Citrus Sinensis ID: 002615
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 900 | 2.2.26 [Sep-21-2011] | |||||||
| F4K1G2 | 1040 | Putative acyl-activating | yes | no | 0.985 | 0.852 | 0.555 | 0.0 | |
| Q5RG49 | 1149 | Acyl-CoA synthetase famil | yes | no | 0.377 | 0.295 | 0.313 | 6e-49 | |
| Q4L235 | 1098 | Acyl-CoA synthetase famil | yes | no | 0.365 | 0.299 | 0.337 | 4e-47 | |
| Q80WC9 | 1100 | Acyl-CoA synthetase famil | yes | no | 0.37 | 0.302 | 0.341 | 2e-43 | |
| Q9R9I9 | 2609 | Mycosubtilin synthase sub | yes | no | 0.434 | 0.149 | 0.278 | 2e-35 | |
| P0C064 | 4450 | Gramicidin S synthase 2 O | no | no | 0.416 | 0.084 | 0.279 | 4e-35 | |
| O30409 | 6486 | Tyrocidine synthase 3 OS= | N/A | no | 0.424 | 0.058 | 0.274 | 1e-34 | |
| Q70LM4 | 5085 | Linear gramicidin synthas | N/A | no | 0.452 | 0.080 | 0.281 | 2e-34 | |
| Q70LM5 | 7756 | Linear gramicidin synthas | N/A | no | 0.4 | 0.046 | 0.277 | 2e-33 | |
| Q70LM6 | 5162 | Linear gramicidin synthas | N/A | no | 0.376 | 0.065 | 0.279 | 1e-32 |
| >sp|F4K1G2|AEE19_ARATH Putative acyl-activating enzyme 19 OS=Arabidopsis thaliana GN=At5g35930 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1015 bits (2625), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/912 (55%), Positives = 643/912 (70%), Gaps = 25/912 (2%)
Query: 1 MQDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAY 60
MQ+LYP+ GE+ FKTS+ FIDH+QEFL AIL++ LV+PP LK+N+ISII FL+ Y
Sbjct: 134 MQELYPVVGEQRFAFKTSVGFIDHIQEFLGAILSSTALVIPPFTLLKENMISIIDFLEEY 193
Query: 61 SISRLTTVPSLMRVVLPALQSQ-HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISIL 119
SISRL VPS++R +LP LQ + HN + S LKL+VLSGE P+S+WD + L P L
Sbjct: 194 SISRLLAVPSMIRAILPTLQHRGHNNKLQSCLKLVVLSGEPFPVSLWDSLHSLLPETCFL 253
Query: 120 NLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEGEIYA 179
NLYGSTEVSGDCTYFDC LP +L+ + SVPIG ISNC +VL+ D KP EGEI
Sbjct: 254 NLYGSTEVSGDCTYFDCSELPRLLKTEEIGSVPIGKSISNCKVVLL-GDEDKPYEGEICV 312
Query: 180 GGLCLSNGYFSESTFMPSEYVKLHNNSICN-CSVSCGSQTYFRTGDFARRIQSGDLVFLG 238
GLCLS GY S+ YVKLHNNS+CN + CGSQ Y+RTGD+ R++ SGDL+F+G
Sbjct: 313 SGLCLSQGYM-HSSIESEGYVKLHNNSLCNHLTNDCGSQLYYRTGDYGRQLSSGDLIFIG 371
Query: 239 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEI 298
R+DRT+K+NG+RMALEEIE TL +PD+ + V+ + + EL L AF+VL ++ SS+
Sbjct: 372 RRDRTVKLNGKRMALEEIETTLELNPDIAEAVVLLSRDETELASLKAFVVLNKESNSSDG 431
Query: 299 FLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKA 358
+ SI++W+ KLP MIPN FV ++ LP+TSSGKVDY +L+ T AQ
Sbjct: 432 IIFSIRNWMGGKLPPVMIPNHFVLVEKLPLTSSGKVDYEALARLKCPTTGAQDMMQSNGT 491
Query: 359 SDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNLGIDMRLIYNFPTPSKLE 418
+ LLQ I+KA AL+V+EV D+FF +GG+S+AAAH++H+LGIDMRLIY F +PS+L
Sbjct: 492 NSLLQNIKKAVCDALLVKEVSDDDDFFAIGGDSLAAAHLSHSLGIDMRLIYQFRSPSRLL 551
Query: 419 IALLEKKGLCNLDVSADANWKLNLEEDKEH---------QFHSGYSRTENHAVVS----- 464
I L EK+G D+ + KL+ + + ++ HSG + + +
Sbjct: 552 IYLSEKEGKLREDMQHNTTQKLDHKIESQNGNGLVSRTVPLHSGVTSGPTPSKLQCEKNN 611
Query: 465 --KRLKVNSTKYFKPELHHHKDGLPWNLSSVPMSCSFSRCNKVMHEEKIRGNDLCGVNWS 522
KRLK++ K+ + +K W+ + C+FSRCNKV E + WS
Sbjct: 612 SPKRLKIDYEKFSPKRMKENK---LWDSGFSQIQCAFSRCNKVHSPESCSNEEANREYWS 668
Query: 523 LEVPRNKRGFIQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWE 582
LE+PRN+ +QE+WKVHMESCVDASPLVVLKDS YLF+GSHS KF C DAK S+ WE
Sbjct: 669 LEIPRNQMVSMQEIWKVHMESCVDASPLVVLKDSKTYLFIGSHSRKFSCIDAKSGSMYWE 728
Query: 583 IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQ 642
LEGRIE SA V+ DFSQVV+GCYKGK+YFLD+ TG + W FQ CGE+KCQPVVD Q
Sbjct: 729 TILEGRIEGSAMVVGDFSQVVIGCYKGKLYFLDFSTGSLCWKFQACGEIKCQPVVDTSSQ 788
Query: 643 LIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKA 702
LIWCGSHDH LYALD+R+ CVYKL CGGSIF SPAIDE H LYVASTSGR+ A+S+K
Sbjct: 789 LIWCGSHDHTLYALDYRSQCCVYKLQCGGSIFASPAIDEGHSSLYVASTSGRVIAVSIKD 848
Query: 703 LPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGP 762
PFHTLWL ELE P F SLCIT + ++VICCLVDG V+A+ SG+IIWR RTGGPIFAGP
Sbjct: 849 SPFHTLWLFELEAPIFGSLCITPSTQNVICCLVDGQVIAMSPSGTIIWRYRTGGPIFAGP 908
Query: 763 CTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSID 822
C S LPSQVL+C RNG +YS E ESG L+WE ++GDPITASAYIDE+L + L+ D
Sbjct: 909 CMSHVLPSQVLVCCRNGCVYSLEPESGCLVWEDNIGDPITASAYIDENLHFESHELLASD 968
Query: 823 RLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGC 882
RLV +C+SSG +H+LRV + ++ S D V E ++ELQ DIFSSPVMIGGR+FVGC
Sbjct: 969 RLVTVCSSSGRVHVLRVRPSILSRD--SHDSKVGEITRMELQADIFSSPVMIGGRIFVGC 1026
Query: 883 RDDYIYCIALET 894
RDDY++C++LE+
Sbjct: 1027 RDDYVHCLSLES 1038
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5RG49|ACSF4_DANRE Acyl-CoA synthetase family member 4 OS=Danio rerio GN=aasdh PE=3 SV=1 | Back alignment and function description |
|---|
Score = 196 bits (499), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 120/383 (31%), Positives = 195/383 (50%), Gaps = 43/383 (11%)
Query: 533 IQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECS 592
++ LW+ CVDASP++++ +F+GSHSH+ D R V+WE L R+E S
Sbjct: 790 LRVLWRSDTGRCVDASPMLLVAPDRTTVFIGSHSHRLQALDLSRGEVIWERILGDRLESS 849
Query: 593 AAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHN 652
AA+ + V +GCY ++YFLD GD WTF+T VK P VD L++ GSHD +
Sbjct: 850 AAISSCGGLVAIGCYDRQMYFLDVSCGDTVWTFETGDVVKSSPTVDPKTGLVFAGSHDGH 909
Query: 653 LYALDFRNYRCVYKLPC-GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLH 711
+YAL+ C ++ C GG++F SP + LY +S G L ++ + LW +
Sbjct: 910 VYALNPLTKTCTWQHYCGGGAVFSSPCVHLSPRQLYCSSLGGHLHCLNPDS--GKVLWKY 967
Query: 712 ELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTS------ 765
P F+S + ++ V V+GH++ + SG+ +W T GP+F+ PC S
Sbjct: 968 SSSAPFFSSPHCSDSS--VFIGSVNGHIIGISHSGNTLWDFSTDGPVFSSPCISSLTLLT 1025
Query: 766 ------------FALPSQVLIC-SRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQ 812
P+ ++ C S +G +Y ++G+LLW++ + ++ ++
Sbjct: 1026 NQPPSTTPSSSVTTSPNHIVTCGSHDGHVYCLNAQNGSLLWQFQTTGKVFSTPFVFSGAL 1085
Query: 813 LKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPV 872
L + L +C++ G + +L G+ K A L L G++FSSPV
Sbjct: 1086 WGLRT------LAAVCSTDGKVWVL------DGETGIQK-------ATLSLPGELFSSPV 1126
Query: 873 MIGGRVFVGCRDDYIYCIALETQ 895
+ G ++ VGCR+DY+YC+ L TQ
Sbjct: 1127 IWGSKLVVGCRNDYVYCLELTTQ 1149
|
Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Danio rerio (taxid: 7955) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q4L235|ACSF4_HUMAN Acyl-CoA synthetase family member 4 OS=Homo sapiens GN=AASDH PE=1 SV=3 | Back alignment and function description |
|---|
Score = 190 bits (483), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 122/361 (33%), Positives = 184/361 (50%), Gaps = 32/361 (8%)
Query: 537 WKVHMESCVDASPLVVL---KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSA 593
W+ CVDASPLVV+ S +++GSHSH+ D V WE L RIE SA
Sbjct: 759 WRSDTGKCVDASPLVVIPTFDKSSTTVYIGSHSHRMKAVDFYSGKVKWEQILGDRIESSA 818
Query: 594 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNL 653
V + +VVGCY G +Y L +G+ YW F T VK +D LI+ GSHD +
Sbjct: 819 CVSKCGNFIVVGCYNGLVYVLKSNSGEKYWMFTTEDAVKSSATMDPTTGLIYIGSHDQHA 878
Query: 654 YALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 713
YALD +CV+K CGG++F SP ++ + LY A+ G L A V + +W H
Sbjct: 879 YALDIYRKKCVWKSKCGGTVFSSPCLNLIPHHLYFATLGGLLLA--VNPATGNVIWKHSC 936
Query: 714 EVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQ-- 771
P F+S ++++ VDG+++ G +W+ T GPIF+ PCTS PS+
Sbjct: 937 GKPLFSS--PQCCSQYICIGCVDGNLLCFTHFGEQVWQFSTSGPIFSSPCTS---PSEQK 991
Query: 772 VLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSS 831
+ S + IY + G+L W++ + A+ + + S + L+ ++
Sbjct: 992 IFFGSHDCFIYCCNMK-GHLQWKFETTSRVYATPFAFHNYN------GSNEMLLAAASTD 1044
Query: 832 GSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIA 891
G + IL E+QS Q + EL G++FSSPV++ + +GCRD+Y+YC+
Sbjct: 1045 GKVWIL---------ESQSG----QLQSVYELPGEVFSSPVVLESMLIIGCRDNYVYCLD 1091
Query: 892 L 892
L
Sbjct: 1092 L 1092
|
Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q80WC9|ACSF4_MOUSE Acyl-CoA synthetase family member 4 OS=Mus musculus GN=Aasdh PE=2 SV=1 | Back alignment and function description |
|---|
Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 125/366 (34%), Positives = 185/366 (50%), Gaps = 33/366 (9%)
Query: 533 IQELWKVHMESCVDASPLVV---LKDS-DIYLFVGSHSHKFICADAKRSSVLWEIKLEGR 588
++E W+ CVDASPL+V ++D +++GSHSH D WE L R
Sbjct: 753 LRERWRSDTGKCVDASPLLVRAAVQDKPSTTVYIGSHSHTVKAVDLSSGETRWEQLLGDR 812
Query: 589 IECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGS 648
IE SA V + +VVGCY G +Y L +G+ YWTF T VK P VD LI+ GS
Sbjct: 813 IESSACVSKCGNFIVVGCYNGLVYVLKSNSGEKYWTFTTEDAVKSSPAVDPTTGLIYVGS 872
Query: 649 HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTL 708
HD + YALD +CV+KL C G++F SP + LY A+ G L A++ + T+
Sbjct: 873 HDQHAYALDIYEKKCVWKLNCEGALFSSPCVSLSPHHLYCATLGGLLLALNPAS--GSTV 930
Query: 709 WLHELEVPAFASLCITSANRHVICC-LVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFA 767
W P F+S + IC VDG ++ SG +WR GGPIF+ PC S A
Sbjct: 931 WKRSCGKPLFSS---PRCYQQYICIGCVDGSLLCFTHSGEQVWRFAAGGPIFSSPCVS-A 986
Query: 768 LPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAY-IDEHLQLKLESCLSIDRLVC 826
++ S + IY +E G+L W++ + A+ + H + S D L+
Sbjct: 987 AEQEIFFGSHDCFIYCCSKE-GHLRWKFETTARVYATPFAFSNHPR-------SDDALLA 1038
Query: 827 ICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDY 886
++ G + +L E++S + + EL G++FSSPV+ + +GCR++Y
Sbjct: 1039 AASTDGKLWVL---------ESRSGELR----SVYELPGEVFSSPVVWESMLVIGCRNNY 1085
Query: 887 IYCIAL 892
IYC+ L
Sbjct: 1086 IYCLDL 1091
|
Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA (By similarity). Putative 2-aminoadipic 6-semialdehyde dehydrogenase, which may be involved in lysine catabolism. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q9R9I9|MYCC_BACIU Mycosubtilin synthase subunit C OS=Bacillus subtilis GN=mycC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 120/431 (27%), Positives = 216/431 (50%), Gaps = 40/431 (9%)
Query: 1 MQDLYPLHGEELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQA 59
MQ+ YPL + +L KT+I+F + E F +I+ + +++P E KN I+ ++
Sbjct: 433 MQENYPLDERDAILQKTAITFDVSVWELFWWSIVGSKVVLLPNGGE--KNPELILDTIEQ 490
Query: 60 YSISRLTTVPSLMRVVLPALQSQHNMHVP---SSLKLLVLSGEVLPLSMWDIISKLFPNI 116
+S L VP+++ L +++ + + +SL+ + SGE L D ++ +
Sbjct: 491 KGVSTLHFVPAMLHAFLESMEQTPSGKLKRKLASLRYVFASGEALTPKHVDGFQRIITPV 550
Query: 117 S---ILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPD 173
S I+NLYG TE + D +YF+C+ SVPIG PISN + ++++ ++P
Sbjct: 551 SHAQIINLYGPTEATIDVSYFECE------ADKRYNSVPIGKPISNIQLYILQAGYMQPV 604
Query: 174 --EGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS 231
GE+ G L+ GY + ++VK S G + Y RTGD AR +
Sbjct: 605 GVAGELCIAGDGLARGYLNRPELTAEKFVK--------NPFSAGERMY-RTGDLARWLPD 655
Query: 232 GDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKE 291
G++ +LGR D +KI G R+ E+E L P + ++ V++ + E + L A+ +
Sbjct: 656 GNIEYLGRIDHQVKIRGYRIETGEVEAALFHIPSIQESIVLAQEINEE-ISLCAYYTAND 714
Query: 292 KKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQH 351
T+ E ++ +S +LP MIP F+ + +P+T +GK+D +L + +
Sbjct: 715 TLTAGE-----LREHLSRQLPSYMIPAYFIQLKRMPLTLNGKIDRRALPSPRENLTGMDY 769
Query: 352 DADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNL-----GIDMR 406
A T +L +++ + L +E V D+FF +GG+SI + V+ L +++
Sbjct: 770 TAPRT---ELEKILAATWESVLGLERVGVSDHFFELGGDSIKSIQVSSRLYQAGYKFEIK 826
Query: 407 LIYNFPTPSKL 417
++ +PT S+L
Sbjct: 827 HLFKYPTISEL 837
|
This protein is a multifunctional enzyme, able to activate and polymerize the amino acids Ser and Asn as part of the synthesis of mycosubtilin. The Ser residue is further epimerized to the D-isomer form. The activation sites for these amino acids consist of individual domains. Bacillus subtilis (taxid: 1423) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|P0C064|GRSB_BREBE Gramicidin S synthase 2 OS=Brevibacillus brevis GN=grsB PE=1 SV=2 | Back alignment and function description |
|---|
Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 120/430 (27%), Positives = 217/430 (50%), Gaps = 55/430 (12%)
Query: 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSI 62
D +P+ LL S +F +F A+LT L+V P E+K + S+ ++ Y I
Sbjct: 2721 DTFPVR----LLQMASFAFDVSAGDFARALLTGGQLIVCPN-EVKMDPASLYAIIKKYDI 2775
Query: 63 SRLTTVPSLMRVVLPALQSQHNMHVP-SSLKLLVLSGEVLPLSMWD---IISKLFPNISI 118
+ P+L V+P ++ + + S L++L++ + SM D ++S+ I I
Sbjct: 2776 TIFEATPAL---VIPLMEYIYEQKLDISQLQILIVGSD--SCSMEDFKTLVSRFGSTIRI 2830
Query: 119 LNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI-VLVESDTVKPDE--G 175
+N YG TE D +Y++ + + +VPIG P +N + ++ + ++P G
Sbjct: 2831 VNSYGVTEACIDSSYYEQ----PLSSLHVTGTVPIGKPYANMKMYIMNQYLQIQPVGVIG 2886
Query: 176 EIYAGGLCLSNGYFSE-----STFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQ 230
E+ GG ++ GY + F+P+ +V + +RTGD AR +
Sbjct: 2887 ELCIGGAGVARGYLNRPDLTAEKFVPNPFVP--------------GEKLYRTGDLARWMP 2932
Query: 231 SGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLK 290
G++ FLGR D +KI G R+ L EIE LR H + + V++ + + L A++V
Sbjct: 2933 DGNVEFLGRNDHQVKIRGIRIELGEIEAQLRKHDSIKEATVIAREDHMKEKYLCAYMV-- 2990
Query: 291 EKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASL-SASTSFTISA 349
T E+ ++ +++++++ LP AMIP+ FV ++++P+T++GK+D SL S +I
Sbjct: 2991 ---TEGEVNVAELRAYLATDLPAAMIPSYFVSLEAMPLTANGKIDKRSLPEPDGSISIGT 3047
Query: 350 QHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNL------GI 403
++ A T L+ I K L ++ V HD+FFT+GG+S+ A V + +
Sbjct: 3048 EYVAPRTMLEGKLEEIWK---DVLGLQRVGIHDDFFTIGGHSLKAMAVISQVHKECQTEV 3104
Query: 404 DMRLIYNFPT 413
+R+++ PT
Sbjct: 3105 PLRVLFETPT 3114
|
This protein is a multifunctional enzyme, able to activate and polymerize the amino acids Pro, Val, Orn and Leu. Activation sites for these AA consist of individual domains. Brevibacillus brevis (taxid: 1393) |
| >sp|O30409|TYCC_BREPA Tyrocidine synthase 3 OS=Brevibacillus parabrevis GN=tycC PE=1 SV=1 | Back alignment and function description |
|---|
Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 119/433 (27%), Positives = 213/433 (49%), Gaps = 51/433 (11%)
Query: 1 MQDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAY 60
M++ +PL E+ +L KT SF + EF ++T LV+ + +++ + ++
Sbjct: 1672 MRETFPLTTEDAVLQKTPFSFDASVWEFYLPLITGGQLVLAKP-DGHRDIAYMTRLIRDE 1730
Query: 61 SISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFP--NISI 118
I+ L VPSL+ +V+ + +SL+ + GE L ++ +S+ + +
Sbjct: 1731 KITTLQMVPSLLDLVM----TDPGWSACTSLQRVFCGGEALTPAL---VSRFYETQQAQL 1783
Query: 119 LNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE-SDTVKPD--EG 175
+NLYG TE + D TY+ C R ++PIG PI N + +V S+ ++P G
Sbjct: 1784 INLYGPTETTIDATYWPCPR------QQEYSAIPIGKPIDNVRLYVVNASNQLQPVGVAG 1837
Query: 176 EIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLV 235
E+ G L+ GY+ +L S + G T +RTGD R + G +
Sbjct: 1838 ELCIAGDGLARGYWQRE--------ELTKASFVDNPFEPGG-TMYRTGDMVRYLPDGHIE 1888
Query: 236 FLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTS 295
+LGR D +KI G R+ L EIE TL H V V++ + L A++V ++ +
Sbjct: 1889 YLGRIDHQVKIRGHRIELGEIEATLLQHEAVKAVVVMARQDGKGQNSLYAYVVAEQDIQT 1948
Query: 296 SEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQ----- 350
+E +++++S+ LP M+P+ FVF++ LP++++GKVD +L SA
Sbjct: 1949 AE-----LRTYLSATLPAYMVPSAFVFLEQLPLSANGKVDRKALPQPEDAAASAAVYVAP 2003
Query: 351 HDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHV------AHNLGID 404
+ E K + + + + L VE + HD+FF +GG+S+ A HV + + +
Sbjct: 2004 RNEWEAKLAAIWESV-------LGVEPIGVHDHFFELGGHSLKAMHVISLLQRSFQVDVP 2056
Query: 405 MRLIYNFPTPSKL 417
+++++ PT + L
Sbjct: 2057 LKVLFESPTIAGL 2069
|
Incorporates six amino acids (for tyrocidine A, Asn, Gln, Tyr, Val, Orn, and Leu) in their L-configuration into the peptide product. Brevibacillus parabrevis (taxid: 54914) |
| >sp|Q70LM4|LGRD_BREPA Linear gramicidin synthase subunit D OS=Brevibacillus parabrevis GN=lgrD PE=1 SV=1 | Back alignment and function description |
|---|
Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 131/465 (28%), Positives = 221/465 (47%), Gaps = 58/465 (12%)
Query: 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSI 62
D + + +L TS SF + E + A+L TLV IE +++L+ +Q
Sbjct: 638 DAFDIQPTSRVLQFTSFSFDVSVSEVVMALLAGATLV----IEDRESLLPGPELIQVLQE 693
Query: 63 SRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLY 122
R+TTV S++ VL AL + +P L L++ GE +++++ P N Y
Sbjct: 694 QRITTV-SMVSSVLAALP---DADLPD-LHTLIVGGEA---PSRELVARYAPGRQFFNCY 745
Query: 123 GSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDE----GEIY 178
G TE + T C+ + + + PIG PI+N + +++++ + P GE+Y
Sbjct: 746 GPTEATVCSTMMLCQ--------AGMNNPPIGRPIANATVYVLDAN-LNPVPVGVPGELY 796
Query: 179 AGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 238
GG L+ GY++ +L S + +RTGD R Q G+L FLG
Sbjct: 797 IGGKGLARGYWNRP--------ELTAESFIPHPFGTAGERLYRTGDLVRYRQDGNLEFLG 848
Query: 239 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVL--KEKKTSS 296
R D +KI G R+ L EIE+ +R HP V + V++ + + L A++V K + +
Sbjct: 849 RIDHQVKIRGYRIELGEIENAIRQHPAVQEAVVIAREEKAGDKRLAAYLVAAGKAQPPAE 908
Query: 297 EIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHD--AD 354
EI L ++ LP M+P V++D++P+T +GKVD +L +S + + A
Sbjct: 909 EIAL-----FLKETLPEYMVPAGVVWLDAIPLTVNGKVDRRALPVPDWGQLSTKREYVAP 963
Query: 355 ETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNL----GID--MRLI 408
T +++ I + L VE V D+FF +GG+S+ A L G+D +R++
Sbjct: 964 RTPTEEMVANI---WSQVLSVERVGSFDDFFELGGHSLLATQTVSRLKEAFGVDLPLRVL 1020
Query: 409 YNFPTPSKLE----IALLEKKGLCNL---DVSADANWKLNLEEDK 446
+ T +KL A +K GL + VS D + L+ + +
Sbjct: 1021 FECSTVNKLSEWIAAAGEDKSGLSRIPLVPVSRDRHLPLSFAQQR 1065
|
Activates the 13th to the 16th (Trp, D-Leu, Trp and Gly) amino acids in linear gramicidin and catalyzes the formation of the peptide bond between them. This enzyme is also responsible for the epimerization of the 14th (D-Leu) amino acid. It also catalyzes the NAD(P)H-dependent reduction of the C-terminal glycine residue of the N-formylated 16-mer peptide, that binds to the peptidyl carrier domain of the terminal module of this protein, to form a peptidyl-aldehyde intermediate that is released from the enzyme complex. Brevibacillus parabrevis (taxid: 54914) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q70LM5|LGRC_BREPA Linear gramicidin synthase subunit C OS=Brevibacillus parabrevis GN=lgrC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 115/414 (27%), Positives = 199/414 (48%), Gaps = 54/414 (13%)
Query: 17 TSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVL 76
TS SF + E + A+L LV IE ++ L+ + R+TTV S++ VL
Sbjct: 3252 TSFSFDVSVSEIVMALLAGAALV----IEDREVLLPGPELISVLQQKRITTV-SMVSSVL 3306
Query: 77 PALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDC 136
AL + +P L+ L++ GE +++++ N YG TE + T C
Sbjct: 3307 AALPA---ADLPD-LQTLIVGGEA---PSRELVARYADRRQFFNCYGPTEATVCSTMMLC 3359
Query: 137 KRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDE----GEIYAGGLCLSNGYFSES 192
+ +KS PIG P++N + +++++ KP GE+Y GG L+ GY++
Sbjct: 3360 N--------AGMKSAPIGRPLANATLYVLDANQ-KPVPVGVPGELYIGGKGLARGYWNRP 3410
Query: 193 TFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMA 252
++ + +RTGD R + G+L FLGR D +KI G R+
Sbjct: 3411 ELTAERFIA--------HPFGAKGERLYRTGDLVRYLPDGNLEFLGRIDTQVKIRGYRIE 3462
Query: 253 LEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLK-EKKTSSEIFLSSIKSWVSSKL 311
L EIE L HP + + V++ + + L A++V E + ++E + ++ L
Sbjct: 3463 LGEIESALSQHPAIQEAVVIAWEQR-----LAAYMVAAGEAQPAAE----ELARYLKETL 3513
Query: 312 PLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHD--ADETKASDLLQVIRKAF 369
P MIP FVFMD++P+T +GKVD +L A ++ + + A T +++ I +
Sbjct: 3514 PDYMIPAGFVFMDAIPLTVNGKVDRRALPAPDWGILATRQEYVAPRTPTEEMVANI---W 3570
Query: 370 GHALMVEEVLHHDNFFTMGGNSIAAAHV------AHNLGIDMRLIYNFPTPSKL 417
L VE++ HD+FF GG+S+ A A + + +R++++ PT + +
Sbjct: 3571 AQLLSVEKIGVHDDFFERGGHSLLATQAISRLRQAFGVELPLRMLFDHPTTAAI 3624
|
Activates the 7th to 12th amino acids (Val, D-Val, Trp, D-Leu, Xaa and D-Leu) in linear gramicidin and catalyzes the formation of the peptide bond between them. This enzyme is also responsible for the epimerization of the 8th (D-Val), the 10th (D-Leu) and 12th (D-Leu) amino acids. The 11th (Xaa) amino acid is Trp in linear gramicidin A; Phe in linear gramicidin B and Tyr in linear gramicidin C. Brevibacillus parabrevis (taxid: 54914) EC: 5 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q70LM6|LGRB_BREPA Linear gramicidin synthase subunit B OS=Brevibacillus parabrevis GN=lgrB PE=1 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 109/390 (27%), Positives = 186/390 (47%), Gaps = 51/390 (13%)
Query: 46 LKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSM 105
L N + + A ++ + TVPS + ++ +P S++++ L+GE LP ++
Sbjct: 3252 LADNALHLPSLPAAKEVTLINTVPSAAKELV------RMNAIPPSVRVVNLAGEPLPNTL 3305
Query: 106 WDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVP-IGLPISNCDIVL 164
+ L + NLYG +E + TY + K+ P IG P++N +
Sbjct: 3306 AQSLYALGHVQKVFNLYGPSEDTTYSTYVQVTK--------GAKTEPTIGRPLANTQAYV 3357
Query: 165 VESDTVKPDE----GEIYAGGLCLSNGYF-----SESTFMPSEYVKLHNNSICNCSVSCG 215
+++ ++P GE+Y GG L+ GY + F+P+ + H +
Sbjct: 3358 LDA-KLQPVPLGLPGELYLGGDGLARGYLKRPKMTAERFLPNPF---HPDPDARM----- 3408
Query: 216 SQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHK 275
+ TGD R + G L +LGR D +KI G R+ L E+E LR HP + + VV+ +
Sbjct: 3409 ----YSTGDLVRYLPDGQLEYLGRIDHQVKIRGYRIELGELEAVLRSHPQIKEAVVVAKE 3464
Query: 276 HQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVD 335
+ LVA+I K+ + L+ SW +KLP M+P+ FV++D++P+T +GK+D
Sbjct: 3465 DKLGEKRLVAYITTKDGECGDRAVLT---SWAKAKLPEFMVPSFFVWLDAMPLTPNGKID 3521
Query: 336 YASLSAST--SFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIA 393
L +A + A + L+ I + L +E+V HDNFF +GG+S+
Sbjct: 3522 RKQLPEPEWGQVASAAGYVAPRNQTEVLVASI---WADVLGIEQVGVHDNFFELGGHSLL 3578
Query: 394 AAHVAHNLG------IDMRLIYNFPTPSKL 417
A VA L + +R I+ PT ++L
Sbjct: 3579 ATRVASRLRETFAKEVPIRAIFERPTVAEL 3608
|
Activates the 3rd to 6th amino acids (Ala, D-Leu, Ala and D-Val) in linear gramicidin and catalyzes the formation of the peptide bond between them. This enzyme is also responsible for the epimerization of the 4th (D-Leu) and the 6th (D-Val) amino acids. Brevibacillus parabrevis (taxid: 54914) EC: 5 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 900 | ||||||
| 255566040 | 1144 | AMP dependent ligase, putative [Ricinus | 0.997 | 0.784 | 0.634 | 0.0 | |
| 224146120 | 1058 | predicted protein [Populus trichocarpa] | 0.987 | 0.840 | 0.626 | 0.0 | |
| 225463846 | 1175 | PREDICTED: acyl-CoA synthetase family me | 0.981 | 0.751 | 0.640 | 0.0 | |
| 449442457 | 1209 | PREDICTED: putative acyl-activating enzy | 0.986 | 0.734 | 0.567 | 0.0 | |
| 356506337 | 1153 | PREDICTED: acyl-CoA synthetase family me | 0.986 | 0.770 | 0.576 | 0.0 | |
| 357514737 | 1224 | Acetyl-coenzyme A synthetase [Medicago t | 0.991 | 0.728 | 0.542 | 0.0 | |
| 22327387 | 1040 | AMP-dependent synthetase and ligase fami | 0.985 | 0.852 | 0.555 | 0.0 | |
| 20466612 | 1040 | unknown protein [Arabidopsis thaliana] | 0.985 | 0.852 | 0.554 | 0.0 | |
| 297805142 | 1120 | hypothetical protein ARALYDRAFT_330218 [ | 0.977 | 0.785 | 0.557 | 0.0 | |
| 8885525 | 1175 | unnamed protein product [Arabidopsis tha | 0.98 | 0.750 | 0.550 | 0.0 |
| >gi|255566040|ref|XP_002524008.1| AMP dependent ligase, putative [Ricinus communis] gi|223536735|gb|EEF38376.1| AMP dependent ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1167 bits (3018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 582/917 (63%), Positives = 710/917 (77%), Gaps = 19/917 (2%)
Query: 1 MQDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAY 60
MQ+LYPL GEE+LLFKTSISFIDHLQEF A+LTA TLV+PP +LKK+ S++HFLQ Y
Sbjct: 230 MQELYPLLGEEVLLFKTSISFIDHLQEFFGAMLTATTLVIPPFSQLKKDPFSLLHFLQVY 289
Query: 61 SISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILN 120
SI+RL VPSL+R +LPALQSQ NM + SLKLLVLSGE+ PLS+WD++S L P SILN
Sbjct: 290 SINRLIAVPSLIRAILPALQSQCNMQIQRSLKLLVLSGEIFPLSLWDVLSDLLPRTSILN 349
Query: 121 LYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAG 180
LYG+TEVSGDCTYFDCKRLP ILE L SVPIG+PISNCD+VLV ++T D+GEI
Sbjct: 350 LYGTTEVSGDCTYFDCKRLPMILEKEALTSVPIGVPISNCDVVLV-AETATCDQGEICVS 408
Query: 181 GLCLSNGYFSESTFMPSEYVKLHNNSICNCSV-SCGSQTYFRTGDFARRIQSGDLVFLGR 239
G C+ +GY S MPS+ VKLH N ICNC V +CGS Y+RTGDFA+R+Q GDLVFLGR
Sbjct: 409 GPCVCSGYSSNLAVMPSDSVKLHKNLICNCVVDNCGSHVYYRTGDFAQRLQCGDLVFLGR 468
Query: 240 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIF 299
DRTIK+NG R+ALEE+E+TLRGHP VVD AVV+H+ QGEL++L AF++LKE + S + F
Sbjct: 469 TDRTIKVNGNRVALEEVENTLRGHPAVVDAAVVAHEGQGELMLLEAFLLLKENEKSGDPF 528
Query: 300 LSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKAS 359
SSI+SW+ K+ AMIPN FVF+ SLP +SSGKVDYA L S T+ Q + S
Sbjct: 529 RSSIRSWMVGKVSSAMIPNHFVFVKSLPKSSSGKVDYALLQTSALPTLHVQEKFGSSLTS 588
Query: 360 DLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNLGIDMRLIYNFPTPSKLEI 419
DL+ +++KAF ALMVE++ ++FF MGG+SI AA V+++LGIDMRL+Y +PTPSKL+
Sbjct: 589 DLMLIVKKAFCDALMVEDISDDEDFFVMGGSSITAAQVSYDLGIDMRLLYEYPTPSKLQS 648
Query: 420 ALLEKKGLCNLDVSADANWKLNLE---------------EDKEHQFHSGYSRTENHAVVS 464
ALL+KK LDV D +WK + + +E + + + + S
Sbjct: 649 ALLDKKESYKLDVKTDTSWKAKSKACRWNINYASPYLSLKSREWLLKNYHPNNDQNVAAS 708
Query: 465 KRLKVNSTKYFKPELHHHKDGLPWNLSSVPMSCSFSRCNKVMHEEKIRGNDLCGVNWSLE 524
KR KV+ ++ + DG W + +P+SCSFSRCNKVM+E ++ ++WS+E
Sbjct: 709 KRFKVDLDRHISSKHVSLSDGYSWP-ALIPISCSFSRCNKVMYERAYSLSNTHQLSWSVE 767
Query: 525 VPRN-KRGFIQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEI 583
VPRN K +QELWK+HM SCVDASPLVV KD D++LF+GSH+ KFIC DAK SV WE+
Sbjct: 768 VPRNGKCSSLQELWKIHMVSCVDASPLVVFKDQDVFLFIGSHAQKFICIDAKSGSVQWEV 827
Query: 584 KLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL 643
KL+GRIECSAA++AD+SQVVVGCY+GKIYFLD++ G+I WTFQTCGEVKCQPVVD RQ+
Sbjct: 828 KLQGRIECSAAIVADYSQVVVGCYEGKIYFLDFVNGNICWTFQTCGEVKCQPVVDVHRQI 887
Query: 644 IWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKAL 703
IWCGSHD+ LYALD+RNY C+YKL CGGS+FGSPAIDEVH LYVASTSGR+TAISVKAL
Sbjct: 888 IWCGSHDNYLYALDYRNYCCIYKLLCGGSVFGSPAIDEVHGRLYVASTSGRVTAISVKAL 947
Query: 704 PFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPC 763
PFHTLW ELEVP F SL + S N +VICCLVDG+VVALDSSGSI+WRCRTGGP+FAG C
Sbjct: 948 PFHTLWQRELEVPVFGSLSVCSPNGYVICCLVDGNVVALDSSGSIVWRCRTGGPVFAGAC 1007
Query: 764 TSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDR 823
TS+ LPSQVLICSRNGSIYSFE E G+LLWEY+VGDPIT+SAY+DEHLQ S DR
Sbjct: 1008 TSYVLPSQVLICSRNGSIYSFEMEKGDLLWEYNVGDPITSSAYVDEHLQPVSASSPVSDR 1067
Query: 824 LVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCR 883
LVC+C +SGSIH+LR++LDV GK NQS +VQE A+LEL GDIFSSPVMIGGR+FVGCR
Sbjct: 1068 LVCVCATSGSIHLLRISLDVVGKPNQSSKSVVQEIARLELPGDIFSSPVMIGGRIFVGCR 1127
Query: 884 DDYIYCIALETQHLEEE 900
DDY++CI+LE+ EE
Sbjct: 1128 DDYVHCISLESPSSVEE 1144
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224146120|ref|XP_002325887.1| predicted protein [Populus trichocarpa] gi|222862762|gb|EEF00269.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1165 bits (3014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 576/919 (62%), Positives = 703/919 (76%), Gaps = 30/919 (3%)
Query: 1 MQDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAY 60
MQ+LYPLHGEE LLFKTSISFIDHLQEFLSA+LT CTLV+PP ELK+ S+++ LQAY
Sbjct: 133 MQELYPLHGEEALLFKTSISFIDHLQEFLSAMLTTCTLVIPPFHELKEYPFSLVNVLQAY 192
Query: 61 SISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILN 120
SI+RLT VPSLMR +LP LQ QH+M + +SLKLLVLSGEV LS+WD +S L P +ILN
Sbjct: 193 SINRLTAVPSLMRAILPVLQRQHSMQIQTSLKLLVLSGEVFSLSLWDALSTLLPRTTILN 252
Query: 121 LYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV-ESDTVKPDEGEIYA 179
LYG+TEVSGDCTYFDCKRLP+ILE L S+PIGLPISNCD+ L+ ESDT +EGEIY
Sbjct: 253 LYGTTEVSGDCTYFDCKRLPAILETEALTSIPIGLPISNCDVALICESDT--SNEGEIYV 310
Query: 180 GGLCLSNGYFSESTFMPSEYVKLHNNSICNCSV-SCGSQTYFRTGDFARRIQSGDLVFLG 238
GGLC+SNGY+SEST H ++ICN SV + G Q Y+RTGDFA+R+Q+GDLVFLG
Sbjct: 311 GGLCVSNGYYSESTVTSFISANPHMDNICNSSVDNWGCQAYYRTGDFAQRLQNGDLVFLG 370
Query: 239 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEI 298
R DRT+KINGQR+ LEEIE+TLRGHPDV D AV+S + GEL+ L A ++ KE++ S +
Sbjct: 371 RTDRTVKINGQRIVLEEIENTLRGHPDVADAAVISREGPGELLFLDAILLFKEREKSEDF 430
Query: 299 FL-SSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETK 357
F+ SSI+ W+ K+PLAM+PNRFV +SLPM+S+GKVDYA L+ S + Q D
Sbjct: 431 FVRSSIRKWMVDKVPLAMVPNRFVITESLPMSSTGKVDYALLARSKFLNLHVQ-DEIGNA 489
Query: 358 ASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNLGIDMRLIYNFPTPSKL 417
SDLLQ+I+KAF LMVEEV D+FF MGGNSI+AAHV++NLGI+MRL+YNFPTPSKL
Sbjct: 490 TSDLLQIIKKAFCDGLMVEEVSCDDDFFAMGGNSISAAHVSYNLGINMRLLYNFPTPSKL 549
Query: 418 EIALLEKKGLCNLDVSADANWKLNLEEDK----------------------EHQFHSGYS 455
ALLEKK ++V DAN +L ++D + + +
Sbjct: 550 HAALLEKKESYCMEVRVDANSQLKPKKDSLVSDMAYSPNPTSPVVPGLKSMKQPSKNPHQ 609
Query: 456 RTENHAVVSKRLKVNSTKYFKPELHHHKDGLPWNLSSVPMSCSFSRCNKVMHEEKIRGND 515
++H V SKR K + DG P + SS+ M CSFSRCN V+++E R
Sbjct: 610 NNDDHTVASKRFKEDLDISISSACVKPSDGQPLS-SSISMLCSFSRCNTVIYDENCRSRK 668
Query: 516 LCGVNWSLEVPRNKRGF-IQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADA 574
+N +VPRN +G + ELWKV+MESCVDASPLVV+K D+YLF+GSHSHKF+C +A
Sbjct: 669 SHQINRLAKVPRNGKGSSMHELWKVYMESCVDASPLVVVKQQDVYLFIGSHSHKFVCVNA 728
Query: 575 KRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 634
S+ WE+KLEGRIE SAA++ DFSQVVVGCY GKIYFLD+L G I WTFQTCGEVKCQ
Sbjct: 729 LSGSIQWEVKLEGRIESSAAIVGDFSQVVVGCYSGKIYFLDFLDGSICWTFQTCGEVKCQ 788
Query: 635 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGR 694
PVVD RQLIWCGSHDHNLYALD+RN+ C+YKL C GSI+GSPAIDEVH+ LYVASTSG
Sbjct: 789 PVVDIHRQLIWCGSHDHNLYALDYRNHCCIYKLSCDGSIYGSPAIDEVHNTLYVASTSGH 848
Query: 695 LTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRT 754
+TAIS+KALPF+TLW HEL+VP F SL + ++ +VICCLVDG++V LD GSIIWRC T
Sbjct: 849 VTAISIKALPFNTLWEHELKVPVFGSLSLCPSSGNVICCLVDGNIVVLDFCGSIIWRCGT 908
Query: 755 GGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLK 814
GGP+FAG C S LPSQVLICSRNG +YSFE E+G+LLWEY+VGDPITASAY+DEHLQL
Sbjct: 909 GGPVFAGACISCVLPSQVLICSRNGRVYSFEMETGDLLWEYNVGDPITASAYVDEHLQLL 968
Query: 815 LESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMI 874
+ CL DRLVC+CTSSG +H+L++NLD +GK+NQ ++VQEFA+LEL GDIFSSPVMI
Sbjct: 969 SDPCLLSDRLVCVCTSSGRVHLLQINLDDSGKQNQPGLNIVQEFARLELPGDIFSSPVMI 1028
Query: 875 GGRVFVGCRDDYIYCIALE 893
GGR+FVGCRDDY++CI++E
Sbjct: 1029 GGRIFVGCRDDYVHCISVE 1047
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225463846|ref|XP_002265371.1| PREDICTED: acyl-CoA synthetase family member 4 [Vitis vinifera] gi|296088768|emb|CBI38218.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1161 bits (3003), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/907 (64%), Positives = 705/907 (77%), Gaps = 24/907 (2%)
Query: 1 MQDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAY 60
MQ+ YPL GEE+LLFKTSISF+DHLQEFL AIL+ACTLV+PP ELK+N +I +L+AY
Sbjct: 276 MQEFYPLLGEEILLFKTSISFVDHLQEFLGAILSACTLVIPPFNELKQNPFHVIDYLKAY 335
Query: 61 SISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILN 120
S++R+T VPSLMRV++PALQS+ NM V +SLK LVLSGE+LPLS+W+ +S L P SILN
Sbjct: 336 SVTRMTAVPSLMRVIIPALQSEENMQVQNSLKFLVLSGEILPLSLWNTLSSLLPQTSILN 395
Query: 121 LYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV-ESDTVKPDEGEIYA 179
LYGSTEVSGDCTYFDC+RLP ILE +L SVPIG+PISNC+++LV ESDT +EGEI
Sbjct: 396 LYGSTEVSGDCTYFDCRRLPRILESDSLSSVPIGIPISNCNVMLVGESDT--SNEGEICV 453
Query: 180 GGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCG-SQTYFRTGDFARRIQSGDLVFLG 238
GLC++ GYF + MP +Y L + S+CNCS++ SQ YFRTGDFARR+QSGDLVFLG
Sbjct: 454 NGLCVNIGYFPDPNVMPLDYSNLSHGSLCNCSINDNESQLYFRTGDFARRLQSGDLVFLG 513
Query: 239 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEI 298
RKDRT+KINGQR+ALEEIE+ LRGHPDVVD AV+ K QGEL +L AFI+LK S E+
Sbjct: 514 RKDRTVKINGQRIALEEIENALRGHPDVVDAAVIFRKGQGELELLEAFIILKRTNESDEV 573
Query: 299 FLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADET-- 356
S I W+ KLPL M+PN F F S PM+++GKVDYASL+ S IS H DE
Sbjct: 574 LRSCIGCWMVEKLPLVMVPNNFFFTKSFPMSATGKVDYASLAGS----ISMAHIQDEIGG 629
Query: 357 -KASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNLGIDMRLIYNFPTPS 415
K++DLL+VI+KAF AL VE+V + D+FF MGG+SIAAA+V++NLGI+MRLIYNFP+PS
Sbjct: 630 IKSNDLLEVIKKAFCDALSVEKVCNDDDFFMMGGDSIAAAYVSYNLGINMRLIYNFPSPS 689
Query: 416 KLEIALLEKKGLCNLDVSADANWKL-----NLEEDKEHQFHSG--YSRTENHAVVSKRLK 468
KL++ALL+K+G ++DV D L +L K S + + + V SK LK
Sbjct: 690 KLQVALLKKEGSSSIDVGIDDIGSLKSDTCDLYSSKPCGTSSKPVFENNDKYPVTSKCLK 749
Query: 469 VNSTKYFKPELHHHKDGLPWNLSSVPMSCSFSRCNKVMHEEKIRGNDLCGVNWSLEVPRN 528
V+S Y + DG PWN +SVPM CSFSRCNKVM E + + ++C WS+E PRN
Sbjct: 750 VDSNTYATSKSVIPCDGCPWNSNSVPMLCSFSRCNKVMCEVESKMKNICHTTWSIEFPRN 809
Query: 529 KRGFIQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR 588
K GF++ELWKVHMESCVDAS +VV KD DIYL +GSHSHKF+C +AK + W I+LEGR
Sbjct: 810 KSGFMRELWKVHMESCVDASAIVVFKDWDIYLLIGSHSHKFVCVNAKSGFIRWGIELEGR 869
Query: 589 IECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGS 648
IECSAA+L DFSQVVVGCY G IYFLD+ G+I WTFQT GEVK QPV+D R L+WCGS
Sbjct: 870 IECSAAILDDFSQVVVGCYSGIIYFLDFSNGNICWTFQTRGEVKSQPVIDKRRNLVWCGS 929
Query: 649 HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTL 708
HDH LYAL++RN+ CVYKLPCGGSIFGSPAIDE D+LYVASTSGR+TAIS+K PF TL
Sbjct: 930 HDHYLYALNYRNHCCVYKLPCGGSIFGSPAIDEARDILYVASTSGRVTAISLKVQPFCTL 989
Query: 709 WLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFAL 768
WLHEL VP F SL ++S N +VICCLVDGHV+A DSSGSI+W+ +TGGPIFAG C S AL
Sbjct: 990 WLHELNVPVFGSLSVSS-NGNVICCLVDGHVLAFDSSGSIVWKGKTGGPIFAGACISHAL 1048
Query: 769 PSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCIC 828
PSQ LICSRNGS+YSFE E G+LLWE SVGDPITA+AY+DE+L+L +S LS DRLVCIC
Sbjct: 1049 PSQALICSRNGSVYSFELEGGDLLWECSVGDPITAAAYVDENLKLVSDSSLSSDRLVCIC 1108
Query: 829 TSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIY 888
SSGSIH+L+++ D TG+ H EFA+LELQG+IFSSPVMIGGR+FVGCRDDY++
Sbjct: 1109 ASSGSIHLLKISWDTTGRV-----HRPTEFARLELQGEIFSSPVMIGGRIFVGCRDDYVH 1163
Query: 889 CIALETQ 895
CIA+E Q
Sbjct: 1164 CIAVEAQ 1170
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442457|ref|XP_004138998.1| PREDICTED: putative acyl-activating enzyme 19-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1053 bits (2724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/937 (56%), Positives = 684/937 (72%), Gaps = 49/937 (5%)
Query: 1 MQDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAY 60
MQ+ +P EELLLFKTSISFIDH+QEFLSAILTA LV PP+ ELK+NL S+++F+QAY
Sbjct: 271 MQENFPSTREELLLFKTSISFIDHIQEFLSAILTASVLVTPPMKELKENLCSVVNFIQAY 330
Query: 61 SISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILN 120
SIS+LT VPSLMR +LPALQ V SL+LL+LSGE LP+ +WD + KL P +ILN
Sbjct: 331 SISKLTAVPSLMRTLLPALQ--RFCGVKCSLRLLILSGETLPILLWDALVKLLPETTILN 388
Query: 121 LYGSTE--------VSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKP 172
LYGSTE VSGDCTYFDCK++P ILE +K+VPIG+PIS+CD+V+V D
Sbjct: 389 LYGSTEYLNFLNKKVSGDCTYFDCKKMPMILETDAIKTVPIGVPISHCDVVVV-GDNDAL 447
Query: 173 DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCS--VSCGSQTYFRTGDFARRIQ 230
+ GE+ GG C+ +GY+S+S F+P + +K + I S V+C SQ Y RTGDF ++++
Sbjct: 448 NLGELCVGGPCVCSGYYSDSVFLPLDGIKFSQDFIHEGSFNVTC-SQIYIRTGDFVQQLR 506
Query: 231 SGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLK 290
SGDLVFLGRKDR IK+NGQR++LEEIE LR HPDVVD AVVS K EL LVAF+VLK
Sbjct: 507 SGDLVFLGRKDRIIKVNGQRISLEEIEDALREHPDVVDAAVVSRKSDWELEYLVAFLVLK 566
Query: 291 EKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQ 350
+ + SE+F S+++SW+ K+PLAMIPN F F DS+PMT+SGKVDY L+ S
Sbjct: 567 DNE-KSEVFRSTVRSWMVEKVPLAMIPNSFFFTDSIPMTTSGKVDYEILTHSRPLWEQVH 625
Query: 351 HDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNLGIDMRLIYN 410
DET A++ +Q+I+KAF ALMVEE+ D+FFTMGGNSI AAHV+H LGIDMR +Y+
Sbjct: 626 ESIDETWANEFIQIIKKAFSDALMVEEISSGDDFFTMGGNSITAAHVSHRLGIDMRWLYH 685
Query: 411 FPTPSKLEIALLEKKGLCNLDVSADANWKLNLEED------------------------- 445
+P+P+KL +LEKKGL + ++ DA+ + NL+ D
Sbjct: 686 YPSPAKLLTVILEKKGLDIIRINEDADSRRNLKTDRWNKYSLDDSEFLNHFDLKEGGSSG 745
Query: 446 --KEHQFHSGYSRT----ENHAVVSKRLKVNSTKYFKPELHHHKDGLPWNLSSVPMSCSF 499
K+ Q + +SR N++++SK K S E G W+ +SC+F
Sbjct: 746 KRKQVQPNGDFSRAVVPRNNNSLLSKHYKAVSDCSINLENISQVGGHLWHSPLTSVSCAF 805
Query: 500 SRCNKVMHEEKIRGNDLCGVNWSLEVPRNKRGFIQELWKVHMESCVDASPLVVLKDSDIY 559
SRCNKV++E K G++ ++ PR + G +++LW+VHMESCVDASPL+V K +IY
Sbjct: 806 SRCNKVVYERKYIGDNKRAGTLLVKSPRGENGSMKKLWQVHMESCVDASPLLVFKHPNIY 865
Query: 560 LFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTG 619
LF+GSHSHKF+C DAK +S+ WEI+LEGRIECSAA++ DFSQVVVGCYKG IYFL++ TG
Sbjct: 866 LFIGSHSHKFVCVDAKNASLRWEIRLEGRIECSAAIVGDFSQVVVGCYKGNIYFLEFSTG 925
Query: 620 DIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAI 679
I WTFQT GEVK QPVVD R LIWCGS+DHNLYALD+ + CVYKLPCGGS++GSPAI
Sbjct: 926 VILWTFQTYGEVKSQPVVDPDRNLIWCGSYDHNLYALDYVRHSCVYKLPCGGSLYGSPAI 985
Query: 680 DEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRH--VICCLVDG 737
D V LYVAST GR++A+ +K PF++LW ++LE P F SL I R+ VICCLVDG
Sbjct: 986 DGVQHRLYVASTGGRISALLIKDFPFNSLWHYDLEAPVFGSLAIDPVTRNGTVICCLVDG 1045
Query: 738 HVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSV 797
HVVALDSSGS+ W+ +TGGPIFAGPC S ++PSQVLICSRNGSIYSFE ESG+L+WEY++
Sbjct: 1046 HVVALDSSGSVSWKSKTGGPIFAGPCISTSIPSQVLICSRNGSIYSFELESGDLVWEYNI 1105
Query: 798 GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQE 857
G+PITASA +DEHLQL E+ +S DRL+C+C+S+GSIH+LRV L+ T +E S++ V+E
Sbjct: 1106 GNPITASACVDEHLQLVPETSISSDRLICVCSSAGSIHLLRVKLNAT-QEGNSQNTNVEE 1164
Query: 858 FAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALET 894
F +L+L+GDIFSS VMIGG VFVGCRDDY++C+ ++
Sbjct: 1165 FGRLDLEGDIFSSSVMIGGLVFVGCRDDYVHCVGIDN 1201
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356506337|ref|XP_003521941.1| PREDICTED: acyl-CoA synthetase family member 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1041 bits (2691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/910 (57%), Positives = 665/910 (73%), Gaps = 22/910 (2%)
Query: 1 MQDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAY 60
MQ +YPL+G+ELLLF +S+SFIDHLQEFLSAILTAC LV+PP ELK+N+ SII FLQAY
Sbjct: 254 MQGMYPLNGQELLLFNSSVSFIDHLQEFLSAILTACVLVIPPFNELKENIYSIIDFLQAY 313
Query: 61 SISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILN 120
++RLTTVPSLMR +LP LQ+ NM V +SLKLLVLSGE PL++W+++S + P SILN
Sbjct: 314 FVNRLTTVPSLMRTILPGLQTHANMLVENSLKLLVLSGETFPLTLWEMLSTILPKTSILN 373
Query: 121 LYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAG 180
LYGSTEVSGDCTYFDCKR+P IL+ L SVPIGLPI+NCD++++ ++ +EGE+Y G
Sbjct: 374 LYGSTEVSGDCTYFDCKRMPLILKEEKLFSVPIGLPITNCDVMMLLNENGASNEGELYVG 433
Query: 181 GLCLSNGYFSE-STFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 239
G C+ Y++E + M + KL S +C Q YFRTGD +++ SGD VFLGR
Sbjct: 434 GSCIFRDYYNEPNNIMSDAFAKLPR------SYACQGQLYFRTGDLVKQLPSGDFVFLGR 487
Query: 240 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIF 299
KDR IKINGQR+ALEE+E LR HP + D AVV ++ ELV+L AFI+LK+K+ S E+
Sbjct: 488 KDRIIKINGQRIALEEVEELLREHPYINDAAVVCRNNEAELVLLEAFIILKKKERSGELL 547
Query: 300 LSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKAS 359
+ +I+SW+ +KLP ++PNRF FM+S P++ SGKV+Y L S T + + S
Sbjct: 548 IPAIRSWMINKLPSIVLPNRFFFMESFPVSPSGKVNYELLVGSALLTKNVKDKVSNIDCS 607
Query: 360 DLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNLGIDMRLIYNFPTPSKLEI 419
+LLQ+I+KAF ALMVE+V + D+FF MGGNS++AAHVA+ LGIDM+ +Y +PTP KL +
Sbjct: 608 NLLQLIKKAFHDALMVEKVCNDDDFFMMGGNSLSAAHVAYGLGIDMKFLYYYPTPFKLCM 667
Query: 420 ALLEKKGLCNLDVSADANWKLNLEEDKEHQFHSGYSRTENHAVVSKRLKVNSTKYFKPEL 479
ALL+KKG C+L D ++N + H + EN + R+ + +
Sbjct: 668 ALLQKKGSCSLHNRLDCCRQINTDRQDNH---ISMNHAENSRPLESRMILKDNDHDSFPS 724
Query: 480 HHHKDGL----PWNLSSVP------MSCSFSRCNKVMHEEKIRGNDLCGVNWSLEVPRNK 529
K GL W S P +S SFSRCNKV+++ K D WS VPR
Sbjct: 725 KRLKRGLIDVTSWGDESFPWYSPSLLSFSFSRCNKVLYKGKQAVIDTNQTTWSANVPRGS 784
Query: 530 RGFIQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRI 589
RG + WKV+MESCVDASP++V K +DIYLF+GSHSHKF+C +A+ SV WEIKL+GRI
Sbjct: 785 RGHMNNFWKVYMESCVDASPILVFKGTDIYLFIGSHSHKFLCINARSGSVQWEIKLKGRI 844
Query: 590 ECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH 649
EC+AA+++DFSQVVVGCY GKI+FLD+L G I W FQT GEVK QPVVD RQLIWCGSH
Sbjct: 845 ECTAAIVSDFSQVVVGCYMGKIHFLDFLNGRICWIFQTSGEVKAQPVVDTCRQLIWCGSH 904
Query: 650 DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLW 709
DHNLYALD++ + CVYKL CGGSI+GSPAIDEV +LYVAST GR+TAIS+ A PF LW
Sbjct: 905 DHNLYALDYKKHCCVYKLSCGGSIYGSPAIDEVRGLLYVASTGGRITAISISASPFTILW 964
Query: 710 LHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALP 769
LHELEVP F SL + + N VICCLVDGHV+ALD +GSI+W+ T GPIFAGPC LP
Sbjct: 965 LHELEVPVFGSLAV-AHNGTVICCLVDGHVLALDPNGSIVWKKTTDGPIFAGPCIPSVLP 1023
Query: 770 SQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICT 829
+VL+CSR+G +YSF+ E G+LLWEY+VGDPITASAY+DEHLQL+ ++ S DRLVCIC+
Sbjct: 1024 HEVLVCSRSGGVYSFKLEKGDLLWEYNVGDPITASAYVDEHLQLESDASHSSDRLVCICS 1083
Query: 830 SSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYC 889
SSG IH+LRVN++ + NQ + VQEFAKL L GD+FSSP+MIGGR+FVGCRDDY++C
Sbjct: 1084 SSGGIHLLRVNMNHSEDANQQRRD-VQEFAKLNLPGDVFSSPLMIGGRIFVGCRDDYLHC 1142
Query: 890 IALETQHLEE 899
IALE E
Sbjct: 1143 IALEIPKQHE 1152
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357514737|ref|XP_003627657.1| Acetyl-coenzyme A synthetase [Medicago truncatula] gi|355521679|gb|AET02133.1| Acetyl-coenzyme A synthetase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1033 bits (2671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/944 (54%), Positives = 665/944 (70%), Gaps = 52/944 (5%)
Query: 1 MQDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAY 60
MQ +YPL G+ELLLFK+SISFIDHLQEFLS+ILTAC L++PP ELK+N+ SII FLQAY
Sbjct: 283 MQGMYPLTGQELLLFKSSISFIDHLQEFLSSILTACVLIIPPFSELKENVYSIIDFLQAY 342
Query: 61 SISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILN 120
S++RLT VPSL+R +LP LQ+ ++ + SSLKLLVLSGE P ++W+ +S + P SILN
Sbjct: 343 SVNRLTAVPSLIRTILPVLQTHTDLRIESSLKLLVLSGETFPYTLWETLSTILPKTSILN 402
Query: 121 LYGSTE-------------------------------VSGDCTYFDCKRLPSILEMSTLK 149
LYGSTE VSGDCTYFDCKR+P +L+ L
Sbjct: 403 LYGSTEFLSYCTLLFFSIIIIGYSSLTILFPIHFLTKVSGDCTYFDCKRIPLVLKEEMLT 462
Query: 150 SVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICN 209
SVPIGLPI+NC++VL+ + P+EGE+Y GG C+ GY+ ES M +VKL N C
Sbjct: 463 SVPIGLPITNCNVVLI-GENGAPNEGELYVGGSCIFRGYYDESDIMSEGFVKLPQNYGCE 521
Query: 210 CSVSC-GSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVD 268
SV S+ YFRTGD +++ SGD +FLGRKDR +K++GQR++LEE+E+ LR HP++ D
Sbjct: 522 NSVDVFQSELYFRTGDLVKQLPSGDFIFLGRKDRIVKVHGQRISLEEVENLLREHPNIND 581
Query: 269 TAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPM 328
AVV Q ELV + AFI+LK+K+ E+ + +I+SW+ +KLP +PNRF+F +S P+
Sbjct: 582 AAVVCRNLQAELVFIEAFIILKDKQQLGELLVPAIRSWMINKLPSVWLPNRFIFTESFPI 641
Query: 329 TSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMG 388
+SSGKV+Y L +S T S + S+LLQ+I+K F AL+VE++ + D+FF MG
Sbjct: 642 SSSGKVNYELLVSSALLTKSVKDKVGNISCSNLLQLIKKIFHDALLVEKLCNDDDFFIMG 701
Query: 389 GNSIAAAHVAHNLGIDMRLIYNFPTPSKLEIALLEKKGLCNLDVSADANWKLNLEEDKEH 448
GNS++AAHVAHNLGID+R +Y +P+P KL +ALL K+G C+L D +L+ + + +
Sbjct: 702 GNSLSAAHVAHNLGIDLRFLYYYPSPFKLCMALLHKRGSCSLHNRLDNCLQLD-TDIQNN 760
Query: 449 QFHSGYSRT----ENHAVVS---------KRLKVNSTKYFKPELHHHKDGLPWNLSSVPM 495
F S + + E+ + KRLK ST + PW+ ++
Sbjct: 761 DFSSNLTESSFPLESRMIPKDKVDVLFPFKRLKRGSTDVVT---SGGDEPFPWHSLAIFS 817
Query: 496 SCSFSRCNKVMHEEKIRGNDLCGVNWSLEVPRNKRGFIQELWKVHMESCVDASPLVVLKD 555
S SFSRCNKV+++ + D WS VPR RG ++ WKV+MESCVDASP+VV K
Sbjct: 818 SSSFSRCNKVLYKGQTSVMDTHQTTWSSNVPRGSRGHMKSFWKVYMESCVDASPMVVSKG 877
Query: 556 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLD 615
SD+YLF+GSHSHKF+C + + S+ WEIKLEGRIEC+AA+++DFSQVVVGCY GKIYFLD
Sbjct: 878 SDLYLFIGSHSHKFLCINVRSGSMQWEIKLEGRIECTAAIVSDFSQVVVGCYMGKIYFLD 937
Query: 616 YLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFG 675
+ G I W FQT GEVK QP+VD RQLIWCGS+DH LYALD++N+ CVYKL CGGSI+G
Sbjct: 938 FWNGHICWIFQTSGEVKSQPIVDTCRQLIWCGSYDHTLYALDYKNHCCVYKLSCGGSIYG 997
Query: 676 SPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLV 735
SPAIDEV +LYVAST GR+TA+S+ PF LWL ELEVP F SL +T N VICCLV
Sbjct: 998 SPAIDEVRGLLYVASTGGRITAVSISGSPFSILWLLELEVPVFGSLAVT-KNGTVICCLV 1056
Query: 736 DGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEY 795
DGHV+ALD +GSI+W+ TGGPIFAGPC P +VL+C RNGS+YSF+ E G+L+WEY
Sbjct: 1057 DGHVLALDPNGSIVWKKTTGGPIFAGPCIPSVNPHEVLVCCRNGSVYSFKLEKGDLIWEY 1116
Query: 796 SVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMV 855
+VGDPITASAY+DEHLQL+ ++ + DRL+C C+SSG IHILRVN + + N K V
Sbjct: 1117 NVGDPITASAYVDEHLQLEADASHTSDRLICACSSSGGIHILRVNTNFSENTNHLKSE-V 1175
Query: 856 QEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALETQHLEE 899
+EFA+L+L GDIFSSP+MIGGR+FVGCRDDY+YC+ALE E
Sbjct: 1176 EEFARLKLPGDIFSSPLMIGGRIFVGCRDDYLYCVALEIPKQHE 1219
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22327387|ref|NP_198442.2| AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] gi|378548266|sp|F4K1G2.1|AEE19_ARATH RecName: Full=Putative acyl-activating enzyme 19 gi|332006646|gb|AED94029.1| AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1015 bits (2625), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/912 (55%), Positives = 643/912 (70%), Gaps = 25/912 (2%)
Query: 1 MQDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAY 60
MQ+LYP+ GE+ FKTS+ FIDH+QEFL AIL++ LV+PP LK+N+ISII FL+ Y
Sbjct: 134 MQELYPVVGEQRFAFKTSVGFIDHIQEFLGAILSSTALVIPPFTLLKENMISIIDFLEEY 193
Query: 61 SISRLTTVPSLMRVVLPALQSQ-HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISIL 119
SISRL VPS++R +LP LQ + HN + S LKL+VLSGE P+S+WD + L P L
Sbjct: 194 SISRLLAVPSMIRAILPTLQHRGHNNKLQSCLKLVVLSGEPFPVSLWDSLHSLLPETCFL 253
Query: 120 NLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEGEIYA 179
NLYGSTEVSGDCTYFDC LP +L+ + SVPIG ISNC +VL+ D KP EGEI
Sbjct: 254 NLYGSTEVSGDCTYFDCSELPRLLKTEEIGSVPIGKSISNCKVVLL-GDEDKPYEGEICV 312
Query: 180 GGLCLSNGYFSESTFMPSEYVKLHNNSICN-CSVSCGSQTYFRTGDFARRIQSGDLVFLG 238
GLCLS GY S+ YVKLHNNS+CN + CGSQ Y+RTGD+ R++ SGDL+F+G
Sbjct: 313 SGLCLSQGYM-HSSIESEGYVKLHNNSLCNHLTNDCGSQLYYRTGDYGRQLSSGDLIFIG 371
Query: 239 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEI 298
R+DRT+K+NG+RMALEEIE TL +PD+ + V+ + + EL L AF+VL ++ SS+
Sbjct: 372 RRDRTVKLNGKRMALEEIETTLELNPDIAEAVVLLSRDETELASLKAFVVLNKESNSSDG 431
Query: 299 FLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKA 358
+ SI++W+ KLP MIPN FV ++ LP+TSSGKVDY +L+ T AQ
Sbjct: 432 IIFSIRNWMGGKLPPVMIPNHFVLVEKLPLTSSGKVDYEALARLKCPTTGAQDMMQSNGT 491
Query: 359 SDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNLGIDMRLIYNFPTPSKLE 418
+ LLQ I+KA AL+V+EV D+FF +GG+S+AAAH++H+LGIDMRLIY F +PS+L
Sbjct: 492 NSLLQNIKKAVCDALLVKEVSDDDDFFAIGGDSLAAAHLSHSLGIDMRLIYQFRSPSRLL 551
Query: 419 IALLEKKGLCNLDVSADANWKLNLEEDKEH---------QFHSGYSRTENHAVVS----- 464
I L EK+G D+ + KL+ + + ++ HSG + + +
Sbjct: 552 IYLSEKEGKLREDMQHNTTQKLDHKIESQNGNGLVSRTVPLHSGVTSGPTPSKLQCEKNN 611
Query: 465 --KRLKVNSTKYFKPELHHHKDGLPWNLSSVPMSCSFSRCNKVMHEEKIRGNDLCGVNWS 522
KRLK++ K+ + +K W+ + C+FSRCNKV E + WS
Sbjct: 612 SPKRLKIDYEKFSPKRMKENK---LWDSGFSQIQCAFSRCNKVHSPESCSNEEANREYWS 668
Query: 523 LEVPRNKRGFIQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWE 582
LE+PRN+ +QE+WKVHMESCVDASPLVVLKDS YLF+GSHS KF C DAK S+ WE
Sbjct: 669 LEIPRNQMVSMQEIWKVHMESCVDASPLVVLKDSKTYLFIGSHSRKFSCIDAKSGSMYWE 728
Query: 583 IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQ 642
LEGRIE SA V+ DFSQVV+GCYKGK+YFLD+ TG + W FQ CGE+KCQPVVD Q
Sbjct: 729 TILEGRIEGSAMVVGDFSQVVIGCYKGKLYFLDFSTGSLCWKFQACGEIKCQPVVDTSSQ 788
Query: 643 LIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKA 702
LIWCGSHDH LYALD+R+ CVYKL CGGSIF SPAIDE H LYVASTSGR+ A+S+K
Sbjct: 789 LIWCGSHDHTLYALDYRSQCCVYKLQCGGSIFASPAIDEGHSSLYVASTSGRVIAVSIKD 848
Query: 703 LPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGP 762
PFHTLWL ELE P F SLCIT + ++VICCLVDG V+A+ SG+IIWR RTGGPIFAGP
Sbjct: 849 SPFHTLWLFELEAPIFGSLCITPSTQNVICCLVDGQVIAMSPSGTIIWRYRTGGPIFAGP 908
Query: 763 CTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSID 822
C S LPSQVL+C RNG +YS E ESG L+WE ++GDPITASAYIDE+L + L+ D
Sbjct: 909 CMSHVLPSQVLVCCRNGCVYSLEPESGCLVWEDNIGDPITASAYIDENLHFESHELLASD 968
Query: 823 RLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGC 882
RLV +C+SSG +H+LRV + ++ S D V E ++ELQ DIFSSPVMIGGR+FVGC
Sbjct: 969 RLVTVCSSSGRVHVLRVRPSILSRD--SHDSKVGEITRMELQADIFSSPVMIGGRIFVGC 1026
Query: 883 RDDYIYCIALET 894
RDDY++C++LE+
Sbjct: 1027 RDDYVHCLSLES 1038
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|20466612|gb|AAM20623.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1014 bits (2621), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/912 (55%), Positives = 643/912 (70%), Gaps = 25/912 (2%)
Query: 1 MQDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAY 60
MQ+LYP+ GE+ FKTS+ FIDH+QEFL AIL++ LV+PP LK+N+ISII FL+ Y
Sbjct: 134 MQELYPVVGEQRFAFKTSVGFIDHIQEFLGAILSSTALVIPPFTLLKENMISIIDFLEEY 193
Query: 61 SISRLTTVPSLMRVVLPALQSQ-HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISIL 119
SISRL VPS++R +LP LQ + HN + S LKL+VLSGE P+S+WD + L P L
Sbjct: 194 SISRLLAVPSMIRAILPTLQHRGHNNKLQSCLKLVVLSGEPFPVSLWDSLHSLLPETCFL 253
Query: 120 NLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEGEIYA 179
NLYGSTEVSGDCTYFDC LP +L+ + SVPIG ISNC +VL+ D KP EGEI
Sbjct: 254 NLYGSTEVSGDCTYFDCSELPRLLKTEEIGSVPIGKSISNCKVVLL-GDEDKPYEGEICV 312
Query: 180 GGLCLSNGYFSESTFMPSEYVKLHNNSICN-CSVSCGSQTYFRTGDFARRIQSGDLVFLG 238
GLCLS GY S+ YVKLHNNS+CN + CGSQ Y+RTGD+ R++ SGDL+F+G
Sbjct: 313 SGLCLSQGYM-HSSIESEGYVKLHNNSLCNHLTNDCGSQLYYRTGDYGRQLSSGDLIFIG 371
Query: 239 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEI 298
R+DRT+K+NG+RMALEEI+ TL +PD+ + V+ + + EL L AF+VL ++ SS+
Sbjct: 372 RRDRTVKLNGKRMALEEIKTTLELNPDIAEAVVLLSRDETELASLKAFVVLNKESNSSDG 431
Query: 299 FLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKA 358
+ SI++W+ KLP MIPN FV ++ LP+TSSGKVDY +L+ T AQ
Sbjct: 432 IIFSIRNWMGGKLPPVMIPNHFVLVEKLPLTSSGKVDYEALARLKCPTTGAQDMMQSNGT 491
Query: 359 SDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNLGIDMRLIYNFPTPSKLE 418
+ LLQ I+KA AL+V+EV D+FF +GG+S+AAAH++H+LGIDMRLIY F +PS+L
Sbjct: 492 NSLLQNIKKAVCDALLVKEVSDDDDFFAIGGDSLAAAHLSHSLGIDMRLIYQFRSPSRLL 551
Query: 419 IALLEKKGLCNLDVSADANWKLNLEEDKEH---------QFHSGYSRTENHAVVS----- 464
I L EK+G D+ + KL+ + + ++ HSG + + +
Sbjct: 552 IYLSEKEGKLREDMQHNTTQKLDHKIESQNGNGLVSRTVPLHSGVTSGPTPSKLQCEKNN 611
Query: 465 --KRLKVNSTKYFKPELHHHKDGLPWNLSSVPMSCSFSRCNKVMHEEKIRGNDLCGVNWS 522
KRLK++ K+ + +K W+ + C+FSRCNKV E + WS
Sbjct: 612 SPKRLKIDYEKFSPKRMKENK---LWDSGFSQIQCAFSRCNKVHSPESCSNEEANREYWS 668
Query: 523 LEVPRNKRGFIQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWE 582
LE+PRN+ +QE+WKVHMESCVDASPLVVLKDS YLF+GSHS KF C DAK S+ WE
Sbjct: 669 LEIPRNQMVSMQEIWKVHMESCVDASPLVVLKDSKTYLFIGSHSRKFSCIDAKSGSMYWE 728
Query: 583 IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQ 642
LEGRIE SA V+ DFSQVV+GCYKGK+YFLD+ TG + W FQ CGE+KCQPVVD Q
Sbjct: 729 TILEGRIEGSAMVVGDFSQVVIGCYKGKLYFLDFSTGSLCWKFQACGEIKCQPVVDTSSQ 788
Query: 643 LIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKA 702
LIWCGSHDH LYALD+R+ CVYKL CGGSIF SPAIDE H LYVASTSGR+ A+S+K
Sbjct: 789 LIWCGSHDHTLYALDYRSQCCVYKLQCGGSIFASPAIDEGHSSLYVASTSGRVIAVSIKD 848
Query: 703 LPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGP 762
PFHTLWL ELE P F SLCIT + ++VICCLVDG V+A+ SG+IIWR RTGGPIFAGP
Sbjct: 849 SPFHTLWLFELEAPIFGSLCITPSTQNVICCLVDGQVIAMSPSGTIIWRYRTGGPIFAGP 908
Query: 763 CTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSID 822
C S LPSQVL+C RNG +YS E ESG L+WE ++GDPITASAYIDE+L + L+ D
Sbjct: 909 CMSHVLPSQVLVCCRNGCVYSLEPESGCLVWEDNIGDPITASAYIDENLHFESHELLASD 968
Query: 823 RLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGC 882
RLV +C+SSG +H+LRV + ++ S D V E ++ELQ DIFSSPVMIGGR+FVGC
Sbjct: 969 RLVTVCSSSGRVHVLRVRPSILSRD--SHDSKVGEITRMELQADIFSSPVMIGGRIFVGC 1026
Query: 883 RDDYIYCIALET 894
RDDY++C++LE+
Sbjct: 1027 RDDYVHCLSLES 1038
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297805142|ref|XP_002870455.1| hypothetical protein ARALYDRAFT_330218 [Arabidopsis lyrata subsp. lyrata] gi|297316291|gb|EFH46714.1| hypothetical protein ARALYDRAFT_330218 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1013 bits (2618), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/912 (55%), Positives = 643/912 (70%), Gaps = 32/912 (3%)
Query: 1 MQDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAY 60
MQ+LYP+ GE+ FKTS+ FIDHLQEFL IL + LV+PP LK+N+ SII FL+ Y
Sbjct: 221 MQELYPVVGEQRSAFKTSVGFIDHLQEFLGPILNSTPLVIPPFTLLKENMTSIIDFLEVY 280
Query: 61 SISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILN 120
SISRL VPS++R +LP LQ + + + SSLKL+VLSGE P+S+WD + L P LN
Sbjct: 281 SISRLLAVPSMIRAILPTLQHRGHNKLQSSLKLVVLSGEPFPVSLWDSLHSLLPETCFLN 340
Query: 121 LYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAG 180
LYGSTEVSGDCTYFDC LP IL+ + SVPIG PISNC ++L D KP EGEI G
Sbjct: 341 LYGSTEVSGDCTYFDCSGLPRILKTEEIGSVPIGKPISNCKVLLF-GDEDKPYEGEICVG 399
Query: 181 GLCLSNGYFSESTFMPSEYVKLHNN-SICN-CSVSCGSQTYFRTGDFARRIQSGDLVFLG 238
GLC+S GY S+ YVKLHNN S+CN + CGS+ Y+RTGD+ R++ SGDL+F+G
Sbjct: 400 GLCISQGYM-HSSIESQGYVKLHNNKSLCNHLTNDCGSELYYRTGDYGRQLSSGDLIFIG 458
Query: 239 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEI 298
R+DRT+K+NG+RMALEEIE TL +PDV + V+ + + EL L AF+VL ++ S +
Sbjct: 459 RRDRTVKLNGKRMALEEIETTLELNPDVAEAVVLLSRDEKELASLKAFLVLNKESNSGDG 518
Query: 299 FLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKA 358
+ SI++W+S KLP MIPN F+ ++SLP+T+SGKV+Y +L+ AQ
Sbjct: 519 IIFSIRNWMSEKLPTVMIPNHFLLVESLPLTASGKVNYEALARLKCPKTLAQDMMHSNGT 578
Query: 359 SDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNLGIDMRLIYNFPTPSKLE 418
+ LLQ I+KA AL+V+EVL D+FF +GG+S+AAAH++H+LGIDMRLIY F +PS+L
Sbjct: 579 NSLLQTIKKAVCDALVVKEVLDDDDFFAIGGDSLAAAHLSHSLGIDMRLIYQFRSPSRLL 638
Query: 419 IALLEKKGLCNLDVSADANWKLNLEEDKEH---------QFHSGYSRTENHAVVS----- 464
I L EK+G D + KL+ + + ++ HSG + + + +
Sbjct: 639 ICLSEKEGKLREDTQHNTTQKLDHKTESQNGNGLVSRTVPRHSGVTSSPTPSGMQCEKNN 698
Query: 465 --KRLKVNSTKYFKPELHHHKDGLPWNLSSVPMSCSFSRCNKVMHEEKIRGNDLCGVNWS 522
KRLK++S K F P++ K W+ C+FSRCNKV + NWS
Sbjct: 699 SPKRLKIDS-KIFSPKMKEKKS---WDSGFSQTQCAFSRCNKVYSPNSCSNEEANRENWS 754
Query: 523 LEVPRNKRGFIQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWE 582
+E+PRN+ +QE+WKVHMESCVDASPLVVLKDS YLF+GSHS KF C DAK S+ WE
Sbjct: 755 VEIPRNQMVSMQEIWKVHMESCVDASPLVVLKDSKTYLFIGSHSRKFSCIDAKSGSIYWE 814
Query: 583 IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQ 642
LEGR+E SA V+ DFSQVVVGCYKGK+YFLD+ TG + WTFQ CGE+KCQPVVDA Q
Sbjct: 815 TTLEGRVEGSAMVVGDFSQVVVGCYKGKLYFLDFSTGSLCWTFQACGEIKCQPVVDASSQ 874
Query: 643 LIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKA 702
LIWCGSHDH LYALD+R+ RCVYKL CGGSIF SP IDE H +LYVASTSGR+ A+S++
Sbjct: 875 LIWCGSHDHTLYALDYRSQRCVYKLQCGGSIFASPLIDEGHSLLYVASTSGRVIAVSIED 934
Query: 703 LPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGP 762
LPFHTLWL +LE P F SLCIT +R VDG V+A+ +SG+IIWR RTGGPIFAGP
Sbjct: 935 LPFHTLWLLDLEAPIFGSLCITPTSRS-----VDGQVIAMSTSGTIIWRYRTGGPIFAGP 989
Query: 763 CTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSID 822
C S LPSQVL+C RNGS+YS E ESG L+WEY++GDPITASAYIDE+L + L+ D
Sbjct: 990 CMSHVLPSQVLVCCRNGSVYSLEPESGCLVWEYNIGDPITASAYIDENLHFESHQLLASD 1049
Query: 823 RLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGC 882
RLV +C+SSG +H+LRV T S D V E A+LELQ DIFSSPVMIGGR+FVGC
Sbjct: 1050 RLVTVCSSSGRVHVLRVR---TNHSRDSLDLKVGEIARLELQADIFSSPVMIGGRIFVGC 1106
Query: 883 RDDYIYCIALET 894
RDDY++C++LE+
Sbjct: 1107 RDDYVHCLSLES 1118
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|8885525|dbj|BAA97455.1| unnamed protein product [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1001 bits (2587), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/912 (55%), Positives = 638/912 (69%), Gaps = 30/912 (3%)
Query: 1 MQDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAY 60
MQ+LYP+ GE+ FKTS+ FIDH+QEFL AIL++ LV+PP LK+N+ISII FL+ Y
Sbjct: 226 MQELYPVVGEQRFAFKTSVGFIDHIQEFLGAILSSTALVIPPFTLLKENMISIIDFLEEY 285
Query: 61 SISRLTTVPSLMRVVLPALQSQ-HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISIL 119
SISRL VPS++R +LP LQ + HN + S LKL+VLSGE P+S+WD + L P L
Sbjct: 286 SISRLLAVPSMIRAILPTLQHRGHNNKLQSCLKLVVLSGEPFPVSLWDSLHSLLPETCFL 345
Query: 120 NLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEGEIYA 179
NLYGSTEVSGDCTYFDC LP +L+ + SVPIG ISNC +VL+ D KP EGEI
Sbjct: 346 NLYGSTEVSGDCTYFDCSELPRLLKTEEIGSVPIGKSISNCKVVLL-GDEDKPYEGEICV 404
Query: 180 GGLCLSNGYFSESTFMPSEYVKLHNNSICN-CSVSCGSQTYFRTGDFARRIQSGDLVFLG 238
GLCLS GY S+ YVKLHNNS+CN + CGSQ Y+RTGD+ R++ SGDL+F+G
Sbjct: 405 SGLCLSQGYM-HSSIESEGYVKLHNNSLCNHLTNDCGSQLYYRTGDYGRQLSSGDLIFIG 463
Query: 239 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEI 298
R+DRT+K+NG+RMALEEIE TL +PD+ + V+ + + EL L AF+VL ++ SS+
Sbjct: 464 RRDRTVKLNGKRMALEEIETTLELNPDIAEAVVLLSRDETELASLKAFVVLNKESNSSDG 523
Query: 299 FLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKA 358
+ SI++W+ KLP MIPN FV ++ LP+TSSGKVDY +L+ T AQ
Sbjct: 524 IIFSIRNWMGGKLPPVMIPNHFVLVEKLPLTSSGKVDYEALARLKCPTTGAQDMMQSNGT 583
Query: 359 SDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNLGIDMRLIYNFPTPSKLE 418
+ LLQ I+KA AL+V+EV D+FF +GG+S+AAAH++H+LGIDMRLIY F +PS+L
Sbjct: 584 NSLLQNIKKAVCDALLVKEVSDDDDFFAIGGDSLAAAHLSHSLGIDMRLIYQFRSPSRLL 643
Query: 419 IALLEKKGLCNLDVSADANWKLNLEEDKEH---------QFHSGYSRTENHAVVS----- 464
I L EK+G D+ + KL+ + + ++ HSG + + +
Sbjct: 644 IYLSEKEGKLREDMQHNTTQKLDHKIESQNGNGLVSRTVPLHSGVTSGPTPSKLQCEKNN 703
Query: 465 --KRLKVNSTKYFKPELHHHKDGLPWNLSSVPMSCSFSRCNKVMHEEKIRGNDLCGVNWS 522
KRLK++ K+ + +K W+ + C+FSRCNKV E + WS
Sbjct: 704 SPKRLKIDYEKFSPKRMKENK---LWDSGFSQIQCAFSRCNKVHSPESCSNEEANREYWS 760
Query: 523 LEVPRNKRGFIQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWE 582
LE+PRN+ +QE+WKVHMESCVDASPLVVLKDS YLF+GSHS KF C DAK S+ WE
Sbjct: 761 LEIPRNQMVSMQEIWKVHMESCVDASPLVVLKDSKTYLFIGSHSRKFSCIDAKSGSMYWE 820
Query: 583 IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQ 642
LEGRIE SA V+ DFSQVV+GCYKGK+YFLD+ TG + W FQ CGE+KCQPVVD Q
Sbjct: 821 TILEGRIEGSAMVVGDFSQVVIGCYKGKLYFLDFSTGSLCWKFQACGEIKCQPVVDTSSQ 880
Query: 643 LIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKA 702
LIWCGSHDH LYALD+R+ CVYKL CGGSIF SPAIDE H LYVASTSGR+ A+S+K
Sbjct: 881 LIWCGSHDHTLYALDYRSQCCVYKLQCGGSIFASPAIDEGHSSLYVASTSGRVIAVSIKD 940
Query: 703 LPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGP 762
PFHTLWL ELE P F SLCIT + ++ VDG V+A+ SG+IIWR RTGGPIFAGP
Sbjct: 941 SPFHTLWLFELEAPIFGSLCITPSTQN-----VDGQVIAMSPSGTIIWRYRTGGPIFAGP 995
Query: 763 CTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSID 822
C S LPSQVL+C RNG +YS E ESG L+WE ++GDPITASAYIDE+L + L+ D
Sbjct: 996 CMSHVLPSQVLVCCRNGCVYSLEPESGCLVWEDNIGDPITASAYIDENLHFESHELLASD 1055
Query: 823 RLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGC 882
RLV +C+SSG +H+LRV + ++ S D V E ++ELQ DIFSSPVMIGGR+FVGC
Sbjct: 1056 RLVTVCSSSGRVHVLRVRPSILSRD--SHDSKVGEITRMELQADIFSSPVMIGGRIFVGC 1113
Query: 883 RDDYIYCIALET 894
RDDY++C++LE+
Sbjct: 1114 RDDYVHCLSLES 1125
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 900 | ||||||
| TAIR|locus:2142908 | 1040 | AT5G35930 [Arabidopsis thalian | 0.984 | 0.851 | 0.559 | 1.5e-271 | |
| UNIPROTKB|E1BSA3 | 1102 | AASDH "Uncharacterized protein | 0.323 | 0.264 | 0.369 | 2.1e-70 | |
| UNIPROTKB|E2RF67 | 1094 | AASDH "Uncharacterized protein | 0.291 | 0.239 | 0.356 | 2.3e-67 | |
| UNIPROTKB|E1BCU3 | 1106 | AASDH "Uncharacterized protein | 0.322 | 0.262 | 0.348 | 2.9e-65 | |
| UNIPROTKB|Q4L235 | 1098 | AASDH "Acyl-CoA synthetase fam | 0.29 | 0.237 | 0.351 | 4.6e-65 | |
| ZFIN|ZDB-GENE-041210-322 | 1149 | aasdh "aminoadipate-semialdehy | 0.376 | 0.295 | 0.322 | 3.4e-61 | |
| MGI|MGI:2442517 | 1100 | Aasdh "aminoadipate-semialdehy | 0.323 | 0.264 | 0.344 | 4.3e-61 | |
| RGD|1311135 | 1099 | Aasdh "aminoadipate-semialdehy | 0.302 | 0.247 | 0.347 | 9.9e-61 | |
| UNIPROTKB|G3V0G4 | 613 | AASDH "Acyl-CoA synthetase fam | 0.29 | 0.425 | 0.351 | 3.7e-50 | |
| FB|FBgn0000527 | 879 | e "ebony" [Drosophila melanoga | 0.404 | 0.414 | 0.292 | 2.1e-31 |
| TAIR|locus:2142908 AT5G35930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2611 (924.2 bits), Expect = 1.5e-271, P = 1.5e-271
Identities = 511/913 (55%), Positives = 646/913 (70%)
Query: 1 MQDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAY 60
MQ+LYP+ GE+ FKTS+ FIDH+QEFL AIL++ LV+PP LK+N+ISII FL+ Y
Sbjct: 134 MQELYPVVGEQRFAFKTSVGFIDHIQEFLGAILSSTALVIPPFTLLKENMISIIDFLEEY 193
Query: 61 SISRLTTVPSLMRVVLPALQSQ-HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISIL 119
SISRL VPS++R +LP LQ + HN + S LKL+VLSGE P+S+WD + L P L
Sbjct: 194 SISRLLAVPSMIRAILPTLQHRGHNNKLQSCLKLVVLSGEPFPVSLWDSLHSLLPETCFL 253
Query: 120 NLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEGEIYA 179
NLYGSTEVSGDCTYFDC LP +L+ + SVPIG ISNC +VL+ D KP EGEI
Sbjct: 254 NLYGSTEVSGDCTYFDCSELPRLLKTEEIGSVPIGKSISNCKVVLL-GDEDKPYEGEICV 312
Query: 180 GGLCLSNGYFSESTFMPSE-YVKLHNNSICN-CSVSCGSQTYFRTGDFARRIQSGDLVFL 237
GLCLS GY S + SE YVKLHNNS+CN + CGSQ Y+RTGD+ R++ SGDL+F+
Sbjct: 313 SGLCLSQGYMHSS--IESEGYVKLHNNSLCNHLTNDCGSQLYYRTGDYGRQLSSGDLIFI 370
Query: 238 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSE 297
GR+DRT+K+NG+RMALEEIE TL +PD+ + V+ + + EL L AF+VL ++ SS+
Sbjct: 371 GRRDRTVKLNGKRMALEEIETTLELNPDIAEAVVLLSRDETELASLKAFVVLNKESNSSD 430
Query: 298 IFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETK 357
+ SI++W+ KLP MIPN FV ++ LP+TSSGKVDY +L+ T AQ
Sbjct: 431 GIIFSIRNWMGGKLPPVMIPNHFVLVEKLPLTSSGKVDYEALARLKCPTTGAQDMMQSNG 490
Query: 358 ASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNLGIDMRLIYNFPTPSKL 417
+ LLQ I+KA AL+V+EV D+FF +GG+S+AAAH++H+LGIDMRLIY F +PS+L
Sbjct: 491 TNSLLQNIKKAVCDALLVKEVSDDDDFFAIGGDSLAAAHLSHSLGIDMRLIYQFRSPSRL 550
Query: 418 EIALLEKKGLCNLDVSADANWKLNLEEDKEH---------QFHSGYSRTENHAVVS---- 464
I L EK+G D+ + KL+ + + ++ HSG + + +
Sbjct: 551 LIYLSEKEGKLREDMQHNTTQKLDHKIESQNGNGLVSRTVPLHSGVTSGPTPSKLQCEKN 610
Query: 465 ---KRLKVNSTKYFKPELHHHKDGLPWNLSSVPMSCSFSRCNKVMHEEKIRGNDLCGVNW 521
KRLK++ K F P+ K+ W+ + C+FSRCNKV E + W
Sbjct: 611 NSPKRLKIDYEK-FSPK--RMKENKLWDSGFSQIQCAFSRCNKVHSPESCSNEEANREYW 667
Query: 522 SLEVPRNKRGFIQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLW 581
SLE+PRN+ +QE+WKVHMESCVDASPLVVLKDS YLF+GSHS KF C DAK S+ W
Sbjct: 668 SLEIPRNQMVSMQEIWKVHMESCVDASPLVVLKDSKTYLFIGSHSRKFSCIDAKSGSMYW 727
Query: 582 EIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPR 641
E LEGRIE SA V+ DFSQVV+GCYKGK+YFLD+ TG + W FQ CGE+KCQPVVD
Sbjct: 728 ETILEGRIEGSAMVVGDFSQVVIGCYKGKLYFLDFSTGSLCWKFQACGEIKCQPVVDTSS 787
Query: 642 QLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVK 701
QLIWCGSHDH LYALD+R+ CVYKL CGGSIF SPAIDE H LYVASTSGR+ A+S+K
Sbjct: 788 QLIWCGSHDHTLYALDYRSQCCVYKLQCGGSIFASPAIDEGHSSLYVASTSGRVIAVSIK 847
Query: 702 ALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAG 761
PFHTLWL ELE P F SLCIT + ++VICCLVDG V+A+ SG+IIWR RTGGPIFAG
Sbjct: 848 DSPFHTLWLFELEAPIFGSLCITPSTQNVICCLVDGQVIAMSPSGTIIWRYRTGGPIFAG 907
Query: 762 PCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSI 821
PC S LPSQVL+C RNG +YS E ESG L+WE ++GDPITASAYIDE+L + L+
Sbjct: 908 PCMSHVLPSQVLVCCRNGCVYSLEPESGCLVWEDNIGDPITASAYIDENLHFESHELLAS 967
Query: 822 DRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVG 881
DRLV +C+SSG +H+LRV + ++ S D V E ++ELQ DIFSSPVMIGGR+FVG
Sbjct: 968 DRLVTVCSSSGRVHVLRVRPSILSRD--SHDSKVGEITRMELQADIFSSPVMIGGRIFVG 1025
Query: 882 CRDDYIYCIALET 894
CRDDY++C++LE+
Sbjct: 1026 CRDDYVHCLSLES 1038
|
|
| UNIPROTKB|E1BSA3 AASDH "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 476 (172.6 bits), Expect = 2.1e-70, Sum P(4) = 2.1e-70
Identities = 113/306 (36%), Positives = 156/306 (50%)
Query: 537 WKVHMESCVDASPLVVLKDSD---IYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSA 593
WK + CVDASPL+V+ D +FVGSHSH D V WE KL RIE SA
Sbjct: 761 WKSNTRRCVDASPLIVISSKDEESASVFVGSHSHAMQAIDLDTGEVKWEKKLGDRIESSA 820
Query: 594 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNL 653
V + +VVGCY G +Y L G+ YWTF T VK VVD L++ GSHD ++
Sbjct: 821 CVSKCGNFIVVGCYDGLVYVLQSSDGEAYWTFATEDTVKSSAVVDPSSGLVYIGSHDQHM 880
Query: 654 YALDFRNYRCVYKLPC-GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHE 712
YALD CV+KL C GG++F SP I +YVA+ G L A++ + + +W
Sbjct: 881 YALDIYEKMCVWKLHCEGGAVFSSPCISSFPHHVYVATLGGLLLAVN--PVTGNKIWKSF 938
Query: 713 LEVPAFASLCITSANRHVICC-LVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQ 771
L P F+S N +C VDG++ SG +W+ T GP+F+ PC S +
Sbjct: 939 LGKPLFSS---PHCNEKCVCIGCVDGNLYCYTHSGEKVWQFSTNGPVFSSPCISSLTKQE 995
Query: 772 VLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYI---DEHLQLKLESCLSIDRLVCIC 828
V S + IY E GNLLW++ + + ++ D+ L + +S D V I
Sbjct: 996 VFFGSHDHFIYCCNTE-GNLLWKFEATSSVYGTPFVFQSDDSKNKVLLAAVSTDGKVWIL 1054
Query: 829 TS-SGS 833
+ SG+
Sbjct: 1055 NARSGT 1060
|
|
| UNIPROTKB|E2RF67 AASDH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 441 (160.3 bits), Expect = 2.3e-67, Sum P(4) = 2.3e-67
Identities = 98/275 (35%), Positives = 146/275 (53%)
Query: 537 WKVHMESCVDASPLVVLK---DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSA 593
W+ CVDASPLVV+ +S +++GSHSH+ + D V WE LE RIE SA
Sbjct: 755 WRSDTGKCVDASPLVVIPAVDESSATVYIGSHSHRMMALDLYSGKVKWEQILEDRIESSA 814
Query: 594 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNL 653
+ + +VVGCY G +Y L +G+ YW F T VK +D L++ GSHD +
Sbjct: 815 CISKCGNFIVVGCYNGLVYVLKSNSGEKYWMFSTEDAVKSSATMDPTTGLLYIGSHDQHS 874
Query: 654 YALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 713
YALD +CV+K CGG++F SP + + LYVA+ G L AI+ + +W H
Sbjct: 875 YALDIYKKKCVWKSQCGGTVFSSPCLSLIPHHLYVATLGGLLLAINPAT--GNRVWKHSC 932
Query: 714 EVPAFAS--LCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQ 771
P F+S C+ ++V VDG+++ SG +W+ T PIF+ PCTS A +
Sbjct: 933 GKPLFSSPRCCL----QYVCIGCVDGNLLCFTHSGEQVWQFSTSEPIFSSPCTS-ASEQE 987
Query: 772 VLICSRNGSIYSFEQESGNLLWEYSVGDPITASAY 806
+ S + IY + G+L W++ + A+ +
Sbjct: 988 IFFGSHDCFIYCCNMK-GHLQWKFETTSQVYATPF 1021
|
|
| UNIPROTKB|E1BCU3 AASDH "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 435 (158.2 bits), Expect = 2.9e-65, Sum P(4) = 2.9e-65
Identities = 107/307 (34%), Positives = 155/307 (50%)
Query: 537 WKVHMESCVDASPLVVLK--D-SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSA 593
W+ CVDASPLVV+ D S +++GSHSH+ I D V WE L RIE SA
Sbjct: 759 WRSDTGKCVDASPLVVIPAIDKSSATVYIGSHSHRMIAVDLYSGKVKWEQILGDRIESSA 818
Query: 594 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNL 653
V + +VVGCY G +Y L +G+ YW F T VK +D L++ GSHD +
Sbjct: 819 CVSKCGNFIVVGCYNGLVYVLKSNSGEKYWMFSTEDAVKSSATMDPTTGLLYIGSHDQHA 878
Query: 654 YALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 713
YALD +CV+KL CGG++F SP + + LY A+ G L AI+ LW H
Sbjct: 879 YALDIYKKKCVWKLKCGGTVFSSPCLSLIPSHLYFATLGGLLLAINPAT--GDRLWKHSC 936
Query: 714 EVPAFAS--LCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQ 771
P F+S C+ ++V VDG+++ G +W+ T PIF+ PCTS A +
Sbjct: 937 GKPLFSSPRCCL----QYVFIGCVDGNLLCFTHFGEQVWQFSTNEPIFSSPCTS-ASEQE 991
Query: 772 VLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYI---DEHLQLKLESCLSIDRLVCIC 828
+ S + IY + G+L W++ + ++ ++ H L + S D + I
Sbjct: 992 IFFGSHDCFIYCCSMK-GHLQWKFETTSRVYSTPFVFRNHNHNSEMLLAAASTDGKLWIL 1050
Query: 829 TS-SGSI 834
S SG +
Sbjct: 1051 ESKSGQL 1057
|
|
| UNIPROTKB|Q4L235 AASDH "Acyl-CoA synthetase family member 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 424 (154.3 bits), Expect = 4.6e-65, Sum P(4) = 4.6e-65
Identities = 97/276 (35%), Positives = 144/276 (52%)
Query: 537 WKVHMESCVDASPLVVLKDSD---IYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSA 593
W+ CVDASPLVV+ D +++GSHSH+ D V WE L RIE SA
Sbjct: 759 WRSDTGKCVDASPLVVIPTFDKSSTTVYIGSHSHRMKAVDFYSGKVKWEQILGDRIESSA 818
Query: 594 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNL 653
V + +VVGCY G +Y L +G+ YW F T VK +D LI+ GSHD +
Sbjct: 819 CVSKCGNFIVVGCYNGLVYVLKSNSGEKYWMFTTEDAVKSSATMDPTTGLIYIGSHDQHA 878
Query: 654 YALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 713
YALD +CV+K CGG++F SP ++ + LY A+ G L A++ + +W H
Sbjct: 879 YALDIYRKKCVWKSKCGGTVFSSPCLNLIPHHLYFATLGGLLLAVNPAT--GNVIWKHSC 936
Query: 714 EVPAFAS-LCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQ- 771
P F+S C ++++ VDG+++ G +W+ T GPIF+ PCTS PS+
Sbjct: 937 GKPLFSSPQC---CSQYICIGCVDGNLLCFTHFGEQVWQFSTSGPIFSSPCTS---PSEQ 990
Query: 772 -VLICSRNGSIYSFEQESGNLLWEYSVGDPITASAY 806
+ S + IY + G+L W++ + A+ +
Sbjct: 991 KIFFGSHDCFIYCCNMK-GHLQWKFETTSRVYATPF 1025
|
|
| ZFIN|ZDB-GENE-041210-322 aasdh "aminoadipate-semialdehyde dehydrogenase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 524 (189.5 bits), Expect = 3.4e-61, Sum P(2) = 3.4e-61
Identities = 124/384 (32%), Positives = 199/384 (51%)
Query: 533 IQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECS 592
++ LW+ CVDASP++++ +F+GSHSH+ D R V+WE L R+E S
Sbjct: 790 LRVLWRSDTGRCVDASPMLLVAPDRTTVFIGSHSHRLQALDLSRGEVIWERILGDRLESS 849
Query: 593 AAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHN 652
AA+ + V +GCY ++YFLD GD WTF+T VK P VD L++ GSHD +
Sbjct: 850 AAISSCGGLVAIGCYDRQMYFLDVSCGDTVWTFETGDVVKSSPTVDPKTGLVFAGSHDGH 909
Query: 653 LYALDFRNYRCVYKLPCGG-SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLH 711
+YAL+ C ++ CGG ++F SP + LY +S G L ++ + LW +
Sbjct: 910 VYALNPLTKTCTWQHYCGGGAVFSSPCVHLSPRQLYCSSLGGHLHCLNPDS--GKVLWKY 967
Query: 712 ELEVPAFASL-CITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPC-TSFAL- 768
P F+S C S+ V V+GH++ + SG+ +W T GP+F+ PC +S L
Sbjct: 968 SSSAPFFSSPHCSDSS---VFIGSVNGHIIGISHSGNTLWDFSTDGPVFSSPCISSLTLL 1024
Query: 769 ----------------PSQVLIC-SRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHL 811
P+ ++ C S +G +Y ++G+LLW++ + ++ ++
Sbjct: 1025 TNQPPSTTPSSSVTTSPNHIVTCGSHDGHVYCLNAQNGSLLWQFQTTGKVFSTPFVFSGA 1084
Query: 812 QLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSP 871
L + L +C++ G + +L TG +Q+ A L L G++FSSP
Sbjct: 1085 LWGLRT------LAAVCSTDGKVWVLDGE---TG---------IQK-ATLSLPGELFSSP 1125
Query: 872 VMIGGRVFVGCRDDYIYCIALETQ 895
V+ G ++ VGCR+DY+YC+ L TQ
Sbjct: 1126 VIWGSKLVVGCRNDYVYCLELTTQ 1149
|
|
| MGI|MGI:2442517 Aasdh "aminoadipate-semialdehyde dehydrogenase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 433 (157.5 bits), Expect = 4.3e-61, Sum P(4) = 4.3e-61
Identities = 107/311 (34%), Positives = 155/311 (49%)
Query: 533 IQELWKVHMESCVDASPLVV---LKDS-DIYLFVGSHSHKFICADAKRSSVLWEIKLEGR 588
++E W+ CVDASPL+V ++D +++GSHSH D WE L R
Sbjct: 753 LRERWRSDTGKCVDASPLLVRAAVQDKPSTTVYIGSHSHTVKAVDLSSGETRWEQLLGDR 812
Query: 589 IECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGS 648
IE SA V + +VVGCY G +Y L +G+ YWTF T VK P VD LI+ GS
Sbjct: 813 IESSACVSKCGNFIVVGCYNGLVYVLKSNSGEKYWTFTTEDAVKSSPAVDPTTGLIYVGS 872
Query: 649 HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTL 708
HD + YALD +CV+KL C G++F SP + LY A+ G L A++ + T+
Sbjct: 873 HDQHAYALDIYEKKCVWKLNCEGALFSSPCVSLSPHHLYCATLGGLLLALNPAS--GSTV 930
Query: 709 WLHELEVPAFASLCITSANRHVICC-LVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFA 767
W P F+S + IC VDG ++ SG +WR GGPIF+ PC S A
Sbjct: 931 WKRSCGKPLFSS---PRCYQQYICIGCVDGSLLCFTHSGEQVWRFAAGGPIFSSPCVS-A 986
Query: 768 LPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAY-IDEHLQLKLESCLSIDRLVC 826
++ S + IY +E G+L W++ + A+ + H + S D L+
Sbjct: 987 AEQEIFFGSHDCFIYCCSKE-GHLRWKFETTARVYATPFAFSNHPR-------SDDALLA 1038
Query: 827 ICTSSGSIHIL 837
++ G + +L
Sbjct: 1039 AASTDGKLWVL 1049
|
|
| RGD|1311135 Aasdh "aminoadipate-semialdehyde dehydrogenase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 419 (152.6 bits), Expect = 9.9e-61, Sum P(4) = 9.9e-61
Identities = 99/285 (34%), Positives = 143/285 (50%)
Query: 533 IQELWKVHMESCVDASPLVVLK---D-SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR 588
++E W+ CVDASPL+V+ D S +++GSHSH D + WE ++ R
Sbjct: 752 LRERWRSDTGKCVDASPLLVVAAVGDTSSTTVYIGSHSHTVKAVDLHSGEMRWERRVGDR 811
Query: 589 IECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGS 648
IE SA V + +VVGCY G +Y L +G+ +WTF T VK P VD LI+ GS
Sbjct: 812 IESSACVSKCGNFIVVGCYDGLVYVLKSNSGEKHWTFPTEDAVKSSPAVDPTTGLIYVGS 871
Query: 649 HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTL 708
HD + YALD +CV+KL C G++F SP + LY A+ G L A++ +
Sbjct: 872 HDQHAYALDIYEKKCVWKLKCEGALFSSPCLSLGPHHLYCATLGGLLLAVNPATGSL--I 929
Query: 709 WLHELEVPAFASLCITSANRHVICC-LVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFA 767
W P F+S +H +C VDG ++ SG +WR GGPIF+ PC S A
Sbjct: 930 WKRPCGKPLFSS---PRCYQHYVCIGCVDGSLLCFSHSGEQVWRFSAGGPIFSSPCIS-A 985
Query: 768 LPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAY-IDEHL 811
+ S + +Y E G L W++ + ++ + HL
Sbjct: 986 SEQDIYFGSHDCFLYCCSTEGG-LRWKFETTARVYSTPFAFPNHL 1029
|
|
| UNIPROTKB|G3V0G4 AASDH "Acyl-CoA synthetase family member 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 424 (154.3 bits), Expect = 3.7e-50, Sum P(3) = 3.7e-50
Identities = 97/276 (35%), Positives = 144/276 (52%)
Query: 537 WKVHMESCVDASPLVVLKDSD---IYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSA 593
W+ CVDASPLVV+ D +++GSHSH+ D V WE L RIE SA
Sbjct: 274 WRSDTGKCVDASPLVVIPTFDKSSTTVYIGSHSHRMKAVDFYSGKVKWEQILGDRIESSA 333
Query: 594 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNL 653
V + +VVGCY G +Y L +G+ YW F T VK +D LI+ GSHD +
Sbjct: 334 CVSKCGNFIVVGCYNGLVYVLKSNSGEKYWMFTTEDAVKSSATMDPTTGLIYIGSHDQHA 393
Query: 654 YALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 713
YALD +CV+K CGG++F SP ++ + LY A+ G L A++ + +W H
Sbjct: 394 YALDIYRKKCVWKSKCGGTVFSSPCLNLIPHHLYFATLGGLLLAVNPAT--GNVIWKHSC 451
Query: 714 EVPAFAS-LCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQ- 771
P F+S C ++++ VDG+++ G +W+ T GPIF+ PCTS PS+
Sbjct: 452 GKPLFSSPQC---CSQYICIGCVDGNLLCFTHFGEQVWQFSTSGPIFSSPCTS---PSEQ 505
Query: 772 -VLICSRNGSIYSFEQESGNLLWEYSVGDPITASAY 806
+ S + IY + G+L W++ + A+ +
Sbjct: 506 KIFFGSHDCFIYCCNMK-GHLQWKFETTSRVYATPF 540
|
|
| FB|FBgn0000527 e "ebony" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 379 (138.5 bits), Expect = 2.1e-31, P = 2.1e-31
Identities = 119/407 (29%), Positives = 211/407 (51%)
Query: 10 EELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVP 69
E + +FKT+++F+D + E ++ ++V P + K+ ++ L+ Y I RL VP
Sbjct: 225 EAVSVFKTALTFVDSIAELWGPLMCGLAILVVPKA-VTKDPQRLVALLERYKIRRLVLVP 283
Query: 70 SLMRVVLPALQSQHN---MHVPSSLKLLVLSGEVLPLSMWDIISKLFPN--ISILNLYGS 124
+L+R +L L+ + + +L++ V SGE L +S+ F + N YGS
Sbjct: 284 TLLRSLLMYLKMEGGGAAQKLLYNLQIWVCSGEPLSVSLASSFFDYFDEGVHRLYNFYGS 343
Query: 125 TEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD--TVKPDE-GEIYAGG 181
TEV GD TYF C+ S ++S +VPIG+P+SN + L+++D VK E GEI+A G
Sbjct: 344 TEVLGDVTYFACE---SKKQLSLYDNVPIGIPLSNTVVYLLDADYRPVKNGEIGEIFASG 400
Query: 182 LCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 241
L L+ GY + P +++ N + +V +RTGD+ +++G +++ GR D
Sbjct: 401 LNLAAGYVNGRD--PERFLE---NPL---AVEKKYARLYRTGDYGS-LKNGSIMYEGRTD 451
Query: 242 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGEL-VILVAFIVLKEKKTSSEIFL 300
+KI G R+ L E+E + P +VD A+V H G++ ++AF+ L++ + +
Sbjct: 452 SQVKIRGHRVDLSEVEKNVAELP-LVDKAIVLCYHAGQVDQAILAFVKLRDD--APMVTE 508
Query: 301 SSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASL----------SASTSFTISAQ 350
+ +++ + KL M P + V ++ +P+ +GKVD +L +S +
Sbjct: 509 TQMEARLKDKLADYMTP-QVVILEHVPLLVNGKVDRQALLKTYETANNNEGDSSIVLDFD 567
Query: 351 HDA--DETK--ASDLLQVIRKAFGHALMVEEVLH-HDNFFTMGGNSI 392
+ ++ K A DL + + G + E L H NF+ +GGNS+
Sbjct: 568 YSQVPEDLKLTARDLFETVGGVIGRS--TETTLPPHSNFYELGGNSL 612
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| F4K1G2 | AEE19_ARATH | No assigned EC number | 0.5559 | 0.9855 | 0.8528 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | gw1.XIX.1316.1 | hypothetical protein (1054 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | eugene3.33130002 | Predicted protein (340 aa) | • | • | 0.509 | ||||||
 | fgenesh4_pg.C_scaffold_9979000001 | hypothetical protein (504 aa) | • | • | 0.430 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 900 | |||
