+ +  ++  E+       E+     E+ E  DGE  E  + E
Sbjct:    66 ESGVIEDCV--MNGVSSLLKLKEDVEEEE-----EEEE----EEEEEEEDGEDEEEEEEE 114

Query:   149 KGEEDNSSDGNYEFCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYF-D 207
             + EE+    G   +CVGDFVWGKIK++PWWPGQIYD SDASD ALK+K + +LLVA F D
Sbjct:   115 EEEEEEEEHG---YCVGDFVWGKIKNHPWWPGQIYDPSDASDLALKIKQKGKLLVACFGD 171

Query:   208 GTFAWCHPSQLKPFEKNFEDMSRQSSSKSFVNAVQNAVHEIGRLVELKMTCSCVPKESLD 267
             GTFAWC  SQLKPF ++F++ S+ S+S+SF+ AV+ AV EIGR +E  + C C  +E   
Sbjct:   172 GTFAWCGASQLKPFAESFKECSKVSNSRSFLGAVEEAVEEIGRHIERVLVCDCA-EEKKH 230

Query:   268 GLARPLAANSGVRPGVLVPEGGIAKLWNYLFGP-SECLAELKHVAQVISIDNMLEFTELK 326
                 PL  N+G++ GVLV +     + + L G   E L ++K  A+ +S   +LE   LK
Sbjct:   231 EFDSPLVNNAGIKEGVLVRDVRREMISSLLIGKHGEILKDVKSFAETVSFSGLLELEILK 290

Query:   327 CWLSAFYRLRGGYQLALHHEPQPIPGLEDDNHDRVLDFSHDEEGPM---------KGPVE 377
               +SAFYR   GY L  +HEPQ +PGLED N+D   D   DEE  +         +  VE
Sbjct:   291 RKVSAFYRSNRGYGLTEYHEPQSVPGLEDKNND---DDDDDEEKNVNDGLQWRAKRSRVE 347

Query:   378 E------ESHPSM---LQKCLVNSKNGQYQRRKQKSIAEIMEGFVDTPAKNLEEDVTKEG 428
             E      E   S+   L+KC     +    RRK+KSI EI+E   ++ AK   E  T+  
Sbjct:   348 EVAALDHEESSSLQRSLEKCSGFPDHRLPHRRKEKSITEIIEK--ESAAKVRFE--TEPA 403

Query:   429 TGSGNXXXXXXRKMRKGNDVANAG-SSLSSKP--KRRKVTKLLESTPETPSVESDDSKVK 485
              G         RK  K +D  N    ++++    +RRK         E  ++E   +K  
Sbjct:   404 DGDVKSNVKSGRKKTKRHDEVNGDLENVTTTALWRRRK--------SEVATIEDGGNKQV 455

Query:   486 RKTRKVFSSREEKKKNKVSHTKNDDGNKEETNASPVSVEKTTVQRDDGEAKEQVEKSFLS 545
              ++ K  +SR++KK +      +  G+KEE+    +S         D E    ++ + L+
Sbjct:   456 VESSKGKTSRKKKKMDVDDGDDDGSGDKEESEEKEIS---------DLEIN--IDSTSLA 504

Query:   546 RERKRSNREETNASPMSVERKTVQRDDGEAKEQVEKSFLSRERKRSKYLSPPYTS--INK 603
               RK+   +++      VER T   ++GE   Q  K    RERK+SKYLSP + S    K
Sbjct:   505 SLRKKVRFDDS-----VVERST---ENGETATQTSK----RERKKSKYLSPDFLSDFSRK 552

Query:   604 RQTKKDIE-EFLKVSCEAQVAEQMTKAAGNLIG-SKSPANLMCSDEVVRKKDAKNVGAEH 661
              + K  IE E  KVS ++QV E++T A+ +L+   +   +  C          + +  E 
Sbjct:   553 GRKKSTIESESSKVSSQSQVDERVTDASDSLMEVEEDTLDKPCEPSSDNGLGQEELSREL 612