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 2e-78 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 1e-57 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 9e-50 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 9e-47 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 6e-46 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 6e-46 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 7e-46 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 5e-45 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 5e-45 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 6e-45 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 3e-44 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 3e-44 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 4e-44 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 2e-43 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 3e-42 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 5e-41 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 5e-36 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 5e-36 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 1e-34 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 2e-34 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 7e-34 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 2e-33 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 4e-32 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 2e-31 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 6e-30 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 5e-28 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 2e-27 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 1e-26 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 2e-25 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 3e-25 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 9e-24 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 1e-22 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 1e-21 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 1e-20 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 1e-19 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 4e-19 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 5e-19 | |
| TIGR03443 | 1389 | TIGR03443, alpha_am_amid, L-aminoadipate-semialdeh | 7e-19 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 9e-19 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 2e-18 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 2e-18 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 3e-18 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 3e-18 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 1e-17 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 2e-17 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 4e-17 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 1e-16 | |
| cd05924 | 365 | cd05924, FACL_like_5, Uncharacterized subfamily of | 2e-16 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 3e-16 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 3e-16 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 4e-16 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 2e-15 | |
| PRK00174 | 637 | PRK00174, PRK00174, acetyl-CoA synthetase; Provisi | 3e-15 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 6e-15 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 7e-15 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 2e-14 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 3e-14 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 3e-14 | |
| TIGR02316 | 628 | TIGR02316, propion_prpE, propionate--CoA ligase | 1e-13 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 1e-13 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 1e-13 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 2e-13 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 2e-13 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 4e-13 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 9e-13 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 9e-13 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 9e-13 | |
| PRK07638 | 487 | PRK07638, PRK07638, acyl-CoA synthetase; Validated | 1e-12 | |
| TIGR03300 | 377 | TIGR03300, assembly_YfgL, outer membrane assembly | 1e-12 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 2e-12 | |
| PRK13382 | 537 | PRK13382, PRK13382, acyl-CoA synthetase; Provision | 2e-12 | |
| pfam13360 | 234 | pfam13360, PQQ_2, PQQ-like domain | 3e-12 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 4e-12 | |
| pfam13360 | 234 | pfam13360, PQQ_2, PQQ-like domain | 7e-12 | |
| COG1520 | 370 | COG1520, COG1520, FOG: WD40-like repeat [Function | 7e-12 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 8e-12 | |
| pfam13360 | 234 | pfam13360, PQQ_2, PQQ-like domain | 2e-11 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 2e-11 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 2e-11 | |
| PRK10524 | 629 | PRK10524, prpE, propionyl-CoA synthetase; Provisio | 2e-11 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 4e-11 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 7e-11 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 7e-11 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 7e-11 | |
| cd10276 | 358 | cd10276, BamB_YfgL, Beta-barrel assembly machinery | 9e-11 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 1e-10 | |
| COG1520 | 370 | COG1520, COG1520, FOG: WD40-like repeat [Function | 2e-10 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 2e-10 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 2e-10 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 4e-10 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 4e-10 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 4e-10 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 5e-10 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 6e-10 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 6e-10 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 8e-10 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 8e-10 | |
| pfam13360 | 234 | pfam13360, PQQ_2, PQQ-like domain | 9e-10 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 1e-09 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 1e-09 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 2e-09 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 2e-09 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 2e-09 | |
| PRK08308 | 414 | PRK08308, PRK08308, acyl-CoA synthetase; Validated | 2e-09 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 2e-09 | |
| TIGR03300 | 377 | TIGR03300, assembly_YfgL, outer membrane assembly | 4e-09 | |
| COG1520 | 370 | COG1520, COG1520, FOG: WD40-like repeat [Function | 6e-09 | |
| PLN02654 | 666 | PLN02654, PLN02654, acetate-CoA ligase | 6e-09 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 7e-09 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 7e-09 | |
| PRK07824 | 358 | PRK07824, PRK07824, O-succinylbenzoic acid--CoA li | 1e-08 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 1e-08 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 1e-08 | |
| PRK13383 | 516 | PRK13383, PRK13383, acyl-CoA synthetase; Provision | 1e-08 | |
| PTZ00237 | 647 | PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi | 2e-08 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 2e-08 | |
| PRK07445 | 452 | PRK07445, PRK07445, O-succinylbenzoic acid--CoA li | 3e-08 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 3e-08 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 3e-08 | |
| TIGR03300 | 377 | TIGR03300, assembly_YfgL, outer membrane assembly | 4e-08 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 4e-08 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 7e-08 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 9e-08 | |
| cd10276 | 358 | cd10276, BamB_YfgL, Beta-barrel assembly machinery | 1e-07 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 1e-07 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 2e-07 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 2e-07 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 2e-07 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 2e-07 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 2e-07 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 3e-07 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 5e-07 | |
| TIGR02372 | 386 | TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase | 9e-07 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 2e-06 | |
| TIGR01217 | 652 | TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | 2e-06 | |
| cd10276 | 358 | cd10276, BamB_YfgL, Beta-barrel assembly machinery | 3e-06 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 4e-06 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 4e-06 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 7e-06 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 8e-06 | |
| cd10276 | 358 | cd10276, BamB_YfgL, Beta-barrel assembly machinery | 1e-05 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 1e-05 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 1e-05 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 1e-05 | |
| cd05915 | 509 | cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase | 4e-05 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 6e-05 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 7e-05 | |
| PRK03584 | 655 | PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr | 1e-04 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 2e-04 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 2e-04 | |
| PRK11138 | 394 | PRK11138, PRK11138, outer membrane biogenesis prot | 4e-04 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 5e-04 | |
| cd05905 | 556 | cd05905, Dip2, Disco-interacting protein 2 (Dip2) | 5e-04 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 6e-04 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 7e-04 | |
| PRK06060 | 705 | PRK06060, PRK06060, acyl-CoA synthetase; Validated | 7e-04 | |
| COG1520 | 370 | COG1520, COG1520, FOG: WD40-like repeat [Function | 8e-04 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 8e-04 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 8e-04 | |
| PRK05851 | 525 | PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c | 0.001 | |
| pfam01011 | 38 | pfam01011, PQQ, PQQ enzyme repeat | 0.001 | |
| pfam13570 | 39 | pfam13570, YWTD, YWTD domain | 0.001 | |
| cd10277 | 529 | cd10277, PQQ_ADH_I, Ethanol dehydrogenase, a bacte | 0.001 | |
| COG1520 | 370 | COG1520, COG1520, FOG: WD40-like repeat [Function | 0.002 | |
| PRK11138 | 394 | PRK11138, PRK11138, outer membrane biogenesis prot | 0.002 | |
| pfam01011 | 38 | pfam01011, PQQ, PQQ enzyme repeat | 0.002 | |
| pfam13570 | 39 | pfam13570, YWTD, YWTD domain | 0.002 | |
| pfam00550 | 66 | pfam00550, PP-binding, Phosphopantetheine attachme | 0.002 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 0.002 | |
| TIGR03075 | 526 | TIGR03075, PQQ_enz_alc_DH, PQQ-dependent dehydroge | 0.002 | |
| COG1541 | 438 | COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme | 0.003 | |
| PLN03051 | 499 | PLN03051, PLN03051, acyl-activating enzyme; Provis | 0.003 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 0.003 | |
| PLN03052 | 728 | PLN03052, PLN03052, acetate--CoA ligase; Provision | 0.004 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 0.004 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 261 bits (670), Expect = 2e-78
Identities = 110/347 (31%), Positives = 174/347 (50%), Gaps = 34/347 (9%)
Query: 1 MQDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAY 60
+Q+ Y L + +L S SF + E +L+ TLV+ P E+ ++ ++ L+ +
Sbjct: 125 LQERYGLTAGDRVLQFASFSFDASVWEIFPPLLSGATLVLAPP-EVLRDPEALAELLREH 183
Query: 61 SISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILN 120
I+ L VPSL+R +L AL+ SL+L+++ GE LP + +LFP ++N
Sbjct: 184 RITVLHLVPSLLRALLDALEPAA----LPSLRLVIVGGEALPAELVRRWRELFPGARLVN 239
Query: 121 LYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI-VLVESDTVKPD--EGEI 177
YG TE + D TY + + SVPIG PI+N + VL E P GE+
Sbjct: 240 AYGPTETTVDVTYHEVDP-----DDLDGGSVPIGRPIANTRVYVLDEDLRPVPVGVPGEL 294
Query: 178 YAGGLCLSNGYF-----SESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSG 232
Y GG ++ GY + F+P + + +RTGD AR + G
Sbjct: 295 YIGGAGVARGYLNRPELTAERFVPDPFGG-------------PGERLYRTGDLARWLPDG 341
Query: 233 DLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEK 292
+L FLGR D +KI G R+ L EIE L HP V + VV+ + LVA++V
Sbjct: 342 NLEFLGRADDQVKIRGYRIELGEIEAALLAHPGVREAVVVAREDGAGEKRLVAYVVPAAG 401
Query: 293 KTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASL 339
+ ++++++ +LP M+P+ FV +D+LP+T +GKVD +L
Sbjct: 402 AELDA---AELRAFLAERLPDYMVPSAFVVLDALPLTPNGKVDRKAL 445
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 204 bits (522), Expect = 1e-57
Identities = 98/317 (30%), Positives = 155/317 (48%), Gaps = 31/317 (9%)
Query: 28 FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVL--PALQSQHNM 85
F + A V+P E + +++ FL+ + ++ +VPS ++L L +
Sbjct: 157 FPALASGATLYVIPK--EQIADPLALFEFLKEHGLTVWVSVPSFASLLLLSRELNPESL- 213
Query: 86 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEM 145
SL+ + GEVLP + + + FPN I+NLYG TE + T ++ P
Sbjct: 214 ---PSLRTFLFCGEVLPKKLAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEPL---- 266
Query: 146 STLKSVPIGLPISNCDIVLVESD--TVKP-DEGEIYAGGLCLSNGYFSESTFMPSEYVKL 202
S + +PIG P ++++ D V P +EGE+ G +S GY +
Sbjct: 267 SRNEPLPIGYPKPGLRALILDEDGRPVPPGEEGELVIAGPQVSPGYLNNPE--------K 318
Query: 203 HNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRG 262
+ Q ++RTGD G LV+LGRKD IK++G R+ LEEIE LR
Sbjct: 319 TAKAF----FQDEGQRWYRTGDLVYLEDDGLLVYLGRKDFQIKLHGYRIELEEIEAALRA 374
Query: 263 HPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 322
P V + V+ ++V LVAF+V KE ++ +K + +LP MIP RFV+
Sbjct: 375 LPGVEEAVVLPVPKGEKVVRLVAFVVGKEGALDTKA----LKKELKKRLPPYMIPRRFVY 430
Query: 323 MDSLPMTSSGKVDYASL 339
+DSLP+ ++GK+D +L
Sbjct: 431 LDSLPLNANGKIDRKAL 447
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 9e-50
Identities = 101/334 (30%), Positives = 153/334 (45%), Gaps = 47/334 (14%)
Query: 18 SISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLP 77
SI+F + E + +L TLV+PP ++L FL ++ PSL+ ++ P
Sbjct: 148 SIAFDVSILEIFTTLLAGGTLVIPPEELRLEDLA---EFLNRLRVTVAHLTPSLLALLDP 204
Query: 78 ALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCK 137
VPS L+ L+L GE P + ++ + +LN YG TE + T
Sbjct: 205 ED-------VPS-LRTLILGGEACPQA---LVDRWSKPRRLLNTYGPTEATVTATASRLT 253
Query: 138 RLPSILEMSTLKSVPIGLPISNCDIVLVESDT---VKPDE-GEIYAGGLCLSNGYF---- 189
P K V IG P+ N +++ D V GE+ GG ++ GY
Sbjct: 254 --PG-------KPVNIGRPLPNYTCWVLDPDLEPLVPIGAVGELCIGGPGVARGYLNRPE 304
Query: 190 -SESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKING 248
+ F+P + + +RTGD R ++ G L FLGRKD +KI G
Sbjct: 305 LTAEKFIPDPFWLNNP-----------GGRIYRTGDLVRYLEDGSLEFLGRKDDQVKIRG 353
Query: 249 QRMALEEIEHTLRGHPDVVDTAVV-SHKHQGELVILVAFIVLKEKKTSSE--IFLSSIKS 305
QR+ L EIE LR P VV AVV G LVAF+ + + ++ ++S
Sbjct: 354 QRIELGEIEAVLRALPGVVVAAVVLLLDDPGG-KQLVAFLAVDGAAGGEPADVDIALLRS 412
Query: 306 WVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASL 339
+ +LP M+P+ +V +D LP+T+SGKVD +L
Sbjct: 413 ALRERLPSYMVPSVYVPLDELPLTASGKVDRKAL 446
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 173 bits (441), Expect = 9e-47
Identities = 101/342 (29%), Positives = 159/342 (46%), Gaps = 44/342 (12%)
Query: 8 HGEEL--LLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRL 65
EEL +L TSI F D LS L + L N +++ ++ +
Sbjct: 142 SAEELAGVLAATSICF-D-----LSVFEIFVPLSTGGRVVLADNALALPDLPAKAEVTLI 195
Query: 66 TTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGST 125
TVPS R +L +H+ +PSS++ + L+GE LP + + L + NLYG +
Sbjct: 196 NTVPSAARELL-----RHDA-LPSSVRTVNLAGEPLPQELVQRLYALPQVERVYNLYGPS 249
Query: 126 EVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI-VLVESDTVKPD--EGEIYAGGL 182
E D TY + +E ++ IG P++ VL P GE+Y GG
Sbjct: 250 E---DTTYSTY----AEVEPGASRTPSIGRPLAGTQAYVLDAHLQPVPVGVPGELYIGGA 302
Query: 183 CLSNGYF-----SESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFL 237
++ GY + F+P N + + +RTGD RR G L +L
Sbjct: 303 GVARGYLGRPELTAERFLP-------NPFAGS-----PGERLYRTGDLVRRRADGQLEYL 350
Query: 238 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSE 297
GR D +K+ G R+ L EIE LR P V + VV+ LVA+IV +
Sbjct: 351 GRIDDQVKVRGFRIELGEIEAALRSIPGVAEAVVVAIGDAAGDRQLVAYIVADP---GAA 407
Query: 298 IFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASL 339
I + +++ ++++LP M+P+RFV +D+LP+T +GK+D +L
Sbjct: 408 IDIEDLRARLATRLPAYMVPSRFVRLDALPLTPNGKIDRKAL 449
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 179 bits (456), Expect = 6e-46
Identities = 115/405 (28%), Positives = 189/405 (46%), Gaps = 44/405 (10%)
Query: 1 MQDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAY 60
MQ Y L + +L KT SF + EF +++ LVV ++ ++ +
Sbjct: 687 MQQAYGLGVGDTVLQKTPFSFDVSVWEFFWPLMSGARLVVAAP-GDHRDPAKLVELINRE 745
Query: 61 SISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILN 120
+ L VPS+ L A ++ +SL+ +V SGE LP + + P + N
Sbjct: 746 GVDTLHFVPSM----LQAFLQDEDVASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYN 801
Query: 121 LYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD-TVKPD--EGEI 177
LYG TE + D T++ C SVPIG PI+N +++++ P GE+
Sbjct: 802 LYGPTEAAIDVTHWTCVE-------EGGDSVPIGRPIANLACYILDANLEPVPVGVLGEL 854
Query: 178 YAGGLCLSNGY-----FSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSG 232
Y G L+ GY + F+PS +V G + Y RTGD AR G
Sbjct: 855 YLAGRGLARGYHGRPGLTAERFVPSPFVA-------------GERMY-RTGDLARYRADG 900
Query: 233 DLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEK 292
+ + GR D +K+ G R+ L EIE L HP V + AV++ + LV ++VL+ +
Sbjct: 901 VIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVDGKQ----LVGYVVLESE 956
Query: 293 KTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHD 352
+ ++K+ +++ LP M+P +++ ++ LP+T +GK+D +L A + +
Sbjct: 957 GGD---WREALKAHLAASLPEYMVPAQWLALERLPLTPNGKLDRKALPAPEASVAQQGYV 1013
Query: 353 ADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHV 397
A L + + + L VE V DNFF +GG+SI + V
Sbjct: 1014 APRN---ALERTLAAIWQDVLGVERVGLDDNFFELGGDSIVSIQV 1055
|
Length = 5163 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 6e-46
Identities = 84/265 (31%), Positives = 127/265 (47%), Gaps = 44/265 (16%)
Query: 89 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFD-CKRLPSILEMST 147
+ L+ L++ G+VL + + P + ++N YG TE T F C + + E +
Sbjct: 240 AGLRQLLVGGDVLSPAHVRRVLAACPGLRLINGYGPTE----NTTFSTCHVITRLDEAAD 295
Query: 148 LKSVPIGLPISNCDI-VLVESDTVKPD--EGEIYAGGLCLSNGY----------FSESTF 194
S+PIG PI N + +L E P GE+Y GG L+ GY F F
Sbjct: 296 --SIPIGRPIPNTTVYILDEEGQPVPIGVPGELYVGGDGLALGYLNRPELTAERFVPDPF 353
Query: 195 MPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALE 254
P E +RTGD AR G++ FLGR DR +KI G R+ L
Sbjct: 354 GPGE-------------------RLYRTGDLARWRPDGNIEFLGRIDRQVKIRGFRIELG 394
Query: 255 EIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLA 314
EIE L HP V + AV+ + LVA++V + ++E +++ ++ +LP
Sbjct: 395 EIEQALLQHPGVREAAVLVREDAAGDKRLVAYVVARGALDAAE-----LRAHLAERLPAY 449
Query: 315 MIPNRFVFMDSLPMTSSGKVDYASL 339
M+P FV +D LP+T++GKVD +L
Sbjct: 450 MVPAAFVVLDELPLTANGKVDRRAL 474
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 7e-46
Identities = 89/291 (30%), Positives = 145/291 (49%), Gaps = 35/291 (12%)
Query: 57 LQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNI 116
+Q + ++ +VP+LM ++L + + SL+L++LSG+ +PL + + L P
Sbjct: 213 VQRHGVTVWNSVPALMDMLLTYAEDAA--RLLPSLRLVMLSGDWIPLDLPRRLRALAPGA 270
Query: 117 SILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI-VLVESDTVKPD-- 173
+++L G+TE S Y+ + +S+P G P+ N VL E PD
Sbjct: 271 RLVSLGGATEASIWSIYYPIDDVDPDW-----RSIPYGKPLPNQKFYVLDEDGRDCPDWV 325
Query: 174 EGEIYAGGLCLSNGYF-----SESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARR 228
GE+Y GG+ ++ GY+ + F+ H G + Y RTGD R
Sbjct: 326 PGELYIGGVGVALGYWGDPELTAERFIT------HRT---------GERLY-RTGDLGRY 369
Query: 229 IQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIV 288
G + FLGR D +KI G R+ L EIE L HP V VV G L AF+V
Sbjct: 370 RPDGTIEFLGRADHQVKIRGYRVELGEIEAALARHPGVQRAVVVVVGDGGAKA-LAAFVV 428
Query: 289 LKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASL 339
++ + + + +++ ++ LP M+P+RFV +D+LP+T++GKVD +L
Sbjct: 429 AED---GAAVDAAVLRAALAELLPAYMVPSRFVVLDALPLTANGKVDRKAL 476
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 5e-45
Identities = 84/281 (29%), Positives = 129/281 (45%), Gaps = 32/281 (11%)
Query: 1 MQDLYPLHGEELLLFKTSISFIDH-LQEFLSAILTACTLVVPPIIELKKNLISIIHFLQA 59
+ Y L ++ +L S+SF D ++E A+L TLVVPP E + + + +
Sbjct: 152 LARRYGLDPDDRVLQFASLSF-DASVEEIFGALLAGATLVVPPEDEERDDAALLAALIAE 210
Query: 60 YSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISIL 119
+ ++ L PSL+ ++ AL +SL+L++L GE L ++ D P ++
Sbjct: 211 HPVTVLNLTPSLLALLAAALPPA-----LASLRLVILGGEALTPALVDRWRARGPGARLI 265
Query: 120 NLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVK-PD--EGE 176
NLYG TE + T + E VPIG P++N + +++ D P GE
Sbjct: 266 NLYGPTETTVWSTATLVDPDDAPRE----SPVPIGRPLANTRLYVLDDDLRPVPVGVVGE 321
Query: 177 IYAGGLCLSNGYF-----SESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS 231
+Y GG ++ GY + F+P + +RTGD R +
Sbjct: 322 LYIGGPGVARGYLNRPELTAERFVPDPFA------------GGDGARLYRTGDLVRYLPD 369
Query: 232 GDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVV 272
G+L FLGR D +KI G R+ L EIE L HP V AVV
Sbjct: 370 GNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPG-VREAVV 409
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 5e-45
Identities = 102/408 (25%), Positives = 180/408 (44%), Gaps = 39/408 (9%)
Query: 1 MQDLYPLHGEELLLFKTSISF-IDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQA 59
+ + L ++ +L ++ +F + + F + A ++PP + ++ + +
Sbjct: 688 IAERLQLAADDSMLMVSTFAFDLGVTELFGALASGATLHLLPP--DCARDAEAFAALMAD 745
Query: 60 YSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISIL 119
++ L VPS ++ +L A + +P + LV GE L + + + L P ++
Sbjct: 746 QGVTVLKIVPSHLQALLQASRVA----LPRPQRALVCGGEALQVDLLARVRALGPGARLI 801
Query: 120 NLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD---TVKPDEGE 176
N YG TE + + ++ +VPIG P++N + +++ GE
Sbjct: 802 NHYGPTETTVGVSTYELSDEER-----DFGNVPIGQPLANLGLYILDHYLNPVPVGVVGE 856
Query: 177 IYAGGLCLSNGY-----FSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS 231
+Y GG L+ GY + F+P + +RTGD AR
Sbjct: 857 LYIGGAGLARGYHRRPALTAERFVPDPF-------------GADGGRLYRTGDLARYRAD 903
Query: 232 GDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKE 291
G + +LGR D +KI G R+ L EIE L P V + V++ L LVA++V
Sbjct: 904 GVIEYLGRMDHQVKIRGFRIELGEIEARLLAQPGVREAVVLAQPGDAGL-QLVAYLVPAA 962
Query: 292 KKTSSE--IFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISA 349
+E +K+ + LP M+P + +DSLP+T +GK+D +L + + A
Sbjct: 963 VADGAEHQATRDELKAQLRQVLPDYMVPAHLLLLDSLPLTPNGKLDRKALPKPDASAVQA 1022
Query: 350 QHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHV 397
A +T +L + + + L VE V DNFF +GG+S+ A V
Sbjct: 1023 TFVAPQT---ELEKRLAAIWADVLKVERVGLTDNFFELGGHSLLATQV 1067
|
Length = 3956 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 6e-45
Identities = 118/413 (28%), Positives = 198/413 (47%), Gaps = 44/413 (10%)
Query: 1 MQDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAY 60
Q+ Y L +++L TS +F + E ++ LV+ P ++ +I ++
Sbjct: 1750 TQEAYQLSAADVVLQFTSFAFDVSVWELFWPLINGARLVIAPP-GAHRDPEQLIQLIERQ 1808
Query: 61 SISRLTTVPSLMRVVLPALQSQHNMHV--PSSLKLLVLSGEVLPLSMWDIISKLFPNISI 118
++ L VPS+++ +L Q + V P SL+ +V GE L + + P+ +
Sbjct: 1809 QVTTLHFVPSMLQQLL-----QMDEQVEHPLSLRRVVCGGEALEVEALRPWLERLPDTGL 1863
Query: 119 LNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDE---- 174
NLYG TE + D T++ C+R ++ SVPIG PI+N ++++ ++ P
Sbjct: 1864 FNLYGPTETAVDVTHWTCRRK----DLEGRDSVPIGQPIANLSTYILDA-SLNPVPIGVA 1918
Query: 175 GEIYAGGLCLSNGY-----FSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRI 229
GE+Y GG+ L+ GY + F+ + + GS+ Y RTGD AR
Sbjct: 1919 GELYLGGVGLARGYLNRPALTAERFVADPFGTV------------GSRLY-RTGDLARYR 1965
Query: 230 QSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIV- 288
G + +LGR D +KI G R+ L EIE LR V + V++ LVA++V
Sbjct: 1966 ADGVIEYLGRIDHQVKIRGFRIELGEIEARLREQGGVREAVVIAQDGANG-KQLVAYVVP 2024
Query: 289 ----LKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTS 344
L + + + +K+ + + LP M+P VF+ +P+T +GK+D +L A +
Sbjct: 2025 TDPGLVDDDEAQVALRAILKNHLKASLPEYMVPAHLVFLARMPLTPNGKLDRKALPAPDA 2084
Query: 345 FTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHV 397
S A S+L Q + + L +E+V HDNFF +GG+SI + V
Sbjct: 2085 ---SELQQAYVAPQSELEQRLAAIWQDVLGLEQVGLHDNFFELGGDSIISIQV 2134
|
Length = 3956 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 3e-44
Identities = 79/321 (24%), Positives = 132/321 (41%), Gaps = 43/321 (13%)
Query: 24 HLQEFLSAILTA----CTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPAL 79
H+ S +L A T+V+ + + +I + Y ++ L VP+L + A
Sbjct: 52 HVVGGGSGLLGALLAGGTVVLYEGFPFPLSFLELI---EQYRVTVLFGVPTLYDALAKAA 108
Query: 80 QSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRL 139
+ + + SSL+LL+ GE L + + + P IL YG TE S +
Sbjct: 109 EDRG--YDLSSLRLLISGGEPLSPELLERFEER-PGAPILEGYGLTETSVVTSTN----- 160
Query: 140 PSILEMSTLKSVPIGLPISNCDIVLV--ESDTVKPDE-GEIYAGGLCLSNGYFSESTFMP 196
+ K +G P+ ++ +V E + P E GE+ G + GY P
Sbjct: 161 ---PDSELKKPGTVGRPVPGVEVRVVDEEGKPLPPGEVGELVVRGPWVMKGY----WNNP 213
Query: 197 --SEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALE 254
+ + ++RTGD + G L GR IK+ G+ +
Sbjct: 214 PETTAAATEDG-------------WYRTGDLGYLDEEGYLYITGRSKDLIKVGGENVYPA 260
Query: 255 EIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLA 314
E+E L HP V + AVV + +VAF+VL+ + +K+ + +L
Sbjct: 261 EVESVLLQHPAVAEAAVVGVPDEDRGERIVAFVVLRPGADALA---EELKAHLRERLAPY 317
Query: 315 MIPNRFVFMDSLPMTSSGKVD 335
+P F+D LP T+SGK+D
Sbjct: 318 KVPRVIEFVDELPKTASGKID 338
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 3e-44
Identities = 71/279 (25%), Positives = 123/279 (44%), Gaps = 37/279 (13%)
Query: 1 MQDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAY 60
+ + + L + +L + F + E +L TLV+ P L + + ++ Y
Sbjct: 163 LAERFGLTPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARL--LDLIEKY 220
Query: 61 SISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILN 120
++ L VP+L+R++L A + + + SSL+L++ GE LP + + + F + ++N
Sbjct: 221 KVTVLYGVPTLLRLLLKAPEEKK--YDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVN 278
Query: 121 LYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDT--VKPDE-GEI 177
YG TE + T +K IG P+ ++ +++ + V P E GE+
Sbjct: 279 GYGPTETTVVATANLP-------GDPEVKPGSIGRPLPGVEVKVLDEEGEPVPPGEVGEL 331
Query: 178 YAGGLCLSNGYF-----SESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSG 232
G ++ GY + F+ + +RTGD R + G
Sbjct: 332 CIRGPGVARGYLNDPELTAERFVEDGWG------------------MYRTGDLGRWDEDG 373
Query: 233 DLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV 271
L LGRKD +KI G+R+ EIE L HP V + AV
Sbjct: 374 YLEILGRKDDQVKIRGERIEPGEIEAVLLEHPGVAEAAV 412
|
Length = 412 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 4e-44
Identities = 100/349 (28%), Positives = 150/349 (42%), Gaps = 45/349 (12%)
Query: 1 MQDLYPLHGEELLLFKTSISF-IDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQA 59
M L + LL T+ISF I L+ L + A ++ E ++ + +
Sbjct: 125 MARRPGLGASDRLLAVTTISFDISVLELLLPLLSGATVVIASA--ETVRDPERLARLIAD 182
Query: 60 YSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISIL 119
I+ + P+ R++L A SL L GE LP + + +L + L
Sbjct: 183 ERITIMQATPATWRMLLAAGWRG-----RESLTALC-GGEALPRDLAE---RLLSTGAEL 233
Query: 120 -NLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD--TVKPDE-G 175
N+YG TE + C R+ + V IG PI+N + +++ D V P G
Sbjct: 234 WNMYGPTET---TIWSTCARV-----TAADGPVTIGRPIANTQVYVLDEDLQPVPPGVPG 285
Query: 176 EIYAGGLCLSNGYF-----SESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQ 230
E+Y GG ++ GY + F+P + +RTGD R
Sbjct: 286 ELYIGGDGVARGYLGRPELTAERFVPDPF-------------DDPGGRLYRTGDLVRWRP 332
Query: 231 SGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLK 290
G L +LGR D +KI G R+ L EIE LR HP V D VV + LVA++V K
Sbjct: 333 DGRLEYLGRADDQVKIRGFRIELGEIEAALRAHPGVADAVVVVREEGPGDQRLVAYVVPK 392
Query: 291 EKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASL 339
L ++ + + LP M+P FV +D LP+T +GKVD +L
Sbjct: 393 AGAAPDAEAL---RAALRATLPAYMVPAAFVQLDELPLTPNGKVDRKAL 438
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 166 bits (421), Expect = 2e-43
Identities = 84/317 (26%), Positives = 143/317 (45%), Gaps = 33/317 (10%)
Query: 28 FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHV 87
L+ +L TLV+ + ++ ++ Y ++ L+ VP+ +R +L + +
Sbjct: 233 LLAPLLGGGTLVLLS--PEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDL- 289
Query: 88 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMST 147
SSL+L++ G LP + + + F I+IL YG TE S T +L
Sbjct: 290 SSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVT---INPPDDLLAKPG 346
Query: 148 LKSVPIGLPISNCDIVLVESDTVKP---DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHN 204
+G P+ ++ +V+ D + + GEI+ G + GY++ P + +
Sbjct: 347 S----VGRPLPGVEVRIVDPDGGEVLPGEVGEIWVRGPNVMKGYWN----RPEATAEAFD 398
Query: 205 NSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHP 264
+ RTGD + G L +GR I G+ + EEIE L HP
Sbjct: 399 ED-----------GWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHP 447
Query: 265 DVVDTAVVSHKHQ--GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 322
V + AVV + GE V VA +VLK +E+ +++++ +L L +P VF
Sbjct: 448 AVAEAAVVGVPDERWGERV--VAVVVLKP-GGDAELTAEELRAFLRKRLALYKVPRIVVF 504
Query: 323 MDSLPMTSSGKVDYASL 339
+D LP T+SGK+D +L
Sbjct: 505 VDELPRTASGKIDRRAL 521
|
Length = 534 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 167 bits (424), Expect = 3e-42
Identities = 117/444 (26%), Positives = 200/444 (45%), Gaps = 47/444 (10%)
Query: 1 MQDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVV-PPIIELKKNLISIIHFLQA 59
MQ+ YPL ++++L KT SF + EF + LV+ P E ++ +++ F
Sbjct: 630 MQNHYPLTADDVVLQKTPCSFDVSVWEFFWPFIAGAKLVMAEP--EAHRDPLAMQQFFAE 687
Query: 60 YSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISIL 119
Y ++ VPS++ + +L + +SL+ + SGE LP + +L +
Sbjct: 688 YGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLCREWQQLT-GAPLH 746
Query: 120 NLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVES--DTVKPD-EGE 176
NLYG TE + D +++ L SVPIG P+ N + ++++ V P G+
Sbjct: 747 NLYGPTEAAVDVSWYPAF--GEELAAVRGSSVPIGYPVWNTGLRILDARMRPVPPGVAGD 804
Query: 177 IYAGGLCLSNGY-----FSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS 231
+Y G+ L+ GY + S F+ + G + Y RTGD AR +
Sbjct: 805 LYLTGIQLAQGYLGRPDLTASRFIADPFAP-------------GERMY-RTGDVARWLDD 850
Query: 232 GDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDV---VDTAVV---SHKHQGELVILVA 285
G + +LGR D +KI GQR+ L EI+ ++ PDV V A V + G+ LV
Sbjct: 851 GAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVG 910
Query: 286 FIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSF 345
++V + + S++++ + +LP M+P + +D LP++++GK+D +L
Sbjct: 911 YLVSQSGLP---LDTSALQAQLRERLPPHMVPVVLLQLDQLPLSANGKLDRKALPLPE-L 966
Query: 346 TISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNLGIDM 405
A +T +I AF L + V +FF +GG+S+ A +A L
Sbjct: 967 KAQVPGRAPKTGTE---TIIAAAFSSLLGCDVVDADADFFALGGHSLLAMKLAAQLSRQF 1023
Query: 406 RL------IYNFPTPSKLEIALLE 423
+ T +KL L
Sbjct: 1024 ARQVTPGQVMVASTVAKLATLLDA 1047
|
Length = 1296 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 164 bits (416), Expect = 5e-41
Identities = 106/438 (24%), Positives = 185/438 (42%), Gaps = 57/438 (13%)
Query: 1 MQDLYPLHGEELLLFKTSISF-IDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQA 59
+ Y L ++ +L S SF H + I A ++ + + L + IH
Sbjct: 4726 TGERYELTPDDRVLQFMSFSFDGSHEGLYHPLINGASVVIRDDSLWDPERLYAEIH---E 4782
Query: 60 YSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISIL 119
+ ++ L P ++ + + P SL++ GE + + +D+ + + +
Sbjct: 4783 HRVTVLVFPPVYLQQLAEHAERDGE---PPSLRVYCFGGEAVAQASYDLAWRALKPVYLF 4839
Query: 120 NLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDE----G 175
N YG TE + + + + +PIG P+ N +++ + P G
Sbjct: 4840 NGYGPTETTVTVLLWKARDG----DACGAAYMPIGTPLGNRSGYVLD-GQLNPLPVGVAG 4894
Query: 176 EIYAGGLCLSNGYF-----SESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQ 230
E+Y GG ++ GY + F+P + G + Y RTGD AR
Sbjct: 4895 ELYLGGEGVARGYLERPALTAERFVPDPFGAP------------GGRLY-RTGDLARYRA 4941
Query: 231 SGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVV----SHKHQGELVILVAF 286
G + +LGR D +KI G R+ L EIE LR HP V + V+ + Q LV +
Sbjct: 4942 DGVIDYLGRVDHQVKIRGFRIELGEIEARLREHPAVREAVVIAQEGAVGKQ-----LVGY 4996
Query: 287 IV-----LKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSA 341
+V L + + +K+ + +LP M+P VF+ +P+T +GK+D +L
Sbjct: 4997 VVPQDPALADADEAQAELRDELKAALRERLPEYMVPAHLVFLARMPLTPNGKLDRKALPQ 5056
Query: 342 STSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAA----AHV 397
S A S+L Q + + L +E V DNFF +GG+S+ A + +
Sbjct: 5057 ---PDASLLQQAYVAPRSELEQQVAAIWAEVLQLERVGLDDNFFELGGHSLLAIQVTSRI 5113
Query: 398 AHNLGIDM--RLIYNFPT 413
LG+++ R ++ PT
Sbjct: 5114 QLELGLELPLRELFQTPT 5131
|
Length = 5163 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 5e-36
Identities = 110/435 (25%), Positives = 189/435 (43%), Gaps = 53/435 (12%)
Query: 1 MQDLYPLHGEELLLFKTSISFIDHLQEFLSAILT-ACTLVVPPIIELKKNLISIIHFLQA 59
+ + Y L + +L S SF + FL ++ C +V + + L IH A
Sbjct: 3269 IAEAYELDANDRVLLFMSFSFDGAQERFLWTLICGGCLVVRDNDLWDPEELWQAIH---A 3325
Query: 60 YSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISIL 119
+ IS P+ L +SL + V GE +P + ++ + + +
Sbjct: 3326 HRISIACFPPAY----LQQFAEDAGGADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLT 3381
Query: 120 NLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDE----G 175
N YG TE T + C + PIG P++ I +++ + P G
Sbjct: 3382 NGYGPTEAVVTVTLWKC----GGDAVCEAPYAPIGRPVAGRSIYVLDGQ-LNPVPVGVAG 3436
Query: 176 EIYAGGLCLSNGYF-----SESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQ 230
E+Y GG+ L+ GY + F+ + G + Y RTGD AR
Sbjct: 3437 ELYIGGVGLARGYHQRPSLTAERFVADPFS------------GSGGRLY-RTGDLARYRA 3483
Query: 231 SGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLK 290
G + +LGR D +KI G R+ L EIE L HP V + V++ G LVA++V
Sbjct: 3484 DGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLARDGAGGKQ-LVAYVVPA 3542
Query: 291 EKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQ 350
+ + +++ +++ LP M+P + + + ++P+ +GKVD +L A+
Sbjct: 3543 DP---QGDWRETLRDHLAASLPDYMVPAQLLVLAAMPLGPNGKVDRKALP-----DPDAK 3594
Query: 351 HDADETKA--SDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHV------AHNLG 402
+ E A S++ Q + + L VE+V DNFF +GG+S+ A V + L
Sbjct: 3595 -GSREYVAPRSEVEQQLAAIWADVLGVEQVGVTDNFFELGGDSLLALQVLSRIRQSLGLK 3653
Query: 403 IDMRLIYNFPTPSKL 417
+ +R + + PT ++L
Sbjct: 3654 LSLRDLMSAPTIAEL 3668
|
Length = 3956 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 5e-36
Identities = 108/407 (26%), Positives = 182/407 (44%), Gaps = 46/407 (11%)
Query: 1 MQDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAY 60
MQ Y L ++L+ K ISF + E ++T C LV+ E ++ I +Q Y
Sbjct: 1305 MQATYALDDSDVLMQKAPISFDVSVWECFWPLITGCRLVLAGPGE-HRDPQRIAELVQQY 1363
Query: 61 SISRLTTVPSLMRVVL--PALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISI 118
++ L VP L+++ + P + SL+ L GE LP + + + + P + +
Sbjct: 1364 GVTTLHFVPPLLQLFIDEPLAAACT------SLRRLFSGGEALPAELRNRVLQRLPQVQL 1417
Query: 119 LNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISN--CDIVLVESDTVKPD-EG 175
N YG TE + + T++ C+ + PIG P+ N C ++ E + + P G
Sbjct: 1418 HNRYGPTETAINVTHWQCQ-------AEDGERSPIGRPLGNVLCRVLDAELNLLPPGVAG 1470
Query: 176 EIYAGGLCLSNGYF-----SESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQ 230
E+ GG L+ GY + F+P + G++ Y RTGD AR
Sbjct: 1471 ELCIGGAGLARGYLGRPALTAERFVPDPLGE------------DGARLY-RTGDRARWNA 1517
Query: 231 SGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLK 290
G L +LGR D+ +K+ G R+ EEI+ L P V AV+ E +
Sbjct: 1518 DGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVR----EGAAGAQLVGYY 1573
Query: 291 EKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQ 350
+ E +K+ ++++LP M+P + + +D +P+ SGK+D +L +
Sbjct: 1574 TGEAGQEAEAERLKAALAAELPEYMVPAQLIRLDQMPLGPSGKLDRRALPEPVWQQ--RE 1631
Query: 351 HDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHV 397
H T +L Q I + L + V D+FF +GG+S+ A +
Sbjct: 1632 HVEPRT---ELQQQIAAIWREVLGLPRVGLRDDFFALGGHSLLATQI 1675
|
Length = 4334 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 1e-34
Identities = 91/324 (28%), Positives = 143/324 (44%), Gaps = 46/324 (14%)
Query: 31 AILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVL--PALQSQHNMHVP 88
+ + TLV P ++ N + L I+ + PS + L P+ +H
Sbjct: 205 TLASGGTLVALPK-DMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNEEHL---- 259
Query: 89 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSI---LEM 145
+L + GE LP + + FP+ +I N YG TE + T SI EM
Sbjct: 260 PNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVT--------SIEITDEM 311
Query: 146 -STLKSVPIGLPISNCDIVLVESDTVK---PDEGEIYAGGLCLSNGYF-----SESTFMP 196
K +PIG + +++++ + K ++GEI G +S GY + F
Sbjct: 312 LDQYKRLPIGYAKPDSPLLIIDEEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFT 371
Query: 197 SEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEI 256
+ G Y TGD ++ G L + GR D IK+NG R+ LEEI
Sbjct: 372 FD----------------GQPAY-HTGDAGY-LEDGLLFYQGRIDFQIKLNGYRIELEEI 413
Query: 257 EHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSS-IKSWVSSKLPLAM 315
E LR V VV + ++ L+A++V KE+ E L+ IK + +L M
Sbjct: 414 EQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFEREFELTKAIKKELKERLMEYM 473
Query: 316 IPNRFVFMDSLPMTSSGKVDYASL 339
IP +F++ DSLP+T +GK+D +L
Sbjct: 474 IPRKFIYRDSLPLTPNGKIDRKAL 497
|
Length = 503 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (361), Expect = 2e-34
Identities = 111/415 (26%), Positives = 198/415 (47%), Gaps = 52/415 (12%)
Query: 1 MQDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAY 60
MQ Y L + +L T+ SF ++E +++ +V+ E ++ ++ + +
Sbjct: 3228 MQQAYGLGVGDRVLQFTTFSFDVFVEELFWPLMSGARVVLAGP-EDWRDPALLVELINSE 3286
Query: 61 SISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILN 120
+ L PS+++ L + + H +SLK +V GE LP D+ ++F + + N
Sbjct: 3287 GVDVLHAYPSMLQAFL----EEEDAHRCTSLKRIVCGGEALPA---DLQQQVFAGLPLYN 3339
Query: 121 LYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDE----GE 176
LYG TE + T++ C +VPIG PI+N +++ +++P GE
Sbjct: 3340 LYGPTEATITVTHWQCVE-------EGKDAVPIGRPIANRACYILD-GSLEPVPVGALGE 3391
Query: 177 IYAGGLCLSNGYF-----SESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS 231
+Y GG L+ GY + F+P +V G + Y RTGD AR
Sbjct: 3392 LYLGGEGLARGYHNRPGLTAERFVPDPFVP-------------GERLY-RTGDLARYRAD 3437
Query: 232 GDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKE 291
G + ++GR D +KI G R+ L EIE L HP V + V++ + LVA++V ++
Sbjct: 3438 GVIEYIGRVDHQVKIRGFRIELGEIEARLLEHPWVREAVVLAVDGRQ----LVAYVVPED 3493
Query: 292 KKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQH 351
+ ++K+ + + LP M+P +F++ +P+T +GK+D +L + + +
Sbjct: 3494 EAGDLR---EALKAHLKASLPEYMVPAHLLFLERMPLTPNGKLDRKALPRPDAALLQQDY 3550
Query: 352 DADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHV---AHNLGI 403
A ++L + + + L +E+V DNFF +GG+SI + V A GI
Sbjct: 3551 VA---PVNELERRLAAIWADVLKLEQVGLTDNFFELGGDSIISLQVVSRARQAGI 3602
|
Length = 5163 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 7e-34
Identities = 81/297 (27%), Positives = 123/297 (41%), Gaps = 48/297 (16%)
Query: 57 LQAYSISRLTTVPSLMRVVLPA--LQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFP 114
L I+ VP+ +L L + SL+ L +G LP + + FP
Sbjct: 87 LAKERITGFAGVPTTWAQLLRLDPLARED----FPSLRYLTNAGGALPAKTILQLRRAFP 142
Query: 115 NISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVP--IGLPISNCDIVLVESD--TV 170
+ + ++YG TE R + L L P IG I N ++ +V+ D
Sbjct: 143 DAKLFSMYGLTE---------AFRS-TYLPPEELDRRPDSIGKAIPNVELWVVDEDGNRC 192
Query: 171 KPDE-GEIYAGGLCLSNGYF--SEST---FMPSEYVKLHNNSICNCSVSCGSQTYFRTGD 224
P E GE+ G + GY+ E+T P + TGD
Sbjct: 193 APGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPG---------------EIVLYTGD 237
Query: 225 FARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQ--GELVI 282
R + G L F+GRKD IK G R++ EIE + HP V + AV+ G+
Sbjct: 238 LVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEVICAHPLVAEAAVIGVPDPLLGQ--A 295
Query: 283 LVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASL 339
+VA +V + ++ E + LP M+P VF+DSLP ++GKVD ++L
Sbjct: 296 IVAVVVSADGESLDE---KELLKHCRKHLPNYMVPAEIVFVDSLPKNANGKVDRSAL 349
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 2e-33
Identities = 114/426 (26%), Positives = 189/426 (44%), Gaps = 65/426 (15%)
Query: 18 SISFIDHLQEFLSAILTACTLVVPPIIELKKNLIS-----IIHFLQAYSISRLTTVPSLM 72
S SF + +FL+A L + + P N I+ ++ +QA I+ L +VPSL+
Sbjct: 3918 SQSFDISVWQFLAAPLFGARVEIVP------NAIAHDPQGLLAHVQAQGITVLESVPSLI 3971
Query: 73 RVVLPALQSQHNMHVP-SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDC 131
+ +L L+ ++ +GE +P + + +P I ++N YG E S D
Sbjct: 3972 QGMLA------EDRQALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDV 4025
Query: 132 TYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD-TVKP--DEGEIYAGGLCLSNGY 188
+F L + +PIG P N + L++ + P GE+ G + GY
Sbjct: 4026 AFF-----RVDLASTRGSYLPIGSPTDNNRLYLLDEALELVPLGAVGELCVAGTGVGRGY 4080
Query: 189 FSES-----TFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 243
+ F+P + + G + Y RTGD ARR G L ++GR D
Sbjct: 4081 VGDPLRTALAFVPHPFG------------APGERLY-RTGDLARRRSDGVLEYVGRIDHQ 4127
Query: 244 IKINGQRMALEEIEHTLRGHPDVVDTAV-----VSHKHQGELVILVAFIVLKEKKTSSEI 298
+KI G R+ L EIE L +V + AV V+ KH LV ++V + +
Sbjct: 4128 VKIRGYRIELGEIEARLHEQAEVREAAVAVQEGVNGKH------LVGYLVPHQTVLAQGA 4181
Query: 299 FLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDAD-ETK 357
L IK + ++LP M+P ++++D LP+ ++GK+D +L A I
Sbjct: 4182 LLERIKQRLRAELPDYMVPLHWLWLDRLPLNANGKLDRKALPA---LDIGQLQSQAYLAP 4238
Query: 358 ASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAH------NLGIDMRLIYNF 411
++L Q + + L VE V HDNFF +GG+S+ A +A + +R ++
Sbjct: 4239 RNELEQTLATIWADVLKVERVGVHDNFFELGGHSLLATQIASRVQKALQRNVPLRAMFEC 4298
Query: 412 PTPSKL 417
T +L
Sbjct: 4299 STVEEL 4304
|
Length = 4334 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 4e-32
Identities = 94/351 (26%), Positives = 161/351 (45%), Gaps = 36/351 (10%)
Query: 88 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMST 147
P ++++ GE +P + + + + + N YG TE + C+ +
Sbjct: 2260 PPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQ----DPCG 2315
Query: 148 LKSVPIGLPISNCDIVLVESD-TVKPDE--GEIYAGGLCLSNGYF-----SESTFMPSEY 199
VPIG + N ++++D + GE+Y GG L+ GY + F+P +
Sbjct: 2316 AAYVPIGRALGNRRAYILDADLNLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPF 2375
Query: 200 VKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHT 259
+ G + Y RTGD AR G + +LGR D +KI G R+ L EIE
Sbjct: 2376 S------------ASGERLY-RTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEAR 2422
Query: 260 LRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 319
L+ HP V + VV+ LVA++V ++E L+ +++W++++LP M+P
Sbjct: 2423 LQAHPAVREAVVVAQDGASG-KQLVAYVV---PDDAAEDLLAELRAWLAARLPAYMVPAH 2478
Query: 320 FVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVL 379
+V ++ LP+ +GK+D +L +S A L Q + + L VE+V
Sbjct: 2479 WVVLERLPLNPNGKLDRKALPKP---DVSQLRQAYVAPQEGLEQRLAAIWQAVLKVEQVG 2535
Query: 380 HHDNFFTMGGNSIAAAHVA----HNLGIDMRLIYNFPTPSKLEIALLEKKG 426
D+FF +GG+S+ A V +LG+++ L F P+ A + G
Sbjct: 2536 LDDHFFELGGHSLLATQVVSRVRQDLGLEVPLRILFERPTLAAFAASLESG 2586
|
Length = 5163 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 2e-31
Identities = 78/268 (29%), Positives = 122/268 (45%), Gaps = 27/268 (10%)
Query: 1 MQDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAY 60
+ L ++ +L S+SF + E A+L LV+ P L+ + +++ L+A
Sbjct: 398 AGARFGLDADDRVLALASLSFDASVFEIFGALLEGARLVLAPA-LLQVDPAALLELLEAQ 456
Query: 61 SISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLF-PNISIL 119
I+ L VP L+R++L A + + L+ L+ GE LPL++ + +L +L
Sbjct: 457 GITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLL 516
Query: 120 NLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI-VLVESDTVKPDE--GE 176
NLYG TE + D F VPIG P++N + +L + P GE
Sbjct: 517 NLYGPTEATLDAPSFPISAEL-------ESRVPIGRPVANTQLYILDQGLRPLPLGVPGE 569
Query: 177 IYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVF 236
+Y GL L+ GY + ++ + +RTGD AR + G L +
Sbjct: 570 LYIAGLGLALGYLNRPDLTAERFI---------------ALRLYRTGDLARPLADGALEY 614
Query: 237 LGRKDRTIKINGQRMALEEIEHTLRGHP 264
LGRKD +KI G R+ L EIE L P
Sbjct: 615 LGRKDSQVKIRGFRIELGEIEAALAEQP 642
|
Length = 642 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 6e-30
Identities = 85/292 (29%), Positives = 133/292 (45%), Gaps = 28/292 (9%)
Query: 57 LQAYSISRLTTVPSLMRVVL--PALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFP 114
L ++ + PS + + L P ++ H L + GE LP+ + + FP
Sbjct: 228 LPKTGLNVWVSTPSFVDMCLLDPNFNQENYPH----LTHFLFCGEELPVKTAKALLERFP 283
Query: 115 NISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGL--PISNCDIVLVESDTV-K 171
+I N YG TE + T + IL +PIG P N I+ E + + +
Sbjct: 284 KATIYNTYGPTEATVAVTSVKITQ--EIL--DQYPRLPIGFAKPDMNLFIMDEEGEPLPE 339
Query: 172 PDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS 231
++GEI G +S GY + P + + S Q +RTGD A I
Sbjct: 340 GEKGEIVIVGPSVSKGYLNN----PEKTAEAFF--------SHEGQPAYRTGD-AGTITD 386
Query: 232 GDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVI-LVAFIVLK 290
G L + GR D IK++G R+ LE+IE LR + VV ++ V L+A IV +
Sbjct: 387 GQLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPE 446
Query: 291 EKKTSSEIFLSS-IKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSA 341
+ E L+ IK + LP MIP +F++ D LP+T++GK+D +L+
Sbjct: 447 TEDFEKEFQLTKAIKKELKKSLPAYMIPRKFIYRDQLPLTANGKIDRKALAE 498
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 5e-28
Identities = 76/286 (26%), Positives = 124/286 (43%), Gaps = 34/286 (11%)
Query: 53 IIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKL 112
+ L+ Y ++ T P+ +R L L + SSL++L +GE L ++
Sbjct: 256 LWEALEKYKVTIFGTSPTFLRR-LMKLGLGEP-YDLSSLRVLGSAGEPLNPEAFEWFYSA 313
Query: 113 FPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV--ESDTV 170
+ IL++YG TE I +K+ GLP+ + V E + V
Sbjct: 314 L-GVWILDIYGQTETGM----------GFIAGRPPVKNGSSGLPLPGYAVRRVDDEGNPV 362
Query: 171 KPDEGEIYAGGL--CLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARR 228
P GE+ ++ Y+++ Y ++RTGD+A R
Sbjct: 363 PPGVGELVVRLPWPGMALTYWNDPERYKEAYFG----------------RWYRTGDWAER 406
Query: 229 IQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIV 288
+ G GR D IK++G+R+ EIE L HP V + AVV G+ I++AF+V
Sbjct: 407 DEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVV 466
Query: 289 LKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
L +E+ I+ V+ + IP + F+D LP T+SGK+
Sbjct: 467 LAAGVEPNEL-AEEIRRHVARNIGPHAIPRKIRFVDELPKTASGKI 511
|
Length = 528 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 2e-27
Identities = 93/332 (28%), Positives = 141/332 (42%), Gaps = 41/332 (12%)
Query: 89 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 148
+++ + GE L I + F N YG TE C P LE
Sbjct: 2448 LPVRMCITGGEALTGEHLQRIRQAFAPQLFFNAYGPTETV--VMPLAC-LAPEQLEEGA- 2503
Query: 149 KSVPIGLPIS-------NCDIVLVESDTVKPDEGEIYAGGLCLSNGY-----FSESTFMP 196
SVPIG + + D+ LV GE+Y GG L+ GY + F+
Sbjct: 2504 ASVPIGRVVGARVAYILDADLALVPQGAT----GELYVGGAGLAQGYHDRPGLTAERFVA 2559
Query: 197 SEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEI 256
+ + G + Y RTGD R G + ++GR D +KI G R+ L EI
Sbjct: 2560 DPFA------------ADGGRLY-RTGDLVRLRADGLVEYVGRIDHQVKIRGFRIELGEI 2606
Query: 257 EHTLRGHPDVVDTAVVSHKHQG--ELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLA 314
E L HP V + V++ +L + V + + ++K+ + +LP
Sbjct: 2607 ESRLLEHPAVREAVVLALDTPSGKQLAGYLVSAVAGQDDEAQAALREALKAHLKQQLPDY 2666
Query: 315 MIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALM 374
M+P + +DSLP+T++GK+D +L A A + S+L Q + + + L
Sbjct: 2667 MVPAHLILLDSLPLTANGKLDRRALPAP---DPELNRQAYQAPRSELEQQLAQIWREVLN 2723
Query: 375 VEEVLHHDNFFTMGGNSIAAAHV---AHNLGI 403
VE V DNFF +GG+SI + V A LGI
Sbjct: 2724 VERVGLGDNFFELGGDSILSIQVVSRARQLGI 2755
|
Length = 4334 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 1e-26
Identities = 77/271 (28%), Positives = 120/271 (44%), Gaps = 31/271 (11%)
Query: 68 VPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEV 127
VP+L +L A + SSL+L V +GE LP + +LF + IL+ GSTE+
Sbjct: 259 VPTLYAAMLAAPEKPE--RDLSSLRLCVSAGEALPAEIGYRWKELF-GLEILDGIGSTEM 315
Query: 128 SGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD--TVKPDE-GEIYAGGLCL 184
+ P ++ T G P+ ++ LV+ D V E GE++ G
Sbjct: 316 ----LHIFLSNRPGAVKYGT-----SGKPVPGYEVKLVDEDGEEVADGEIGELWVRGDSS 366
Query: 185 SNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTI 244
+ GY+ N G + RTGD R + G + GR D +
Sbjct: 367 AAGYW--------------NRREKTRETFVGE--WTRTGDKYYRDEDGYYWYCGRSDDML 410
Query: 245 KINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIK 304
K++G ++ E+E L HP V++ AVV + + L AF+VLK+ S + +K
Sbjct: 411 KVSGIWVSPFEVEDALLQHPAVLEAAVVGAEDEDGLTKPKAFVVLKDGYQPSPELETELK 470
Query: 305 SWVSSKLPLAMIPNRFVFMDSLPMTSSGKVD 335
+V KL P F+D LP T++GK+
Sbjct: 471 DFVKDKLAPYKYPRWIEFVDELPKTATGKIQ 501
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-25
Identities = 80/315 (25%), Positives = 125/315 (39%), Gaps = 41/315 (13%)
Query: 28 FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHV 87
L+++ TLV+ + L ++ I+ L VP++ AL +
Sbjct: 62 VLASLTAGATLVLMEKFDPGAAL----RLIERERITALHGVPTMFI----ALLEHPDFDK 113
Query: 88 P--SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEM 145
SSL+ + G +P + I + FP I YG TE SG T
Sbjct: 114 FDLSSLRTGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPG 173
Query: 146 STLKSVPIGLPISNCDIVLVESDT--VKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKL 202
+ G P+ ++ +V+ D V P E GEI G + GY++ P +
Sbjct: 174 TV------GRPLPGVEVKIVDPDGGEVPPGEVGEICVRGYSVMKGYYN----DPEATAEA 223
Query: 203 HNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRG 262
+ + TGD + G L +GR I G+ + EIE L
Sbjct: 224 I-----------DADGWLHTGDLGYMDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLT 272
Query: 263 HPDVVDTAVVS--HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 320
HP V + AVV + GE+V AF+VLK T +E + ++ +L +P
Sbjct: 273 HPAVAEAAVVGVPDERLGEVV--AAFVVLKPGATLTE---EELIAFCRGRLARFKVPRYV 327
Query: 321 VFMDSLPMTSSGKVD 335
F+D LP T+SGK+
Sbjct: 328 RFVDELPRTASGKIQ 342
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 3e-25
Identities = 71/311 (22%), Positives = 133/311 (42%), Gaps = 40/311 (12%)
Query: 29 LSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVP 88
L+ +L ++V PP K + + Y ++ + VP++ +++L + P
Sbjct: 63 LATLLAGGSVVCPP----KFSASKFWDDIAKYRVTWYSAVPTIHQILLKT-AKPNPGKPP 117
Query: 89 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 148
L+ + + LP ++ D + K F + +L YG TE + + L
Sbjct: 118 PRLRFIRSASAPLPPAVLDRLEKRF-GVPVLEAYGMTEAAHQIA-------SNPLPPLVR 169
Query: 149 KSVPIGLPISNCDIVLVESD--TVKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKLHNN 205
K +G P + ++ +++ D + P + GEI G ++ GY NN
Sbjct: 170 KPGSVGRP-AGVEVAILDDDGRPLPPGQEGEIVIRGPNVTAGYL--------------NN 214
Query: 206 SICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPD 265
N +FRTGD + G L GR I G++++ E+E L HP
Sbjct: 215 PEANREA--FRDGWFRTGDLGYLDEDGYLFLTGRIKELINRGGEKISPREVEEVLLRHPA 272
Query: 266 VVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFM 323
V + V V + GE V A +VL+ S++ + ++ + +L +P + +F+
Sbjct: 273 VAEAVVFGVPDELYGEEV--AAAVVLRAD---SKVTIEELRDFARKRLAAFKVPKKILFV 327
Query: 324 DSLPMTSSGKV 334
D+LP ++GK+
Sbjct: 328 DALPKGATGKI 338
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 9e-24
Identities = 81/322 (25%), Positives = 135/322 (41%), Gaps = 56/322 (17%)
Query: 28 FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVL-PALQSQHNMH 86
L A+L T+V+ ++ ++ VP+L+ + L A Q +
Sbjct: 200 LLGALLAGGTVVLHHPPSPD----VAFPLIEREKVTHTALVPALLNLWLEAAEWDQAD-- 253
Query: 87 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMS 146
SSL+++ + G L + + + + ++G E + T D P + M
Sbjct: 254 -LSSLRVIQVGGAPLSPELARRVEERL-GCPLQQVFGMAEGLVNYTRLD--DPPDV-IMR 308
Query: 147 TLKSVPIGLPISNCDIVLV--ESDTVKPD--EGEIYAGGLCLSNGYFS--ESTFMPSEYV 200
T G PIS D + + + P GE+ G GY+ E
Sbjct: 309 T-----QGRPISPADEIRIVDDQGEPVPPGEVGELLTRGPYTIRGYYRAPE--------- 354
Query: 201 KLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR-KDRTIKIN--GQRMALEEIE 257
HN + ++RTGD R G +GR KD +IN G++++ EEIE
Sbjct: 355 --HNAR------AFTDDGFYRTGDLVRIDADGYYRVVGRIKD---QINRGGEKISPEEIE 403
Query: 258 HTLRGHPDVVDTAVVSHKHQ--GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAM 315
+ L HP V D AVV + GE + AF+V + + L+ +++++ + LA
Sbjct: 404 NLLLSHPAVADAAVVGMPDEVLGERI--CAFVVPRGGAAPT---LAELRAFLREQ-GLAK 457
Query: 316 --IPNRFVFMDSLPMTSSGKVD 335
+P+R +DSLP+T GKVD
Sbjct: 458 FKLPDRLEVVDSLPLTPVGKVD 479
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 1e-22
Identities = 83/310 (26%), Positives = 132/310 (42%), Gaps = 48/310 (15%)
Query: 33 LTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPS-LMRVVLPALQSQHNMHVPSSL 91
L LV+P K + +I L+ + ++ ++ VP+ L R+ L+S SSL
Sbjct: 141 LAGGALVLPD----KFDAEAIAEALENHGVTHISLVPTQLQRL----LESLGA-RWLSSL 191
Query: 92 KLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSV 151
+ ++L G +P S+ + + I + YG TE + L ++ L SV
Sbjct: 192 RAVLLGGAPIPPSLLEQARQR--GIPLYPTYGMTETASQVA-----TLKPDDFLAKLGSV 244
Query: 152 PIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCS 211
G P+ ++ +V P +GEI G L GY L + +
Sbjct: 245 --GKPLPGRELRIVN-----PQDGEILVRGPSLFLGY-------------LPQGGL---T 281
Query: 212 VSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV 271
+F TGD G L LGR+D I G+ + EEIE L HP V + AV
Sbjct: 282 PPLDEDGWFHTGDLGYLDAEGYLYVLGRRDDLIISGGENIYPEEIEAVLLQHPAVEEAAV 341
Query: 272 V--SHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMT 329
V G+ VAF+V + S E ++++++ KL P R+ + LP
Sbjct: 342 VGVPDDEWGQRP--VAFVVPNDDPVSVE----ELQAFLADKLAKYKRPKRWYPLPELPRN 395
Query: 330 SSGKVDYASL 339
+SGK+D A+L
Sbjct: 396 ASGKIDRAAL 405
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 1e-21
Identities = 71/271 (26%), Positives = 120/271 (44%), Gaps = 27/271 (9%)
Query: 65 LTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGS 124
L VP+L R +L + + S++L V +GE LP + + ++ I IL+ GS
Sbjct: 186 LFGVPALYRALLESGAGS--APLFRSVRLCVSAGEALPAGLAERWAEAT-GIEILDGIGS 242
Query: 125 TEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPD-EGEIYAGGLC 183
TEV F R P T +P +V V G+++ G
Sbjct: 243 TEVL---HIFISNR-PGAARPGTTGRP---VPGYEARLVDESGREVPAGTVGDLWVRGPS 295
Query: 184 LSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 243
L+ GY++ +P + + + + RTGD R G + GR D
Sbjct: 296 LAPGYWN----LPEKTQRTLRDG------------WLRTGDRFSRDADGWYRYQGRADDM 339
Query: 244 IKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSI 303
IK++GQ ++ E+E L HP V + AVV+ + LV L AF+V + + ++ +
Sbjct: 340 IKVSGQWVSPLEVEAALGEHPAVAEAAVVAVPDEDGLVRLKAFVVPRPGEAIQQLLERDL 399
Query: 304 KSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
++ +L P + F+D+LP T++GK+
Sbjct: 400 HRFLRERLAPYKCPRQIEFLDTLPRTATGKL 430
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 1e-20
Identities = 47/123 (38%), Positives = 64/123 (52%), Gaps = 4/123 (3%)
Query: 219 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVS--HKH 276
+ TGD RR G L F GR D IK +G R+ EIE L HP V++ AVV
Sbjct: 317 WLLTGDLGRRDADGYLWFKGRADDVIKSSGYRIGPAEIEECLLKHPAVLEAAVVGVPDPE 376
Query: 277 QGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDY 336
+GE+V AF+VL E S+ + ++ V S+L P F+D LPMT++GK+
Sbjct: 377 RGEIV--KAFVVLAEGVEPSDELATELQELVKSRLAAHEYPREIEFVDELPMTTTGKIRR 434
Query: 337 ASL 339
L
Sbjct: 435 REL 437
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 1e-19
Identities = 74/304 (24%), Positives = 119/304 (39%), Gaps = 65/304 (21%)
Query: 56 FLQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMW----DIISK 111
++ + ++ L P+L+R + + H SSL++L +GE W + +
Sbjct: 188 IVERHKVTHLGLSPTLIRALRAHGDAPVEGHDLSSLRVLGSTGEPWDPESWLWLFERVGG 247
Query: 112 LFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSV-PIGL--PISNCDIVLVESD 168
I+N G TE+SG IL ++ + P P D +V+ D
Sbjct: 248 --GRAPIINYSGGTEISG-----------GILGNVPIRPIKPCSFNGPSPGMDADVVDED 294
Query: 169 --TVKPDEGEIYAGGLCLSN-------GYFSESTFMPSEYVKLHNNSICNCSVSCGSQTY 219
V+ + GE L + G++ + P Y++ TY
Sbjct: 295 GRPVRGEVGE-----LVVRAPWPGMTRGFWRD----PERYLE----------------TY 329
Query: 220 FRT-------GDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVV 272
+ GD+A + G LGR D TIK+ G+R+ EIE L HP V + A +
Sbjct: 330 WSRFPGVWVHGDWALVDEDGYWYILGRSDDTIKVAGKRVGPAEIESVLNSHPAVAEAAAI 389
Query: 273 SHKH--QGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTS 330
+GE +V F+VLK T S + + V L P F+ LP T
Sbjct: 390 GVPDPVKGE--AIVCFVVLKPGVTPSAALEAELADHVGDALGKPFRPREVHFVSDLPKTR 447
Query: 331 SGKV 334
+GK+
Sbjct: 448 NGKI 451
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 4e-19
Identities = 72/298 (24%), Positives = 116/298 (38%), Gaps = 50/298 (16%)
Query: 54 IHFLQAYSISRL--------TTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSM 105
+ L +S SR TV +L+ + L Q L + G LP ++
Sbjct: 151 LVLLPRFSASRFWDQVRKHGATVFNLLGAMAAILMKQPPSPDDRDHPLRFVFGAPLPAAI 210
Query: 106 WDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 165
W + F + ++ YG TE S G P ++ +V
Sbjct: 211 WPAFEERF-GVKLVEGYGMTETG--VPIIAP--GDPAPPGS------CGRPRPGVEVRIV 259
Query: 166 ESDT--VKPDE-GEIYAGGL---CLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTY 219
+ D V P E GE+ + GY+ MP K N +
Sbjct: 260 DEDGREVPPGEVGELVVRPRRPWAMFKGYYG----MPEATAKAWRNG------------W 303
Query: 220 FRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSHKHQ 277
F TGD RR + G L F+ RK I+ G+ ++ E+E + HP V + AV V +
Sbjct: 304 FHTGDRGRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPAVAEAAVVAVPSELG 363
Query: 278 GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV-FMDSLPMTSSGKV 334
+ V A +VL+ +T ++ + +LP M+P R++ F+D LP T + K+
Sbjct: 364 EDEV--KAVVVLRPGETLDP---EALLEFCRDRLPYFMVP-RYIEFVDELPKTPTEKI 415
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 5e-19
Identities = 45/128 (35%), Positives = 65/128 (50%), Gaps = 13/128 (10%)
Query: 217 QTYFR-------TGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDT 269
+TYF TGD ARR + G LGR D I ++G R+ E+E L HP V +
Sbjct: 455 KTYFSKFPGYYFTGDGARRDEDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEA 514
Query: 270 AVVSHKHQ--GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKL-PLAMIPNRFVFMDSL 326
AVV + GE + AF+ LK+ S+ +K V ++ P+A P+ +F+ L
Sbjct: 515 AVVGKPDEVKGE--AIYAFVTLKDGVEPSDELRKELKKHVRKEIGPIAT-PDEIIFVPGL 571
Query: 327 PMTSSGKV 334
P T SGK+
Sbjct: 572 PKTRSGKI 579
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 7e-19
Identities = 97/381 (25%), Positives = 163/381 (42%), Gaps = 84/381 (22%)
Query: 107 DIISK--------LFPNISILNLYGSTEVSGDCTYFDCKRL---PSILEMSTLKSV-PIG 154
DI++K L N+ I+N+YG+TE +YF+ + L+ LK V P G
Sbjct: 539 DILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLK--NLKDVMPAG 596
Query: 155 LPISNCDIVLV-ESDTVKP----DEGEIY--AGGLCLSNGY-----FSESTFMPSEYV-K 201
+ N +++V +D + + GEIY AGG L+ GY + F+ + +V
Sbjct: 597 KGMKNVQLLVVNRNDRTQTCGVGEVGEIYVRAGG--LAEGYLGLPELNAEKFVNNWFVDP 654
Query: 202 LHNNSICNCSVSCGSQTYF-------RTGDFARRIQSGDLVFLGRKDRTIKINGQRMALE 254
H + + + + RTGD R + G++ GR D +KI G R+ L
Sbjct: 655 SHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKIRGFRIELG 714
Query: 255 EIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSS------------ 302
EI+ L HP V + + + + E LV++IV ++K E F S
Sbjct: 715 EIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVK 774
Query: 303 -----------IKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISA-- 349
I+ ++ KLP IP V + LP+ +GKVD +L + ++A
Sbjct: 775 GLIKYRKLIKDIREYLKKKLPSYAIPTVIVPLKKLPLNPNGKVDKPALPFPDTAQLAAVA 834
Query: 350 ---QHDADETKASDLLQVIRKAFGHALMVEEVLHH--------DNFFTMGGNSIAAAHV- 397
A + + ++ + IR + E+L + D+FF +GG+SI A +
Sbjct: 835 KNRSASAADEEFTETEREIRDLW------LELLPNRPATISPDDSFFDLGGHSILATRMI 888
Query: 398 -----AHNLGIDMRLIYNFPT 413
N+ + + LI+ PT
Sbjct: 889 FELRKKLNVELPLGLIFKSPT 909
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. Length = 1389 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 9e-19
Identities = 66/287 (22%), Positives = 112/287 (39%), Gaps = 39/287 (13%)
Query: 53 IIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKL 112
++ + ++ ++ VP+ + +L +L+ ++L G +P + I
Sbjct: 189 LLEMIANERVTHISLVPTQLNRLLDEG------GHNENLRKILLGGSAIPAPL--IEEAQ 240
Query: 113 FPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKP 172
+ I YG TE T + L + + +G P++ +I + + K
Sbjct: 241 QYGLPIYLSYGMTETCSQVTTATPEMLHARPD--------VGRPLAGREIKIKVDN--KE 290
Query: 173 DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSG 232
GEI G L GY E Q +F TGD G
Sbjct: 291 GHGEIMVKGANLMKGYLY-----QGELTPAFEQ-----------QGWFNTGDIGELDGEG 334
Query: 233 DLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEK 292
L LGR+D I G+ + EEIE L HP + + VV + VA+IV +
Sbjct: 335 FLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSE-- 392
Query: 293 KTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASL 339
S+I + + ++++ KL +P F +D LP +SGK+ L
Sbjct: 393 ---SDISQAKLIAYLTEKLAKYKVPIAFEKLDELPYNASGKILRNQL 436
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 2e-18
Identities = 74/313 (23%), Positives = 128/313 (40%), Gaps = 40/313 (12%)
Query: 31 AILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS-QHNMHVPS 89
A++ V+P + + ++ ++ ++ VP++ +++L A ++ + S
Sbjct: 229 ALMAGAKQVIPRRFDPEN----LLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDF---S 281
Query: 90 SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLK 149
SL+L++ G LP ++ + F I ++ YG TE S + L K
Sbjct: 282 SLRLVIYGGAALPPALLREFKEKF-GIDLVQGYGMTETSPVVS---VLPPEDQLPGQWTK 337
Query: 150 SVPIGLPISNCDIVLVESD--TVKPDE---GEIYAGGLCLSNGYFSESTFMPSEYVKLHN 204
G P+ + +V+ D + PD GEI G L GY++ P + +
Sbjct: 338 RRSAGRPLPGVEARIVDDDGDELPPDGGEVGEIIVRGPWLMQGYWN----RPEATAETID 393
Query: 205 NSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHP 264
+ TGD + G L R I G+ + E+E L GHP
Sbjct: 394 GG------------WLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHP 441
Query: 265 DVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 322
V + AV V + GE VA +VLK T +++++ +L +P R F
Sbjct: 442 AVAEVAVIGVPDEKWGERP--VAVVVLKPGATLDA---KELRAFLRGRLAKFKLPKRIAF 496
Query: 323 MDSLPMTSSGKVD 335
+D LP TS GK+
Sbjct: 497 VDELPRTSVGKIL 509
|
Length = 521 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 2e-18
Identities = 69/259 (26%), Positives = 114/259 (44%), Gaps = 35/259 (13%)
Query: 89 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 148
SSLK++ G LP ++ + + L + YG TE + CT+F+
Sbjct: 199 SSLKVVGGGGAALPPAVAERLKALT-GLLYEEGYGLTE-THTCTHFNP--------PDRP 248
Query: 149 KSVPIGLPISNCDIVLVESDTVKP----DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHN 204
K +G+P+ D +++ +T + +EGEI G + GY++ P +
Sbjct: 249 KPQCLGIPVFGTDARVIDPETGEELPPGEEGEIVVRGPQVFKGYWNR----PEATAE--- 301
Query: 205 NSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHP 264
+ + +FRTGD + G FL R R I ++G ++ E+E L HP
Sbjct: 302 -----SFIELDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINVSGYKVWPAEVEALLYQHP 356
Query: 265 DVVDTAVVS--HKHQGELVILVAFIVLKE--KKTSSEIFLSSIKSWVSSKLPLAMIPNRF 320
V++ V+ +GE+V AF+VLK + +E I W ++ P
Sbjct: 357 AVLEVCVIGRPDPRRGEVV--KAFVVLKPDYRGKVTE---EDIIEWCRERMAAYKYPRII 411
Query: 321 VFMDSLPMTSSGKVDYASL 339
F+D LP T+SGKV + L
Sbjct: 412 EFVDELPKTASGKVLWRLL 430
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 88.3 bits (220), Expect = 3e-18
Identities = 77/317 (24%), Positives = 135/317 (42%), Gaps = 49/317 (15%)
Query: 28 FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVL--PALQSQHNM 85
L + T V+ P I+++ ++ Y + VP+L +L P + +++
Sbjct: 187 MLLGLRLGATNVLVP----NFRPINVLKEIKRYRFTIFPGVPTLYNALLNHPEFK-KYDF 241
Query: 86 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSG--DCTYFDCKRLPSIL 143
SSL+L + G LP+ + + + ++ YG TE S D +R
Sbjct: 242 ---SSLRLCISGGAPLPVEVAERFEEKT-GAPLVEGYGLTETSPVTTVNPLDGER----- 292
Query: 144 EMSTLKSVPIGLPISNCDIVLVESDT--VKPDE-GEIYAGGLCLSNGYFSESTFMPSEYV 200
K IGLP+ ++ +V+ + + P E GE+ G + GY++ P E
Sbjct: 293 -----KPGSIGLPLPGTEVKIVDDEGNELPPGEVGELVVRGPQVMKGYWN----RPEETA 343
Query: 201 KLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTL 260
++ + + RTGD + G + RK I + G + EIE L
Sbjct: 344 EVLTD------------GWLRTGDIGYMDEDGYFYIVDRKKDMIIVGGFNVYPREIEEVL 391
Query: 261 RGHPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 318
HP V++ AV V ++GE V AF+VLKE + +E + ++ +L +P
Sbjct: 392 YSHPAVLEAAVVGVPDPYRGEAV--KAFVVLKEGASLTE---EELIAFCRERLAAYKVPR 446
Query: 319 RFVFMDSLPMTSSGKVD 335
+ F D LP ++ GK+
Sbjct: 447 QVEFRDELPKSAVGKIL 463
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 3e-18
Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Query: 219 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKH-- 276
Y+ TGD ARR + G + GR D I ++G R+ EIE L HP V + AVV
Sbjct: 476 YYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDI 535
Query: 277 QGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKL-PLAMIPNRFVFMDSLPMTSSGKV 334
+G+ + AF+ LK+ + ++ V ++ P+A P++ F+ LP T SGK+
Sbjct: 536 KGQ--AIYAFVTLKDGYEPDDELRKELRKHVRKEIGPIAK-PDKIRFVPGLPKTRSGKI 591
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 1e-17
Identities = 76/321 (23%), Positives = 139/321 (43%), Gaps = 52/321 (16%)
Query: 29 LSAILTAC-----TLVVPPIIELKKNLISIIHFLQAYSISRLTTVPS-LMRVVLPALQSQ 82
L+ IL A T+VV P +L+K ++ I + Y ++ L VP ++ +V + +
Sbjct: 216 LTVILLALLRLGATVVVMPRFDLEK-FLAAI---EKYKVTHLPVVPPIVLALVKHPIVDK 271
Query: 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSI 142
+++ SSLK + L + + FP + + YG TE S T
Sbjct: 272 YDL---SSLKQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCP------- 321
Query: 143 LEMSTLKSVPIGLPISNCDIVLVESDTVKPD----EGEIYAGGLCLSNGYFS--ESTFMP 196
+ K +G + N + +V+ +T + GE++ G + GY + E+T
Sbjct: 322 VPEKDPKPGSVGRLVPNVEAKIVDPETGESLPPNQPGELWVRGPQVMKGYLNNPEAT--- 378
Query: 197 SEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEI 256
+ + + TGD + G L + R IK G ++A E+
Sbjct: 379 --------------AETIDKDGWLHTGDLGYFDEDGYLFIVDRLKELIKYKGFQVAPAEL 424
Query: 257 EHTLRGHPDVVDTAVVSHKHQ--GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKL-PL 313
E L HP++ D AV+ + + GE I +AF+V + SE + +V+ ++ P
Sbjct: 425 EALLLSHPEIADAAVIPYPDEEAGE--IPMAFVVRQPGSELSE---DEVMQFVAKQVAPY 479
Query: 314 AMIPNRFVFMDSLPMTSSGKV 334
+ + VF+D++P + SGK+
Sbjct: 480 KKV-RKVVFVDAIPKSPSGKI 499
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 2e-17
Identities = 88/297 (29%), Positives = 132/297 (44%), Gaps = 47/297 (15%)
Query: 146 STLKSVPIGLPISNCDIVLVESDTVKPDE--GEIYAGGLCLSNGYFSESTFMPSEYVKLH 203
S L S P IV +S V D GEI+A G +++GY+ +V+
Sbjct: 367 SVLMSCGRSQPGHAVLIVDPQSLEVLGDNRVGEIWASGPSIAHGYWRNPEASAKTFVEH- 425
Query: 204 NNSICNCSVSCGSQTYFRTGD--FARRIQSGDLVFLGR-KDRTIKINGQRMALEEIEHTL 260
+T+ RTGD F R G+L GR KD I + G + ++IE T+
Sbjct: 426 -----------DGRTWLRTGDLGFLRD---GELFVTGRLKDMLI-VRGHNLYPQDIEKTV 470
Query: 261 RGHPDVVD---TAVVSHKHQGELVILVAFIVLK--EKKTSSEIFLSSIKSWVSSKLPLAM 315
+VV A + HQGE I +A + + +K + + SI+ V+ A
Sbjct: 471 EREVEVVRKGRVAAFAVNHQGEEGIGIAAEISRSVQKILPPQALIKSIRQAVAEACQEA- 529
Query: 316 IPNRFVFMD--SLPMTSSGKV---------DYASLSASTSFTISAQHDADETKAS--DLL 362
P+ + ++ +LP TSSGK+ SL + F +A +T AS +L
Sbjct: 530 -PSVVLLLNPGALPKTSSGKLQRSACRLRLADGSLDSYALFPALQAVEAAQTAASGDELQ 588
Query: 363 QVIRKAFGHALMVEEVLHHDNFFTMGGNSIAA----AHVAHNLGIDM--RLIYNFPT 413
I + L VE+V D+FF +GGNSIAA A + LGID+ R ++ PT
Sbjct: 589 ARIAAIWCEQLKVEQVAADDHFFLLGGNSIAATQVVARLRDELGIDLNLRQLFEAPT 645
|
Length = 4334 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 4e-17
Identities = 70/320 (21%), Positives = 128/320 (40%), Gaps = 48/320 (15%)
Query: 29 LSAILTACTLVVPPIIELK-KNLIS-IIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMH 86
L+ + T+V+P + +++ ++ Y ++ L+ VP+++ +L Q
Sbjct: 63 LAPLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAALL---QVPLGDA 119
Query: 87 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCT--YFDCKRLPSILE 144
SSL+ + LP+ + + + ++ YG TE +G R
Sbjct: 120 DISSLRYALTGAAPLPVEVARRFEAV-TGVPVVEGYGMTEGTGVSAINPRGGPR------ 172
Query: 145 MSTLKSVPIGLPISNCDIVLVESDTVKPDE------GEIYAGGLCLSNGYFSESTFMPSE 198
SV + LP + + +++ + G + G + GY +++
Sbjct: 173 --RPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYLNDA------ 224
Query: 199 YVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR-KDRTIKINGQRMALEEIE 257
HN + TGD R G L GR KD I+ G + + IE
Sbjct: 225 ----HNAGARL------EDGWLNTGDLGRIDADGYLWLTGRAKDLIIR-GGHNIDPQMIE 273
Query: 258 HTLRGHPDVVDTAVVSH--KHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLP-LA 314
L HP V A V + GEL VA++ LK T +E + ++V +++P A
Sbjct: 274 EALLRHPAVALAAAVGRPDAYAGELP--VAYVQLKPGATVTE---GELLAFVKARIPERA 328
Query: 315 MIPNRFVFMDSLPMTSSGKV 334
+P +D+LP+T+ GK+
Sbjct: 329 AVPKAIYIIDALPLTAVGKI 348
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 81.7 bits (203), Expect = 1e-16
Identities = 72/323 (22%), Positives = 130/323 (40%), Gaps = 60/323 (18%)
Query: 28 FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVL--PALQSQHNM 85
L A+ T+V+ P K + +++ ++ + ++ VP++ + +L P ++++
Sbjct: 60 LLPALAAGGTVVLMP----KFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFA-RYDL 114
Query: 86 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYF---DCKRLPSI 142
SSL+L++ +P + + + F + + YG TE T D R
Sbjct: 115 ---SSLRLIIYGAAPMPAELKRAMIEWFGPV-FVQGYGMTETGPTTTLLSPEDWLRKLG- 169
Query: 143 LEMSTLKSVPIGLPISNCDIVLVESDT--VKPDE-GEIYAGGLCLSNGYF-----SESTF 194
SV G P+ ++ +V+ D + P E GEI G + GY+ +
Sbjct: 170 -------SV--GRPVPGVEVRIVDEDGRELPPGEVGEIVVRGPAVMAGYWNRPEATAEAL 220
Query: 195 MPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALE 254
+ TGD + G L + RK I G+ +
Sbjct: 221 ---------------------RDGWLHTGDLGYLDEDGYLYIVDRKKDMIISGGENIYPA 259
Query: 255 EIEHTLRGHPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLP 312
E+E+ L HP V D AV V + GE V VA +VL+ + + + ++ +L
Sbjct: 260 EVENVLLAHPAVADVAVIGVPDEEWGEAV--VAVVVLRP---GATLDAEELIAFCRERLA 314
Query: 313 LAMIPNRFVFMDSLPMTSSGKVD 335
+P F+D LP +SGK+
Sbjct: 315 GYKVPKSVEFVDELPRNASGKIL 337
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 2e-16
Identities = 69/265 (26%), Positives = 105/265 (39%), Gaps = 55/265 (20%)
Query: 89 SSLKLLVLSGEVLPLSMWDIISK-----LFPNISILNLYGSTEVSGDCTYFDCKRLPSIL 143
SSL+ + SG +MW K L PN+++++ G++E G S
Sbjct: 135 SSLRAISSSG-----AMWSPEVKQGLLELLPNLALVDALGASETGG---------GGSS- 179
Query: 144 EMSTL-KSVPIGLPISNCDIVLVESDT--VKPDEGEI--YAGGLCLSNGYF-----SEST 193
+S + G D V+++ D V P GE+ A G + GY+ + T
Sbjct: 180 -VSRAGGASATGKFELGPDTVVLDEDGSEVPPGSGEVGWIARGGRVPLGYYKDPEKTAKT 238
Query: 194 FMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMAL 253
F Y GDFAR G + LGR I G+++
Sbjct: 239 F-----------------REIDGVRYAVPGDFARVEADGTITLLGRGSVCINTGGEKVFP 281
Query: 254 EEIEHTLRGHPDVVDTAVVSHKHQ--GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKL 311
EE+E L+ HPDV D VV + G+ V VA + L+ L+ ++ L
Sbjct: 282 EEVEEALKAHPDVADALVVGVPDERWGQRV--VAVVQLRAGAGLD---LAELRDHCRQHL 336
Query: 312 PLAMIPNRFVFMDSLPMTSSGKVDY 336
+P V +D++P SGK DY
Sbjct: 337 AGYKLPRAIVVVDTVPRAPSGKADY 361
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 3e-16
Identities = 75/322 (23%), Positives = 142/322 (44%), Gaps = 51/322 (15%)
Query: 30 SAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVPS 89
+A + LV+P +L+ +I + ++ VP++ +L L++ N S
Sbjct: 225 AATMVGAKLVLPGRYLDPASLLDLI---EEEKVTVSAGVPTIWLGLLNYLEA--NGKDLS 279
Query: 90 SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMST-- 147
SL+ +V+ G LP S+ + + + + +++ +G TE S T + P ++++
Sbjct: 280 SLRRVVVGGSALPRSLIEKLEERG--VEVIHAWGMTETSPLGTV--SRLKPHLVDLPEEE 335
Query: 148 ---LKSVPIGLPISNCDIVLVESDTVK-P----DEGEIYAGGLCLSNGYF-SESTFMPSE 198
L++ G P+ ++ +V+ + + P GE+ G ++ Y+
Sbjct: 336 KLELRAK-QGRPVPGVELRIVDDEGNELPWDGKTVGELVVRGPWVTGSYYKDPEK----- 389
Query: 199 YVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT---IKINGQRMALEE 255
+ +FRTGD A + G ++ DR IK G+ ++ E
Sbjct: 390 ------------TEELTRDGWFRTGDVAVIDEDG---YIQITDRAKDVIKSGGEWISSVE 434
Query: 256 IEHTLRGHPDVVDTAVVSHKHQ--GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPL 313
+E+ L HP V + AVV H+ GE +A +VLK +E + ++ K+
Sbjct: 435 LENALMAHPAVAEAAVVGVPHEKWGERP--LAVVVLKPGAKVTE---EELLEHLAKKVAK 489
Query: 314 AMIPNRFVFMDSLPMTSSGKVD 335
+P+R VF+D +P TS GK D
Sbjct: 490 WWLPDRVVFVDEIPKTSVGKFD 511
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 3e-16
Identities = 75/318 (23%), Positives = 127/318 (39%), Gaps = 46/318 (14%)
Query: 29 LSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVL--PALQSQHNMH 86
L+ L + II K + + + ++ Y ++ L VP + + P + +
Sbjct: 205 LTTTLASLLCGATVIIMPKFDSETFLKLIEKYKVTSLFLVPPIAVALAKSPLVDK----Y 260
Query: 87 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMS 146
SSL+++ L + + + K FPN +I YG TE T
Sbjct: 261 DLSSLRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPATTLTP-------PGDE 313
Query: 147 TLKSVPIGLPISNCDIVLVESDT---VKPDE-GEIYAGGLCLSNGYFS--ESTFMPSEYV 200
SV G + N + +V+ D + P+E GE+ G + GY + E+T
Sbjct: 314 KPGSV--GRLVPNVEAKIVDEDGGKSLGPNERGELCVKGPQIMKGYLNNPEAT------- 364
Query: 201 KLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTL 260
+ + TGD + G+ + RK IK G ++ E+E L
Sbjct: 365 ----------KETIDEDGWLHTGDIGYFDEDGNFYIVDRKKELIKYKGYQVPPAELEAVL 414
Query: 261 RGHPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLA-MIP 317
HP V D AV + + GEL A++VLK +E +K +V+ K+ +
Sbjct: 415 LEHPKVADAAVIGIPDEVAGELP--RAYVVLKPGSKLTE---QEVKDYVAKKVAKYKQLR 469
Query: 318 NRFVFMDSLPMTSSGKVD 335
VF+D +P + SGK+
Sbjct: 470 GGVVFVDEIPKSPSGKIL 487
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 4e-16
Identities = 68/257 (26%), Positives = 109/257 (42%), Gaps = 43/257 (16%)
Query: 88 PSSLKLLVLSGEV-LPLSMWDIISKLFPNISILNLYGSTEVSGD--CTYFDCKRLPSILE 144
+L+L V SG LP+ + + + + ++L YG TE D +R P
Sbjct: 205 ARNLRLFV-SGSAALPVPVLERWEERTGH-TLLERYGMTETGMALSNPL-DGERRPG--- 258
Query: 145 MSTLKSVPIGLPISNCDIVLVESDTVKP----DEGEIYAGGLCLSNGYFSESTFMPSEYV 200
+V GLP+ ++ +V+ D +P + GEI G + + Y++ P
Sbjct: 259 -----TV--GLPLPGVEVRIVDEDGGEPLAAGEVGEIQVRGPNVFSEYWN----KPEATA 307
Query: 201 KLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR-KDRTIKINGQRMALEEIEHT 259
+ +F+TGD + G LGR D IK G +++ EIE
Sbjct: 308 EAFT-----------EDGWFKTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEA 356
Query: 260 LRGHPDVVDTAVVS--HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP 317
L HP V + AV+ GE V VA +V + + L+ +++W KL IP
Sbjct: 357 LLEHPGVAEVAVIGVPDPDWGEAV--VAVVVPEAGAA---LTLAELRAWAREKLAPYKIP 411
Query: 318 NRFVFMDSLPMTSSGKV 334
R + +D LP + GKV
Sbjct: 412 KRVIVVDELPRNAMGKV 428
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 2e-15
Identities = 66/255 (25%), Positives = 102/255 (40%), Gaps = 36/255 (14%)
Query: 88 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMST 147
L+ V +GE L + + + K + ++I + YG TE + +
Sbjct: 198 DVRLREAVSAGEPLNPEVIERVKKAW-GLTIRDGYGQTETTA---------MIGNSPGQK 247
Query: 148 LKSVPIGLPISNCDIVLVESDTVKP--DEGEI------YAGGLCLSNGYFSESTFMPSEY 199
+K +G P+ +VL++ + + EGEI GL L GY + +
Sbjct: 248 VKPGSMGRPLPGYRVVLLDDEGKEIPVTEGEIALDLGDRPIGLML--GYMGDPEKTAA-- 303
Query: 200 VKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHT 259
Y+RTGD A R + G L F+GR D K + R++ E+E
Sbjct: 304 -AFRGG-------------YYRTGDKAYRDEDGYLWFVGRADDVFKSSDYRISPFEVESA 349
Query: 260 LRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 319
L HP V + AVV L + A+IVLK S + + V +L R
Sbjct: 350 LLEHPAVAEAAVVPSPDPIRLAVPKAYIVLKPGYEPSRELALELFAHVRERLAPYKRIRR 409
Query: 320 FVFMDSLPMTSSGKV 334
F+ LP T SGK+
Sbjct: 410 IEFVGELPKTISGKI 424
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 79.8 bits (198), Expect = 3e-15
Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 13/127 (10%)
Query: 217 QTYFR-------TGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDT 269
+TYF TGD ARR + G GR D + ++G R+ EIE L HP V +
Sbjct: 475 KTYFSTFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEA 534
Query: 270 AVVS--HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKL-PLAMIPNRFVFMDSL 326
AVV +G+ + AF+ LK + S+ +++WV ++ P+A P+ F L
Sbjct: 535 AVVGRPDDIKGQGI--YAFVTLKGGEEPSDELRKELRNWVRKEIGPIA-KPDVIQFAPGL 591
Query: 327 PMTSSGK 333
P T SGK
Sbjct: 592 PKTRSGK 598
|
Length = 637 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 6e-15
Identities = 37/116 (31%), Positives = 55/116 (47%)
Query: 219 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQG 278
++ TGD A + + G F+GR D IK +G R+ E+E L HP V + AVV
Sbjct: 308 WYLTGDRAIKDEDGYFWFVGRADDVIKSSGYRIGPFEVESALIEHPAVAEAAVVGSPDPV 367
Query: 279 ELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
++ AF+VL SE ++ V + P F++ LP T SGK+
Sbjct: 368 RGEVVKAFVVLAPGYQPSEELAKELQEHVKKRTAPYKYPREIEFVEELPKTVSGKI 423
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 7e-15
Identities = 56/186 (30%), Positives = 82/186 (44%), Gaps = 15/186 (8%)
Query: 153 IGLPISNCDIVLVES--DTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNC 210
+G P+ + ++E D + P G G L L G+ S M Y L N
Sbjct: 262 MGRPLPGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPS----MFRGY--LGNEERYAS 315
Query: 211 SVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTA 270
S G ++ TGD A R + G F+GR D IK G + E+E L HP V +
Sbjct: 316 SFVDG---WYLTGDLAYRDEDGYFWFVGRADDVIKTAGHLVGPFEVESALMEHPAVAEAG 372
Query: 271 VVSHKHQ--GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPM 328
V+ GE+V AF+ L+ SE + ++ +L A+ P F+D+LP
Sbjct: 373 VIGKPDPVAGEIV--KAFVSLRPGFEPSEELRRELLTFARQRLGAAVAPREIHFVDNLPK 430
Query: 329 TSSGKV 334
T SGK+
Sbjct: 431 TRSGKI 436
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 2e-14
Identities = 66/255 (25%), Positives = 103/255 (40%), Gaps = 39/255 (15%)
Query: 88 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMST 147
L+L +GE LP + F + I++ GSTE+ + LP + T
Sbjct: 277 QVRLRLCTSAGEALPAEVGQRWQARF-GVDIVDGIGSTEM----LHIFLSNLPGDVRYGT 331
Query: 148 LKSVPIGLPISNCDIVLVE---SDTVKPDEGEIYAGGLCLSNGYF-----SESTFMPSEY 199
G P+ + LV D + GE+ G + Y+ + TF
Sbjct: 332 -----SGKPVPGYRLRLVGDGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTFQ---- 382
Query: 200 VKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHT 259
G T R+GD R G + GR D +K++G ++ EIE
Sbjct: 383 ---------------GEWT--RSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESA 425
Query: 260 LRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 319
L HP V++ AVV + + L+ AFIVL+ + + +K V +L P
Sbjct: 426 LIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTALETELKEHVKDRLAPYKYPRW 485
Query: 320 FVFMDSLPMTSSGKV 334
VF+D LP T++GK+
Sbjct: 486 IVFVDDLPKTATGKI 500
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 3e-14
Identities = 61/196 (31%), Positives = 89/196 (45%), Gaps = 42/196 (21%)
Query: 154 GLPISNCDIVLV---ESDTVKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICN 209
G P+S D V V + + V P E GE+ G GY+ HN +
Sbjct: 361 GRPLSPDDEVRVVDADGNPVAPGEVGELLTRGPYTIRGYYR---------APEHNARAFD 411
Query: 210 CSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDT 269
+ ++R+GD RR G LV GR I G+++A EE+E+ L HP V D
Sbjct: 412 ------ADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDA 465
Query: 270 AVVSHKHQ--GELVILVAFIVLKEKKTSS--------EIFLSSIKSWVSSKLPLAMIPNR 319
A+V+ + GE AFIV+KE + E L++ K +P+R
Sbjct: 466 ALVAMPDELLGEKS--CAFIVVKEPPLRAAQLRRFLRERGLAAFK-----------LPDR 512
Query: 320 FVFMDSLPMTSSGKVD 335
F+DSLP+T+ GK+D
Sbjct: 513 IEFVDSLPLTAVGKID 528
|
Length = 542 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 3e-14
Identities = 65/264 (24%), Positives = 113/264 (42%), Gaps = 36/264 (13%)
Query: 90 SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLK 149
SL+ L SG +P + + PN + +YG TE + TY + + +
Sbjct: 277 SLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTE-AFRSTYLPPEEVDR-------R 328
Query: 150 SVPIGLPISNCDIVLVESD--TVKPDE-GEIYAGGLCLSNGYFS--EST---F--MPSEY 199
IG I N +++++ D P E GE+ G ++ GY++ E T F +P
Sbjct: 329 PDSIGKAIPNAEVLVLREDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPFP 388
Query: 200 VKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHT 259
+LH + S GD RR + G L F+GR+D IK +G R++ E+E
Sbjct: 389 GELHLPELAVWS-----------GDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEV 437
Query: 260 LRGHPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP 317
V + V G+ ++LV E+ +++ + ++LP M+P
Sbjct: 438 AYATGLVAEAVAFGVPDPTLGQAIVLVV-----TPPGGEELDRAALLAECRARLPNYMVP 492
Query: 318 NRFVFMDSLPMTSSGKVDYASLSA 341
+LP ++GK+D +L+
Sbjct: 493 ALIHVRQALPRNANGKIDRKALAK 516
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase | Back alignment and domain information |
|---|
Score = 74.6 bits (183), Expect = 1e-13
Identities = 73/304 (24%), Positives = 131/304 (43%), Gaps = 46/304 (15%)
Query: 58 QAYSISRLTTVPSLMRVVL---PALQSQHNMHVPSSLKLLVLSGEVL--PLSMW--DIIS 110
+ Y + + + P+ +RV+ A +H++ SSL L L+GE L P + W D +
Sbjct: 323 ERYGVRTMFSAPTAIRVLKKQDAAWLRKHDL---SSLHWLFLAGEPLDEPTAHWITDGLG 379
Query: 111 KLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDT- 169
K +++ Y TE T + + L++ +K GLP+ + +++ T
Sbjct: 380 K-----PVIDNYWQTE-----TGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATG 429
Query: 170 --VKPDEGEIYA--GGL---CLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRT 222
P+E + L CLS + ++ F+ + + S + + +
Sbjct: 430 RPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYW-------------SHFKRPLYSS 476
Query: 223 GDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVI 282
D+ R + G LGR D I + G R+ EIE ++ HP V + AVV + + +
Sbjct: 477 FDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQV 536
Query: 283 LVAFIVLKEKKTSSE-----IFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYA 337
V F +LKE ++ + + + V +L P R F+ +LP T SGK+
Sbjct: 537 AVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKTRSGKLLRR 596
Query: 338 SLSA 341
S+ A
Sbjct: 597 SIQA 600
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 1e-13
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Query: 219 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVS--HKH 276
++ TGD R + G F+GR D I G R+ ++E L HP V + AVV
Sbjct: 318 WYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPFDVESALLEHPAVAEAAVVGVPDPL 377
Query: 277 QGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
+GE+V AF+VLKE S+ ++ +V +L P F+ +LP T SGK+
Sbjct: 378 RGEIV--KAFVVLKEGYAGSDELAEELQLFVKKRLSAHAYPREVEFVPALPKTPSGKI 433
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 1e-13
Identities = 58/195 (29%), Positives = 92/195 (47%), Gaps = 32/195 (16%)
Query: 154 GLPISNCDIVLVESDTVKP-DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSV 212
G P+S D V V D P GE G+ L+ G ++ + + HN + +
Sbjct: 354 GRPMSPDDEVRVVDDHGNPVAPGET---GMLLTRGPYTFRGYYKAPE---HNAAAFD--- 404
Query: 213 SCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVV 272
++ ++ TGD R G +V +GR I G+++A EEIE+ L HP V D A+V
Sbjct: 405 ---AEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALV 461
Query: 273 SHKHQ--GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAM------IPNRFVFMD 324
S + GE AFIV+++ ++K+ + +P+R F+D
Sbjct: 462 SMPDELLGEKS--CAFIVVRDP---------ALKAAQLRRFLRERGLAEYKLPDRVEFVD 510
Query: 325 SLPMTSSGKVDYASL 339
SLP+T+ GKVD +L
Sbjct: 511 SLPLTAVGKVDKKAL 525
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 2e-13
Identities = 79/305 (25%), Positives = 124/305 (40%), Gaps = 54/305 (17%)
Query: 53 IIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKL 112
I+ + ++ L + P +L + Q + SL+ +V+ G+ S++ K
Sbjct: 265 IVEMIDEAKVTFLGSTPVFFDYILKTAKKQES--CLPSLRFVVIGGDAFKDSLYQEALKT 322
Query: 113 FPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKP 172
FP+I + YG+TE S T S +G+PI D+++V +T P
Sbjct: 323 FPHIQLRQGYGTTECSPVITINT--------VNSPKHESCVGMPIRGMDVLIVSEETKVP 374
Query: 173 -DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS 231
GE GL L+ G T + S Y L + V G +T++ TGD +
Sbjct: 375 VSSGET---GLVLTRG-----TSLFSGY--LGEDFGQG-FVELGGETWYVTGDLGYVDRH 423
Query: 232 GDLVFLGRKDRTIKINGQRMALEEIEHTLR---GHPDVVDT-AVVSHKHQGELVILVAFI 287
G+L GR R +KI + ++LE +E L G +V GE V L F
Sbjct: 424 GELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEKVRLCLFT 483
Query: 288 -----------VLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDY 336
+LK KTSS + +S ++S+PM +GK DY
Sbjct: 484 TFPTSISEVNDILKNSKTSSILKISYHHQ-----------------VESIPMLGTGKPDY 526
Query: 337 ASLSA 341
SL+A
Sbjct: 527 CSLNA 531
|
Length = 539 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 2e-13
Identities = 54/220 (24%), Positives = 82/220 (37%), Gaps = 36/220 (16%)
Query: 121 LYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPI---GLPIS---NCDIVLVESDTVKPD- 173
LYGS+EV L ++ + SV I G P S + + PD
Sbjct: 325 LYGSSEVQA---------LVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDG 375
Query: 174 -EGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSG 232
GEI L GY L N +++ YFRTGD G
Sbjct: 376 ESGEIEIRAPSLMRGY-------------LDNPDATARALT--DDGYFRTGDLGYTRGDG 420
Query: 233 DLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEK 292
V+ R ++++ G + EIEH L P V VV G+ V VAF++ +
Sbjct: 421 QFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATRDGKTVP-VAFVIPTDG 479
Query: 293 KTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSG 332
+ E + + + L +P R +++ P+T S
Sbjct: 480 ASPDE---AGLMAACREALAGFKVPARVQVVEAFPVTESA 516
|
Length = 540 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 4e-13
Identities = 68/286 (23%), Positives = 121/286 (42%), Gaps = 37/286 (12%)
Query: 53 IIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKL 112
++ +Q + + L T P+ R +L +++ SSL+ V +GE LP +W +
Sbjct: 229 LLKAIQEHRATILFTAPTAYRAMLIKVKA----FDISSLRKCVSAGETLPAKVWQDWYER 284
Query: 113 FPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKP 172
+ I++ G+TE+ F + +T G P+ + +V+ +
Sbjct: 285 -TGLKIIDGIGATEM---LHIFISANEENAKPGAT------GKPVPGYEARIVDDQGNEV 334
Query: 173 DEGEIYAGGLCLSN----GYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARR 228
GE AG L + Y + EYV+ N TGD R+
Sbjct: 335 PRGE--AGRLAVRGPTGCRYLDDER--QQEYVRDGWNV---------------TGDIFRQ 375
Query: 229 IQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIV 288
+ G ++ R D I G +A E+E L HPDV + AV+ + I+ A IV
Sbjct: 376 DEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLTHPDVAECAVIGVPDEERGQIVCAHIV 435
Query: 289 LKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
L++ ++E+ ++ +V + + P F+D+LP T +GK+
Sbjct: 436 LRDGTKATELLAERLQDFVKAVIAPYKYPREINFVDALPKTQTGKI 481
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 9e-13
Identities = 54/203 (26%), Positives = 88/203 (43%), Gaps = 28/203 (13%)
Query: 148 LKSVPI--GLPISNCDIVLVESDTVKP----DEGEIYAGGLCLSNGYFSESTFMPSEYVK 201
L S P+ GLP+ + + + +T + EGEI L GY+
Sbjct: 382 LLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPSLLKGYW------------ 429
Query: 202 LHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLR 261
N + TGD + + G L +LGR+ +K+NG + E+E L
Sbjct: 430 --NKPEATAEALRDG--WLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLG 485
Query: 262 GHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN-RF 320
HP V+ +AVV + + VAF+ LK + +++++W + + +P R
Sbjct: 486 QHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLTA---AALQAWCRENMAVYKVPEIRI 542
Query: 321 VFMDSLPMTSSGKVDYASLSAST 343
V D+LPMT++GKV L A
Sbjct: 543 V--DALPMTATGKVRKQDLQALA 563
|
Length = 567 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 9e-13
Identities = 40/119 (33%), Positives = 57/119 (47%), Gaps = 8/119 (6%)
Query: 219 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVV--SHKH 276
+FRTGD R G L GRK I G+ ++ EIE L HP V + AVV +
Sbjct: 317 WFRTGDLGRLDADGYLRITGRKKDIIIRGGENISAREIEDLLLRHPAVAEVAVVAMPDER 376
Query: 277 QGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK-LPLAMIPNRFVFMDSLPMTSSGKV 334
GE V A +V + + L+ + ++++ L P R +D+LP T SGKV
Sbjct: 377 LGERV--CAVVVP---APGASLTLAELTEHLAAQGLAKQKWPERLEVVDALPRTPSGKV 430
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 9e-13
Identities = 76/331 (22%), Positives = 132/331 (39%), Gaps = 57/331 (17%)
Query: 35 ACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLL 94
AC +++P K + + + ++ ++++ + TVP++M ++ + V S++ +
Sbjct: 239 ACHVLLP-----KFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKI 293
Query: 95 VLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTY---FDCKRLPSILEMSTL--- 148
+ G L + KLFPN + + YG TE T+ D + T+
Sbjct: 294 LNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQT 353
Query: 149 KSVPIGLPISNC----------DIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSE 198
KS + P C I L ES V G I G + GY+ +++ S
Sbjct: 354 KSSSVHQPQGVCVGKPAPHVELKIGLDESSRV----GRILTRGPHVMLGYWGQNSETAS- 408
Query: 199 YVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEH 258
+ + TGD ++G+L +GR + IK G+ + EE+E
Sbjct: 409 --------------VLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEA 454
Query: 259 TLRGHPDVVDTAVVS--HKHQGELVILVAFIVLKEKKTSSEIFLSSIKS--WVSS----- 309
L HP V VV E+V VA + L++ S+ + K +SS
Sbjct: 455 VLSQHPGVASVVVVGVPDSRLTEMV--VACVRLRDGWIWSDNEKENAKKNLTLSSETLRH 512
Query: 310 -----KLPLAMIPNRFV-FMDSLPMTSSGKV 334
L IP FV + P+T++GK+
Sbjct: 513 HCREKNLSRFKIPKLFVQWRKPFPLTTTGKI 543
|
Length = 563 |
| >gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 1e-12
Identities = 64/293 (21%), Positives = 109/293 (37%), Gaps = 54/293 (18%)
Query: 57 LQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISK----- 111
L+ +IS + TVP+++ + N + + +K++ SG + W+ +K
Sbjct: 227 LETENISVMYTVPTMLESLYKE-----NRVIENKMKIIS-SG-----AKWEAEAKEKIKN 275
Query: 112 LFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD--T 169
+FP + YG++E+S T + E S + +G P N + +
Sbjct: 276 IFPYAKLYEFYGASELSF-VTA-------LVDEESERRPNSVGRPFHNVQVRICNEAGEE 327
Query: 170 VKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARR 228
V+ E G +Y GY + D
Sbjct: 328 VQKGEIGTVYVKSPQFFMGYIIGGVLARELNAD----------------GWMTVRDVGYE 371
Query: 229 IQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVV--SHKHQGELVILVAF 286
+ G + +GR+ I G + EEIE L HP V + V+ + GE VA
Sbjct: 372 DEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGE--KPVAI 429
Query: 287 IVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASL 339
I K T ++ KS+ +L IP + F+D +P T+SGK+
Sbjct: 430 I--KGSATKQQL-----KSFCLQRLSSFKIPKEWHFVDEIPYTNSGKIARMEA 475
|
Length = 487 |
| >gnl|CDD|234163 TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 1e-12
Identities = 71/350 (20%), Positives = 113/350 (32%), Gaps = 113/350 (32%)
Query: 573 DAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK 632
DA+ LW + L+ R+ S V AD V VG KG++ LD G W + EV
Sbjct: 81 DAETGKRLWRVDLDERL--SGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVL 138
Query: 633 CQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS 692
P+V + ++ V +
Sbjct: 139 SPPLVA--------------------------------------------NGLVVVRTND 154
Query: 693 GRLTAISVKALPFHT---LWLHELEVPAF---ASLCITSANRHVICCLVDGHVVALD-SS 745
GRLTA+ T LW + PA S A+ V+ G +VAL+ +
Sbjct: 155 GRLTALDAA-----TGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALNLQT 209
Query: 746 GSIIWRCR----------------TGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESG 789
G +W R G P+ G QV S G + + + SG
Sbjct: 210 GQPLWEQRVALPKGRTELERLVDVDGDPVVDGG--------QVYAVSYQGRVAALDLRSG 261
Query: 790 NLLW--EYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKE 847
+LW + S D + + + G + L +G E
Sbjct: 262 RVLWKRDASSYQGPAVD-----------------DNRLYVTDADGVVVALDRR---SGSE 301
Query: 848 NQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALETQHL 897
D EL+ ++P ++GG + VG + Y++ ++ E
Sbjct: 302 LWKND---------ELKYRQLTAPAVLGGYLVVGDFEGYLHWLSREDGSF 342
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ [Protein fate, Protein and peptide secretion and trafficking]. Length = 377 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 2e-12
Identities = 75/290 (25%), Positives = 126/290 (43%), Gaps = 45/290 (15%)
Query: 57 LQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNI 116
++ Y ++ P++ R ++ S++++ SSL+ +GE L +++ K I
Sbjct: 272 IEKYGVTTFCAPPTIYRFLIKEDLSKYDL---SSLRYCTTAGEPLNPEVFNTF-KEKTGI 327
Query: 117 SILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVP--IGLPISNCDIVLVESD--TVKP 172
++ +G TE T +I ++ P +G P DI +++ D + +
Sbjct: 328 KLMEGFGQTE----TTL-------TIATFPWMEPKPGSMGKPSPGYDIDIIDPDGKSCEV 376
Query: 173 -DEGEIY---AGG--LCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFA 226
+EGEI + G L L GY+ + + H+ Y+ TGD A
Sbjct: 377 GEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVW---HDG-------------YYHTGDTA 420
Query: 227 RRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSHKHQGELVILV 284
+ G L F+GR D IK +G R+ E+E L HP V++ AV V +G++V
Sbjct: 421 WMDEDGYLWFVGRADDLIKSSGYRIGPFEVESALIQHPAVLECAVTGVPDPIRGQVV--K 478
Query: 285 AFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
A IVL + SE ++ V P F+D LP T SGK+
Sbjct: 479 ATIVLTKGYEPSEELKKELQDHVKKVTAPYKYPRIIEFVDELPKTISGKI 528
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 2e-12
Identities = 66/279 (23%), Positives = 108/279 (38%), Gaps = 46/279 (16%)
Query: 65 LTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNIS--ILNLY 122
L VP + ++ N + SL+ SG + D++ I N Y
Sbjct: 288 LAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRP---DVVIAFMDQFGDVIYNNY 344
Query: 123 GSTEVSGDCTYFDCKRLPSILEMSTLKSVP--IGLPISNCDIVLVESDTVKPDEGE---I 177
+TE + + + L++ P G P +I +++ D + GE I
Sbjct: 345 NATEAG----------MIATATPADLRAAPDTAGRPAEGTEIRILDQDFREVPTGEVGTI 394
Query: 178 YAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFL 237
+ +GY S ST H+ + +GD ++G L +
Sbjct: 395 FVRNDTQFDGYTSGST------KDFHDGFMA-------------SGDVGYLDENGRLFVV 435
Query: 238 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTS 295
GR D I G+ + E+E TL HPDV + AV V + G+ L AF+VLK
Sbjct: 436 GRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQR--LAAFVVLKPG--- 490
Query: 296 SEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
+ ++K V L +P V +D LP ++GK+
Sbjct: 491 ASATPETLKQHVRDNLANYKVPRDIVVLDELPRGATGKI 529
|
Length = 537 |
| >gnl|CDD|222072 pfam13360, PQQ_2, PQQ-like domain | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 3e-12
Identities = 49/209 (23%), Positives = 82/209 (39%), Gaps = 29/209 (13%)
Query: 693 GRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWR 751
G + A+ LW +L A + + G +VALD ++G ++WR
Sbjct: 3 GVVAALDAATG--KVLWRVDLGGTALGGG-VAVDGGRLYVATGKGELVALDAATGKLLWR 59
Query: 752 CRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPI-----TASAY 806
G I P V++ + +GS+Y+ + E+G LLW Y P ++S
Sbjct: 60 KDLSGEILGAP---TVAGGVVVVVTADGSLYALDAETGKLLWSYQRSLPPLTLRGSSSPA 116
Query: 807 IDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKEN-QSKDHMVQEFAKLELQG 865
I V + SSG + L TGK ++ + +++E
Sbjct: 117 IV-------------GDTVIVGFSSGKLVALDPK---TGKVLWEAPVAAPRGGSEIERLV 160
Query: 866 DIFSSPVMIGGRVFVGCRDDYIYCIALET 894
DI +PV+ GGRV+ + + L T
Sbjct: 161 DITGTPVVDGGRVYASSYQGRLVALDLAT 189
|
This domain contains several repeats of the PQQ repeat. Length = 234 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 4e-12
Identities = 55/190 (28%), Positives = 83/190 (43%), Gaps = 20/190 (10%)
Query: 153 IGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSV 212
IG P+ CD L++ + K + GE+ G L G P+ + N + +
Sbjct: 319 IGKPVLFCDYELIDENKNKVEVGEV---GELLIRG--------PNVMKEYWNRP--DATE 365
Query: 213 SCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVV 272
+ TGD AR + G + +GRK I G+ + E+E + DV + AVV
Sbjct: 366 ETIQDGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVV 425
Query: 273 SHKHQ--GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTS 330
+H GE+ I AFIV KK+SS + + L IP VF+ LP +
Sbjct: 426 GRQHVKWGEIPI--AFIV---KKSSSVLIEKDVIEHCRLFLAKYKIPKEIVFLKELPKNA 480
Query: 331 SGKVDYASLS 340
+GK+ A L
Sbjct: 481 TGKIQKAQLV 490
|
Length = 496 |
| >gnl|CDD|222072 pfam13360, PQQ_2, PQQ-like domain | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 7e-12
Identities = 54/238 (22%), Positives = 92/238 (38%), Gaps = 38/238 (15%)
Query: 534 QELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSA 593
+ LW+V + + V L+V + + + DA +LW L G I
Sbjct: 14 KVLWRVDLGGTALGGGVAVDGG---RLYVATGKGELVALDAATGKLLWRKDLSGEI--LG 68
Query: 594 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC-----QPVVDAPRQLIWCGS 648
A VVV G +Y LD TG + W++Q P + ++ G
Sbjct: 69 APTVAGGVVVVVTADGSLYALDAETGKLLWSYQRSLPPLTLRGSSSPAIVGDTVIV--GF 126
Query: 649 HDHNLYALDFRNYRCVYKLPCGGS-----------IFGSPAIDEVHDVLYVASTSGRLTA 697
L ALD + + +++ P I G+P +D +Y +S GRL A
Sbjct: 127 SSGKLVALDPKTGKVLWEAPVAAPRGGSEIERLVDITGTPVVDG--GRVYASSYQGRLVA 184
Query: 698 ISVKALPFHT---LWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWR 751
+ + T LW E+ + + + DG +VALD ++G+++W+
Sbjct: 185 LDL-----ATGKVLW--SREISSINGPAV--DGGLLFVVDDDGELVALDRATGAVLWK 233
|
This domain contains several repeats of the PQQ repeat. Length = 234 |
| >gnl|CDD|224437 COG1520, COG1520, FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 7e-12
Identities = 63/291 (21%), Positives = 102/291 (35%), Gaps = 35/291 (12%)
Query: 545 VDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKL---EGRIECSAAVLADFSQ 601
+ A+P VL YL A+ ++LW + L G I A
Sbjct: 14 LGATP--VLAAGTDYLVAVGADLV-AVANNTSGTLLWSVSLGSGGGGIYAGPAPADGDGT 70
Query: 602 VVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK---CQPVVDAPRQLIWCGSHDHNLYALDF 658
V VG G I+ L+ TG + W++ G V + + I+ GS D LYALD
Sbjct: 71 VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK--IYVGSWDGKLYALDA 128
Query: 659 RN--YRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVP 716
+ P + + +YV + G L A++ A W +E P
Sbjct: 129 STGTLVWSRNVGGSPYYASPPVVGD--GTVYVGTDDGHLYALN--ADTGTLKWTYETPAP 184
Query: 717 AFASLC----ITSANRHVICCLVDGHVVALDS-SGSIIWRCRTGGPI--FAGPCTSFALP 769
S+ I S +V DG + AL++ G++ W + I A T
Sbjct: 185 LSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDG 244
Query: 770 SQVLIC------SRNGSIYSFEQESGNLLWEYSV-----GDPITASAYIDE 809
V + S G + + ++G L+W + G + +
Sbjct: 245 GPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAGA 295
|
Length = 370 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 8e-12
Identities = 74/315 (23%), Positives = 122/315 (38%), Gaps = 51/315 (16%)
Query: 56 FLQAYSISRLTT---VPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLS--MWDIIS 110
L ++T VP+ + V Q++ P L L VLS P S + ++
Sbjct: 257 LLDVLEAEKVTGIFLVPAQWQAVCAEQQAR-----PRDLALRVLSWGAAPASDTLLRQMA 311
Query: 111 KLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTV 170
FP IL +G TE+S + + L SV +P +V + V
Sbjct: 312 ATFPEAQILAAFGQTEMSPVTCMLLGED-----AIRKLGSVGKVIPTVAARVVDENMNDV 366
Query: 171 KPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRI 229
E GEI L +GY+ NN G +F +GD R+
Sbjct: 367 PVGEVGEIVYRAPTLMSGYW--------------NNPEATAEAFAGG--WFHSGDLVRQD 410
Query: 230 QSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVV--SHKHQGELVILVAFI 287
+ G + + RK I G+ + E+E+ L HPD+V+ AV+ + + GE+ + VA +
Sbjct: 411 EEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAV 470
Query: 288 VLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV-------DYASLS 340
+ + + L + +++ +L P +D+LP +GKV Y +
Sbjct: 471 ----RNDDAALTLEDLAEFLTDRLARYKHPKALEIVDALPRNPAGKVLKTELRERYGACV 526
Query: 341 ------ASTSFTISA 349
AS FT
Sbjct: 527 NVERRSASAGFTERR 541
|
Length = 542 |
| >gnl|CDD|222072 pfam13360, PQQ_2, PQQ-like domain | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 58/249 (23%), Positives = 99/249 (39%), Gaps = 33/249 (13%)
Query: 653 LYALDFRNYRCVYKLPCGGSIFGSP-AIDEVHDVLYVASTSGRLTAISVK--ALPFHTLW 709
+ ALD + ++++ GG+ G A+D LYVA+ G L A+ L LW
Sbjct: 5 VAALDAATGKVLWRVDLGGTALGGGVAVDG--GRLYVATGKGELVALDAATGKL----LW 58
Query: 710 LHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP--IFAGPCTSF 766
+L + T A V+ DG + ALD +G ++W + P G +
Sbjct: 59 RKDLSGEILGAP--TVAGGVVVVVTADGSLYALDAETGKLLWSYQRSLPPLTLRGSSSPA 116
Query: 767 ALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVC 826
+ V++ +G + + + ++G +LWE V P S E L + + V
Sbjct: 117 IVGDTVIVGFSSGKLVALDPKTGKVLWEAPVAAPRGGSEI--ERLVDITGTPVVDGGRVY 174
Query: 827 ICTSSGSIHILRVNLDV-TGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDD 885
+ G + V LD+ TGK S++ + P + GG +FV D
Sbjct: 175 ASSYQGRL----VALDLATGKVLWSREISS------------INGPAVDGGLLFVVDDDG 218
Query: 886 YIYCIALET 894
+ + T
Sbjct: 219 ELVALDRAT 227
|
This domain contains several repeats of the PQQ repeat. Length = 234 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-11
Identities = 72/292 (24%), Positives = 131/292 (44%), Gaps = 38/292 (13%)
Query: 57 LQAYSISRLTTVPSLMRVVL---PALQ--SQHNMHVPSSLKLLVLSGEVLPLSMWDIISK 111
++ Y ++ L T P+ +R + P + ++++ SSL+ L L+GE L + I K
Sbjct: 311 IEEYGVNALFTAPTAIRAIRKQDPDGEYIKKYDL---SSLRALFLAGERLDSPTLEWIEK 367
Query: 112 LFPNISILNLYGSTE----VSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVES 167
+ +++ + TE ++ +C + + S K VP G + ++
Sbjct: 368 TL-GVPVIDHWWQTETGWPITANCVGLELLPIKP---GSPGKPVP-GY---DVQVLDETG 419
Query: 168 DTVKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFA 226
+ + P E G I L L G + KL+ N Y+ TGD
Sbjct: 420 EELGPGELGNI-VIKLPLPPGCLLTLWGDDERFKKLYLNK---------FPGYYDTGDSG 469
Query: 227 RRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKH--QGELVILV 284
+ + G L +GR D I + G R++ E+E ++ HPDV + AVV + +G+ + +
Sbjct: 470 YKDEDGYLFVMGRTDDVINVAGHRLSTGEMEESVLKHPDVAECAVVGVRDELKGQ--VPL 527
Query: 285 AFIVLKEK-KTSSEIFLSSIKSWVSSKL-PLAMIPNRFVFMDSLPMTSSGKV 334
+VLK+ K ++ + I + V ++ P+A VF+ LP T SGK+
Sbjct: 528 GLVVLKDDCKIDADQLENEIVALVREQIGPVAA-FRNVVFVKRLPKTRSGKI 578
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-11
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 7/124 (5%)
Query: 217 QTYF-------RTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDT 269
YF R GD+ + G ++ GR D T+ G R+ EI + P+V D+
Sbjct: 463 DAYFDTFPGVWRHGDWIKITPHGGVIIYGRSDATLNPGGVRIGTAEIYRVVEKIPEVEDS 522
Query: 270 AVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMT 329
VV + + F+ L+E T + + I+S + + L +P + + +P T
Sbjct: 523 LVVGQEVDDGDERMPLFVKLREGVTLDDALVKRIRSAIRAALSPRHVPAEIIAVPDIPYT 582
Query: 330 SSGK 333
SGK
Sbjct: 583 LSGK 586
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-11
Identities = 82/297 (27%), Positives = 132/297 (44%), Gaps = 46/297 (15%)
Query: 58 QAYSISRLTTVPSLMRVVL---PALQSQHNMHVPSSLKLLVLSGEVL--PLSMWDIISKL 112
+ Y ++R+ + P+ +RV+ PAL +H++ SSL+ L L+GE L P + W I L
Sbjct: 324 EKYKVNRMFSAPTAIRVLKKQDPALLRKHDL---SSLRALFLAGEPLDEPTASW-ISEAL 379
Query: 113 FPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDT--- 169
+ +++ Y TE T + + +E + G+P+ ++ L+ T
Sbjct: 380 --GVPVIDNYWQTE-----TGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEP 432
Query: 170 VKPDEGEIYA--GGL---CLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGD 224
P+E + G L C+ + + F+ Y G Q Y T D
Sbjct: 433 CGPNEKGVLVIEGPLPPGCMQTVWGDDDRFV-KTYWS-----------LFGRQVY-STFD 479
Query: 225 FARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQ--GELVI 282
+ R G LGR D I + G R+ EIE ++ HP V + AVV K G++
Sbjct: 480 WGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVA- 538
Query: 283 LVAFIVLKEKKT--SSEIFLS---SIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
VAF+V K+ + E L+ I + V S+L P R F+ +LP T SGK+
Sbjct: 539 -VAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGKL 594
|
Length = 629 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 4e-11
Identities = 63/265 (23%), Positives = 108/265 (40%), Gaps = 48/265 (18%)
Query: 89 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLP--SILEMS 146
SSL+L+V E LP + ++ + F I IL YG+TE S P S+
Sbjct: 259 SSLRLVVAGAEKLPEATRELFEEKF-GIRILEGYGATECS-----------PVISVNTPM 306
Query: 147 TLKSVPIGLPISNCDIVLVESDTVKP----DEGEIYAGGLCLSNGYF--SESTFMPSEYV 200
K +G P+ ++ +V +T + + G + G + +GY E T SE
Sbjct: 307 GNKPGTVGRPLPGIEVRIVSPETHEELPIGEGGLLLVRGPNVMSGYLNNEEKT---SEVE 363
Query: 201 KLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRM----ALEEI 256
L + ++ TGD + + G L +GR R KI G+ M A+EE+
Sbjct: 364 VLGD-------------GWYDTGDIGKIDEDGFLTIVGRLKRFAKIGGE-MVSLTAVEEL 409
Query: 257 EHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMI 316
+ + V + +GE ++L+ + E + ++ L +
Sbjct: 410 LSEILPEDSLHAAVEVPDEKKGEKIVLLTT----TEDLDPEELNAILREAGLPNL---AV 462
Query: 317 PNRFVFMDSLPMTSSGKVDYASLSA 341
P + + +D +P+ SGK DY L
Sbjct: 463 PRKILHVDEIPLLGSGKTDYRGLKK 487
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 7e-11
Identities = 75/331 (22%), Positives = 125/331 (37%), Gaps = 70/331 (21%)
Query: 29 LSAILTACTLVVPPI-----IELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQH 83
L+ + +V+ + N I+ + Y I+ L+ VP++ LQ
Sbjct: 274 LAPLARGAHVVLATPQGYRGPGVIANFWKIV---ERYRINFLSGVPTVYAA---LLQVPV 327
Query: 84 NMHVPSSLKLLVLSGEV-LPLSMWDIISKLFPNISILNLYGSTE----VSGDCTYFDC-K 137
+ H SSL+ L G LP+ ++ + I+ YG TE S D +
Sbjct: 328 DGHDISSLRY-ALCGAAPLPVEVFRRFEAA-TGVRIVEGYGLTEATCVSS--VNPPDGER 383
Query: 138 RLPSILEMSTLKSVPIGLPISNCD--IVLVESDTVKPDE---GEIYAGGLCLSN-----G 187
R+ S+ GL + +V+++ + E+ G LC++ G
Sbjct: 384 RIGSV-----------GLRLPYQRVRVVILDDAGRYLRDCAVDEV--GVLCIAGPNVFSG 430
Query: 188 YFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR-KDRTIKI 246
Y + HN + + TGD R G GR KD I+
Sbjct: 431 YLEAA----------HNKGLW------LEDGWLNTGDLGRIDADGYFWLTGRAKDLIIR- 473
Query: 247 NGQRMALEEIEHTLRGHPDVVDTAVVSH--KHQGELVILVAFIVLKEKKTSSEIFLSSIK 304
G + IE L HP V A V H GEL VA++ LK +++E + +
Sbjct: 474 GGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELP--VAYVQLKPGASATE---AELL 528
Query: 305 SWVSSKLP-LAMIPNRFVFMDSLPMTSSGKV 334
++ + A +P +D+LP T+ GK+
Sbjct: 529 AFARDHIAERAAVPKHVRILDALPKTAVGKI 559
|
Length = 632 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 7e-11
Identities = 76/286 (26%), Positives = 115/286 (40%), Gaps = 44/286 (15%)
Query: 57 LQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNI 116
+ + + L VP ++ +L + SSLK++ +SG L + + F +
Sbjct: 291 IAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAFGPV 350
Query: 117 SILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVP--IGLPISNCDIVLVESD--TVKP 172
+ NLYGSTEV+ +I L P +G P + +++ + V
Sbjct: 351 -LYNLYGSTEVA----------FATIATPEDLAEAPGTVGRPPKGVTVKILDENGNEVPR 399
Query: 173 DE-GEIYAGGLCLSNGYFSESTFMPSE-YVKLHNNSICNCSVSCGSQTYFRTGDFARRIQ 230
G I+ G P E Y + I + +S G YF D +
Sbjct: 400 GVVGRIFVGN------------GFPFEGYTDGRDKQIIDGLLSSGDVGYF---D-----E 439
Query: 231 SGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSHKHQGELVILVAFIV 288
G L GR D I G+ + E+E L GHPDVV+ AV V + G+ L AF+V
Sbjct: 440 DGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQR--LRAFVV 497
Query: 289 LKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
E +IK +V L +P VF+D LP +GKV
Sbjct: 498 KAPGAALDE---DAIKDYVRDNLARYKVPRDVVFLDELPRNPTGKV 540
|
Length = 549 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 7e-11
Identities = 62/263 (23%), Positives = 102/263 (38%), Gaps = 50/263 (19%)
Query: 89 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 148
SSL + G + S+ + + +L PN+ + + GS+E +G
Sbjct: 296 SSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSE-TGFGG----------SGTVAK 344
Query: 149 KSVPIGLPI----SNCDIVLVESDTVKPDEGEIYAGGLCLS----NGYF-----SESTFM 195
+V G P ++ + + V+P GEI G + GY+ + TF
Sbjct: 345 GAVHTGGPRFTIGPRTVVLDEDGNPVEPGSGEI--GWIARRGHIPLGYYKDPEKTAETF- 401
Query: 196 PSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEE 255
+ Y GD AR G + LGR I G+++ EE
Sbjct: 402 -----PTIDG-----------VRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEE 445
Query: 256 IEHTLRGHPDVVDTAVVSHKHQ--GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPL 313
+E L+ HPDV D VV + G+ V VA + L+E + +++ S L
Sbjct: 446 VEEALKAHPDVADALVVGVPDERWGQEV--VAVVQLREGARPDL---AELRAHCRSSLAG 500
Query: 314 AMIPNRFVFMDSLPMTSSGKVDY 336
+P F+D + + +GK DY
Sbjct: 501 YKVPRAIWFVDEVQRSPAGKADY 523
|
Length = 533 |
| >gnl|CDD|199834 cd10276, BamB_YfgL, Beta-barrel assembly machinery (Bam) complex component B and related proteins | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 9e-11
Identities = 70/386 (18%), Positives = 133/386 (34%), Gaps = 73/386 (18%)
Query: 536 LWKVHM----ESCVDASPLVVLKDSDIY-LFVGSHSHKFICADAKRSSVLWEIKLEGRIE 590
LW + + +D +P+V +Y F +A ++WE L G+
Sbjct: 17 LWSKSVGNGGMAGIDLTPVVA--GDMVYAADANGQVSAF---NATTGKIIWETSLSGKGF 71
Query: 591 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYW-TFQTCGEVKCQPVVDAPRQLIWCGSH 649
++ VG G +Y LD G W T + ++ P + I+ G+
Sbjct: 72 LGGTPAVGNGKIFVGTESGYLYALDAKDGSELWRTEVSDSQLLSPPTYADGK--IYVGTG 129
Query: 650 DHNLYALDFRNYRCVYKLPCGGSI-----FGSPAIDEVHDVLYVASTSGRLTAISVKALP 704
D LY + + V+ +P DV++V +G + A++
Sbjct: 130 DGRLYYCNAETGKVVWNRTSTAPELSLRGGAAPVGAY--DVVFVGDGNGTVVALNTGT-- 185
Query: 705 FHTLWLHELEVPAFASLCITSANRHV---ICCLVD----------GHVVALDS-SGSIIW 750
+W + P T R + + +V G++VALD SG +W
Sbjct: 186 GVDIWEFSVSEPRGR----TELPRMIDSSVTYVVVGGYLYSTSYQGYLVALDFESGQFLW 241
Query: 751 RCRTGGPIFAGPCTSFALP--SQVLICSRNGSIYSFEQESGNLLWEYSVGDP--ITASAY 806
+ G TS + +V + GS+Y + +G+ LW +V +++ A
Sbjct: 242 SRKASGG------TSTSTDANGRVYVGDGEGSLYCLDASTGDELWSQTVLLGRVLSSPAI 295
Query: 807 IDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGD 866
+ + G ++ L+ N D + +++
Sbjct: 296 ------------YVGVYIYVTDNAEGYLYCLKDN-----------DGLTVARVEVDYSQY 332
Query: 867 IFSSPVMIGGRVFVGCRDDYIYCIAL 892
I P + G ++ G D Y+Y +
Sbjct: 333 ILQGPAVSDGWLYYGTDDGYLYALTR 358
|
BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization. Length = 358 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-10
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 219 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVS--HKH 276
+F +GD A G + R I G+ ++ E+E L HP V++ AVV+ +
Sbjct: 402 WFHSGDLAVVHPDGYIEIKDRSKDIIISGGENISSIEVEGVLYKHPAVLEAAVVARPDEK 461
Query: 277 QGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
GE AF+VLK + +E + + KL +P F++ LP T++GK+
Sbjct: 462 WGETP--CAFVVLKPGASVTE---EELIEYCREKLAHFKVPKTVEFVE-LPKTATGKI 513
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|224437 COG1520, COG1520, FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 2e-10
Identities = 63/335 (18%), Positives = 121/335 (36%), Gaps = 32/335 (9%)
Query: 577 SSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPV 636
S++ +L + + + A +V + + +G + W+
Sbjct: 2 STLSLLGRLFATLGATPVLAAGTDYLVAVGA-DLVAVANNTSGTLLWSVSLGSGGGGIYA 60
Query: 637 VDAP---RQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS--IFGSPAIDEVHDVLYVAST 691
AP ++ G+ D N++AL+ + P G+ P + +YV S
Sbjct: 61 GPAPADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGKIYVGSW 119
Query: 692 SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIW 750
G+L A+ A +W + + + + V DGH+ AL+ +G++ W
Sbjct: 120 DGKLYAL--DASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKW 177
Query: 751 RCRTGGPIFAGPCTSFALPSQVLIC---SRNGSIYSFEQESGNLLWEYSVGDPITASAYI 807
T P+ S A+ S + +G +Y+ E G L W V I +A
Sbjct: 178 TYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAIS 237
Query: 808 DEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGD- 866
+ + S +L ++ D TG+ S A +QG
Sbjct: 238 TTP----AVDGGPVYVDGGVYAGSYGGKLLCLDAD-TGELIWSFP------AGGSVQGSG 286
Query: 867 IFSSPVMIG-GRVFVGCRDDY------IYCIALET 894
++++PV G+V++G D+ +Y +A
Sbjct: 287 LYTTPVAGADGKVYIGFTDNDGRGSGSLYALADVP 321
|
Length = 370 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 2e-10
Identities = 82/333 (24%), Positives = 128/333 (38%), Gaps = 68/333 (20%)
Query: 25 LQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLT--------TVPSLMRVVL 76
L F A+L T V+ P +S S TV L+ ++
Sbjct: 236 LNAFFQALLAGATYVLEP----------------RFSASGFWPAVRRHGATVTYLLGAMV 279
Query: 77 PALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDC 136
L SQ + ++ V G +P ++ + F + +L+ YGSTE T F
Sbjct: 280 SILLSQPARESDRAHRVRVALGPGVPAALHAAFRERF-GVDLLDGYGSTE-----TNFVI 333
Query: 137 KRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCL--------SNGY 188
++ + G D E D PD GE G L L + GY
Sbjct: 334 AVTHGSQRPGSMGRLAPGFEARVVD----EHDQELPD-GE--PGELLLRADEPFAFATGY 386
Query: 189 FSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKING 248
F MP + V+ N +F TGD R G F+ R I+ G
Sbjct: 387 FG----MPEKTVEAWRN------------LWFHTGDRVVRDADGWFRFVDRIKDAIRRRG 430
Query: 249 QRMALEEIEHTLRGHPDVVDTAVVSHKHQ-GELVILVAFIVLKEKKTSSEIFLSSIKSWV 307
+ ++ E+E L HP V AV + GE ++ A +VL++ T+ E ++ ++
Sbjct: 431 ENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAA-VVLRD-GTALE-PVALVR-HC 486
Query: 308 SSKLPLAMIPNRFV-FMDSLPMTSSGKVDYASL 339
+L +P R+V F+ +LP T +GKV L
Sbjct: 487 EPRLAYFAVP-RYVEFVAALPKTENGKVQKFVL 518
|
Length = 542 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 2e-10
Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 38/199 (19%)
Query: 154 GLPISNCDIVLVESDT---VKPDE-GEIYAGGLCLSNGYF-----SESTFMPSEYVKLHN 204
G P+ ++ +V+ +T + E GEI+ G ++ GY+ + TF
Sbjct: 358 GRPLPGHEVRIVDPETRRPLPDGEVGEIWVRGPSVAAGYWNRPEATAETF---------- 407
Query: 205 NSICNCSVSCGSQTYFRTGD--FARRIQSGDLVFLGR-KDRTIKINGQRMALEEIEHTLR 261
++ + RTGD F + G+L GR KD I I G+ ++IE T+
Sbjct: 408 ----GARLATDEGGWLRTGDLGF---LHDGELYVTGRLKDL-IIIRGRNHYPQDIEATVE 459
Query: 262 GHPDVVDT---AVVSHKHQG-ELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP 317
+ A S G E +++VA + + +I++ V+ + +A P
Sbjct: 460 RAHPALRPGAAAAFSVDGDGEERLVVVAEVRRRGLPADLAALAEAIRAAVAREHGVA--P 517
Query: 318 NRFVF--MDSLPMTSSGKV 334
V +LP TSSGK+
Sbjct: 518 ADVVLVRPGTLPKTSSGKI 536
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 4e-10
Identities = 78/321 (24%), Positives = 131/321 (40%), Gaps = 65/321 (20%)
Query: 25 LQEFLSAILT---ACTLVVPPII-ELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQ 80
L+ FL+A++T + +VPPII L KN I ++ + +S+L + ++M P
Sbjct: 264 LRTFLNALITQEVSFAPIVPPIILNLVKNPI-----VEEFDLSKLK-LQAIMTAAAP--- 314
Query: 81 SQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDC---TYFDCK 137
L+ E+L FP + + YG TE S C T+ D +
Sbjct: 315 ---------------LAPELL-----TAFEAKFPGVQVQEAYGLTEHS--CITLTHGDPE 352
Query: 138 RLPSILEMSTLKSVPIGLPISNCDIVLVESDT----VKPDEGEIYAGGLCLSNGYFSEST 193
+ I + ++ +G + N ++ ++ DT K GE+ C+ GY+
Sbjct: 353 KGHGIAKKNS-----VGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYY---- 403
Query: 194 FMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMAL 253
N+ + + TGD GD+ + R IK G ++A
Sbjct: 404 -----------NNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAP 452
Query: 254 EEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPL 313
E+E L HP V D AVV + I A +V+ K SE I ++V++ +
Sbjct: 453 AELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAKESE---EDILNFVAANVAH 509
Query: 314 AMIPNRFVFMDSLPMTSSGKV 334
F+DS+P + SGK+
Sbjct: 510 YKKVRVVQFVDSIPKSLSGKI 530
|
Length = 546 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 4e-10
Identities = 62/251 (24%), Positives = 109/251 (43%), Gaps = 34/251 (13%)
Query: 89 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILE---M 145
SL+ + +G +P ++ + +++ P +N+YG+TE + + Y R + +
Sbjct: 269 DSLEHVTFAGATMPDAVLERVNQHLP-GEKVNIYGTTE-AMNSLYMRDPRTGTEMRPGFF 326
Query: 146 STLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNN 205
S ++ V IG + D L + EGE+ +++TF + Y L+
Sbjct: 327 SEVRIVRIG---GSPDEALPNGE-----EGELVVAA--------ADATF--TGY--LNQP 366
Query: 206 SICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPD 265
+ G ++RT D A SG + LGR D I G+ + E+E L P
Sbjct: 367 QATAEKLQDG---WYRTSDVAVVDPSGTVRILGRVDDMIISGGENIHPSEVERVLGRAPG 423
Query: 266 VVDTAVVSHKHQ--GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFM 323
V + V+ + G+ V A +V +E +T S L + +S+L P R+ F+
Sbjct: 424 VTEVVVIGLPDERWGQSV--TACVVPREGETLSADALDTF--CRASELADFKRPRRYFFL 479
Query: 324 DSLPMTSSGKV 334
D LP + KV
Sbjct: 480 DELPKNAMNKV 490
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 4e-10
Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 37/195 (18%)
Query: 154 GLPISNCDIVLVESDTVKP----DEGEIYAGGLCLSNGYF-----SESTFMPSEYVKLHN 204
G+P D +++ +T++ + GEI G + GY+ + F+ +
Sbjct: 360 GIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEID------ 413
Query: 205 NSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHP 264
+ +FRTGD R + G R R I +G ++ E+E+ L HP
Sbjct: 414 -----------GKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHP 462
Query: 265 DVVDTAVVSHK--HQGELVILVAFIVLKEK---KTSSEIFLSSIKSWVSSKLPLAMIPNR 319
+ + V++ +GE V A +VL+ + KT+ E I +W + P
Sbjct: 463 AIQEACVIATPDPRRGETV--KAVVVLRPEARGKTTEE----EIIAWAREHMAAYKYPRI 516
Query: 320 FVFMDSLPMTSSGKV 334
F+DSLP + SGK+
Sbjct: 517 VEFVDSLPKSGSGKI 531
|
Length = 546 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 5e-10
Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 26/180 (14%)
Query: 161 DIVLVESD--TVKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQ 217
I +V SD + GE++ G + GY + T + + +
Sbjct: 364 QIRIVGSDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANF----------------TD 407
Query: 218 TYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSHK 275
+ RTGD +GDL GR I G++++ E +E L HP+V++ AV V +
Sbjct: 408 GWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQ 467
Query: 276 HQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVD 335
GE V A IV +E S+ + + +L IP F LP T+ G +D
Sbjct: 468 LYGEAV--AAVIVPRE---SAPPTAEELVQFCRERLAAFEIPASFQEASGLPHTAKGSLD 522
|
Length = 534 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 6e-10
Identities = 66/262 (25%), Positives = 100/262 (38%), Gaps = 53/262 (20%)
Query: 89 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTY--FDCKRLPSILEMS 146
SSL+L V +P+++ + +L YG +E SG T+ D R
Sbjct: 281 SSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDR-------- 332
Query: 147 TLKSVP--IGLPISNCD--IVLVESDTVKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVK 201
K+V IG I+ + IV + V E GE+ G + GY+ P
Sbjct: 333 --KTVAGTIGTAIAGVENKIVNELGEEVPVGEVGELLVRGPNVMKGYYD----DPEATAA 386
Query: 202 -------LHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALE 254
LH TGD R + G L + RK + G +
Sbjct: 387 AIDADGWLH------------------TGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPA 428
Query: 255 EIEHTLRGHPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLP 312
E+E L HP V + AV V + GE+ A++VLK +E + ++ L
Sbjct: 429 EVEEVLYEHPAVAEAAVIGVPDERLGEVGK--AYVVLKPGAELTE---EELIAYCREHLA 483
Query: 313 LAMIPNRFVFMDSLPMTSSGKV 334
+P F+D LP ++GKV
Sbjct: 484 KYKVPRSIEFLDELPKNATGKV 505
|
Length = 513 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 6e-10
Identities = 40/123 (32%), Positives = 56/123 (45%), Gaps = 9/123 (7%)
Query: 219 YFR-----TGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVS 273
YF +GD A + G F GR D IK +G+R+ E+E L HP V + V+
Sbjct: 428 YFAGDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIG 487
Query: 274 HKH--QGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSS 331
+GE++ AF+ L+ SE I+ +V L P F D LP T S
Sbjct: 488 KPDPVRGEII--KAFVALRPGYEPSEELKEEIRGFVKKGLGAHAAPREIEFKDKLPKTRS 545
Query: 332 GKV 334
GK+
Sbjct: 546 GKI 548
|
Length = 570 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 8e-10
Identities = 65/236 (27%), Positives = 92/236 (38%), Gaps = 49/236 (20%)
Query: 121 LYGSTEVSGDCTYF--------DCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD--TV 170
YG TE TY D KRL S G P + L++ D V
Sbjct: 312 YYGQTEAPMVITYLRKRDHDPDDPKRLTSC-----------GRPTPGLRVALLDEDGREV 360
Query: 171 KPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRI 229
E GEI G + +GY++ P E + + + TGD AR
Sbjct: 361 AQGEVGEICVRGPLVMDGYWN----RPEETAEAFRDG------------WLHTGDVARED 404
Query: 230 QSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSHKHQGELVILVAFI 287
+ G + RK I G + E+E L HP V AV V + GE V A +
Sbjct: 405 EDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAV--TAVV 462
Query: 288 VLK--EKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSA 341
VL+ ++E+ + +K S P + F+DSLP+T+ GK D +L A
Sbjct: 463 VLRPGAAVDAAEL-QAHVKERKGS----VHAPKQVDFVDSLPLTALGKPDKKALRA 513
|
Length = 524 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 8e-10
Identities = 77/302 (25%), Positives = 120/302 (39%), Gaps = 47/302 (15%)
Query: 52 SIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVL-P--LSMWDI 108
I+ L Y I+ + P++ R+++ Q + SL+ V GE L P L W
Sbjct: 257 VILQTLSKYPITTFCSAPTVYRMLV---QQDLTSYKFKSLRHCVTGGEPLNPEVLEQW-- 311
Query: 109 ISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV-ES 167
K + + YG TE C F ++ K +G D+ ++ ++
Sbjct: 312 --KAQTGLDLYEGYGQTETGLICANFKGMKI---------KPGSMGKASPPYDVQIIDDN 360
Query: 168 DTVKP--DEGEIYAGGLCLSN----GYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFR 221
V P EG+I G+ + FS P + + G ++
Sbjct: 361 GNVLPPGTEGDI---GIRVKPTRPFCLFSCYVDNPEK----------TAATIRGD--FYI 405
Query: 222 TGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQ--GE 279
TGD + G F+GR D I +G R+ E+E L HP VV++AVVS GE
Sbjct: 406 TGDRGIMDEDGYFWFVGRADDVINSSGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGE 465
Query: 280 LVILVAFIVLKEKKTSS--EIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYA 337
+V AF+VL + S E ++ V S P + F+ LP T +GK+
Sbjct: 466 VV--KAFVVLAPQFLSHDPEQLTKELQEHVKSVTAPYKYPRKVEFVQELPKTITGKIKRN 523
Query: 338 SL 339
L
Sbjct: 524 EL 525
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|222072 pfam13360, PQQ_2, PQQ-like domain | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 9e-10
Identities = 48/248 (19%), Positives = 89/248 (35%), Gaps = 40/248 (16%)
Query: 608 KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKL 667
G + LD TG + W G V ++ + L ALD + +++
Sbjct: 2 DGVVAALDAATGKVLWRVDLGGTALGGGVA-VDGGRLYVATGKGELVALDAATGKLLWRK 60
Query: 668 PCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAF----ASLCI 723
G I G+P + V+ V + G L A+ + LW ++ +P +S
Sbjct: 61 DLSGEILGAPTVAG--GVVVVVTADGSLYALDAETG--KLLWSYQRSLPPLTLRGSSSPA 116
Query: 724 TSANRHVICCLVDGHVVALD-SSGSIIWRCR----------------TGGPIFAGPCTSF 766
+ ++ G +VALD +G ++W TG P+ G
Sbjct: 117 IVGDTVIVGFS-SGKLVALDPKTGKVLWEAPVAAPRGGSEIERLVDITGTPVVDG----- 170
Query: 767 ALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVC 826
+V S G + + + +G +LW + I A L + + LV
Sbjct: 171 ---GRVYASSYQGRLVALDLATGKVLWSREIS-SINGPAVDGGLLFVVDDD----GELVA 222
Query: 827 ICTSSGSI 834
+ ++G++
Sbjct: 223 LDRATGAV 230
|
This domain contains several repeats of the PQQ repeat. Length = 234 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 1e-09
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 26/131 (19%)
Query: 216 SQTYFRTGDFARRIQSGDLVFLGR-KDRTIKIN--GQRMALEEIEHTLRGHPDVVDTAVV 272
+ ++ +GD G + +GR KD +IN G+++A EEIE+ L HP V+ A+V
Sbjct: 407 ANGFYCSGDLVSIDPDGYITVVGREKD---QINRGGEKIAAEEIENLLLRHPAVIHAALV 463
Query: 273 S--HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAM------IPNRFVFMD 324
S + GE AF+V+KE +K+ + +P+R +D
Sbjct: 464 SMEDELMGEKS--CAFLVVKE----------PLKAVQLRRFLREQGIAEFKLPDRVECVD 511
Query: 325 SLPMTSSGKVD 335
SLP+T+ GKVD
Sbjct: 512 SLPLTAVGKVD 522
|
Length = 536 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 1e-09
Identities = 71/293 (24%), Positives = 113/293 (38%), Gaps = 47/293 (16%)
Query: 58 QAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLL--VLSGEVLPLSMWDIISKLFPN 115
A I+ VP + + A ++Q ++L+ L + +G P + DI+ L
Sbjct: 223 PALGITHYFCVPQMAQ----AFRAQPGFD-AAALRHLTALFTGGA-PHAAEDILGWLDDG 276
Query: 116 ISILNLYGSTE------VSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDT 169
I +++ +G +E +S DC K + I P +V + +
Sbjct: 277 IPMVDGFGMSEAGTVFGMSVDCDVIRAK----------AGAAGIPTPTVQTRVVDDQGND 326
Query: 170 VKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARR 228
GE+ G LS GY+ P + +FRTGD ARR
Sbjct: 327 CPAGVPGELLLRGPNLSPGYWRR----PQATARAFT-----------GDGWFRTGDIARR 371
Query: 229 IQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQ--GELVILVAF 286
G + RK G+ + EIE L HP + + AVV GE +
Sbjct: 372 DADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGE--VGYLA 429
Query: 287 IVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASL 339
IV + L I+S +S++L +P +D+LP T+SGK+ A L
Sbjct: 430 IVPADGAPLD---LERIRSHLSTRLAKYKVPKHLRLVDALPRTASGKLQKARL 479
|
Length = 488 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-09
Identities = 50/189 (26%), Positives = 78/189 (41%), Gaps = 28/189 (14%)
Query: 153 IGLPISNCDIVLVESDTV---KPD--EGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSI 207
+G+P + ++ +V+ + PD EGE+ G + GY++ P E K +
Sbjct: 391 VGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWN----RPEETAKSFLDG- 445
Query: 208 CNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVV 267
+FRTGD + G + + R I G + E+E LR HP V
Sbjct: 446 -----------WFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVE 494
Query: 268 DTAVVS--HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDS 325
D AVV + E V VA +VL+ ++++ L +P RF +D
Sbjct: 495 DAAVVGLPREDGSEEV--VAAVVLEPGAALDP---EGLRAYCREHLTRYKVPRRFYHVDE 549
Query: 326 LPMTSSGKV 334
LP GKV
Sbjct: 550 LPRDQLGKV 558
|
Length = 573 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-09
Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 10/120 (8%)
Query: 219 YFRTGDFARRIQSGDLVFLGR-KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQ 277
+F TGD AR G + GR KD I+ G+ + + EIE L HP + A+V++ +
Sbjct: 420 WFDTGDLARIDADGYIRISGRSKDVIIR-GGENIPVVEIEALLYRHPAIAQVAIVAYPDE 478
Query: 278 --GELVILVAFIVLKEKKTSSEIFLSSIKSWV-SSKLPLAMIPNRFVFMDSLPMTSSGKV 334
GE AF+V + + + ++ + K+ IP R V D+LP T SGK+
Sbjct: 479 RLGERA--CAFVVP---RPGQSLDFEEMVEFLKAQKVAKQYIPERLVVRDALPRTPSGKI 533
|
Length = 547 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 2e-09
Identities = 65/259 (25%), Positives = 108/259 (41%), Gaps = 47/259 (18%)
Query: 89 SSLKLLVLSGEVLPLS-MWDIISKL-FPNISILNLYGSTEVSGDCTYFDCKRLPSILEMS 146
SSL+ +++G P+ M ++ ++ + I YG TE S P L+ +
Sbjct: 317 SSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIA--YGMTETS-----------PVSLQTT 363
Query: 147 T-------LKSVPIGLPISNCDIVLVESDTVKPDE-GEIYAGGLCLSNGYFSESTFMPSE 198
+++V P +V + TV E GE+ G + GY++ P
Sbjct: 364 AADDLERRVETVGRTQPHLEVKVVDPDGATVPRGEIGELCTRGYSVMKGYWN----NPEA 419
Query: 199 YVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR-KDRTIKINGQRMALEEIE 257
+ S + TGD A + G + +GR KD I+ G+ + EIE
Sbjct: 420 TAE-----------SIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIR-GGENIYPREIE 467
Query: 258 HTLRGHPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAM 315
L HP V D V V + GE + VA++ L +SE ++ + +++
Sbjct: 468 EFLFTHPAVADVQVFGVPDEKYGEEI--VAWVRLHPGHAASE---EELREFCKARIAHFK 522
Query: 316 IPNRFVFMDSLPMTSSGKV 334
+P F F+D PMT +GKV
Sbjct: 523 VPRYFRFVDEFPMTVTGKV 541
|
Length = 558 |
| >gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 2e-09
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 9/116 (7%)
Query: 221 RTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKH--QG 278
T D + + G L F+GR D I ++G + E+E + P V + V K G
Sbjct: 294 FTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAG 353
Query: 279 ELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
E V I + EI ++ W L +P+ + +P ++GKV
Sbjct: 354 ERVKA-KVI------SHEEIDPVQLREWCIQHLAPYQVPHEIESVTEIPKNANGKV 402
|
Length = 414 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 2e-09
Identities = 73/287 (25%), Positives = 120/287 (41%), Gaps = 41/287 (14%)
Query: 53 IIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKL 112
I LQ ++ ++ V ++++ +L L PSS + ++L G P + + K
Sbjct: 221 INKLLQTGGVTIISVVSTMLQRLLERL---GEGTYPSSFRCMLLGGGPAPKPLLEQ-CKE 276
Query: 113 FPNISILNLYGSTEVSGD-CTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVK 171
I + YG TE + T L ++ L S G P+ C++ + + V
Sbjct: 277 -KGIPVYQSYGMTETASQIVT------LSPEDALTKLGSA--GKPLFPCELKIEKDGVVV 327
Query: 172 P--DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRI 229
P +EGEI G ++ GY L+ + G +F+TGD
Sbjct: 328 PPFEEGEIVVKGPNVTKGY-------------LNREDATRETFQDG---WFKTGDIGYLD 371
Query: 230 QSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVV--SHKHQGELVILVAFI 287
+ G L L R+ I G+ + EIE L HP V + VV G+ + VAF+
Sbjct: 372 EEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQ--VPVAFV 429
Query: 288 VLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
V + T E+ + + KL +P RF F++ LP +SGK+
Sbjct: 430 VKSGEVTEEEL-----RHFCEEKLAKYKVPKRFYFVEELPRNASGKL 471
|
Length = 483 |
| >gnl|CDD|234163 TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 4e-09
Identities = 56/235 (23%), Positives = 93/235 (39%), Gaps = 33/235 (14%)
Query: 534 QELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSA 593
+ LW+V ++ + +FVG+ + I DA+ LW KL E +
Sbjct: 86 KRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS--EVLS 139
Query: 594 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV-----KCQPVVDAPRQLIWCGS 648
L VVV G++ LD TG+ WT+ PV+ A ++ G
Sbjct: 140 PPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-ADGGVLV-GF 197
Query: 649 HDHNLYALDFRNYRCVYK----LPCGGS-------IFGSPAIDEVHDVLYVASTSGRLTA 697
L AL+ + + +++ LP G + + G P +D +Y S GR+ A
Sbjct: 198 AGGKLVALNLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDG--GQVYAVSYQGRVAA 255
Query: 698 ISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWR 751
+ +++ LW + + + DG VVALD SGS +W+
Sbjct: 256 LDLRSGRV--LWKRDASSYQ----GPAVDDNRLYVTDADGVVVALDRRSGSELWK 304
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ [Protein fate, Protein and peptide secretion and trafficking]. Length = 377 |
| >gnl|CDD|224437 COG1520, COG1520, FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 6e-09
Identities = 56/295 (18%), Positives = 91/295 (30%), Gaps = 60/295 (20%)
Query: 534 QELWKVHMESCVDA-SPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECS 592
W + V S ++ D IY VGS K DA +++W + G +
Sbjct: 89 LVKWSYPLLGAVAQLSGPILGSDGKIY--VGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146
Query: 593 AAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT---CGEVKCQPVVDAPRQLIW-CGS 648
+ + V VG G +Y L+ TG + WT++T A +
Sbjct: 147 SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDG 206
Query: 649 HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDV----LYVASTSGRLTAISVKALP 704
+D LYAL+ + + +I G AI V +YV
Sbjct: 207 YDGILYALNAEDGTLKWSQKVSQTI-GRTAISTTPAVDGGPVYVDGG------------- 252
Query: 705 FHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCT 764
+ S ++C +G +IW GG +
Sbjct: 253 ----------------VYAGSYGGKLLC--------LDADTGELIWSFPAGGSVQGSGLY 288
Query: 765 SFAL----PSQVLICSRN-----GSIYSFEQESGN--LLWEYSVGDPITASAYID 808
+ + + + N GS+Y+ G L W Y VG + S
Sbjct: 289 TTPVAGADGKVYIGFTDNDGRGSGSLYALADVPGGTLLKWSYPVGGGYSLSTVAG 343
|
Length = 370 |
| >gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 6e-09
Identities = 35/116 (30%), Positives = 56/116 (48%)
Query: 219 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQG 278
Y+ +GD R + G GR D I ++G R+ E+E L HP + AVV +H+
Sbjct: 514 YYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEV 573
Query: 279 ELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
+ + AF+ L E SE S+ V +++ P++ + LP T SGK+
Sbjct: 574 KGQGIYAFVTLVEGVPYSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKI 629
|
Length = 666 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 7e-09
Identities = 69/282 (24%), Positives = 121/282 (42%), Gaps = 36/282 (12%)
Query: 60 YSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDI--ISKLFPNIS 117
+ ++ VP ++ + + V SLK V G PLS I + P++
Sbjct: 291 FKVTHFPVVPPILMALTKKAKGVCGE-VLKSLKQ-VSCGAA-PLSGKFIQDFVQTLPHVD 347
Query: 118 ILNLYGSTEVSGDCTY-FDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKP--DE 174
+ YG TE + T F+ ++L S SV + P +V + + P +
Sbjct: 348 FIQGYGMTESTAVGTRGFNTEKL------SKYSSVGLLAPNMQAKVVDWSTGCLLPPGNC 401
Query: 175 GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDL 234
GE++ G + GY + S K + RTGD A + G L
Sbjct: 402 GELWIQGPGVMKGYLNNPKATQSTIDK---------------DGWLRTGDIAYFDEDGYL 446
Query: 235 VFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVS--HKHQGELVILVAFIVLKEK 292
+ R IK G ++A ++E L HP+++D AV + K GE I VAF+V ++
Sbjct: 447 YIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGE--IPVAFVVRRQG 504
Query: 293 KTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
T S+ ++ ++V+ ++ + VF+ S+P + +GK+
Sbjct: 505 STLSQ---EAVINYVAKQVAPYKKVRKVVFVQSIPKSPAGKI 543
|
Length = 560 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 7e-09
Identities = 39/119 (32%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 219 YFRTGDFARRIQSGDLVFLGRK-DRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSHK 275
+FRTGD G L GR D I G + EIE L HP V + AV V
Sbjct: 395 WFRTGDLGHLDARGFLYITGRASDMYIS-GGSNVYPREIEEKLLTHPAVSEVAVLGVPDP 453
Query: 276 HQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
GE + VA V ++ E + + +W+ K+ +P RF F D+LP + GK+
Sbjct: 454 VWGE--VGVAVCVARDGAPVDE---AELLAWLDGKVARYKLPKRFFFWDALPKSGYGKI 507
|
Length = 528 |
| >gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 1e-08
Identities = 57/236 (24%), Positives = 83/236 (35%), Gaps = 68/236 (28%)
Query: 116 ISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEG 175
I+++ YG +E SG C Y D V ++ V+ ++G
Sbjct: 176 INVVRTYGMSETSGGCVY---------------------------DGVPLDGVRVRVEDG 208
Query: 176 EIYAGGLCLSNGY--------FSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFAR 227
I GG L+ GY F+E +FRT D
Sbjct: 209 RIALGGPTLAKGYRNPVDPDPFAEPG-------------------------WFRTDDLGA 243
Query: 228 RIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQ--GELVILVA 285
+ G L LGR D I G + + +E L HP V D AV G+ V VA
Sbjct: 244 -LDDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRV--VA 300
Query: 286 FIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSA 341
+V + L ++++ V+ L P +D LP GKVD +L
Sbjct: 301 AVVGDGGPAPT---LEALRAHVARTLDRTAAPRELHVVDELPRRGIGKVDRRALVR 353
|
Length = 358 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 1e-08
Identities = 60/236 (25%), Positives = 92/236 (38%), Gaps = 51/236 (21%)
Query: 113 FPNISILNLYGSTEVSGDCTYFDCKRLPSIL----EMSTLKSVPIGLPISNCDIVLVESD 168
P + N YG TE++ L ++L + S G P+ N + +V+ D
Sbjct: 310 LPGLRFYNCYGQTEIAP---------LATVLGPEEHLRRPGSA--GRPVLNVETRVVDDD 358
Query: 169 --TVKPDE-GEIYAGGLCLSNGYF-----SESTFMPSEYVKLHNNSICNCSVSCGSQTYF 220
V P E GEI L GY+ + F G +F
Sbjct: 359 GNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAF------------------RGG---WF 397
Query: 221 RTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSHKHQG 278
+GD + G + + RK IK G+ +A E+E L HP V + AV +
Sbjct: 398 HSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWI 457
Query: 279 ELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
E V A +V K T +E + + ++L +P R +F+D LP SGK+
Sbjct: 458 EAV--TAVVVPKAGATVTE---DELIAHCRARLAGFKVPKRVIFVDELPRNPSGKI 508
|
Length = 523 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 1e-08
Identities = 66/273 (24%), Positives = 109/273 (39%), Gaps = 50/273 (18%)
Query: 75 VLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVS------ 128
+L L+ Q + + L+ + G +P + I +L++YGSTE S
Sbjct: 290 LLNLLEKQP-ADLSA-LRFFLCGGTTIPKKV--ARECQQRGIKLLSVYGSTESSPHAVVN 345
Query: 129 -GDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD--TVKP-DEGEIYAGGLCL 184
D M T G + +I +V+ T+ P EGE + G +
Sbjct: 346 LDDPLS---------RFMHT-----DGYAAAGVEIKVVDEARKTLPPGCEGEEASRGPNV 391
Query: 185 SNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTI 244
GY E P + + + ++ +GD R ++G + GRK I
Sbjct: 392 FMGYLDE----PELTARALDE-----------EGWYYSGDLCRMDEAGYIKITGRKKDII 436
Query: 245 KINGQRMALEEIEHTLRGHPDVVDTAVVS--HKHQGELVILVAFIVLKEKKTSSEIFLSS 302
G+ ++ E+E L HP + D VV+ + GE A++VLK S L
Sbjct: 437 VRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERS--CAYVVLKAPHHSLT--LEE 492
Query: 303 IKSWVSSK-LPLAMIPNRFVFMDSLPMTSSGKV 334
+ ++ S K + P V +D LP T+SGK+
Sbjct: 493 VVAFFSRKRVAKYKYPEHIVVIDKLPRTASGKI 525
|
Length = 547 |
| >gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 1e-08
Identities = 60/278 (21%), Positives = 117/278 (42%), Gaps = 44/278 (15%)
Query: 65 LTTVPSLMRVVL---PALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNL 121
T VP ++ +L P +++++ + L++++ SG+ L ++ + +I + N
Sbjct: 268 FTAVPVVLARILELPPRVRARNPL---PQLRVVMSSGDRLDPTLGQRFMDTYGDI-LYNG 323
Query: 122 YGSTEVSGDCTYFDCKRLPSILEMSTLKSVP--IGLPISNCDIVLVESDT--VKPD-EGE 176
YGSTEV + ++ + L+ P +G P++ C + +++ + V P G
Sbjct: 324 YGSTEVG----------IGALATPADLRDAPETVGKPVAGCPVRILDRNNRPVGPRVTGR 373
Query: 177 IYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVF 236
I+ GG Y ++ + S TGD +G L
Sbjct: 374 IFVGGELAGTRYTDGG-----------GKAVVDGMTS--------TGDMGYLDNAGRLFI 414
Query: 237 LGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSS 296
+GR+D I G+ + +E+ L HP V D AV+ + L AF+VL S
Sbjct: 415 VGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVL---HPGS 471
Query: 297 EIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
+ + ++ ++ ++ P + S+P +GKV
Sbjct: 472 GVDAAQLRDYLKDRVSRFEQPRDINIVSSIPRNPTGKV 509
|
Length = 516 |
| >gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 2e-08
Identities = 59/266 (22%), Positives = 123/266 (46%), Gaps = 36/266 (13%)
Query: 79 LQSQHNMHVPSSLKLLVLSGEVLPLSMWDII-SKLFPNISILNLYGSTEVSGDCTYFDCK 137
++S++++ S+LK + GEV+ S+ + I +KL I YG TE+ TY C
Sbjct: 373 IRSKYDL---SNLKEIWCGGEVIEESIPEYIENKL--KIKSSRGYGQTEIG--ITYLYCY 425
Query: 138 RLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEGEI--YAGGLCLSNGYFSESTFM 195
+I + G+P ++ D + + EI A L + + +TF
Sbjct: 426 GHINI-PYNAT-----GVPSIFIKPSILSEDGKELNVNEIGEVAFKLPMPPSF--ATTFY 477
Query: 196 PSE--YVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMAL 253
++ + +L + Y+ +GD + ++G + R D IKI+G ++ L
Sbjct: 478 KNDEKFKQLFSKF----------PGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQL 527
Query: 254 EEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKL-- 311
IE ++ HP V++ + + + +VLK+ +++ I L+ +K+ +++ +
Sbjct: 528 NTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQ 587
Query: 312 ---PLAMIPNRFVFMDSLPMTSSGKV 334
LA++ + + ++ LP T +GK+
Sbjct: 588 DIESLAVL-RKIIIVNQLPKTKTGKI 612
|
Length = 647 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 2e-08
Identities = 67/277 (24%), Positives = 104/277 (37%), Gaps = 43/277 (15%)
Query: 62 ISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNL 121
+SR+ TVP R L SL + GE P S +++F ++
Sbjct: 249 LSRVLTVPDRDRFDL------------DSLAWCIGGGEKTPESRIRDFTRVFTRARYIDA 296
Query: 122 YGSTE-VSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPD-EGEIYA 179
YG TE SGD T + R E+ + S L I + P+ +GEI
Sbjct: 297 YGLTETCSGD-TLMEAGR-----EIEKIGSTGRALAHVEIRIADGAGRWLPPNMKGEICM 350
Query: 180 GGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 239
G ++ GY+ + + +FR+GD + G L R
Sbjct: 351 RGPKVTKGYWKDPEKTAEAFY----------------GDWFRSGDVGYLDEEGFLYLTDR 394
Query: 240 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQ--GELVILVAFIVLKEKKTSSE 297
K I G+ +A E+E + P+V + AV+ GE + A +VL T
Sbjct: 395 KKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERI--TAVVVLNPGAT--- 449
Query: 298 IFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
+ L ++ +L +P + D LP SGKV
Sbjct: 450 LTLEALDRHCRQRLASFKVPRQLKVRDELPRNPSGKV 486
|
Length = 497 |
| >gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 3e-08
Identities = 34/126 (26%), Positives = 51/126 (40%), Gaps = 8/126 (6%)
Query: 216 SQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VS 273
SQ F T D G L LGR + I G+ + E+E + V D V +
Sbjct: 322 SQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLP 381
Query: 274 HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGK 333
H GE+V A V K+ I L +K+ + +L P ++ + LP GK
Sbjct: 382 DPHWGEVV--TAIYVPKD----PSISLEELKTAIKDQLSPFKQPKHWIPVPQLPRNPQGK 435
Query: 334 VDYASL 339
++ L
Sbjct: 436 INRQQL 441
|
Length = 452 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 3e-08
Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 12/120 (10%)
Query: 219 YFRTGDFARRIQSGDLVFLGRK--DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKH 276
+FRTGD A G +GR+ D IK G R+ EIE L GHP V + AVV
Sbjct: 351 WFRTGDVAVVDPDGMHRIVGRESTD-LIKSGGYRIGAGEIETALLGHPGVREAAVVGVPD 409
Query: 277 Q--GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
G+ + VA++V + + E+ +V+ +L + P F+D+LP + GKV
Sbjct: 410 DDLGQRI--VAYVVGADDVAADELI-----DFVAQQLSVHKRPREVRFVDALPRNAMGKV 462
|
Length = 471 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 3e-08
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 255 EIEHTLRGHPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLP 312
EIE L HP + D V V + GE + A+I+L+ T +E ++ + K+
Sbjct: 464 EIEEFLYTHPKIQDVQVVGVPDEKYGE--EVCAWIILRPGATLTE---EDVRDFCRGKIA 518
Query: 313 LAMIPNRFVFMDSLPMTSSGKV 334
IP F+D PMT +GK+
Sbjct: 519 HYKIPRYIRFVDEFPMTVTGKI 540
|
Length = 559 |
| >gnl|CDD|234163 TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 4e-08
Identities = 37/160 (23%), Positives = 62/160 (38%), Gaps = 25/160 (15%)
Query: 736 DGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWE 794
DG VVALD +G +WR + G L V + + G + + + E G LW
Sbjct: 74 DGTVVALDAETGKRLWRVDLDERLSGGVGADGGL---VFVGTEKGEVIALDAEDGKELWR 130
Query: 795 YSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHM 854
+ + + + + LV + T+ G + L TG+ + +
Sbjct: 131 AKLSSEVLSPPLVA-------------NGLVVVRTNDGRLTALDAA---TGERLWTYSRV 174
Query: 855 VQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALET 894
L L+G +SPV+ G V VG + + L+T
Sbjct: 175 T---PALTLRGS--ASPVIADGGVLVGFAGGKLVALNLQT 209
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ [Protein fate, Protein and peptide secretion and trafficking]. Length = 377 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 4e-08
Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 22/190 (11%)
Query: 148 LKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKL-HNNS 206
S G P+ ++ +++++ K +GE G L + S F Y+K H NS
Sbjct: 361 KASTTDGRPLPGVEVKVIDANGAKLSQGET--GRLLVR----GCSNF--GGYLKRPHLNS 412
Query: 207 ICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDV 266
++ +F TGD A + G + GR I G+ + + EIE+ L HP V
Sbjct: 413 T-------DAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAV 465
Query: 267 VDTAVVSHKHQ--GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMD 324
A+V++ + GE A +V K T F + + + K+ L IP R +D
Sbjct: 466 AQVAIVAYPDERLGERA--CAVVVPKPGCTLD--FAAMVAFLKAQKVALQYIPERLEVVD 521
Query: 325 SLPMTSSGKV 334
+LP T +GK+
Sbjct: 522 ALPATPAGKI 531
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 7e-08
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 8/121 (6%)
Query: 216 SQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VS 273
++ +F+TGD A G + + RK I ++G + EIE + HP V + A V
Sbjct: 439 AEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVP 498
Query: 274 HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGK 333
+ GE V L F+V ++ S E +K++ +P V DSLPMT GK
Sbjct: 499 DERSGEAVKL--FVVARDPGLSVE----ELKAYCKENFTGYKVPKHIVLRDSLPMTPVGK 552
Query: 334 V 334
+
Sbjct: 553 I 553
|
Length = 562 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 9e-08
Identities = 60/256 (23%), Positives = 105/256 (41%), Gaps = 45/256 (17%)
Query: 89 SSLKLLVLSGEVLPLS---MWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEM 145
S+LKL + G L L+ W K +I YG TE S + +++
Sbjct: 326 SALKLTLSGGMALQLATAERW----KEVTGCAICEGYGMTETSPVVSV----NPSQAIQV 377
Query: 146 STLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLS-----NGYFSESTFMPSEYV 200
T IG+P+ + +++ D + GE+ G LC+ GY+ P
Sbjct: 378 GT-----IGIPVPSTLCKVIDDDGNELPLGEV--GELCVKGPQVMKGYWQR----PEATD 426
Query: 201 KLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTL 260
++ + S + +TGD A + G + + RK I ++G + E+E L
Sbjct: 427 EILD-----------SDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVL 475
Query: 261 RGHPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 318
P V+ A V + GE + + F+V+K +T ++ + + + L +P
Sbjct: 476 AALPGVLQCAAIGVPDEKSGEAIKV--FVVVKPGETLTK---EQVMEHMRANLTGYKVPK 530
Query: 319 RFVFMDSLPMTSSGKV 334
F D LP T+ GK+
Sbjct: 531 AVEFRDELPTTNVGKI 546
|
Length = 562 |
| >gnl|CDD|199834 cd10276, BamB_YfgL, Beta-barrel assembly machinery (Bam) complex component B and related proteins | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 1e-07
Identities = 58/333 (17%), Positives = 109/333 (32%), Gaps = 86/333 (25%)
Query: 572 ADAKRSSVLWEIKL----EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT 627
VLW + I+ + V D V G++ + TG I W
Sbjct: 9 TPEFDPEVLWSKSVGNGGMAGIDLTPVVAGDM--VYAADANGQVSAFNATTGKIIWE--- 63
Query: 628 CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLY 687
L G + G+PA+ + ++
Sbjct: 64 -------------------------------------TSLSGKGFLGGTPAVG--NGKIF 84
Query: 688 VASTSGRLTAISVKALPFHTLW-----LHELEVPAFASLCITSANRHVICCLVDGHVVAL 742
V + SG L A+ K LW +L P T A+ + DG +
Sbjct: 85 VGTESGYLYALDAKDG--SELWRTEVSDSQLLSP------PTYADGKIYVGTGDGRLYYC 136
Query: 743 DS-SGSIIWRCRTGGPIFA--GPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGD 799
++ +G ++W + P + G V + NG++ + +G +WE+SV +
Sbjct: 137 NAETGKVVWNRTSTAPELSLRGGAAPVGAYDVVFVGDGNGTVVALNTGTGVDIWEFSVSE 196
Query: 800 PITASA---YIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQ 856
P + ID S + + ++S +++ ++ + +G+ S+
Sbjct: 197 PRGRTELPRMID-------SSVTYVVVGGYLYSTSYQGYLVALDFE-SGQFLWSRKA--- 245
Query: 857 EFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYC 889
S+ GRV+VG + +YC
Sbjct: 246 --------SGGTSTSTDANGRVYVGDGEGSLYC 270
|
BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization. Length = 358 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-07
Identities = 67/264 (25%), Positives = 111/264 (42%), Gaps = 45/264 (17%)
Query: 89 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 148
+SL+L+V E L + D + F I IL YG+TE S + LP +L
Sbjct: 898 ASLRLVVAGAEKLKPEVADAFEEKF-GIRILEGYGATETSPVASV----NLPDVLAADFK 952
Query: 149 -----KSVPIGLPISNCDIVLVESDTVKP----DEGEIYAGGLCLSNGYFS--ESTFMPS 197
K +G+P+ + +V+ +T + ++G I GG + GY E T +
Sbjct: 953 RQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKT---A 1009
Query: 198 EYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRM----AL 253
E +K + ++ TGD + G L R R KI G+ M A+
Sbjct: 1010 EVIKDIDGI-----------GWYVTGDKGHLDEDGFLTITDRYSRFAKIGGE-MVPLGAV 1057
Query: 254 EEIEHTLRGHPDVVDTAV-VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVS-SKL 311
EE G +VV V + +GE ++++ T + +K + S L
Sbjct: 1058 EEELAKALGGEEVVFAVTAVPDEKKGEKLVVLH--------TCGAEDVEELKRAIKESGL 1109
Query: 312 PLAMIPNRFVFMDSLPMTSSGKVD 335
P P+R+ +++LP+ SGK+D
Sbjct: 1110 PNLWKPSRYFKVEALPLLGSGKLD 1133
|
Length = 1146 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 2e-07
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 255 EIEHTLRGHPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLP 312
EIE+ L HP V D AV V + GE V A + + + + + + +W+ +L
Sbjct: 406 EIENLLVTHPKVADVAVFGVPDEEMGERV--KAVVQPADGADAGDALAAELIAWLRGRLA 463
Query: 313 LAMIPNRFVFMDSLPMTSSGK 333
P F D LP T +GK
Sbjct: 464 HYKCPRSIDFEDELPRTPTGK 484
|
Length = 502 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-07
Identities = 48/176 (27%), Positives = 65/176 (36%), Gaps = 40/176 (22%)
Query: 116 ISILNLYGSTEVSG--DCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPD 173
I IL YG TE S D L ++ G P+ ++ + D
Sbjct: 378 IPILEGYGLTETSAVVSVNPPDRFVLGTV-----------GKPLPGIEVKIA-------D 419
Query: 174 EGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGD 233
+GEI G + GY+ P + + +FRTGD + G
Sbjct: 420 DGEILVRGPNVMKGYYKN----PEATAE-----------AFTEDGWFRTGDLGELDEDGY 464
Query: 234 LVFLGRKDRTIKI-NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIV 288
LV GRK IK+ NG+ +A E IE L P + VV LVA IV
Sbjct: 465 LVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDDK----KFLVALIV 516
|
Length = 613 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-07
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 7/124 (5%)
Query: 219 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQG 278
+ TGD + G F+ R+ IK G+ ++ E+E+ + HP + D VV K
Sbjct: 399 WLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSI 458
Query: 279 ELVILVAFIVLKEKKTSS--EIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDY 336
+ AF+VL E +T S E F ++ K+P + LP SGK+
Sbjct: 459 RDEAIKAFVVLNEGETLSEEEFFAFCEQNMAKFKVPSYL-----EIRKDLPRNCSGKIIK 513
Query: 337 ASLS 340
+L
Sbjct: 514 KNLK 517
|
Length = 517 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 2e-07
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 15/123 (12%)
Query: 220 FRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSHKHQ 277
+ +GD A R G + F GR ++++G+ ++ IE L HP + AV V +
Sbjct: 382 YWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERV 441
Query: 278 GELVILVAFIVLKEKKTSS----EIFLSSIKSWVSSKLPLAMIPNRFV-FMDSLPMTSSG 332
G+ V+ A +VL++ T FL++ L P R+V LP T++
Sbjct: 442 GDQVM--AALVLRDGATFDPDAFAAFLAA-----QPDLGTKAWP-RYVRIAADLPSTATN 493
Query: 333 KVD 335
KV
Sbjct: 494 KVL 496
|
Length = 540 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (130), Expect = 2e-07
Identities = 69/296 (23%), Positives = 126/296 (42%), Gaps = 40/296 (13%)
Query: 57 LQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFP-N 115
++ ++++ + VP++ ++L + P S + VL+G P + ++ K+
Sbjct: 270 IEMHNVTHMCCVPTVFNILLKGNSLDLS---PRSGPVHVLTGGSPPPAA--LVKKVQRLG 324
Query: 116 ISILNLYGSTEVSGD---CTYFD-CKRLP--SILEMSTLKSVPIGLPISNCDIVLVESDT 169
+++ YG TE +G C + D RLP +E+ + V I L +++ D+ E+
Sbjct: 325 FQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSI-LGLADVDVKNKETQE 383
Query: 170 VKPDEG----EIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDF 225
P +G EI G + GY SE K + TGD
Sbjct: 384 SVPRDGKTMGEIVIKGSSIMKGYLKNPK-ATSEAFK---------------HGWLNTGDV 427
Query: 226 ARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVA 285
G + R I G+ ++ E+E+ L +P V++TAVV+ H A
Sbjct: 428 GVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCA 487
Query: 286 FIVLKEKKTSSEIFLSSIKS-------WVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
F+VL++ +T+ E + + + + LP M P + VF+ LP +GK+
Sbjct: 488 FVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKI 543
|
Length = 579 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 3e-07
Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 32/194 (16%)
Query: 151 VPIGLPISNCDIVLVESD-TVKPDE--GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSI 207
V +G PI C+I +V+ V PD G I G +++GY+ +N
Sbjct: 314 VEVGSPIDGCEIRIVDDAGEVLPDRTIGHIQIKGDNVTSGYY-------------NNPEA 360
Query: 208 CNCSVSCGSQTYFRTGD--FARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPD 265
S++ + +TGD F +++G LV GR I +NGQ +IE
Sbjct: 361 TKKSIT--PDGWLKTGDLGF---LRNGRLVITGRAKDIIIVNGQNYYPHDIERVAEQVEG 415
Query: 266 -----VVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 320
V V K Q E V++ F+ ++ IK V+ K+ L + +
Sbjct: 416 IKLGRVAACGVYDEKEQSEEVVI--FVEYRQSLDDFTPLALKIKRHVNKKMGLNI--DHV 471
Query: 321 VFMDSLPMTSSGKV 334
+ + S+P T+SGK+
Sbjct: 472 IPVRSIPKTTSGKI 485
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 5e-07
Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 9/116 (7%)
Query: 222 TGDFARRIQSGDLVFL-GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQ--G 278
TGD I D +F+ R IK G ++A E+E L HP + D AVV K + G
Sbjct: 416 TGDIGY-IDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAG 474
Query: 279 ELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
E + VAF+V + SEI IK +V+ ++ ++ F+DS+P SGK+
Sbjct: 475 E--VPVAFVV---RSNGSEITEDEIKQFVAKQVVFYKRIHKVFFVDSIPKAPSGKI 525
|
Length = 537 |
| >gnl|CDD|131425 TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 9e-07
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 221 RTGDFARRIQ-SGDLVF--LGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQ 277
R D R+ D F LGRKD +++ G ++ + L +P V AV +
Sbjct: 275 RRLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRLDGRR 334
Query: 278 GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
L AFIV+ E +E+ +++ + LP P+RF F LP T +GK+
Sbjct: 335 -----LKAFIVVAEDADEAEL-EIELRATAARHLPAPARPDRFRFGTELPRTGAGKL 385
|
This model represents the 4-coumarate--CoA ligase associated with biosynthesis of the 4-hydroxy cinnamyl (also called 4-coumaroyl) chromophore covalently linked to a Cys residue in photoactive yellow protein of Rhodobacter spp. and Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. Length = 386 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 2e-06
Identities = 52/240 (21%), Positives = 88/240 (36%), Gaps = 51/240 (21%)
Query: 118 ILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIG-LPISNCDIVLVESDT---VKPD 173
I+ YGSTE G+ + L + +G LP + +V + +T ++
Sbjct: 223 IVEFYGSTE--GNVGFI---NLFNKPGA-------VGRLPPAAIAVVKYDVETEEPIRDA 270
Query: 174 EG---EIYAG--GLCLS--------NGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYF 220
G ++ G GL L +GY + +E L + V YF
Sbjct: 271 NGFCIKVPPGEVGLLLGEITDRNPFDGYTDDEA---TEKKILRD-------VFKKGDAYF 320
Query: 221 RTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV----VSHKH 276
TGD RR G F+ R T + G+ ++ E+E L HP V + V V
Sbjct: 321 NTGDLVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVEEVLAKHPGVEEANVYGVEVPG-T 379
Query: 277 QGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV-FMDSLPMTSSGKVD 335
+G + A + L + + + + +LP P F+ ++ T + K
Sbjct: 380 EGRAGM--AALTLAP---GAAFDPQAFAAHLDEQLPAYARP-LFLRVQAAMETTGTFKYQ 433
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 28/114 (24%), Positives = 50/114 (43%)