Query:   662 EKS-D----SSNPEKMKPDQRTV-VDTMKVK-ASAKDVISGI----RS----TAVNLDSL 706
               + D     + P++M+   R   + T   K +S++D++       RS       N   L
Sbjct:   613 SNAVDFLRLGATPKEMQDLIRVAALGTQYPKDSSSRDMVREFMTIYRSFTYHDGANHKFL 672

Query:   707 KE-DSLDVVEGFVSVFRSSVYSNGSNYKIYNKSQPGRKRKILDSEPVSSTEDQNETELKS 765
                DS D  +  +S     V + G       K + G+ ++  +   V+  E+ NET+ K 
Sbjct:   673 GSYDSSDKEKEELSEMGKPV-TKGKE----KKDKKGKAKQKAEEIEVTGKEE-NETD-KH 725

Query:   766 PEWRSRRTKMKKNEAKLMKNDKGKSDEPILKQIEDAKIKGTETNGKGKSDNSELKQVTRS 825
              + +  R K KK+E+K  +  +G+  +    +    + K  ++  K +SD  E  Q   S
Sbjct:   726 GKMKKER-KRKKSESK-KEGGEGEETQKEANESTKKERKRKKSESKKQSDGEEETQKEPS 783

Query:   826 Q----DKKKRGTETGGKA--APEIHTNKKS 849
             +    ++K++  E+  KA    E  T K+S
Sbjct:   784 ESTKKERKRKNPESKKKAEAVEEEETRKES 813
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0005730 "nucleolus" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2086455 AT3G27860 "AT3G27860" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2151291 AT5G02950 "AT5G02950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143631 AT5G27650 "AT5G27650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2074944 AT3G09670 "AT3G09670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079767 AT3G05430 "AT3G05430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0293562 DDB_G0293562 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288285 mybX "myb domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2098443 AT3G28770 "AT3G28770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0289719 DDB_G0289719 "SFRS2-interacting protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00040958
hypothetical protein (1010 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query902
cd0516287 cd05162, PWWP, The PWWP domain, named for a conser 6e-21
cd0583587 cd05835, Dnmt3b_related, The PWWP domain is an ess 5e-15
smart0029363 smart00293, PWWP, domain with conserved PWWP motif 3e-10
pfam0085574 pfam00855, PWWP, PWWP domain 3e-10
cd0583686 cd05836, N_Pac_NP60, The PWWP domain is an essenti 1e-09
cd05837110 cd05837, MSH6_like, The PWWP domain is present in 2e-08
cd0583483 cd05834, HDGF_related, The PWWP domain is an essen 3e-08
cd0584093 cd05840, SPBC215_ISWI_like, The PWWP domain is a c 5e-07
cd0583895 cd05838, WHSC1_related, The PWWP domain was first 6e-05
cd0608080 cd06080, MUM1_like, Mutated melanoma-associated an 2e-04
>gnl|CDD|99894 cd05162, PWWP, The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids Back     alignment and domain information 
 Score = 87.4 bits (217), Expect = 6e-21
 Identities = 34/81 (41%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 165 GDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYF-DGTFAWCHPSQLKPFEK 223
           GD VW K+K YPWWP  + D    S  A K     ++LV +F D TFAW    +LKPF +
Sbjct: 4   GDLVWAKMKGYPWWPALVVDPPKDSKKAKKKAKEGKVLVLFFGDKTFAWVGAERLKPFTE 63