Query: 220 FRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGE 279
+R GD+ G +V GR D T+ G RM EI + + +V ++ + +
Sbjct: 501 WRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPDG 560
Query: 280 LVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGK 333
+V F+ L T + L IK + + L +P+ + + +P T +GK
Sbjct: 561 GYRVVLFVHLAPGATLDDALLDRIKRTIRAGLSPRHVPDEIIEVPGIPHTLTGK 614
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652 |
| >gnl|CDD|199834 cd10276, BamB_YfgL, Beta-barrel assembly machinery (Bam) complex component B and related proteins | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 36/178 (20%), Positives = 62/178 (34%), Gaps = 22/178 (12%)
Query: 534 QELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKL---EGRIE 590
ELW+ + SP +D ++VG+ + +A+ V+W E +
Sbjct: 101 SELWRTEVSDSQLLSPPTY---ADGKIYVGTGDGRLYYCNAETGKVVWNRTSTAPELSLR 157
Query: 591 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT---------CGEVKCQ--PVVDA 639
AA + + V VG G + L+ TG W F + VV
Sbjct: 158 GGAAPVGAYDVVFVGDGNGTVVALNTGTGVDIWEFSVSEPRGRTELPRMIDSSVTYVVVG 217
Query: 640 PRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTA 697
++ S+ L ALDF + + ++ G + + +YV G L
Sbjct: 218 GY--LYSTSYQGYLVALDFESGQFLWSRKASG-GTSTSTDA--NGRVYVGDGEGSLYC 270
|
BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization. Length = 358 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 4e-06
Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 7/123 (5%)
Query: 219 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSHKH 276
+F TGD A G + R IK G+ ++ ++E+ GHP V + AV V H
Sbjct: 411 FFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPK 470
Query: 277 QGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDY 336
E +L+ + LK +T++ I ++ K+ +P+ F+D++P T++GK+
Sbjct: 471 WDERPLLI--VQLKPGETATR---EEILKYMDGKIAKWWMPDDVAFVDAIPHTATGKILK 525
Query: 337 ASL 339
+L
Sbjct: 526 TAL 528
|
Length = 542 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 4e-06
Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 31/189 (16%)
Query: 153 IGLPISNCDIVLVESD--TVKPDE-GEIYAGGLCLSNGYFS--ESTFMPSEYVKLHNNSI 207
IGLP+ + +I LV+ D V P E GE++ G + GY+ E+T E +K
Sbjct: 380 IGLPVPSTEIKLVDDDGNEVPPGEPGELWVKGPQVMLGYWQRPEAT---DEVIK------ 430
Query: 208 CNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVV 267
+ TGD A + G L + RK I ++G + EIE + HP V+
Sbjct: 431 ---------DGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVL 481
Query: 268 DTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDS 325
+ A V + GE V + F+V K+ + E + + L +P F D
Sbjct: 482 EVAAVGVPSEVSGEAVKI--FVVKKDPSLTEE----ELITHCRRHLTGYKVPKLVEFRDE 535
Query: 326 LPMTSSGKV 334
LP ++ GK+
Sbjct: 536 LPKSNVGKI 544
|
Length = 560 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 7e-06
Identities = 51/194 (26%), Positives = 80/194 (41%), Gaps = 29/194 (14%)
Query: 149 KSVP--IGLPISNCDIVLVESDT---VKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKL 202
K VP IG+P + + +++ +T + P E GEI G + GY+++ P E +
Sbjct: 372 KRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGYWNK----PEETAAV 427
Query: 203 HNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRG 262
+ + TGD + G RK I +G + E+E L
Sbjct: 428 LQDG------------WLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYE 475
Query: 263 HPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 320
H V + V ++GE V AF+VLKE SE + + L +P +
Sbjct: 476 HEKVQEVVTIGVPDPYRGETV--KAFVVLKEGTECSE---EELNQFARKYLAAYKVPKVY 530
Query: 321 VFMDSLPMTSSGKV 334
F D LP T+ GK+
Sbjct: 531 EFRDELPKTTVGKI 544
|
Length = 563 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 8e-06
Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 30/189 (15%)
Query: 153 IGLPISNCDIVLVESD--TVKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICN 209
IGLP+ + ++ + + D + E GEI G + GY++ P E K+
Sbjct: 382 IGLPLPSTEVSIRDDDGNDLPLGEPGEICIRGPQVMAGYWN----RPDETAKVMT----- 432
Query: 210 CSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDT 269
+ +FRTGD + G + RK I ++G + EIE + HP V++
Sbjct: 433 ------ADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEV 486
Query: 270 AV--VSHKHQGELVILVAFIVLKEKK-TSSEIFLSSIKSWVSSKLPLAMIPNRFV-FMDS 325
A V +H GE V L F+V K+ T ++ + + K P +FV F
Sbjct: 487 AAVGVPDEHSGEAVKL--FVVKKDPALTEEDVKAFCKERLTNYKRP------KFVEFRTE 538
Query: 326 LPMTSSGKV 334
LP T+ GK+
Sbjct: 539 LPKTNVGKI 547
|
Length = 557 |
| >gnl|CDD|199834 cd10276, BamB_YfgL, Beta-barrel assembly machinery (Bam) complex component B and related proteins | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 40/166 (24%), Positives = 65/166 (39%), Gaps = 34/166 (20%)
Query: 736 DGHVVALDS-SGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWE 794
+G V A ++ +G IIW G F G T ++ + + +G +Y+ + + G+ LW
Sbjct: 47 NGQVSAFNATTGKIIWETSLSGKGFLGG-TPAVGNGKIFVGTESGYLYALDAKDGSELWR 105
Query: 795 YSVGD-----PITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQ 849
V D P T + D + + T G ++ TGK
Sbjct: 106 TEVSDSQLLSPPTYA-----------------DGKIYVGTGDGRLYYC---NAETGKVVW 145
Query: 850 SKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALETQ 895
++ E L L+G ++PV VFVG D +AL T
Sbjct: 146 NRTSTAPE---LSLRG--GAAPVGAYDVVFVG--DGNGTVVALNTG 184
|
BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization. Length = 358 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 52/193 (26%), Positives = 81/193 (41%), Gaps = 38/193 (19%)
Query: 153 IGLPISNCDIVLVESDTVKPDEGEIYA----GGLCLS-----NGYFSESTFMPSEYVKLH 203
IGLPI + D +K D G + A G LC+ GY+ P E K+
Sbjct: 384 IGLPIPSTDAC------IKDDAGTVLAIGEIGELCIKGPQVMKGYWKR----PEETAKVM 433
Query: 204 NNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGH 263
+ + + TGD AR + G + + RK I ++G + EIE +
Sbjct: 434 D-----------ADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMM 482
Query: 264 PDVVDTAVVS--HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 321
P V++ A V + GE+V +V IV K+ ++E +K+ + L P
Sbjct: 483 PGVLEVAAVGVPDEKSGEIVKVV--IVKKDPALTAE----DVKAHARANLTGYKQPRIIE 536
Query: 322 FMDSLPMTSSGKV 334
F LP T+ GK+
Sbjct: 537 FRKELPKTNVGKI 549
|
Length = 560 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 1e-05
Identities = 45/177 (25%), Positives = 66/177 (37%), Gaps = 40/177 (22%)
Query: 116 ISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEG 175
I IL YG TE SG T + + +V G P+ ++ + E +G
Sbjct: 240 IPILEGYGLTETSGVATV-------NRPGDIRIGTV--GKPLPGVEVRIAE-------DG 283
Query: 176 EIYAGGLCLSNGYF--SESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGD 233
EI G + GY+ E+T + + + TGD R + G
Sbjct: 284 EILVRGPNVMKGYYKNPEAT-----------------AEALDEDGWLHTGDIGRLDEDGF 326
Query: 234 LVFLGRKDRTIKI-NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVL 289
LV RK I G+ +A + IE+ L+ P + VV L A IVL
Sbjct: 327 LVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQAVVVGDDRPY----LTALIVL 379
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-05
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 15/129 (11%)
Query: 220 FRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSHKHQ 277
+ +GD A R G F GR ++++G+ + IE L +PD + AV V
Sbjct: 383 YWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVV 442
Query: 278 GELVILVAFIVLKEKKT----SSEIFLSSIKSWVSSKLPLAMIPNRFV-FMDSLPMTSSG 332
G+ V+ A +VL + FL++ + + K P +V LP T++
Sbjct: 443 GDQVM--AALVLAPGAKFDPDAFAEFLAA-QPDLGPK----QWP-SYVRVCAELPRTATF 494
Query: 333 KVDYASLSA 341
KV LSA
Sbjct: 495 KVLKRQLSA 503
|
Length = 529 |
| >gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 4e-05
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 232 GDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKE 291
G + R IK G+ ++ ++E+ L GHP V + AVV+ H +A +V +
Sbjct: 403 GYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRG 462
Query: 292 KKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
+K + E + + +P+ +VF + +P TS+GK
Sbjct: 463 EKPTPEELNEHLLKAGFA---KWQLPDAYVFAEEIPRTSAGKF 502
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 6e-05
Identities = 51/242 (21%), Positives = 94/242 (38%), Gaps = 44/242 (18%)
Query: 53 IIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSG-EVLPLSMWDIISK 111
+ ++ S + P+L++ V ++ + +PS L+ ++ +G V P + ++
Sbjct: 165 LAQAIREIGASCVFGSPALLKNVA-RYCEENGIQLPS-LRRVLSAGAPVPPDLLRRFVAN 222
Query: 112 LFPNISILNLYGSTEVSGDCTYFDCKRLP-------SILEMST-----LKSVPIGLPISN 159
L P I YG+TE LP +L S V +G P+
Sbjct: 223 LMPEAEIHTPYGATEA-----------LPVASIEGREVLAESAEPPEAGAGVCVGHPVPG 271
Query: 160 CDIVLVE---------SDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNC 210
D+ ++ D ++ GE+ G + +S + + + E KL
Sbjct: 272 IDVRIIPIDDGPIASWDDDIELPPGEV--GEIIVSGPHVTREYYNRPEATKLA------- 322
Query: 211 SVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTA 270
+S G++ + R GD G L F GRK ++ G + +E HP V +A
Sbjct: 323 KISDGNRIWHRMGDLGYFDDQGRLWFCGRKAHRVETAGGTLFTVPVEQVFNRHPGVRRSA 382
Query: 271 VV 272
+V
Sbjct: 383 LV 384
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 7e-05
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 219 YFRTGDFARRIQSGDLVFLGRKDRTIKI---NGQRMALEEIEHTLRGHPDVVDTAVVSHK 275
+F +GD + G ++ KDR+ I G+ ++ E+E+ + HP V++ +VV+
Sbjct: 431 WFHSGDLGVKHPDG---YIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARP 487
Query: 276 HQ--GELVILVAFIVLKEKKTSSE--IFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSS 331
+ GE AF+ LK S+ I + +LP +P VF LP T++
Sbjct: 488 DERWGESP--CAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVF-GPLPKTAT 544
Query: 332 GKV 334
GK+
Sbjct: 545 GKI 547
|
Length = 567 |
| >gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 1e-04
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 219 YF-------RTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV 271
YF R GD+ + G +V GR D T+ G R+ EI + P+V+D+ V
Sbjct: 492 YFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQVEALPEVLDSLV 551
Query: 272 VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSS 331
+ + V + F+VL E T + + I++ + + L +P++ + + +P T S
Sbjct: 552 IGQEWPDGDVRMPLFVVLAEGVTLDDALRARIRTTIRTNLSPRHVPDKIIAVPDIPRTLS 611
Query: 332 GK 333
GK
Sbjct: 612 GK 613
|
Length = 655 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-04
Identities = 45/180 (25%), Positives = 66/180 (36%), Gaps = 38/180 (21%)
Query: 122 YGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE------SDTVKPDEG 175
YG TE T L + +T +G P+ C+I LV+ P G
Sbjct: 301 YGLTETCAGGT------LSDPGDTTTGH---VGPPLPCCEIKLVDVPEMGYFAKDDPPRG 351
Query: 176 EIYAGGLCLSNGYFS--ESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGD 233
EI G + GY+ E T +E +F TGD + G
Sbjct: 352 EICIRGPNVFKGYYKNPEKT---AEAFD--------------EDGWFHTGDIGEWLPDGT 394
Query: 234 LVFLGRKDRTIKI-NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEK 292
L + RK K+ G+ +ALE++E+ + P V V + LVA +V E
Sbjct: 395 LKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVDQICVYGDSLK---SFLVAIVVPDED 451
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 14/121 (11%)
Query: 219 YFRTGDFARRIQSGDLVFLGRKDRT--IKING-QRMALEEIEHTLRGHPDVVDTAVVSHK 275
+F TGD A G ++ KDR+ I I+G + ++ E+E L HP V+ AVV+
Sbjct: 417 WFHTGDLAVLHPDG---YIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKP 473
Query: 276 HQ--GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGK 333
GE + AF+ LK+ +++E I + L +P VF LP TS+GK
Sbjct: 474 DPKWGE--VPCAFVELKDGASATE---EEIIAHCREHLAGFKVPKAVVF-GELPKTSTGK 527
Query: 334 V 334
+
Sbjct: 528 I 528
|
Length = 545 |
| >gnl|CDD|236857 PRK11138, PRK11138, outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 42/183 (22%), Positives = 64/183 (34%), Gaps = 53/183 (28%)
Query: 716 PAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRC----------------RTGGPI 758
PA A + +A+R G V ALD +G IW +GG
Sbjct: 65 PAVAYNKVYAADRA-------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVT 117
Query: 759 FAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESC 818
AG +V I S G +Y+ E G + W+ V + +
Sbjct: 118 VAG--------GKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVS---------- 159
Query: 819 LSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRV 878
D LV + TS+G + L + G + + + L L+G+ S+P G
Sbjct: 160 ---DGLVLVHTSNGMLQALNES---DGAVKWTVN---LDVPSLTLRGE--SAPATAFGGA 208
Query: 879 FVG 881
VG
Sbjct: 209 IVG 211
|
Length = 394 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 5e-04
Identities = 56/303 (18%), Positives = 113/303 (37%), Gaps = 54/303 (17%)
Query: 53 IIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKL 112
+ ++ Y ++ L P+L+ + + + + +PS L+ ++ +G +P+++ + +
Sbjct: 254 LFAAIERYGVTNLFGSPALLERLGRYGE-ANGIKLPS-LRRVISAGAPVPIAVIERFRAM 311
Query: 113 FPN-ISILNLYGSTEVSGDCTYFDCKRLP-SILEMSTL-----------KSVPIGLPISN 159
P IL YG+TE LP S +E + + +G P+
Sbjct: 312 LPPDAEILTPYGATEA-----------LPISSIESREILFATRAATDNGAGICVGRPVDG 360
Query: 160 CDIVLVE-SDT----------VKPDE-GEIYAGGLCLSNGYFS--ESTFMPSEYVKLHNN 205
++ ++ SD + E GEI G ++ Y++ E+T K+ +
Sbjct: 361 VEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEAT----RLAKIPDG 416
Query: 206 SICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPD 265
+ R GD G L F GRK ++ G + E HP
Sbjct: 417 Q---------GDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPG 467
Query: 266 VVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDS 325
V +A+V G ++ + S +++ +++ P RF+ S
Sbjct: 468 VKRSALVGVGVPGAQRPVLCVELEPGVACSKSALYQELRA-LAAAHPHTAGIERFLIHPS 526
Query: 326 LPM 328
P+
Sbjct: 527 FPV 529
|
Length = 552 |
| >gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2) | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 5e-04
Identities = 69/299 (23%), Positives = 118/299 (39%), Gaps = 50/299 (16%)
Query: 29 LSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVP 88
L++++ ++ P +K N + + Y I + L A + Q ++++
Sbjct: 207 LTSVMNGMHTILIPPALMKNNPLLWFQIISKYKIKDTLVKSRDLHWALNAHRDQKDINL- 265
Query: 89 SSLKLLVLSGEVLP--LSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPS----- 141
S L++L+++ P L+ +F + + STE S R S
Sbjct: 266 SCLRMLIVADGARPWSLASCQAFLNVFQSKGLSPCASSTEASTVANRRIGTRGYSGPIPG 325
Query: 142 --ILEMSTLK---------SVPIGLPISNCDIVL-------VESDTVKP---DE-GEIYA 179
+L+M+ L+ P LP+ + +V+ V DT DE GEI+
Sbjct: 326 RGVLDMAALRHGVVRVDSEDKPSSLPLQDSGMVMPGAQMCIVNPDTPPLCRTDEIGEIWV 385
Query: 180 GGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGD--FARR-------IQ 230
+ Y+ T M ++ NS S G Y RTG F +
Sbjct: 386 NSSANATSYYG-LTGMTKNTFEVFPNSS---SDGIGENPYVRTGLLGFVGPTSHSMGPVV 441
Query: 231 SGDLVF-LGRKDRTIKINGQRMALEEIEHT-LRGHPDVV--DTAVVSHKHQGELVILVA 285
L+F +G D T++++G R ++IE T LR HP + AV S E V++VA
Sbjct: 442 DMGLLFVVGSIDETLEVSGLRHNPDDIEATVLRVHPMIYRGRIAVFSVT---ERVVVVA 497
|
Dip2 proteins show sequence similarity to other members of the adenylate forming enzyme family, including insect luciferase, acetyl CoA ligases and the adenylation domain of nonribosomal peptide synthetases (NRPS). However, its function may have diverged from other members of the superfamily. In mouse embryo, Dip2 homolog A plays an important role in the development of both vertebrate and invertebrate nervous systems. Dip2A appears to regulate cell growth and the arrangement of cells in organs. Biochemically, Dip2A functions as a receptor of FSTL1, an extracellular glycoprotein, and may play a role as a cardiovascular protective agent. Length = 556 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 6e-04
Identities = 50/201 (24%), Positives = 77/201 (38%), Gaps = 29/201 (14%)
Query: 151 VPIGLPISNCDIVLV-ESDTVKPDE--GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSI 207
V +G PI I +V E + P+ G + G +++GY+ N
Sbjct: 374 VELGRPIPGVAIRIVDEDGALLPEGEVGRLQVRGPTVTSGYY--------------RNPE 419
Query: 208 CNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVV 267
N +FRTGD + G L GR+ I ING EIE + P V
Sbjct: 420 ANAEA-FTEDGWFRTGDLGF-LHDGRLTITGREKDMIIINGVNYYNHEIEAAVEQVPGVE 477
Query: 268 D--TAVVSHKHQGELVILVAFIVLKEKKTSSEIF--LSSIKSWVSSKL---PLAMIPNRF 320
TA + + G +A + + L +I++ V+ K+ P +IP
Sbjct: 478 PSFTAACAVRDAGSGTDELAVFFVPRYDLDDRLAALLRAIRTHVARKIGIAPAYVIP--- 534
Query: 321 VFMDSLPMTSSGKVDYASLSA 341
+ + P TS GK+ A L
Sbjct: 535 LAKEDFPKTSLGKIQRAQLRK 555
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 7e-04
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 10/122 (8%)
Query: 219 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSH--KH 276
+ RTGD + G L R I+ G+ + ++E+ + P+VV+ AV+ +
Sbjct: 431 WLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDK 490
Query: 277 QGE---LVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGK 333
GE V ++A + ++T+ ++ + +LP M+P + F+D + TS GK
Sbjct: 491 WGERPLAVTVLAPGIEPTRETAER-----LRDQLRDRLPNWMLPEYWTFVDEIDKTSVGK 545
Query: 334 VD 335
D
Sbjct: 546 FD 547
|
Length = 576 |
| >gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 7e-04
Identities = 63/255 (24%), Positives = 106/255 (41%), Gaps = 26/255 (10%)
Query: 90 SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLK 149
SL+ +V +GE L L + + + + F I IL+ GSTEV F R+ + TL
Sbjct: 261 SLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVG---QTFVSNRVDE-WRLGTLG 316
Query: 150 SVPIGLPISNCDIVLVESDTVKPD-EGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSIC 208
V LP +V + T P EG+++ G ++ GY++ P V
Sbjct: 317 RV---LPPYEIRVVAPDGTTAGPGVEGDLWVRGPAIAKGYWNR----PDSPVA------- 362
Query: 209 NCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVD 268
++ + T D G + + R D T I G + E+E + V +
Sbjct: 363 -------NEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAE 415
Query: 269 TAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPM 328
AVV+ + L AF+V T + + + ++L +P+RF +D LP
Sbjct: 416 AAVVAVRESTGASTLQAFLVATSGATIDGSVMRDLHRGLLNRLSAFKVPHRFAVVDRLPR 475
Query: 329 TSSGKVDYASLSAST 343
T +GK+ +L +
Sbjct: 476 TPNGKLVRGALRKQS 490
|
Length = 705 |
| >gnl|CDD|224437 COG1520, COG1520, FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 8e-04
Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 12/117 (10%)
Query: 555 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADF----SQVVVGCY--- 607
D ++ GS+ K +C DA ++W G ++ S +V +G
Sbjct: 248 YVDGGVYAGSYGGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAGADGKVYIGFTDND 307
Query: 608 ---KGKIYFLDYLTGDIY--WTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFR 659
G +Y L + G W++ G V + L + G LYA
Sbjct: 308 GRGSGSLYALADVPGGTLLKWSYPVGGGYSLSTVAGSDGTLYFGGDDGRGLYAFRDG 364
|
Length = 370 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 8e-04
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 9/119 (7%)
Query: 219 YFRTGDFARRIQSGDLVFLGR-KDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSHK 275
+F TGD + + G + +GR KD I G + +E+E + P VV++AV V H
Sbjct: 378 FFITGDLGKIDERGYVHIVGRGKDLIIS-GGYNVYPKEVEGEIDELPGVVESAVIGVPHP 436
Query: 276 HQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
GE V A +V K E ++I + + +L P R F+D LP + GKV
Sbjct: 437 DFGEGV--TAVVVPKPGAALDE---AAILAALKGRLARFKQPKRVFFVDELPRNTMGKV 490
|
Length = 504 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 8e-04
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 17/126 (13%)
Query: 222 TGDFARRIQSGDLVFLGRKDRTIKINGQRMAL---EEIEHTLRGHPDVVDTAVVS--HKH 276
TGD + G + GR R KI G+ ++L EE+ L PD A VS
Sbjct: 1014 TGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELW--PDA-LHAAVSIPDAR 1070
Query: 277 QGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK-LPLAMIPNRFVFMDSLPMTSSGKVD 335
+GE +IL+ T+S+ ++ + + M+P + +D +P+ +GK+D
Sbjct: 1071 KGERIILLT--------TASDATRAAFLAHAKAAGASELMVPAEIITIDEIPLLGTGKID 1122
Query: 336 YASLSA 341
Y +++
Sbjct: 1123 YVAVTK 1128
|
Length = 1140 |
| >gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 49/192 (25%), Positives = 74/192 (38%), Gaps = 39/192 (20%)
Query: 153 IGLPISNCDIVLVESDTVKP----DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSIC 208
+G PI ++ + D + GEI G + +GY ++ P
Sbjct: 347 LGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAPIDP------------ 394
Query: 209 NCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVD 268
+F TGD + G LV GR I + G+ + EIE V +
Sbjct: 395 --------DDWFPTGDLGYLVDGG-LVVCGRAKELITVAGRNIFPTEIERVAAQVRGVRE 445
Query: 269 TAVV-----SHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFM 323
AVV + LVI F E SE+ ++ V+S+ ++P+ VF+
Sbjct: 446 GAVVAVGTGEGSARPGLVIAAEFRGPDEAGARSEV----VQR-VASEC--GVVPSDVVFV 498
Query: 324 D--SLPMTSSGK 333
SLP TSSGK
Sbjct: 499 APGSLPRTSSGK 510
|
Length = 525 |
| >gnl|CDD|216242 pfam01011, PQQ, PQQ enzyme repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.001
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 602 VVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVV 637
V VG G++Y LD TG + W F+T G P+
Sbjct: 3 VYVGTADGRLYALDAKTGKVLWKFKTGGPDDSSPLG 38
|
The family represent a single repeat of a beta propeller. This propeller has been found in several enzymes which utilise pyrrolo-quinoline quinone as a prosthetic group. Length = 38 |
| >gnl|CDD|222231 pfam13570, YWTD, YWTD domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.001
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 860 KLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALE 893
+ G + SSP + GG V+VG D +Y +
Sbjct: 6 SFDTGGPVVSSPAVAGGLVYVGTGDGTLYALDAA 39
|
The YWTD repeat appears on the low-density lipoprotein receptor (LDLR) up to six times, being preceded and followed by an EGF domain. The region of the LDLR carrying these two types of repeat appears to control the related processes of lipoprotein release at low pH and the recycling of the receptor to the cell surface. The YWTD repeats form a six-bladed beta-propeller that packs tightly against the C-terminal EGF module. Length = 39 |
| >gnl|CDD|199835 cd10277, PQQ_ADH_I, Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase) | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 45/155 (29%)
Query: 670 GGSIFG--SPAIDEVHD-VLYVASTSGRLTAISVKALPFHT---LWLHELEVPAFASLCI 723
GG G S I V+D V+YV ++ R+ AI K T LW ++ +P C
Sbjct: 46 GGKQRGQESQPI--VNDGVMYVTTSYNRVFAIDAK-----TGKELWKYKHRLPEDIRPCC 98
Query: 724 TSANR-------HVICCLVDGHVVALDS-SGSIIWRCR----------TGGPIFAGPCTS 765
NR V +D H+VALD+ +G ++W+ + T P+
Sbjct: 99 DVVNRGVALYGDKVYFGTLDAHLVALDAKTGKVVWKKKVADYKAGYSMTLAPLVVK---- 154
Query: 766 FALPSQVLICSRNGS------IYSFEQESGNLLWE 794
+V++ G I + + E+G +W
Sbjct: 155 ----GKVIVGVSGGEFGVRGFIAALDAETGKEVWR 185
|
This bacterial family of homodimeric ethanol dehydrogenases utilize pyrroloquinoline quinone (PQQ) as a cofactor. It represents proteins whose expression may be induced by ethanol, and which are similar to quinoprotein methanol dehydrogenases, but have higher specificities for ethanol and other primary and secondary alcohols. Dehydrogenases with PQQ cofactors, such as ethanol, methanol, and membrane-bound glucose dehydrogenases, form an 8-bladed beta-propeller. Length = 529 |
| >gnl|CDD|224437 COG1520, COG1520, FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 26/186 (13%)
Query: 534 QELWKVHMESCVDASPL--VVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIEC 591
W + + S + +Y+ + +A+ ++ W K+ I
Sbjct: 174 TLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGR 233
Query: 592 SA----------AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAP- 640
+A V D V G Y GK+ LD TG++ W+F G V+ + P
Sbjct: 234 TAISTTPAVDGGPVYVD-GGVYAGSYGGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPV 292
Query: 641 -----RQLIWCGSHDH----NLYALDFR--NYRCVYKLPCGGSIFGSPAIDEVHDVLYVA 689
+ I +D +LYAL + P GG S LY
Sbjct: 293 AGADGKVYIGFTDNDGRGSGSLYALADVPGGTLLKWSYPVGGGYSLSTVAGSD-GTLYFG 351
Query: 690 STSGRL 695
GR
Sbjct: 352 GDDGRG 357
|
Length = 370 |
| >gnl|CDD|236857 PRK11138, PRK11138, outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.002
Identities = 71/361 (19%), Positives = 119/361 (32%), Gaps = 130/361 (36%)
Query: 573 DAKRSSVLWEIKLEGRIEC---------SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYW 623
DA +W + L + S V +V +G KG++Y L+ G++ W
Sbjct: 85 DADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAW 144
Query: 624 TFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVH 683
+ GE +PVV
Sbjct: 145 QTKVAGEALSRPVVSD-------------------------------------------- 160
Query: 684 DVLYVASTSGRLTAISVKALPFHT---LWLHELEVPAFASLCITSA----NRHVICCLVD 736
++ V +++G L A++ W L+VP+ +L SA I +
Sbjct: 161 GLVLVHTSNGMLQALNES-----DGAVKWTVNLDVPSL-TLRGESAPATAFGGAIVGGDN 214
Query: 737 GHV-VALDSSGSIIWRCR----TGG------------PIFAGPCTSFALPSQVLICSRNG 779
G V L G +IW+ R TG P+ G +AL + NG
Sbjct: 215 GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG-VVYAL-------AYNG 266
Query: 780 SIYSFEQESGNLLW--EY-SVGDPITASAYI---DEHLQLKLESCLSIDRLVCICTSSGS 833
++ + + SG ++W EY SV D I D++ DR+ + T G
Sbjct: 267 NLVALDLRSGQIVWKREYGSVNDFAVDGGRIYLVDQN-----------DRVYALDTRGG- 314
Query: 834 IHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALE 893
+QS +L + ++PV+ G + VG + Y++ I E
Sbjct: 315 ----------VELWSQS-----------DLLHRLLTAPVLYNGYLVVGDSEGYLHWINRE 353
Query: 894 T 894
Sbjct: 354 D 354
|
Length = 394 |
| >gnl|CDD|216242 pfam01011, PQQ, PQQ enzyme repeat | Back alignment and domain information |
|---|
Score = 36.1 bits (84), Expect = 0.002
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 728 RHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGP 762
V DG + ALD +G ++W+ +TGGP + P
Sbjct: 1 GVVYVGTADGRLYALDAKTGKVLWKFKTGGPDDSSP 36
|
The family represent a single repeat of a beta propeller. This propeller has been found in several enzymes which utilise pyrrolo-quinoline quinone as a prosthetic group. Length = 38 |
| >gnl|CDD|222231 pfam13570, YWTD, YWTD domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.002
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 619 GDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALD 657
G++ W+F T G V P V L++ G+ D LYALD
Sbjct: 1 GEVLWSFDTGGPVVSSPAVAG--GLVYVGTGDGTLYALD 37
|
The YWTD repeat appears on the low-density lipoprotein receptor (LDLR) up to six times, being preceded and followed by an EGF domain. The region of the LDLR carrying these two types of repeat appears to control the related processes of lipoprotein release at low pH and the recycling of the receptor to the cell surface. The YWTD repeats form a six-bladed beta-propeller that packs tightly against the C-terminal EGF module. Length = 39 |
| >gnl|CDD|215989 pfam00550, PP-binding, Phosphopantetheine attachment site | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 0.002
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 363 QVIRKAFGHALMVEEVLH-HDNFFTMGGNSIAAAHVAH------NLGIDMRLIYNFPTPS 415
+ +R+ L + + + D+ F +G +S+ A + + I ++ PT
Sbjct: 1 ERLREIVAEVLGIPDEIDPDDDLFDLGLDSLLAVELLARLEEEFGVEIPPSDLFEHPTLG 60
Query: 416 KL 417
+L
Sbjct: 61 EL 62
|
A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of Vibrio anguillarum angR has the attachment serine replaced by an alanine. Length = 66 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Query: 219 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEH-TLRGHPDVVD-TAVVSHKH 276
++ TGD R + G + GR R KI G+ ++LE +E L PD TA+ S
Sbjct: 592 WYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDAS 651
Query: 277 QGELVILVAFIVLKEKKTSSEIFLSSI-KSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVD 335
+GE LV F T SE+ + + +P +P ++ LP+ SGK D
Sbjct: 652 KGE--ALVLF------TTDSELTREKLQQYAREHGVPELAVPRDIRYLKQLPLLGSGKPD 703
Query: 336 YASL 339
+ +L
Sbjct: 704 FVTL 707
|
Length = 718 |
| >gnl|CDD|234102 TIGR03075, PQQ_enz_alc_DH, PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 23/145 (15%)
Query: 675 GSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVP--AFASLCITSANR---- 728
P + V V+YV ++ R+ A+ K LW ++ ++P +C NR
Sbjct: 63 SQPLV--VDGVMYVTTSYSRVYALDAK--TGKELWKYDPKLPDDIIPVMCCDVVNRGAAL 118
Query: 729 ---HVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALP--SQVLICSRN---- 778
V +D +VALD +G ++W + G T+ L +V+
Sbjct: 119 YDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKKGYTITAAPLVVKGKVITGISGGEFG 178
Query: 779 --GSIYSFEQESGNLLWE-YSVGDP 800
G + +++ ++G L+W Y+V
Sbjct: 179 VRGYVTAYDAKTGKLVWRRYTVPGD 203
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. Length = 526 |
| >gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 42/221 (19%), Positives = 72/221 (32%), Gaps = 44/221 (19%)
Query: 54 IHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLF 113
+ ++ + + + PS + + + + SLK + E M +I F
Sbjct: 175 LELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRF 234
Query: 114 PNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPD 173
++YG TE G P E + + I +IV E+ PD
Sbjct: 235 -GCKAFDIYGLTEGFG----------PGAGECTERNGLHIWEDHFIFEIVDPETGEQLPD 283
Query: 174 --EGEIYAGGLCLSNGYFSESTFMP------SEYVKLHNNSICNCSVSCGSQTYFRTGDF 225
GE+ L+ MP + + ++ C C G
Sbjct: 284 GERGELVIT--TLTKEG------MPLIRYRTGDITVILSDP-CGC------------GRT 322
Query: 226 ARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDV 266
RRI+ GR D + + G + +IE L P+V
Sbjct: 323 HRRIER----IEGRSDDMLIVRGVNVFPSQIERVLLQIPEV 359
|
Length = 438 |
| >gnl|CDD|215552 PLN03051, PLN03051, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 15/125 (12%)
Query: 221 RTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTL-RGHPDVVDTAVVS----HK 275
R GD +R G GR D T+ + G + + EIE R + +TA V
Sbjct: 360 RHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDG 419
Query: 276 HQGELVILVAFIVLKEKKTSSEI------FLSSIKSWVSSKLPLAMIPNRFVFMDSLPMT 329
LVI + K+ + F +I++ ++ PL + +R + LP
Sbjct: 420 GPELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTNLN---PLFKV-SRVKIVPELPRN 475
Query: 330 SSGKV 334
+S K+
Sbjct: 476 ASNKL 480
|
Length = 499 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 7/117 (5%)
Query: 219 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQ- 277
+F TGD A G + R IK G+ ++ +IE+ HP V + A ++ H
Sbjct: 410 WFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPK 469
Query: 278 -GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGK 333
E +LV K+ +E+ + ++ K+ IP+ VF+D++P T++GK
Sbjct: 470 WDERPLLVVV-----KRPGAEVTREELLAFYEGKVAKWWIPDDVVFVDAIPHTATGK 521
|
Length = 539 |
| >gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.004
Identities = 32/120 (26%), Positives = 46/120 (38%), Gaps = 7/120 (5%)
Query: 221 RTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTL-RGHPDVVDTAVVSHKHQG- 278
R GD R G GR D T+ + G +++ EIE V++TA + G
Sbjct: 592 RHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGG 651
Query: 279 ---ELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKL-PLAMIPNRFVFMDSLPMTSSGKV 334
+LVI S + KL PL + + V + S P T+S KV
Sbjct: 652 GPEQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLNPLFKV-SAVVIVPSFPRTASNKV 710
|
Length = 728 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.004
Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 27/191 (14%)
Query: 150 SVPIGLPISNCDIVLVESDTVKP----DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNN 205
S+ + LP D+V ++ D K + GE+ G ++ GY++ +V
Sbjct: 366 SIGLMLPGIELDVVSLD-DPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFV----- 419
Query: 206 SICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPD 265
F TGD G + RK I G + + IE + HP
Sbjct: 420 -----------GDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPG 468
Query: 266 VVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFM 323
V + V + +++GE AF+ L+ + L ++++++ KL +P F+
Sbjct: 469 VQEVIVIGIPDQYRGEAA--KAFVKLRPG--AKPFSLDELRAFLAGKLGKHELPVAVEFV 524
Query: 324 DSLPMTSSGKV 334
D LP T GK+
Sbjct: 525 DELPRTPVGKL 535
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 900 | |||
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 100.0 | |
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 100.0 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 100.0 | |
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 99.98 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 99.98 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 99.97 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 99.97 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.96 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.96 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 99.96 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 99.96 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 99.94 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 99.94 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 99.94 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 99.93 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 99.92 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 99.89 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.87 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.87 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 99.86 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.84 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 99.82 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.82 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 99.82 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 99.82 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.81 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 99.8 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.72 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.7 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.69 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.68 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.68 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.67 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.62 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.62 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.61 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.6 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.6 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.6 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.57 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.56 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.55 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.54 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.51 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.51 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.51 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.51 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.5 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.48 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.48 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.47 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.45 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.45 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.44 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.44 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.44 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.44 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.44 | |
| COG4993 | 773 | Gcd Glucose dehydrogenase [Carbohydrate transport | 99.43 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.41 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.4 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.39 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.39 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.39 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.39 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.38 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.38 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.37 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.37 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.36 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.35 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.33 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.33 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.32 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.32 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.32 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.31 | |
| PF13193 | 73 | AMP-binding_C: AMP-binding enzyme C-terminal domai | 99.3 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.29 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.29 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.28 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.28 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.28 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.28 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.24 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.24 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.23 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.23 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.23 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.22 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.2 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.2 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.19 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.19 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.18 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.18 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.17 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.16 | |
| PTZ00421 | 493 | coronin; Provisional | 99.16 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.15 | |
| PTZ00420 | 568 | coronin; Provisional | 99.14 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.14 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.14 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.14 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.14 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.14 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.13 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.12 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.11 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.1 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.1 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 99.08 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.07 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.05 | |
| PTZ00420 | 568 | coronin; Provisional | 99.05 | |
| PTZ00421 | 493 | coronin; Provisional | 99.04 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.04 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.01 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.0 | |
| COG4993 | 773 | Gcd Glucose dehydrogenase [Carbohydrate transport | 98.98 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 98.98 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 98.93 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.92 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 98.91 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 98.91 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.9 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.9 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 98.89 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 98.88 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 98.86 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 98.84 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 98.84 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.83 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 98.83 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.82 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.8 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 98.79 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 98.79 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 98.79 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 98.78 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 98.75 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 98.73 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 98.73 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 98.71 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 98.71 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 98.7 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.7 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.68 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 98.68 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 98.67 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 98.65 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 98.65 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 98.65 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 98.64 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 98.61 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.61 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 98.59 | |
| PF00550 | 67 | PP-binding: Phosphopantetheine attachment site; In | 98.58 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 98.57 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 98.56 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 98.54 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 98.53 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.52 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.52 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 98.5 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 98.48 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 98.48 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.47 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 98.47 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 98.43 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.41 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 98.39 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.36 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.34 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.32 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.32 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 98.32 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.29 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.29 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.27 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.25 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 98.24 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 98.24 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 98.24 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 98.23 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 98.23 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.21 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 98.2 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 98.2 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.18 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 98.12 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.12 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.08 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 98.07 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.07 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.07 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.05 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 98.04 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 98.04 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 98.03 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 98.02 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.02 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 98.02 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 98.01 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.01 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 98.0 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 97.98 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 97.97 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 97.95 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 97.95 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 97.93 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 97.93 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.92 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 97.91 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 97.9 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 97.9 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 97.89 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 97.88 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 97.88 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 97.86 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 97.86 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 97.85 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 97.84 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.83 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 97.82 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 97.79 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 97.78 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 97.75 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 97.72 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.72 | |
| PF13570 | 40 | PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A. | 97.69 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 97.69 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 97.68 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.68 | |
| PF01011 | 38 | PQQ: PQQ enzyme repeat family.; InterPro: IPR00237 | 97.67 | |
| PF13570 | 40 | PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A. | 97.66 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 97.66 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.63 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 97.61 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 97.59 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 97.59 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 97.59 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.53 | |
| PF01011 | 38 | PQQ: PQQ enzyme repeat family.; InterPro: IPR00237 | 97.52 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 97.47 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.47 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.46 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 97.46 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.45 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 97.43 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 97.39 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 97.39 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 97.38 | |
| PF14535 | 96 | AMP-binding_C_2: AMP-binding enzyme C-terminal dom | 97.37 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 97.35 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 97.33 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.3 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 97.3 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.29 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.24 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.23 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 97.19 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 97.19 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 97.19 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 97.17 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 97.17 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 97.16 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.15 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 97.14 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.12 | |
| CHL00124 | 82 | acpP acyl carrier protein; Validated | 97.11 | |
| smart00823 | 86 | PKS_PP Phosphopantetheine attachment site. Phospho | 97.11 | |
| PRK00982 | 78 | acpP acyl carrier protein; Provisional | 97.1 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 97.1 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 97.09 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 97.08 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.08 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 97.07 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 97.07 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.07 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.06 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 97.01 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 97.0 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 96.98 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 96.93 | |
| PRK09184 | 89 | acyl carrier protein; Provisional | 96.92 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 96.89 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.87 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.86 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 96.86 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 96.85 | |
| smart00564 | 33 | PQQ beta-propeller repeat. Beta-propeller repeat o | 96.83 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 96.77 | |
| KOG2103 | 910 | consensus Uncharacterized conserved protein [Funct | 96.71 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 96.71 | |
| PRK12449 | 80 | acyl carrier protein; Provisional | 96.7 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 96.69 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.68 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 96.67 | |
| TIGR00517 | 77 | acyl_carrier acyl carrier protein. S (Ser) at posi | 96.64 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 96.62 | |
| PRK05883 | 91 | acyl carrier protein; Validated | 96.6 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.59 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 96.58 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 96.58 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 96.58 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 96.57 | |
| COG3433 | 74 | Aryl carrier domain [Secondary metabolites biosynt | 96.56 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.47 | |
| smart00564 | 33 | PQQ beta-propeller repeat. Beta-propeller repeat o | 96.46 | |
| PRK05828 | 84 | acyl carrier protein; Validated | 96.43 | |
| PRK07081 | 83 | acyl carrier protein; Provisional | 96.4 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 96.35 | |
| PRK07117 | 79 | acyl carrier protein; Validated | 96.32 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.26 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 96.22 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 96.22 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 96.16 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 96.14 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 96.12 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 96.1 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 96.09 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 96.09 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 96.08 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.05 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 96.04 | |
| PRK05350 | 82 | acyl carrier protein; Provisional | 96.0 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 95.99 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 95.91 | |
| KOG2103 | 910 | consensus Uncharacterized conserved protein [Funct | 95.9 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 95.87 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 95.86 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 95.79 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 95.79 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 95.73 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 95.7 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 95.69 | |
| KOG1027 | 903 | consensus Serine/threonine protein kinase and endo | 95.69 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 95.67 | |
| PRK07639 | 86 | acyl carrier protein; Provisional | 95.62 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 95.58 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 95.54 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 95.54 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 95.54 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.5 | |
| COG0236 | 80 | AcpP Acyl carrier protein [Lipid metabolism / Seco | 95.48 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.45 | |
| PRK05087 | 78 | D-alanine--poly(phosphoribitol) ligase subunit 2; | 95.37 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.33 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.32 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 95.26 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 95.21 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 95.11 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 95.07 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 95.05 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 95.03 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 94.83 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 94.82 | |
| PTZ00171 | 148 | acyl carrier protein; Provisional | 94.75 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.71 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 94.68 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 94.57 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 94.56 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 94.54 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 94.52 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 94.43 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 94.39 | |
| PRK08172 | 82 | putative acyl carrier protein IacP; Validated | 94.37 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.28 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.18 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 94.02 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 93.89 | |
| KOG1027 | 903 | consensus Serine/threonine protein kinase and endo | 93.87 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 93.77 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 93.75 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 93.67 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 93.64 | |
| PLN02247 | 606 | indole-3-acetic acid-amido synthetase | 93.6 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 93.41 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 93.26 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 93.2 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 93.17 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 93.14 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 93.13 |
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-54 Score=595.48 Aligned_cols=400 Identities=26% Similarity=0.426 Sum_probs=344.7
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
+.++++++|++++.+|++||.+++++|.+|+.|+++++++ .....+|..+++.++++++|++.++|++++.++....
T Consensus 3903 ~~~~~~~~~~~~~~~s~~fd~s~~~~~~~l~~G~~l~i~~-~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~-- 3979 (4334)
T PRK05691 3903 PYLALSEADVIAQTASQSFDISVWQFLAAPLFGARVEIVP-NAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDR-- 3979 (4334)
T ss_pred HhcCCCccceEEEecCCchhHHHHHHHHHHhCCCEEEEcC-ccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhcc--
Confidence 5689999999999999999999999999999999999985 4456789999999999999999999999998875422
Q ss_pred cCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEE
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 162 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 162 (900)
..+++||.+++|||++++++.+.|.+.+|+++++|.||+||++.++++....... ......++|+|++++++
T Consensus 3980 ---~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~-----~~~~~~~iG~p~~~~~~ 4051 (4334)
T PRK05691 3980 ---QALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLAS-----TRGSYLPIGSPTDNNRL 4051 (4334)
T ss_pred ---ccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEccccc-----ccCCcCCCCCccCCCEE
Confidence 2267899999999999999999999998999999999999999888765433211 12245789999999999
Q ss_pred EEecCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcc
Q 002615 163 VLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 239 (900)
Q Consensus 163 ~i~d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 239 (900)
+|+|+.. +.+..|||+|+|+++++||+++|+.|+++|+..+.. ..+.+||||||+|++++||.++|+||
T Consensus 4052 ~v~d~~~~~~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~--------~~~~~~yrTGDl~~~~~dG~l~~~GR 4123 (4334)
T PRK05691 4052 YLLDEALELVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFG--------APGERLYRTGDLARRRSDGVLEYVGR 4123 (4334)
T ss_pred EEECCCCCCCCCCCceEEEEecccccccccCCcccchhhcccCCCC--------CCCceeeccCcceeecCCCcEEEecc
Confidence 9998765 456789999999999999999999999999886542 23579999999999999999999999
Q ss_pred cCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCE
Q 002615 240 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 319 (900)
Q Consensus 240 ~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~ 319 (900)
+|+|||++|+||+|.|||++|.++|+|.+++|+.... ..+..+++|++............++|+++|+++||.||+|..
T Consensus 4124 ~d~qvki~G~riel~eIE~~l~~~~~v~~a~v~~~~~-~~~~~l~a~~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~ 4202 (4334)
T PRK05691 4124 IDHQVKIRGYRIELGEIEARLHEQAEVREAAVAVQEG-VNGKHLVGYLVPHQTVLAQGALLERIKQRLRAELPDYMVPLH 4202 (4334)
T ss_pred cCCcEEeceEEecHHHHHHHHHhCCCccEEEEEEecC-CCCcEEEEEEeCCcccccchHHHHHHHHHHHhhCChhhcCcc
Confidence 9999999999999999999999999999998876644 334578999987665444445567899999999999999999
Q ss_pred EEEcCCcCCCCCCCcchhhhccccccccccccCcccccchHHHHHHHHHHhcccCCcccccCCCccccCcchHHHHHHHH
Q 002615 320 FVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAH 399 (900)
Q Consensus 320 ~~~v~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~~l~~ 399 (900)
++.+++||+|+||||||++|+++...... ......+.+++|+.|+++|+++|+.+.|+.+|+||++|||||+||+|..
T Consensus 4203 ~~~~~~lP~t~~GKidr~~L~~~~~~~~~--~~~~~~p~~~~e~~l~~iw~~vL~~~~i~~~d~Ff~lGg~Sl~a~~l~~ 4280 (4334)
T PRK05691 4203 WLWLDRLPLNANGKLDRKALPALDIGQLQ--SQAYLAPRNELEQTLATIWADVLKVERVGVHDNFFELGGHSLLATQIAS 4280 (4334)
T ss_pred eeecccCCCCCCCcccHhhcCCCcccccc--ccccCCCCCHHHHHHHHHHHHHhCCCcCCCCCchhhcCCcHHHHHHHHH
Confidence 99999999999999999999876322211 1122456789999999999999999999999999999999999999976
Q ss_pred Hh------CCCchhhhcCCCHHHHHHHHHhh
Q 002615 400 NL------GIDMRLIYNFPTPSKLEIALLEK 424 (900)
Q Consensus 400 ~l------~~~~~~~~~~~t~~~l~~~l~~~ 424 (900)
++ .+++.++|++||++.||..|...
T Consensus 4281 ~~~~~~~~~~~~~~~f~~~t~~~la~~~~~~ 4311 (4334)
T PRK05691 4281 RVQKALQRNVPLRAMFECSTVEELAEYIEGL 4311 (4334)
T ss_pred HHHHHhCCCccHHHHhcCCCHHHHHHHHhhh
Confidence 54 47889999999999999999753
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=590.23 Aligned_cols=396 Identities=25% Similarity=0.389 Sum_probs=342.9
Q ss_pred CccCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 2 QDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 2 ~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
.+.++++++|++++++|++|+.++.++|.+|+.|+++++++ ....++..+++.|++++||++.++|++++.+++....
T Consensus 3270 ~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~l~i~~--~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~ 3347 (3956)
T PRK12467 3270 AEAYELDANDRVLLFMSFSFDGAQERFLWTLICGGCLVVRD--NDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAGG 3347 (3956)
T ss_pred HHhcCCCcCCEEEEecCccHhHHHHHHHHHHhCCCEEEECC--cccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcccc
Confidence 35688999999999999999999999999999999999985 3347899999999999999999999999988764321
Q ss_pred ccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcE
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161 (900)
Q Consensus 82 ~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 161 (900)
..+++||.+++|||++++++.+.|.+.+++++++|.||+||+++.++...+... ........++|+|+++++
T Consensus 3348 ----~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~----~~~~~~~~~iG~p~~~~~ 3419 (3956)
T PRK12467 3348 ----ADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGD----AVCEAPYAPIGRPVAGRS 3419 (3956)
T ss_pred ----cCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccc----cccCCCCCCCccccCCCE
Confidence 346889999999999999999999998988999999999999988776544211 111224578999999999
Q ss_pred EEEecCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEc
Q 002615 162 IVLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 238 (900)
Q Consensus 162 ~~i~d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 238 (900)
++|+|+++ +.++.|||+|+|+++++||+++|+.|+++|+..+.. ..+.+||+|||+|++++||+|+|+|
T Consensus 3420 ~~v~d~~~~~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~--------~~g~r~yrTGDl~~~~~dG~l~~~G 3491 (3956)
T PRK12467 3420 IYVLDGQLNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFS--------GSGGRLYRTGDLARYRADGVIEYLG 3491 (3956)
T ss_pred EEEECCCCCCCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCC--------CCCceeeccchhheecCCCcEEEec
Confidence 99998765 456789999999999999999999999999886542 2357899999999999999999999
Q ss_pred ccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCC
Q 002615 239 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 318 (900)
Q Consensus 239 R~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~ 318 (900)
|+|+|||++|+||+|.|||++|.++|+|.+|+|+..... .+..+++|+++..... ...++++++++++||.||+|.
T Consensus 3492 R~d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~~-~~~~lva~v~~~~~~~---~~~~~l~~~l~~~Lp~y~vP~ 3567 (3956)
T PRK12467 3492 RIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLARDGA-GGKQLVAYVVPADPQG---DWRETLRDHLAASLPDYMVPA 3567 (3956)
T ss_pred cccceEeeceEeecHHHHHHHHhhCcccceEEEEEecCC-CCcEEEEEEeCCCCCc---ccHHHHHHHHhccCChhhCCC
Confidence 999999999999999999999999999999999987543 4568999998765422 234689999999999999999
Q ss_pred EEEEcCCcCCCCCCCcchhhhccccccccccccCcccccchHHHHHHHHHHhcccCCcccccCCCccccCcchHHHHHHH
Q 002615 319 RFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVA 398 (900)
Q Consensus 319 ~~~~v~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~~l~ 398 (900)
.|+++++||+|++|||||++|++..... ......+.+++|+.++++|+++|+++.|+.++|||++|||||.|++|.
T Consensus 3568 ~~~~l~~lP~t~~GKidR~~L~~~~~~~----~~~~~~p~~~~e~~l~~i~~~vL~~~~i~~~d~Ff~lGgdSl~a~~l~ 3643 (3956)
T PRK12467 3568 QLLVLAAMPLGPNGKVDRKALPDPDAKG----SREYVAPRSEVEQQLAAIWADVLGVEQVGVTDNFFELGGDSLLALQVL 3643 (3956)
T ss_pred eeeeeccCCCCCCCccchhhcCCCCccc----cccccCCCCHHHHHHHHHHHHHhCCCCCCCCcchhcccchHHHHHHHH
Confidence 9999999999999999999999865432 122335678899999999999999999999999999999999999998
Q ss_pred HHh------CCCchhhhcCCCHHHHHHHHHh
Q 002615 399 HNL------GIDMRLIYNFPTPSKLEIALLE 423 (900)
Q Consensus 399 ~~l------~~~~~~~~~~~t~~~l~~~l~~ 423 (900)
.++ .+++.++|++||++.||..+..
T Consensus 3644 ~~l~~~~g~~l~~~~lf~~pti~~la~~~~~ 3674 (3956)
T PRK12467 3644 SRIRQSLGLKLSLRDLMSAPTIAELAGYSPL 3674 (3956)
T ss_pred HHHHHHhCCCCCHHHHHhCCCHHHHHHHHhh
Confidence 754 4788999999999999998864
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-54 Score=585.70 Aligned_cols=403 Identities=28% Similarity=0.459 Sum_probs=344.4
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
+.++++++|++++++|++|+++++++|.+|+.|++++++++ ....+|..+++.|+++++|++.++|++++.+......
T Consensus 1752 ~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~lvi~~~-~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~- 1829 (3956)
T PRK12467 1752 EAYQLSAADVVLQFTSFAFDVSVWELFWPLINGARLVIAPP-GAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQ- 1829 (3956)
T ss_pred HhcCCCcccEEEEecCccHHHHHHHHHHHHhCCCEEEEcCh-hhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhccc-
Confidence 56889999999999999999999999999999999999853 3456899999999999999999999999998864221
Q ss_pred cCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEE
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 162 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 162 (900)
...+++||.+++|||++++++++.|.+.+++++++|.||+||++++++.+.+.... ......+++|+|++++.+
T Consensus 1830 --~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~----~~~~~~~~iG~p~~~~~~ 1903 (3956)
T PRK12467 1830 --VEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKD----LEGRDSVPIGQPIANLST 1903 (3956)
T ss_pred --cccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccc----cccCCCCCcccccCCCEE
Confidence 13368999999999999999999999988889999999999999887765543211 112245789999999999
Q ss_pred EEecCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcc
Q 002615 163 VLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 239 (900)
Q Consensus 163 ~i~d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 239 (900)
+|+|+++ +.+..|||+|+|+++++||+++|+.|+++|+..+.. ..+.+||+|||+|++++||.|+|+||
T Consensus 1904 ~vld~~~~~vp~G~~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~--------~~~~r~yrTGDl~~~~~dG~l~~~GR 1975 (3956)
T PRK12467 1904 YILDASLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFG--------TVGSRLYRTGDLARYRADGVIEYLGR 1975 (3956)
T ss_pred EEECCCCCCCCCCCceEEEeccccccccccCChhhhhhhCcCCCCC--------CCCccceeccceEEECCCCCEEEecc
Confidence 9998765 346779999999999999999999999999875532 12568999999999999999999999
Q ss_pred cCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCc-----hHHHHHHHHHHHHhhCCCC
Q 002615 240 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTS-----SEIFLSSIKSWVSSKLPLA 314 (900)
Q Consensus 240 ~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~-----~~~~~~~l~~~l~~~l~~~ 314 (900)
+|+|||++|+||+|.|||++|.+||+|.+|+|++.+. ..+..+++|+++...... .....++|++++++.||.|
T Consensus 1976 ~D~qVki~G~rIel~eIE~~l~~~p~V~~a~vv~~~~-~~~~~lva~vv~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~y 2054 (3956)
T PRK12467 1976 IDHQVKIRGFRIELGEIEARLREQGGVREAVVIAQDG-ANGKQLVAYVVPTDPGLVDDDEAQVALRAILKNHLKASLPEY 2054 (3956)
T ss_pred cCceEEeCeEEechHHHHHHHHhCCCcceEEEEEecC-CCCcEEEEEEEecCcccccccccccccHHHHHHHHHhhCchh
Confidence 9999999999999999999999999999999998863 345679999987654221 1123468999999999999
Q ss_pred ccCCEEEEcCCcCCCCCCCcchhhhccccccccccccCcccccchHHHHHHHHHHhcccCCcccccCCCccccCcchHHH
Q 002615 315 MIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAA 394 (900)
Q Consensus 315 ~~P~~~~~v~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a 394 (900)
|+|..|+.+++||+|+||||||++|++......... ...+.+++++.++++|+++|+++.|+.++|||++|||||+|
T Consensus 2055 mvP~~~~~l~~lP~t~~GKidr~~L~~~~~~~~~~~---~~~p~~~~e~~l~~iw~~vL~~~~i~~~d~Ff~lGGdSl~a 2131 (3956)
T PRK12467 2055 MVPAHLVFLARMPLTPNGKLDRKALPAPDASELQQA---YVAPQSELEQRLAAIWQDVLGLEQVGLHDNFFELGGDSIIS 2131 (3956)
T ss_pred hCchhhhhhhcCCCCCCCCcchhhCCCCcccccccc---ccCCCCHHHHHHHHHHHHHhCCCccCCCCChhhcCCchHHH
Confidence 999999999999999999999999987654433222 23466789999999999999999999999999999999999
Q ss_pred HHHHHHh-----CCCchhhhcCCCHHHHHHHHHhhc
Q 002615 395 AHVAHNL-----GIDMRLIYNFPTPSKLEIALLEKK 425 (900)
Q Consensus 395 ~~l~~~l-----~~~~~~~~~~~t~~~l~~~l~~~~ 425 (900)
|+|++++ .++++++|++||++.||..+....
T Consensus 2132 ~~l~~~~~~~g~~l~~~~if~~~ti~~la~~~~~~~ 2167 (3956)
T PRK12467 2132 IQVVSRARQAGIRFTPKDLFQHQTVQSLAAVAQEGD 2167 (3956)
T ss_pred HHHHHHHHHcCCCCCHHHHhcCCCHHHHHHHHhhcc
Confidence 9998765 478999999999999999886543
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-53 Score=545.62 Aligned_cols=417 Identities=22% Similarity=0.357 Sum_probs=338.7
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
+.++++++|++++.+|++|++++.++|.+|+.|+++++++ .....++..+++.|+++++|++.++|++++.+.....
T Consensus 449 ~~~~~~~~d~~~~~~~~~~d~~~~~i~~~L~~G~~l~~~~-~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~-- 525 (1389)
T TIGR03443 449 KRFGLSENDKFTMLSGIAHDPIQRDMFTPLFLGAQLLVPT-ADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQAT-- 525 (1389)
T ss_pred HhcCCCCCCEEEEecCceecchHHHHHHHHhCCCEEEEcC-hhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhccc--
Confidence 4678999999999999999999999999999999999985 3345678899999999999999999999998864321
Q ss_pred cCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCcccc--ccCCCCcceeeeccCCc
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSIL--EMSTLKSVPIGLPISNC 160 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~--~~~~~~~~~~G~p~~~~ 160 (900)
..+++||.+++|||++++.+.+.+.+.+++++++|.||+||++++++++......... .......+++|+|++++
T Consensus 526 ---~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 602 (1389)
T TIGR03443 526 ---TPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNV 602 (1389)
T ss_pred ---ccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCC
Confidence 2368999999999999999999999888899999999999999877765432111000 00011357899999999
Q ss_pred EEEEecCCC-----CCCCccEEEEccccccccccCCCCCCccchhccCCcccc---cC----------cCCCCCcceEec
Q 002615 161 DIVLVESDT-----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSIC---NC----------SVSCGSQTYFRT 222 (900)
Q Consensus 161 ~~~i~d~~~-----~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~---~~----------~~~~~~~~~~~T 222 (900)
+++|+|+++ +.+..|||+|+|+++++||+++|+.|+++|+..+..... .. ......++||+|
T Consensus 603 ~~~ivd~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~T 682 (1389)
T TIGR03443 603 QLLVVNRNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRT 682 (1389)
T ss_pred EEEEECCccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeec
Confidence 999998643 356789999999999999999999999999764321000 00 000123689999
Q ss_pred CceEEEccCCcEEEEcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCc-------
Q 002615 223 GDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTS------- 295 (900)
Q Consensus 223 GDl~~~~~~G~l~~~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~------- 295 (900)
||+|++++||.|+|+||+|||||++|+||+|.|||++|.+||.|.+++|+...+......+++|+++......
T Consensus 683 GDlg~~~~dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~ 762 (1389)
T TIGR03443 683 GDLGRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSE 762 (1389)
T ss_pred CCceeEcCCCCEEEecccCCEEEeCcEEecHHHHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEeccCccccccccccc
Confidence 9999999999999999999999999999999999999999999999999887776667789999987622110
Q ss_pred ----------------hHHHHHHHHHHHHhhCCCCccCCEEEEcCCcCCCCCCCcchhhhccccccccccc-----cCcc
Q 002615 296 ----------------SEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQ-----HDAD 354 (900)
Q Consensus 296 ----------------~~~~~~~l~~~l~~~l~~~~~P~~~~~v~~lP~t~~GKidr~~L~~~~~~~~~~~-----~~~~ 354 (900)
......+++++++++||.||+|..++++++||+|++|||||++|++.+....... ....
T Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~~P~~~~~~~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~ 842 (1389)
T TIGR03443 763 VDDEESSDPVVKGLIKYRKLIKDIREYLKKKLPSYAIPTVIVPLKKLPLNPNGKVDKPALPFPDTAQLAAVAKNRSASAA 842 (1389)
T ss_pred cccccccccchhhhhhhhhhHHHHHHHHHhhCCcccCCceEEEcccCCCCCCccccHhhcCCCchhhhhhhhcccccccc
Confidence 0113468999999999999999999999999999999999999986544332211 1112
Q ss_pred cccchHHHHHHHHHHhcccCC--cccccCCCccccCcchHHHHHHHHHh------CCCchhhhcCCCHHHHHHHHHhhc
Q 002615 355 ETKASDLLQVIRKAFGHALMV--EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 425 (900)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~--~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~~t~~~l~~~l~~~~ 425 (900)
..+.+++++.++++|+++|+. ..++.+++||++|||||+|++|+++| .+++..+|++||++.|+.+|....
T Consensus 843 ~~~~~~~~~~l~~~~~~vl~~~~~~i~~~~~ff~lGgdSL~a~~l~~~l~~~~~~~l~~~~i~~~~ti~~la~~l~~~~ 921 (1389)
T TIGR03443 843 DEEFTETEREIRDLWLELLPNRPATISPDDSFFDLGGHSILATRMIFELRKKLNVELPLGLIFKSPTIKGFAKEVDRLK 921 (1389)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCccccCcCcchhhcCccHHHHHHHHHHHHHHhCCCcCHHHHhcCCCHHHHHHHHHhhh
Confidence 234567899999999999986 45999999999999999999998766 378889999999999999997654
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-53 Score=539.35 Aligned_cols=403 Identities=26% Similarity=0.439 Sum_probs=338.1
Q ss_pred CccCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 2 QDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 2 ~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
.+.|+++++|++++.+|++|+.+++++|.+|+.|+++++.+ .....+|..+++.++++++|++.++|+++..++.....
T Consensus 631 ~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~-~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~ 709 (1296)
T PRK10252 631 QNHYPLTADDVVLQKTPCSFDVSVWEFFWPFIAGAKLVMAE-PEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTP 709 (1296)
T ss_pred HHhcCCCCCCEEEEeCCcchhhhHHHHHHHHhCCCEEEECC-hhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhcc
Confidence 35689999999999999999999999999999999999985 34467899999999999999999999999998876433
Q ss_pred ccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcE
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161 (900)
Q Consensus 82 ~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 161 (900)
......+++||.+++|||++++++.+.|.+.+ +++++|.||+||++..++........ ........+++|+|++++.
T Consensus 710 ~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~--~~~~~~~~~~iG~p~~~~~ 786 (1296)
T PRK10252 710 EGARQSCASLRQVFCSGEALPADLCREWQQLT-GAPLHNLYGPTEAAVDVSWYPAFGEE--LAAVRGSSVPIGYPVWNTG 786 (1296)
T ss_pred ccccccCCCccEEEEecCCCCHHHHHHHHhcC-CCEEEeCCCcchhhheeeeeeccccc--ccccCCCCCCcccccCCCE
Confidence 32222357899999999999999999998876 78999999999999877755432211 0001224678999999999
Q ss_pred EEEecCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEc
Q 002615 162 IVLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 238 (900)
Q Consensus 162 ~~i~d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 238 (900)
++|+|+++ +.+..|||+|+|+++++||+++|+.|.++|...+.. .+.+||+|||+|++++||.++|+|
T Consensus 787 ~~i~d~~~~~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~---------~~~~~y~TGDl~~~~~~G~l~~~G 857 (1296)
T PRK10252 787 LRILDARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFA---------PGERMYRTGDVARWLDDGAVEYLG 857 (1296)
T ss_pred EEEECCCCCCCCCCCceEEEecccccchhhCCCcccchhhcccCCCC---------CCCEEEecCceEEEcCCCcEEEec
Confidence 99998765 456779999999999999999999999999875432 246899999999999999999999
Q ss_pred ccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEee------cCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCC
Q 002615 239 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHK------HQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLP 312 (900)
Q Consensus 239 R~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~------~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~ 312 (900)
|+|++||++|+||+|.|||++|.+||.|.+++|+... ..+....+++++++...... ..++|+++++++||
T Consensus 858 R~d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~~~---~~~~l~~~l~~~Lp 934 (1296)
T PRK10252 858 RSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLPL---DTSALQAQLRERLP 934 (1296)
T ss_pred ccCCeEEEeeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcCCCCCC---CHHHHHHHHHhhCc
Confidence 9999999999999999999999999999999876542 11222468999987654322 24689999999999
Q ss_pred CCccCCEEEEcCCcCCCCCCCcchhhhccccccccccccCcccccchHHHHHHHHHHhcccCCcccccCCCccccCcchH
Q 002615 313 LAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSI 392 (900)
Q Consensus 313 ~~~~P~~~~~v~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~Ff~lGgdSl 392 (900)
.||+|..++.+++||+|++|||||++|++..... ......+.+.+++.+.++|+++|+.+.++.+++||++|||||
T Consensus 935 ~~~~P~~~~~~~~lP~t~~GKidr~~L~~~~~~~----~~~~~~~~~~~e~~l~~~~~~~l~~~~~~~~~~ff~lGg~Sl 1010 (1296)
T PRK10252 935 PHMVPVVLLQLDQLPLSANGKLDRKALPLPELKA----QVPGRAPKTGTETIIAAAFSSLLGCDVVDADADFFALGGHSL 1010 (1296)
T ss_pred hhcCCcEEEEecCCCCCCCcChhHHhcCCCcccc----cccCCCCCCHHHHHHHHHHHHHhCCCCCCCCcCHHHcCCChH
Confidence 9999999999999999999999999998643211 112234567889999999999999999999999999999999
Q ss_pred HHHHHHHHh------CCCchhhhcCCCHHHHHHHHHhh
Q 002615 393 AAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 424 (900)
Q Consensus 393 ~a~~l~~~l------~~~~~~~~~~~t~~~l~~~l~~~ 424 (900)
+|++|..+| .+++.++|++||++.|+.+|...
T Consensus 1011 ~a~~l~~~l~~~~~~~l~~~~~~~~pti~~la~~l~~~ 1048 (1296)
T PRK10252 1011 LAMKLAAQLSRQFARQVTPGQVMVASTVAKLATLLDAE 1048 (1296)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHhcCCCHHHHHHHHhcc
Confidence 999998765 47889999999999999999754
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-53 Score=583.98 Aligned_cols=392 Identities=28% Similarity=0.440 Sum_probs=340.5
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
+.|+++++|++++.+|++|+.++.++|.+|+.|++++++++ ....++..+++.+++++||++.++|++++.++....
T Consensus 689 ~~~~~~~~d~~l~~~p~~fd~~~~~~~~~L~~G~~l~i~~~-~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~-- 765 (5163)
T PRK12316 689 QAYGLGVGDTVLQKTPFSFDVSVWEFFWPLMSGARLVVAAP-GDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED-- 765 (5163)
T ss_pred HhcCCCCCCEEEeeCCeehHHHHHHHHHHHhCCCEEEECCc-cccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc--
Confidence 56889999999999999999999999999999999999853 345789999999999999999999999999875422
Q ss_pred cCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEE
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 162 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 162 (900)
...+++||.+++|||++++++.+.|.+.+++++++|.||+||+++.++...+.. .....+++|+|++++++
T Consensus 766 --~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~-------~~~~~~~iG~p~~~~~~ 836 (5163)
T PRK12316 766 --VASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVE-------EGGDSVPIGRPIANLAC 836 (5163)
T ss_pred --cccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEeccc-------ccCCCCCCccccCCCEE
Confidence 123689999999999999999999988888999999999999997766554321 12256789999999999
Q ss_pred EEecCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcc
Q 002615 163 VLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 239 (900)
Q Consensus 163 ~i~d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 239 (900)
+|+|+++ +.+..|||+|+|+++++||+++|+.|+++|+..+.. .+++||+|||+|++++||.|+|+||
T Consensus 837 ~i~d~~~~~~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~---------~~~~~y~TGDl~~~~~dG~l~~~GR 907 (5163)
T PRK12316 837 YILDANLEPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFV---------AGERMYRTGDLARYRADGVIEYAGR 907 (5163)
T ss_pred EEECCCCCCCCCCCceEEEecccccChhhCCChhhhhhhCCCCCCC---------CCCeeEecCccEEECCCCCEEeecc
Confidence 9998766 346789999999999999999999999999765421 2468999999999999999999999
Q ss_pred cCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCE
Q 002615 240 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 319 (900)
Q Consensus 240 ~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~ 319 (900)
+|||||++|+||+|.|||++|.+||.|.+|+|++.+ +..++|+|++.+.... ..++++++++++||.||+|..
T Consensus 908 ~d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~~~~----~~~lva~vv~~~~~~~---~~~~l~~~l~~~Lp~y~vP~~ 980 (5163)
T PRK12316 908 IDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVD----GKQLVGYVVLESEGGD---WREALKAHLAASLPEYMVPAQ 980 (5163)
T ss_pred cCCEEEEceEEcChHHHHHHHHhCCCcceEEEEEcC----CCeEEEEEEccCCCCC---CHHHHHHHHHhhCCCccCCCe
Confidence 999999999999999999999999999999999886 3478999998764322 246899999999999999999
Q ss_pred EEEcCCcCCCCCCCcchhhhccccccccccccCcccccchHHHHHHHHHHhcccCCcccccCCCccccCcchHHHHHHHH
Q 002615 320 FVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAH 399 (900)
Q Consensus 320 ~~~v~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~~l~~ 399 (900)
|+++++||+|++|||||++|++....... .....+.+++++.++.+|+++|+.+.++.++|||++|||||+||+|++
T Consensus 981 i~~v~~lP~t~~GKidr~~L~~~~~~~~~---~~~~~~~~~~e~~l~~iw~~vL~~~~i~~~~~Ff~lGgdSl~a~~l~~ 1057 (5163)
T PRK12316 981 WLALERLPLTPNGKLDRKALPAPEASVAQ---QGYVAPRNALERTLAAIWQDVLGVERVGLDDNFFELGGDSIVSIQVVS 1057 (5163)
T ss_pred EEEHhhCCCCCCCChhHHhhcCccccccc---cccCCCCCHHHHHHHHHHHHHhCCCCCCCCCChhhcCCcHHHHHHHHH
Confidence 99999999999999999999876543222 222346678999999999999999999999999999999999999987
Q ss_pred Hh-----CCCchhhhcCCCHHHHHHHHHhhc
Q 002615 400 NL-----GIDMRLIYNFPTPSKLEIALLEKK 425 (900)
Q Consensus 400 ~l-----~~~~~~~~~~~t~~~l~~~l~~~~ 425 (900)
++ .++++++|++||++.||.++....
T Consensus 1058 ~~~~~g~~l~~~~~~~~~ti~~la~~~~~~~ 1088 (5163)
T PRK12316 1058 RARQAGIQLSPRDLFQHQTIRSLALVAKAGQ 1088 (5163)
T ss_pred HHHHhCCCCCHHHHhcCCCHHHHHHHHHhcc
Confidence 65 588999999999999999886543
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-53 Score=581.85 Aligned_cols=399 Identities=24% Similarity=0.423 Sum_probs=341.9
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
+.++++++|++++++|++|+.++.++|.+|+.|+++++++. ...++..+++.++++++|++.++|++++.+.+.....
T Consensus 2180 ~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~~~~~~~--~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~ 2257 (5163)
T PRK12316 2180 ERYELSPADCELQFMSFSFDGAHEQWFHPLLNGARVLIRDD--ELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERD 2257 (5163)
T ss_pred HhcCCCCcceEEEecCchHHHHHHHHHHHHhCCCEEEeCCc--ccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhcc
Confidence 46889999999999999999999999999999999987742 2468999999999999999999999999998754332
Q ss_pred cCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEE
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 162 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 162 (900)
. ...+||.+++|||++++++++.|.+.+++.+++|.||+||+++.++...+.... ......+++|+|++++++
T Consensus 2258 ~---~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~----~~~~~~~~iG~p~~~~~~ 2330 (5163)
T PRK12316 2258 G---RPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQD----PCGAAYVPIGRALGNRRA 2330 (5163)
T ss_pred c---CCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhheeeeeeeeccccc----ccCCCcCCcccccCCCEE
Confidence 2 235899999999999999999999988889999999999999877755432211 111134789999999999
Q ss_pred EEecCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcc
Q 002615 163 VLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 239 (900)
Q Consensus 163 ~i~d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 239 (900)
+|+|+++ +.+..|||+|+|+++++||+++|+.|+++|+..+.. ..+++||+|||+|++++||.++|+||
T Consensus 2331 ~i~d~~~~~vp~g~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~--------~~~~~~yrTGDl~~~~~dG~l~~~GR 2402 (5163)
T PRK12316 2331 YILDADLNLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFS--------ASGERLYRTGDLARYRADGVVEYLGR 2402 (5163)
T ss_pred EEECCCCCCCCCCCeeEEEecchhhcccccCChhhhhhhccCCCCC--------CCCCeeEecccEEEEcCCCcEEEecC
Confidence 9998765 456789999999999999999999999999875432 12468999999999999999999999
Q ss_pred cCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCE
Q 002615 240 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 319 (900)
Q Consensus 240 ~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~ 319 (900)
+|+|||++|+||+|.|||++|.+||+|.+++|++.++. .++.++||+++..... ...++|+++++++||.||+|..
T Consensus 2403 ~d~~iki~G~rie~~eIE~~l~~~~~v~~a~v~~~~~~-~~~~l~a~v~~~~~~~---~~~~~l~~~l~~~Lp~~~vP~~ 2478 (5163)
T PRK12316 2403 IDHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQDGA-SGKQLVAYVVPDDAAE---DLLAELRAWLAARLPAYMVPAH 2478 (5163)
T ss_pred CCCeEEEcCccCChHHHHHHHhhCcccceEEEEEEecC-CCeEEEEEEEecCCCc---cCHHHHHHHHHhhCchhcCcce
Confidence 99999999999999999999999999999999987765 5568999999876542 2346899999999999999999
Q ss_pred EEEcCCcCCCCCCCcchhhhccccccccccccCcccccchHHHHHHHHHHhcccCCcccccCCCccccCcchHHHHHHHH
Q 002615 320 FVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAH 399 (900)
Q Consensus 320 ~~~v~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~~l~~ 399 (900)
++++++||+|++|||||++|++....... .....+.+++++.++++|+++|+.+.|+.+++||++|||||.||+|+.
T Consensus 2479 ~~~l~~lP~t~~GKidR~~L~~~~~~~~~---~~~~~p~~~~e~~l~~iw~~vL~~~~i~~~d~Ff~lGgdSl~a~~l~~ 2555 (5163)
T PRK12316 2479 WVVLERLPLNPNGKLDRKALPKPDVSQLR---QAYVAPQEGLEQRLAAIWQAVLKVEQVGLDDHFFELGGHSLLATQVVS 2555 (5163)
T ss_pred EeeecccCCCCCCccCHhhcCCCcccccc---ccccCCCCHHHHHHHHHHHHHhCCCccCCCCchhhhcchHHHHHHHHH
Confidence 99999999999999999999876543221 122346678899999999999999999999999999999999999986
Q ss_pred Hh------CCCchhhhcCCCHHHHHHHHHhhc
Q 002615 400 NL------GIDMRLIYNFPTPSKLEIALLEKK 425 (900)
Q Consensus 400 ~l------~~~~~~~~~~~t~~~l~~~l~~~~ 425 (900)
++ .+++.++|++||++.||..+....
T Consensus 2556 ~~~~~~g~~l~~~~~f~~~ti~~la~~l~~~~ 2587 (5163)
T PRK12316 2556 RVRQDLGLEVPLRILFERPTLAAFAASLESGQ 2587 (5163)
T ss_pred HHHHHhCCCcCHHHHhhCccHHHHhhhhhhhh
Confidence 54 578899999999999999886543
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=575.98 Aligned_cols=394 Identities=25% Similarity=0.424 Sum_probs=339.5
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
+.++++++|++++.+|++|+.++.++|.+|+.|++++++++ ....++..+++.++++++|++.++|++++.+......
T Consensus 1307 ~~~~~~~~d~~l~~~~~~fd~s~~~~~~~L~~G~~l~i~~~-~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~- 1384 (4334)
T PRK05691 1307 ATYALDDSDVLMQKAPISFDVSVWECFWPLITGCRLVLAGP-GEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLA- 1384 (4334)
T ss_pred HhcCCCCCCEEEEeCCccHHHHHHHHHHHHhCCCEEEEcCc-cccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCccc-
Confidence 46889999999999999999999999999999999999853 3357899999999999999999999999998754321
Q ss_pred cCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEE
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 162 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 162 (900)
..+++||.+++|||++++++.+.|.+.+|+++++|.||+||+++.++...+... .....++|+|++++.+
T Consensus 1385 ---~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~-------~~~~~~iG~p~~~~~~ 1454 (4334)
T PRK05691 1385 ---AACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAE-------DGERSPIGRPLGNVLC 1454 (4334)
T ss_pred ---ccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccc-------cCCCCcccceeCCCEE
Confidence 236899999999999999999999999999999999999999987775543211 1245689999999999
Q ss_pred EEecCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcc
Q 002615 163 VLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 239 (900)
Q Consensus 163 ~i~d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 239 (900)
+|+|+++ +.+..|||+|+|+++++||+++|+.|+++|+..+.. ..+.+||+|||+|++++||.++|+||
T Consensus 1455 ~i~d~~~~~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~--------~~~~r~yrTGDl~~~~~dG~l~~~GR 1526 (4334)
T PRK05691 1455 RVLDAELNLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLG--------EDGARLYRTGDRARWNADGALEYLGR 1526 (4334)
T ss_pred EEECCCCCCCCCCCceEEEecCcccchhhcCCccccHhhCCCCCCC--------CCCceEEEccceEEECCCCCEEEecc
Confidence 9998765 456779999999999999999999999999875432 12468999999999999999999999
Q ss_pred cCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCE
Q 002615 240 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 319 (900)
Q Consensus 240 ~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~ 319 (900)
+|+|||++|+||+|.|||++|.+||+|.+|+|+....... ..++++++........ .++|+++++++||.||+|..
T Consensus 1527 ~d~qiki~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~~~-~~lva~~~~~~~~~~~---~~~l~~~l~~~Lp~y~vP~~ 1602 (4334)
T PRK05691 1527 LDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVREGAAG-AQLVGYYTGEAGQEAE---AERLKAALAAELPEYMVPAQ 1602 (4334)
T ss_pred cCcEEEECCEEcCHHHHHHHHHhCCCcceEEEEEeeCCCC-CEEEEEEEeCCCCCCC---HHHHHHHHHHhCccccCCcE
Confidence 9999999999999999999999999999999987665433 5788998876543322 35899999999999999999
Q ss_pred EEEcCCcCCCCCCCcchhhhccccccccccccCcccccchHHHHHHHHHHhcccCCcccccCCCccccCcchHHHHHHHH
Q 002615 320 FVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAH 399 (900)
Q Consensus 320 ~~~v~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~~l~~ 399 (900)
|+.+++||+|++|||||++|++..... .....+.+++++.++++|+++|+.+.|+.++|||++|||||+||+|+.
T Consensus 1603 ~~~~~~lP~t~~GKidr~~L~~~~~~~-----~~~~~p~~~~e~~l~~iw~~vL~~~~i~~~d~Ff~lGGdSl~a~~l~~ 1677 (4334)
T PRK05691 1603 LIRLDQMPLGPSGKLDRRALPEPVWQQ-----REHVEPRTELQQQIAAIWREVLGLPRVGLRDDFFALGGHSLLATQIVS 1677 (4334)
T ss_pred EEEccccCCCCCCCcChhhcCcccccc-----cccCCCCCHHHHHHHHHHHHHhCCCCCCCCCchHHhcccHHHHHHHHH
Confidence 999999999999999999998653211 122346678999999999999999999999999999999999999976
Q ss_pred Hh------CCCchhhhcCCCHHHHHHHHHhhc
Q 002615 400 NL------GIDMRLIYNFPTPSKLEIALLEKK 425 (900)
Q Consensus 400 ~l------~~~~~~~~~~~t~~~l~~~l~~~~ 425 (900)
++ .+++.++|++||++.||.++....
T Consensus 1678 ~~~~~~~~~l~~~~~f~~~tl~~la~~i~~~~ 1709 (4334)
T PRK05691 1678 RTRQACDVELPLRALFEASELGAFAEQVARIQ 1709 (4334)
T ss_pred HHHHHhCCCcchhhhhcCCcHHHHHHHhhhhh
Confidence 54 478899999999999999997643
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=490.84 Aligned_cols=388 Identities=20% Similarity=0.239 Sum_probs=321.3
Q ss_pred cCCCCCCcEEEEccCcchHhHH-HHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 4 LYPLHGEELLLFKTSISFIDHL-QEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 4 ~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
.++++++|++++.+|++|+.++ ..++.+|..|+++++.+. ..++..+...++++++|+++++|+++..++.....
T Consensus 181 ~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~- 256 (705)
T PRK06060 181 ALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSA---PVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP- 256 (705)
T ss_pred hhCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeCC---CCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc-
Confidence 4778999999999999999887 458899999999999852 35778888999999999999999999998865322
Q ss_pred cCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEE
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 162 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 162 (900)
..+++||.+++|||++++++.+.+.+.+++++++|.||+||++.++..... ......++|+|++++++
T Consensus 257 ---~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~---------~~~~~~~iG~p~~~~~v 324 (705)
T PRK06060 257 ---DSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRV---------DEWRLGTLGRVLPPYEI 324 (705)
T ss_pred ---ccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccC---------CCCCcCcccccCCCcEE
Confidence 236789999999999999999999999988999999999999865432211 11245679999999999
Q ss_pred EEecCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcc
Q 002615 163 VLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 239 (900)
Q Consensus 163 ~i~d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 239 (900)
+++|+++ +.++.|||+|+|++++.||+++|+.+.. .++||+|||+|++++||+++|+||
T Consensus 325 ~i~d~~g~~~~~g~~GEl~i~g~~v~~GY~~~~~~~~~------------------~~~~~~TGDl~~~~~dG~l~~~GR 386 (705)
T PRK06060 325 RVVAPDGTTAGPGVEGDLWVRGPAIAKGYWNRPDSPVA------------------NEGWLDTRDRVCIDSDGWVTYRCR 386 (705)
T ss_pred EEECCCCCCCCCCCceEEEEccchhhhhhhCCCccccc------------------CCCcEECCeeEEECCCceEEEecc
Confidence 9998766 3466799999999999999999875321 368999999999999999999999
Q ss_pred cCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCE
Q 002615 240 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 319 (900)
Q Consensus 240 ~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~ 319 (900)
+||+||++|+||+|.|||++|.+||.|.+++|++.++...+..+++|+++............+++++++++||.||+|..
T Consensus 387 ~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~i~~~l~~~L~~~~~P~~ 466 (705)
T PRK06060 387 ADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGATIDGSVMRDLHRGLLNRLSAFKVPHR 466 (705)
T ss_pred cCceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccCcChHHHHHHHHHHHHhCCCCcCCcE
Confidence 99999999999999999999999999999999998887777788999987655433334456899999999999999999
Q ss_pred EEEcCCcCCCCCCCcchhhhcccccccc------cc-c----------cC--c----c---------------cccchHH
Q 002615 320 FVFMDSLPMTSSGKVDYASLSASTSFTI------SA-Q----------HD--A----D---------------ETKASDL 361 (900)
Q Consensus 320 ~~~v~~lP~t~~GKidr~~L~~~~~~~~------~~-~----------~~--~----~---------------~~~~~~~ 361 (900)
|+++++||+|++|||||++|++.+.... .. . .. . . ......+
T Consensus 467 i~~v~~iP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 546 (705)
T PRK06060 467 FAVVDRLPRTPNGKLVRGALRKQSPTKPIWELSLTEPGSGVRAQRDDLSASNMTIAGGNDGGATLRERLVALRQERQRLV 546 (705)
T ss_pred EEEeecCCCCcchhhHHHHHHhhccchhhhhhhccCcccCchhhhccccCCCcccCCCCCccHHHHHHHhhCcHHHHHHH
Confidence 9999999999999999999987543110 00 0 00 0 0 0011124
Q ss_pred HHHHHHHHhcccCCc---ccccCCCccccCcchHHHHHHHHHh------CCCchhhhcCCCHHHHHHHHHhhc
Q 002615 362 LQVIRKAFGHALMVE---EVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 425 (900)
Q Consensus 362 ~~~~~~~~~~~l~~~---~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~~t~~~l~~~l~~~~ 425 (900)
.+.++..|+++|+.. .++.+++||++|||||+|++|+++| .+++..+|++||+..|+.+|....
T Consensus 547 ~~~v~~~~a~vl~~~~~~~i~~~~~f~~lG~dSl~av~l~~~l~~~~g~~l~~~~~~~~pt~~~la~~l~~~~ 619 (705)
T PRK06060 547 VDAVCAEAAKMLGEPDPWSVDQDLAFSELGFDSQMTVTLCKRLAAVTGLRLPETVGWDYGSISGLAQYLEAEL 619 (705)
T ss_pred HHHHHHHHHHHhCCCChhhCCCCCChhhcCchHHHHHHHHHHHHHHhCCCCCceeeecCCCHHHHHHHHHHHh
Confidence 457888899999874 4999999999999999999998876 478889999999999999998764
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-49 Score=364.00 Aligned_cols=352 Identities=39% Similarity=0.670 Sum_probs=301.8
Q ss_pred cccccccccccccceEEeeCCceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEE
Q 002615 536 LWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLD 615 (900)
Q Consensus 536 ~W~~~~~~~v~~sp~v~~~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d 615 (900)
+|++++++|||++|+|+..|...+|++|||++.+.++|+++|+..|+..++.|+++++++..| ++++||++|.||+++
T Consensus 2 rW~vd~~kCVDaspLVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgd--fVV~GCy~g~lYfl~ 79 (354)
T KOG4649|consen 2 RWAVDLRKCVDASPLVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGD--FVVLGCYSGGLYFLC 79 (354)
T ss_pred ceeccchhhccCCcEEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECC--EEEEEEccCcEEEEE
Confidence 699999999999999999999999999999999999999999999999999999999999655 799999999999999
Q ss_pred CCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcE
Q 002615 616 YLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRL 695 (900)
Q Consensus 616 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l 695 (900)
.+||++.|.+...+.+++.+.++.+++.||+|++|+++|++|+++..++|+.+++|.++++|+++..++.||+++..|.+
T Consensus 80 ~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 80 VKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred ecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred EEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEECCCCCEEeeecCCCceeccccccccCCCeEEEE
Q 002615 696 TAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLIC 775 (900)
Q Consensus 696 ~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g 775 (900)
.+.+.++.+...+|......|+|.++... +..+.+++.||.+.+++..|+++|++.+.++++..||...-..+.|.++
T Consensus 160 lavt~~~~~~~~~w~~~~~~PiF~splcv--~~sv~i~~VdG~l~~f~~sG~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~ 237 (354)
T KOG4649|consen 160 LAVTKNPYSSTEFWAATRFGPIFASPLCV--GSSVIITTVDGVLTSFDESGRQVWRPATKGPIFMEPCESRPSCQQISLE 237 (354)
T ss_pred EEEccCCCCcceehhhhcCCccccCceec--cceEEEEEeccEEEEEcCCCcEEEeecCCCceecccccCCCcceEEEEe
Confidence 99999985568999999999999887664 4478889999999999988999999999999999998765444678887
Q ss_pred eeCCeEEEEeCCCCceeeEEecCCceecccccccccccccccccCC-CeEEEEEcCCCcEEEEEeecCcccccccccccc
Q 002615 776 SRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSI-DRLVCICTSSGSIHILRVNLDVTGKENQSKDHM 854 (900)
Q Consensus 776 ~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~ 854 (900)
..+.. +..-+..|.++|..+.+ .+...+.+.++.+...++..+ +.++..++.||+++++..+.. -.........
T Consensus 238 ~~~Cf-~~~~p~~ghL~w~~~~g--~t~~vy~~p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~s--l~~~~s~~g~ 312 (354)
T KOG4649|consen 238 NENCF-CAPLPIAGHLLWATQSG--TTLHVYLSPKLRFDLHSPGISYPKLLRRSSGDGKVMILMTSKS--LAEISSNGGE 312 (354)
T ss_pred cCCeE-EEeccccceEEEEecCC--cEEEEEeCcccceeccCCCCcchhhhhhhcCCCcEEEEEeccc--ccccccCCCc
Confidence 76664 44445669999998775 333444444444444444444 778888999999999954422 1111122222
Q ss_pred eeeeeeeccCCccccCceeeCCEEEEeeeCCeEEEEEccccc
Q 002615 855 VQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALETQH 896 (900)
Q Consensus 855 ~~~~~~~~l~~~~~ss~~~~~~~l~vg~~dg~l~~ld~~tg~ 896 (900)
.+.+...++++++|++|++.+++|++||+|+++||||+.+++
T Consensus 313 lq~~~~~el~~eIFsSPvii~grl~igcRDdYv~cldl~~~~ 354 (354)
T KOG4649|consen 313 LQNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLDLDTWH 354 (354)
T ss_pred cceEEEeecCcccccCCeEEccEEEEEEccCeEEEEeccccC
Confidence 466677799999999999999999999999999999998763
|
|
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-50 Score=437.26 Aligned_cols=309 Identities=25% Similarity=0.362 Sum_probs=273.7
Q ss_pred CCCCCCcEEEEccCcchHhHHHHHHHHHHhCC-eEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhcc
Q 002615 5 YPLHGEELLLFKTSISFIDHLQEFLSAILTAC-TLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQH 83 (900)
Q Consensus 5 ~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~-~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~ 83 (900)
..++..|+.++.+|++|..|+..++.+++.|+ +++..+ .+++..+++.+++|+||++.++|.++..|++.+ ..
T Consensus 220 ~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~----~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p--~~ 293 (537)
T KOG1176|consen 220 WELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLR----KFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSP--IV 293 (537)
T ss_pred ccCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECC----CCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCC--cc
Confidence 45667899999999999999999877555555 555543 679999999999999999999999999999875 22
Q ss_pred CCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEEE
Q 002615 84 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 163 (900)
Q Consensus 84 ~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 163 (900)
...+++++|.+.+||+++++++.+++.+.+|...+.+.||+||+++.++...... +..+.++|+++++.++.
T Consensus 294 ~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~--------e~k~~svG~~~~g~~~~ 365 (537)
T KOG1176|consen 294 KKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGP--------ERKPGSVGRLLPGVRVK 365 (537)
T ss_pred CcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCc--------cCcccccCccccceEEE
Confidence 3356899999999999999999999999998899999999999997776543221 13677899999999999
Q ss_pred EecCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEccc
Q 002615 164 LVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 240 (900)
Q Consensus 164 i~d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 240 (900)
+.++.+ ++++.||||++|+.++.||++||+.|++.|.. ++||+|||+|++|+||+|+|++|+
T Consensus 366 v~~e~g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~---------------~GW~~TGDiGy~D~DG~l~IvdR~ 430 (537)
T KOG1176|consen 366 VLDETGVSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDD---------------DGWFHTGDLGYFDEDGYLYIVDRS 430 (537)
T ss_pred eeCCCCCCCCCCCceEEEEECcccchhhcCChHHHHhhccc---------------CCccccCceEEEcCCCeEEEecch
Confidence 987666 46678999999999999999999999998843 499999999999999999999999
Q ss_pred CCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCEE
Q 002615 241 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 320 (900)
Q Consensus 241 dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~~ 320 (900)
+|+||.+|+.|+|.|||++|..||.|.||||++.+++..++.++|||+.+++.... .++|.++++++||+|++|..+
T Consensus 431 KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~lt---e~di~~~v~k~l~~y~~~~~V 507 (537)
T KOG1176|consen 431 KDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGSTLT---EKDIIEYVRKKLPAYKLPGGV 507 (537)
T ss_pred hhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCCcCC---HHHHHHHHHhhCChhhccCeE
Confidence 99999999999999999999999999999999999999999999999998855444 479999999999999999999
Q ss_pred EEcCCcCCCCCCCcchhhhcccccc
Q 002615 321 VFMDSLPMTSSGKVDYASLSASTSF 345 (900)
Q Consensus 321 ~~v~~lP~t~~GKidr~~L~~~~~~ 345 (900)
+++++||+|++|||.|+.|++.+..
T Consensus 508 ~Fvd~lPKs~~GKi~R~~lr~~~~~ 532 (537)
T KOG1176|consen 508 VFVDELPKTPNGKILRRKLRDIAKK 532 (537)
T ss_pred EEeccCCCCCcchHHHHHHHHHHHh
Confidence 9999999999999999999987653
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-47 Score=384.77 Aligned_cols=315 Identities=21% Similarity=0.269 Sum_probs=277.4
Q ss_pred ccCCCCCCcEEEEccCcchHhHH-HHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHL-QEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
.++++..++|+++..|++|.+|. ...+++|..|+|+|++.+ .++|...+++|+++++|.++.+|+++..+++....
T Consensus 268 ~r~g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~---~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~ 344 (596)
T KOG1177|consen 268 ARAGYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAP---SFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQK 344 (596)
T ss_pred HHhCcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCC---CCChHHHHHHHHhhceEEEecChHHHHHHhcchhh
Confidence 35788888999999999999994 668999999999999865 78999999999999999999999999999977665
Q ss_pred ccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcE
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161 (900)
Q Consensus 82 ~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 161 (900)
.. .++++||.++.||+++|+++++.+.....=..+...||+|||+...+.....+.+. ...-++|..+++.+
T Consensus 345 ~~--~~~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~------~~~ksVG~~m~h~E 416 (596)
T KOG1177|consen 345 QQ--VDLSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPE------ERIKSVGHLMDHYE 416 (596)
T ss_pred cc--CchhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHH------HHHhhhhhcccccc
Confidence 43 45899999999999999999999988664345788999999998777554333221 13457899999999
Q ss_pred EEEecCCCC---CCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEc
Q 002615 162 IVLVESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 238 (900)
Q Consensus 162 ~~i~d~~~~---~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 238 (900)
..++|.++. .+..|||+++|.+.+.|||++++.|.+.. +.++||+|||.++++++|.+.++|
T Consensus 417 a~iv~~~g~~v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti---------------~~drW~~TGDi~~m~enG~i~iVG 481 (596)
T KOG1177|consen 417 AAIVDKDGSEVPLGTKGELLIRGYSTMLGYWGEEEKTKETI---------------GNDRWYDTGDIAVMDENGTIEIVG 481 (596)
T ss_pred cccccCCCCccccCCCceEEEEechhheeecCCcccchhhc---------------ccccceecCceEEEcCCCcEEEEE
Confidence 999987764 35569999999999999999999888765 348999999999999999999999
Q ss_pred ccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCC
Q 002615 239 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 318 (900)
Q Consensus 239 R~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~ 318 (900)
|.+|+|+.+|++|+|.|||+.|.+||.|.++.|+++++...++.++|++.+.+..... ...++|+.+++.++.++++|+
T Consensus 482 RskdmI~rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~~-~t~E~lKa~Ck~klaHFKiPk 560 (596)
T KOG1177|consen 482 RSKDMIIRGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAEGK-TTAETLKAMCKGKLAHFKIPK 560 (596)
T ss_pred cccCeEEeCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeecccccc-ccHHHHHHHHhcccccccCCc
Confidence 9999999999999999999999999999999999999999999999999988776543 456799999999999999999
Q ss_pred EEEEcCCcCCCCCCCcchhhhccccc
Q 002615 319 RFVFMDSLPMTSSGKVDYASLSASTS 344 (900)
Q Consensus 319 ~~~~v~~lP~t~~GKidr~~L~~~~~ 344 (900)
+|+++++||+|.+|||+|-+++++.+
T Consensus 561 y~vf~~~FPlT~tGKIqKFeir~~~k 586 (596)
T KOG1177|consen 561 YFVFVDEFPLTTTGKIQKFEIREMSK 586 (596)
T ss_pred EEEEeccCcccccccchhHHHHHHHH
Confidence 99999999999999999999987765
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-47 Score=411.93 Aligned_cols=310 Identities=25% Similarity=0.325 Sum_probs=273.3
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHH-HHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
..|.+.++|++++.+++.|..+.+. ++.+|.+|+++++.+..... +|..++++++++++|.+++.|+.+++|.+...
T Consensus 206 ~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~-~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~- 283 (528)
T COG0365 206 FHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFY-SPERLWEALEKYKVTIFGTSPTFLRRLMKLGL- 283 (528)
T ss_pred HhhCCCCCCEEEeCCCchhhhCchHHHHHHHhcCCeEEEeCCCCCC-CHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC-
Confidence 3577889999999999999999977 89999999999998654333 69999999999999999999999999998754
Q ss_pred ccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcE
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161 (900)
Q Consensus 82 ~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 161 (900)
....++++||.+.+.||||+++.++++.+.+ ++.|.+.||+||++........ .....+.|+|+||++
T Consensus 284 -~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~-g~~i~d~~gqTEtg~~~~~~~~----------~~~~g~~g~p~pG~~ 351 (528)
T COG0365 284 -GEPYDLSSLRVLGSAGEPLNPEAFEWFYSAL-GVWILDIYGQTETGMGFIAGRP----------PVKNGSSGLPLPGYA 351 (528)
T ss_pred -cccccchhheeeeccCCCCCHHHHHHHHHHh-CCCEeccccccccCccccCCCC----------CcCCCCCCCCCCCce
Confidence 3446789999999999999999999999998 7999999999999943332211 112334499999999
Q ss_pred EEEecCCCC---CCCccEEEEccc--cccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEE
Q 002615 162 IVLVESDTV---KPDEGEIYAGGL--CLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVF 236 (900)
Q Consensus 162 ~~i~d~~~~---~~~~GEl~v~g~--~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~ 236 (900)
+.++|+++. +++ |+|+++.+ +++++||++|+...+.|.. +||.|||.+++|+||+++|
T Consensus 352 ~~vvdd~g~~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~----------------~~y~tGD~~~~DedGy~~i 414 (528)
T COG0365 352 VRRVDDEGNPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFG----------------RWYRTGDWAERDEDGYFWL 414 (528)
T ss_pred eEEECCCCCcCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhh----------------ceeecCceeEEccCCCEEE
Confidence 999998763 234 99999987 8999999999777776632 3999999999999999999
Q ss_pred EcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCcc
Q 002615 237 LGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMI 316 (900)
Q Consensus 237 ~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 316 (900)
+||.||+||+.|+||.+.|||++|.+||.|.||+|++.+++..++.++|||+++++...+ .+.++|++++++.+.+++.
T Consensus 415 ~GR~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~~~-~L~~ei~~~vr~~~~~~~~ 493 (528)
T COG0365 415 HGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPN-ELAEEIRRHVARNIGPHAI 493 (528)
T ss_pred EeeccceEeccCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCChH-HHHHHHHHHHHhccCcccC
Confidence 999999999999999999999999999999999999999999999999999999988777 8889999999888877999
Q ss_pred CCEEEEcCCcCCCCCCCcchhhhccccc
Q 002615 317 PNRFVFMDSLPMTSSGKVDYASLSASTS 344 (900)
Q Consensus 317 P~~~~~v~~lP~t~~GKidr~~L~~~~~ 344 (900)
|+.|+++++||+|.||||.|+.|++...
T Consensus 494 p~~i~fv~~LPkT~sGKI~R~~lr~~~~ 521 (528)
T COG0365 494 PRKIRFVDELPKTASGKIQRRLLRKILH 521 (528)
T ss_pred CceEEEecCCCCCCcccHHHHHHHHHHh
Confidence 9999999999999999999999998765
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=423.17 Aligned_cols=323 Identities=20% Similarity=0.227 Sum_probs=274.6
Q ss_pred ccCCCCCCcEEEEccCcchHhHHH-HHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQ-EFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
..++++++|++++.+|++|.++.. .++.+|+.|++++++++.....++..++++|+++++|++.++|++++.|.+....
T Consensus 310 ~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~ 389 (666)
T PLN02654 310 YAFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDE 389 (666)
T ss_pred HhcCCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCcc
Confidence 357899999999999999999864 4889999999999986443346899999999999999999999999999876432
Q ss_pred ccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCC--ceEEeecCccccccccceecccCCccccccCCCCcceeeeccCC
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPN--ISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISN 159 (900)
Q Consensus 82 ~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~--~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~ 159 (900)
.....++++||.++++||++++++++++.+.++. +.+.+.||+||+++..+...... ....+.++|+|++|
T Consensus 390 ~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~-------~~~~~gs~G~p~~g 462 (666)
T PLN02654 390 YVTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA-------WPQKPGSATFPFFG 462 (666)
T ss_pred ccccCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeeeccCCCC-------CCCCCCccCCCCCC
Confidence 2223457899999999999999999999988843 68999999999986554221110 01245679999999
Q ss_pred cEEEEecCCCC---CCCccEEEEcc--ccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcE
Q 002615 160 CDIVLVESDTV---KPDEGEIYAGG--LCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDL 234 (900)
Q Consensus 160 ~~~~i~d~~~~---~~~~GEl~v~g--~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l 234 (900)
++++|+|+++. .+..|||++++ |++++||+++++.+.+.|.. ..++||+|||++++|+||.+
T Consensus 463 ~~v~i~d~~g~~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~-------------~~~g~~~TGD~~~~d~dG~l 529 (666)
T PLN02654 463 VQPVIVDEKGKEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFK-------------PFAGYYFSGDGCSRDKDGYY 529 (666)
T ss_pred ceEEEECCCCCCCCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhh-------------cCCCEEEeCceEEECCCCcE
Confidence 99999987763 23469999998 78999999999877665532 12579999999999999999
Q ss_pred EEEcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCC
Q 002615 235 VFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLA 314 (900)
Q Consensus 235 ~~~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~ 314 (900)
+|+||+||+||++|+||+|.|||++|.+||.|.+++|++.+++..++.+++||+++++....+.+.++|+++++++|+.+
T Consensus 530 ~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~~~~~l~~~l~~~~~~~L~~~ 609 (666)
T PLN02654 530 WLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPYSEELRKSLILTVRNQIGAF 609 (666)
T ss_pred EEeeeccCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999988888999999998765555566678999999999999
Q ss_pred ccCCEEEEcCCcCCCCCCCcchhhhcccccc
Q 002615 315 MIPNRFVFMDSLPMTSSGKVDYASLSASTSF 345 (900)
Q Consensus 315 ~~P~~~~~v~~lP~t~~GKidr~~L~~~~~~ 345 (900)
++|+.|+++++||+|++|||+|++|++.+..
T Consensus 610 ~~P~~i~~v~~lP~T~sGKi~r~~l~~~~~~ 640 (666)
T PLN02654 610 AAPDKIHWAPGLPKTRSGKIMRRILRKIASR 640 (666)
T ss_pred cCCCEEEECCCCCCCCCcCchHHHHHHHHcC
Confidence 9999999999999999999999999987654
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=416.18 Aligned_cols=324 Identities=20% Similarity=0.251 Sum_probs=275.1
Q ss_pred ccCCCCCCcEEEEccCcchHhHH-HHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHL-QEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
..++++++|++++.+|++|..+. ..++.+|+.|+++++.+......++..+++.++++++|++.++|++++.|.+....
T Consensus 271 ~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~ 350 (625)
T TIGR02188 271 YVFDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDE 350 (625)
T ss_pred hccCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCc
Confidence 35788999999999999999876 45899999999999985433346899999999999999999999999999876433
Q ss_pred ccCCCCCCCcCEEEEeccCCChhhHHHHHhhCC--CceEEeecCccccccccceecccCCccccccCCCCcceeeeccCC
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFP--NISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISN 159 (900)
Q Consensus 82 ~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~ 159 (900)
.....++++||.+++|||++++++++.+.+.++ ++++++.||+||+++.++..... .....+.++|+|+++
T Consensus 351 ~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~-------~~~~~~~~~G~p~~g 423 (625)
T TIGR02188 351 WVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPG-------ATPTKPGSATLPFFG 423 (625)
T ss_pred ccccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCceeecCCC-------CCCcCCCcccCCcCC
Confidence 323345789999999999999999999998874 37899999999998765432111 011245679999999
Q ss_pred cEEEEecCCCC----CCCccEEEEcc--ccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCc
Q 002615 160 CDIVLVESDTV----KPDEGEIYAGG--LCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGD 233 (900)
Q Consensus 160 ~~~~i~d~~~~----~~~~GEl~v~g--~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~ 233 (900)
++++++|+++. +++.|||+|+| |++++||+++++.+.+.|.. ..++||+|||++++++||+
T Consensus 424 ~~~~i~d~~g~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~-------------~~~g~~~TGDl~~~d~dG~ 490 (625)
T TIGR02188 424 IEPAVVDEEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFS-------------PFPGYYFTGDGARRDKDGY 490 (625)
T ss_pred ceEEEECCCCCCCCCCCCeEEEEEccCCCcccccccCChHHHHHHHhc-------------cCCCEEECCceEEEcCCCc
Confidence 99999987663 45679999999 68999999998766665532 1257999999999999999
Q ss_pred EEEEcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCC
Q 002615 234 LVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPL 313 (900)
Q Consensus 234 l~~~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~ 313 (900)
++|+||+||+||++|+||+|.|||++|.+||.|.+++|++.+++..++.++++|++++.....+...++|+++++++|+.
T Consensus 491 l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~l~~ 570 (625)
T TIGR02188 491 IWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEPDDELRKELRKHVRKEIGP 570 (625)
T ss_pred EEEEecccCEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999888778899999999877655555678899999999999
Q ss_pred CccCCEEEEcCCcCCCCCCCcchhhhccccccc
Q 002615 314 AMIPNRFVFMDSLPMTSSGKVDYASLSASTSFT 346 (900)
Q Consensus 314 ~~~P~~~~~v~~lP~t~~GKidr~~L~~~~~~~ 346 (900)
+++|+.|+++++||+|++||++|+.|++++...
T Consensus 571 ~~~P~~i~~v~~lP~t~sGKi~r~~l~~~~~~~ 603 (625)
T TIGR02188 571 IAKPDKIRFVPGLPKTRSGKIMRRLLRKIAAGE 603 (625)
T ss_pred CccCcEEEECCCCCCCCCccchHHHHHHHHcCC
Confidence 999999999999999999999999999886643
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=412.64 Aligned_cols=323 Identities=20% Similarity=0.335 Sum_probs=270.6
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
..++++++|+++..+|++|+.++..++.++..|+++++.+ .+++..+++.|+++++|++.++|+++..++......
T Consensus 206 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~v~~~----~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~ 281 (563)
T PLN02860 206 AIVGYGEDDVYLHTAPLCHIGGLSSALAMLMVGACHVLLP----KFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKS 281 (563)
T ss_pred hhcCCCCCCEEEEecCchhhccHHHHHHHHHcCceEEecC----CCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhh
Confidence 3578899999999999999999988999999999999986 578999999999999999999999999998765433
Q ss_pred cCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCcc--------------ccccCCC
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPS--------------ILEMSTL 148 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~--------------~~~~~~~ 148 (900)
.....+++||.+++||+++++.+.+.+.+.|+++.+++.||+||+++.++......... .......
T Consensus 282 ~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (563)
T PLN02860 282 MTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQP 361 (563)
T ss_pred hccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccchhhhhhhccccccccccc
Confidence 22234689999999999999999999999998899999999999986555432211000 0000011
Q ss_pred CcceeeeccCCcEEEEecCCCCCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEE
Q 002615 149 KSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARR 228 (900)
Q Consensus 149 ~~~~~G~p~~~~~~~i~d~~~~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~ 228 (900)
...++|+|++++++++++++ +++.|||+++|++++.||+++|+.+.+.|. .++||+|||+|++
T Consensus 362 ~~~~vG~p~~~~~v~i~~~~--~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~---------------~~g~~~TGDl~~~ 424 (563)
T PLN02860 362 QGVCVGKPAPHVELKIGLDE--SSRVGRILTRGPHVMLGYWGQNSETASVLS---------------NDGWLDTGDIGWI 424 (563)
T ss_pred CCcccCCccCCcEEEEecCC--CCceeEEEEecCcccccccCCccccchhcc---------------CCCeEEccceEEE
Confidence 23478999999999999765 677899999999999999999999887663 3689999999999
Q ss_pred ccCCcEEEEcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCC-----------chH
Q 002615 229 IQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKT-----------SSE 297 (900)
Q Consensus 229 ~~~G~l~~~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~-----------~~~ 297 (900)
++||+++|+||+||+||++|++|+|.|||+++.+||.|.+++|++.++...++.++++++++++.. ...
T Consensus 425 d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~ 504 (563)
T PLN02860 425 DKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLT 504 (563)
T ss_pred cCCCCEEEeecccceeEECCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEECCccccccccchhhccccc
Confidence 999999999999999999999999999999999999999999999988877788999999875421 012
Q ss_pred HHHHHHHHHHHh-hCCCCccCCEEEEc-CCcCCCCCCCcchhhhccccccc
Q 002615 298 IFLSSIKSWVSS-KLPLAMIPNRFVFM-DSLPMTSSGKVDYASLSASTSFT 346 (900)
Q Consensus 298 ~~~~~l~~~l~~-~l~~~~~P~~~~~v-~~lP~t~~GKidr~~L~~~~~~~ 346 (900)
...++|++++++ .|+.|++|..++++ ++||+|++|||+|++|++++...
T Consensus 505 ~~~~~l~~~~~~~~L~~~~~P~~~~~~~~~lP~t~~GKi~r~~L~~~~~~~ 555 (563)
T PLN02860 505 LSSETLRHHCREKNLSRFKIPKLFVQWRKPFPLTTTGKIRRDEVRREVLSH 555 (563)
T ss_pred ccHHHHHHHHhhCcccccccceEEEEEecCCCCCcccchhHHHHHHHHHHH
Confidence 234678999987 59999999999775 67999999999999998766433
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=414.20 Aligned_cols=324 Identities=19% Similarity=0.254 Sum_probs=272.6
Q ss_pred ccCCCCCCcEEEEccCcchHhHH-HHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHL-QEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
..++++++|++++.+|++|..+. ..++.+|+.|+++++.+......++..+++.|+++++|++.++|++++.+++....
T Consensus 280 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~ 359 (637)
T PRK00174 280 YVFDYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDE 359 (637)
T ss_pred hccCCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCc
Confidence 35788999999999999999886 45899999999999975333345899999999999999999999999998875433
Q ss_pred ccCCCCCCCcCEEEEeccCCChhhHHHHHhhCC--CceEEeecCccccccccceecccCCccccccCCCCcceeeeccCC
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFP--NISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISN 159 (900)
Q Consensus 82 ~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~ 159 (900)
.....++++||.+++|||++++++++.+.+.++ ++.+++.||+||+++.++...... ......++|+|+++
T Consensus 360 ~~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~-------~~~~~~~vG~p~~g 432 (637)
T PRK00174 360 HPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGA-------TPLKPGSATRPLPG 432 (637)
T ss_pred ccccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCCCC-------CCcCCCcccCCCCC
Confidence 222244789999999999999999999988874 378999999999987654321110 11234579999999
Q ss_pred cEEEEecCCCC---CCCccEEEEcc--ccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcE
Q 002615 160 CDIVLVESDTV---KPDEGEIYAGG--LCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDL 234 (900)
Q Consensus 160 ~~~~i~d~~~~---~~~~GEl~v~g--~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l 234 (900)
++++|+|+++. .++.|||+|+| +++++||+++++.+.+.|.. ..++||+|||++++++||++
T Consensus 433 ~~~~i~d~~g~~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~-------------~~~g~~~TGDl~~~d~dG~l 499 (637)
T PRK00174 433 IQPAVVDEEGNPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFS-------------TFKGMYFTGDGARRDEDGYY 499 (637)
T ss_pred ceEEEECCCCCCCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhc-------------CCCCEEECCceEEEcCCCcE
Confidence 99999987663 45679999999 68999999998766554422 13579999999999999999
Q ss_pred EEEcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCC
Q 002615 235 VFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLA 314 (900)
Q Consensus 235 ~~~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~ 314 (900)
+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++.++...++.+++++++.+.....+...++|+++++++|+.+
T Consensus 500 ~~~GR~dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~ 579 (637)
T PRK00174 500 WITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEEPSDELRKELRNWVRKEIGPI 579 (637)
T ss_pred EEEEecccEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHhhcCCc
Confidence 99999999999999999999999999999999999999998887788999999988765444555678999999999999
Q ss_pred ccCCEEEEcCCcCCCCCCCcchhhhccccccc
Q 002615 315 MIPNRFVFMDSLPMTSSGKVDYASLSASTSFT 346 (900)
Q Consensus 315 ~~P~~~~~v~~lP~t~~GKidr~~L~~~~~~~ 346 (900)
++|..++++++||+|++||++|++|++.....
T Consensus 580 ~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 611 (637)
T PRK00174 580 AKPDVIQFAPGLPKTRSGKIMRRILRKIAEGE 611 (637)
T ss_pred cCCCEEEEcCCCCCCCCcchHHHHHHHHHcCC
Confidence 99999999999999999999999999876543
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-44 Score=408.92 Aligned_cols=315 Identities=27% Similarity=0.382 Sum_probs=270.6
Q ss_pred cCC--CCCCcEEEEccCcchHhHHHHHH-HHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHh
Q 002615 4 LYP--LHGEELLLFKTSISFIDHLQEFL-SAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQ 80 (900)
Q Consensus 4 ~~~--~~~~d~~l~~~p~~~~~~~~~~~-~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~ 80 (900)
.++ ++++|+++.++|++|++|+...+ .+++.|+++++.++ ..+++..++..+.++++|++.++|+++..++....
T Consensus 206 ~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~~--~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~ 283 (534)
T COG0318 206 ALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSP--EPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPE 283 (534)
T ss_pred HhcccCCCCceEEEecChHHHHHHHHHHHHHHHcCCEEEeCCC--CCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCc
Confidence 455 88999999999999999998754 45899999999852 14789999999999999999999999999887755
Q ss_pred hccCCCCCC-CcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCC
Q 002615 81 SQHNMHVPS-SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISN 159 (900)
Q Consensus 81 ~~~~~~~~~-~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~ 159 (900)
.... .++ +||.++.||+++++++++++.+.|+..++++.||+||++..++...... . ......+|+|+++
T Consensus 284 ~~~~--~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~-~------~~~~~~~G~~~pg 354 (534)
T COG0318 284 KDDD--DLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDD-L------LAKPGSVGRPLPG 354 (534)
T ss_pred cCcc--ccccceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCch-h------hhcCCcccccCCC
Confidence 4432 233 4999999999999999999999997678999999999997766543222 1 1133445999999
Q ss_pred cEEEEecCCCC---CCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEE
Q 002615 160 CDIVLVESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVF 236 (900)
Q Consensus 160 ~~~~i~d~~~~---~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~ 236 (900)
++++|+|+++. ++..|||+|+||.++.||+++|+.|++.|.. ++||+|||+|++|++|.++|
T Consensus 355 ~~v~Ivd~~~~~~~pg~vGei~irgp~v~~GY~~~pe~t~~~f~~---------------~gW~~TGDlg~~d~~G~l~i 419 (534)
T COG0318 355 VEVRIVDPDGGEVLPGEVGEIWVRGPNVMKGYWNRPEATAEAFDE---------------DGWLRTGDLGYVDEDGYLYI 419 (534)
T ss_pred cEEEEEeCCCCccCCCCceEEEEECchhhhhhcCChHHHHHhhcc---------------CCeeeecceEEEcCCccEEE
Confidence 99999987653 3557999999999999999999999987632 48999999999999999999
Q ss_pred EcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCcc
Q 002615 237 LGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMI 316 (900)
Q Consensus 237 ~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 316 (900)
+||.+|+||.+|++|+|.|||.++.+||.|.+++|++.+++..++.++|++++++... .....++|+++++++++.|++
T Consensus 420 ~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~-~~~~~~~i~~~~~~~l~~~~~ 498 (534)
T COG0318 420 VGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGD-AELTAEELRAFLRKRLALYKV 498 (534)
T ss_pred EeccceEEEeCCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCC-CCCCHHHHHHHHHhhhhcccC
Confidence 9999999999999999999999999999999999999999988999999999987532 112457899999999999999
Q ss_pred CCEEEEcCCcCCCCCCCcchhhhcccccc
Q 002615 317 PNRFVFMDSLPMTSSGKVDYASLSASTSF 345 (900)
Q Consensus 317 P~~~~~v~~lP~t~~GKidr~~L~~~~~~ 345 (900)
|+.++++++||+|++||++|++|++.+..
T Consensus 499 P~~v~~v~~lP~t~sGKi~r~~lr~~~~~ 527 (534)
T COG0318 499 PRIVVFVDELPRTASGKIDRRALREEYRA 527 (534)
T ss_pred CeEEEEeCCCCCCCchhhhHHHHHHHHHh
Confidence 99999999999999999999999876543
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=413.49 Aligned_cols=325 Identities=19% Similarity=0.258 Sum_probs=268.3
Q ss_pred ccCCCCCCcEEEEccCcchHhHH-HHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHL-QEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
..++++++|++++.+|++|+.++ ..++.+|+.|+++++++......++..+++.|+++++|++.++|++++.|.+....
T Consensus 267 ~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~ 346 (628)
T TIGR02316 267 AIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAA 346 (628)
T ss_pred HhcCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCc
Confidence 45789999999999999999986 56899999999999986433456899999999999999999999999988765332
Q ss_pred ccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcE
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161 (900)
Q Consensus 82 ~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 161 (900)
.....++++||.+++|||++++++.+++.+.+ +..+++.||+||++..++...... ........++|+|+++++
T Consensus 347 ~~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~-~~~~~~~yG~TE~~~~~~~~~~~~-----~~~~~~~gs~G~p~~g~~ 420 (628)
T TIGR02316 347 WLRKHDLSSLHWLFLAGEPLDEPTAHWITDGL-GKPVIDNYWQTETGWPVLAIMPGL-----DLKPVKLGSPGLPMYGYH 420 (628)
T ss_pred ccccCCccceeEEEEecCCCCHHHHHHHHHHh-CCCEEecccccccCceeecCCCCC-----CcCCCCCCCcccCcCCce
Confidence 22234578999999999999999999998877 678999999999985433221110 001123457899999999
Q ss_pred EEEecC-CC---CCCCccEEEEccc---cccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcE
Q 002615 162 IVLVES-DT---VKPDEGEIYAGGL---CLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDL 234 (900)
Q Consensus 162 ~~i~d~-~~---~~~~~GEl~v~g~---~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l 234 (900)
++|+|+ ++ +.++.|||+++|| +++.||+++++.+.+.|... ..++||+|||+|++|+||++
T Consensus 421 v~i~d~~~g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~------------~~~~~~~TGD~g~~d~dG~l 488 (628)
T TIGR02316 421 LRVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSH------------FKRPLYSSFDWGIRDEDGYT 488 (628)
T ss_pred EEEEECCCCCCCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhc------------CCCCEEECCceEEEcCCCcE
Confidence 999987 33 2456799999998 57889999876554443221 13579999999999999999
Q ss_pred EEEcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCC-----chHHHHHHHHHHHHh
Q 002615 235 VFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKT-----SSEIFLSSIKSWVSS 309 (900)
Q Consensus 235 ~~~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~-----~~~~~~~~l~~~l~~ 309 (900)
+|+||+||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.+++||++++... ..+...++|++++++
T Consensus 489 ~i~GR~dd~ik~~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~ 568 (628)
T TIGR02316 489 FILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVR 568 (628)
T ss_pred EEEEcCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCcccccccchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998888889999999875432 123456789999999
Q ss_pred hCCCCccCCEEEEcCCcCCCCCCCcchhhhcccccc
Q 002615 310 KLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSF 345 (900)
Q Consensus 310 ~l~~~~~P~~~~~v~~lP~t~~GKidr~~L~~~~~~ 345 (900)
+|+.|++|+.++++++||+|++|||+|++|++.+..
T Consensus 569 ~L~~~~~P~~v~~v~~lP~t~sGKi~r~~L~~~~~~ 604 (628)
T TIGR02316 569 QLGAVARPARVYFVAALPKTRSGKLLRRSIQALAEG 604 (628)
T ss_pred hcCCCcCCCEEEEcCCCCCCCchHHHHHHHHHHHcC
Confidence 999999999999999999999999999999987654
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=411.78 Aligned_cols=319 Identities=17% Similarity=0.244 Sum_probs=266.2
Q ss_pred cCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhh--hhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 4 LYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIEL--KKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 4 ~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~--~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
.++..++|++++.+|++|..+...++.+|+.|+++++++.... ...+..+++.++++++|++.++|++++.|++....
T Consensus 290 ~~~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~ 369 (647)
T PTZ00237 290 IIEKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPE 369 (647)
T ss_pred hcCCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCcc
Confidence 3567789999999999999877778999999999999753211 12268899999999999999999999999875322
Q ss_pred c---cCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccC
Q 002615 82 Q---HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPIS 158 (900)
Q Consensus 82 ~---~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~ 158 (900)
. ....++++||.+++|||++++++.+++.+.+ ++.+++.||+||+++.++... .. ......++|+|++
T Consensus 370 ~~~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~-g~~i~~~yG~TE~~~~~~~~~-~~-------~~~~~~s~G~p~~ 440 (647)
T PTZ00237 370 ATIIRSKYDLSNLKEIWCGGEVIEESIPEYIENKL-KIKSSRGYGQTEIGITYLYCY-GH-------INIPYNATGVPSI 440 (647)
T ss_pred ccccccccCcchheEEEecCccCCHHHHHHHHHhc-CCCEEeeechHHhChhhhccC-CC-------CCCCCCCCccCcC
Confidence 1 1223578999999999999999999999888 689999999999986544211 10 1113467899999
Q ss_pred CcEEEEecCCCC---CCCccEEEEccc---cccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCC
Q 002615 159 NCDIVLVESDTV---KPDEGEIYAGGL---CLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSG 232 (900)
Q Consensus 159 ~~~~~i~d~~~~---~~~~GEl~v~g~---~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G 232 (900)
+++++|+|+++. .++.|||+++|| +++.||+++++.+.+.|.. .++||+|||+|++++||
T Consensus 441 g~~~~i~d~~g~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~--------------~~g~~~TGDlg~~d~dG 506 (647)
T PTZ00237 441 FIKPSILSEDGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSK--------------FPGYYNSGDLGFKDENG 506 (647)
T ss_pred CceEEEECCCCCCCCCCCceEEEEeccCCchhhCceeCCHHHHHHHHhC--------------CCCEEECCcEEEECCCC
Confidence 999999987663 456799999986 7899999999888766632 25799999999999999
Q ss_pred cEEEEcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCC----chHHHHHHHHHHHH
Q 002615 233 DLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKT----SSEIFLSSIKSWVS 308 (900)
Q Consensus 233 ~l~~~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~----~~~~~~~~l~~~l~ 308 (900)
+++|+||+||+||++|+||+|.|||++|.+||.|.+++|++.+++..++.+++||++++... ..+.+.++|+++++
T Consensus 507 ~l~i~GR~dd~i~~~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~l~~~i~~~~~ 586 (647)
T PTZ00237 507 YYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIIT 586 (647)
T ss_pred eEEEEeccCCEEEECCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccCccccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999877788999999874321 22455678899999
Q ss_pred hhCCCCccCCEEEEcCCcCCCCCCCcchhhhcccccc
Q 002615 309 SKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSF 345 (900)
Q Consensus 309 ~~l~~~~~P~~~~~v~~lP~t~~GKidr~~L~~~~~~ 345 (900)
++|+.+++|+.|+++++||+|++|||+|+.|+++...
T Consensus 587 ~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~ 623 (647)
T PTZ00237 587 QDIESLAVLRKIIIVNQLPKTKTGKIPRQIISKFLND 623 (647)
T ss_pred hhcCccccCcEEEEcCCCCCCCCccEeHHHHHHHHcC
Confidence 9999999999999999999999999999999987643
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=403.51 Aligned_cols=305 Identities=23% Similarity=0.290 Sum_probs=262.8
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
+.+++.++|+++..+|++|..++..++.++..|+++++.+ .+++..+++.++++++|++.++|++++.++......
T Consensus 241 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~----~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~ 316 (549)
T PRK07788 241 SRVPFRAGETTLLPAPMFHATGWAHLTLAMALGSTVVLRR----RFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEV 316 (549)
T ss_pred hhCCCCcCCeEEEccchHHHHHHHHHHHHHHhCCEEEECC----CCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccc
Confidence 3567889999999999999999988889999999999985 678999999999999999999999999998765432
Q ss_pred cCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEE
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 162 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 162 (900)
.....+++||.+++|||++++++++.+.+.+ +..++|.||+||++..+.... .. ......++|+|++++++
T Consensus 317 ~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~-~~-------~~~~~~~vG~~~~~~~~ 387 (549)
T PRK07788 317 LAKYDTSSLKIIFVSGSALSPELATRALEAF-GPVLYNLYGSTEVAFATIATP-ED-------LAEAPGTVGRPPKGVTV 387 (549)
T ss_pred cCCCCCCceeEEEEeCCCCCHHHHHHHHHHh-CccceeccCcchhchhhccCh-hh-------hhhcCCCcccCCCCcEE
Confidence 2223478999999999999999999999988 578999999999886543221 10 01244679999999999
Q ss_pred EEecCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcc
Q 002615 163 VLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 239 (900)
Q Consensus 163 ~i~d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 239 (900)
+++|+++ +.++.|||+|+|+.++.||+++++. . + .++||+|||+++++++|.++|+||
T Consensus 388 ~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~--~-~----------------~~g~~~TGDl~~~~~~g~l~~~GR 448 (549)
T PRK07788 388 KILDENGNEVPRGVVGRIFVGNGFPFEGYTDGRDK--Q-I----------------IDGLLSSGDVGYFDEDGLLFVDGR 448 (549)
T ss_pred EEECCCcCCCCCCCeEEEEEeCCCccccccCCCcc--c-c----------------cCCceecCceEEEcCCCCEEEecc
Confidence 9998766 3466799999999999999998764 1 1 257999999999999999999999
Q ss_pred cCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCE
Q 002615 240 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 319 (900)
Q Consensus 240 ~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~ 319 (900)
+||+||++|++|+|.|||++|.+||.|.+++|++.+++..++.++++|+++++.... .++|+++++++||.|++|..
T Consensus 449 ~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~~~~~l~~~~~P~~ 525 (549)
T PRK07788 449 DDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALD---EDAIKDYVRDNLARYKVPRD 525 (549)
T ss_pred CcceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCCCC---HHHHHHHHHHhhhcCCCCcE
Confidence 999999999999999999999999999999999988877778899999987654322 36899999999999999999
Q ss_pred EEEcCCcCCCCCCCcchhhhccc
Q 002615 320 FVFMDSLPMTSSGKVDYASLSAS 342 (900)
Q Consensus 320 ~~~v~~lP~t~~GKidr~~L~~~ 342 (900)
++++++||+|++|||+|++|+++
T Consensus 526 i~~v~~lP~t~~GKi~r~~L~~~ 548 (549)
T PRK07788 526 VVFLDELPRNPTGKVLKRELREM 548 (549)
T ss_pred EEEeCCCCCCCCcCEeHHHhhcc
Confidence 99999999999999999999764
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=396.48 Aligned_cols=322 Identities=18% Similarity=0.173 Sum_probs=251.9
Q ss_pred cCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhcc
Q 002615 4 LYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQH 83 (900)
Q Consensus 4 ~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~ 83 (900)
.++++++|++++.+|++|+.++..++.+|+.|+++++.+. ..++..+++.|+++++|++.++|++++.|++......
T Consensus 154 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~---~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~ 230 (499)
T PLN03051 154 HMDIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGG---APLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAM 230 (499)
T ss_pred hcCCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCC---CCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCcccc
Confidence 4688999999999999999998888999999999999852 2467889999999999999999999999876432011
Q ss_pred CCCCCCCcCEEEEeccCCChhhHHHHHhhCC-CceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEE
Q 002615 84 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFP-NISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 162 (900)
Q Consensus 84 ~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 162 (900)
...++++||.+++|||++++++.+.+.+.++ ++.+++.||+||++..++.... . ......++|+|.+++++
T Consensus 231 ~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~-~-------~~~~~~~~G~p~~~~~~ 302 (499)
T PLN03051 231 EGLDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTL-L-------QPQAPGAFSTASLGTRF 302 (499)
T ss_pred ccCCchhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccc-c-------CCCCCccccCCCCCceE
Confidence 1234689999999999999999887776331 4789999999998754332110 0 01134579999999999
Q ss_pred EEecCCCC---CC--CccEEEEccccc--cccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEE
Q 002615 163 VLVESDTV---KP--DEGEIYAGGLCL--SNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLV 235 (900)
Q Consensus 163 ~i~d~~~~---~~--~~GEl~v~g~~~--~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~ 235 (900)
+|+|+++. .+ ..|||+++|+.+ +.||++++. +. .|.. ..++. ...+.+||+|||+|++|+||+++
T Consensus 303 ~ivd~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~~-~~-~~~~--g~~~~----~~~~~~~~~TGDlg~~d~dG~l~ 374 (499)
T PLN03051 303 VLLNDNGVPYPDDQPCVGEVALAPPMLGASDRLLNADH-DK-VYYK--GMPMY----GSKGMPLRRHGDIMKRTPGGYFC 374 (499)
T ss_pred EEECCCCCCCCCCCCcceEEEEecCcCCCCccccCCcc-cc-eeee--cCCcc----ccCCcceeecCCeEEECCCCcEE
Confidence 99987663 23 369999999976 579998653 32 3321 10000 01235699999999999999999
Q ss_pred EEcccCCcEEECceeeChHHHHHHHhC-CCCeeEEEEEEeecCCce-EEEEEEE---EecCCC--CchHHHHHHHHHHHH
Q 002615 236 FLGRKDRTIKINGQRMALEEIEHTLRG-HPDVVDTAVVSHKHQGEL-VILVAFI---VLKEKK--TSSEIFLSSIKSWVS 308 (900)
Q Consensus 236 ~~GR~dd~ik~~G~rv~~~~iE~~l~~-~~~v~~~~v~~~~~~~~~-~~l~~~v---~~~~~~--~~~~~~~~~l~~~l~ 308 (900)
|+||+||+||++|+||+|.|||++|.+ ||.|.+|+|++.++...+ +.++++| +++++. ...+.+.+.++++++
T Consensus 375 ~~gR~~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~~~~~~~~~~l~~~~~~~l~ 454 (499)
T PLN03051 375 VQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQ 454 (499)
T ss_pred EEeccCCEEeeCCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcceecccccccchHHHHHHHHHHHH
Confidence 999999999999999999999999996 999999999999887766 6788888 665543 223445556667777
Q ss_pred hhCCCCccCCEEEEcCCcCCCCCCCcchhhhccccc
Q 002615 309 SKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTS 344 (900)
Q Consensus 309 ~~l~~~~~P~~~~~v~~lP~t~~GKidr~~L~~~~~ 344 (900)
++|+.++.|..++++++||+|++|||+|++|++.+.
T Consensus 455 ~~l~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~ 490 (499)
T PLN03051 455 TNLNPLFKVSRVKIVPELPRNASNKLLRRVLRDQLK 490 (499)
T ss_pred hhcCCccCCceEEEcCCCCCCCCccHHHHHHHHHHH
Confidence 889887777789999999999999999999986543
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=399.12 Aligned_cols=305 Identities=23% Similarity=0.346 Sum_probs=252.7
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHH-HHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
+.++++++|++++++|++|.+++.. ++.++..|+++++... ..++..+++.|+++++|++.++|++++.+++....
T Consensus 217 ~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 293 (539)
T PRK06334 217 KFFSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYN---PLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKK 293 (539)
T ss_pred HhcCCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEecC---CCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhh
Confidence 3577889999999999999999854 7889999999998742 46899999999999999999999999999876543
Q ss_pred ccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcE
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161 (900)
Q Consensus 82 ~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 161 (900)
.. ..+++||.+++|||++++++.+.+.+.+|++.+++.||+||++.+++..... ......++|+|+++++
T Consensus 294 ~~--~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~--------~~~~~~~vG~p~~g~~ 363 (539)
T PRK06334 294 QE--SCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINTVN--------SPKHESCVGMPIRGMD 363 (539)
T ss_pred cc--cccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEeccCC--------CCCCCCcCceecCCCE
Confidence 22 3468999999999999999999999999889999999999998766543211 1113457899999999
Q ss_pred EEEecCCC----CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEE
Q 002615 162 IVLVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFL 237 (900)
Q Consensus 162 ~~i~d~~~----~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~ 237 (900)
++|+|++. ++++.|||+|+|++++.||+++|+.+. |... ++++||+|||+|+++++|+++|+
T Consensus 364 v~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~--~~~~------------~~~~w~~TGD~g~~d~~G~l~~~ 429 (539)
T PRK06334 364 VLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQG--FVEL------------GGETWYVTGDLGYVDRHGELFLK 429 (539)
T ss_pred EEEEcCCCCccCCCCceEEEEEecCcccccccCCccccc--ceee------------CCceeEECCCEEEECCCCeEEEE
Confidence 99998543 356789999999999999999988543 2211 14689999999999999999999
Q ss_pred cccCCcEEECceeeChHHHHHHHhCCCCeeE------EEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhh-
Q 002615 238 GRKDRTIKINGQRMALEEIEHTLRGHPDVVD------TAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK- 310 (900)
Q Consensus 238 GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~------~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~- 310 (900)
||.||+||++|++|+|.|||++|.+||+|.+ ++|++.++. ...++++++... ..+++++++++.
T Consensus 430 GR~~d~ik~~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~-------~~~~~~~~l~~~~ 500 (539)
T PRK06334 430 GRLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGE--KVRLCLFTTFPT-------SISEVNDILKNSK 500 (539)
T ss_pred eccCCeEEECCEEECHHHHHHHHHHccCCccccccCceEEEcCCCC--ceEEEEEEeccC-------ChHHHHHHHHhcC
Confidence 9999999999999999999999999999987 666666643 234556655321 135788889886
Q ss_pred CCCCccCCEEEEcCCcCCCCCCCcchhhhcccc
Q 002615 311 LPLAMIPNRFVFMDSLPMTSSGKVDYASLSAST 343 (900)
Q Consensus 311 l~~~~~P~~~~~v~~lP~t~~GKidr~~L~~~~ 343 (900)
++.|++|+.++++++||+|++|||||++|+++.
T Consensus 501 ~~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 533 (539)
T PRK06334 501 TSSILKISYHHQVESIPMLGTGKPDYCSLNALA 533 (539)
T ss_pred CcccccchheeeecccccccCCcccHHHHHHHH
Confidence 789999999999999999999999999998653
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=349.34 Aligned_cols=307 Identities=24% Similarity=0.381 Sum_probs=269.9
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHH--HHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQE--FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQ 80 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~--~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~ 80 (900)
+..++++.++.|+.+|..|.+.+.. .++.+++|+++|+.+ ..+|..-+.+|++|+||+..++|.+...++.+.+
T Consensus 223 EiC~~~~~tvyL~~LP~AHNfplssPG~LGv~~agG~VVla~----~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e 298 (542)
T COG1021 223 EICGFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAP----DPSPELCFPLIERHGVTVTALVPPLASLWLQAAE 298 (542)
T ss_pred hhhCcCccceEEEecccccCCCCCCcchhheeeeccEEEECC----CCCHHHHHHHHHHhccceEEeccHHHHHHHHhhh
Confidence 4678899999999999999988865 899999999999997 6789999999999999999999999999998876
Q ss_pred hccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeecc-CC
Q 002615 81 SQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPI-SN 159 (900)
Q Consensus 81 ~~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~-~~ 159 (900)
.. ..+++|||.+-+||..+++++.+++...+ ++.+-+.+||.|.-+. +....+.++. -...-|+|+ |.
T Consensus 299 ~~--~~~LsSLrllQVGGarl~~~~Arrv~~~l-gC~LQQVFGMAEGLvn--yTRLDDp~E~------i~~TQGrPlsP~ 367 (542)
T COG1021 299 WE--RADLSSLRLLQVGGARLSATLARRVPAVL-GCQLQQVFGMAEGLVN--YTRLDDPPEI------IIHTQGRPLSPD 367 (542)
T ss_pred cc--cCCchheeEEeecCcccCHHHHhhchhhh-CchHHHHhhhhhhhhc--ccccCCchHh------eeecCCCcCCCc
Confidence 64 35689999999999999999999999998 9999999999995432 2222222221 233568887 56
Q ss_pred cEEEEecCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEE
Q 002615 160 CDIVLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVF 236 (900)
Q Consensus 160 ~~~~i~d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~ 236 (900)
-+++|+|.++ .++++|||..+||...+||++.|+-++..|.. +++|+|||++++++||++.+
T Consensus 368 DEvrvvD~dg~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a---------------~GFYrsGD~V~~~~dGyl~V 432 (542)
T COG1021 368 DEVRVVDADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDA---------------DGFYRSGDLVRRDPDGYLVV 432 (542)
T ss_pred ceeEEecCCCCCCCCCCcceeeecCCeeeeeeccCchhhhhccCc---------------CCceecCceeEecCCceEEE
Confidence 7899999877 46788999999999999999999999999854 89999999999999999999
Q ss_pred EcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhh-CCCCc
Q 002615 237 LGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK-LPLAM 315 (900)
Q Consensus 237 ~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~-l~~~~ 315 (900)
.||.+|||+++|++|-.+|||+.|..||.|.+|+++..+++-.+++.+|||++++.... ..+++.+|.+. +..|+
T Consensus 433 ~GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~~~~----~~qlr~~L~~~GlAa~K 508 (542)
T COG1021 433 EGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPLR----AAQLRRFLRERGLAAFK 508 (542)
T ss_pred EeeehhhhccccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCCCCC----HHHHHHHHHHcchhhhc
Confidence 99999999999999999999999999999999999999999889999999999876533 24788888765 88999
Q ss_pred cCCEEEEcCCcCCCCCCCcchhhhcccc
Q 002615 316 IPNRFVFMDSLPMTSSGKVDYASLSAST 343 (900)
Q Consensus 316 ~P~~~~~v~~lP~t~~GKidr~~L~~~~ 343 (900)
+|++|.++++||+|+-||||+++|++..
T Consensus 509 ~PDrie~v~~~P~T~VGKIdKk~Lr~~l 536 (542)
T COG1021 509 LPDRIEFVDSLPLTAVGKIDKKALRRRL 536 (542)
T ss_pred CCcceeecccCCCcccccccHHHHHHHh
Confidence 9999999999999999999999998654
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-42 Score=403.04 Aligned_cols=324 Identities=17% Similarity=0.202 Sum_probs=266.7
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
..+++.++|++++.+++.|+.+. .++.+|+.|+++++.+......++..++++++++++|++.++|++++.+.......
T Consensus 298 ~~~~~~~~d~~~~~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~ 376 (655)
T PRK03584 298 LHCDLGPGDRFFWYTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVP 376 (655)
T ss_pred HhcCCCCCCEEEEcCCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCc
Confidence 35788999999999999998653 36789999999999854333568999999999999999999999999887542211
Q ss_pred cCCCCCCCcCEEEEeccCCChhhHHHHHhhC-CCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcE
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLF-PNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~-~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 161 (900)
....++++||.+++|||++++++++.+.+.+ +++.+++.||+||++....... .. ......++|.|+++++
T Consensus 377 ~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~-~~-------~~~~~g~~g~p~~g~~ 448 (655)
T PRK03584 377 GETHDLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGN-PL-------LPVYRGEIQCRGLGMA 448 (655)
T ss_pred cccCChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCC-CC-------CCcCCCccCCCcCCce
Confidence 1224578999999999999999999999887 4689999999999864332111 00 1123467899999999
Q ss_pred EEEecCCCC--CCCccEEEEccc--cccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEE
Q 002615 162 IVLVESDTV--KPDEGEIYAGGL--CLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFL 237 (900)
Q Consensus 162 ~~i~d~~~~--~~~~GEl~v~g~--~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~ 237 (900)
++|+|+++. .++.|||+|+|+ +++.||+++++.+. |...... ...+||+|||+|++|+||+++|+
T Consensus 449 ~~ivd~~g~~~~g~~GeL~v~gp~p~~~~gy~~~~~~~~--~~~~~~~---------~~~g~~~TGDl~~~d~dG~l~i~ 517 (655)
T PRK03584 449 VEAWDEDGRPVVGEVGELVCTKPFPSMPLGFWNDPDGSR--YRDAYFD---------TFPGVWRHGDWIEITEHGGVVIY 517 (655)
T ss_pred eEEECCCCCCCCCCceEEEEccCCCCCcceeeCCCccch--HHHhhhc---------cCCCEeecCCeEEECCCCeEEEE
Confidence 999997764 367799999996 78999999987543 2111100 12468999999999999999999
Q ss_pred cccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccC
Q 002615 238 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP 317 (900)
Q Consensus 238 GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P 317 (900)
||+||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.+++||+++++....+.+.++|+++++++|+.|++|
T Consensus 518 GR~dd~Ik~~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~L~~~~~P 597 (655)
T PRK03584 518 GRSDATLNRGGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVTLDDALRARIRTTIRTNLSPRHVP 597 (655)
T ss_pred eeccCeeecCcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCCCCcHHHHHHHHHHHHhhCCCCcCC
Confidence 99999999999999999999999999999999999999877788999999998765555556678999999999999999
Q ss_pred CEEEEcCCcCCCCCCCcchhhhccccccc
Q 002615 318 NRFVFMDSLPMTSSGKVDYASLSASTSFT 346 (900)
Q Consensus 318 ~~~~~v~~lP~t~~GKidr~~L~~~~~~~ 346 (900)
..|+++++||+|++|||+|++|++.+...
T Consensus 598 ~~i~~v~~lP~t~sGKi~r~~lr~~~~~~ 626 (655)
T PRK03584 598 DKIIAVPDIPRTLSGKKVELPVKKLLHGR 626 (655)
T ss_pred CEEEECCCCCCCCCccchHHHHHHHHcCC
Confidence 99999999999999999999999876543
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=399.46 Aligned_cols=310 Identities=19% Similarity=0.287 Sum_probs=259.3
Q ss_pred ccCCCCCCcEEEEccCcchHhHHH-HHHHHHHhCCeEEecCchhhh--hcHHHHHHHHHHcCeeEEEecHHHHHHHHHHH
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQ-EFLSAILTACTLVVPPIIELK--KNLISIIHFLQAYSISRLTTVPSLMRVVLPAL 79 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~lv~~~~~~~~--~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~ 79 (900)
+.+++.++|++++.+|++|..++. .++.+|..|++++++++.... .....+++.++++++|++.++|+++..++...
T Consensus 247 ~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 326 (632)
T PRK07529 247 LLLGLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVP 326 (632)
T ss_pred HhcCCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCc
Confidence 356788999999999999998875 589999999999998643221 12467889999999999999999999998654
Q ss_pred hhccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCC
Q 002615 80 QSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISN 159 (900)
Q Consensus 80 ~~~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~ 159 (900)
... .++++||.+++||+++++++.+.+.+.+ +++++|.||+||++++++..... ......++|+|+++
T Consensus 327 ~~~---~~~~slr~v~~gg~~l~~~l~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~--------~~~~~~svG~~~p~ 394 (632)
T PRK07529 327 VDG---HDISSLRYALCGAAPLPVEVFRRFEAAT-GVRIVEGYGLTEATCVSSVNPPD--------GERRIGSVGLRLPY 394 (632)
T ss_pred ccC---CCccceEEEEEcCCCCCHHHHHHHHHHh-CCcEeeeecccccCcccccCCcc--------ccccCCCcccccCC
Confidence 322 3478999999999999999999999887 89999999999998766543211 11245689999999
Q ss_pred cEEEEe--cCCC------CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccC
Q 002615 160 CDIVLV--ESDT------VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS 231 (900)
Q Consensus 160 ~~~~i~--d~~~------~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~ 231 (900)
+.++++ |+++ ++++.|||+|+|++++.||++++. +...|. .++||+|||+|++++|
T Consensus 395 ~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~~-~~~~~~---------------~~gw~~TGDlg~~d~d 458 (632)
T PRK07529 395 QRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAH-NKGLWL---------------EDGWLNTGDLGRIDAD 458 (632)
T ss_pred ceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCcc-cccccc---------------CCCceEcCcEEEEcCC
Confidence 999885 4433 346779999999999999998654 444432 3689999999999999
Q ss_pred CcEEEEcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhC
Q 002615 232 GDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKL 311 (900)
Q Consensus 232 G~l~~~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l 311 (900)
|+++|.||+||+||++|++|+|.+||++|.+||.|.+|+|++.++...++.++++|++.+..... .+++++++++++
T Consensus 459 G~l~i~GR~~d~i~~~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~~~---~~~l~~~~~~~l 535 (632)
T PRK07529 459 GYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASAT---EAELLAFARDHI 535 (632)
T ss_pred ceEEEEecccCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCCCCC---HHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999998887788899999988654433 357899999998
Q ss_pred C-CCccCCEEEEcCCcCCCCCCCcchhhhcccc
Q 002615 312 P-LAMIPNRFVFMDSLPMTSSGKVDYASLSAST 343 (900)
Q Consensus 312 ~-~~~~P~~~~~v~~lP~t~~GKidr~~L~~~~ 343 (900)
+ .+++|..|+++++||+|++|||+|++|++.+
T Consensus 536 ~~~~~~P~~i~~v~~lP~t~~GKi~r~~Lr~~~ 568 (632)
T PRK07529 536 AERAAVPKHVRILDALPKTAVGKIFKPALRRDA 568 (632)
T ss_pred chhccCCcEEEEecCCCCCCCCcccHHHHHHHH
Confidence 7 4799999999999999999999999998654
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-42 Score=397.12 Aligned_cols=313 Identities=22% Similarity=0.283 Sum_probs=269.4
Q ss_pred ccCCCCCCcEEEEccCcchHhHH-HHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHL-QEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
..+++.++|++++.+|++|..+. ..++.+++.|+++++.+. .+++..+++.|+++++|++.++|++++.+......
T Consensus 239 ~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 315 (570)
T PRK04319 239 YVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGG---RFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDD 315 (570)
T ss_pred HhcCCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEECC---CCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCc
Confidence 35678899999999999999875 558999999999998742 56899999999999999999999999999865322
Q ss_pred ccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcE
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161 (900)
Q Consensus 82 ~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 161 (900)
......+++||.+++|||++++++.+.+.+.+ +.++++.||+||++..++..... ....+.++|+|+++++
T Consensus 316 ~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~i~~~YG~tE~~~~~~~~~~~--------~~~~~~~~G~p~~g~~ 386 (570)
T PRK04319 316 LVKKYDLSSLRHILSVGEPLNPEVVRWGMKVF-GLPIHDNWWMTETGGIMIANYPA--------MDIKPGSMGKPLPGIE 386 (570)
T ss_pred ccccCCcccceEEEEcccCCCHHHHHHHHHHh-CCCeEeceeecccCCEEEecCCC--------CCCCCCcCcCCCCCCE
Confidence 22223478999999999999999999998887 68899999999998755432111 1124567999999999
Q ss_pred EEEecCCC---CCCCccEEEEcc--ccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEE
Q 002615 162 IVLVESDT---VKPDEGEIYAGG--LCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVF 236 (900)
Q Consensus 162 ~~i~d~~~---~~~~~GEl~v~g--~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~ 236 (900)
++|+|+++ ++++.|||+++| +++++||+++++.+.+.|. ++||+|||+++++++|++++
T Consensus 387 ~~i~d~~~~~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~----------------~gw~~TGDl~~~~~~g~l~~ 450 (570)
T PRK04319 387 AAIVDDQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFA----------------GDWYVSGDSAYMDEDGYFWF 450 (570)
T ss_pred EEEECCCCCCCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhhc----------------CCceEeCcEEEECCCeeEEE
Confidence 99998765 356779999987 8999999999998887762 47999999999999999999
Q ss_pred EcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCcc
Q 002615 237 LGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMI 316 (900)
Q Consensus 237 ~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 316 (900)
+||+||+||++|++|+|.|||++|.+||.|.+++|++.++...++.+++++++.++....+.+.++|+++++++|+.|++
T Consensus 451 ~GR~~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 530 (570)
T PRK04319 451 QGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSEELKEEIRGFVKKGLGAHAA 530 (570)
T ss_pred EecCCCEEEECCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCCCCCHHHHHHHHHHHHHhcccccC
Confidence 99999999999999999999999999999999999998887777889999998776544555667899999999999999
Q ss_pred CCEEEEcCCcCCCCCCCcchhhhcccc
Q 002615 317 PNRFVFMDSLPMTSSGKVDYASLSAST 343 (900)
Q Consensus 317 P~~~~~v~~lP~t~~GKidr~~L~~~~ 343 (900)
|..++++++||+|++||++|++|+++.
T Consensus 531 P~~i~~v~~iP~t~~GKv~r~~L~~~~ 557 (570)
T PRK04319 531 PREIEFKDKLPKTRSGKIMRRVLKAWE 557 (570)
T ss_pred CcEEEEeCCCCCCCchhhhHHHHHHHH
Confidence 999999999999999999999998764
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=395.30 Aligned_cols=320 Identities=16% Similarity=0.193 Sum_probs=261.4
Q ss_pred cCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhcc
Q 002615 4 LYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQH 83 (900)
Q Consensus 4 ~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~ 83 (900)
.++++++|++++.+|+.|+.+. .++.+|+.|+++++++......++..++++++++++|++..+|++++.+........
T Consensus 300 ~~~~~~~d~~~~~~~~~~~~~~-~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~ 378 (652)
T TIGR01217 300 HCDLGPGDRLFYYTTTGWMMWN-WLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPA 378 (652)
T ss_pred ccCCCCCcEEEEeCCcchhhhH-HHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCcc
Confidence 5789999999999999998643 366899999999998532223478899999999999999888888877654321111
Q ss_pred CCCCCCCcCEEEEeccCCChhhHHHHHhhCC-CceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEE
Q 002615 84 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFP-NISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 162 (900)
Q Consensus 84 ~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 162 (900)
...++++||.+++|||++++++.+.+.+.++ +..+.+.||+||++....... +. .......+|.|.+++++
T Consensus 379 ~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~----~~----~~~~~g~~g~p~~g~~v 450 (652)
T TIGR01217 379 RTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGAN----PT----LPVHIGEIQAPGLGTAV 450 (652)
T ss_pred ccCChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCC----CC----CCCcCCccCCCcCCCce
Confidence 2245789999999999999999999988773 467889999999753222110 00 01133568999999999
Q ss_pred EEecCCCC--CCCccEEEEccc--cccccccCCCCCCc--cchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEE
Q 002615 163 VLVESDTV--KPDEGEIYAGGL--CLSNGYFSESTFMP--SEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVF 236 (900)
Q Consensus 163 ~i~d~~~~--~~~~GEl~v~g~--~~~~gY~~~~~~~~--~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~ 236 (900)
+++|+++. +++.|||+++|+ +++.|||++|+.+. +.+.. ..++||+|||+|++|+||+++|
T Consensus 451 ~ivd~~g~~~~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~-------------~~~g~~~tGDlg~~d~dG~l~i 517 (652)
T TIGR01217 451 QSWDPEGKPVTGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFD-------------TYPGVWRHGDWITLTPRGGIVI 517 (652)
T ss_pred EEECCCCCCCCCCccEEEEecCCCccccceeCCCccchhHHhhhc-------------CCCCEEEcCCcEEECCCCcEEE
Confidence 99988764 367899999996 68999999998653 11111 1246899999999999999999
Q ss_pred EcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCcc
Q 002615 237 LGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMI 316 (900)
Q Consensus 237 ~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 316 (900)
+||+||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.+++||+++++....+.+.++|+++++++|+.|++
T Consensus 518 ~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 597 (652)
T TIGR01217 518 HGRSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGATLDDALLDRIKRTIRAGLSPRHV 597 (652)
T ss_pred EecccCeEecCCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCCcC
Confidence 99999999999999999999999999999999999999998888899999999876555555668999999999999999
Q ss_pred CCEEEEcCCcCCCCCCCcchhhhcccccc
Q 002615 317 PNRFVFMDSLPMTSSGKVDYASLSASTSF 345 (900)
Q Consensus 317 P~~~~~v~~lP~t~~GKidr~~L~~~~~~ 345 (900)
|+.|+++++||+|++|||+|+.|++.+..
T Consensus 598 P~~i~~v~~lP~T~sGKi~r~~Lr~~~~~ 626 (652)
T TIGR01217 598 PDEIIEVPGIPHTLTGKRVEVAVKRVLQG 626 (652)
T ss_pred CCEEEECCCCCCCCCccChHHHHHHHHcC
Confidence 99999999999999999999999987643
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=398.98 Aligned_cols=325 Identities=22% Similarity=0.291 Sum_probs=267.1
Q ss_pred ccCCCCCCcEEEEccCcchHhHH-HHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHL-QEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
..+++.++|++++.+|++|..+. ..++.+|+.|+++++.+......++..++++|+++++|++.++|++++.+.+....
T Consensus 268 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~ 347 (629)
T PRK10524 268 TIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPA 347 (629)
T ss_pred HhcCCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcc
Confidence 35788999999999999998875 56899999999999986443456889999999999999999999999988764322
Q ss_pred ccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcE
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161 (900)
Q Consensus 82 ~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 161 (900)
.....++++||.+++|||++++++.+++.+.+ ++++++.||+||++..++..... . ........++|+|+++++
T Consensus 348 ~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~-~----~~~~~~~~~~G~p~~g~~ 421 (629)
T PRK10524 348 LLRKHDLSSLRALFLAGEPLDEPTASWISEAL-GVPVIDNYWQTETGWPILAIARG-V----EDRPTRLGSPGVPMYGYN 421 (629)
T ss_pred cccccChhheeEEEEeCCCCCHHHHHHHHHhc-CCCeEeccccccccchhhcCCCC-c----ccCcCCCCCcccCcCCce
Confidence 11223478999999999999999999998887 68899999999998433322111 0 001123567899999999
Q ss_pred EEEecC-CC---CCCCccEEEEccc---cccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcE
Q 002615 162 IVLVES-DT---VKPDEGEIYAGGL---CLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDL 234 (900)
Q Consensus 162 ~~i~d~-~~---~~~~~GEl~v~g~---~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l 234 (900)
++|+|+ ++ +.++.|||+++|| +++.||+++++.+.+.|.... .++||+|||+|++++||++
T Consensus 422 ~~i~d~~~g~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~TGDl~~~d~dG~l 489 (629)
T PRK10524 422 VKLLNEVTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLF------------GRQVYSTFDWGIRDADGYY 489 (629)
T ss_pred EEEEeCCCCCCCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccC------------CCcEEEcCCcEEEcCCCcE
Confidence 999987 55 3456799999998 578899998765544432211 3579999999999999999
Q ss_pred EEEcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCc-----hHHHHHHHHHHHHh
Q 002615 235 VFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTS-----SEIFLSSIKSWVSS 309 (900)
Q Consensus 235 ~~~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~-----~~~~~~~l~~~l~~ 309 (900)
+|+||.||+||++|+||+|.|||++|.+||.|.+++|++.++...++.+++|++++..... .+.+.++|++++++
T Consensus 490 ~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~ 569 (629)
T PRK10524 490 FILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSLADREARLALEKEIMALVDS 569 (629)
T ss_pred EEEEEecCeEEeCCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCccccccchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999888777889999998764321 23456789999999
Q ss_pred hCCCCccCCEEEEcCCcCCCCCCCcchhhhcccccc
Q 002615 310 KLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSF 345 (900)
Q Consensus 310 ~l~~~~~P~~~~~v~~lP~t~~GKidr~~L~~~~~~ 345 (900)
+|+.+++|..|+++++||+|++|||+|++|++....