Query: 224 NFEDMSRQSSSKSFVNAVQNA 244
           + E  ++QS  K F  A   A
Sbjct: 64  HKESEAKQSKRKGFKKAYDEA 84

The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors. Length = 87
>gnl|CDD|99896 cd05835, Dnmt3b_related, The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis Back     alignment and domain information
>gnl|CDD|214603 smart00293, PWWP, domain with conserved PWWP motif Back     alignment and domain information
>gnl|CDD|216154 pfam00855, PWWP, PWWP domain Back     alignment and domain information
>gnl|CDD|99897 cd05836, N_Pac_NP60, The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha Back     alignment and domain information
>gnl|CDD|99898 cd05837, MSH6_like, The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS Back     alignment and domain information
>gnl|CDD|99895 cd05834, HDGF_related, The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF Back     alignment and domain information
>gnl|CDD|99901 cd05840, SPBC215_ISWI_like, The PWWP domain is a component of the S Back     alignment and domain information
>gnl|CDD|99899 cd05838, WHSC1_related, The PWWP domain was first identified in the WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a protein implicated in Wolf-Hirschhorn syndrome (WHS) Back     alignment and domain information
>gnl|CDD|99903 cd06080, MUM1_like, Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 902
cd0583587 Dnmt3b_related The PWWP domain is an essential com 99.87
cd0516287 PWWP The PWWP domain, named for a conserved Pro-Tr 99.87
cd0583686 N_Pac_NP60 The PWWP domain is an essential part of 99.86
cd0583483 HDGF_related The PWWP domain is an essential part 99.86
cd0583895 WHSC1_related The PWWP domain was first identified 99.84
PF0085586 PWWP: PWWP domain; InterPro: IPR000313 Upon charac 99.82
cd0584093 SPBC215_ISWI_like The PWWP domain is a component o 99.79
smart0029363 PWWP domain with conserved PWWP motif. conservatio 99.74
cd0584183 BS69_related The PWWP domain is part of BS69 prote 99.73
cd05837110 MSH6_like The PWWP domain is present in MSH6, a mi 99.72
cd0608080 MUM1_like Mutated melanoma-associated antigen 1 (M 99.71
cd05839111 BR140_related The PWWP domain is found in the BR14 99.57
KOG1904496 consensus Transcription coactivator [Transcription 99.43
KOG1081463 consensus Transcription factor NSD1 and related SE 96.31
PF0816996 RBB1NT: RBB1NT (NUC162) domain; InterPro: IPR01260 89.44
smart0033357 TUDOR Tudor domain. Domain of unknown function pre 89.29
smart0074361 Agenet Tudor-like domain present in plant sequence 88.96
PF15057124 DUF4537: Domain of unknown function (DUF4537) 84.73
cd0450848 TUDOR Tudor domains are found in many eukaryotic o 83.75
>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis Back     alignment and domain information 
Probab=99.87  E-value=7.6e-23  Score=182.80  Aligned_cols=83  Identities=33%  Similarity=0.673  Sum_probs=72.6

Q ss_pred             cccCcEEEEecCCCCCCCceecCCCCcchhhhhcCCCCcEEEEEe-eCCeeeecCCCcccCchhhhhh--hcccChHHHH
Q 002603          162 FCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYF-DGTFAWCHPSQLKPFEKNFEDM--SRQSSSKSFV  238 (902)
Q Consensus       162 F~VGDLVWAKVKGYPWWPArVidpsdas~~alK~kkkg~~LVaFF-D~tfAWV~psqLkPF~enFee~--sKqsKsk~F~  238 (902)
                      |.+||||||||+|||||||+|+++......   ....+.++|+|| +++|+||.+.+|+||.++++.+  .+.++...|+
T Consensus         1 f~vGDlVWaK~kg~pwWP~~V~~~~~~~~~---~~~~~~~~V~fFGs~~~a~v~~~~l~pf~e~~~~f~~~~~~k~~~f~   77 (87)
T cd05835           1 FNVGDLVWGKIKGFPWWPGRVVSITVTSKR---PPVVGMRWVTWFGSGTFSEVSVDKLSPFSEFFKAFSRYNRKKKGLYK   77 (87)
T ss_pred             CCCCCEEEEecCCCCCCCeEEechhhcccc---cCCCCeEEEEEeCCCCEeEECHHHCcChhHhHHHHhhhhhhhhHHHH
Confidence            789999999999999999999999876432   335678999999 9999999999999999999885  3556789999