T Consensus 570 ~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 605 (629)
T PRK10524 570 QLGAVARPARVWFVSALPKTRSGKLLRRAIQAIAEG 605 (629)
T ss_pred hcCCCcCCCEEEEcCCCCCCCCcchHHHHHHHHHcC
Confidence 999999999999999999999999999999987653
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=391.11 Aligned_cols=306 Identities=21% Similarity=0.293 Sum_probs=260.9
Q ss_pred CCcEEEEccCcchHhHHHH-HHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhccCCCC
Q 002615 9 GEELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHV 87 (900)
Q Consensus 9 ~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~ 87 (900)
.+++++..+|++|..++.. ++.++..|+++++.+ .+++..+++.|+++++|++.++|++++.+.+..... ...+
T Consensus 243 ~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-~~~~ 317 (560)
T PLN02574 243 SDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMR----RFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGV-CGEV 317 (560)
T ss_pred CCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEec----CCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCcccc-ccCc
Confidence 5688999999999998865 667778899999886 578999999999999999999999999998754321 1234
Q ss_pred CCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEEEEecC
Q 002615 88 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVES 167 (900)
Q Consensus 88 ~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~ 167 (900)
+++||.+++||+++++++++.+.+.++++.+++.||+||+++.++...... ......++|+|+++++++|+|+
T Consensus 318 ~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-------~~~~~~~vG~~~~~~~v~i~d~ 390 (560)
T PLN02574 318 LKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTE-------KLSKYSSVGLLAPNMQAKVVDW 390 (560)
T ss_pred cccceEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCcc-------ccCCCCceeeeCCCcEEEEEeC
Confidence 789999999999999999999999998899999999999986544211100 1123568999999999999984
Q ss_pred C-C---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcccCCc
Q 002615 168 D-T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 243 (900)
Q Consensus 168 ~-~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ 243 (900)
+ + +.++.|||+|+|++++.||+++++.+++.|. .++||+|||+|+++++|.++++||+||+
T Consensus 391 ~~g~~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~---------------~~g~~~TGDlg~~~~~G~l~i~GR~~d~ 455 (560)
T PLN02574 391 STGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTID---------------KDGWLRTGDIAYFDEDGYLYIVDRLKEI 455 (560)
T ss_pred CCCcCCCCCCCeEEEEECcchhhhhcCChhHhhhhcc---------------CCCCcccceEEEEECCCeEEEEecchhh
Confidence 3 3 3567899999999999999999999887763 2689999999999999999999999999
Q ss_pred EEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCEEEEc
Q 002615 244 IKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFM 323 (900)
Q Consensus 244 ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~~~~v 323 (900)
||++|++|+|.|||++|.+||.|.+++|++.+++..++.++++++.++..... .++|+++++++|+.|+.|..++++
T Consensus 456 i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~v~~v 532 (560)
T PLN02574 456 IKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGSTLS---QEAVINYVAKQVAPYKKVRKVVFV 532 (560)
T ss_pred eEECCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCCCCC---HHHHHHHHHHhccCcccCcEEEEe
Confidence 99999999999999999999999999999988877777888998876543322 368999999999999999999999
Q ss_pred CCcCCCCCCCcchhhhccccc
Q 002615 324 DSLPMTSSGKVDYASLSASTS 344 (900)
Q Consensus 324 ~~lP~t~~GKidr~~L~~~~~ 344 (900)
++||+|++|||+|++|++...
T Consensus 533 ~~iP~t~~GKi~r~~L~~~~~ 553 (560)
T PLN02574 533 QSIPKSPAGKILRRELKRSLT 553 (560)
T ss_pred eccCCCCcchhhHHHHHHHHh
Confidence 999999999999999987654
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=366.47 Aligned_cols=323 Identities=24% Similarity=0.323 Sum_probs=281.4
Q ss_pred CccCCCCCCcEEEEccCcchHhHHHH-HHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHh
Q 002615 2 QDLYPLHGEELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQ 80 (900)
Q Consensus 2 ~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~ 80 (900)
...|++.++|++.+.+-+.++.+.+. .+.+|++|+|+++.+.. +.++..+++.+.+++||++.+.|++++.+.....
T Consensus 273 ~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~--p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~ 350 (626)
T KOG1175|consen 273 RYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGP--PFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQ 350 (626)
T ss_pred ceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCC--CCChhhhhhhHhhcceEEEEeccHHHHHHHHhcc
Confidence 45789999999999999999988866 67799999999998643 3399999999999999999999999998887665
Q ss_pred hccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCc
Q 002615 81 SQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNC 160 (900)
Q Consensus 81 ~~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~ 160 (900)
+.......++||.+.+.|||+.++.+..+.+.+....|++.||+||+|.+++....... ...+...+.|.+++
T Consensus 351 ~~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~-------p~~pg~~~~p~~g~ 423 (626)
T KOG1175|consen 351 EDVTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTETGGICITPKPGKL-------PIKPGSAGKPFPGY 423 (626)
T ss_pred ccccccccceEEEEeecCccCCcchHHHHHHhcCccchhhceeeeccCceeeeccCCCC-------CcCccccCCCCCCc
Confidence 55444444789999999999999999999998833369999999999998875433221 23677899999999
Q ss_pred EEEEecCCCC--CC--CccEEEEccc---cccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCc
Q 002615 161 DIVLVESDTV--KP--DEGEIYAGGL---CLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGD 233 (900)
Q Consensus 161 ~~~i~d~~~~--~~--~~GEl~v~g~---~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~ 233 (900)
.+.|+|+++. ++ +.|||++..+ +.+++|+++++ +|...... .-.++|.|||.+++|+||+
T Consensus 424 ~v~i~de~g~~~~~~~~~G~l~~~~~~P~~~~r~~~~n~e----rf~~~yf~---------k~pg~y~tGD~~~rd~dGY 490 (626)
T KOG1175|consen 424 DVQILDENGNELPPSTGNGELRLKPPWPPGMFRTLWGNHE----RFRAAYFK---------KFPGYYFTGDGGRRDEDGY 490 (626)
T ss_pred ceEEECCCCCCcCCCCceeEEEEeCCCCccccccccCCHH----Hhhhhhcc---------cCCceEEecCceEEcCCce
Confidence 9999998663 22 6799999874 78999999987 33332221 1368999999999999999
Q ss_pred EEEEcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCC
Q 002615 234 LVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPL 313 (900)
Q Consensus 234 l~~~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~ 313 (900)
++++||.||+|+++|+|+.+.|||+++.+||.|.|++|++.+++..++.++|||+++++....+.+.++|++++++.+.+
T Consensus 491 ~~i~GR~DDviNvsGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~~~~~~L~kel~~~VR~~igp 570 (626)
T KOG1175|consen 491 YWILGRVDDVINVSGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGSHDPEQLTKELVKHVRSVIGP 570 (626)
T ss_pred EEEEecccccccccceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCCCChHHHHHHHHHHHHhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred CccCCEEEEcCCcCCCCCCCcchhhhccccccc
Q 002615 314 AMIPNRFVFMDSLPMTSSGKVDYASLSASTSFT 346 (900)
Q Consensus 314 ~~~P~~~~~v~~lP~t~~GKidr~~L~~~~~~~ 346 (900)
+..|+.|++++.||+|.+|||.|++|++.....
T Consensus 571 ~a~P~~I~~v~~LPkTrSGKimRr~lrki~~g~ 603 (626)
T KOG1175|consen 571 YAVPRLIVFVPGLPKTRSGKIMRRALRKIASGK 603 (626)
T ss_pred ccccceeEecCCCCccccchhHHHHHHHHhccC
Confidence 999999999999999999999999999987765
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-41 Score=386.16 Aligned_cols=303 Identities=23% Similarity=0.299 Sum_probs=258.5
Q ss_pred cCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhcc
Q 002615 4 LYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQH 83 (900)
Q Consensus 4 ~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~ 83 (900)
.+++.++|+++..+|++|..++..++.++..|+++++.+ .+++..+++.|+++++|++.++|++++.+++......
T Consensus 231 ~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~g~~~~~~~----~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~ 306 (537)
T PRK13382 231 RTPWRAEEPTVIVAPMFHAWGFSQLVLAASLACTIVTRR----RFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVR 306 (537)
T ss_pred hhCCCCCCeEEEecChHhhhHHHHHHHHHhcCcEEEECC----CcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhc
Confidence 467788999999999999999988999999999999875 6789999999999999999999999999886543222
Q ss_pred CCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEEE
Q 002615 84 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 163 (900)
Q Consensus 84 ~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 163 (900)
...++++||.+++|||++++++++.|.+.+ +..++|.||+||++.+++..... ......++|+|++++.++
T Consensus 307 ~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~--------~~~~~~~vG~p~~~~~~~ 377 (537)
T PRK13382 307 NRYSGRSLRFAAASGSRMRPDVVIAFMDQF-GDVIYNNYNATEAGMIATATPAD--------LRAAPDTAGRPAEGTEIR 377 (537)
T ss_pred ccCCccceeEEEEcCCCCCHHHHHHHHHHc-CCcEEecccccccCcceecChhH--------hccCCCCccccCcCcEEE
Confidence 223356899999999999999999999988 56799999999998765532210 112456899999999999
Q ss_pred EecCCCC---CCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEccc
Q 002615 164 LVESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 240 (900)
Q Consensus 164 i~d~~~~---~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 240 (900)
++|+++. .++.|||+++|++++.||+ ++.+.. | .++||+|||+++++++|+++|+||+
T Consensus 378 i~d~~~~~~~~g~~GEl~v~g~~~~~gY~--~~~~~~-~----------------~~g~~~TGDl~~~~~~g~l~~~GR~ 438 (537)
T PRK13382 378 ILDQDFREVPTGEVGTIFVRNDTQFDGYT--SGSTKD-F----------------HDGFMASGDVGYLDENGRLFVVGRD 438 (537)
T ss_pred EECCCCCCCCCCCeeEEEEEcCCcccCcc--ccchhh-c----------------cCCCEeeCceEEEeCCCcEEEeccc
Confidence 9987663 4567999999999999998 444332 2 2579999999999999999999999
Q ss_pred CCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCEE
Q 002615 241 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 320 (900)
Q Consensus 241 dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~~ 320 (900)
||+||++|++|+|.|||..|.+||+|.+++|++.++...++.+++++++.+... ...++++++++++|+.|++|..+
T Consensus 439 dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~---~~~~~l~~~l~~~l~~~~~P~~i 515 (537)
T PRK13382 439 DEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGAS---ATPETLKQHVRDNLANYKVPRDI 515 (537)
T ss_pred cceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCC---CCHHHHHHHHHHhccCCCCCcEE
Confidence 999999999999999999999999999999999888766778899998865432 22468999999999999999999
Q ss_pred EEcCCcCCCCCCCcchhhhcc
Q 002615 321 VFMDSLPMTSSGKVDYASLSA 341 (900)
Q Consensus 321 ~~v~~lP~t~~GKidr~~L~~ 341 (900)
++++++|+|++||++|++|++
T Consensus 516 ~~v~~lP~t~~gK~~r~~L~~ 536 (537)
T PRK13382 516 VVLDELPRGATGKILRRELQA 536 (537)
T ss_pred EEeccCCCCCCCCCcHHhhCC
Confidence 999999999999999999874
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=386.90 Aligned_cols=316 Identities=18% Similarity=0.206 Sum_probs=241.9
Q ss_pred ccCCCC-CCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 3 DLYPLH-GEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~-~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
+.++++ ++|++++++|++|++++..++.+++.|+++++.+......+|..+++.++++++|++..+|.++..+......
T Consensus 186 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~ 265 (525)
T PRK05851 186 ARVGLDAATDVGCSWLPLYHDMGLAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARR 265 (525)
T ss_pred HHhCCCCCCCeEEEcCCCccCccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhcc
Confidence 356787 8999999999999999998999999999999985433445788999999999999886655555554432221
Q ss_pred ccCCCCCCCcCEEEEeccCCChhhHHHHHhhC-----CCceEEeecCccccccccceecccCCcc---cc--c-cCCCCc
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLF-----PNISILNLYGSTEVSGDCTYFDCKRLPS---IL--E-MSTLKS 150 (900)
Q Consensus 82 ~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~-----~~~~l~~~YG~TE~~~~~~~~~~~~~~~---~~--~-~~~~~~ 150 (900)
.....+++||.+++|||++++++.+.|.+.+ +..+++|.||+||+++.++......... .. . ......
T Consensus 266 -~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (525)
T PRK05851 266 -VSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRH 344 (525)
T ss_pred -ccCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCccccee
Confidence 1123468999999999999999999888742 2346999999999987655422110000 00 0 011234
Q ss_pred ceeeeccCCcEEEEecCCC----CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceE
Q 002615 151 VPIGLPISNCDIVLVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFA 226 (900)
Q Consensus 151 ~~~G~p~~~~~~~i~d~~~----~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~ 226 (900)
.++|+|+++++++|+|+++ +.++.|||+|+|++++.||+++|+.+ .++||+|||+|
T Consensus 345 ~~vG~p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~GY~~~~~~~--------------------~~~~~~TGDl~ 404 (525)
T PRK05851 345 AVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAPID--------------------PDDWFPTGDLG 404 (525)
T ss_pred eeecCCCCCcEEEEECCCCCccCCCCCeEEEEEecCchhhccccCCccC--------------------CCCceeccceE
Confidence 6799999999999998664 23567999999999999999988532 25799999999
Q ss_pred EEccCCcEEEEcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHH
Q 002615 227 RRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSW 306 (900)
Q Consensus 227 ~~~~~G~l~~~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~ 306 (900)
+++ +|.|+|+||+||+||++|+||+|.|||++|.+||.|.+++|++.++...++...++++........ ++++++
T Consensus 405 ~~~-~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~ 479 (525)
T PRK05851 405 YLV-DGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEFRGPDE----AGARSE 479 (525)
T ss_pred EEE-CCEEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEEEEEEecCcch----HHHHHH
Confidence 986 799999999999999999999999999999999999999999887665555555555443221122 234455
Q ss_pred HHhhCCCC--ccCCEEEEcC--CcCCCCCCCcchhhhccccc
Q 002615 307 VSSKLPLA--MIPNRFVFMD--SLPMTSSGKVDYASLSASTS 344 (900)
Q Consensus 307 l~~~l~~~--~~P~~~~~v~--~lP~t~~GKidr~~L~~~~~ 344 (900)
++++|+.+ ++|..+++++ +||+|++|||+|++|++..+
T Consensus 480 ~~~~l~~~l~~~P~~~~~v~~~~lP~t~~GKi~r~~L~~~~~ 521 (525)
T PRK05851 480 VVQRVASECGVVPSDVVFVAPGSLPRTSSGKLRRLAVKRSLE 521 (525)
T ss_pred HHHHHHHHhCCCccEEEEECCCCcCcCcchHHHHHHHHHHHH
Confidence 55555555 8999999998 89999999999999986543
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=384.91 Aligned_cols=312 Identities=22% Similarity=0.312 Sum_probs=265.1
Q ss_pred cCCCCCCcEEEEccCcchHhHHHH-HHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 4 LYPLHGEELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 4 ~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
.++++++|+++..+|++|.+++.. ++.++..|+++++.+ ..++..+++.|+++++|++.++|+++..|++.....
T Consensus 218 ~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~ 293 (537)
T PLN02246 218 NLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMP----KFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVE 293 (537)
T ss_pred ccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeC----CCCHHHHHHHHHHhCceEEEcchHHHHHHhcCcccc
Confidence 578899999999999999999855 778899999999996 468899999999999999999999999887643322
Q ss_pred cCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEE
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 162 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 162 (900)
. ..++++|.+++||+++++++.+.+.+.++++.+++.||+||++.+++....... ........++|+|++++++
T Consensus 294 ~--~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~----~~~~~~~~~~G~~~~~~~~ 367 (537)
T PLN02246 294 K--YDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAK----EPFPVKSGSCGTVVRNAEL 367 (537)
T ss_pred c--cCccceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccccCcccccccccCC----CCccccCCccccccCCcEE
Confidence 1 336899999999999999999999999989999999999999876543211000 0011234578999999999
Q ss_pred EEecCCC----CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEc
Q 002615 163 VLVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 238 (900)
Q Consensus 163 ~i~d~~~----~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 238 (900)
+++|++. +.++.|||+++|+.++.||+++|+.+...|. .++||+|||+++++++|.++++|
T Consensus 368 ~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~---------------~~~~~~TGD~~~~~~~g~l~~~G 432 (537)
T PLN02246 368 KIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTID---------------KDGWLHTGDIGYIDDDDELFIVD 432 (537)
T ss_pred EEecCCCCCcCCCCCceEEEEECCchhccccCCchhhhhccc---------------CCCCeeecceEEEeCCCeEEEEe
Confidence 9998532 3566799999999999999999998877652 26799999999999999999999
Q ss_pred ccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCC
Q 002615 239 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 318 (900)
Q Consensus 239 R~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~ 318 (900)
|.||+||++|+||+|.+||+.|.+||.|.+++|++.++...+..++++++..+..... .++|+++++++|+.|++|.
T Consensus 433 R~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~ 509 (537)
T PLN02246 433 RLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSEIT---EDEIKQFVAKQVVFYKRIH 509 (537)
T ss_pred cccceEEECCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCCCCC---HHHHHHHHHhhCcCccccc
Confidence 9999999999999999999999999999999999988776667788888876553322 3689999999999999999
Q ss_pred EEEEcCCcCCCCCCCcchhhhcccc
Q 002615 319 RFVFMDSLPMTSSGKVDYASLSAST 343 (900)
Q Consensus 319 ~~~~v~~lP~t~~GKidr~~L~~~~ 343 (900)
.++++++||+|++||++|++|++.+
T Consensus 510 ~i~~~~~~P~t~~GKi~r~~L~~~~ 534 (537)
T PLN02246 510 KVFFVDSIPKAPSGKILRKDLRAKL 534 (537)
T ss_pred eEEEeccCCCCCcchhhHHHHHHHH
Confidence 9999999999999999999998754
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=380.05 Aligned_cols=310 Identities=19% Similarity=0.217 Sum_probs=261.2
Q ss_pred cCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhcc
Q 002615 4 LYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQH 83 (900)
Q Consensus 4 ~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~ 83 (900)
.++++++|+++..+|++|..++...+..+..|+++++.+ ..++..+++.|+++++|++.++|+++..+........
T Consensus 189 ~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 264 (501)
T PRK13390 189 FYDISESDIYYSSAPIYHAAPLRWCSMVHALGGTVVLAK----RFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVR 264 (501)
T ss_pred HhCCCCCCeEEecccchhhhHHHHHHHHHhcCceEEEcC----CcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhc
Confidence 467889999999999999999876666778899999886 5689999999999999999999999998876432211
Q ss_pred CCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEEE
Q 002615 84 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 163 (900)
Q Consensus 84 ~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 163 (900)
....++++|.++.||+++++++.+.+.+.+ +..+++.||+||+++++.... .. ......++|+|+++ .++
T Consensus 265 ~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~-~~-------~~~~~~~~G~~~~g-~~~ 334 (501)
T PRK13390 265 TRYDVSSLRAVIHAAAPCPVDVKHAMIDWL-GPIVYEYYSSTEAHGMTFIDS-PD-------WLAHPGSVGRSVLG-DLH 334 (501)
T ss_pred ccCChhhhheEEEcCCCCCHHHHHHHHHhc-CCceeeeecccccCceEEecc-hh-------hccCCCCcCCcccc-eEE
Confidence 223467999999999999999999998877 678999999999986443211 10 01134578999999 689
Q ss_pred EecCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEccc
Q 002615 164 LVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 240 (900)
Q Consensus 164 i~d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 240 (900)
++|+++ ++++.|||+|+|+.++.||+++|+.+.+.|.. ..++||+|||+|++++||.+++.||.
T Consensus 335 i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~-------------~~~~w~~tGDl~~~~~dg~l~~~gR~ 401 (501)
T PRK13390 335 ICDDDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHP-------------AHPFWTTVGDLGSVDEDGYLYLADRK 401 (501)
T ss_pred EECCCCCCCCCCCceEEEEecCCccccccCChhhhHHhhcc-------------CCCceEEcCceEEECCCCeEEEeecc
Confidence 998766 35678999999999999999999998877632 12579999999999999999999999
Q ss_pred CCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCEE
Q 002615 241 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 320 (900)
Q Consensus 241 dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~~ 320 (900)
|++||++|+||+|.|||++|.+||.|.+++|++.++...++.+++++++.......+...++|+++++++||.|++|..+
T Consensus 402 ~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~ 481 (501)
T PRK13390 402 SFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSDELARELIDYTRSRIAHYKAPRSV 481 (501)
T ss_pred ccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCCcchhhHHHHHHHHHHhcccCCCCcEE
Confidence 99999999999999999999999999999999998877777888888877654333344578999999999999999999
Q ss_pred EEcCCcCCCCCCCcchhhhc
Q 002615 321 VFMDSLPMTSSGKVDYASLS 340 (900)
Q Consensus 321 ~~v~~lP~t~~GKidr~~L~ 340 (900)
+++++||+|++|||+|++|+
T Consensus 482 ~~~~~iP~t~~GKi~r~~L~ 501 (501)
T PRK13390 482 EFVDELPRTPTGKLVKGLLR 501 (501)
T ss_pred EEeccCCCCCccceehhhcC
Confidence 99999999999999999984
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=380.33 Aligned_cols=308 Identities=19% Similarity=0.290 Sum_probs=262.8
Q ss_pred ccCCCCCCcEEEEccCcchHhHH-HHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHL-QEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
+.+++.++|++++.+|++|..++ ..++.++..|+++++.+ ..++..+++.++++++|++.++|+++..+......
T Consensus 231 ~~~~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~----~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~ 306 (547)
T PRK13295 231 ERLGLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQD----IWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKE 306 (547)
T ss_pred HHhCCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCC----CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccc
Confidence 35678899999999999999876 55899999999999986 56899999999999999999999999998875433
Q ss_pred ccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcE
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161 (900)
Q Consensus 82 ~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 161 (900)
. ...+++||.+++|||++++.+.+.+.+.+ +++++|.||+||++.+++...... ......++|+|++++.
T Consensus 307 ~--~~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~-------~~~~~~~~G~~~~~~~ 376 (547)
T PRK13295 307 S--GRPVSSLRTFLCAGAPIPGALVERARAAL-GAKIVSAWGMTENGAVTLTKLDDP-------DERASTTDGCPLPGVE 376 (547)
T ss_pred c--CCCcccceEEEEecCCCCHHHHHHHHHHh-CCCeEEeccCCCCCCeeeccCCCc-------chhccCccccccCCcE
Confidence 2 23468999999999999999999999988 889999999999986544321110 0113457899999999
Q ss_pred EEEecCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEc
Q 002615 162 IVLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 238 (900)
Q Consensus 162 ~~i~d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 238 (900)
++|+|+++ +.++.|||+|+|++++.||+++|+.+... .++||+|||+|+++++|.+++.|
T Consensus 377 v~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~-----------------~~g~~~TGD~~~~~~~g~l~~~g 439 (547)
T PRK13295 377 VRVVDADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGTD-----------------ADGWFDTGDLARIDADGYIRISG 439 (547)
T ss_pred EEEECCCCCCCCCCCCCeEEEEcCcccccccCCccccccC-----------------CCCCeecceEEEEcCCceEEEEe
Confidence 99998766 34667999999999999999999887643 14699999999999999999999
Q ss_pred ccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHh-hCCCCccC
Q 002615 239 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSS-KLPLAMIP 317 (900)
Q Consensus 239 R~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~P 317 (900)
|.||+||++|++|+|.+||++|.+++.|.+++|++.++...++.+++++++.+..... .+++++++++ .|+.|++|
T Consensus 440 R~~~~i~~~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~---~~~l~~~~~~~~l~~~~~P 516 (547)
T PRK13295 440 RSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSLD---FEEMVEFLKAQKVAKQYIP 516 (547)
T ss_pred ccCCeEEECCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCCCC---HHHHHHHHHhccCccccCC
Confidence 9999999999999999999999999999999999988877777889999887653222 3578888886 79999999
Q ss_pred CEEEEcCCcCCCCCCCcchhhhccccc
Q 002615 318 NRFVFMDSLPMTSSGKVDYASLSASTS 344 (900)
Q Consensus 318 ~~~~~v~~lP~t~~GKidr~~L~~~~~ 344 (900)
..++++++||+|++||++|++|+++..
T Consensus 517 ~~i~~v~~lP~t~sgK~~r~~L~~~~~ 543 (547)
T PRK13295 517 ERLVVRDALPRTPSGKIQKFRLREMLR 543 (547)
T ss_pred cEEEEeccCCCCCCccccHHHHHHHHh
Confidence 999999999999999999999987553
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=384.60 Aligned_cols=311 Identities=20% Similarity=0.329 Sum_probs=265.1
Q ss_pred ccCCCCCCcEEEEccCcchHhHHH-HHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQ-EFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
+.+++.++|++++.+|++|..++. .++.++..|+++++.+ ..++..+++.++++++|++.++|++++.++.....
T Consensus 224 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~----~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~ 299 (546)
T PRK08314 224 LWSNSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMP----RWDREAAARLIERYRVTHWTNIPTMVVDFLASPGL 299 (546)
T ss_pred HhhCCCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecC----CCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCc
Confidence 356788999999999999999974 4889999999999996 46888999999999999999999999988754321
Q ss_pred ccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcE
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161 (900)
Q Consensus 82 ~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 161 (900)
....++++|.+++|||++++++++.+.+.+ +.++++.||+||++..++..... .....++|+|+++++
T Consensus 300 --~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~---------~~~~~~~G~~~~g~~ 367 (546)
T PRK08314 300 --AERDLSSLRYIGGGGAAMPEAVAERLKELT-GLDYVEGYGLTETMAQTHSNPPD---------RPKLQCLGIPTFGVD 367 (546)
T ss_pred --cccCchhhheeeeccccCCHHHHHHHHHHc-CCcEEecccccccccceecCCCc---------CCCCCccCcccCCeE
Confidence 123467899999999999999999999988 68999999999998655432211 113467999999999
Q ss_pred EEEecCCC----CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEE
Q 002615 162 IVLVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFL 237 (900)
Q Consensus 162 ~~i~d~~~----~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~ 237 (900)
++++|++. +.+..|||+|+|+.++.||+++++.+.+.|... ++.+||+|||+|+++++|.++++
T Consensus 368 ~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~------------~~~~~~~TGDl~~~~~~g~l~~~ 435 (546)
T PRK08314 368 ARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEI------------DGKRFFRTGDLGRMDEEGYFFIT 435 (546)
T ss_pred EEEEeCCCCcCCCCCCceEEEEECCchhccccCChhHhhhhhhhc------------CCCceEecCCEEEEcCCCcEEEE
Confidence 99998543 346679999999999999999999888877542 13579999999999999999999
Q ss_pred cccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccC
Q 002615 238 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP 317 (900)
Q Consensus 238 GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P 317 (900)
||+||+||++|+||+|.|||++|.++|+|.+++|++.++...++.+++++++++..... ...++++++++++|+.|++|
T Consensus 436 GR~~d~i~~~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~-~~~~~l~~~~~~~l~~~~~P 514 (546)
T PRK08314 436 DRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGK-TTEEEIIAWAREHMAAYKYP 514 (546)
T ss_pred ecchhhEEeCCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCCCCC-CCHHHHHHHHHHhcccCCCC
Confidence 99999999999999999999999999999999999988877778899999987653211 22368999999999999999
Q ss_pred CEEEEcCCcCCCCCCCcchhhhccc
Q 002615 318 NRFVFMDSLPMTSSGKVDYASLSAS 342 (900)
Q Consensus 318 ~~~~~v~~lP~t~~GKidr~~L~~~ 342 (900)
..++++++||+|++||++|++|++.
T Consensus 515 ~~~~~v~~iP~t~~GKv~r~~L~~~ 539 (546)
T PRK08314 515 RIVEFVDSLPKSGSGKILWRQLQEQ 539 (546)
T ss_pred cEEEEecCCCCCCccceeHHHHHHH
Confidence 9999999999999999999999754
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=392.94 Aligned_cols=313 Identities=17% Similarity=0.193 Sum_probs=252.1
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
..+++.++|++++.+|++|.+++..++.+|+.|+++++.+ .++..+++.|+++++|+++++|++++.+.......
T Consensus 255 ~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~-----~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~ 329 (651)
T PLN02736 255 LSTKFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQ-----GDNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNA 329 (651)
T ss_pred hccCCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeC-----CCHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHH
Confidence 4568889999999999999999988899999999999874 36788999999999999999999998886542110
Q ss_pred c--------------------------CC--------------CCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeec
Q 002615 83 H--------------------------NM--------------HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLY 122 (900)
Q Consensus 83 ~--------------------------~~--------------~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~Y 122 (900)
. .. ...++||.+++||+++++++.+.+.+.+ ++.+++.|
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~-g~~~~~~Y 408 (651)
T PLN02736 330 VKESGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICF-GGRVLEGY 408 (651)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHh-CCCeEEEe
Confidence 0 00 0014899999999999999999998877 68899999
Q ss_pred CccccccccceecccCCccccccCCCCcceeeeccCCcEEEEecCC-------CCCCCccEEEEccccccccccCCCCCC
Q 002615 123 GSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD-------TVKPDEGEIYAGGLCLSNGYFSESTFM 195 (900)
Q Consensus 123 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-------~~~~~~GEl~v~g~~~~~gY~~~~~~~ 195 (900)
|+||+++.++..... .....++|+|+++++++|+|.+ +.+++.|||+|+|++++.||+++|+.|
T Consensus 409 G~TE~~~~~~~~~~~---------~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t 479 (651)
T PLN02736 409 GMTETSCVISGMDEG---------DNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQT 479 (651)
T ss_pred chHHhchheeccCCC---------CCCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHH
Confidence 999998765533211 1245679999999999999732 233456999999999999999999999
Q ss_pred ccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcccCCcEEE-CceeeChHHHHHHHhCCCCeeEEEEEEe
Q 002615 196 PSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKI-NGQRMALEEIEHTLRGHPDVVDTAVVSH 274 (900)
Q Consensus 196 ~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~rv~~~~iE~~l~~~~~v~~~~v~~~ 274 (900)
++.|. .++||+|||+|++++||+|+|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.
T Consensus 480 ~~~~~---------------~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~ 544 (651)
T PLN02736 480 REVID---------------EDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGD 544 (651)
T ss_pred Hhhhc---------------cCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEec
Confidence 88773 2689999999999999999999999999998 7999999999999999999999999984
Q ss_pred ecCCceEEEEEEEEecCCC---------Cc---------hHHHHHHHHHHHH-----hhCCCCccCCEEEEcCCcC----
Q 002615 275 KHQGELVILVAFIVLKEKK---------TS---------SEIFLSSIKSWVS-----SKLPLAMIPNRFVFMDSLP---- 327 (900)
Q Consensus 275 ~~~~~~~~l~~~v~~~~~~---------~~---------~~~~~~~l~~~l~-----~~l~~~~~P~~~~~v~~lP---- 327 (900)
. .+..++|+|+++... .. .+...+.|.+.++ ..|+.|++|++|+++++.|
T Consensus 545 ~---~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 621 (651)
T PLN02736 545 S---LNSSLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVEN 621 (651)
T ss_pred C---CCceeEEEEEeCHHHHHHHHHHcCCCccCHHHHhcCHHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCC
Confidence 2 244789999986421 00 0111122222222 2599999999999999886
Q ss_pred --CCCCCCcchhhhccccccccc
Q 002615 328 --MTSSGKVDYASLSASTSFTIS 348 (900)
Q Consensus 328 --~t~~GKidr~~L~~~~~~~~~ 348 (900)
+|++|||+|+++++.|+..++
T Consensus 622 ~~lT~~~Ki~R~~i~~~~~~~i~ 644 (651)
T PLN02736 622 GLLTPTFKVKRPQAKAYFAKAIS 644 (651)
T ss_pred CcCChhhhhhHHHHHHHHHHHHH
Confidence 799999999999987765544
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=376.93 Aligned_cols=302 Identities=20% Similarity=0.265 Sum_probs=260.1
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
+.+++.++|+++...|++|+.++..++.++..|+++++.+ ..++..+++.++++++|++.++|++++.+.+...
T Consensus 177 ~~~~~~~~d~~~~~~~l~~~~~l~~~~~~l~~g~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-- 250 (487)
T PRK07638 177 HDFHMKREDSVLIAGTLVHSLFLYGAISTLYVGQTVHLMR----KFIPNQVLDKLETENISVMYTVPTMLESLYKENR-- 250 (487)
T ss_pred HhcCcCCCCEEEEeecchHHHHHHHHHHHHccCcEEEEcC----CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC--
Confidence 4578899999999999999999989999999999999986 5789999999999999999999999999886521
Q ss_pred cCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEE
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 162 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 162 (900)
. ..+.+.++++|+++++.+.+++.+.+|++++++.||+||++.++.... . .......++|+|++++.+
T Consensus 251 ---~-~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~-~-------~~~~~~~~~G~~~~~~~~ 318 (487)
T PRK07638 251 ---V-IENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVD-E-------ESERRPNSVGRPFHNVQV 318 (487)
T ss_pred ---c-CCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecc-c-------ccCCCCCCCCcccCCcEE
Confidence 1 345667788999999999999999999999999999999987654322 1 112245689999999999
Q ss_pred EEecCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcc
Q 002615 163 VLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 239 (900)
Q Consensus 163 ~i~d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 239 (900)
+|+|+++ ++++.|||+++|+.++.||+++++.+.+.+ .++||+|||+++++++|+++++||
T Consensus 319 ~i~d~~g~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~----------------~~g~~~TGDl~~~d~~g~l~i~GR 382 (487)
T PRK07638 319 RICNEAGEEVQKGEIGTVYVKSPQFFMGYIIGGVLARELN----------------ADGWMTVRDVGYEDEEGFIYIVGR 382 (487)
T ss_pred EEECCCCCCCCCCCCeEEEEecccceeeecCCHHHHhhhc----------------cCCcEecCccEeEcCCCeEEEEec
Confidence 9998766 356679999999999999999887655432 368999999999999999999999
Q ss_pred cCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCE
Q 002615 240 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 319 (900)
Q Consensus 240 ~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~ 319 (900)
+||+||++|++|+|.|||++|.+||.|.+++|++..++..+..++++++.. ...+++++++++.|+.|++|..
T Consensus 383 ~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~-------~~~~~l~~~~~~~l~~~~~p~~ 455 (487)
T PRK07638 383 EKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGS-------ATKQQLKSFCLQRLSSFKIPKE 455 (487)
T ss_pred CCCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEECC-------CCHHHHHHHHHHHhhcccCCcE
Confidence 999999999999999999999999999999999988776666778877642 2246899999999999999999
Q ss_pred EEEcCCcCCCCCCCcchhhhcccccc
Q 002615 320 FVFMDSLPMTSSGKVDYASLSASTSF 345 (900)
Q Consensus 320 ~~~v~~lP~t~~GKidr~~L~~~~~~ 345 (900)
++++++||+|++||++|++|++++..
T Consensus 456 i~~v~~iP~t~~GKv~r~~L~~~~~~ 481 (487)
T PRK07638 456 WHFVDEIPYTNSGKIARMEAKSWIEN 481 (487)
T ss_pred EEEecccCCCCcccccHHHHHHHHhc
Confidence 99999999999999999999876543
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-40 Score=375.68 Aligned_cols=306 Identities=20% Similarity=0.276 Sum_probs=263.8
Q ss_pred cCCCCCCcEEEEccCcchHhHHHH-HHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 4 LYPLHGEELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 4 ~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
.++++++|+++..+|++|..++.. ++.++..|+++++++ ..++..+++.++++++|++.++|++++.++......
T Consensus 184 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 259 (496)
T PRK06839 184 AIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPR----KFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFE 259 (496)
T ss_pred HcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEcc----CCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccc
Confidence 457889999999999999988755 678899999999885 578999999999999999999999999998754322
Q ss_pred cCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEE
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 162 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 162 (900)
..+++++|.+++||+++++++.+.+.+. ++++++.||+||++..++...... ......++|+|++++.+
T Consensus 260 --~~~~~~lr~~~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE~~~~~~~~~~~~-------~~~~~~~~G~p~~~~~~ 328 (496)
T PRK06839 260 --TTNLQSVRWFYNGGAPCPEELMREFIDR--GFLFGQGFGMTETSPTVFMLSEED-------ARRKVGSIGKPVLFCDY 328 (496)
T ss_pred --cCCCcccceEEECCCCCCHHHHHHHHHh--CCeeEeeccCCCCCcceEeccccc-------ccccCCCCcccCCCceE
Confidence 2347899999999999999999999886 789999999999986544322111 11245679999999999
Q ss_pred EEecCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcc
Q 002615 163 VLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 239 (900)
Q Consensus 163 ~i~d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 239 (900)
+|+|+++ +.++.|||+|+|+.++.||+++++.+...| .++||+|||+++++++|.++++||
T Consensus 329 ~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~----------------~~g~~~TGDl~~~~~~g~~~~~GR 392 (496)
T PRK06839 329 ELIDENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETI----------------QDGWLCTGDLARVDEDGFVYIVGR 392 (496)
T ss_pred EEECCCcCCCCCCCceEEEEECCCcchhhcCChHHHHHHH----------------cCCCeeecceEEEcCCCcEEEecc
Confidence 9998766 346679999999999999999998877665 257999999999999999999999
Q ss_pred cCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCE
Q 002615 240 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 319 (900)
Q Consensus 240 ~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~ 319 (900)
.||+||.+|++|+|.+||++|.++|.|.+++|++.++...+..+++++++++..... .++|++++++.|+.+++|..
T Consensus 393 ~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~P~~ 469 (496)
T PRK06839 393 KKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLI---EKDVIEHCRLFLAKYKIPKE 469 (496)
T ss_pred ccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCC---HHHHHHHHHhhCcCCCCCcE
Confidence 999999999999999999999999999999999998887777899999987654332 36899999999999999999
Q ss_pred EEEcCCcCCCCCCCcchhhhcccc
Q 002615 320 FVFMDSLPMTSSGKVDYASLSAST 343 (900)
Q Consensus 320 ~~~v~~lP~t~~GKidr~~L~~~~ 343 (900)
+++++++|+|++||++|++|+++.
T Consensus 470 ~~~v~~~P~t~~GKi~r~~l~~~~ 493 (496)
T PRK06839 470 IVFLKELPKNATGKIQKAQLVNQL 493 (496)
T ss_pred EEEeccCCCCccccccHHHHHHHh
Confidence 999999999999999999998654
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=368.90 Aligned_cols=294 Identities=20% Similarity=0.240 Sum_probs=240.8
Q ss_pred cCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhcc
Q 002615 4 LYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQH 83 (900)
Q Consensus 4 ~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~ 83 (900)
.+++.+ ++.+.++|++|.+++..++.+|+.|+++++.+... +.........+++|++.++|++++.+++..
T Consensus 155 ~~~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~----~~~~~~~~~~~~~t~~~~vP~~l~~l~~~~---- 225 (452)
T PRK07445 155 YFQLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKR----LKSGQELPPNPSDFFLSLVPTQLQRLLQLR---- 225 (452)
T ss_pred HhcCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHh----ccchhhhhhhcCceEEEehHHHHHHHHhhC----
Confidence 355654 46788999999999988999999999999985221 111223335788999999999999987631
Q ss_pred CCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEEE
Q 002615 84 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 163 (900)
Q Consensus 84 ~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 163 (900)
...+++||.+++||+++++++.+.+.+ + ++++++.||+||++..++...... ......++|+|+++++++
T Consensus 226 -~~~l~~l~~i~~gG~~l~~~~~~~~~~-~-~~~l~~~YG~TE~~~~~~~~~~~~-------~~~~~~~~G~~~p~~~v~ 295 (452)
T PRK07445 226 -PQWLAQFRTILLGGAPAWPSLLEQARQ-L-QLRLAPTYGMTETASQIATLKPDD-------FLAGNNSSGQVLPHAQIT 295 (452)
T ss_pred -hhhhhcceEEEECCccCCHHHHHHHHh-c-CCeEecCcchhhhcccccccCchh-------hccCCCcCCccCCCCeEE
Confidence 123679999999999999999988875 3 789999999999876543321110 011345789999999999
Q ss_pred EecCCCCCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcccCCc
Q 002615 164 LVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 243 (900)
Q Consensus 164 i~d~~~~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ 243 (900)
|+ .++.|||+|+|+.++.||++++.. .++||+|||+|++++||+++|.||+||+
T Consensus 296 i~-----~g~~Gel~v~g~~~~~gY~~~~~~---------------------~~g~~~TGDl~~~d~dG~l~~~GR~dd~ 349 (452)
T PRK07445 296 IP-----ANQTGNITIQAQSLALGYYPQILD---------------------SQGIFETDDLGYLDAQGYLHILGRNSQK 349 (452)
T ss_pred Ec-----CCCcceEEEeCCccchhhcCCccC---------------------CCCEEECCCEEEEcCCCCEEEEeecCCE
Confidence 97 346799999999999999975321 2579999999999999999999999999
Q ss_pred EEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCEEEEc
Q 002615 244 IKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFM 323 (900)
Q Consensus 244 ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~~~~v 323 (900)
||++|+||+|.|||++|.+||.|.+|+|++.+++..++.++++++.++... ..++++++++++|+.|++|..++++
T Consensus 350 I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~~~----~~~~l~~~~~~~L~~~~~P~~i~~v 425 (452)
T PRK07445 350 IITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDPSI----SLEELKTAIKDQLSPFKQPKHWIPV 425 (452)
T ss_pred EEECCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCCCC----CHHHHHHHHHHhCCcccCCeEEEEe
Confidence 999999999999999999999999999999988777778899998765432 2368999999999999999999999
Q ss_pred CCcCCCCCCCcchhhhccccccc
Q 002615 324 DSLPMTSSGKVDYASLSASTSFT 346 (900)
Q Consensus 324 ~~lP~t~~GKidr~~L~~~~~~~ 346 (900)
++||+|++||++|++|++++..+
T Consensus 426 ~~lP~t~~GKi~r~~L~~~~~~~ 448 (452)
T PRK07445 426 PQLPRNPQGKINRQQLQQIAVQR 448 (452)
T ss_pred cCCCCCCCcccCHHHHHHHHHHh
Confidence 99999999999999998876544
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=376.22 Aligned_cols=308 Identities=20% Similarity=0.280 Sum_probs=265.6
Q ss_pred cCCCCCCcEEEEccCcchHhHHHH-HHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 4 LYPLHGEELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 4 ~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
.+++..+|+++...|++|.+++.. .+.++..|+++++.+ ..++..+++.++++++|++.++|++++.++......
T Consensus 184 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~ 259 (497)
T PRK06145 184 ALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHR----EFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRD 259 (497)
T ss_pred hhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECC----cCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCcc
Confidence 467899999999999999988754 678899999999986 578999999999999999999999999988654322
Q ss_pred cCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEE
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 162 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 162 (900)
...+++||.+++|||++++.+++.+.+.|++..+++.||+||++..++...... ......++|+|++++++
T Consensus 260 --~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-------~~~~~~~~G~~~~~~~~ 330 (497)
T PRK06145 260 --RFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGR-------EIEKIGSTGRALAHVEI 330 (497)
T ss_pred --ccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCcc-------ccccCCCcccCCCCceE
Confidence 234678999999999999999999999998899999999999997665432211 01134578999999999
Q ss_pred EEecCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcc
Q 002615 163 VLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 239 (900)
Q Consensus 163 ~i~d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 239 (900)
+++++++ +.+..|||+++|+.++.||+++++.+.+.|. ++||+|||+++++++|+++++||
T Consensus 331 ~i~~~~~~~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~----------------~~~~~TGDl~~~~~~g~l~~~GR 394 (497)
T PRK06145 331 RIADGAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFY----------------GDWFRSGDVGYLDEEGFLYLTDR 394 (497)
T ss_pred EEECCCCCCCCCCCceEEEEECcchhhhhcCChHHHHHHHh----------------CCCeeccceEEEcCCCcEEEecc
Confidence 9998765 3456799999999999999999999888772 47999999999999999999999
Q ss_pred cCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCE
Q 002615 240 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 319 (900)
Q Consensus 240 ~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~ 319 (900)
+||+||++|++|+|.+||+.|.++|+|.+++|++..+...++.+++++++....... .++|+++++++|+.|++|..
T Consensus 395 ~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~ 471 (497)
T PRK06145 395 KKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLT---LEALDRHCRQRLASFKVPRQ 471 (497)
T ss_pred ccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCCCCC---HHHHHHHHHHhhhcCCCCCE
Confidence 999999999999999999999999999999999988876667788888886543222 36899999999999999999
Q ss_pred EEEcCCcCCCCCCCcchhhhcccc
Q 002615 320 FVFMDSLPMTSSGKVDYASLSAST 343 (900)
Q Consensus 320 ~~~v~~lP~t~~GKidr~~L~~~~ 343 (900)
++++++||+|++||++|++|+++.
T Consensus 472 i~~v~~iP~t~~GKi~r~~l~~~~ 495 (497)
T PRK06145 472 LKVRDELPRNPSGKVLKRVLRDEL 495 (497)
T ss_pred EEEeccCCCCCcccccHHHHHHHh
Confidence 999999999999999999998753
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=380.10 Aligned_cols=318 Identities=20% Similarity=0.312 Sum_probs=263.1
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHH-HHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
..+++.++|++++.+|++|..++.. ++.+++.|+++++++. ...++..+++.++++++|++.++|++++.+......
T Consensus 210 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~--~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 287 (534)
T PRK05852 210 TGYRLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPAR--GRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAAT 287 (534)
T ss_pred HHhCCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCC--cCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhccc
Confidence 3567889999999999999999865 7888899999888642 246788999999999999999999999999876543
Q ss_pred ccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcE
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161 (900)
Q Consensus 82 ~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 161 (900)
.......+++|.++++|+++++.+++.+.+.+ +.++++.||+||++..++......... ...........|+ .+++.
T Consensus 288 ~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~-~~~~~~~~g~~g~-~~g~~ 364 (534)
T PRK05852 288 EPSGRKPAALRFIRSCSAPLTAETAQALQTEF-AAPVVCAFGMTEATHQVTTTQIEGIGQ-TENPVVSTGLVGR-STGAQ 364 (534)
T ss_pred ccccccCCCeeEEEECCCCCCHHHHHHHHHHh-CCChhhccCccccchhhhcCCcccccc-ccCcccccccCCC-CCCCe
Confidence 22223467999999999999999999999988 789999999999987655332211000 0000112223343 68999
Q ss_pred EEEecCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEc
Q 002615 162 IVLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 238 (900)
Q Consensus 162 ~~i~d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 238 (900)
++++|+++ ++++.|||+|+|+.+++||+++++.+.+.| .++||+|||++++++||++++.|
T Consensus 365 ~~i~d~~g~~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~----------------~~g~~~TGD~~~~d~dG~l~~~g 428 (534)
T PRK05852 365 IRIVGSDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANF----------------TDGWLRTGDLGSLSAAGDLSIRG 428 (534)
T ss_pred EEEECCCCCCCCCCCceEEEEecCcccchhcCCcccchhhh----------------cCCCcccCceEEEeCCCcEEEEe
Confidence 99998776 346679999999999999999999998776 24799999999999999999999
Q ss_pred ccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCC
Q 002615 239 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 318 (900)
Q Consensus 239 R~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~ 318 (900)
|+||+||++|.+|+|.+||++|.++|.|.+|+|++.++...++.++++++.++.... ..++|.++++++||.+++|.
T Consensus 429 R~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~~---~~~~i~~~~~~~l~~~~~P~ 505 (534)
T PRK05852 429 RIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPP---TAEELVQFCRERLAAFEIPA 505 (534)
T ss_pred cchhhEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCCCC---CHHHHHHHHHHhcccccCCe
Confidence 999999999999999999999999999999999999887777788888887654322 23689999999999999999
Q ss_pred EEEEcCCcCCCCCCCcchhhhccccc
Q 002615 319 RFVFMDSLPMTSSGKVDYASLSASTS 344 (900)
Q Consensus 319 ~~~~v~~lP~t~~GKidr~~L~~~~~ 344 (900)
.++++++||+|++||++|++|++.+.
T Consensus 506 ~i~~v~~iP~t~~GKi~r~~L~~~~~ 531 (534)
T PRK05852 506 SFQEASGLPHTAKGSLDRRAVAEQFG 531 (534)
T ss_pred EEEEhhhcCCCCCccccHHHHHHHhc
Confidence 99999999999999999999987664
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=373.75 Aligned_cols=321 Identities=24% Similarity=0.398 Sum_probs=267.7
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
+.+++.++|+++...|++|+.++..++.+++.|+++++.+ .....++..+++.++++++|.+.++|++++.++.....
T Consensus 175 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~- 252 (502)
T TIGR01734 175 ADFPLSEGKQFLNQAPFSFDLSVMDLYPCLASGGTLHCLD-KDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNF- 252 (502)
T ss_pred HhCCCCCCceEEeecCceechhHHHHHHHHHCCCEEEEcC-HHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhcccc-
Confidence 3478889999999999999999999999999999999985 33456899999999999999999999999877644221
Q ss_pred cCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEE
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 162 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 162 (900)
....++++|.++++|+++++.+.+.+.+.+|++++++.||+||+++.++....... ........++|+|++++++
T Consensus 253 -~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~----~~~~~~~~~vg~~~~~~~~ 327 (502)
T TIGR01734 253 -NQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQE----ILDQYPRLPIGFAKPDMNL 327 (502)
T ss_pred -ccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEcccc----ccccCCccccccccCCCEE
Confidence 12346899999999999999999999999999999999999999765543321110 1112244679999999999
Q ss_pred EEecCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcc
Q 002615 163 VLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 239 (900)
Q Consensus 163 ~i~d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 239 (900)
+|+++++ ++++.|||+++|+.++.||+++++.+.+.|... .+.+||+|||+|+++++ +++++||
T Consensus 328 ~i~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~------------~~~~~~~TGDlg~~~~~-~l~i~GR 394 (502)
T TIGR01734 328 FIMDEEGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSH------------EGQPAYRTGDAGTITDG-QLFYQGR 394 (502)
T ss_pred EEECCCCCCCCCCCeeEEEEccccccccccCCcccchHhheeC------------CCcEEEECCCEEEEECC-EEEEecc
Confidence 9998765 345679999999999999999999888777431 24579999999999976 9999999
Q ss_pred cCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEee-cCCceEEEEEEEEecCCCCch-HHHHHHHHHHHHhhCCCCccC
Q 002615 240 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHK-HQGELVILVAFIVLKEKKTSS-EIFLSSIKSWVSSKLPLAMIP 317 (900)
Q Consensus 240 ~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~-~~~~~~~l~~~v~~~~~~~~~-~~~~~~l~~~l~~~l~~~~~P 317 (900)
.+|+||++|++|+|.+||+.+.++|.|.++++++.. .......+++++++....... .....++++.++++||.+++|
T Consensus 395 ~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P 474 (502)
T TIGR01734 395 LDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFEKEFQLTKAIKKELKKSLPAYMIP 474 (502)
T ss_pred ccCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecccccccchhhHHHHHHHHhhhChhhcCC
Confidence 999999999999999999999999999999999865 444556788888876543322 233478999999999999999
Q ss_pred CEEEEcCCcCCCCCCCcchhhhcccc
Q 002615 318 NRFVFMDSLPMTSSGKVDYASLSAST 343 (900)
Q Consensus 318 ~~~~~v~~lP~t~~GKidr~~L~~~~ 343 (900)
..++++++||+|++|||+|++|+++.
T Consensus 475 ~~~~~v~~lP~t~~gKv~r~~l~~~~ 500 (502)
T TIGR01734 475 RKFIYRDQLPLTANGKIDRKALAEEV 500 (502)
T ss_pred cEEEEccccCCCCCCcccHHHHHHhh
Confidence 99999999999999999999998754
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=377.53 Aligned_cols=311 Identities=18% Similarity=0.244 Sum_probs=255.5
Q ss_pred CCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhccC
Q 002615 5 YPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHN 84 (900)
Q Consensus 5 ~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~~ 84 (900)
++...+|+++..+|++|+.++..++.+++.|+++++.+ .++..+++.|+++++|++.++|++++.+.......
T Consensus 209 ~~~~~~~~~~~~~p~~h~~~l~~~~~~l~~G~~~v~~~-----~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~-- 281 (540)
T PRK05857 209 VTWVVGETTYSPLPATHIGGLWWILTCLMHGGLCVTGG-----ENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSA-- 281 (540)
T ss_pred cccccCceeeecCCccccchHHHHHHHhhcceeEEecC-----CChhHHHHHHHhcCcceEEeChHHHHHHHhccccC--
Confidence 46677899999999999999988999999999987753 47788999999999999999999999998754322
Q ss_pred CCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEEEE
Q 002615 85 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 164 (900)
Q Consensus 85 ~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 164 (900)
..+++++|.+++||++++....+ +.+.+ ++++++.||+||++..+........ ........++|+|+++++++|
T Consensus 282 ~~~~~~lr~~~~gG~~~~~~~~~-~~~~~-g~~i~~~YG~TE~~~~~~~~~~~~~----~~~~~~~~~~G~~~~g~~v~i 355 (540)
T PRK05857 282 NATVPSLRLVGYGGSRAIAADVR-FIEAT-GVRTAQVYGLSETGCTALCLPTDDG----SIVKIEAGAVGRPYPGVDVYL 355 (540)
T ss_pred CCcCccceEEEEcCccCCchhHH-HHHHh-CCeeecccCCCcCCceeeecccccc----cccccccCCcCcccCCcEEEE
Confidence 23478999999999999987765 44555 7899999999999864332211110 001113467999999999999
Q ss_pred ecCCCC---------CCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEE
Q 002615 165 VESDTV---------KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLV 235 (900)
Q Consensus 165 ~d~~~~---------~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~ 235 (900)
+|+++. .++.|||+|+|+.++.||+++++.+.+.|. ++||+|||+|+++++|+++
T Consensus 356 ~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~----------------~g~~~TGDlg~~d~~g~l~ 419 (540)
T PRK05857 356 AATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLI----------------DGWVNTGDLLERREDGFFY 419 (540)
T ss_pred ECccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhcC----------------CCceeccceEEEcCCceEE
Confidence 986542 245699999999999999999998888772 4699999999999999999
Q ss_pred EEcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCc--hHHHHHHHHHHHHhhCCC
Q 002615 236 FLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTS--SEIFLSSIKSWVSSKLPL 313 (900)
Q Consensus 236 ~~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~--~~~~~~~l~~~l~~~l~~ 313 (900)
++||.||+||++|++|+|.|||.+|..||.|.+|+|++.++...++.++++++....... .+.+.+.+++.+++.++.
T Consensus 420 ~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~~~l~~~~~~~~~~~l~~ 499 (540)
T PRK05857 420 IKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAELDESAARALKHTIAARFRRESEP 499 (540)
T ss_pred EeccccccEecCCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCCCChhhHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999999999998877666677777776543221 223445677777888999
Q ss_pred CccCCEEEEcCCcCCCCCCCcchhhhccccc
Q 002615 314 AMIPNRFVFMDSLPMTSSGKVDYASLSASTS 344 (900)
Q Consensus 314 ~~~P~~~~~v~~lP~t~~GKidr~~L~~~~~ 344 (900)
|++|..++++++||+|++||+||++|++...
T Consensus 500 ~~~P~~v~~~~~iP~t~~GKi~r~~l~~~~~ 530 (540)
T PRK05857 500 MARPSTIVIVTDIPRTQSGKVMRASLAAAAT 530 (540)
T ss_pred ccCCeEEEEhhcCCCCCCcceeHHHHHHhhh
Confidence 9999999999999999999999999987654
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=381.95 Aligned_cols=319 Identities=19% Similarity=0.187 Sum_probs=255.2
Q ss_pred cCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhcc
Q 002615 4 LYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQH 83 (900)
Q Consensus 4 ~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~ 83 (900)
.++++++|++++.+|++|+++.+.++.+|+.|+++++++. ..++..+++++++++||++.++|++++.+.+....
T Consensus 391 ~~~l~~~d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g---~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~-- 465 (728)
T PLN03052 391 HLDIRKGDIVCWPTNLGWMMGPWLVYASLLNGATLALYNG---SPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCM-- 465 (728)
T ss_pred hcCCCCCcEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCC---CCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCc--
Confidence 3688999999999999999999889999999999999853 23455799999999999999999999998765321
Q ss_pred CCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEEE
Q 002615 84 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 163 (900)
Q Consensus 84 ~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 163 (900)
...++++||.+++|||+++++....+.+.++...++|.||+||+++.+..... . ......++|.|+++++++
T Consensus 466 ~~~dlssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~--~------~~~~~g~~g~p~~g~~v~ 537 (728)
T PLN03052 466 AGLDWSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSL--L------QPQAFAAFSTPAMGCKLF 537 (728)
T ss_pred ccCChhheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCC--C------CCCCCCccccCCCCceEE
Confidence 22457899999999999999988887777654679999999999764332111 0 011346789999999999
Q ss_pred EecCCCCC---C--CccEEEEcccc--ccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEE
Q 002615 164 LVESDTVK---P--DEGEIYAGGLC--LSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVF 236 (900)
Q Consensus 164 i~d~~~~~---~--~~GEl~v~g~~--~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~ 236 (900)
|+|+++.+ + +.|||+++++. ...+|++++. ....|...+. ..+++||+|||++++++||+++|
T Consensus 538 v~d~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~~-~~~yf~~~p~---------~~g~~~~~tGDl~~~d~dG~l~i 607 (728)
T PLN03052 538 ILDDSGNPYPDDAPCTGELALFPLMFGASSTLLNADH-YKVYFKGMPV---------FNGKILRRHGDIFERTSGGYYRA 607 (728)
T ss_pred EECCCCCCCCCCCCceEEEEEeCCCCCCCccccCchh-hhhhhhcCCC---------CCCCEEEecCceEEECCCCeEEE
Confidence 99977642 3 25999998653 3456777642 3333322111 12356999999999999999999
Q ss_pred EcccCCcEEECceeeChHHHHHHHh-CCCCeeEEEEEEeecCCce-EEEEEEEEec--CCCC-chHHHHHHHHHHHHhhC
Q 002615 237 LGRKDRTIKINGQRMALEEIEHTLR-GHPDVVDTAVVSHKHQGEL-VILVAFIVLK--EKKT-SSEIFLSSIKSWVSSKL 311 (900)
Q Consensus 237 ~GR~dd~ik~~G~rv~~~~iE~~l~-~~~~v~~~~v~~~~~~~~~-~~l~~~v~~~--~~~~-~~~~~~~~l~~~l~~~l 311 (900)
+||.||+||++|+||+|.|||++|. .||.|.+++|++.+++..+ +.+++||+++ ++.. ..+.+.+.+++.++++|
T Consensus 608 ~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g~~~~~~~L~~~i~~~i~~~l 687 (728)
T PLN03052 608 HGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKL 687 (728)
T ss_pred EecCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999995 7999999999999887554 7899999987 3332 23566777888899999
Q ss_pred CCCccCCEEEEcCCcCCCCCCCcchhhhcccccc
Q 002615 312 PLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSF 345 (900)
Q Consensus 312 ~~~~~P~~~~~v~~lP~t~~GKidr~~L~~~~~~ 345 (900)
+++++|..|+++++||+|++|||+|++|++.+..
T Consensus 688 ~~~~~p~~i~~v~~lP~T~sGKi~Rr~Lr~~~~~ 721 (728)
T PLN03052 688 NPLFKVSAVVIVPSFPRTASNKVMRRVLRQQLAQ 721 (728)
T ss_pred CCccCCCEEEEcCCCCCCCchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999876543
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=374.52 Aligned_cols=304 Identities=23% Similarity=0.350 Sum_probs=259.2
Q ss_pred ccCCCCCCcEEEEccCcchHhHHH--HHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQ--EFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQ 80 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~--~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~ 80 (900)
+.+.++++|+++..+|++|.+++. .++.++..|+++++.+ ..++..+++.++++++|++.++|++++.++....
T Consensus 217 ~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~~----~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~ 292 (527)
T TIGR02275 217 EICWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAP----DPSPTDCFPLIERHKVTVTALVPPAVALWMQAAS 292 (527)
T ss_pred hhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEECC----CCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCcc
Confidence 356788999999999999998875 4788999999999975 4688999999999999999999999998887654
Q ss_pred hccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccC-C
Q 002615 81 SQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPIS-N 159 (900)
Q Consensus 81 ~~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~-~ 159 (900)
.. ...+++||.+++||+++++.+.+.+.+.+ ++++++.||+||++...+... . .......++|+|++ +
T Consensus 293 ~~--~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~--~------~~~~~~~~~G~~~~~~ 361 (527)
T TIGR02275 293 KS--RYDLSSLKLLQVGGAKFSEAAARRVPAVF-GCQLQQVFGMAEGLVNYTRLD--D------PAEIIFTTQGRPMSPD 361 (527)
T ss_pred cc--CCCccceEEEEEcCCCCCHHHHHHHHHHh-CCeEEeeeccCccCccccCCC--C------ccccccccCCCCCCCC
Confidence 32 23468999999999999999999999888 789999999999754332211 0 01123457899994 7
Q ss_pred cEEEEecCCCC---CCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEE
Q 002615 160 CDIVLVESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVF 236 (900)
Q Consensus 160 ~~~~i~d~~~~---~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~ 236 (900)
..++++|+++. +++.|||+++|+.++.||+++++.+.+.|. .++||+|||+++++++|++++
T Consensus 362 ~~v~i~d~~g~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~---------------~dg~~~TGDl~~~~~~g~l~~ 426 (527)
T TIGR02275 362 DEVRVVDDHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFD---------------AEGFYYTGDLVRLTPEGYIVV 426 (527)
T ss_pred ceEEEECCCCCCCCCCCceEEEecCCccchhhcCChhHhHhhcC---------------cCCCEEcCceEEEcCCccEEE
Confidence 89999987653 567799999999999999999998877663 367999999999999999999
Q ss_pred EcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhh-CCCCc
Q 002615 237 LGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK-LPLAM 315 (900)
Q Consensus 237 ~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~-l~~~~ 315 (900)
+||.||+||++|++|+|.+||++|.+||.|.+++|++.++...++.++++++++.... ...+|+++++++ +|.++
T Consensus 427 ~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~~~----~~~~l~~~l~~~~l~~~~ 502 (527)
T TIGR02275 427 VGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDPAL----KAAQLRRFLRERGLAEYK 502 (527)
T ss_pred EecccceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCCCC----CHHHHHHHHHhCCCcccc
Confidence 9999999999999999999999999999999999999988877778899998765432 236899999885 99999
Q ss_pred cCCEEEEcCCcCCCCCCCcchhhhc
Q 002615 316 IPNRFVFMDSLPMTSSGKVDYASLS 340 (900)
Q Consensus 316 ~P~~~~~v~~lP~t~~GKidr~~L~ 340 (900)
+|..++++++||+|++||++|++|+
T Consensus 503 ~P~~i~~v~~iP~t~sGKv~r~~L~ 527 (527)
T TIGR02275 503 LPDRVEFIDSLPLTAVGKIDKKALR 527 (527)
T ss_pred CCCEEEEeccCCCCCccceeHHhcC
Confidence 9999999999999999999999874
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=369.34 Aligned_cols=301 Identities=23% Similarity=0.326 Sum_probs=258.1
Q ss_pred ccCCCCCCcEEEEccCcchHhHHH-HHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQ-EFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
+.+++.++|+++..+|++|..++. .++.++..|+++++.+ ..++..+++.++ +++|++.++|+++..+.+....
T Consensus 162 ~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~----~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~ 236 (471)
T PRK07787 162 EAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTG----RPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEA 236 (471)
T ss_pred HhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecC----CCCHHHHHHHHh-hCceEEEcchHHHHHHHhCccc
Confidence 457788999999999999998875 4899999999999886 578999999999 9999999999999988864221
Q ss_pred ccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcE
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161 (900)
Q Consensus 82 ~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 161 (900)
...++++|.++.||+++++.+++.|.+.+ +.++++.||+||++..++... . ......++|+|++++.
T Consensus 237 ---~~~l~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~--~-------~~~~~~~vG~~~~g~~ 303 (471)
T PRK07787 237 ---ARALRGARLLVSGSAALPVPVFDRLAALT-GHRPVERYGMTETLITLSTRA--D-------GERRPGWVGLPLAGVE 303 (471)
T ss_pred ---cccccceeEEEECCCCCCHHHHHHHHHHc-CCCeecccCccccCcceecCC--C-------CcccCCcccccCCCcE
Confidence 12367899999999999999999999877 788999999999976433211 1 1123457999999999
Q ss_pred EEEecCCCCC----C-CccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEE
Q 002615 162 IVLVESDTVK----P-DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVF 236 (900)
Q Consensus 162 ~~i~d~~~~~----~-~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~ 236 (900)
++|+|+++.+ + ..|||+++|+.++.||+++++.+.+.|.. ++||+|||+|++++||.+++
T Consensus 304 ~~i~d~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~---------------~~~~~TGDlg~~~~dg~l~~ 368 (471)
T PRK07787 304 TRLVDEDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTA---------------DGWFRTGDVAVVDPDGMHRI 368 (471)
T ss_pred EEEECCCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccC---------------CCceecCceEEEcCCCCEEE
Confidence 9999876532 2 26999999999999999999998877732 57999999999999999999
Q ss_pred Eccc-CCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCc
Q 002615 237 LGRK-DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAM 315 (900)
Q Consensus 237 ~GR~-dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 315 (900)
+||+ |++||++|++|+|.+||++|.+++.|.+++|++.++...++.+++++++... ...+++++++++.|+.++
T Consensus 369 ~GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~-----~~~~~l~~~l~~~l~~~~ 443 (471)
T PRK07787 369 VGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGADD-----VAADELIDFVAQQLSVHK 443 (471)
T ss_pred eCCCCceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeCCC-----CCHHHHHHHHHhhccccc
Confidence 9996 8999999999999999999999999999999998887777889999987332 123578999999999999
Q ss_pred cCCEEEEcCCcCCCCCCCcchhhhcc
Q 002615 316 IPNRFVFMDSLPMTSSGKVDYASLSA 341 (900)
Q Consensus 316 ~P~~~~~v~~lP~t~~GKidr~~L~~ 341 (900)
+|..++++++||+|++||++|++|++
T Consensus 444 ~P~~i~~~~~iP~~~~GKi~r~~L~~ 469 (471)
T PRK07787 444 RPREVRFVDALPRNAMGKVLKKQLLS 469 (471)
T ss_pred CCcEEEEeccCCCCCCccccHHHhcc
Confidence 99999999999999999999999975
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=372.49 Aligned_cols=304 Identities=23% Similarity=0.359 Sum_probs=259.8
Q ss_pred cCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhcc
Q 002615 4 LYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQH 83 (900)
Q Consensus 4 ~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~ 83 (900)
.++++++|++++.+|++|..++..++.++..|+++++.+ ..++..+++.++++++|++.++|+++..+.......
T Consensus 176 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~----~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~- 250 (483)
T PRK03640 176 NLGLTEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVE----KFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG- 250 (483)
T ss_pred hcCCCcCcEEEEecCHHHHHHHHHHHHHHhcCCEEEecC----CCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-
Confidence 468899999999999999999988999999999999986 578999999999999999999999999988654322
Q ss_pred CCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEEE
Q 002615 84 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 163 (900)
Q Consensus 84 ~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 163 (900)
....+||.+++||+++++.+++.+.+. ++++++.||+||++..+....... ......++|+|+++++++
T Consensus 251 --~~~~~lr~~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~-------~~~~~~~vG~p~~~~~~~ 319 (483)
T PRK03640 251 --TYPSSFRCMLLGGGPAPKPLLEQCKEK--GIPVYQSYGMTETASQIVTLSPED-------ALTKLGSAGKPLFPCELK 319 (483)
T ss_pred --ccCCcceEEEEcCCCCCHHHHHHHHHh--CCCeeeeeccCcccccccccCccc-------ccccCCCcccccCCcEEE
Confidence 224689999999999999999988774 789999999999875433222111 112456899999999999
Q ss_pred EecCCC--CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcccC
Q 002615 164 LVESDT--VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 241 (900)
Q Consensus 164 i~d~~~--~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 241 (900)
+.++.. +.+..|||+++|+.++.||+++++.+...| .++||+|||++++++||.++++||+|
T Consensus 320 i~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~----------------~~~~~~tGDl~~~~~~g~l~~~GR~~ 383 (483)
T PRK03640 320 IEKDGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETF----------------QDGWFKTGDIGYLDEEGFLYVLDRRS 383 (483)
T ss_pred EecCCCcCCCCCceEEEEECcchhhhhcCCHHHHHHHH----------------hcCCeeccceEEEcCCCCEEEeeccc
Confidence 987532 345679999999999999999998888776 25799999999999999999999999
Q ss_pred CcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCEEE
Q 002615 242 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 321 (900)
Q Consensus 242 d~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~~~ 321 (900)
|+||++|.+|+|.+||+.+.+++.|.++++++..++..+..++++++..... ..+++++++++.|+.|++|..|+
T Consensus 384 ~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~l~~~~~p~~i~ 458 (483)
T PRK03640 384 DLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGEV-----TEEELRHFCEEKLAKYKVPKRFY 458 (483)
T ss_pred CeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeCCCC-----CHHHHHHHHHHhccCCCCCcEEE
Confidence 9999999999999999999999999999999887766666777777754322 23578999999999999999999
Q ss_pred EcCCcCCCCCCCcchhhhccccc
Q 002615 322 FMDSLPMTSSGKVDYASLSASTS 344 (900)
Q Consensus 322 ~v~~lP~t~~GKidr~~L~~~~~ 344 (900)
++++||+|++||++|++|++++.
T Consensus 459 ~~~~iP~t~~gK~~r~~l~~~~~ 481 (483)
T PRK03640 459 FVEELPRNASGKLLRHELKQLVE 481 (483)
T ss_pred EeCCCCCCCccceeHHHHHHHHh
Confidence 99999999999999999987654
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=373.87 Aligned_cols=309 Identities=21% Similarity=0.322 Sum_probs=262.8
Q ss_pred ccCCCCCCcEEEEccCcchHhHHH--HHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQ--EFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQ 80 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~--~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~ 80 (900)
+.++++++|++++.+|++|.+++. .++.+|..|+++++.+ ..++..++++++++++|++.++|++++.++....
T Consensus 216 ~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~----~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~ 291 (536)
T PRK10946 216 EICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAP----DPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIA 291 (536)
T ss_pred HhcCCCCCceEEEecCccccccchhhhHHHHhhcCcEEEECC----CCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhc
Confidence 467889999999999999988764 5788999999999886 5678889999999999999999999999987643
Q ss_pred hccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeecc-CC
Q 002615 81 SQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPI-SN 159 (900)
Q Consensus 81 ~~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~-~~ 159 (900)
.......+++||.+++||+++++.+.+.+.+.+ ++++++.||+||++..++... . + ......++|+|+ ++
T Consensus 292 ~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~--~-~-----~~~~~~~~G~p~~~~ 362 (536)
T PRK10946 292 EGGSRAQLASLKLLQVGGARLSETLARRIPAEL-GCQLQQVFGMAEGLVNYTRLD--D-S-----DERIFTTQGRPMSPD 362 (536)
T ss_pred ccCccccccceeEEEECCCCCCHHHHHHHHHhc-CCeEEEeecccccceeeecCC--C-c-----cccccccCCcccCCC
Confidence 333334467999999999999999999998888 789999999999764332211 1 0 111345789999 78
Q ss_pred cEEEEecCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEE
Q 002615 160 CDIVLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVF 236 (900)
Q Consensus 160 ~~~~i~d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~ 236 (900)
+.++++|+++ +.++.|||+++|+.++.||+++++.+.+.|.. ++||+|||+++++++|++++
T Consensus 363 ~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~---------------d~~~~TGDl~~~d~~G~l~~ 427 (536)
T PRK10946 363 DEVWVADADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDA---------------NGFYCSGDLVSIDPDGYITV 427 (536)
T ss_pred ceEEEECCCCCCCCCCCccEEEEecCccchhhcCCcccchhhccc---------------CCceecCceEEECCCCcEEE
Confidence 9999998665 35677999999999999999999998887743 67999999999999999999
Q ss_pred EcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhh-CCCCc
Q 002615 237 LGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK-LPLAM 315 (900)
Q Consensus 237 ~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~-l~~~~ 315 (900)
+||.||+||++|++|+|.+||+.|.+||+|.+++|++.++...++.+++++++++. . ..+++++++++. +|.|+
T Consensus 428 ~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~-~----~~~~l~~~~~~~~l~~~~ 502 (536)
T PRK10946 428 VGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEP-L----KAVQLRRFLREQGIAEFK 502 (536)
T ss_pred eccccceeecCCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCC-C----CHHHHHHHHHhCCccccc
Confidence 99999999999999999999999999999999999998887667788898887654 2 235788899876 99999
Q ss_pred cCCEEEEcCCcCCCCCCCcchhhhccccc
Q 002615 316 IPNRFVFMDSLPMTSSGKVDYASLSASTS 344 (900)
Q Consensus 316 ~P~~~~~v~~lP~t~~GKidr~~L~~~~~ 344 (900)
+|..+++++++|+|++||++|++|+++..
T Consensus 503 ~P~~~~~~~~iP~t~~GKv~r~~L~~~~~ 531 (536)
T PRK10946 503 LPDRVECVDSLPLTAVGKVDKKQLRQWLA 531 (536)
T ss_pred cCcEEEEeccCCCCCCCcccHHHHHHHHH
Confidence 99999999999999999999999987654
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=386.15 Aligned_cols=310 Identities=18% Similarity=0.224 Sum_probs=250.6
Q ss_pred ccCCCCCCcEEEEccCcchHhHHH-HHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQ-EFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
..++++++|++++.+|++|.+++. .++.+|..|+++++.+. ..++..+.+.++++++|++.++|+++..+.+..
T Consensus 399 ~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~---~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~-- 473 (718)
T PRK08043 399 TIADFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPS---PLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA-- 473 (718)
T ss_pred HhhCCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCC---cccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--
Confidence 356889999999999999999875 48899999999998752 245677889999999999999999998776532
Q ss_pred ccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcE
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161 (900)
Q Consensus 82 ~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 161 (900)
...++++||.+++|||++++++.+.+.+.+ ++++++.||+||++..++.... ......++|+|+++++
T Consensus 474 --~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~---------~~~~~~svG~p~pg~~ 541 (718)
T PRK08043 474 --NPYDFARLRYVVAGAEKLQESTKQLWQDKF-GLRILEGYGVTECAPVVSINVP---------MAAKPGTVGRILPGMD 541 (718)
T ss_pred --CcccccceEEEEEeCccCCHHHHHHHHHHc-CCCeecccCcccccceEEecCC---------cccCCCCCCCcCCCCe
Confidence 113468999999999999999999999888 7899999999999876543211 0114568999999999
Q ss_pred EEEecCCCCCCCccEEEEccccccccccCC--CCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcc
Q 002615 162 IVLVESDTVKPDEGEIYAGGLCLSNGYFSE--STFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 239 (900)
Q Consensus 162 ~~i~d~~~~~~~~GEl~v~g~~~~~gY~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 239 (900)
++++|.++ .+..|||+++|++++.||+++ ++.+...+..... ....++||+|||+|++|+||+++|+||
T Consensus 542 ~~i~d~~~-~~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~--------~~~~~gw~~TGDlg~~d~dG~l~i~GR 612 (718)
T PRK08043 542 ARLLSVPG-IEQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENAR--------GEMERGWYDTGDIVRFDEQGFVQIQGR 612 (718)
T ss_pred eEEecCCC-CCCceEEEEecCCccccccCCCCccccccccccccc--------ccccCCeEecCCEEEEcCCCcEEEEec
Confidence 99997654 345699999999999999983 4432211110000 001358999999999999999999999
Q ss_pred cCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhh-CCCCccCC
Q 002615 240 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK-LPLAMIPN 318 (900)
Q Consensus 240 ~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~P~ 318 (900)
+||+||++|++|+|.|||+++.+|+.+.+++|++.++...++.+++++.. .. ...++++++++++ ||.|++|.
T Consensus 613 ~~d~I~~~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~~---~~---~~~~~l~~~~~~~~l~~~~vP~ 686 (718)
T PRK08043 613 AKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTTD---SE---LTREKLQQYAREHGVPELAVPR 686 (718)
T ss_pred CCCeeEeCcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEcC---cc---cCHHHHHHHHHhcCCCcccCCc
Confidence 99999999999999999999999998888888888777667777776642 11 1235789999887 99999999
Q ss_pred EEEEcCCcCCCCCCCcchhhhccccc
Q 002615 319 RFVFMDSLPMTSSGKVDYASLSASTS 344 (900)
Q Consensus 319 ~~~~v~~lP~t~~GKidr~~L~~~~~ 344 (900)
.++++++||+|++|||||++|+++..
T Consensus 687 ~i~~v~~lP~t~~GKi~r~~L~~~~~ 712 (718)
T PRK08043 687 DIRYLKQLPLLGSGKPDFVTLKSMVD 712 (718)
T ss_pred eEEEecccCcCCCCCcCHHHHHHHHh
Confidence 99999999999999999999987654
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=371.04 Aligned_cols=304 Identities=19% Similarity=0.294 Sum_probs=258.4
Q ss_pred ccCCCCCCcEEEEccCcchHhHH-HHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHL-QEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
+.+++.++|++++.+|++|..++ ..++.+++.|+++++.+ ..++..+++.++++++|++.++|+++..+......
T Consensus 229 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~----~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~ 304 (538)
T TIGR03208 229 ERLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQD----IWNPARAAELIRETGVTFTMASTPFLTDLCRAVKE 304 (538)
T ss_pred hhcCCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecC----ccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhc
Confidence 35678899999999999999876 45899999999999985 57899999999999999999999999988765432
Q ss_pred ccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcE
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161 (900)
Q Consensus 82 ~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 161 (900)
.. ..++++|.+++||+++++.+++.+.+.+ +++++|.||+||++.+++...... ......++|+|++++.
T Consensus 305 ~~--~~~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~-------~~~~~~~~G~~~~g~~ 374 (538)
T TIGR03208 305 SG--APVPSLFTFLCAGAPIPGILVERAWELL-GALIVSAWGMTENGAVTVTEPDDA-------LEKASTTDGRPLPGVE 374 (538)
T ss_pred cC--CCCCcceEEEEcCCCCCHHHHHHHHHHc-CCeEEeeeccCcCCCccccCcccc-------hhhccCcccccCCCCE
Confidence 21 3468999999999999999999998888 789999999999987655322110 0112457899999999
Q ss_pred EEEecCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEc
Q 002615 162 IVLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 238 (900)
Q Consensus 162 ~~i~d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 238 (900)
++++++++ +.++.|||+++|++++.||+++|+.+.. ..++||+|||+|+++++|.++++|
T Consensus 375 v~i~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~-----------------~~~~~~~TGD~~~~~~~g~l~~~g 437 (538)
T TIGR03208 375 VKVIDANGAKLSQGETGRLLVRGCSNFGGYLKRPHLNST-----------------DAEGWFDTGDLAFQDAEGYIRING 437 (538)
T ss_pred EEEECCCCCCCcCCCCcEEEEecCcccccccCCcccccc-----------------cCCCceeccceEEECCCCcEEEEe
Confidence 99998765 3456799999999999999999886542 136899999999999999999999
Q ss_pred ccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHh-hCCCCccC
Q 002615 239 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSS-KLPLAMIP 317 (900)
Q Consensus 239 R~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~P 317 (900)
|.||+||++|++|+|.+||++|.+||.|.+++|++.++...++.+++++++....... .+++++++++ +++.+++|
T Consensus 438 R~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~---~~~l~~~~~~~~l~~~~~P 514 (538)
T TIGR03208 438 RSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTLD---FAAMVAFLKAQKVALQYIP 514 (538)
T ss_pred ccCceEEECCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCCCCC---HHHHHHHHHhcchhhccCC
Confidence 9999999999999999999999999999999999988777677889999886543322 3578888885 79999999
Q ss_pred CEEEEcCCcCCCCCCCcchhhhc
Q 002615 318 NRFVFMDSLPMTSSGKVDYASLS 340 (900)
Q Consensus 318 ~~~~~v~~lP~t~~GKidr~~L~ 340 (900)
..+++++++|+|++||++|++|+
T Consensus 515 ~~i~~v~~iP~t~~gKv~r~~L~ 537 (538)
T TIGR03208 515 ERLEVVDALPATPAGKIQKFRLR 537 (538)
T ss_pred cEEEEeccCCCCCccccchHhhc
Confidence 99999999999999999999986
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=376.88 Aligned_cols=314 Identities=19% Similarity=0.273 Sum_probs=265.3
Q ss_pred ccCCCCCCcEEEEccCcchHhHHH-HHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQ-EFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
+.++++++|+++..+|++|..++. .++.++..|+++++... ..++..+++.++++++|++.++|+++..++.....
T Consensus 233 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~---~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~ 309 (559)
T PRK08315 233 EAMKLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGE---GFDPLATLAAVEEERCTALYGVPTMFIAELDHPDF 309 (559)
T ss_pred HhcCCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecC---CCCHHHHHHHHHHcCCeEEecchHHHHHHHhCccc
Confidence 457889999999999999998874 48999999999996532 56899999999999999999999999888764332
Q ss_pred ccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcE
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161 (900)
Q Consensus 82 ~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 161 (900)
. ...+++||.+++|||++++.+++.+.+.++..++++.||+||++.+++...... .......++|+|++++.
T Consensus 310 ~--~~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~------~~~~~~~~vG~p~~~~~ 381 (559)
T PRK08315 310 A--RFDLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDD------PLEKRVTTVGRALPHLE 381 (559)
T ss_pred C--CCCchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCccc------chhhccCCCCccCCCcE
Confidence 2 234689999999999999999999999887777999999999987655432111 01124568999999999
Q ss_pred EEEecCC-C---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEE
Q 002615 162 IVLVESD-T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFL 237 (900)
Q Consensus 162 ~~i~d~~-~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~ 237 (900)
++++|++ + +.++.|||+|+|+.++.||+++|+.+...|. .++||+|||++++++||.++|+
T Consensus 382 v~i~d~~~~~~~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~---------------~~~~~~TGD~~~~~~dg~~~~~ 446 (559)
T PRK08315 382 VKIVDPETGETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAID---------------ADGWMHTGDLAVMDEEGYVNIV 446 (559)
T ss_pred EEEEcCccCCcCCCCCceEEEEECchhhhhhcCChhHHhhcCC---------------CCCCEEccceEEEcCCceEEEE
Confidence 9999876 4 3567799999999999999999988776552 2579999999999999999999
Q ss_pred cccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccC
Q 002615 238 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP 317 (900)
Q Consensus 238 GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P 317 (900)
||.||+||++|++|+|.|||++|.++|+|.+++|++..+...+..++++|++...... ...+++++++++||.|++|
T Consensus 447 GR~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~l~~~l~~~~~P 523 (559)
T PRK08315 447 GRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATL---TEEDVRDFCRGKIAHYKIP 523 (559)
T ss_pred eeccceEEECCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCCCC---CHHHHHHHHHhhcccccCC
Confidence 9999999999999999999999999999999999998877666778888887654322 2358999999999999999
Q ss_pred CEEEEcCCcCCCCCCCcchhhhcccccc
Q 002615 318 NRFVFMDSLPMTSSGKVDYASLSASTSF 345 (900)
Q Consensus 318 ~~~~~v~~lP~t~~GKidr~~L~~~~~~ 345 (900)
..++++++||+|++||++|.+|++++..
T Consensus 524 ~~i~~v~~lP~t~~GK~~r~~L~~~~~~ 551 (559)
T PRK08315 524 RYIRFVDEFPMTVTGKIQKFKMREMMIE 551 (559)
T ss_pred cEEEEcccCCCCCCCceeHHHHHHHHHh
Confidence 9999999999999999999999876543
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=372.09 Aligned_cols=309 Identities=20% Similarity=0.285 Sum_probs=263.8
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHH-HHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
..+++.++|+++..+|++|.+++.. ++.++..|+++++.+ ..++..+++.|+++++|++.++|++++.+......
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~ 275 (513)
T PRK07656 200 EYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPLP----VFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDR 275 (513)
T ss_pred HhhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEecC----cCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCc
Confidence 4578899999999999999999865 889999999999875 56899999999999999999999999999876543
Q ss_pred ccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcE
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161 (900)
Q Consensus 82 ~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 161 (900)
.. ..+++||.+++||+++++.+++.+.+.++...++|.||+||++++++....... ......++|+|++++.
T Consensus 276 ~~--~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~------~~~~~~~vG~~~~~~~ 347 (513)
T PRK07656 276 SA--EDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDD------RKTVAGTIGTAIAGVE 347 (513)
T ss_pred CC--CCccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCcccc------ccccCCCccccCCCcE
Confidence 32 246899999999999999999999998843389999999999877665432111 0112567999999999
Q ss_pred EEEecCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEc
Q 002615 162 IVLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 238 (900)
Q Consensus 162 ~~i~d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 238 (900)
++++|+++ +.+..|||+++|+.++.||++++..+...|. .++||+|||+|+++++|.++++|
T Consensus 348 ~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~---------------~~~~~~tGDl~~~~~~g~~~~~G 412 (513)
T PRK07656 348 NKIVNELGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAID---------------ADGWLHTGDLGRLDEEGYLYIVD 412 (513)
T ss_pred EEEECCCCCCCCCCCceEEEEEcchhhhhhcCCHHHHhhhhc---------------cCCceeccceEEEcCCeeEEEEe
Confidence 99998765 3456799999999999999999887776552 26799999999999999999999
Q ss_pred ccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCC
Q 002615 239 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 318 (900)
Q Consensus 239 R~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~ 318 (900)
|.||+||++|.+|+|.+||++|.++++|.+++|++..+...+..++++++.+...... .+++++++++.||.+++|.
T Consensus 413 R~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~ 489 (513)
T PRK07656 413 RKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAELT---EEELIAYCREHLAKYKVPR 489 (513)
T ss_pred cccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCCCCC---HHHHHHHHHhhcccccCCC
Confidence 9999999999999999999999999999999999988776677888899876533222 3578999999999999999
Q ss_pred EEEEcCCcCCCCCCCcchhhhcc
Q 002615 319 RFVFMDSLPMTSSGKVDYASLSA 341 (900)
Q Consensus 319 ~~~~v~~lP~t~~GKidr~~L~~ 341 (900)
.++++++||+|++||++|++|++
T Consensus 490 ~i~~v~~iP~t~~gK~~r~~l~~ 512 (513)
T PRK07656 490 SIEFLDELPKNATGKVLKRALRE 512 (513)
T ss_pred EEEEecCCCCCCccceeHHHHhc
Confidence 99999999999999999999875
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=375.30 Aligned_cols=301 Identities=20% Similarity=0.267 Sum_probs=255.5
Q ss_pred CcEEEEccCcchHhHHH-HHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhccCCCCC
Q 002615 10 EELLLFKTSISFIDHLQ-EFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVP 88 (900)
Q Consensus 10 ~d~~l~~~p~~~~~~~~-~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~ 88 (900)
.++++..+|++|..++. .++.++..|++.++.+. ..++..+++.++++++|++.++|+++..++...... ...+
T Consensus 251 ~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~--~~~~ 325 (562)
T PRK05677 251 CEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISN---PRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFR--KLDF 325 (562)
T ss_pred ccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecC---cccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccc--cCCh
Confidence 46889999999999874 47778888988776642 457889999999999999999999999887643211 1235
Q ss_pred CCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEEEEecCC
Q 002615 89 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD 168 (900)
Q Consensus 89 ~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 168 (900)
++||.+++||+++++.+.+.|.+.+ ++++++.||+||++.+++..... .....++|+|++++.++++|++
T Consensus 326 ~~lr~v~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~---------~~~~~~vG~~~~~~~v~i~d~~ 395 (562)
T PRK05677 326 SALKLTLSGGMALQLATAERWKEVT-GCAICEGYGMTETSPVVSVNPSQ---------AIQVGTIGIPVPSTLCKVIDDD 395 (562)
T ss_pred hhceEEEEcCccCCHHHHHHHHHHc-CCCeeccCCccccCcceeecCcc---------CCCCCccCccCCCCEEEEECCC
Confidence 7899999999999999999999877 78999999999998765532211 1234579999999999999876
Q ss_pred C---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcccCCcEE
Q 002615 169 T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIK 245 (900)
Q Consensus 169 ~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik 245 (900)
+ +.++.|||+++|+.+++||+++|+.+.+.|. .++||+|||+|+++++|.++|.||+||+||
T Consensus 396 ~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~---------------~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~ 460 (562)
T PRK05677 396 GNELPLGEVGELCVKGPQVMKGYWQRPEATDEILD---------------SDGWLKTGDIALIQEDGYMRIVDRKKDMIL 460 (562)
T ss_pred CCCCCCCCCeEEEEecCccchhhcCCchhhhhccC---------------CCCcccccceEEECCCCcEEEEecCcCeEE
Confidence 5 3466799999999999999999999888773 257999999999999999999999999999
Q ss_pred ECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCEEEEcCC
Q 002615 246 INGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDS 325 (900)
Q Consensus 246 ~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~~~~v~~ 325 (900)
++|++|+|.|||+.|.+||.|.+++|++.++...+..+++++++++.... ..++++++++++|+.|++|..|+++++
T Consensus 461 ~~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~~~---~~~~l~~~~~~~l~~~~~P~~i~~v~~ 537 (562)
T PRK05677 461 VSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGETL---TKEQVMEHMRANLTGYKVPKAVEFRDE 537 (562)
T ss_pred eCCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCCCCC---CHHHHHHHHHHhhhhccCCcEEEEecc
Confidence 99999999999999999999999999998887777778888887654322 236899999999999999999999999
Q ss_pred cCCCCCCCcchhhhcccc
Q 002615 326 LPMTSSGKVDYASLSAST 343 (900)
Q Consensus 326 lP~t~~GKidr~~L~~~~ 343 (900)
||+|++||++|++|++..
T Consensus 538 iP~t~sGKi~r~~L~~~~ 555 (562)
T PRK05677 538 LPTTNVGKILRRELRDEE 555 (562)
T ss_pred CCCCCcccccHHHHHHHH
Confidence 999999999999997644
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=385.70 Aligned_cols=339 Identities=16% Similarity=0.139 Sum_probs=259.3
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCe---eEEEecHHHHHHHHHHH
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSI---SRLTTVPSLMRVVLPAL 79 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~v---t~~~~~Ps~l~~l~~~~ 79 (900)
+.++++++|+++.++|++|+.++..++.+++.|++++++++.....+|..+++.++++++ +++.++|+++..+....
T Consensus 214 ~~~~~~~~d~~l~~~Pl~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~ 293 (631)
T PRK07769 214 DALEGQEGDRGVSWLPFFHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAAR 293 (631)
T ss_pred HHcCCCCcceEEEeCCCcCchhhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhh
Confidence 356788999999999999999998888889999999988654344589999999999886 78999999887665431
Q ss_pred --hh-ccCCCCCCCcCEEEEeccCCChhhHHHHHhhC-----CCceEEeecCccccccccceecccCCccc---------
Q 002615 80 --QS-QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLF-----PNISILNLYGSTEVSGDCTYFDCKRLPSI--------- 142 (900)
Q Consensus 80 --~~-~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~-----~~~~l~~~YG~TE~~~~~~~~~~~~~~~~--------- 142 (900)
.. .....++++||.+++||+++++++.+.|.+.| |...++|.||+||++..++.......+..
T Consensus 294 ~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (631)
T PRK07769 294 GLPKDGEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELN 373 (631)
T ss_pred ccchhcccCcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHh
Confidence 11 11123578999999999999999999999886 23569999999999865554321110000
Q ss_pred -------c--ccCCCCcceeeeccCCcEEEEecCC-C---CCCCccEEEEccccccccccCCCCCCccchhccCCccccc
Q 002615 143 -------L--EMSTLKSVPIGLPISNCDIVLVESD-T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICN 209 (900)
Q Consensus 143 -------~--~~~~~~~~~~G~p~~~~~~~i~d~~-~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~ 209 (900)
. ........++|+|+++..++|+|++ + +.++.|||+|+|++++.||+++++.|++.|..........
T Consensus 374 ~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~ 453 (631)
T PRK07769 374 AGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSE 453 (631)
T ss_pred CCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCCCEEEEEecCCCccccccCChhHHHHHHhhhccccccc
Confidence 0 0000123578999999999999853 2 3467899999999999999999999999986422110000
Q ss_pred C--cCCCCCcceEecCceEEEccCCcEEEEcccCCcEEECceeeChHHHHHHHhC-CCCeeE--EEEEEeec--------
Q 002615 210 C--SVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRG-HPDVVD--TAVVSHKH-------- 276 (900)
Q Consensus 210 ~--~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~rv~~~~iE~~l~~-~~~v~~--~~v~~~~~-------- 276 (900)
. ......++||+|||+|+++ ||+|+|+||+||+||++|+||+|.|||++|.+ ||.|.+ ++|++.++
T Consensus 454 ~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~ 532 (631)
T PRK07769 454 SHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVF 532 (631)
T ss_pred ccccCcccCCCeeeccccccEE-CCEEEEEcccccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEecccccccccc
Confidence 0 0001235899999999984 99999999999999999999999999999996 899997 88888776
Q ss_pred -----------CCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCC-Cc-cCCEEEEcC--CcCCCCCCCcchhhhcc
Q 002615 277 -----------QGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPL-AM-IPNRFVFMD--SLPMTSSGKVDYASLSA 341 (900)
Q Consensus 277 -----------~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~-~~-~P~~~~~v~--~lP~t~~GKidr~~L~~ 341 (900)
+..++.+++++++.++... ...++|+++++++|+. ++ .|+.+++++ +||+|++|||+|++|++
T Consensus 533 ~~~~~~~~~~~~~~ge~~~a~v~~~~~~~~--~~~~~l~~~~~~~l~~~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~ 610 (631)
T PRK07769 533 DDSHAGLKFDPEDTSEQLVIVAERAPGAHK--LDPQPIADDIRAAIAVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRA 610 (631)
T ss_pred cccccccccccCCCCccEEEEEEecCcccc--ccHHHHHHHHHHHHHHHcCCCccEEEEECCCccccCCCcHHHHHHHHH
Confidence 4456778899988764211 2246788999999885 56 588888886 69999999999999987
Q ss_pred ccc
Q 002615 342 STS 344 (900)
Q Consensus 342 ~~~ 344 (900)
.+.
T Consensus 611 ~~~ 613 (631)
T PRK07769 611 AYL 613 (631)
T ss_pred HHH
Confidence 654
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=375.36 Aligned_cols=332 Identities=19% Similarity=0.219 Sum_probs=268.4
Q ss_pred cCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhcc
Q 002615 4 LYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQH 83 (900)
Q Consensus 4 ~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~ 83 (900)
.+++.++|++++.+|++|++++..++.++..|++++++++ ..++..+++.|+++++|++.++|+++..++.......
T Consensus 218 ~~~~~~~~~~l~~~pl~h~~g~~~~~~~l~~g~~~~~~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 294 (576)
T PRK05620 218 SLAVTHGESFLCCVPIYHVLSWGVPLAAFMSGTPLVFPGP---DLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNP 294 (576)
T ss_pred hcCCCCCCeEEEeCChHHhhhhHHHHHHHhcCceEEecCC---CCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccC
Confidence 5788999999999999999999888999999999998753 4588999999999999999999999998876543221
Q ss_pred CCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEEE
Q 002615 84 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 163 (900)
Q Consensus 84 ~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 163 (900)
....+||.+++||+++++.+.+.|.+.+ ++++++.||+||++..++......... .........++|++.++++++
T Consensus 295 --~~~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~~~~~~ 370 (576)
T PRK05620 295 --PERMSLQEIYVGGSAVPPILIKAWEERY-GVDVVHVWGMTETSPVGTVARPPSGVS-GEARWAYRVSQGRFPASLEYR 370 (576)
T ss_pred --cccCceeEEEEcCCCCCHHHHHHHHHHh-CCceeeeccccccccceeeeccCCccc-cccccccccccCCcCCceeEE
Confidence 1235899999999999999999998887 789999999999987665433211000 000001234689999999999
Q ss_pred EecCCCC----CCCccEEEEccccccccccCCCCCC----ccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEE
Q 002615 164 LVESDTV----KPDEGEIYAGGLCLSNGYFSESTFM----PSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLV 235 (900)
Q Consensus 164 i~d~~~~----~~~~GEl~v~g~~~~~gY~~~~~~~----~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~ 235 (900)
++++... .+..|||+++|+.++.||+++++.+ ...|...+... .......++||+|||++++++||.++
T Consensus 371 i~~~g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~---~~~~~~~~g~~~TGD~~~~~~dg~l~ 447 (576)
T PRK05620 371 IVNDGQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVED---ANDRFTADGWLRTGDVGSVTRDGFLT 447 (576)
T ss_pred EecCCccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchh---hhcccccCCcEecCceEEEcCCceEE
Confidence 9986221 2357999999999999999999887 55554322110 00001235799999999999999999
Q ss_pred EEcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCc
Q 002615 236 FLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAM 315 (900)
Q Consensus 236 ~~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 315 (900)
|+||.||+||++|++|+|.+||++|.+||.|.+++|++.++...++.++++++..++....+...++|+++++++||.|+
T Consensus 448 ~~GR~~d~i~~~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~l~~~L~~~~ 527 (576)
T PRK05620 448 IHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRETAERLRDQLRDRLPNWM 527 (576)
T ss_pred EEechhhhhhcCCEEEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCCcccccHHHHHHHHHhhCcccc
Confidence 99999999999999999999999999999999999999888776677888888776544333345789999999999999
Q ss_pred cCCEEEEcCCcCCCCCCCcchhhhcccccc
Q 002615 316 IPNRFVFMDSLPMTSSGKVDYASLSASTSF 345 (900)
Q Consensus 316 ~P~~~~~v~~lP~t~~GKidr~~L~~~~~~ 345 (900)
+|..|+++++||+|++||++|++|+++++.
T Consensus 528 ~P~~i~~v~~~P~t~~GKv~r~~L~~~~~~ 557 (576)
T PRK05620 528 LPEYWTFVDEIDKTSVGKFDKKDLRQHLAD 557 (576)
T ss_pred CCeEEEEeccCCCCCcccCcHHHHHHHHhc
Confidence 999999999999999999999999887664
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=372.65 Aligned_cols=313 Identities=19% Similarity=0.309 Sum_probs=265.9
Q ss_pred CCC-CCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhcc
Q 002615 5 YPL-HGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQH 83 (900)
Q Consensus 5 ~~~-~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~ 83 (900)
+++ ..+|+++..+|++|.+++..++.++..|+++++.+.. ..+|..+++.++++++|++.++|+++..++.......
T Consensus 210 ~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~ 287 (542)
T PRK07786 210 NGADINSDVGFVGVPLFHIAGIGSMLPGLLLGAPTVIYPLG--AFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARP 287 (542)
T ss_pred cCCCCCCceEEEecchHHHHHHHHHHHHHHccCEEEEccCC--CcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCc
Confidence 455 5789999999999999998899999999999997422 3589999999999999999999999999987543222
Q ss_pred CCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEEE
Q 002615 84 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 163 (900)
Q Consensus 84 ~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 163 (900)
. ..+||.+++||+++++++++.+.+.+++.++++.||+||++.+++...... ......++|+|++++.++
T Consensus 288 --~-~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~-------~~~~~~~~G~~~~~~~~~ 357 (542)
T PRK07786 288 --R-DLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGED-------AIRKLGSVGKVIPTVAAR 357 (542)
T ss_pred --c-CcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCccc-------ccccCCCccccCCCceEE
Confidence 1 237999999999999999999999999999999999999987655322111 111345789999999999
Q ss_pred EecCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEccc
Q 002615 164 LVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 240 (900)
Q Consensus 164 i~d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 240 (900)
|+|+++ +.++.|||+++|+.+++||+++++.+...| .++||+|||+++++++|.++++||.
T Consensus 358 i~d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f----------------~~~~~~TGDl~~~~~~g~~~i~GR~ 421 (542)
T PRK07786 358 VVDENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAF----------------AGGWFHSGDLVRQDEEGYVWVVDRK 421 (542)
T ss_pred EECCCCCCCcCCCceEEEEEChhhhhhhcCCHHHHHHHh----------------hCCcccccceEEEcCCceEEEEecc
Confidence 998765 345679999999999999999999888776 2479999999999999999999999
Q ss_pred CCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCEE
Q 002615 241 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 320 (900)
Q Consensus 241 dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~~ 320 (900)
||+||++|++|+|.|||++|.+||.|.+++|++......++.+++++++...... ...++++++++++++.|++|..+
T Consensus 422 ~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~l~~~l~~~~~P~~i 499 (542)
T PRK07786 422 KDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAA--LTLEDLAEFLTDRLARYKHPKAL 499 (542)
T ss_pred cceEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCCC--CCHHHHHHHHHhhccCCCCCCEE
Confidence 9999999999999999999999999999999988776556677888887654321 23468999999999999999999
Q ss_pred EEcCCcCCCCCCCcchhhhcccccccc
Q 002615 321 VFMDSLPMTSSGKVDYASLSASTSFTI 347 (900)
Q Consensus 321 ~~v~~lP~t~~GKidr~~L~~~~~~~~ 347 (900)
+++++||+|++||++|++|++.+....
T Consensus 500 ~~v~~iP~t~~GKv~r~~L~~~~~~~~ 526 (542)
T PRK07786 500 EIVDALPRNPAGKVLKTELRERYGACV 526 (542)
T ss_pred EEeccCCCCCcccccHHHHHHHHHhhh
Confidence 999999999999999999998877553
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=368.62 Aligned_cols=313 Identities=17% Similarity=0.202 Sum_probs=265.5
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
..+++.++++++..+|++|..++...+.++..|+++++.+ ..++..+++.++++++|++.++|+++..+.......
T Consensus 193 ~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~ 268 (511)
T PRK13391 193 RLWGFRSDMVYLSPAPLYHSAPQRAVMLVIRLGGTVIVME----HFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEV 268 (511)
T ss_pred HhcCCCCCCeEEEcCCHHHHHHHHHHHHHHHcCceEEECC----CCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhh
Confidence 3567788999999999999999988888999999999986 568999999999999999999999999887643322
Q ss_pred cCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEE
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 162 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 162 (900)
....+++++|.+++||+++++++.+.+.+.+ +..+++.||+||++.++.... .. ....+.++|+|+++ .+
T Consensus 269 ~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~-~~-------~~~~~~~vG~~~~g-~~ 338 (511)
T PRK13391 269 RDKYDLSSLEVAIHAAAPCPPQVKEQMIDWW-GPIIHEYYAATEGLGFTACDS-EE-------WLAHPGTVGRAMFG-DL 338 (511)
T ss_pred cccCCccceeEEEEccCCCCHHHHHHHHHHc-CCceeeeeccccccceEEecC-cc-------ccccCCCcCCcccc-eE
Confidence 2223468999999999999999999999887 678999999999987554321 11 01134578999999 68
Q ss_pred EEecCCCC---CCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcc
Q 002615 163 VLVESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 239 (900)
Q Consensus 163 ~i~d~~~~---~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 239 (900)
+++|+++. .+..|||+++|+ ++.||+++++.+.+.|.. .++||+|||+++++++|.++++||
T Consensus 339 ~i~d~~~~~~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~--------------~~~w~~TGD~g~~~~~g~l~~~gR 403 (511)
T PRK13391 339 HILDDDGAELPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHP--------------DGTWSTVGDIGYVDEDGYLYLTDR 403 (511)
T ss_pred EEECCCCCCCCCCCceEEEEecC-cceEEcCChhHhHHhhcc--------------CCCEEecCCEEEECCCccEEEecc
Confidence 88887663 456799999999 889999999988876632 248999999999999999999999
Q ss_pred cCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCE
Q 002615 240 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 319 (900)
Q Consensus 240 ~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~ 319 (900)
.||++|++|++|+|.+||++|.+||.|.+++|++.++...++.+++++++.+.....+...++|+++++++||.|++|..
T Consensus 404 ~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~ 483 (511)
T PRK13391 404 AAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGPALAAELIAFCRQRLSRQKCPRS 483 (511)
T ss_pred CCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCCcccchHHHHHHHHHhhcccCcCCcE
Confidence 99999999999999999999999999999999998887777788888887665444444567899999999999999999
Q ss_pred EEEcCCcCCCCCCCcchhhhccccc
Q 002615 320 FVFMDSLPMTSSGKVDYASLSASTS 344 (900)
Q Consensus 320 ~~~v~~lP~t~~GKidr~~L~~~~~ 344 (900)
+++++++|+|++||++|+.|++.+.
T Consensus 484 i~~~~~~P~t~~gKv~r~~l~~~~~ 508 (511)
T PRK13391 484 IDFEDELPRLPTGKLYKRLLRDRYW 508 (511)
T ss_pred EEEeecCCCCCccceeHHHHHHHhh
Confidence 9999999999999999999987654
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=375.39 Aligned_cols=313 Identities=19% Similarity=0.261 Sum_probs=265.3
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHH-HHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
..+++.++|+++..+|++|..+... ++.++..|++++++.. ..++..+++.++++++|++.++|+++..++.....
T Consensus 235 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~---~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~ 311 (558)
T PRK12583 235 ESLGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNE---AFDPLATLQAVEEERCTALYGVPTMFIAELDHPQR 311 (558)
T ss_pred HHhCCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecC---CCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccc
Confidence 3468889999999999999988744 7888999999987642 46889999999999999999999999887754332
Q ss_pred ccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcE
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161 (900)
Q Consensus 82 ~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 161 (900)
. ...+++||.+++|||++++.+.+.+.+.++...+++.||+||++.+++...... .......++|+|++++.
T Consensus 312 ~--~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~------~~~~~~~~vG~p~~~~~ 383 (558)
T PRK12583 312 G--NFDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAAD------DLERRVETVGRTQPHLE 383 (558)
T ss_pred c--CCCchhheEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccceeccCccc------ccccccCCCCccCCCCe
Confidence 2 234689999999999999999999999987778999999999997665432111 01124568999999999
Q ss_pred EEEecCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEc
Q 002615 162 IVLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 238 (900)
Q Consensus 162 ~~i~d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 238 (900)
++++|+++ +.++.|||+++|+.++.||+++++.+...|. .++||+|||++++++||++++.|
T Consensus 384 ~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~---------------~~~~~~TGDl~~~~~dg~l~i~G 448 (558)
T PRK12583 384 VKVVDPDGATVPRGEIGELCTRGYSVMKGYWNNPEATAESID---------------EDGWMHTGDLATMDEQGYVRIVG 448 (558)
T ss_pred EEEECCCCCCCCCCCeeEEEEEeCccchhhcCChHHHHhhcC---------------CCCCeeccceEEECCCccEEEEe
Confidence 99998765 3456799999999999999999988776652 25799999999999999999999
Q ss_pred ccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCC
Q 002615 239 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 318 (900)
Q Consensus 239 R~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~ 318 (900)
|+||+||++|.+|+|.+||++|.++|.|.+++|++.++...+..++++++..+.... ...+|+++++++||.+++|.
T Consensus 449 R~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~~~i~~~~~~~L~~~~~P~ 525 (558)
T PRK12583 449 RSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAA---SEEELREFCKARIAHFKVPR 525 (558)
T ss_pred cccceeEECCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCCCC---CHHHHHHHHHhhcccCcCCc
Confidence 999999999999999999999999999999999998887666788899887654332 23689999999999999999
Q ss_pred EEEEcCCcCCCCCCCcchhhhccccc
Q 002615 319 RFVFMDSLPMTSSGKVDYASLSASTS 344 (900)
Q Consensus 319 ~~~~v~~lP~t~~GKidr~~L~~~~~ 344 (900)
.++++++||+|++||++|++|++++.
T Consensus 526 ~i~~v~~lP~t~sGK~~r~~L~~~~~ 551 (558)
T PRK12583 526 YFRFVDEFPMTVTGKVQKFRMREISI 551 (558)
T ss_pred EEEEeccCCCCCCCCccHHHHHHHHH
Confidence 99999999999999999999987654
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=368.30 Aligned_cols=317 Identities=21% Similarity=0.283 Sum_probs=265.8
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
+.+++.++|++++.+|++|+.++..++.++..|+++++.+ ..++..+++.++++++|++.++|+++..+.+.....
T Consensus 195 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 270 (515)
T TIGR03098 195 TYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVGATVVLHD----YLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWPE 270 (515)
T ss_pred HHhCCCcccEEEEECchhhHhHHHHHHHHHHcCCEEEEcC----CCCHHHHHHHHHHcCCceEecChHHHHHHHhcccCC
Confidence 3467889999999999999999999999999999999986 568999999999999999999999999887642211
Q ss_pred cCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEE
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 162 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 162 (900)
..++++|.+++||+++++.+++.+.+.++++.+++.||+||++..+.. ... .......++|+|++++.+
T Consensus 271 ---~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~-~~~-------~~~~~~~~vG~~~~~~~~ 339 (515)
T TIGR03098 271 ---SAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYL-PPE-------EVDRRPDSIGKAIPNAEV 339 (515)
T ss_pred ---CCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEec-ccc-------cccCCCCCcceecCCCEE
Confidence 236799999999999999999999999988999999999998754322 110 012245689999999999
Q ss_pred EEecCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcc
Q 002615 163 VLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 239 (900)
Q Consensus 163 ~i~d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 239 (900)
+++++++ +.++.|||+++|+.++.||+++++.+.+.|...+.. ......+.+||+|||+|+++++|++++.||
T Consensus 340 ~i~~~~~~~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR 415 (515)
T TIGR03098 340 LVLREDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPR----PGELHLPELAVWSGDTVRRDEEGFLYFVGR 415 (515)
T ss_pred EEECCCCCCCCCCCceEEEEcCchhhccccCCchhhhhhhhccCCc----cccccccccceeccceEEEcCCceEEEEec
Confidence 9998665 345679999999999999999999888877543210 000111346899999999999999999999
Q ss_pred cCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCE
Q 002615 240 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 319 (900)
Q Consensus 240 ~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~ 319 (900)
.||+||++|++|+|.+||++|.+||.|.+++|++.+++..++.++++++....... ..++++++++++|+.+++|..
T Consensus 416 ~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~---~~~~l~~~l~~~l~~~~~p~~ 492 (515)
T TIGR03098 416 RDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEEL---DRAALLAECRARLPNYMVPAL 492 (515)
T ss_pred cccceecCCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCCCC---CHHHHHHHHHhhCccccCCCE
Confidence 99999999999999999999999999999999998887777788888876543322 236799999999999999999
Q ss_pred EEEcCCcCCCCCCCcchhhhcc
Q 002615 320 FVFMDSLPMTSSGKVDYASLSA 341 (900)
Q Consensus 320 ~~~v~~lP~t~~GKidr~~L~~ 341 (900)
++++++||+|++||++|++|++
T Consensus 493 i~~v~~iP~t~~GK~~r~~L~~ 514 (515)
T TIGR03098 493 IHVRQALPRNANGKIDRKALAA 514 (515)
T ss_pred EEEeccCCCCCCCCCcHHHhcc
Confidence 9999999999999999999964
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=371.10 Aligned_cols=311 Identities=21% Similarity=0.299 Sum_probs=267.7
Q ss_pred cCCCCCCcEEEEccCcchHhHHHH-HHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 4 LYPLHGEELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 4 ~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
.+++.++|+++..+|++|..++.. ++.++..|+++++.+ ..++..+++.++++++|++.++|+++..+.......
T Consensus 206 ~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 281 (523)
T PRK08316 206 AGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILD----APDPELILRTIEAERITSFFAPPTVWISLLRHPDFD 281 (523)
T ss_pred HhCCCCCceEEEccCCchhhhHHHHHHHHHhcCceEEEec----CCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccc
Confidence 467889999999999999998865 556788999999986 468999999999999999999999999888654322
Q ss_pred cCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEE
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 162 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 162 (900)
...+++||.+++||++++.++.+.+.+.++++.+++.||+||++.+++...... ......++|+|++++++
T Consensus 282 --~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~-------~~~~~~~~G~~~~~~~~ 352 (523)
T PRK08316 282 --TRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEE-------HLRRPGSAGRPVLNVET 352 (523)
T ss_pred --cCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccc-------cccccCCcccCCCCcEE
Confidence 234689999999999999999999999998999999999999987766432111 11234678999999999
Q ss_pred EEecCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcc
Q 002615 163 VLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 239 (900)
Q Consensus 163 ~i~d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 239 (900)
+|+|+++ +.+..|||+++|+.++.||+++++.+.+.| .++||+|||+|++++||.++++||
T Consensus 353 ~i~~~~~~~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~----------------~~~~~~TGDl~~~~~~g~l~i~gR 416 (523)
T PRK08316 353 RVVDDDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAF----------------RGGWFHSGDLGVMDEEGYITVVDR 416 (523)
T ss_pred EEEcCCCCCCCCCCcceEEEECCchhhhhcCCHHHHHHHh----------------hCCCeeccceEEEcCCceEEEecc
Confidence 9998665 345679999999999999999998888776 257999999999999999999999
Q ss_pred cCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCE
Q 002615 240 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 319 (900)
Q Consensus 240 ~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~ 319 (900)
+||+||++|++|+|.+||+.|.+++.|.+++|++.+++..++.+++++++++.... ..++++++++++|+.+++|..
T Consensus 417 ~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~~~l~~~~~p~~ 493 (523)
T PRK08316 417 KKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATV---TEDELIAHCRARLAGFKVPKR 493 (523)
T ss_pred cccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCCCC---CHHHHHHHHHHhcccCCCCcE
Confidence 99999999999999999999999999999999998887777788888888755322 236788999999999999999
Q ss_pred EEEcCCcCCCCCCCcchhhhccccccc
Q 002615 320 FVFMDSLPMTSSGKVDYASLSASTSFT 346 (900)
Q Consensus 320 ~~~v~~lP~t~~GKidr~~L~~~~~~~ 346 (900)
+++++++|+|++||++|++|++.++..
T Consensus 494 i~~v~~~p~t~~gKi~r~~l~~~~~~~ 520 (523)
T PRK08316 494 VIFVDELPRNPSGKILKRELRERYAGA 520 (523)
T ss_pred EEEecCCCCCCccceeHHHHHHHHHhh
Confidence 999999999999999999999887643
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=371.85 Aligned_cols=311 Identities=21% Similarity=0.265 Sum_probs=258.3
Q ss_pred CCcEEEEccCcchHhHHHH-HHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhccCCCC
Q 002615 9 GEELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHV 87 (900)
Q Consensus 9 ~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~ 87 (900)
..++++.++|++|..++.. ++.+|..|+++++.+ ..++..+++.++++++|++.++|+++..++...........
T Consensus 226 ~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~----~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~ 301 (546)
T PLN02330 226 GQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMS----RFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLS 301 (546)
T ss_pred CceEEEEecChHHHHHHHHHHHHHhhcCCEEEEec----ccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccc
Confidence 3468899999999988764 788899999999986 67889999999999999999999999998864322111111
Q ss_pred CCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEEEEecC
Q 002615 88 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVES 167 (900)
Q Consensus 88 ~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~ 167 (900)
..++|.+++|||++++.+++.+.+.|+++++++.||+||+++++........ ........++|+|+++++++++|+
T Consensus 302 ~~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~----~~~~~~~~~vG~~~~~~~v~i~d~ 377 (546)
T PLN02330 302 KLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEK----GHGIAKKNSVGFILPNLEVKFIDP 377 (546)
T ss_pred hheeeeEEEcCCcCCHHHHHHHHHHcCCCeEEecccccccccceecCCCccc----cccccccCccccccCCcEEEEEeC
Confidence 1257999999999999999999999999999999999999865443211100 000113457899999999999974
Q ss_pred CC----CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcccCCc
Q 002615 168 DT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 243 (900)
Q Consensus 168 ~~----~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ 243 (900)
+. ++++.|||+|+|++++.||+++++.+.+.|. .++||+|||++++++||.++++||+||+
T Consensus 378 ~~~~~~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~---------------~~g~~~TGD~~~~~~dG~l~~~GR~~d~ 442 (546)
T PLN02330 378 DTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTID---------------EDGWLHTGDIGYIDDDGDIFIVDRIKEL 442 (546)
T ss_pred CCCccCCCCCceEEEEecchhhhhhccCccchhhhcc---------------CCCceecccEEEEeCCCcEEEEechHHh
Confidence 33 3467899999999999999999988876652 3689999999999999999999999999
Q ss_pred EEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCEEEEc
Q 002615 244 IKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFM 323 (900)
Q Consensus 244 ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~~~~v 323 (900)
||++|++|+|.+||++|.++|.|.+++|++.++...+..+++++++.+..... .++|++++++.|+.|++|..++++
T Consensus 443 i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~~~~v 519 (546)
T PLN02330 443 IKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAKES---EEDILNFVAANVAHYKKVRVVQFV 519 (546)
T ss_pred hhcCCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCCCCCC---HHHHHHHHHHhcccccCceEEEEe
Confidence 99999999999999999999999999999988777777888888876543222 367999999999999999999999
Q ss_pred CCcCCCCCCCcchhhhcccccc
Q 002615 324 DSLPMTSSGKVDYASLSASTSF 345 (900)
Q Consensus 324 ~~lP~t~~GKidr~~L~~~~~~ 345 (900)
++||+|++||++|++|++++..
T Consensus 520 ~~iP~t~~GK~~r~~L~~~~~~ 541 (546)
T PLN02330 520 DSIPKSLSGKIMRRLLKEKMLS 541 (546)
T ss_pred ccCCCCCCcceeHHHHHHHHHh
Confidence 9999999999999999887643
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=369.80 Aligned_cols=312 Identities=21% Similarity=0.296 Sum_probs=264.6
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
+.+++.++|+++..+|++|..++. ++.+++.|+++++.+ ..+|..+++.++++++|++.++|+++..++......
T Consensus 202 ~~~~~~~~~~~l~~~pl~~~~g~~-~~~~l~~G~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~ 276 (524)
T PRK06188 202 AEWEWPADPRFLMCTPLSHAGGAF-FLPTLLRGGTVIVLA----KFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLR 276 (524)
T ss_pred hhcCCCcCcEEEEecCchhhhhHH-HHHHHHcCCEEEEcC----CCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCcc
Confidence 457788999999999999988864 678899999999996 568999999999999999999999999988764322
Q ss_pred cCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEE
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 162 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 162 (900)
. ..++++|.+++|||++++...+.+.+.+ +..+++.||+||++..++........ ........++|+|++++.+
T Consensus 277 ~--~~l~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~---~~~~~~~~~~G~p~~g~~v 350 (524)
T PRK06188 277 T--RDLSSLETVYYGASPMSPVRLAEAIERF-GPIFAQYYGQTEAPMVITYLRKRDHD---PDDPKRLTSCGRPTPGLRV 350 (524)
T ss_pred C--CCCcceeEEEEcCCCCCHHHHHHHHHHh-CchhhheeCccccCCceeecCchhcc---ccccccCCccccccCCcEE
Confidence 2 3478999999999999999988888887 56799999999997665543221110 0112245678999999999
Q ss_pred EEecCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcc
Q 002615 163 VLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 239 (900)
Q Consensus 163 ~i~d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 239 (900)
+++|+++ +.++.|||+++|+.++.||+++++.+...| .++||+|||+++++++|.++++||
T Consensus 351 ~i~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~----------------~~g~~~TGDl~~~~~~g~~~~~GR 414 (524)
T PRK06188 351 ALLDEDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAF----------------RDGWLHTGDVAREDEDGFYYIVDR 414 (524)
T ss_pred EEEcCCCCCCCCCCeeEEEEECcchhhhhcCChHHhhhhh----------------cCCceeecceEEEcCCccEEEEec
Confidence 9998765 345679999999999999999998877665 257999999999999999999999
Q ss_pred cCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCE
Q 002615 240 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 319 (900)
Q Consensus 240 ~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~ 319 (900)
.|++||++|++|+|.+||++|.++++|.+++|++.++...+..+++++++++..... .++|++++++.++.+++|..
T Consensus 415 ~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~ 491 (524)
T PRK06188 415 KKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVD---AAELQAHVKERKGSVHAPKQ 491 (524)
T ss_pred cccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCCCC---HHHHHHHHHHhcccCCCCcE
Confidence 999999999999999999999999999999999988776677888888887543322 36799999999999999999
Q ss_pred EEEcCCcCCCCCCCcchhhhccccc
Q 002615 320 FVFMDSLPMTSSGKVDYASLSASTS 344 (900)
Q Consensus 320 ~~~v~~lP~t~~GKidr~~L~~~~~ 344 (900)
++++++||+|++||++|++|++.+.
T Consensus 492 i~~v~~~P~t~~gKi~r~~L~~~~~ 516 (524)
T PRK06188 492 VDFVDSLPLTALGKPDKKALRARYW 516 (524)
T ss_pred EEEecCCCCCccccccHHHHHHHHH
Confidence 9999999999999999999987753
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=367.58 Aligned_cols=303 Identities=18% Similarity=0.292 Sum_probs=258.4
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
+.++++++|++++.+|++|..++..++.+++.|+++++.+ ..++..+++.|+++++|++.++|+++..+.......
T Consensus 214 ~~~~~~~~~~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~----~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~ 289 (542)
T PRK06155 214 EDLEIGADDVLYTTLPLFHTNALNAFFQALLAGATYVLEP----RFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARE 289 (542)
T ss_pred HhcCCCCCCEEEEecCHHHHHHHHHHHHHHHcCceEEeeC----CCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCcc
Confidence 4578899999999999999999998999999999999986 568999999999999999999999999887654332
Q ss_pred cCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEE
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 162 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 162 (900)
. ...+++|.++.|| +++.+.+.+.+.+ +++++|.||+||++..++... .......+|.|++++.+
T Consensus 290 ~--~~~~~l~~~~~g~--~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~----------~~~~~~~vG~~~~~~~~ 354 (542)
T PRK06155 290 S--DRAHRVRVALGPG--VPAALHAAFRERF-GVDLLDGYGSTETNFVIAVTH----------GSQRPGSMGRLAPGFEA 354 (542)
T ss_pred c--cccCceEEEEEcC--CCHHHHHHHHHHc-CCCEEeeecccccCccccCCC----------CCCCCCCcCccCCCceE
Confidence 2 2356888877555 5788889998887 789999999999987654321 01245678999999999
Q ss_pred EEecCCCC---CCCccEEEEccc---cccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEE
Q 002615 163 VLVESDTV---KPDEGEIYAGGL---CLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVF 236 (900)
Q Consensus 163 ~i~d~~~~---~~~~GEl~v~g~---~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~ 236 (900)
+|+|+++. .+..|||+++|+ +++.||+++++.+.+.| .++||+|||+|++++||+++|
T Consensus 355 ~i~d~~~~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~----------------~~~~~~TGD~~~~~~dG~l~i 418 (542)
T PRK06155 355 RVVDEHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAW----------------RNLWFHTGDRVVRDADGWFRF 418 (542)
T ss_pred EEECCCCCCCCCCCceEEEEecCCccccchhhcCCHHHHHHhh----------------cCCcEeccceEEEcCCceEEE
Confidence 99987653 456799999998 69999999998887766 258999999999999999999
Q ss_pred EcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCcc
Q 002615 237 LGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMI 316 (900)
Q Consensus 237 ~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 316 (900)
+||+||+||++|++|+|.+||++|.+||+|.+++|++.++...+..+.++++++.+... ...+++++++++|+.+++
T Consensus 419 ~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~l~~~~~ 495 (542)
T PRK06155 419 VDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTAL---EPVALVRHCEPRLAYFAV 495 (542)
T ss_pred EecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCCC---CHHHHHHHHHhhCcCccC
Confidence 99999999999999999999999999999999999998877666677888887654332 236899999999999999
Q ss_pred CCEEEEcCCcCCCCCCCcchhhhcccc
Q 002615 317 PNRFVFMDSLPMTSSGKVDYASLSAST 343 (900)
Q Consensus 317 P~~~~~v~~lP~t~~GKidr~~L~~~~ 343 (900)
|..|++++++|+|++|||+|++|++..
T Consensus 496 P~~i~~~~~iP~t~~GKi~r~~l~~~~ 522 (542)
T PRK06155 496 PRYVEFVAALPKTENGKVQKFVLREQG 522 (542)
T ss_pred CcEEEEeccCCCCcccceeHHHHHhhc
Confidence 999999999999999999999998754
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=371.00 Aligned_cols=320 Identities=18% Similarity=0.255 Sum_probs=249.2
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCch---hhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHH
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPII---ELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPAL 79 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~---~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~ 79 (900)
+.+++.++|+.+..+|++|..+ +..|+++++++.. ....++..+++.|+++++|+++++|++++.+.+..
T Consensus 208 ~~~~~~~~~~~~~~~pl~~~~~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 280 (552)
T PRK09274 208 EDYGIEPGEIDLPTFPLFALFG-------PALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYG 280 (552)
T ss_pred HHhCCCCCceeeeccCHHHhhh-------hhhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHh
Confidence 3568899999999999876433 4568888886421 12468899999999999999999999999998765
Q ss_pred hhccCCCCCCCcCEEEEeccCCChhhHHHHHhhCC-CceEEeecCccccccccceecccCCccc-cccCCCCcceeeecc
Q 002615 80 QSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFP-NISILNLYGSTEVSGDCTYFDCKRLPSI-LEMSTLKSVPIGLPI 157 (900)
Q Consensus 80 ~~~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~p~ 157 (900)
.... .++++||.+++|||++++++.+.+.+.++ ++++++.||+||++++++.......... .........++|+|+
T Consensus 281 ~~~~--~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~ 358 (552)
T PRK09274 281 EANG--IKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPV 358 (552)
T ss_pred hhcC--CCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccC
Confidence 4322 34789999999999999999999999986 4899999999999876543221100000 000111234789999
Q ss_pred CCcEEEEecCCC------------CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCce
Q 002615 158 SNCDIVLVESDT------------VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDF 225 (900)
Q Consensus 158 ~~~~~~i~d~~~------------~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl 225 (900)
++++++|+|+.+ +.++.|||+++|+.++.||+++|+.+...|.... .+..||+|||+
T Consensus 359 ~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~-----------~g~~w~~TGDl 427 (552)
T PRK09274 359 DGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDG-----------QGDVWHRMGDL 427 (552)
T ss_pred CCceEEEEeccccccccccccccCCCCCeeEEEEecCcccccccCChHHhhhhhcccC-----------CCCcEEEcCCE
Confidence 999999997421 3456799999999999999999998887664311 12259999999
Q ss_pred EEEccCCcEEEEcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCch-HHHHHHHH
Q 002615 226 ARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSS-EIFLSSIK 304 (900)
Q Consensus 226 ~~~~~~G~l~~~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~-~~~~~~l~ 304 (900)
|++++||+++|+||+||+||++|++|+|.|||++|.+||.|.+|+|++.++.. +..++++|++.++.... +.+.++++
T Consensus 428 g~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~l~ 506 (552)
T PRK09274 428 GYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGVKRSALVGVGVPG-AQRPVLCVELEPGVACSKSALYQELR 506 (552)
T ss_pred EEEccCCcEEEEeccCCeEEECCEEECcHHHHHHHHhCcccceeEEEEeCCCC-CceEEEEEEccCccccchHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999987754 45678888877654322 22345555
Q ss_pred HHHHhhCCCCccCCEEEEcCCcCCC--CCCCcchhhhccccc
Q 002615 305 SWVSSKLPLAMIPNRFVFMDSLPMT--SSGKVDYASLSASTS 344 (900)
Q Consensus 305 ~~l~~~l~~~~~P~~~~~v~~lP~t--~~GKidr~~L~~~~~ 344 (900)
++++.. +.++.|..++++++||+| ++|||||++|+++..
T Consensus 507 ~~l~~~-~~~~~~~~~~~~~~lP~t~~~~GKi~r~~L~~~~~ 547 (552)
T PRK09274 507 ALAAAH-PHTAGIERFLIHPSFPVDIRHNAKIFREKLAVWAA 547 (552)
T ss_pred HHHHhc-CCCcceeEEeccCCCCccccccccccHHHHHHHHH
Confidence 555433 556788999999999999 799999999987644
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=378.05 Aligned_cols=314 Identities=18% Similarity=0.181 Sum_probs=247.8
Q ss_pred CCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhccC-
Q 002615 6 PLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHN- 84 (900)
Q Consensus 6 ~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~~- 84 (900)
+++++|++++.+|++|.++...++.+++.|+++++.+ .++..+++.|+++++|+++++|++++.+.........
T Consensus 265 ~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~-----~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~ 339 (666)
T PLN02614 265 ALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWR-----GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSD 339 (666)
T ss_pred CCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeC-----CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhc
Confidence 6789999999999999998866667788999998874 4788999999999999999999999988753211000
Q ss_pred ----------------------------C--------------CCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeec
Q 002615 85 ----------------------------M--------------HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLY 122 (900)
Q Consensus 85 ----------------------------~--------------~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~Y 122 (900)
. ...++||.+++||+++++.+ ..+.+.++++.+++.|
T Consensus 340 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~~~Y 418 (666)
T PLN02614 340 GGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQGY 418 (666)
T ss_pred cCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEEeeC
Confidence 0 00168999999999999875 6677777678999999
Q ss_pred CccccccccceecccCCccccccCCCCcceeeeccCCcEEEEec-CC-----CCCCCccEEEEccccccccccCCCCCCc
Q 002615 123 GSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE-SD-----TVKPDEGEIYAGGLCLSNGYFSESTFMP 196 (900)
Q Consensus 123 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~-----~~~~~~GEl~v~g~~~~~gY~~~~~~~~ 196 (900)
|+||+++.++..... ......++|+|+++++++|+| ++ .++++.|||+|+|++++.|||++|+.|+
T Consensus 419 G~TE~~~~~~~~~~~--------~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~ 490 (666)
T PLN02614 419 GLTESCAGTFVSLPD--------ELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTK 490 (666)
T ss_pred chHhhhhheeeeccc--------cCCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHHHhh
Confidence 999987644322110 011346799999999999987 22 1345679999999999999999999999
Q ss_pred cchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcccCCcEEE-CceeeChHHHHHHHhCCCCeeEEEEEEee
Q 002615 197 SEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKI-NGQRMALEEIEHTLRGHPDVVDTAVVSHK 275 (900)
Q Consensus 197 ~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~rv~~~~iE~~l~~~~~v~~~~v~~~~ 275 (900)
+.|. ++||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||.|.+++|++..
T Consensus 491 ~~f~----------------dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~ 554 (666)
T PLN02614 491 EVLI----------------DGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNS 554 (666)
T ss_pred hhhc----------------cCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecC
Confidence 8872 579999999999999999999999999997 79999999999999999999999999976
Q ss_pred cCCceEEEEEEEEecCCC-----------C------chHHHHHHHHHHH-----HhhCCCCccCCEEEEcCC-c-----C
Q 002615 276 HQGELVILVAFIVLKEKK-----------T------SSEIFLSSIKSWV-----SSKLPLAMIPNRFVFMDS-L-----P 327 (900)
Q Consensus 276 ~~~~~~~l~~~v~~~~~~-----------~------~~~~~~~~l~~~l-----~~~l~~~~~P~~~~~v~~-l-----P 327 (900)
... .++|+|++.... . ..+...+.|.+.+ ++.|+.|.+++.|.++++ | .
T Consensus 555 ~~~---~l~alvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~ 631 (666)
T PLN02614 555 FES---FLVAIANPNQQILERWAAENGVSGDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDL 631 (666)
T ss_pred Ccc---eEEEEEeCCHHHHHHHHHhcCCCcCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCc
Confidence 422 688888875321 0 0112223333333 356999999999998874 3 4
Q ss_pred CCCCCCcchhhhccccccccccccC
Q 002615 328 MTSSGKVDYASLSASTSFTISAQHD 352 (900)
Q Consensus 328 ~t~~GKidr~~L~~~~~~~~~~~~~ 352 (900)
+|+++|+.|..+.+.|+..++..|.
T Consensus 632 lTpt~K~kR~~i~~~y~~~i~~ly~ 656 (666)
T PLN02614 632 LTPTFKKKRPQLLKYYQSVIDEMYK 656 (666)
T ss_pred CCHhhhhhHHHHHHHHHHHHHHHHH
Confidence 8999999999999988877655543
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=367.53 Aligned_cols=314 Identities=21% Similarity=0.255 Sum_probs=258.6
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
..++++++|+++..+|++|..++..++.++..|++++++++ ..++..+++.++++++|++.++|+++..+++.....
T Consensus 212 ~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~ 288 (539)
T PRK07008 212 DAMGLSARDAVLPVVPMFHVNAWGLPYSAPLTGAKLVLPGP---DLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREA 288 (539)
T ss_pred cccCCCCCceEEecCchHHhhhHHHHHHHHhcCceEEEecC---CcCHHHHHHHHHHcCCEEEEechHHHHHHHhccccc
Confidence 36788899999999999998877667888999999999753 468899999999999999999999999988754432
Q ss_pred cCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCc-ccccc-CCCCcceeeeccCCc
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLP-SILEM-STLKSVPIGLPISNC 160 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~-~~~~~-~~~~~~~~G~p~~~~ 160 (900)
...+++||.+++||+++++.+++.+.+.+ ++.+++.||+||++..++........ ..... ......++|+|++++
T Consensus 289 --~~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~ 365 (539)
T PRK07008 289 --GLRFSTLRRTVIGGSACPPAMIRTFEDEY-GVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGV 365 (539)
T ss_pred --CCCcccceEEEEcCCCCCHHHHHHHHHHh-CCceecccccccccccceecccccccccCCchhhhhhcccCCccccce
Confidence 23468999999999999999999998888 78999999999998755433211000 00000 001235789999999
Q ss_pred EEEEecCCCCC---C--CccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEE
Q 002615 161 DIVLVESDTVK---P--DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLV 235 (900)
Q Consensus 161 ~~~i~d~~~~~---~--~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~ 235 (900)
.++|+|+++.+ + ..|||+++|+.++.||+++++ ..| .++||+|||++++++||.++
T Consensus 366 ~~~i~d~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~----------------~~g~~~TGD~~~~~~dg~l~ 426 (539)
T PRK07008 366 DMKIVGDDGRELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPL----------------VDGWFPTGDVATIDADGFMQ 426 (539)
T ss_pred EEEEECCCCCccCCCCCcceEEEEeCCccchhhcCChh---hhh----------------cCCCcccCceEEEcCCCcEE
Confidence 99999876532 1 359999999999999999873 222 14799999999999999999
Q ss_pred EEcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCc
Q 002615 236 FLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAM 315 (900)
Q Consensus 236 ~~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 315 (900)
++||+||+||++|++|+|.|||+++..+|.|.++++++.++...++.++++++..+.... ..++++++++++|+.|+
T Consensus 427 ~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~~~l~~~~ 503 (539)
T PRK07008 427 ITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAEV---TREELLAFYEGKVAKWW 503 (539)
T ss_pred EeecccCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCCCcc---CHHHHHHHHHhhccccc
Confidence 999999999999999999999999999999999999998877666677888876654322 23689999999999999
Q ss_pred cCCEEEEcCCcCCCCCCCcchhhhccccc
Q 002615 316 IPNRFVFMDSLPMTSSGKVDYASLSASTS 344 (900)
Q Consensus 316 ~P~~~~~v~~lP~t~~GKidr~~L~~~~~ 344 (900)
+|..|+++++||+|++||++|++|++...
T Consensus 504 ~P~~i~~v~~lP~t~sgKi~r~~l~~~~~ 532 (539)
T PRK07008 504 IPDDVVFVDAIPHTATGKLQKLKLREQFR 532 (539)
T ss_pred CCeEEEEecCCCCCCccceeHHHHHHHHH
Confidence 99999999999999999999999987544
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=365.91 Aligned_cols=308 Identities=18% Similarity=0.223 Sum_probs=265.2
Q ss_pred CCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhccCCCC
Q 002615 8 HGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHV 87 (900)
Q Consensus 8 ~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~ 87 (900)
..+++++..+|++|..++...+.++..|+++++.+ ..++..+++.++++++|++.++|+++..+++.........+
T Consensus 185 ~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~ 260 (502)
T PRK08276 185 GPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVME----KFDAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVRARYD 260 (502)
T ss_pred CCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcC----CCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCccccCCCCC
Confidence 46889999999999999888888999999999886 57899999999999999999999999999875433323345
Q ss_pred CCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEEEEecC
Q 002615 88 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVES 167 (900)
Q Consensus 88 ~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~ 167 (900)
++++|.+++|||+++.++++.+.+.+ +..+++.||+||++.+++... .. ......++|+|+ ++.++++|+
T Consensus 261 ~~~lr~i~~~g~~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~-~~-------~~~~~~~~G~~~-~~~~~i~d~ 330 (502)
T PRK08276 261 VSSLRVAIHAAAPCPVEVKRAMIDWW-GPIIHEYYASSEGGGVTVITS-ED-------WLAHPGSVGKAV-LGEVRILDE 330 (502)
T ss_pred cccceEEEecCCCCCHHHHHHHHHHh-CcHhhhhcccccccceeEecC-cc-------ccccCCCcceec-ccEEEEECC
Confidence 78999999999999999999999988 678999999999987554321 11 011345789999 889999986
Q ss_pred CCC---CCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcccCCcE
Q 002615 168 DTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTI 244 (900)
Q Consensus 168 ~~~---~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~i 244 (900)
++. .++.|||+++|+.++.||+++++.+.+.|.. ++||+|||+++++++|.+++.||+|++|
T Consensus 331 ~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~---------------~~~~~TGD~~~~~~~g~~~~~GR~~~~i 395 (502)
T PRK08276 331 DGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNP---------------HGWVTVGDVGYLDEDGYLYLTDRKSDMI 395 (502)
T ss_pred CCCCCcCCCceEEEEECCCccchhcCCHHHHHHHhcC---------------CCceeecceEEEcCCcCEEEeccCcceE
Confidence 653 4567999999999999999999988877743 4899999999999999999999999999
Q ss_pred EECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCEEEEcC
Q 002615 245 KINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMD 324 (900)
Q Consensus 245 k~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~~~~v~ 324 (900)
|++|++|++.+||.+|+++|.|.+++|++..+...++.++++++++......+...++++++++++|+.+++|..+++++
T Consensus 396 ~~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~~~ 475 (502)
T PRK08276 396 ISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAGDALAAELIAWLRGRLAHYKCPRSIDFED 475 (502)
T ss_pred EeCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCCCCChhhHHHHHHHHHhhccCCCCCcEEEEec
Confidence 99999999999999999999999999999888777778999999876554444556689999999999999999999999
Q ss_pred CcCCCCCCCcchhhhccccc
Q 002615 325 SLPMTSSGKVDYASLSASTS 344 (900)
Q Consensus 325 ~lP~t~~GKidr~~L~~~~~ 344 (900)
+||+|++||++|++|++.+.
T Consensus 476 ~lP~t~~GKi~r~~L~~~~~ 495 (502)
T PRK08276 476 ELPRTPTGKLYKRRLRDRYW 495 (502)
T ss_pred CCCCCcccchhHHHHHHHHH
Confidence 99999999999999987654
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-39 Score=369.27 Aligned_cols=313 Identities=19% Similarity=0.278 Sum_probs=258.8
Q ss_pred CCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhccCC
Q 002615 6 PLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNM 85 (900)
Q Consensus 6 ~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~~~ 85 (900)
+++++|+++..+|++|..++..++ .++.|++.++++.. ..++..+++.|+++++|++.++|++++.+....... .
T Consensus 202 ~~~~~d~~l~~~p~~~~~~~~~~~-~~~~g~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--~ 276 (528)
T PRK07470 202 GTTEQDASLVVAPLSHGAGIHQLC-QVARGAATVLLPSE--RFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVD--R 276 (528)
T ss_pred CCCcccEEEEeccchhHHHHHHHH-HHhcCceEEEeccc--CcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcC--C
Confidence 567889999999999999987665 57788888776422 468899999999999999999999999987654322 2
Q ss_pred CCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEEEEe
Q 002615 86 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 165 (900)
Q Consensus 86 ~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 165 (900)
.++++||.+++||+++++.+.+.+.+.+ +..+++.||+||+++.++..... .............++|+|++++.++++
T Consensus 277 ~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~~~YG~TE~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~~g~~~~i~ 354 (528)
T PRK07470 277 YDHSSLRYVIYAGAPMYRADQKRALAKL-GKVLVQYFGLGEVTGNITVLPPA-LHDAEDGPDARIGTCGFERTGMEVQIQ 354 (528)
T ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHHh-CcHHHHhCCCcccCCceeecchh-hccccccccceeeccCcccCCcEEEEE
Confidence 3468999999999999999999998887 57899999999998765533211 000000012234578999999999999
Q ss_pred cCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcccCC
Q 002615 166 ESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 242 (900)
Q Consensus 166 d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 242 (900)
|+++ +.++.|||+++|+.++.||+++++.+...| .++||+|||+++++++|+++++||+||
T Consensus 355 d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~----------------~~~~~~TGDl~~~~~~g~l~~~GR~dd 418 (528)
T PRK07470 355 DDEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF----------------RDGWFRTGDLGHLDARGFLYITGRASD 418 (528)
T ss_pred CCCCCCCCCCCceEEEEeCCccchhhcCCHHHHHhhh----------------cCCcEecceeEEEccCCeEEEeCCccc
Confidence 8765 345679999999999999999998887766 257999999999999999999999999
Q ss_pred cEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCEEEE
Q 002615 243 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 322 (900)
Q Consensus 243 ~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~~~~ 322 (900)
+||++|+||+|.+||++|.+++.|.+++|++.++...+..++++++..+.... ..+++++++++.||.|++|..+++
T Consensus 419 ~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~l~~~~~P~~~~~ 495 (528)
T PRK07470 419 MYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPV---DEAELLAWLDGKVARYKLPKRFFF 495 (528)
T ss_pred eEEeCCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCCCC---CHHHHHHHHHHhhhcCCCCcEEEE
Confidence 99999999999999999999999999999998887666677888887654322 236899999999999999999999
Q ss_pred cCCcCCCCCCCcchhhhccccc
Q 002615 323 MDSLPMTSSGKVDYASLSASTS 344 (900)
Q Consensus 323 v~~lP~t~~GKidr~~L~~~~~ 344 (900)
+++||+|++||++|+.|++.++
T Consensus 496 ~~~iP~t~~GKi~r~~l~~~~~ 517 (528)
T PRK07470 496 WDALPKSGYGKITKKMVREELE 517 (528)
T ss_pred eccCCCCCcccccHHHHHHHHH
Confidence 9999999999999999976544
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=362.08 Aligned_cols=321 Identities=26% Similarity=0.422 Sum_probs=269.4
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
+.+++.++|+++...|++|+.++..++.+|..|+++++++ .....++..+++.++++++|++.++|++++.+.......
T Consensus 177 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~v~~~-~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~ 255 (503)
T PRK04813 177 EDFALPEGPQFLNQAPYSFDLSVMDLYPTLASGGTLVALP-KDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFN 255 (503)
T ss_pred HHcCCCcCceeeecCCcchhHhHHHHHHHHhcCCEEEEcC-hhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccC
Confidence 3467889999999999999999999999999999999985 444578999999999999999999999998876543221
Q ss_pred cCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEE
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 162 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 162 (900)
...++++|.++++|+++++.+.+.+.+.+++..+++.||+||++..++....... ........++|+|.+++++
T Consensus 256 --~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~ 329 (503)
T PRK04813 256 --EEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDE----MLDQYKRLPIGYAKPDSPL 329 (503)
T ss_pred --cccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEeccc----ccccCCCCcccccCCCCEE
Confidence 2346899999999999999999999999989999999999999765543221110 0112345679999999999
Q ss_pred EEecCCCC---CCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcc
Q 002615 163 VLVESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 239 (900)
Q Consensus 163 ~i~d~~~~---~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 239 (900)
+|+|+++. .++.|||+++|+.++.||+++++.+.+.|... .+.+||+|||++++ ++|.+++.||
T Consensus 330 ~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~------------~g~~~~~tGD~~~~-~~g~~~~~GR 396 (503)
T PRK04813 330 LIIDEEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTF------------DGQPAYHTGDAGYL-EDGLLFYQGR 396 (503)
T ss_pred EEECCCCCCCCCCCceEEEEeccccccccCCChhHhHHhhccC------------CCceeEECCceEEe-eCCeEEEecc
Confidence 99987663 45679999999999999999999888777432 24579999999999 9999999999
Q ss_pred cCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCC-CchHHHHHHHHHHHHhhCCCCccCC
Q 002615 240 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKK-TSSEIFLSSIKSWVSSKLPLAMIPN 318 (900)
Q Consensus 240 ~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~-~~~~~~~~~l~~~l~~~l~~~~~P~ 318 (900)
.||+||++|++|+|.+||+.+.++|.|.+++|++..+....+.+++++++.+.. .....+.++++++++++++.+++|.
T Consensus 397 ~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~ 476 (503)
T PRK04813 397 IDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFEREFELTKAIKKELKERLMEYMIPR 476 (503)
T ss_pred ccceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEeccccccccchhHHHHHHHHHhhCccccCCe
Confidence 999999999999999999999999999999999877666667788888876542 2222445679999999999999999
Q ss_pred EEEEcCCcCCCCCCCcchhhhcccc
Q 002615 319 RFVFMDSLPMTSSGKVDYASLSAST 343 (900)
Q Consensus 319 ~~~~v~~lP~t~~GKidr~~L~~~~ 343 (900)
.++++++||+|++||++|++|++.+
T Consensus 477 ~i~~~~~~P~t~~gKv~r~~l~~~~ 501 (503)
T PRK04813 477 KFIYRDSLPLTPNGKIDRKALIEEV 501 (503)
T ss_pred EEEEeccCCCCCCCCCcHHHHHHHh
Confidence 9999999999999999999998654
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=370.21 Aligned_cols=302 Identities=23% Similarity=0.306 Sum_probs=259.9
Q ss_pred CCcEEEEccCcchHhHHHH-HHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhccCCCC
Q 002615 9 GEELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHV 87 (900)
Q Consensus 9 ~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~ 87 (900)
.+|+++..+|++|..++.. ++.++..|+++++.+ ..++..+++.|+++++|++.++|++++.+.+...... ..
T Consensus 261 ~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~----~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~--~~ 334 (573)
T PRK05605 261 GPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLP----APDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERG--VD 334 (573)
T ss_pred CCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeC----CCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccC--CC
Confidence 4789999999999988744 778899999999986 5688999999999999999999999999987544322 33
Q ss_pred CCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEEEEecC
Q 002615 88 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVES 167 (900)
Q Consensus 88 ~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~ 167 (900)
+++||.+++||+++++++.+.+.+.+ +..+++.||+||++++++..... ......++|+|++++.++|+|+
T Consensus 335 ~~~lr~i~~gg~~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~--------~~~~~~~~G~~~~~~~~~i~d~ 405 (573)
T PRK05605 335 LSGVRNAFSGAMALPVSTVELWEKLT-GGLLVEGYGLTETSPIIVGNPMS--------DDRRPGYVGVPFPDTEVRIVDP 405 (573)
T ss_pred chhccEEEECCCcCCHHHHHHHHHHh-CCCeecccccchhchhhhcCCcc--------cCCcCCccccCCCCCEEEEEcC
Confidence 68999999999999999999998876 78899999999998766543211 1123568999999999999986
Q ss_pred CC-----CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcccCC
Q 002615 168 DT-----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 242 (900)
Q Consensus 168 ~~-----~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 242 (900)
++ +.+..|||+++|+.++.||+++++.+.+.|. .+||+|||+++++++|.++++||+||
T Consensus 406 ~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~----------------~g~~~TGD~~~~~~~g~l~i~gR~dd 469 (573)
T PRK05605 406 EDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFL----------------DGWFRTGDVVVMEEDGFIRIVDRIKE 469 (573)
T ss_pred CCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhccc----------------CCCcccCCEEEEcCCCcEEEEecccc
Confidence 54 3456799999999999999999988887662 35999999999999999999999999
Q ss_pred cEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCEEEE
Q 002615 243 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 322 (900)
Q Consensus 243 ~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~~~~ 322 (900)
+||++|++|+|.+||+++.+|+.|.+++|++.++...+..+++++++.++.... .++|+++++++|+.+++|..+++
T Consensus 470 ~i~~~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~ 546 (573)
T PRK05605 470 LIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALD---PEGLRAYCREHLTRYKVPRRFYH 546 (573)
T ss_pred ceeeCCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCCCCC---HHHHHHHHHHhCccccCCcEEEE
Confidence 999999999999999999999999999999988777777889999887653322 36899999999999999999999
Q ss_pred cCCcCCCCCCCcchhhhccccc
Q 002615 323 MDSLPMTSSGKVDYASLSASTS 344 (900)
Q Consensus 323 v~~lP~t~~GKidr~~L~~~~~ 344 (900)
+++||+|++||++|++|+++..
T Consensus 547 ~~~iP~t~~GKi~r~~L~~~~~ 568 (573)
T PRK05605 547 VDELPRDQLGKVRRREVREELL 568 (573)
T ss_pred eccCCCCCcccccHHHHHHHHH
Confidence 9999999999999999987653
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=403.31 Aligned_cols=318 Identities=22% Similarity=0.302 Sum_probs=263.6
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHH-HHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
+.++++++|+++..+|++|..++.. ++.+++.|+++++.+. ..++..+++.++++++|++.++|++++.+.+....
T Consensus 816 ~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 892 (1146)
T PRK08633 816 DVFNLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPD---PTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKL 892 (1146)
T ss_pred HhcCCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEEEeCC---CCCHHHHHHHHHHcCCeEEEecHHHHHHHHhcccc
Confidence 4578899999999999999999866 8899999999998752 46889999999999999999999999988764322
Q ss_pred ccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCcccc-ccCCCCcceeeeccCCc
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSIL-EMSTLKSVPIGLPISNC 160 (900)
Q Consensus 82 ~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~p~~~~ 160 (900)
. ..+++++|.+++|||++++++.+.+++.+ ++++++.||+||++++++........... ........++|+|++++
T Consensus 893 ~--~~~~~~lr~~~~gg~~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~ 969 (1146)
T PRK08633 893 H--PLMFASLRLVVAGAEKLKPEVADAFEEKF-GIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGV 969 (1146)
T ss_pred C--cccCCCeeeEEEcCCcCCHHHHHHHHHHh-CCCeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCC
Confidence 2 23468999999999999999999999988 78999999999998766543211100000 11122456899999999
Q ss_pred EEEEecCCC----CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEE
Q 002615 161 DIVLVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVF 236 (900)
Q Consensus 161 ~~~i~d~~~----~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~ 236 (900)
+++++|+++ ++++.|||+++|+.++.||+++|+.+.+.|... ++++||+|||++++++||++++
T Consensus 970 ~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~------------~~~~~~~TGD~~~~~~~g~l~~ 1037 (1146)
T PRK08633 970 AVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDI------------DGIGWYVTGDKGHLDEDGFLTI 1037 (1146)
T ss_pred EEEEEcCCCCccCCCCCceEEEEcCCCccccccCCccchHHHhhcC------------CCCCeEECCCEEEEcCCceEEE
Confidence 999998643 456789999999999999999999998877431 1468999999999999999999
Q ss_pred EcccCCcEEECceeeChHHHHHHHhCCC--CeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHh-hCCC
Q 002615 237 LGRKDRTIKINGQRMALEEIEHTLRGHP--DVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSS-KLPL 313 (900)
Q Consensus 237 ~GR~dd~ik~~G~rv~~~~iE~~l~~~~--~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~-~l~~ 313 (900)
+||.||+||++|++|+|.|||++|.+|| .+.+++|++.+++..++.++++++... . ..+++++++++ .+|.
T Consensus 1038 ~gR~~d~i~~~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~~--~----~~~~l~~~~~~~~l~~ 1111 (1146)
T PRK08633 1038 TDRYSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCGA--E----DVEELKRAIKESGLPN 1111 (1146)
T ss_pred EecccchhhhCcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEecCc--c----CHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999 466789998888877788888887621 1 23567777764 6999
Q ss_pred CccCCEEEEcCCcCCCCCCCcchhhhccccc
Q 002615 314 AMIPNRFVFMDSLPMTSSGKVDYASLSASTS 344 (900)
Q Consensus 314 ~~~P~~~~~v~~lP~t~~GKidr~~L~~~~~ 344 (900)
|++|..+++++++|+|++||+||++|++..+
T Consensus 1112 ~~~P~~i~~~~~iP~t~~GKi~r~~L~~~~~ 1142 (1146)
T PRK08633 1112 LWKPSRYFKVEALPLLGSGKLDLKGLKELAL 1142 (1146)
T ss_pred ccCCcEEEEecCcCCCCCCCCcHHHHHHHHH
Confidence 9999999999999999999999999987543
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=361.93 Aligned_cols=310 Identities=19% Similarity=0.197 Sum_probs=261.9
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
+.+++.++|+++..+|++|..+....+.++..|+++++.+ ..++..+++.++++++|++.++|++++.++......
T Consensus 189 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~ 264 (509)
T PRK12406 189 LIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQP----RFDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEV 264 (509)
T ss_pred hhcCCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEcc----CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhh
Confidence 4678899999999999999988777777889999999985 468899999999999999999999999988644332
Q ss_pred cCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEE
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 162 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 162 (900)
....++++||.++.||+++++++++.+.+.+ ++.+++.||+||++.+++... .. ....+.++|+|++++.+
T Consensus 265 ~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~-~~-------~~~~~~~~G~~~~~~~~ 335 (509)
T PRK12406 265 RAKYDVSSLRHVIHAAAPCPADVKRAMIEWW-GPVIYEYYGSTESGAVTFATS-ED-------ALSHPGTVGKAAPGAEL 335 (509)
T ss_pred cccCCCCceeEEEEcCCCCCHHHHHHHHHHc-CCcEEeeccccccCceEecCc-cc-------ccccCCCcCccCCCcEE
Confidence 2234468999999999999999999999887 688999999999987554221 10 11134578999999999
Q ss_pred EEecCCC---CCCCccEEEEccccccc-cccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEc
Q 002615 163 VLVESDT---VKPDEGEIYAGGLCLSN-GYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 238 (900)
Q Consensus 163 ~i~d~~~---~~~~~GEl~v~g~~~~~-gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 238 (900)
+++|+++ +.+..|||+++|+.++. +|+++|+.+...+ .++||+|||+++++++|.++++|
T Consensus 336 ~i~d~~~~~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~----------------~~~~~~TGD~~~~~~~g~~~~~G 399 (509)
T PRK12406 336 RFVDEDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEID----------------RGGFITSGDVGYLDADGYLFLCD 399 (509)
T ss_pred EEECCCCCCCCCCCceEEEEECCccccccccCCchhccccc----------------CCCCeEEccEEEEcCCceEEEee
Confidence 9998765 34567999999998765 8999888776543 36799999999999999999999
Q ss_pred ccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCC
Q 002615 239 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 318 (900)
Q Consensus 239 R~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~ 318 (900)
|.||+||++|++|+|.+||+.|.++|.|.++++++.++...++.+++++++...... ..++|++.+++.|+.|++|.
T Consensus 400 R~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~l~~~l~~~~~P~ 476 (509)
T PRK12406 400 RKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGATL---DEADIRAQLKARLAGYKVPK 476 (509)
T ss_pred cccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCCCCC---CHHHHHHHHHHhcccCCCCc
Confidence 999999999999999999999999999999999998887666778888887654322 24689999999999999999
Q ss_pred EEEEcCCcCCCCCCCcchhhhccccc
Q 002615 319 RFVFMDSLPMTSSGKVDYASLSASTS 344 (900)
Q Consensus 319 ~~~~v~~lP~t~~GKidr~~L~~~~~ 344 (900)
.+++++++|+|++||++|++|++.+.
T Consensus 477 ~i~~~~~iP~t~~GK~~r~~L~~~~~ 502 (509)
T PRK12406 477 HIEIMAELPREDSGKIFKRRLRDPYW 502 (509)
T ss_pred EEEEeccCCCCCccchhHHHHHHHHH
Confidence 99999999999999999999986543
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=383.97 Aligned_cols=300 Identities=14% Similarity=0.221 Sum_probs=238.1
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHHHHHHHHhCC-eEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTAC-TLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~-~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
+.++++++|++++.+|++|+.++...+.+++.|+ ++++.+ .+++..+++.|++++||+++++|++++.+++....
T Consensus 639 ~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~~----~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~ 714 (994)
T PRK07868 639 SAAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALSR----GLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAF 714 (994)
T ss_pred hhcCCCCCCeEEEecChHHHhHHHHHHHHHhccceEEEecC----CCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCC
Confidence 4568899999999999999999988665555555 455553 46899999999999999999999999998865221
Q ss_pred ccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCc-
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNC- 160 (900)
Q Consensus 82 ~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~- 160 (900)
...++++||.++ |+.+++++++.+.+.++++.++|.||+||++..++. . + .....++|+|++++
T Consensus 715 --~~~~~~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~--~---~------~~~~~svG~p~pg~~ 779 (994)
T PRK07868 715 --VLHGNHPVRLFI--GSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLAN--V---S------GAKIGSKGRPLPGAG 779 (994)
T ss_pred --ccCCCCceEEEe--cCCCCHHHHHHHHHHhCchheeeeeecccccccccc--c---C------CCCCcccCCccCCCC
Confidence 123467899876 445999999999999987899999999998754321 1 0 12456899999997
Q ss_pred EEEEe-----------cCCC-----CCCCccEEEEccccccccccCCCCCCcc--chhccCCcccccCcCCCCCcceEec
Q 002615 161 DIVLV-----------ESDT-----VKPDEGEIYAGGLCLSNGYFSESTFMPS--EYVKLHNNSICNCSVSCGSQTYFRT 222 (900)
Q Consensus 161 ~~~i~-----------d~~~-----~~~~~GEl~v~g~~~~~gY~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~~T 222 (900)
+++|. ++++ +.++.|||+++|+. |+ +|+.+.. .|. .+++||+|
T Consensus 780 ~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~----~~-~p~~t~~~~~~~--------------~~dgw~~T 840 (994)
T PRK07868 780 RVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARG----PI-DPTASVKRGVFA--------------PADTWIST 840 (994)
T ss_pred ceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCC----CC-ChhhhhHhcccc--------------cCCEEEec
Confidence 56553 2332 34677999999875 33 3433221 121 14799999
Q ss_pred CceEEEccCCcEEEEcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHH
Q 002615 223 GDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSS 302 (900)
Q Consensus 223 GDl~~~~~~G~l~~~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~ 302 (900)
||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||.|.+|+|++.+++. .+.++++|+++++.... .++
T Consensus 841 GDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~-~~~~~a~Vv~~~~~~~~---~~~ 916 (994)
T PRK07868 841 EYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALGRIGGVDLAVTYGVEVGG-RQLAVAAVTLRPGAAIT---AAD 916 (994)
T ss_pred cceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHhcCCCeeEEEEEeecCCC-CceEEEEEEeCCCCcCC---HHH
Confidence 99999999999999999999999999999999999999999999999999988765 46788999887654322 368
Q ss_pred HHHHHHhhCCCCccCCEEEEcCCcCCCCCCCcchhhhcccccc
Q 002615 303 IKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSF 345 (900)
Q Consensus 303 l~~~l~~~l~~~~~P~~~~~v~~lP~t~~GKidr~~L~~~~~~ 345 (900)
|++++++ ||.||+|+.|+++++||+|++|||+|++|++...+
T Consensus 917 L~~~l~~-l~~y~vP~~i~~v~~lP~T~sGKi~r~~L~~~~lp 958 (994)
T PRK07868 917 LTEALAS-LPVGLGPDIVHVVPEIPLSATYRPTVSALRAAGIP 958 (994)
T ss_pred HHHHHHh-CCCCcCCeEEEEeCCCCCCccccEehHHHHhcCCC
Confidence 9999986 99999999999999999999999999999876543
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=360.67 Aligned_cols=308 Identities=21% Similarity=0.248 Sum_probs=255.1
Q ss_pred cCCCCCCcEEEEccCcchHhHHHH-HHHHHHhCCeEEecCchhhhhcHHHHHHHHH--HcCeeEEEecHHHHHHHHHHHh
Q 002615 4 LYPLHGEELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQ--AYSISRLTTVPSLMRVVLPALQ 80 (900)
Q Consensus 4 ~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~--~~~vt~~~~~Ps~l~~l~~~~~ 80 (900)
.+.+.++|++++.+|++|..++.. ++.++..|+++++.+ ..++..++..+. ++++|++.++|++++.+.....
T Consensus 170 ~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~----~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~ 245 (488)
T PRK09088 170 LGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSN----GFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPG 245 (488)
T ss_pred hhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcC----CCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcC
Confidence 346788999999999999999866 677888999999875 457778888775 4899999999999998875432
Q ss_pred hccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceec-ccCCccccccCCCCcceeeeccCC
Q 002615 81 SQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFD-CKRLPSILEMSTLKSVPIGLPISN 159 (900)
Q Consensus 81 ~~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~-~~~~~~~~~~~~~~~~~~G~p~~~ 159 (900)
. ....+++||.+++||++++....+.+.+. ++.+++.||+||++....... +.. ......++|+|+++
T Consensus 246 ~--~~~~~~~l~~~~~gG~~~~~~~~~~~~~~--g~~v~~~YG~TE~~~~~~~~~~~~~-------~~~~~~~vG~~~~~ 314 (488)
T PRK09088 246 F--DAAALRHLTALFTGGAPHAAEDILGWLDD--GIPMVDGFGMSEAGTVFGMSVDCDV-------IRAKAGAAGIPTPT 314 (488)
T ss_pred c--CccccccceEEEecCCCCCHHHHHHHHHh--CCceeeeecccccccccccCCCccc-------ccccCCccccCCCC
Confidence 1 12336799999999999999888887764 788999999999986543211 110 01134679999999
Q ss_pred cEEEEecCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEE
Q 002615 160 CDIVLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVF 236 (900)
Q Consensus 160 ~~~~i~d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~ 236 (900)
+.++++|+++ +.+..|||+|+|+.++.||+++++.+.+.|. .++||+|||+|+++++|.++|
T Consensus 315 ~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~---------------~~g~~~TGDl~~~~~~g~l~i 379 (488)
T PRK09088 315 VQTRVVDDQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFT---------------GDGWFRTGDIARRDADGFFWV 379 (488)
T ss_pred cEEEEECCCCCCCcCCCceEEEEECCccchhhcCChhhhhhhhc---------------CCCCeeecceEEEcCCCcEEE
Confidence 9999998665 3456799999999999999999988876663 368999999999999999999
Q ss_pred EcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCcc
Q 002615 237 LGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMI 316 (900)
Q Consensus 237 ~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 316 (900)
+||+||+||++|++|+|.+||++|.++|.|.+++|++.+++..++..++++++++.... ..++++++++++++.|++
T Consensus 380 ~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~---~~~~l~~~~~~~l~~~~~ 456 (488)
T PRK09088 380 VDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPL---DLERIRSHLSTRLAKYKV 456 (488)
T ss_pred eccccceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCCC---CHHHHHHHHHhhCcCCCC
Confidence 99999999999999999999999999999999999998876555667788887654321 246899999999999999
Q ss_pred CCEEEEcCCcCCCCCCCcchhhhccccc
Q 002615 317 PNRFVFMDSLPMTSSGKVDYASLSASTS 344 (900)
Q Consensus 317 P~~~~~v~~lP~t~~GKidr~~L~~~~~ 344 (900)
|..++++++||+|++||++|++|++++.
T Consensus 457 p~~i~~~~~iP~t~~gKi~r~~l~~~~~ 484 (488)
T PRK09088 457 PKHLRLVDALPRTASGKLQKARLRDALA 484 (488)
T ss_pred CCEEEEcccCCCCCCCceeHHHHHHHHH
Confidence 9999999999999999999999987654
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=363.03 Aligned_cols=306 Identities=19% Similarity=0.282 Sum_probs=259.5
Q ss_pred ccCCCCCCcEEEEccCcchHhHHH-HHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQ-EFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
+.++++++|++++.+|++|..++. .++.+++.|+++++.+ ..++..+++.+. ++|++.++|+++..++.....
T Consensus 190 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~----~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~ 263 (504)
T PRK07514 190 DYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLP----KFDPDAVLALMP--RATVMMGVPTFYTRLLQEPRL 263 (504)
T ss_pred HHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECC----CCCHHHHHHHHH--hheeeecHHHHHHHHHcCCCC
Confidence 356789999999999999998874 5889999999999986 567899999883 699999999999988765322
Q ss_pred ccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcE
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161 (900)
Q Consensus 82 ~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 161 (900)
....++++|.+++||+++++++.+.|.+.+ +.++++.||+||++..++... .......++|.|++++.
T Consensus 264 --~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~---------~~~~~~~~~G~~~~~~~ 331 (504)
T PRK07514 264 --TREAAAHMRLFISGSAPLLAETHREFQERT-GHAILERYGMTETNMNTSNPY---------DGERRAGTVGFPLPGVS 331 (504)
T ss_pred --CcccccceeeEEecCCCCCHHHHHHHHHHh-CCcceeecccccccccccCCc---------cccccCcccccCCCCcE
Confidence 123468999999999999999999999887 678999999999876543211 01123467999999999
Q ss_pred EEEec-CCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEE
Q 002615 162 IVLVE-SDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFL 237 (900)
Q Consensus 162 ~~i~d-~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~ 237 (900)
++++| +++ +.++.|||+|+|++++.||+++++.+.+.|.. ++||+|||+++++++|.++++
T Consensus 332 v~i~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~---------------~~~~~TGDl~~~~~~g~~~~~ 396 (504)
T PRK07514 332 LRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRA---------------DGFFITGDLGKIDERGYVHIV 396 (504)
T ss_pred EEEEECCCCCCCCCCCceEEEEecCCccccccCCchhhhhhccc---------------CCCeeecceEEEcCCccEEEe
Confidence 99998 333 34567999999999999999999998887742 569999999999999999999
Q ss_pred cccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccC
Q 002615 238 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP 317 (900)
Q Consensus 238 GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P 317 (900)
||+||+||++|++|+|.+||+++.++++|.+++|++.++...+..++++++........ .++++++++++|+.+++|
T Consensus 397 GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~l~~~~~p 473 (504)
T PRK07514 397 GRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALD---EAAILAALKGRLARFKQP 473 (504)
T ss_pred ccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCCCC---HHHHHHHHHhhcccCCCC
Confidence 99999999999999999999999999999999999988776667788888876543322 367899999999999999
Q ss_pred CEEEEcCCcCCCCCCCcchhhhccccc
Q 002615 318 NRFVFMDSLPMTSSGKVDYASLSASTS 344 (900)
Q Consensus 318 ~~~~~v~~lP~t~~GKidr~~L~~~~~ 344 (900)
..+++++++|+|++||++|++|++.+.
T Consensus 474 ~~i~~v~~~p~t~~gK~~r~~l~~~~~ 500 (504)
T PRK07514 474 KRVFFVDELPRNTMGKVQKNLLREQYA 500 (504)
T ss_pred cEEEEeccCCCCCCcceeHHHHHHHHH
Confidence 999999999999999999999987654
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=360.27 Aligned_cols=302 Identities=19% Similarity=0.241 Sum_probs=256.0
Q ss_pred cCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhcc
Q 002615 4 LYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQH 83 (900)
Q Consensus 4 ~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~ 83 (900)
.+++.++|+++..+|++|.+++..++.++..|+++++.+ ..++..+++.++++++|.+.++|+++..+........
T Consensus 211 ~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 286 (516)
T PRK13383 211 RTRLRTGSRISVAMPMFHGLGLGMLMLTIALGGTVLTHR----HFDAEAALAQASLHRADAFTAVPVVLARILELPPRVR 286 (516)
T ss_pred hhccCCCCeEEEecCCcchhhHHHHHHHHhcCCEEEECC----CCCHHHHHHHHHHhCCcEEEecHHHHHHHHhcccccc
Confidence 456789999999999999999988899999999999875 5788999999999999999999999999876543221
Q ss_pred CCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEEE
Q 002615 84 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 163 (900)
Q Consensus 84 ~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 163 (900)
....++++|.+++||+++++++++.|.+.+ +..+++.||+||++..+.... .. ......++|+|++++.++
T Consensus 287 ~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~-~~-------~~~~~~~~G~~~~~~~~~ 357 (516)
T PRK13383 287 ARNPLPQLRVVMSSGDRLDPTLGQRFMDTY-GDILYNGYGSTEVGIGALATP-AD-------LRDAPETVGKPVAGCPVR 357 (516)
T ss_pred ccCCCCceEEEEECCCCCCHHHHHHHHHHc-Cchhhhcccccccccceeccc-cc-------cccCCCcccCCCCCcEEE
Confidence 123467999999999999999999999988 678999999999986544221 10 011345789999999999
Q ss_pred EecCCCC---CCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEccc
Q 002615 164 LVESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 240 (900)
Q Consensus 164 i~d~~~~---~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 240 (900)
|+|+++. +++.|||+++|+.++.||++++.. .+ .++||+|||+++++++|+++++||+
T Consensus 358 i~d~~~~~~~~g~~Gel~v~g~~~~~~Y~~~~~~---~~----------------~~g~~~TGDl~~~d~~G~l~i~GR~ 418 (516)
T PRK13383 358 ILDRNNRPVGPRVTGRIFVGGELAGTRYTDGGGK---AV----------------VDGMTSTGDMGYLDNAGRLFIVGRE 418 (516)
T ss_pred EECCCCCCCCCCCceEEEEecCcccccccCCchh---he----------------ecCceecceeEEEcCCccEEEeccc
Confidence 9987653 456799999999999999986531 11 2579999999999999999999999
Q ss_pred CCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCEE
Q 002615 241 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 320 (900)
Q Consensus 241 dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~~ 320 (900)
||+||++|++|+|.+||+.|.+||.|.++++++.++...++.++++++++..... ..++++++++++++.+++|..+
T Consensus 419 ~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~~---~~~~l~~~~~~~l~~~~~p~~i 495 (516)
T PRK13383 419 DDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGV---DAAQLRDYLKDRVSRFEQPRDI 495 (516)
T ss_pred cceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCC---CHHHHHHHHHHhcccCCCCcEE
Confidence 9999999999999999999999999999999998877777788889987754332 2357999999999999999999
Q ss_pred EEcCCcCCCCCCCcchhhhc
Q 002615 321 VFMDSLPMTSSGKVDYASLS 340 (900)
Q Consensus 321 ~~v~~lP~t~~GKidr~~L~ 340 (900)
+++++||+|++||++|++|+
T Consensus 496 ~~v~~iP~t~~gKi~r~~L~ 515 (516)
T PRK13383 496 NIVSSIPRNPTGKVLRKELP 515 (516)
T ss_pred EEeCCCCCCCCCcCcHHHhC
Confidence 99999999999999999984
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=364.42 Aligned_cols=313 Identities=22% Similarity=0.322 Sum_probs=268.0
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
+.+++.++|+++..+|++|..++...+.++..|+++++++. .++..+++.++++++|++.++|++++.+.......
T Consensus 201 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~ 276 (521)
T PRK06187 201 AWLKLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRR----FDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAY 276 (521)
T ss_pred HhhCCCCCCEEEEeCCchHHhhHHHHHHHHHhCCEEEecCC----CCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCC
Confidence 35788999999999999999999887779999999999863 48999999999999999999999999998766542
Q ss_pred cCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEE
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 162 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 162 (900)
...+++||.+++|||++++.+++.+.+.+ ++++++.||+||++.+++........ ........++|+|++++.+
T Consensus 277 --~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~---~~~~~~~~~~G~~~~~~~~ 350 (521)
T PRK06187 277 --FVDFSSLRLVIYGGAALPPALLREFKEKF-GIDLVQGYGMTETSPVVSVLPPEDQL---PGQWTKRRSAGRPLPGVEA 350 (521)
T ss_pred --ccCcchhhEEEEcCcCCCHHHHHHHHHHh-CcchheeeccCccCcccccCCccccc---ccccccCCccccccCCeEE
Confidence 23478999999999999999999999988 89999999999998766543221110 0001145679999999999
Q ss_pred EEecCCCC---C--CCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEE
Q 002615 163 VLVESDTV---K--PDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFL 237 (900)
Q Consensus 163 ~i~d~~~~---~--~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~ 237 (900)
+|+|+++. . +..|||+++|+.++.||+++++.+.+.|. ++||+|||+++++++|.++++
T Consensus 351 ~i~~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~----------------~~~~~tGD~~~~~~~g~~~~~ 414 (521)
T PRK06187 351 RIVDDDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETID----------------GGWLHTGDVGYIDEDGYLYIT 414 (521)
T ss_pred EEECCCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhh----------------CCceeccceEEEcCCCCEEEe
Confidence 99987663 3 56799999999999999999888777662 359999999999999999999
Q ss_pred cccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccC
Q 002615 238 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP 317 (900)
Q Consensus 238 GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P 317 (900)
||.||+||++|.+|+|.+||+.|.++++|.+++|++.+++..++.++++++++...... ..++++++++.|+.+++|
T Consensus 415 GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p 491 (521)
T PRK06187 415 DRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLD---AKELRAFLRGRLAKFKLP 491 (521)
T ss_pred ecccceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCCCCC---HHHHHHHHHHhccCCCCc
Confidence 99999999999999999999999999999999999887776667888888876654322 367899999999999999
Q ss_pred CEEEEcCCcCCCCCCCcchhhhccccc
Q 002615 318 NRFVFMDSLPMTSSGKVDYASLSASTS 344 (900)
Q Consensus 318 ~~~~~v~~lP~t~~GKidr~~L~~~~~ 344 (900)
..++++++||+|++||++|++|++++.
T Consensus 492 ~~i~~v~~~P~t~~gK~~r~~l~~~~~ 518 (521)
T PRK06187 492 KRIAFVDELPRTSVGKILKRVLREQYA 518 (521)
T ss_pred eEEEEccCCCCCCCCCeeHHHHHHHHh
Confidence 999999999999999999999988765
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=363.77 Aligned_cols=308 Identities=19% Similarity=0.260 Sum_probs=255.6
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
+.++++++|++++.+|++|.+++..++.++..|+++++.+ .+++..+++.|+++++|+++++|++++.+.+...
T Consensus 215 ~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~----~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~-- 288 (540)
T PRK06164 215 RAYGYDPGAVLLAALPFCGVFGFSTLLGALAGGAPLVCEP----VFDAARTARALRRHRVTHTFGNDEMLRRILDTAG-- 288 (540)
T ss_pred HhcCCCCCCEEEEcCCchhHHHHHHHHHHHhcCceEEecC----CCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhhc--
Confidence 4578899999999999999999999999999999999986 5788999999999999999999999999987622
Q ss_pred cCCCCCCCcCEEEEec-cCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeecc-CCc
Q 002615 83 HNMHVPSSLKLLVLSG-EVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPI-SNC 160 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gG-e~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~-~~~ 160 (900)
....++++|.+.++| .+.+..+.+.+.+. ++++++.||+||++..++...... .........|.|+ +++
T Consensus 289 -~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~------~~~~~~~~~g~~~~~~~ 359 (540)
T PRK06164 289 -ERADFPSARLFGFASFAPALGELAALARAR--GVPLTGLYGSSEVQALVALQPATD------PVSVRIEGGGRPASPEA 359 (540)
T ss_pred -ccCCCcceeeeeeccCCcchHHHHHHHhhc--CCceecceeeccccceeeccCCCC------CCcceeccCccccCCCe
Confidence 223478899887776 45556666665554 788999999999987655432211 1111234567775 789
Q ss_pred EEEEecCCC----CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEE
Q 002615 161 DIVLVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVF 236 (900)
Q Consensus 161 ~~~i~d~~~----~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~ 236 (900)
.++++|+++ +.++.|||+|+|++++.||+++|+.+.+.|.. ++||+|||+|+++++|.+++
T Consensus 360 ~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~---------------~~~~~TGDl~~~~~~g~l~~ 424 (540)
T PRK06164 360 RVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTD---------------DGYFRTGDLGYTRGDGQFVY 424 (540)
T ss_pred EEEEecCCCCcCCCCCCeeEEEEecccccccccCCchhhhhcccC---------------CCceecCCeEEEcCCceEEE
Confidence 999998543 35667999999999999999999998887743 57999999999999999999
Q ss_pred EcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCcc
Q 002615 237 LGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMI 316 (900)
Q Consensus 237 ~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 316 (900)
.||.||+||++|++|+|.+||+.|.+||.|.+++|++.... ....+++++++++.... ..++++++++++||.+++
T Consensus 425 ~GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~-~~~~~~~~vv~~~~~~~---~~~~l~~~~~~~l~~~~~ 500 (540)
T PRK06164 425 QTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATRD-GKTVPVAFVIPTDGASP---DEAGLMAACREALAGFKV 500 (540)
T ss_pred EeecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecCCC-CceeEEEEEEeCCCCCC---CHHHHHHHHHhhcccCcC
Confidence 99999999999999999999999999999999999987743 34578888887654322 246899999999999999
Q ss_pred CCEEEEcCCcCCCCCC---Ccchhhhccccc
Q 002615 317 PNRFVFMDSLPMTSSG---KVDYASLSASTS 344 (900)
Q Consensus 317 P~~~~~v~~lP~t~~G---Kidr~~L~~~~~ 344 (900)
|..|++++++|+|++| |++|++|++++.
T Consensus 501 P~~i~~~~~~P~t~~g~~~Ki~r~~L~~~~~ 531 (540)
T PRK06164 501 PARVQVVEAFPVTESANGAKIQKHRLREMAQ 531 (540)
T ss_pred CcEEEEecCCCCCCCCccccccHHHHHHHHH
Confidence 9999999999999999 999999987654
|
|
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=340.35 Aligned_cols=283 Identities=23% Similarity=0.329 Sum_probs=238.5
Q ss_pred CCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcC--eeEEEecHHHHHHHHHHHhhccCC
Q 002615 8 HGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYS--ISRLTTVPSLMRVVLPALQSQHNM 85 (900)
Q Consensus 8 ~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~--vt~~~~~Ps~l~~l~~~~~~~~~~ 85 (900)
...++++..+|++|..++..++.+++.|++++++. ....+++..+++.+++++ +++..++|+.+..++..... .
T Consensus 72 ~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~---~ 147 (358)
T PRK07824 72 GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELD-VSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAA---T 147 (358)
T ss_pred CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecC-cCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccc---c
Confidence 34578899999999999988999999999998842 112468899999999998 56777889888766543221 2
Q ss_pred CCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEEEEe
Q 002615 86 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 165 (900)
Q Consensus 86 ~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 165 (900)
..+++||.+++|||++++.+.+.+.+. ++++++.||+||++..+. ..|+|++++++++.
T Consensus 148 ~~~~~l~~i~~gG~~l~~~~~~~~~~~--~~~v~~~YG~TE~~~~~~-------------------~~G~~~~g~~v~i~ 206 (358)
T PRK07824 148 AALAELDAVLVGGGPAPAPVLDAAAAA--GINVVRTYGMSETSGGCV-------------------YDGVPLDGVRVRVE 206 (358)
T ss_pred CCcccceEEEECCCCCCHHHHHHHHhc--CCcEEecccCCccCCCcC-------------------cCceeCCCCEEEec
Confidence 346899999999999999999988764 789999999999875332 24889999999985
Q ss_pred cCCCCCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcccCCcEE
Q 002615 166 ESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIK 245 (900)
Q Consensus 166 d~~~~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik 245 (900)
+ |||+++|+.++.||+++++.+ .|. .++||+|||++++ ++|.++++||.||+||
T Consensus 207 ~--------Gei~v~g~~~~~gY~~~~~~~--~~~---------------~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~ 260 (358)
T PRK07824 207 D--------GRIALGGPTLAKGYRNPVDPD--PFA---------------EPGWFRTDDLGAL-DDGVLTVLGRADDAIS 260 (358)
T ss_pred C--------CEEEEecCccccccCCCcccc--ccc---------------CCCceecccEEEE-eCCEEEEEeccCCeEE
Confidence 3 999999999999999987643 221 2469999999999 8999999999999999
Q ss_pred ECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCEEEEcCC
Q 002615 246 INGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDS 325 (900)
Q Consensus 246 ~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~~~~v~~ 325 (900)
++|++|+|.+||++|.+||.|.+|+|++.+++..++.++++++.+.... ...++|++++++.|+.|++|..++++++
T Consensus 261 ~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~---~~~~~i~~~~~~~l~~~~~P~~i~~v~~ 337 (358)
T PRK07824 261 TGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPA---PTLEALRAHVARTLDRTAAPRELHVVDE 337 (358)
T ss_pred ECCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCCC---cCHHHHHHHHHhhCccccCCCEEEEecC
Confidence 9999999999999999999999999999888777788899887765432 2346899999999999999999999999
Q ss_pred cCCCCCCCcchhhhccccc
Q 002615 326 LPMTSSGKVDYASLSASTS 344 (900)
Q Consensus 326 lP~t~~GKidr~~L~~~~~ 344 (900)
||+|++|||||++|++.+.