Q ss_pred             HHHHHHHHH
Q 002603          239 NAVQNAVHE  247 (902)
Q Consensus       239 eAVeEALeE  247 (902)
                      +||.+|+++
T Consensus        78 ~Ai~eA~e~   86 (87)
T cd05835          78 KAIYEALEV   86 (87)
T ss_pred             HHHHHHHHc
Confidence            999999985

In tumorigenesis, DNA methylation by Dnmt3b is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of Dnmt3b has been identified in patients with ICF syndrome (immunodeficiency, centromeric instability, and facial anomalies), a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids Back     alignment and domain information
>cd05836 N_Pac_NP60 The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha Back     alignment and domain information
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF Back     alignment and domain information
>cd05838 WHSC1_related The PWWP domain was first identified in the WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a protein implicated in Wolf-Hirschhorn syndrome (WHS) Back     alignment and domain information
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified [] Back     alignment and domain information
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S Back     alignment and domain information
>smart00293 PWWP domain with conserved PWWP motif Back     alignment and domain information
>cd05841 BS69_related The PWWP domain is part of BS69 protein, a nuclear protein that specifically binds adenoviral E1A and Epstein-Barr viral EBNA2 proteins, suppressing their transactivation functions Back     alignment and domain information
>cd05837 MSH6_like The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS Back     alignment and domain information
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA) Back     alignment and domain information
>cd05839 BR140_related The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2 Back     alignment and domain information
>KOG1904 consensus Transcription coactivator [Transcription] Back     alignment and domain information
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription] Back     alignment and domain information
>PF08169 RBB1NT: RBB1NT (NUC162) domain; InterPro: IPR012603 This domain is found N-terminal to the ARID/BRIGHT domain in DNA-binding proteins of the Retinoblastoma-binding protein 1 family [] Back     alignment and domain information
>smart00333 TUDOR Tudor domain Back     alignment and domain information
>smart00743 Agenet Tudor-like domain present in plant sequences Back     alignment and domain information
>PF15057 DUF4537: Domain of unknown function (DUF4537) Back     alignment and domain information
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query902
2gfu_A134 Nmr Solution Structure Of The Pwwp Domain Of Mismat 1e-04
1khc_A147 Crystal Structure Of The Pwwp Domain Of Mammalian D 2e-04
3flg_A151 The Pwwp Domain Of Human Dna (Cytosine-5-)-Methyltr 6e-04
4fu6_A153 Crystal Structure Of The Psip1 Pwwp Domain Length = 9e-04
>pdb|2GFU|A Chain A, Nmr Solution Structure Of The Pwwp Domain Of Mismatch Repair Protein Hmsh6 Length = 134 Back     alignment and structure 
Iteration: 1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 161 EFCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYFD--GTFAWCHPSQL 218
           +F  GD VW K++ YPWWP  +Y+      +  +     R+ V +FD   T  W     L
Sbjct: 22  DFSPGDLVWAKMEGYPWWPSLVYNHPFDGTFIREKGKSVRVHVQFFDDSPTRGWVSKRLL 81
Query: 219 KPF 221
           KP+
Sbjct: 82  KPY 84
>pdb|1KHC|A Chain A, Crystal Structure Of The Pwwp Domain Of Mammalian Dna Methyltransferase Dnmt3b Length = 147 Back     alignment and structure
>pdb|3FLG|A Chain A, The Pwwp Domain Of Human Dna (Cytosine-5-)-Methyltransferase 3 Beta Length = 151 Back     alignment and structure
>pdb|4FU6|A Chain A, Crystal Structure Of The Psip1 Pwwp Domain Length = 153 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query902
1khc_A147 DNA cytosine-5 methyltransferase 3B2; five beta-sh 1e-20
3llr_A154 DNA (cytosine-5)-methyltransferase 3A; DNA methylt 1e-20
2daq_A110 WHSC1L1 protein, isoform long; PWWP domain, struct 7e-20
2l89_A108 PWWP domain-containing protein 1; histone binding, 2e-19
2gfu_A134 DNA mismatch repair protein MSH6; PWWP domain, tud 2e-19
1h3z_A109 Hypothetical 62.8 kDa protein C215.07C; nuclear pr 1e-17
3qby_A94 Hepatoma-derived growth factor-related protein 2; 6e-17
3l42_A130 Peregrin; transcription regulation, histone H3 ace 2e-16
3pfs_A158 Bromodomain and PHD finger-containing protein 3; s 5e-16
1ri0_A110 Hepatoma-derived growth factor; HDGF, HATH domain, 5e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A* Length = 147 Back     alignment and structure
 Score = 88.4 bits (218), Expect = 1e-20
 Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 11/137 (8%)

Query: 150 GEEDNSSDGNYEFCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYF-DG 208
           G+     D   EF +GD VWGKIK + WWP  +      S    +        V +F DG
Sbjct: 1   GDSTEYQDDK-EFGIGDLVWGKIKGFSWWPAMVVSWKATSK---RQAMPGMRWVQWFGDG 56

Query: 209 TFAWCHPSQLKPFEKNFEDMSRQSSSK--SFVNAVQNAVHEIGRLVELKMTCSCVPKESL 266
            F+     +L       +  +  + +K  S+  A+ + + +         T S  P ESL
Sbjct: 57  KFSEISADKLVALGLFSQHFNLATFNKLVSYRKAMYHTLEKARV--RAGKTFSSSPGESL 114

Query: 267 DGLARPL--AANSGVRP 281
           +   +P+   A+ G +P
Sbjct: 115 EDQLKPMLEWAHGGFKP 131
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} Length = 154 Back     alignment and structure
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2 Length = 110 Back     alignment and structure
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe} Length = 108 Back     alignment and structure
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens} Length = 134 Back     alignment and structure
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} PDB: 3qj6_A* 3eae_A 1n27_A Length = 94 Back     alignment and structure
>3l42_A Peregrin; transcription regulation, histone H3 acetylation, chromatin modification, structural genomics, structural genomics CONS SGC, activator; 1.30A {Homo sapiens} PDB: 3mo8_A* 2x4w_A* 2x35_A* 2x4x_A* 2x4y_A* Length = 130 Back     alignment and structure
>3pfs_A Bromodomain and PHD finger-containing protein 3; structural genomics, structural genomics consortium, SGC, PW domain, protein binding; 1.90A {Homo sapiens} PDB: 3lyi_A* Length = 158 Back     alignment and structure
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A Length = 110 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 902
d1khca_137 b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse 8e-23
d2nlua1100 b.34.9.2 (A:1-100) Hepatoma-derived growth factor, 7e-21
d2daqa197 b.34.9.2 (A:8-104) Histone-lysine N-methyltransfer 3e-19
d1h3za_108 b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fi 5e-18
>d1khca_ b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse (Mus musculus) [TaxId: 10090]} Length = 137 Back     information, alignment and structure

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: PWWP domain
domain: DNA methyltransferase DNMT3B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 92.8 bits (230), Expect = 8e-23
 Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 8/129 (6%)

Query: 157 DGNYEFCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYFDGTFAWCHPS 216
             + EF +GD VWGKIK + WWP  +      S    +  P  R +  + DG F+     
Sbjct: 4   QDDKEFGIGDLVWGKIKGFSWWPAMVVSWKATSKR--QAMPGMRWVQWFGDGKFSEISAD 61

Query: 217 QLKPFEKNFEDMSRQSSSK--SFVNAVQNAVHEIGRLVELKMTCSCVPKESLDGLARPL- 273
           +L       +  +  + +K  S+  A+ + + +         T S  P ESL+   +P+ 
Sbjct: 62  KLVALGLFSQHFNLATFNKLVSYRKAMYHTLEKARV--RAGKTFSSSPGESLEDQLKPML 119