T Consensus 338 lP~t~~GKi~r~~L~~~~~ 356 (358)
T PRK07824 338 LPRRGIGKVDRRALVRRFA 356 (358)
T ss_pred CCCCCCccccHHHHHHHhh
Confidence 9999999999999987654
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-38 Score=359.26 Aligned_cols=302 Identities=18% Similarity=0.219 Sum_probs=249.6
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHH-HHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
+.|+++++|+++..+|++|..++.. ++.++..|+++++.+ ..++..+++.++++++|++.++|+.+..++.....
T Consensus 186 ~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~----~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~ 261 (529)
T PRK07867 186 QRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRR----KFSASGFLPDVRRYGATYANYVGKPLSYVLATPER 261 (529)
T ss_pred HhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEEecC----CCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCc
Confidence 4678899999999999999999865 677899999999985 56899999999999999999999999988765332
Q ss_pred ccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcE
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161 (900)
Q Consensus 82 ~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 161 (900)
.. ...+++| +++||+++++.+ ..+.+.+ ++++++.||+||++..++..+ .....++|.|+++
T Consensus 262 ~~--~~~~~lr-~~~gg~~~~~~~-~~~~~~~-g~~l~~~YG~TE~~~~~~~~~-----------~~~~~~~g~~~~~-- 323 (529)
T PRK07867 262 PD--DADNPLR-IVYGNEGAPGDI-ARFARRF-GCVVVDGFGSTEGGVAITRTP-----------DTPPGALGPLPPG-- 323 (529)
T ss_pred cc--ccccceE-EEecCCCChHHH-HHHHHHh-CCcEEEeecccccccccccCC-----------CCCCCCcCCCCCC--
Confidence 21 1235788 456899888765 6677777 789999999999986544211 1123468999998
Q ss_pred EEEecCC-C---CCCC------------ccEEEE-ccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCc
Q 002615 162 IVLVESD-T---VKPD------------EGEIYA-GGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGD 224 (900)
Q Consensus 162 ~~i~d~~-~---~~~~------------~GEl~v-~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGD 224 (900)
+++++++ + +.++ .|||++ +|+.++.||+++|+.+.+.| .++||+|||
T Consensus 324 ~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~----------------~~g~~~TGD 387 (529)
T PRK07867 324 VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERM----------------RGGVYWSGD 387 (529)
T ss_pred EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhh----------------cCCeEeecc
Confidence 5666532 2 2334 799999 99999999999999887766 257999999
Q ss_pred eEEEccCCcEEEEcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHH
Q 002615 225 FARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIK 304 (900)
Q Consensus 225 l~~~~~~G~l~~~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~ 304 (900)
+++++++|.++|+||+||+||++|+||+|.|||++|.+||.|.+++|++.+++..++.++++++..++... ..++++
T Consensus 388 ~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~~~---~~~~l~ 464 (529)
T PRK07867 388 LAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKF---DPDAFA 464 (529)
T ss_pred EEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCCCC---CHHHHH
Confidence 99999999999999999999999999999999999999999999999999988778888999988765332 235778
Q ss_pred HHHHhh--CCCCccCCEEEEcCCcCCCCCCCcchhhhcccccc
Q 002615 305 SWVSSK--LPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSF 345 (900)
Q Consensus 305 ~~l~~~--l~~~~~P~~~~~v~~lP~t~~GKidr~~L~~~~~~ 345 (900)
++++++ |+.+++|..|+++++||+|++|||+|++|+++...
T Consensus 465 ~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKv~r~~L~~~~~~ 507 (529)
T PRK07867 465 EFLAAQPDLGPKQWPSYVRVCAELPRTATFKVLKRQLSAEGVD 507 (529)
T ss_pred HHHHhhccCCcccCCeEEEEeeccCCCCCcceeHHHHHHhcCC
Confidence 888765 99999999999999999999999999999886643
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=362.20 Aligned_cols=300 Identities=20% Similarity=0.284 Sum_probs=252.6
Q ss_pred CcEEEEccCcchHhHHHH-HHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhccCCCCC
Q 002615 10 EELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVP 88 (900)
Q Consensus 10 ~d~~l~~~p~~~~~~~~~-~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~ 88 (900)
+++++..+|++|.+++.. ++..+..|++.++... ..++..+++.++++++|++.++|+++..++...... ..++
T Consensus 258 ~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~--~~~~ 332 (562)
T PRK12492 258 QEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITN---PRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFK--DLDF 332 (562)
T ss_pred CeEEEEecchHHHHHHHHHHHHHhhcCceEEEecC---CcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcc--cccc
Confidence 357788999999999754 6667788887776532 457889999999999999999999999988653222 2346
Q ss_pred CCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEEEEecCC
Q 002615 89 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD 168 (900)
Q Consensus 89 ~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 168 (900)
+++|.+++||+++++.+.+.|.+.+ ++++++.||+||++.+++...... .....++|+|++++.++|+|++
T Consensus 333 ~~lr~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~--------~~~~~~~G~p~~~~~v~ivd~~ 403 (562)
T PRK12492 333 SALKLTNSGGTALVKATAERWEQLT-GCTIVEGYGLTETSPVASTNPYGE--------LARLGTVGIPVPGTALKVIDDD 403 (562)
T ss_pred cceeEEEeccccCCHHHHHHHHHHh-CCceeeccCccccCceeeecCCcc--------cccCCccceecCCCEEEEECCC
Confidence 8999999999999999999998876 799999999999987655332111 1134578999999999999876
Q ss_pred CC---CCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcccCCcEE
Q 002615 169 TV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIK 245 (900)
Q Consensus 169 ~~---~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik 245 (900)
+. .++.|||+++|+.++.||+++|+.+.+.|. .++||+|||+|+++++|.++|+||+||+||
T Consensus 404 ~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~---------------~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~ 468 (562)
T PRK12492 404 GNELPLGERGELCIKGPQVMKGYWQQPEATAEALD---------------AEGWFKTGDIAVIDPDGFVRIVDRKKDLII 468 (562)
T ss_pred CCCCCCCCceEEEEeCCccccccccCchhhhhccc---------------CCCceecCcEEEECCCCeEEEecccCCeEE
Confidence 63 456799999999999999999998887763 257999999999999999999999999999
Q ss_pred ECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCEEEEcCC
Q 002615 246 INGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDS 325 (900)
Q Consensus 246 ~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~~~~v~~ 325 (900)
++|++|+|.+||+.|.+||.|.+++|++.++...++.+++++++..... ..++++++++++|+.|++|..++++++
T Consensus 469 ~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----~~~~i~~~~~~~l~~~~~P~~i~~~~~ 544 (562)
T PRK12492 469 VSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPGL----SVEELKAYCKENFTGYKVPKHIVLRDS 544 (562)
T ss_pred ECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCCC----CHHHHHHHHHHhcccccCCcEEEEecc
Confidence 9999999999999999999999999999887766777888887654322 236899999999999999999999999
Q ss_pred cCCCCCCCcchhhhccc
Q 002615 326 LPMTSSGKVDYASLSAS 342 (900)
Q Consensus 326 lP~t~~GKidr~~L~~~ 342 (900)
||+|++||++|++|+++
T Consensus 545 ~P~t~~GK~~r~~L~~~ 561 (562)
T PRK12492 545 LPMTPVGKILRRELRDI 561 (562)
T ss_pred CCCCCCCceeHHHHHhh
Confidence 99999999999999864
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=370.81 Aligned_cols=336 Identities=16% Similarity=0.139 Sum_probs=248.5
Q ss_pred cCC-CCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHH--HcCeeEEEecHHHHHHHHHHHh
Q 002615 4 LYP-LHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQ--AYSISRLTTVPSLMRVVLPALQ 80 (900)
Q Consensus 4 ~~~-~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~--~~~vt~~~~~Ps~l~~l~~~~~ 80 (900)
.++ +.++|++++++|++|+.++..++.+++.|+++++..+.....+|..+++.++ ++++|++..+|+++..++....
T Consensus 228 ~~~~~~~~~~~l~~~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~ 307 (612)
T PRK12476 228 SIDLLDRNTHGVSWLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRG 307 (612)
T ss_pred HhccCCCCceEEEeCCcccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhc
Confidence 355 7889999999999999999887777777777777654434458999999994 5899999999999888775321
Q ss_pred --hccCCCCCCCcCEEEEeccCCChhhHHHHHhhC-----CCceEEeecCccccccccceecccCCcc-------cc---
Q 002615 81 --SQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLF-----PNISILNLYGSTEVSGDCTYFDCKRLPS-------IL--- 143 (900)
Q Consensus 81 --~~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~-----~~~~l~~~YG~TE~~~~~~~~~~~~~~~-------~~--- 143 (900)
......++++|| +++||+++++++.+.+.+.| |..++++.||+||++..++.......+. ..
T Consensus 308 ~~~~~~~~~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (612)
T PRK12476 308 LPAEGDDIDLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAG 386 (612)
T ss_pred ChhhhcCcchhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCC
Confidence 111123468899 99999999999999998876 3356999999999876544322111000 00
Q ss_pred --------ccCCCCcceeeeccCCcEEEEecCC-C---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccC-
Q 002615 144 --------EMSTLKSVPIGLPISNCDIVLVESD-T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNC- 210 (900)
Q Consensus 144 --------~~~~~~~~~~G~p~~~~~~~i~d~~-~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~- 210 (900)
........++|+|+++++++|+|++ + +.++.|||+++|+.++.||+++|+.|++.|.........+.
T Consensus 387 ~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~ 466 (612)
T PRK12476 387 RAVRVAADAPNAVAHVSCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGS 466 (612)
T ss_pred CeeecCCCCCCcceeEeCCCcCCCCEEEEEeCCCCcCCCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhcccccccc
Confidence 0000123478999999999999876 4 34667999999999999999999999998853211000000
Q ss_pred --cCCCCCcceEecCceEEEccCCcEEEEcccCCcEEECceeeChHHHHHHHhC-CCCeeE--EEEEEeecCCceEEEEE
Q 002615 211 --SVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRG-HPDVVD--TAVVSHKHQGELVILVA 285 (900)
Q Consensus 211 --~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~rv~~~~iE~~l~~-~~~v~~--~~v~~~~~~~~~~~l~~ 285 (900)
......++||+|||+|++ +||+|+|+||+||+||++|+||+|.|||++|.+ ||.|.+ ++|++.++.. ++.+++
T Consensus 467 ~~~~~~~~~~w~~TGDlg~~-~dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~~~~~~ 544 (612)
T PRK12476 467 HADGAADDGTWLRTGDLGVY-LDGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAED-NERLVI 544 (612)
T ss_pred ccccccCCCCeeecccccee-ECCEEEEEeccCcEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCC-cceEEE
Confidence 001123579999999987 599999999999999999999999999999985 899999 6667776655 567888
Q ss_pred EEEecCCCCchHHHHHHHHHHHHhhCC-CCcc-CCEEEEcC--CcCCCCCCCcchhhhccccc
Q 002615 286 FIVLKEKKTSSEIFLSSIKSWVSSKLP-LAMI-PNRFVFMD--SLPMTSSGKVDYASLSASTS 344 (900)
Q Consensus 286 ~v~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~-P~~~~~v~--~lP~t~~GKidr~~L~~~~~ 344 (900)
++++++.... ...++|.+++++.++ .+++ |..+++++ +||+|++|||+|++|++.+.
T Consensus 545 ~v~~~~~~~~--~~~~~l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~L~~~~~ 605 (612)
T PRK12476 545 VAERAAGTSR--ADPAPAIDAIRAAVSRRHGLAVADVRLVPAGAIPRTTSGKLARRACRAQYL 605 (612)
T ss_pred EEEecCCccc--ccHHHHHHHHHHHHHHhhCCcceEEEEECCCCcCcCCchHHHHHHHHHHHH
Confidence 8887654321 112456666666665 3677 67788886 69999999999999987654
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-38 Score=363.14 Aligned_cols=315 Identities=19% Similarity=0.294 Sum_probs=248.3
Q ss_pred CCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhccC
Q 002615 5 YPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHN 84 (900)
Q Consensus 5 ~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~~ 84 (900)
+.+...++++..+|++|..++...+.++..|+++++.+ ..++..+++.|+++++|++.++|+++..|.+.....
T Consensus 222 ~~~~~~~~~l~~~pl~h~~g~~~~~~~~~~g~~~v~~~----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-- 295 (579)
T PLN03102 222 WEMGTCPVYLWTLPMFHCNGWTFTWGTAARGGTSVCMR----HVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLD-- 295 (579)
T ss_pred cCCCCCCeEEecCChhhhcchhHHHHHHHhcCcEEeec----cCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccc--
Confidence 34567789999999999999888888899999998885 457888999999999999999999999998753222
Q ss_pred CCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccC----Cccccc-cCCCCcceeeeccCC
Q 002615 85 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKR----LPSILE-MSTLKSVPIGLPISN 159 (900)
Q Consensus 85 ~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~----~~~~~~-~~~~~~~~~G~p~~~ 159 (900)
....++++.+++||+++++.+.+.+.+ + +.++++.||+||+++.++...... .+.... .........+.|+++
T Consensus 296 ~~~~~~~~~~~~gg~~~~~~~~~~~~~-~-g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 373 (579)
T PLN03102 296 LSPRSGPVHVLTGGSPPPAALVKKVQR-L-GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLAD 373 (579)
T ss_pred cCCcccceEEEECCCCCCHHHHHHHHH-c-CCeEEeecCccccCccccccccccccccCCcccccccccCCCcccccccc
Confidence 122457889999999999999998866 4 789999999999986544321110 000000 000011223344444
Q ss_pred cEEEEecCCC----CC--CCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCc
Q 002615 160 CDIVLVESDT----VK--PDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGD 233 (900)
Q Consensus 160 ~~~~i~d~~~----~~--~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~ 233 (900)
+. +.+.+. +. +..|||+++|+.+++||+++|+.+.+.| .++||+|||+|++++||+
T Consensus 374 v~--i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f----------------~~gw~~TGDlg~~d~dG~ 435 (579)
T PLN03102 374 VD--VKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAF----------------KHGWLNTGDVGVIHPDGH 435 (579)
T ss_pred eE--EeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhh----------------ccCceecCceEEEcCCCe
Confidence 44 444322 11 2469999999999999999999888877 257999999999999999
Q ss_pred EEEEcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchH-------HHHHHHHHH
Q 002615 234 LVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSE-------IFLSSIKSW 306 (900)
Q Consensus 234 l~~~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~-------~~~~~l~~~ 306 (900)
++|+||.||+||++|++|+|.|||.+|.+||.|.+++|++.+++..++.++++|++.++....+ ....+++++
T Consensus 436 l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~l~~~ 515 (579)
T PLN03102 436 VEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTKEDRVDKLVTRERDLIEY 515 (579)
T ss_pred EEEEeccCcEEEECCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCcccccccccccccccHHHHHHH
Confidence 9999999999999999999999999999999999999999988877778999998775432110 124679999
Q ss_pred HHhhCCCCccCCEEEEcCCcCCCCCCCcchhhhcccccc
Q 002615 307 VSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSF 345 (900)
Q Consensus 307 l~~~l~~~~~P~~~~~v~~lP~t~~GKidr~~L~~~~~~ 345 (900)
++++||.|++|..++++++||+|++|||+|++|++++..
T Consensus 516 ~~~~L~~~~~P~~i~~~~~~P~t~~gKi~r~~L~~~~~~ 554 (579)
T PLN03102 516 CRENLPHFMCPRKVVFLQELPKNGNGKILKPKLRDIAKG 554 (579)
T ss_pred HHhhcccccCCeEEEEcccCCCCCcccccHHHHHHHHHH
Confidence 999999999999999999999999999999999887554
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=358.11 Aligned_cols=309 Identities=22% Similarity=0.307 Sum_probs=261.7
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHH-HHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
..++++++|+++..+|++|+.++.. ++.++..|+++++.++ ..++..+++.|+++++|++.++|+++..++.....
T Consensus 196 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~ 272 (508)
T TIGR02262 196 NTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGE---RPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNL 272 (508)
T ss_pred HhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCC---CCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccc
Confidence 3568899999999999999999854 7888999999999853 35789999999999999999999998887654221
Q ss_pred ccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcE
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161 (900)
Q Consensus 82 ~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 161 (900)
......++|.+++||+++++++.+.|.+.+ ++++++.||+||++..++.... ......++|+|++++.
T Consensus 273 --~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~---------~~~~~~~~G~~~~g~~ 340 (508)
T TIGR02262 273 --PAEDQVRLRLCTSAGEALPAEVGQRWQARF-GVDIVDGIGSTEMLHIFLSNLP---------GDVRYGTSGKPVPGYR 340 (508)
T ss_pred --cccccccceeEEEcCCCCCHHHHHHHHHHh-CCchhhCccccccCceeecCCc---------cCCCCCCcCCCCCCcE
Confidence 112357899999999999999999999988 7899999999999865443211 1123457899999999
Q ss_pred EEEecCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEc
Q 002615 162 IVLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 238 (900)
Q Consensus 162 ~~i~d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 238 (900)
++++|+++ +++..|||+++|+.++.||+++++.+...| .++||+|||+++++++|.++++|
T Consensus 341 v~i~d~~~~~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~----------------~~~~~~TGD~~~~~~~g~~~~~g 404 (508)
T TIGR02262 341 LRLVGDGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTF----------------QGEWTRSGDKYVRNDDGSYTYAG 404 (508)
T ss_pred EEEECCCCCCCCCCCeeEEEEecCccccccCCCHHHhHhhh----------------hcCceeccceEEEcCCccEEEec
Confidence 99998655 345679999999999999999998887766 25799999999999999999999
Q ss_pred ccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCC
Q 002615 239 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 318 (900)
Q Consensus 239 R~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~ 318 (900)
|.||+||++|.+|+|.+||+.|.++++|.++++++..+......+++++++.......+...++|+++++++|+.+++|.
T Consensus 405 R~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~ 484 (508)
T TIGR02262 405 RTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTALETELKEHVKDRLAPYKYPR 484 (508)
T ss_pred cccceeeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCccccccHHHHHHHHHHhcccCCCCc
Confidence 99999999999999999999999999999999999877666667888888766543333456789999999999999999
Q ss_pred EEEEcCCcCCCCCCCcchhhhccc
Q 002615 319 RFVFMDSLPMTSSGKVDYASLSAS 342 (900)
Q Consensus 319 ~~~~v~~lP~t~~GKidr~~L~~~ 342 (900)
.++.++++|+|++||++|++|+++
T Consensus 485 ~i~~~~~iP~t~~gKi~r~~l~~~ 508 (508)
T TIGR02262 485 WIVFVDDLPKTATGKIQRFKLREG 508 (508)
T ss_pred eEEEecCCCCCCCCcEehhhccCC
Confidence 999999999999999999998764
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-38 Score=363.71 Aligned_cols=307 Identities=19% Similarity=0.245 Sum_probs=257.5
Q ss_pred CCCCC-CcEEEEccCcchHhHHHH-HHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 5 YPLHG-EELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 5 ~~~~~-~d~~l~~~p~~~~~~~~~-~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
+++.+ ++++++++|++|.+++.. ++.+++.|+++++.+ ..++..+++.|+++++|++.++|+++..++......
T Consensus 243 ~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 318 (563)
T PRK06710 243 YNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIP----KFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLK 318 (563)
T ss_pred cCCCCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcC----CCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccc
Confidence 34444 458899999999988755 667899999999986 468899999999999999999999999887643221
Q ss_pred cCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEE
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 162 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 162 (900)
...+++||.+++||+++++++.+.+.+.+ ++.+++.||+||++.++...... ......++|+|++++.+
T Consensus 319 --~~~~~~lr~v~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~--------~~~~~~~~G~~~~~~~~ 387 (563)
T PRK06710 319 --EYDISSIRACISGSAPLPVEVQEKFETVT-GGKLVEGYGLTESSPVTHSNFLW--------EKRVPGSIGVPWPDTEA 387 (563)
T ss_pred --cCChhhhhheeeCCCcCCHHHHHHHHHhh-CCCEecccccccCccccccCccc--------ccccCCccCCCCCCCeE
Confidence 12357999999999999999999998877 78899999999998754422110 11134578999999999
Q ss_pred EEecCCC----CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEc
Q 002615 163 VLVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 238 (900)
Q Consensus 163 ~i~d~~~----~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 238 (900)
++++++. +.+..|||+++|+.++.||+++++.+...| .++||+|||+++++++|.++++|
T Consensus 388 ~i~~~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~----------------~~g~~~TGD~~~~~~~g~~~~~G 451 (563)
T PRK06710 388 MIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVL----------------QDGWLHTGDVGYMDEDGFFYVKD 451 (563)
T ss_pred EEEECCCCccCCCCCceEEEEecCccchhhhCChHHHhhhc----------------ccCcccccceEEEcCCCcEEEee
Confidence 9997433 345679999999999999999998887665 25799999999999999999999
Q ss_pred ccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCC
Q 002615 239 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 318 (900)
Q Consensus 239 R~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~ 318 (900)
|.||+||++|++|+|.+||++|.++|.|.+++|++.++...++.++++++..+..... .++++++++++||.+++|.
T Consensus 452 R~dd~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~P~ 528 (563)
T PRK06710 452 RKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECS---EEELNQFARKYLAAYKVPK 528 (563)
T ss_pred ccccEEEECCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCCCCC---HHHHHHHHHHhcccccCCc
Confidence 9999999999999999999999999999999999988877677888888877654322 3689999999999999999
Q ss_pred EEEEcCCcCCCCCCCcchhhhcccccc
Q 002615 319 RFVFMDSLPMTSSGKVDYASLSASTSF 345 (900)
Q Consensus 319 ~~~~v~~lP~t~~GKidr~~L~~~~~~ 345 (900)
.++++++||+|++||++|++|+++...
T Consensus 529 ~~~~v~~iP~t~~GKi~r~~L~~~~~~ 555 (563)
T PRK06710 529 VYEFRDELPKTTVGKILRRVLIEEEKR 555 (563)
T ss_pred EEEEcccCCCCccchhhHHHHHHHHhh
Confidence 999999999999999999999876543
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=358.06 Aligned_cols=305 Identities=17% Similarity=0.248 Sum_probs=246.7
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHH-HHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
+.++++++|+++..+|++|..++.. ++.+|..|+++++.+ ..++..+++.++++++|++..+|+.+..++.....
T Consensus 184 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~----~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~ 259 (540)
T PRK13388 184 ERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPA----KFSASGFLDDVRRYGATYFNYVGKPLAYILATPER 259 (540)
T ss_pred HHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECC----CCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCC
Confidence 4578999999999999999999876 456899999999885 46789999999999999999999999888754322
Q ss_pred ccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcE
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161 (900)
Q Consensus 82 ~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 161 (900)
.. ...+++|. ++ |+++++.....+.+.+ +.+++|.||+||++..++... .....++|+|+++++
T Consensus 260 ~~--~~~~~l~~-~~-G~~~~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~-----------~~~~~~vG~p~~g~~ 323 (540)
T PRK13388 260 PD--DADNPLRV-AF-GNEASPRDIAEFSRRF-GCQVEDGYGSSEGAVIVVREP-----------GTPPGSIGRGAPGVA 323 (540)
T ss_pred cc--ccccceEE-EE-CCCCCHHHHHHHHHHh-CCceecccccccccceeecCC-----------CCCCCCCCCCCCCcE
Confidence 11 11345664 33 6667888888888887 789999999999986554211 113457899999976
Q ss_pred EE-----------EecCCCC----CCCccEEEEc-cccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCce
Q 002615 162 IV-----------LVESDTV----KPDEGEIYAG-GLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDF 225 (900)
Q Consensus 162 ~~-----------i~d~~~~----~~~~GEl~v~-g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl 225 (900)
+. ++|+++. .+..|||+++ |++++.||+++|+.+.+.| .++||+|||+
T Consensus 324 i~~~~~~~~~~~~~~d~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~----------------~~g~~~TGD~ 387 (540)
T PRK13388 324 IYNPETLTECAVARFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERM----------------RHGMYWSGDL 387 (540)
T ss_pred EEcCCCCccccceeccCccccccCCCcceEEEEecCCcccccccCChHHHHHHh----------------hcCceeccce
Confidence 53 2232221 2347999998 9999999999999888776 2479999999
Q ss_pred EEEccCCcEEEEcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHH
Q 002615 226 ARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKS 305 (900)
Q Consensus 226 ~~~~~~G~l~~~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~ 305 (900)
|++++||.++++||+||+||++|++|+|.|||++|.+||.|.+|+|++.++...++.+++++++.+..... .+++++
T Consensus 388 ~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~---~~~l~~ 464 (540)
T PRK13388 388 AYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGATFD---PDAFAA 464 (540)
T ss_pred EEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCCcCC---HHHHHH
Confidence 99999999999999999999999999999999999999999999999988776666777888776543222 356778
Q ss_pred HHHh--hCCCCccCCEEEEcCCcCCCCCCCcchhhhccccccc
Q 002615 306 WVSS--KLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFT 346 (900)
Q Consensus 306 ~l~~--~l~~~~~P~~~~~v~~lP~t~~GKidr~~L~~~~~~~ 346 (900)
+++. .||.+++|..++++++||+|++|||+|++|++.....
T Consensus 465 ~l~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~R~~L~~~~~~~ 507 (540)
T PRK13388 465 FLAAQPDLGTKAWPRYVRIAADLPSTATNKVLKRELIAQGWAT 507 (540)
T ss_pred HHHhhccCCcccCCcEEEEeccCCCCCcceeeHHhHHHhccCC
Confidence 8875 4999999999999999999999999999998865443
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=350.40 Aligned_cols=292 Identities=23% Similarity=0.354 Sum_probs=246.8
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
+.++++++|+++..+|++|..++..++.++..|+++++.++ . ..+++.|+++++|++.++|++++.++.....
T Consensus 145 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~----~--~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~- 217 (436)
T TIGR01923 145 ENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDK----F--NQLLEMIANERVTHISLVPTQLNRLLDEGGH- 217 (436)
T ss_pred hhcCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecch----H--HHHHHHHHHhCCeEEEeHHHHHHHHHhCcCC-
Confidence 46789999999999999999999889999999999999863 2 3889999999999999999999998765321
Q ss_pred cCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEE
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 162 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 162 (900)
.+++|.+++|||++++++.+.+.+. ++.+++.||+||++..++....... ....++|+|++++++
T Consensus 218 -----~~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~--------~~~~~~G~~~~~~~~ 282 (436)
T TIGR01923 218 -----NENLRKILLGGSAIPAPLIEEAQQY--GLPIYLSYGMTETCSQVTTATPEML--------HARPDVGRPLAGREI 282 (436)
T ss_pred -----CCceEEEEECCCCCCHHHHHHHHHh--CCceeeEecCCccchhccCcCcccc--------ccccCCCccCCCcEE
Confidence 2689999999999999999988764 8899999999999876553322110 112248999999999
Q ss_pred EEecCCCCCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcccCC
Q 002615 163 VLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 242 (900)
Q Consensus 163 ~i~d~~~~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 242 (900)
++..++. .+.|||+++|+.++.||+++++.+...+ .++||+|||++++++||.+++.||.||
T Consensus 283 ~i~~~~~--~~~Gel~v~~~~~~~gy~~~~~~~~~~~----------------~~~~~~TGD~~~~~~dg~~~~~GR~~d 344 (436)
T TIGR01923 283 KIKVDNK--EGHGEIMVKGANLMKGYLYQGELTPAFE----------------QQGWFNTGDIGELDGEGFLYVLGRRDD 344 (436)
T ss_pred EEEeCCC--CCceEEEEECCccchhhCCChhhhhhhh----------------cCCCeeccceEEEcCCCCEEEeccccC
Confidence 9843222 3779999999999999999877765433 357999999999999999999999999
Q ss_pred cEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCEEEE
Q 002615 243 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 322 (900)
Q Consensus 243 ~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~~~~ 322 (900)
+||++|++|+|.+||++|.++|.|.+++|++.++...+..+++++++.... ..+++.+++++.|+.+++|..+++
T Consensus 345 ~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-----~~~~l~~~l~~~l~~~~~p~~i~~ 419 (436)
T TIGR01923 345 LIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESDI-----SQAKLIAYLTEKLAKYKVPIAFEK 419 (436)
T ss_pred eEEeCCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECCCC-----CHHHHHHHHHHhhhCCCCCeEEEE
Confidence 999999999999999999999999999999887766566778888876531 235788899999999999999999
Q ss_pred cCCcCCCCCCCcchhhh
Q 002615 323 MDSLPMTSSGKVDYASL 339 (900)
Q Consensus 323 v~~lP~t~~GKidr~~L 339 (900)
+++||+|++||++|++|
T Consensus 420 ~~~iP~t~~GK~~r~~L 436 (436)
T TIGR01923 420 LDELPYNASGKILRNQL 436 (436)
T ss_pred ecCCCCCCCCceecccC
Confidence 99999999999999876
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=368.96 Aligned_cols=313 Identities=17% Similarity=0.184 Sum_probs=244.8
Q ss_pred CCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc----
Q 002615 7 LHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ---- 82 (900)
Q Consensus 7 ~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~---- 82 (900)
+.++|++++.+|++|.++....+.+++.|+++++.+ .++..+++.|+++++|+++++|++++.+.......
T Consensus 263 ~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~-----~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~ 337 (660)
T PLN02861 263 ATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQ-----GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSG 337 (660)
T ss_pred CCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeC-----CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhcc
Confidence 578999999999999999876666899999998873 47889999999999999999999999886421100
Q ss_pred -----------------------------cCC---------CCC-CCcCEEEEeccCCChhhHHHHHhhCCCceEEeecC
Q 002615 83 -----------------------------HNM---------HVP-SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYG 123 (900)
Q Consensus 83 -----------------------------~~~---------~~~-~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG 123 (900)
... ..+ .+||.+++||+++++++. .|.+.++...+++.||
T Consensus 338 ~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~-~~~~~~~~~~l~~~YG 416 (660)
T PLN02861 338 GMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVE-EFLRVTSCSVLSQGYG 416 (660)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHH-HHHHHHcCCCeeEecc
Confidence 000 001 589999999999999975 4666664557999999
Q ss_pred ccccccccceecccCCccccccCCCCcceeeeccCCcEEEEecC--CC----CCCCccEEEEccccccccccCCCCCCcc
Q 002615 124 STEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVES--DT----VKPDEGEIYAGGLCLSNGYFSESTFMPS 197 (900)
Q Consensus 124 ~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~--~~----~~~~~GEl~v~g~~~~~gY~~~~~~~~~ 197 (900)
+||+++.++..... ......++|+|+++++++++|. ++ .+++.|||+|+|++++.||+++|+.|++
T Consensus 417 ~TE~~~~~~~~~~~--------~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~ 488 (660)
T PLN02861 417 LTESCGGCFTSIAN--------VFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEE 488 (660)
T ss_pred hhhhhhceeecccc--------cCCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHHHHHh
Confidence 99998655432111 0113467999999999999872 12 2345799999999999999999999998
Q ss_pred chhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcccCCcEEE-CceeeChHHHHHHHhCCCCeeEEEEEEeec
Q 002615 198 EYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKI-NGQRMALEEIEHTLRGHPDVVDTAVVSHKH 276 (900)
Q Consensus 198 ~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~ 276 (900)
.|. ++||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+.
T Consensus 489 ~f~----------------dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~ 552 (660)
T PLN02861 489 VLI----------------DGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSF 552 (660)
T ss_pred hhh----------------ccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCC
Confidence 882 579999999999999999999999999998 799999999999999999999999998763
Q ss_pred CCceEEEEEEEEecCCC-----------CchH------HHHHHHHHHHHh-----hCCCCccCCEEEEcC-Cc-----CC
Q 002615 277 QGELVILVAFIVLKEKK-----------TSSE------IFLSSIKSWVSS-----KLPLAMIPNRFVFMD-SL-----PM 328 (900)
Q Consensus 277 ~~~~~~l~~~v~~~~~~-----------~~~~------~~~~~l~~~l~~-----~l~~~~~P~~~~~v~-~l-----P~ 328 (900)
. ..++|+|++.... .... .....+.+.+++ .|+.+..+..+.+++ .| ++
T Consensus 553 ~---~~~~A~vv~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~l 629 (660)
T PLN02861 553 E---SFLVAVVVPDRQALEDWAANNNKTGDFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLI 629 (660)
T ss_pred c---ceeEEEEEcCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcC
Confidence 2 3688898875321 0001 111223333332 489999999998865 46 89
Q ss_pred CCCCCcchhhhccccccccccccC
Q 002615 329 TSSGKVDYASLSASTSFTISAQHD 352 (900)
Q Consensus 329 t~~GKidr~~L~~~~~~~~~~~~~ 352 (900)
|+++|+.|+.+.+.|+..++..|.
T Consensus 630 T~t~K~~R~~i~~~y~~~I~~lY~ 653 (660)
T PLN02861 630 TPTFKLKRPQLLKYYKDCIDQLYS 653 (660)
T ss_pred CHHHhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999988877665553
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=361.26 Aligned_cols=312 Identities=20% Similarity=0.265 Sum_probs=258.4
Q ss_pred ccCCCCCCcEEEEccCcchHhHHH-HHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQ-EFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
..++++++|+++..+|++|..++. .++.+++.|+++++.+ ..++..+++.++++++|++..+|+++..++.....
T Consensus 221 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~ 296 (547)
T PRK06087 221 ARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLD----IFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEK 296 (547)
T ss_pred HhcCCCCCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecC----CCCHHHHHHHHHHcCCCEEeccHHHHHHHHhcccc
Confidence 346788999999999999999875 4888999999999986 56899999999999999999888777766654432
Q ss_pred ccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcE
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161 (900)
Q Consensus 82 ~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 161 (900)
. ...+++||.+++|||++++++.+.+.+. ++++++.||+||++..+...... .......++|+|++++.
T Consensus 297 ~--~~~~~~lr~i~~gG~~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~-------~~~~~~~~~G~~~~~~~ 365 (547)
T PRK06087 297 Q--PADLSALRFFLCGGTTIPKKVARECQQR--GIKLLSVYGSTESSPHAVVNLDD-------PLSRFMHTDGYAAAGVE 365 (547)
T ss_pred C--CCCCCCeEEEEEcCCCCCHHHHHHHHHc--CCcEEEEecccccCCccccCCCc-------chhhcCCcCCccCCCce
Confidence 2 2346899999999999999999888764 78999999999998665432110 00112346899999999
Q ss_pred EEEecCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEc
Q 002615 162 IVLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 238 (900)
Q Consensus 162 ~~i~d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 238 (900)
++++|+++ +.+..|||+++|+.++.||+++++.+...|. .++||+|||+++++++|+++++|
T Consensus 366 ~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~---------------~~g~~~TGDl~~~~~~g~l~i~G 430 (547)
T PRK06087 366 IKVVDEARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALD---------------EEGWYYSGDLCRMDEAGYIKITG 430 (547)
T ss_pred EEEEcCCCCCCcCCCcceEEEecccccccccCCHHHHHHHhC---------------CCCCcCcCceEEECCCCCEEEEe
Confidence 99998765 3456799999999999999999988877662 25799999999999999999999
Q ss_pred ccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHH-hhCCCCccC
Q 002615 239 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVS-SKLPLAMIP 317 (900)
Q Consensus 239 R~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~-~~l~~~~~P 317 (900)
|.||+||++|++|+|.+||++|.++|.|.+++|++.++...++.+++++++...... ...+++.+++. +.++.+++|
T Consensus 431 R~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~l~~~~~P 508 (547)
T PRK06087 431 RKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHS--LTLEEVVAFFSRKRVAKYKYP 508 (547)
T ss_pred cchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCCC--CCHHHHHHHHHhccccccCCC
Confidence 999999999999999999999999999999999998877777788899987653211 12356777764 689999999
Q ss_pred CEEEEcCCcCCCCCCCcchhhhccccccc
Q 002615 318 NRFVFMDSLPMTSSGKVDYASLSASTSFT 346 (900)
Q Consensus 318 ~~~~~v~~lP~t~~GKidr~~L~~~~~~~ 346 (900)
..|.++++||+|++||++|++|++.....
T Consensus 509 ~~i~~v~~iP~t~sGK~~r~~l~~~~~~~ 537 (547)
T PRK06087 509 EHIVVIDKLPRTASGKIQKFLLRKDIMRR 537 (547)
T ss_pred eEEEEeccCCCCCCCcCcHHHHHHHHHHH
Confidence 99999999999999999999998765443
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=355.52 Aligned_cols=315 Identities=20% Similarity=0.258 Sum_probs=258.2
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
..++++++|+++..+|++|..++...+.++..|++++++.. ..++..+++.++++++|++.++|++++.+.......
T Consensus 213 ~~~~~~~~d~~~~~~p~~h~~~~~~~~~~~~~g~~~v~~~~---~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~ 289 (542)
T PRK06018 213 DALGTSAADTMLPVVPLFHANSWGIAFSAPSMGTKLVMPGA---KLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKE 289 (542)
T ss_pred hhcCCCCCCEEEEecCHHHHhhhHHHHhhhhcCceEEccCc---CCCHHHHHHHHHhcCCceeecCcHHHHHHHhccccc
Confidence 45778999999999999999998877889999999998642 467889999999999999999999999988755432
Q ss_pred cCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccC--CCCcceeeeccCCc
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMS--TLKSVPIGLPISNC 160 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~--~~~~~~~G~p~~~~ 160 (900)
. ..+++||.+++|||++++.+++.|++ + ++.+++.||+||++.+++.............. .....++|+|.+++
T Consensus 290 ~--~~~~~lr~~~~~G~~l~~~~~~~~~~-~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~ 365 (542)
T PRK06018 290 G--LKLPHLKMVVCGGSAMPRSMIKAFED-M-GVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGV 365 (542)
T ss_pred C--CCcccceEEEEcCCCCCHHHHHHHHH-h-CCCeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCc
Confidence 2 23679999999999999999999998 5 88999999999998766543211100000000 01235789999999
Q ss_pred EEEEecCCCCCC-----CccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEE
Q 002615 161 DIVLVESDTVKP-----DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLV 235 (900)
Q Consensus 161 ~~~i~d~~~~~~-----~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~ 235 (900)
+++++|+++.+. ..|||+++|+.++.||++.. ...+ ..++||+|||+++++++|+++
T Consensus 366 ~i~v~d~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~~---~~~~---------------~~~~~~~TGDl~~~~~~g~~~ 427 (542)
T PRK06018 366 EMKITDDAGKELPWDGKTFGRLKVRGPAVAAAYYRVD---GEIL---------------DDDGFFDTGDVATIDAYGYMR 427 (542)
T ss_pred EEEEECCCCCCCCCCCCceeEEEEecCCcchhhhcCc---ccEe---------------cCCcEEEcCCEEEEcCCccEE
Confidence 999998766321 35999999999999999832 1111 136899999999999999999
Q ss_pred EEcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCc
Q 002615 236 FLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAM 315 (900)
Q Consensus 236 ~~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 315 (900)
++||.||+||++|++|+|.|||..+.+||.|.+|+|++.++...++.+.+++++.++.... .++++++++++++.++
T Consensus 428 ~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~ 504 (542)
T PRK06018 428 ITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGETAT---REEILKYMDGKIAKWW 504 (542)
T ss_pred EEecCCCeEEECCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCCCCCC---HHHHHHHHHhhCcccc
Confidence 9999999999999999999999999999999999999988876666788888876654322 3579999999999999
Q ss_pred cCCEEEEcCCcCCCCCCCcchhhhcccccc
Q 002615 316 IPNRFVFMDSLPMTSSGKVDYASLSASTSF 345 (900)
Q Consensus 316 ~P~~~~~v~~lP~t~~GKidr~~L~~~~~~ 345 (900)
+|..++++++||+|++||++|++|++.+..
T Consensus 505 ~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~ 534 (542)
T PRK06018 505 MPDDVAFVDAIPHTATGKILKTALREQFKD 534 (542)
T ss_pred CCcEEEEeccCCCCCcchhhHHHHHHHHhc
Confidence 999999999999999999999999876543
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=354.10 Aligned_cols=302 Identities=20% Similarity=0.244 Sum_probs=254.2
Q ss_pred CCCCCCcEEEEccCcchHhHH-HHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhcc
Q 002615 5 YPLHGEELLLFKTSISFIDHL-QEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQH 83 (900)
Q Consensus 5 ~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~ 83 (900)
..+.++|+++..+|++|..+. ..++.++..|+++++.+ ..++..+++.++++++|++.++|++++.++.......
T Consensus 209 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 284 (517)
T PRK08008 209 CALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLLE----KYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSAN 284 (517)
T ss_pred cCCCCCCeEEEecCcHHHHHHHHHHHHHHhcCcEEEEcc----ccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccc
Confidence 356889999999999987655 55888999999999986 5688999999999999999999999998875432221
Q ss_pred CCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEEE
Q 002615 84 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 163 (900)
Q Consensus 84 ~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 163 (900)
....+||.+.++ +++++.+.+.+.+.+ ++++++.||+||++..++..... ......++|.|+++++++
T Consensus 285 --~~~~~l~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~--------~~~~~~~~G~~~~g~~~~ 352 (517)
T PRK08008 285 --DRQHCLREVMFY-LNLSDQEKDAFEERF-GVRLLTSYGMTETIVGIIGDRPG--------DKRRWPSIGRPGFCYEAE 352 (517)
T ss_pred --cccccceeeEEe-cCCCHHHHHHHHHHh-CCeEEeeccccccccccccCCcc--------ccccCCccccCCCCcEEE
Confidence 123578888775 478999999988887 78999999999998655432211 112345799999999999
Q ss_pred EecCCC---CCCCccEEEEcc---ccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEE
Q 002615 164 LVESDT---VKPDEGEIYAGG---LCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFL 237 (900)
Q Consensus 164 i~d~~~---~~~~~GEl~v~g---~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~ 237 (900)
++|+++ +.+..|||+++| +++++||+++++.+.+.|.. ++||+|||+++++++|.++|+
T Consensus 353 i~d~~~~~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~---------------~g~~~TGDl~~~~~~g~~~~~ 417 (517)
T PRK08008 353 IRDDHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEA---------------DGWLHTGDTGYVDEEGFFYFV 417 (517)
T ss_pred EECCCCCCCCCCCcceEEEeCCCCcchhhhHhCChHHHhhcccC---------------CCCeeccceEEECCCCcEEEe
Confidence 998766 345679999997 58999999999998887742 579999999999999999999
Q ss_pred cccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccC
Q 002615 238 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP 317 (900)
Q Consensus 238 GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P 317 (900)
||.||+||++|++|+|.+||+++.+|+.|.+++|++.++...+..+.++++++...... .++|+++++++++.|++|
T Consensus 418 GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~P 494 (517)
T PRK08008 418 DRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLS---EEEFFAFCEQNMAKFKVP 494 (517)
T ss_pred ecccceEEeCCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCCCCC---HHHHHHHHHhhcccccCC
Confidence 99999999999999999999999999999999999998877777889999987654322 368999999999999999
Q ss_pred CEEEEcCCcCCCCCCCcchhhhc
Q 002615 318 NRFVFMDSLPMTSSGKVDYASLS 340 (900)
Q Consensus 318 ~~~~~v~~lP~t~~GKidr~~L~ 340 (900)
..+++++++|+|++||++|+.|+
T Consensus 495 ~~~~~v~~iP~t~~gK~~r~~l~ 517 (517)
T PRK08008 495 SYLEIRKDLPRNCSGKIIKKNLK 517 (517)
T ss_pred cEEEEeccCCCCCccceehhhcC
Confidence 99999999999999999999874
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=358.73 Aligned_cols=311 Identities=19% Similarity=0.223 Sum_probs=241.9
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHH-HHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
+.++++++|+++..+|++|.+++.. ++.++..|+++++.+ .+++..+++.++++++|++.++|++++.++.....
T Consensus 233 ~~~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~----~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~ 308 (600)
T PRK08279 233 GLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRR----KFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPK 308 (600)
T ss_pred HhcCCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcC----CCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCC
Confidence 4578999999999999999999876 556778888888875 57889999999999999999999999988765332
Q ss_pred ccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccC---
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPIS--- 158 (900)
Q Consensus 82 ~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~--- 158 (900)
.. ....++|. ++|+++++++++.|.+.++...++|.||+||++..++.. .. ...++|++.+
T Consensus 309 ~~--~~~~~l~~--~~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~--~~----------~~~~~g~~~~~~~ 372 (600)
T PRK08279 309 PT--DRDHRLRL--MIGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINV--FN----------FDGTVGRVPLWLA 372 (600)
T ss_pred cc--ccCcceeE--EecCCCCHHHHHHHHHHhCcceeeeeecccccceeeccc--CC----------CCccccccccccc
Confidence 21 12356665 458889999999999999767899999999987533211 10 1223454443
Q ss_pred -CcEE---------EEecCCC-----CCCCccEEE--EccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEe
Q 002615 159 -NCDI---------VLVESDT-----VKPDEGEIY--AGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFR 221 (900)
Q Consensus 159 -~~~~---------~i~d~~~-----~~~~~GEl~--v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 221 (900)
+..+ .+.+.++ ++++.|||+ +.|++++.|| ++++.+.+.|...... .+++||+
T Consensus 373 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~---------~~~~~~~ 442 (600)
T PRK08279 373 HPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFK---------KGDAWFN 442 (600)
T ss_pred ccceeeeeccCcCceeeCCCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcccC---------CCCceEe
Confidence 2222 2222221 345679998 7899999999 8888888877653221 2468999
Q ss_pred cCceEEEccCCcEEEEcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCC-ceEEEEEEEEecCCCCchHHHH
Q 002615 222 TGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQG-ELVILVAFIVLKEKKTSSEIFL 300 (900)
Q Consensus 222 TGDl~~~~~~G~l~~~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~-~~~~l~~~v~~~~~~~~~~~~~ 300 (900)
|||+|++++||.++|+||.||+||++|+||+|.|||++|.+||+|.+|+|++.+... .+...+++++..++.. ...
T Consensus 443 TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~~---~~~ 519 (600)
T PRK08279 443 TGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGAE---FDL 519 (600)
T ss_pred ecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCCcc---CCH
Confidence 999999999999999999999999999999999999999999999999999876543 2233455555543222 224
Q ss_pred HHHHHHHHhhCCCCccCCEEEEcCCcCCCCCCCcchhhhccccccc
Q 002615 301 SSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFT 346 (900)
Q Consensus 301 ~~l~~~l~~~l~~~~~P~~~~~v~~lP~t~~GKidr~~L~~~~~~~ 346 (900)
++++++++++||.|++|..++++++||+|++||++|++|+++....
T Consensus 520 ~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 565 (600)
T PRK08279 520 AALAAHLYERLPAYAVPLFVRLVPELETTGTFKYRKVDLRKEGFDP 565 (600)
T ss_pred HHHHHHHHhhCccccCCeEEEeecCCCCCcchhhhHHHHhhcCCCc
Confidence 6899999999999999999999999999999999999998766544
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=347.36 Aligned_cols=284 Identities=22% Similarity=0.313 Sum_probs=242.0
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
+.+++.++|+++..+|++|..++..++.+|..|+++++.+. ..+++.+ .++|.+.++|+++..++.....
T Consensus 169 ~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~G~~v~~~~~-------~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~- 238 (458)
T PRK09029 169 SLMPFTAQDSWLLSLPLFHVSGQGIVWRWLYAGATLVVRDK-------QPLEQAL--AGCTHASLVPTQLWRLLDNRSE- 238 (458)
T ss_pred hcCCCCccceEEEecCcHhhhhhHHHHHHHhCCceEEeCCh-------HHHHHHH--hhceeeecChHHHHHHHhcccc-
Confidence 45788999999999999999998878889999999999852 3355666 3799999999999988765332
Q ss_pred cCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEE
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 162 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 162 (900)
..+||.+++||+++++.+.+.+.+. +.++++.||+||++...+.... ....++|+|++++.+
T Consensus 239 -----~~~l~~i~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE~~~~~~~~~~-----------~~~~~~G~~~~~~~~ 300 (458)
T PRK09029 239 -----PLSLKAVLLGGAAIPVELTEQAEQQ--GIRCWCGYGLTEMASTVCAKRA-----------DGLAGVGSPLPGREV 300 (458)
T ss_pred -----CCcceEEEECCCCCCHHHHHHHHHc--CCcEeccccccccCcceeccCC-----------CCCCCCCCCCCCCEE
Confidence 3479999999999999999988764 7899999999999864432211 023458999999999
Q ss_pred EEecCCCCCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcccCC
Q 002615 163 VLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 242 (900)
Q Consensus 163 ~i~d~~~~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 242 (900)
++.+ |||+|+|+.++.||+++++.+.... .++||+|||+|+++ ||.++|+||+||
T Consensus 301 ~i~~--------gel~v~g~~~~~gY~~~~~~~~~~~----------------~~~~~~TGD~~~~~-~g~l~~~gR~~d 355 (458)
T PRK09029 301 KLVD--------GEIWLRGASLALGYWRQGQLVPLVN----------------DEGWFATRDRGEWQ-NGELTILGRLDN 355 (458)
T ss_pred EEeC--------CEEEEecCceeeeeecCcccccccc----------------CCCccCCCCcEEEe-CCEEEEeccccc
Confidence 9986 9999999999999999887764321 36899999999999 999999999999
Q ss_pred cEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCEEEE
Q 002615 243 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 322 (900)
Q Consensus 243 ~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~~~~ 322 (900)
+||++|++|+|.|||++|.+||.|.+++|++.++...++.++++++.... ...++|+++++++||.|++|..+++
T Consensus 356 ~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~-----~~~~~l~~~~~~~l~~~~~P~~~~~ 430 (458)
T PRK09029 356 LFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSE-----AAVVNLAEWLQDKLARFQQPVAYYL 430 (458)
T ss_pred ceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCcc-----cCHHHHHHHHHhhchhccCCeEEEE
Confidence 99999999999999999999999999999999888777788888886632 2346899999999999999999999
Q ss_pred cCCcCCCCCCCcchhhhccccc
Q 002615 323 MDSLPMTSSGKVDYASLSASTS 344 (900)
Q Consensus 323 v~~lP~t~~GKidr~~L~~~~~ 344 (900)
++++|+|++||++|+.|+++..
T Consensus 431 ~~~~p~t~~gKi~r~~L~~~~~ 452 (458)
T PRK09029 431 LPPELKNGGIKISRQALKEWVA 452 (458)
T ss_pred ecccccCcCCCcCHHHHHHHHH
Confidence 9999999999999999987655
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=384.58 Aligned_cols=305 Identities=15% Similarity=0.162 Sum_probs=252.6
Q ss_pred ccCCCCCCcEEEEccCcchHhHH-HHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHL-QEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
+.++++++|++++.+|++|..++ ..++.++..|+++++.+. ..++..+.+.++++++|++.++|++++.+.+...
T Consensus 827 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~- 902 (1140)
T PRK06814 827 ARIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYPS---PLHYRIIPELIYDTNATILFGTDTFLNGYARYAH- 902 (1140)
T ss_pred HhhCCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEecC---cccHHHHHHHHHhcCCEEEEecHHHHHHHHhhcc-
Confidence 45788999999999999999998 668999999999998752 3456778899999999999999999998876422
Q ss_pred ccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcE
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161 (900)
Q Consensus 82 ~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 161 (900)
..+++++|.+++|||++++++.+.+.+.+ +++++|.||+||++..++.... ......++|+|+++++
T Consensus 903 ---~~~~~~lr~v~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~---------~~~~~~~vG~p~~g~~ 969 (1140)
T PRK06814 903 ---PYDFRSLRYVFAGAEKVKEETRQTWMEKF-GIRILEGYGVTETAPVIALNTP---------MHNKAGTVGRLLPGIE 969 (1140)
T ss_pred ---cccccceeEEEEcCCcCCHHHHHHHHHHh-CCcEEeccccccccceEEecCC---------CCCCCCcCCccCCCCe
Confidence 23468999999999999999999999887 7899999999999876553211 1124567999999999
Q ss_pred EEEecCCCCCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcccC
Q 002615 162 IVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 241 (900)
Q Consensus 162 ~~i~d~~~~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 241 (900)
+++.+.++ .++.|||+++|+.++.||+++++... +. ...++||+|||++++|+||+++++||.|
T Consensus 970 ~~~~~~~~-~~~~Gel~v~g~~~~~gY~~~~~~~~--~~-------------~~~~g~~~TGDl~~~d~dG~l~~~GR~~ 1033 (1140)
T PRK06814 970 YRLEPVPG-IDEGGRLFVRGPNVMLGYLRAENPGV--LE-------------PPADGWYDTGDIVTIDEEGFITIKGRAK 1033 (1140)
T ss_pred EEEeecCC-CCCceEEEEeCCCcchhhcCCCCCCc--cc-------------cCCCCeEecCCEEEECCCCeEEEEeccc
Confidence 99986432 45679999999999999998764221 10 0136899999999999999999999999
Q ss_pred CcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhh-CCCCccCCEE
Q 002615 242 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK-LPLAMIPNRF 320 (900)
Q Consensus 242 d~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~P~~~ 320 (900)
|+||++|+||+|.|||+++.+|+.+.+++|++.+++..++.+++++... . ...+++++++++. +|.|++|..+
T Consensus 1034 d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~~~-~-----~~~~~l~~~~~~~~l~~~~~P~~i 1107 (1140)
T PRK06814 1034 RFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTTAS-D-----ATRAAFLAHAKAAGASELMVPAEI 1107 (1140)
T ss_pred CeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEcCC-C-----cCHHHHHHHHHHcCCCcccCCcEE
Confidence 9999999999999999999999999999999988877667777665421 1 1235788888864 9999999999
Q ss_pred EEcCCcCCCCCCCcchhhhccccccc
Q 002615 321 VFMDSLPMTSSGKVDYASLSASTSFT 346 (900)
Q Consensus 321 ~~v~~lP~t~~GKidr~~L~~~~~~~ 346 (900)
+.++++|+|++||+||++|++++...
T Consensus 1108 ~~v~~lP~t~~GKi~r~~L~~~~~~~ 1133 (1140)
T PRK06814 1108 ITIDEIPLLGTGKIDYVAVTKLAEEA 1133 (1140)
T ss_pred EEecCcCCCCCCCCcHHHHHHHHHHh
Confidence 99999999999999999998865543
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=351.63 Aligned_cols=300 Identities=20% Similarity=0.260 Sum_probs=251.6
Q ss_pred CCCcEEEEccCcchHhHHHH-HHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhccCCC
Q 002615 8 HGEELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMH 86 (900)
Q Consensus 8 ~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~ 86 (900)
...++++...|++|..++.. ++.++..|+++++.. ..++..+++.|+++++|++.++|+++..++..... ...
T Consensus 236 ~~~~~~l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~ 309 (541)
T TIGR03205 236 GDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQ----RFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSL--EKR 309 (541)
T ss_pred CCCceEEEeccHHHHHHHHHHHHHHHhcCCEEEecC----CCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccc--ccc
Confidence 34579999999999988755 788999999998875 56899999999999999999999999988753221 123
Q ss_pred CCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEEEEec
Q 002615 87 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE 166 (900)
Q Consensus 87 ~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 166 (900)
.+++||.++.||+++++++.+.+.+.+ +.++++.||+||++..++...... .....++|+|++++.+++.+
T Consensus 310 ~~~~l~~i~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~--------~~~~~~~G~~~~~~~~~v~~ 380 (541)
T TIGR03205 310 DLSSLATIGSGGAPLPVEVANFFERKT-GLKLKSGWGMTETCSPGTGHPPEG--------PDKPGSIGLMLPGIELDVVS 380 (541)
T ss_pred CccccceEEEccccCCHHHHHHHHHHh-CCCeecccccccCCcccccCCCCC--------CCCCCCcceeccCceeEEEe
Confidence 367899999999999999999888877 689999999999987665432111 11345789999999988753
Q ss_pred --CCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcccC
Q 002615 167 --SDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 241 (900)
Q Consensus 167 --~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 241 (900)
+++ +.++.|||+++|+.++.||+++|+.+.+.|. .+||+|||+++++++|+++++||.|
T Consensus 381 ~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~----------------~~~~~TGD~~~~~~~g~l~i~GR~~ 444 (541)
T TIGR03205 381 LDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFV----------------GDRFLTGDIGYMDTDGYFFLVDRKK 444 (541)
T ss_pred cCCCCccCCCCCeeEEEEecCCccccccCChhhhHhhhc----------------cCCcccCceEEEcCCceEEEEcccc
Confidence 332 3456799999999999999999998887762 4689999999999999999999999
Q ss_pred CcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCEEE
Q 002615 242 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 321 (900)
Q Consensus 242 d~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~~~ 321 (900)
|+||++|++|+|.+||+++.+|+.|.+++|++.+++..++.+++++++...... ...++++++++++|+.|++|..++
T Consensus 445 ~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~~~~~l~~~~~P~~i~ 522 (541)
T TIGR03205 445 DMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKP--FSLDELRAFLAGKLGKHELPVAVE 522 (541)
T ss_pred CeEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCCCc--CCHHHHHHHHHhhcccccCCcEEE
Confidence 999999999999999999999999999999998877666788888887754321 123678999999999999999999
Q ss_pred EcCCcCCCCCCCcchhhhc
Q 002615 322 FMDSLPMTSSGKVDYASLS 340 (900)
Q Consensus 322 ~v~~lP~t~~GKidr~~L~ 340 (900)
++++||+|++||++|++|+
T Consensus 523 ~~~~iP~t~~gK~~r~~l~ 541 (541)
T TIGR03205 523 FVDELPRTPVGKLSRHELR 541 (541)
T ss_pred EeccCCCCcccceeHhhcC
Confidence 9999999999999999874
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=354.92 Aligned_cols=307 Identities=19% Similarity=0.222 Sum_probs=243.8
Q ss_pred CCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhcc----
Q 002615 8 HGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQH---- 83 (900)
Q Consensus 8 ~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~---- 83 (900)
.+.|++++.+|++|.+++...+.+++.|+++++.+ .++..+++.|+++++|+++++|.+++.+........
T Consensus 345 ~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~-----~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~ 419 (746)
T PTZ00342 345 YNPKTHLSYLPISHIYERVIAYLSFMLGGTINIWS-----KDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLP 419 (746)
T ss_pred CCCCeEEEeCcHHHHHHHHHHHHHHHcCCEEEEeC-----CCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcC
Confidence 35689999999999999987888999999999875 278899999999999999999999999875321100
Q ss_pred ------------------------------------CCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCcccc
Q 002615 84 ------------------------------------NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEV 127 (900)
Q Consensus 84 ------------------------------------~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~ 127 (900)
.....++||.+++||+|+++++.+.|.+.+ ++.+++.||+||+
T Consensus 420 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~-g~~i~~gYGlTEt 498 (746)
T PTZ00342 420 PLKRFLVKKILSLRKSNNNGGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLL-NVNYYQGYGLTET 498 (746)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhc-CCCEEEeeccCcc
Confidence 000126899999999999999999998877 7899999999999
Q ss_pred ccccceecccCCccccccCCCCcceeeecc-CCcEEEEecCCC----CCCCccEEEEccccccccccCCCCCCccchhcc
Q 002615 128 SGDCTYFDCKRLPSILEMSTLKSVPIGLPI-SNCDIVLVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKL 202 (900)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~-~~~~~~i~d~~~----~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~ 202 (900)
++.++.... ......++|+|+ ++++++++|.+. ..++.|||+++|++++.||+++|+.|++.|..
T Consensus 499 ~~~~~~~~~---------~~~~~gsvG~p~~pg~e~ki~d~~~~~~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~- 568 (746)
T PTZ00342 499 TGPIFVQHA---------DDNNTESIGGPISPNTKYKVRTWETYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTE- 568 (746)
T ss_pred cceeeeccC---------CCCCcccccCcCCCcEEEEEecccccccCCCCCceEEEEecCcccccccCChhhhhhhcCc-
Confidence 866553221 112557899998 999999997332 23456999999999999999999999998843
Q ss_pred CCcccccCcCCCCCcceEecCceEEEccCCcEEEEcccCCcEEE-CceeeChHHHHHHHhCCCCeeEEEEEEeecCCceE
Q 002615 203 HNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKI-NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELV 281 (900)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~ 281 (900)
++||+|||+|++|+||+|+|+||+||+||+ +|++|+|.+||+++.+||.|.+|+|++.... .
T Consensus 569 --------------dGW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~---~ 631 (746)
T PTZ00342 569 --------------DGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSM---D 631 (746)
T ss_pred --------------CCcccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCc---c
Confidence 689999999999999999999999999997 7999999999999999999999999986432 2
Q ss_pred EEEEEEEecCCC------------------Cch-H----------HHHHHHHHHH-----HhhCCCCccCCEEEEcCC-c
Q 002615 282 ILVAFIVLKEKK------------------TSS-E----------IFLSSIKSWV-----SSKLPLAMIPNRFVFMDS-L 326 (900)
Q Consensus 282 ~l~~~v~~~~~~------------------~~~-~----------~~~~~l~~~l-----~~~l~~~~~P~~~~~v~~-l 326 (900)
.++|+|+++... ... + .+.+.+++.+ +..|+.|.+++.|.++.+ |
T Consensus 632 ~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~ 711 (746)
T PTZ00342 632 GPLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLTDETINNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVW 711 (746)
T ss_pred ccEEEEECCHHHHHHHHHhcCCccccccCcccHHHHhhhhhhccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCC
Confidence 578888775310 000 0 1122222222 236999999999988753 3
Q ss_pred ----CCCCCCCcchhhhcccccccc
Q 002615 327 ----PMTSSGKVDYASLSASTSFTI 347 (900)
Q Consensus 327 ----P~t~~GKidr~~L~~~~~~~~ 347 (900)
-+||+.|+.|+.+.+.|+..+
T Consensus 712 t~~~~lTpt~KlkR~~v~~~y~~~i 736 (746)
T PTZ00342 712 DTNNYLTPTFKVKRFYVFKDYAFFI 736 (746)
T ss_pred CCCCccChhhhhhHHHHHHHHHHHH
Confidence 289999999999998776443
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=354.32 Aligned_cols=303 Identities=21% Similarity=0.235 Sum_probs=250.9
Q ss_pred CCCC-cEEEEccCcchHhHHHH-HHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhccC
Q 002615 7 LHGE-ELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHN 84 (900)
Q Consensus 7 ~~~~-d~~l~~~p~~~~~~~~~-~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~~ 84 (900)
+.++ ++++..+|++|.+++.. .+.++..|++.++... ..++..+++.++++++|++.++|+++..+.+.....
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-- 324 (560)
T PRK08751 250 LEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISN---PRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFD-- 324 (560)
T ss_pred cCCCCceEEEecChHHHHHHHHhhhhHhhccceEEEecC---cCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcC--
Confidence 3344 57788899999988754 6677778888777642 357889999999999999999999999888643221
Q ss_pred CCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEEEE
Q 002615 85 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 164 (900)
Q Consensus 85 ~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 164 (900)
..++++||.+++||+++++.+.+.|.+.+ ++.+++.||+||++..++...... .....++|.|++++.+++
T Consensus 325 ~~~l~~lr~v~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~--------~~~~~~vG~~~~~~~v~i 395 (560)
T PRK08751 325 QIDFSSLKMTLGGGMAVQRSVAERWKQVT-GLTLVEAYGLTETSPAACINPLTL--------KEYNGSIGLPIPSTDACI 395 (560)
T ss_pred CcchhhheeeeeCCCCCCHHHHHHHHHHh-CCeEEEeeccccCCCceecccccc--------cccCCCcCccCCCceEEE
Confidence 23467999999999999999999998877 789999999999987654322110 113457899999999999
Q ss_pred ecCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcccC
Q 002615 165 VESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 241 (900)
Q Consensus 165 ~d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 241 (900)
+|+++ +.+..|||+++|+.+++||+++|+.+...|. .++||+|||+|+++++|.++++||.|
T Consensus 396 ~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~---------------~~g~~~TGD~~~~~~~g~l~i~GR~~ 460 (560)
T PRK08751 396 KDDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMD---------------ADGWLHTGDIARMDEQGFVYIVDRKK 460 (560)
T ss_pred ECCCCCCCCCCCceEEEEecCccchhhcCChhhhhhccc---------------cCCCccccceEEEcCCceEEEEeech
Confidence 98765 3456799999999999999999998877662 25799999999999999999999999
Q ss_pred CcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCEEE
Q 002615 242 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 321 (900)
Q Consensus 242 d~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~~~ 321 (900)
|+||++|++|+|.+||++|.++|.|.+++|++.++...++.++++++.+... ...++++++++++++.|++|..++
T Consensus 461 d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~~~~----~~~~~l~~~~~~~l~~~~~P~~v~ 536 (560)
T PRK08751 461 DMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKDPA----LTAEDVKAHARANLTGYKQPRIIE 536 (560)
T ss_pred hheeECCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcCCCC----CCHHHHHHHHHHhhhhccCCeEEE
Confidence 9999999999999999999999999999999988776666677777654322 123578899999999999999999
Q ss_pred EcCCcCCCCCCCcchhhhccc
Q 002615 322 FMDSLPMTSSGKVDYASLSAS 342 (900)
Q Consensus 322 ~v~~lP~t~~GKidr~~L~~~ 342 (900)
++++||+|++||++|++|++.
T Consensus 537 ~v~~lP~t~~gKv~r~~L~~~ 557 (560)
T PRK08751 537 FRKELPKTNVGKILRRELRDA 557 (560)
T ss_pred EhhhCCCCccccccHHHHHHh
Confidence 999999999999999999764
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=351.88 Aligned_cols=300 Identities=21% Similarity=0.248 Sum_probs=252.7
Q ss_pred CcEEEEccCcchHhHH-HHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhccCCCCC
Q 002615 10 EELLLFKTSISFIDHL-QEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVP 88 (900)
Q Consensus 10 ~d~~l~~~p~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~ 88 (900)
.++++..+|++|.+++ ...+.++..|++.++.+. ..++..+++.++++++|.+.++|+++..+....... ...+
T Consensus 252 ~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~--~~~~ 326 (557)
T PRK07059 252 QLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPN---PRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFD--KLDF 326 (557)
T ss_pred CcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecC---CcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcC--cCCc
Confidence 3567888999998876 457788889998777642 357888999999999999999999999988653321 2346
Q ss_pred CCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEEEEecCC
Q 002615 89 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD 168 (900)
Q Consensus 89 ~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 168 (900)
+++|.++.||+++++.+.+.|.+.+ ++++++.||+||++.+++..... ......++|+|++++.++++|++
T Consensus 327 ~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~--------~~~~~~~vG~p~~g~~v~i~d~~ 397 (557)
T PRK07059 327 SKLIVANGGGMAVQRPVAERWLEMT-GCPITEGYGLSETSPVATCNPVD--------ATEFSGTIGLPLPSTEVSIRDDD 397 (557)
T ss_pred hhheEEEeccccCCHHHHHHHHHHh-CCCeeeccccccccchhhcCCCC--------CCCcCCcccCccCCcEEEEECCC
Confidence 7999999999999999999998877 78999999999998776543211 11134679999999999999876
Q ss_pred C---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcccCCcEE
Q 002615 169 T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIK 245 (900)
Q Consensus 169 ~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik 245 (900)
+ +.+..|||+++|+.++.||+++++.+...|. .++||+|||+++++++|.++++||+||+||
T Consensus 398 ~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~---------------~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~ 462 (557)
T PRK07059 398 GNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMT---------------ADGFFRTGDVGVMDERGYTKIVDRKKDMIL 462 (557)
T ss_pred CCCCCCCCceEEEEeCCccchhhhcCHHHHhhhcc---------------cCCceecCcEEEEcCCCcEEEecccccceE
Confidence 5 3456799999999999999999988876663 267999999999999999999999999999
Q ss_pred ECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCEEEEcCC
Q 002615 246 INGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDS 325 (900)
Q Consensus 246 ~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~~~~v~~ 325 (900)
++|++|+|.+||++|.++|+|.+++|++.++...++.++++++...... ..+++++++++.|+.+++|..++++++
T Consensus 463 ~~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~~~~----~~~~l~~~~~~~l~~~~~P~~i~~v~~ 538 (557)
T PRK07059 463 VSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKDPAL----TEEDVKAFCKERLTNYKRPKFVEFRTE 538 (557)
T ss_pred ECCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCCCCC----CHHHHHHHHHHhcccccCCcEEEEecc
Confidence 9999999999999999999999999999888777778888888654321 235788999999999999999999999
Q ss_pred cCCCCCCCcchhhhccc
Q 002615 326 LPMTSSGKVDYASLSAS 342 (900)
Q Consensus 326 lP~t~~GKidr~~L~~~ 342 (900)
+|+|++||++|++|+++
T Consensus 539 ~P~t~~GK~~r~~L~~~ 555 (557)
T PRK07059 539 LPKTNVGKILRRELRDG 555 (557)
T ss_pred CCCCcccceeHHHHHhh
Confidence 99999999999999753
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=347.30 Aligned_cols=307 Identities=21% Similarity=0.260 Sum_probs=253.7
Q ss_pred CCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHH-HHHHHHhhccCCC
Q 002615 8 HGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMR-VVLPALQSQHNMH 86 (900)
Q Consensus 8 ~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~-~l~~~~~~~~~~~ 86 (900)
.++++++..+|++|..++..++.+|+.|+++++.+.. ..++..+++.++++++|++.++|..+. .+..... .....
T Consensus 217 ~~~~~~~~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~-~~~~~ 293 (533)
T PRK07798 217 GPGMRRFPAPPLMHGAGQWAAFAALFSGQTVVLLPDV--RFDADEVWRTIEREKVNVITIVGDAMARPLLDALE-ARGPY 293 (533)
T ss_pred CCCceEEEecchhhhhhHHHHHHHHhcCceEEEecCC--CcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhc-ccccC
Confidence 6789999999999999999999999999999998633 568999999999999999999987664 3444333 11123
Q ss_pred CCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceee--eccCCcEEEE
Q 002615 87 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIG--LPISNCDIVL 164 (900)
Q Consensus 87 ~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~p~~~~~~~i 164 (900)
.++++|.+++||+++++++.+.+.+.+++..+++.||+||++..++.... . ...+.| ++.++..+++
T Consensus 294 ~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~-~----------~~~~~g~~~~~~~~~~~i 362 (533)
T PRK07798 294 DLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVA-K----------GAVHTGGPRFTIGPRTVV 362 (533)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccCCC-C----------CCccCCCCccCCCceEEE
Confidence 46899999999999999999999999988999999999998654442210 0 112233 7888999999
Q ss_pred ecCCCCC---CCc--cEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcc
Q 002615 165 VESDTVK---PDE--GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 239 (900)
Q Consensus 165 ~d~~~~~---~~~--GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 239 (900)
+++++.+ +.. |+++ .++.++.||+++++.+...|... ++.+||+|||+++++++|.++++||
T Consensus 363 ~~~~~~~~~~g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~------------~~~~~~~TGD~~~~~~~g~l~~~GR 429 (533)
T PRK07798 363 LDEDGNPVEPGSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTI------------DGVRYAIPGDRARVEADGTITLLGR 429 (533)
T ss_pred ECCCCCCCCCCCCCeeEEE-eecCccccccCChhhhHHhhccC------------CCCceEEcCcEEEEcCCCcEEEEcc
Confidence 9877642 333 5665 45678999999999998887542 2468999999999999999999999
Q ss_pred cCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCE
Q 002615 240 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 319 (900)
Q Consensus 240 ~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~ 319 (900)
.|++||++|++|+|.+||+++.++|.|.+++|++.++...+..+++++++++.... ..++|+++++++|+.|++|..
T Consensus 430 ~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~l~~~l~~~~~P~~ 506 (533)
T PRK07798 430 GSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARP---DLAELRAHCRSSLAGYKVPRA 506 (533)
T ss_pred ccceEecCCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEEEEEECCCCCC---CHHHHHHHHhhhcccCCCCeE
Confidence 99999999999999999999999999999999988776666778888887654322 246899999999999999999
Q ss_pred EEEcCCcCCCCCCCcchhhhccccc
Q 002615 320 FVFMDSLPMTSSGKVDYASLSASTS 344 (900)
Q Consensus 320 ~~~v~~lP~t~~GKidr~~L~~~~~ 344 (900)
++++++||+|++||++|++|+++..
T Consensus 507 i~~~~~iP~t~~GK~~~~~~~~~~~ 531 (533)
T PRK07798 507 IWFVDEVQRSPAGKADYRWAKEQAA 531 (533)
T ss_pred EEEcccCCCCCcchhhHHHHhhhhc
Confidence 9999999999999999999998654
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=358.98 Aligned_cols=321 Identities=18% Similarity=0.240 Sum_probs=246.1
Q ss_pred CCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhc----HHHHHHHHHHcCeeEEEecHHHHHHHHHHHh
Q 002615 5 YPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKN----LISIIHFLQAYSISRLTTVPSLMRVVLPALQ 80 (900)
Q Consensus 5 ~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~----~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~ 80 (900)
.+++++|+++..+|++|.+++...+..+..|+++.+..+..+... +..++..++++++|++.++|.+++.+.....
T Consensus 287 ~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~ 366 (696)
T PLN02387 287 PKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVR 366 (696)
T ss_pred CCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHH
Confidence 357899999999999999998876677888998887643221111 2345668899999999999999999875432
Q ss_pred hccC---------------------------------------------CCCCCCcCEEEEeccCCChhhHHHHHhhCCC
Q 002615 81 SQHN---------------------------------------------MHVPSSLKLLVLSGEVLPLSMWDIISKLFPN 115 (900)
Q Consensus 81 ~~~~---------------------------------------------~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~ 115 (900)
.... ....++||.+++||+++++++.+.+...+ +
T Consensus 367 ~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~-g 445 (696)
T PLN02387 367 KKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICL-G 445 (696)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHc-C
Confidence 1100 00015899999999999999988777666 7
Q ss_pred ceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEEEEec-CCC------CCCCccEEEEccccccccc
Q 002615 116 ISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE-SDT------VKPDEGEIYAGGLCLSNGY 188 (900)
Q Consensus 116 ~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~------~~~~~GEl~v~g~~~~~gY 188 (900)
+.+++.||+||+++.++..... .....++|+|+++++++|+| +++ .+.+.|||+|+|++++.||
T Consensus 446 ~~v~~~YG~TEt~~~~~~~~~~---------~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY 516 (696)
T PLN02387 446 APIGQGYGLTETCAGATFSEWD---------DTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGY 516 (696)
T ss_pred CCeeEeechhhcccceeecCcc---------cCCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccchh
Confidence 8999999999998766543211 12346799999999999997 332 2345699999999999999
Q ss_pred cCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcccCCcEEE-CceeeChHHHHHHHhCCCCee
Q 002615 189 FSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKI-NGQRMALEEIEHTLRGHPDVV 267 (900)
Q Consensus 189 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~rv~~~~iE~~l~~~~~v~ 267 (900)
+++|+.|.+.|.... ++.+||+|||+|++|+||+|+|+||+||+||+ +|++|+|.+||++|.+||.|.
T Consensus 517 ~~~pe~T~~~f~~d~-----------~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~ 585 (696)
T PLN02387 517 FKNQEKTDEVYKVDE-----------RGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVD 585 (696)
T ss_pred cCCHHHHhhhhcccc-----------CCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCee
Confidence 999999999884311 13469999999999999999999999999998 699999999999999999999
Q ss_pred EEEEEEeecCCceEEEEEEEEecCCC------------C------chHHHHHHHHHHH-----HhhCCCCccCCEEEEcC
Q 002615 268 DTAVVSHKHQGELVILVAFIVLKEKK------------T------SSEIFLSSIKSWV-----SSKLPLAMIPNRFVFMD 324 (900)
Q Consensus 268 ~~~v~~~~~~~~~~~l~~~v~~~~~~------------~------~~~~~~~~l~~~l-----~~~l~~~~~P~~~~~v~ 324 (900)
+++|++.+.. ..++|+|++.... . ..+...+++.+.+ +.+|+.+.+|+.|.+++
T Consensus 586 ~~~V~g~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~ 662 (696)
T PLN02387 586 NIMVHADPFH---SYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLP 662 (696)
T ss_pred EEEEEecCCc---ceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEEC
Confidence 9999987633 2578888875321 0 0112223333333 34699999999999987
Q ss_pred CcC------CCCCCCcchhhhcccccccccc
Q 002615 325 SLP------MTSSGKVDYASLSASTSFTISA 349 (900)
Q Consensus 325 ~lP------~t~~GKidr~~L~~~~~~~~~~ 349 (900)
+-. +|++.|+.|+.+.+.|+..++.
T Consensus 663 ~~~t~~~g~lT~t~K~~R~~i~~~y~~~i~~ 693 (696)
T PLN02387 663 EPWTPESGLVTAALKLKREQIRKKFKDDLKK 693 (696)
T ss_pred CCCCCCCCcCChhhhhhhHHHHHHHHHHHHH
Confidence 633 6888899999999888766543
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=349.68 Aligned_cols=312 Identities=21% Similarity=0.282 Sum_probs=254.5
Q ss_pred CCCCCCcEEEEccCcchHhHHH-HHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhcc
Q 002615 5 YPLHGEELLLFKTSISFIDHLQ-EFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQH 83 (900)
Q Consensus 5 ~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~ 83 (900)
..+.++|+++..+|++|..++. .++.++..|+++++.+ ..++..++..++++++|.+.++|..+..+......
T Consensus 246 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~----~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~-- 319 (567)
T PRK06178 246 VVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLA----RWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRF-- 319 (567)
T ss_pred ccCCCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeC----CCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCC--
Confidence 5678899999999999999974 5888999999999986 57899999999999999999999999888764321
Q ss_pred CCCCCCCcCEEEEe--ccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcE
Q 002615 84 NMHVPSSLKLLVLS--GEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161 (900)
Q Consensus 84 ~~~~~~~lr~v~~g--Ge~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 161 (900)
...+++++|.+..+ |+++++++.+.|.+.++...+.+.||+||++..++......... ......+.++|+|+++++
T Consensus 320 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~--~~~~~~~~~vG~p~~g~~ 397 (567)
T PRK06178 320 AEYDLSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDD--FDLLSQPVFVGLPVPGTE 397 (567)
T ss_pred CCCCcchheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccceeccccccCc--cccccCCcccccccCCcE
Confidence 12335678876544 59999999999998885444446899999986554322111000 001124567999999999
Q ss_pred EEEecCC-C---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEE
Q 002615 162 IVLVESD-T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFL 237 (900)
Q Consensus 162 ~~i~d~~-~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~ 237 (900)
++++|++ + +.++.|||+++|+.++.||+++++.+...| .++||+|||+++++++|.++|+
T Consensus 398 v~v~d~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~----------------~dg~~~TGDl~~~~~~g~l~i~ 461 (567)
T PRK06178 398 FKICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEAL----------------RDGWLHTGDIGKIDEQGFLHYL 461 (567)
T ss_pred EEEEcCCCCCcCCCCCceEEEEECCcccccccCChhhhhhcc----------------cCCceeecceEEEecCCeEEEE
Confidence 9999844 2 346679999999999999999998887665 2469999999999999999999
Q ss_pred cccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccC
Q 002615 238 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP 317 (900)
Q Consensus 238 GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P 317 (900)
||+||+||++|++|+|.+||+++.+++.|.+++|++..+...++.+++++++++.... ..++|+++++++++.+++|
T Consensus 462 GR~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~---~~~~l~~~~~~~l~~~~~p 538 (567)
T PRK06178 462 GRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADL---TAAALQAWCRENMAVYKVP 538 (567)
T ss_pred ecccccEEECCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCCCcC---CHHHHHHHHHhcCcccCCc
Confidence 9999999999999999999999999999999999988776666778888887654332 2367999999999999999
Q ss_pred CEEEEcCCcCCCCCCCcchhhhccccc
Q 002615 318 NRFVFMDSLPMTSSGKVDYASLSASTS 344 (900)
Q Consensus 318 ~~~~~v~~lP~t~~GKidr~~L~~~~~ 344 (900)
. +++++++|+|++||++|++|+++++
T Consensus 539 ~-i~~v~~iP~t~~GKv~r~~l~~~~~ 564 (567)
T PRK06178 539 E-IRIVDALPMTATGKVRKQDLQALAE 564 (567)
T ss_pred e-EEEeccCCCCCccceeHHHHHHHHH
Confidence 6 8889999999999999999987654
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=358.08 Aligned_cols=318 Identities=19% Similarity=0.267 Sum_probs=246.4
Q ss_pred cCCCC--CCcEEEEccCcchHhHHH-HHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHh
Q 002615 4 LYPLH--GEELLLFKTSISFIDHLQ-EFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQ 80 (900)
Q Consensus 4 ~~~~~--~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~ 80 (900)
.+++. .+|++++++|++|.+++. .++.+|+.|+++++.+.......+..+++.++++++|+++++|++++.|++...
T Consensus 244 ~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~ 323 (614)
T PRK08180 244 TFPFLAEEPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALE 323 (614)
T ss_pred hccccCCCCcEEEEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHH
Confidence 34543 568999999999998874 578899999999997421112345578889999999999999999999987543
Q ss_pred hcc--CCCCCCCcCEEEEeccCCChhhHHHHHhh----C-CCceEEeecCccccccccceecccCCccccccCCCCccee
Q 002615 81 SQH--NMHVPSSLKLLVLSGEVLPLSMWDIISKL----F-PNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPI 153 (900)
Q Consensus 81 ~~~--~~~~~~~lr~v~~gGe~l~~~~~~~~~~~----~-~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (900)
... ....+++||.+++||+++++++.+.+.+. + .++.+++.||+||++.+++..... .....++
T Consensus 324 ~~~~~~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~---------~~~~~sv 394 (614)
T PRK08180 324 RDAALRRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGP---------LSRAGNI 394 (614)
T ss_pred hchhhhhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccCCceEecccc---------cCCCCcc
Confidence 321 11236899999999999999999998874 2 247899999999998766543211 1145679
Q ss_pred eeccCCcEEEEecCCCCCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEE----c
Q 002615 154 GLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARR----I 229 (900)
Q Consensus 154 G~p~~~~~~~i~d~~~~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~----~ 229 (900)
|+|+++++++++++ +..|||+|+|+.++.||+++|+.+.+.|. .++||+|||+|++ +
T Consensus 395 G~p~pg~~v~i~d~----~~~GEi~vrg~~v~~GY~~~p~~t~~~~~---------------~dgw~~TGDlg~~~~~~d 455 (614)
T PRK08180 395 GLPAPGCEVKLVPV----GGKLEVRVKGPNVTPGYWRAPELTAEAFD---------------EEGYYRSGDAVRFVDPAD 455 (614)
T ss_pred cCccCCcEEEEecC----CCCcEEEEecCccchhhcCChhHhHhhcc---------------cCCceeccceEEecCCcC
Confidence 99999999999974 34599999999999999999999888773 2689999999999 4
Q ss_pred cCCcEEEEcccCCcEEE-CceeeC--hHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCC-----------c
Q 002615 230 QSGDLVFLGRKDRTIKI-NGQRMA--LEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKT-----------S 295 (900)
Q Consensus 230 ~~G~l~~~GR~dd~ik~-~G~rv~--~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~-----------~ 295 (900)
++|+|+|+||+||+||+ +|++|+ +.|||.++.+||.|.+++|++.+++ .+.|+|+++++.. .
T Consensus 456 ~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~~----~~~a~V~~~~~~~~~~~~~~~~~~~ 531 (614)
T PRK08180 456 PERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDRD----EIGLLVFPNLDACRRLAGLLADASL 531 (614)
T ss_pred CCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCCC----ceEEEEEcCHHHHHHHHhhcccCCH
Confidence 68999999999999987 799877 7788899999999999999998765 4678887754310 0
Q ss_pred -hHHHHHHHHHHHHhhCCCCc--------cCCEEEEcCCcCCCCCC------CcchhhhccccccccccccCc
Q 002615 296 -SEIFLSSIKSWVSSKLPLAM--------IPNRFVFMDSLPMTSSG------KVDYASLSASTSFTISAQHDA 353 (900)
Q Consensus 296 -~~~~~~~l~~~l~~~l~~~~--------~P~~~~~v~~lP~t~~G------Kidr~~L~~~~~~~~~~~~~~ 353 (900)
.....++|++++++.|+.+. .|.++++++++|++++| |+.|+++.+.|+..++..|..
T Consensus 532 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~p~~~~gk~t~~~~~~R~~~~~~y~~~i~~lY~~ 604 (614)
T PRK08180 532 AEVLAHPAVRAAFRERLARLNAQATGSSTRVARALLLDEPPSLDAGEITDKGYINQRAVLARRAALVEALYAD 604 (614)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhccccHhheeEEEEecCCCCCccCccCccccccHHHHHHHhHHHHHHHhCC
Confidence 00112456666666665555 89999999999987655 566778888887777766653
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=345.57 Aligned_cols=316 Identities=19% Similarity=0.298 Sum_probs=248.7
Q ss_pred cCCCCCCcEEEEccCcchHhHHHHHHH-HHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 4 LYPLHGEELLLFKTSISFIDHLQEFLS-AILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 4 ~~~~~~~d~~l~~~p~~~~~~~~~~~~-~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
.+++.++|+++..+|++|..++...+. +++.|+++++. ..++..+++.++++++|++.++|++++.+.......
T Consensus 230 ~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~ 304 (567)
T PLN02479 230 IWGMNEGAVYLWTLPMFHCNGWCFTWTLAALCGTNICLR-----QVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSE 304 (567)
T ss_pred hcCCCCCCEEEEecchhhhhhHHHHHHHHhhcCceEecc-----CCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhc
Confidence 467888999999999999988766443 45556555543 468999999999999999999999999988654322
Q ss_pred cCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCC-cccc-ccCCCCcceeeeccCCc
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRL-PSIL-EMSTLKSVPIGLPISNC 160 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~-~~~~-~~~~~~~~~~G~p~~~~ 160 (900)
.. ..++++|.++++|+++++.+.+.|.+. +.++++.||+||+++.++....... .... ..........|.|.+++
T Consensus 305 ~~-~~~~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~ 381 (567)
T PLN02479 305 TI-LPLPRVVHVMTAGAAPPPSVLFAMSEK--GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGL 381 (567)
T ss_pred cc-ccccceeEEEEcCCCCCHHHHHHHHhc--CCceecccccccccccccceeccccccccCcccccccccccCCCcCCc
Confidence 11 236789999999999999999998775 6899999999998655443211100 0000 00001123467777777
Q ss_pred E-EEEecCC-CC---CC--CccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCc
Q 002615 161 D-IVLVESD-TV---KP--DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGD 233 (900)
Q Consensus 161 ~-~~i~d~~-~~---~~--~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~ 233 (900)
. ++++|++ .. .+ +.|||+++|+.++.||+++|+.+.+.|. ++||+|||+++++++|+
T Consensus 382 ~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~----------------~g~~~TGDl~~~~~~g~ 445 (567)
T PLN02479 382 EGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFA----------------NGWFHSGDLGVKHPDGY 445 (567)
T ss_pred CceeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhc----------------CCceecceeEEEcCCcc
Confidence 5 7787743 21 22 4699999999999999999999998872 47999999999999999
Q ss_pred EEEEcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCc--hHHHHHHHHHHHHhhC
Q 002615 234 LVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTS--SEIFLSSIKSWVSSKL 311 (900)
Q Consensus 234 l~~~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~--~~~~~~~l~~~l~~~l 311 (900)
++|+||.||+||++|+||+|.|||.+|.+||.|.+++|++..+...++.+++++++...... .+...++|+++++++|
T Consensus 446 l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l 525 (567)
T PLN02479 446 IEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERL 525 (567)
T ss_pred EEEeccccceEEeCCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCcccccchhhhHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999998776666778888887654321 1344578999999999
Q ss_pred CCCccCCEEEEcCCcCCCCCCCcchhhhccccc
Q 002615 312 PLAMIPNRFVFMDSLPMTSSGKVDYASLSASTS 344 (900)
Q Consensus 312 ~~~~~P~~~~~v~~lP~t~~GKidr~~L~~~~~ 344 (900)
|.|++|..+++ ++||+|++||++|++|++.+.
T Consensus 526 ~~~~~P~~~~~-~~iP~t~~gKv~r~~L~~~~~ 557 (567)
T PLN02479 526 PAYWVPKSVVF-GPLPKTATGKIQKHVLRAKAK 557 (567)
T ss_pred ccccCCceEEe-ccCCCCCccCeeHHHHHHHHH
Confidence 99999998876 679999999999999986543
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=346.14 Aligned_cols=302 Identities=24% Similarity=0.275 Sum_probs=252.7
Q ss_pred CCCcEEEEccCcchHhHH-HHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhccCCC
Q 002615 8 HGEELLLFKTSISFIDHL-QEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMH 86 (900)
Q Consensus 8 ~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~ 86 (900)
..+++++..+|++|.+++ ...+.++..|+++++... ..++..+++.++++++|++.++|++++.+....... ..
T Consensus 248 ~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~---~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~--~~ 322 (560)
T PRK08974 248 PGKELVVTALPLYHIFALTVNCLLFIELGGQNLLITN---PRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQ--EL 322 (560)
T ss_pred CCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecC---ccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcc--cC
Confidence 346788899999998876 446778889998877632 357788999999999999999999999988643221 23
Q ss_pred CCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEEEEec
Q 002615 87 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE 166 (900)
Q Consensus 87 ~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 166 (900)
.+++||.+++||+++++.+.+.|.+.+ ++.+++.||+||++..++...... .....++|.|++++.+++++
T Consensus 323 ~~~~lr~~~