Query: 274 -AANSGVRP 281
             A+ G +P
Sbjct: 120 EWAHGGFKP 128
>d2nlua1 b.34.9.2 (A:1-100) Hepatoma-derived growth factor, HDGF {Human (Homo sapiens) [TaxId: 9606]} Length = 100 Back     information, alignment and structure
>d2daqa1 b.34.9.2 (A:8-104) Histone-lysine N-methyltransferase NSD3 {Human (Homo sapiens) [TaxId: 9606]} Length = 97 Back     information, alignment and structure
>d1h3za_ b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 108 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query902
d1khca_137 DNA methyltransferase DNMT3B {Mouse (Mus musculus) 99.93
d2nlua1100 Hepatoma-derived growth factor, HDGF {Human (Homo 99.89
d2daqa197 Histone-lysine N-methyltransferase NSD3 {Human (Ho 99.89
d1h3za_108 Hypothetical protein SPBC215.07c {Fission yeast (S 99.87
d2f5ka183 Mortality factor 4-like protein 1, MRG15 {Human (H 81.96
d2diqa197 Tudor and KH domain-containing protein TDRKH {Huma 81.21
>d1khca_ b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: PWWP domain
domain: DNA methyltransferase DNMT3B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=5e-27  Score=180.46  Aligned_cols=120  Identities=26%  Similarity=0.485  Sum_probs=92.9

Q ss_pred             CCCCCCCCCCEEEEECCCCCCCCCEECCCCCCCHHHHHCCCCCCEEEEEE-ECCEEEECCCCCCCCCHHHHHHHC--CCC
Q ss_conf             99988612939997048988777112389986145430499990899996-098333319983247201233211--568
Q 002603          157 DGNYEFCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYF-DGTFAWCHPSQLKPFEKNFEDMSR--QSS  233 (902)
Q Consensus       157 ~dg~~F~VGDLVWAKVKGYPWWPArVidpsdase~vlk~kkkg~vLV~FF-D~tyAWV~psqLkPF~enFeemaK--qsK  233 (902)
                      .++..|.+|||||||++|||||||+|+++...+.   .....++++|+|| |++|+||.+.+|+||.+..+.+..  .++
T Consensus         4 ~dg~~f~~GdlVWaK~~g~pwWPg~V~~~~~~~~---~~~~~~~~~V~fFGd~~~~wv~~~~L~pf~~~~~~f~~~~~~k   80 (137)
T d1khca_           4 QDDKEFGIGDLVWGKIKGFSWWPAMVVSWKATSK---RQAMPGMRWVQWFGDGKFSEISADKLVALGLFSQHFNLATFNK   80 (137)
T ss_dssp             CSSSSCCTTCEEEEEETTTEEEEEEEECGGGTTS---CCCCTTEEEEEETTTCCEEEEEGGGCEETTSHHHHCCHHHHHH
T ss_pred             CCCCCCCCCCEEEEECCCCCCCCEEECCHHHHCC---CCCCCCCEEEEEECCCCEEEECHHHCCCCHHHHHHHHHHHHHH
T ss_conf             4587576688899846897999868727555302---2688881889983589879865898856078899872665562


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--CCCCCC
Q ss_conf             178999999999999884420366688994453556786556--899878
Q 002603          234 SKSFVNAVQNAVHEIGRLVELKMTCSCVPKESLDGLARPLAA--NSGVRP  281 (902)
Q Consensus       234 sKsF~eAVeEALeEisRRve~gLsCsC~p~e~~~~~~~q~~~--NsGire  281 (902)
                      ...|++||++|++++.++  .+..|.|.+.+..++..++|++  +.|+++
T Consensus        81 ~~~f~kAi~eal~~a~~~--~~k~~~~~~~~s~ee~~~~m~ewA~ggf~P  128 (137)
T d1khca_          81 LVSYRKAMYHTLEKARVR--AGKTFSSSPGESLEDQLKPMLEWAHGGFKP  128 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHH--HTCCCCCCTTCCHHHHHHHHHHHHHTTSTT
T ss_pred             HHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf             899999999999999885--166667773336578887888763267267
>d2nlua1 b.34.9.2 (A:1-100) Hepatoma-derived growth factor, HDGF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2daqa1 b.34.9.2 (A:8-104) Histone-lysine N-methyltransferase NSD3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h3za_ b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1, MRG15 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure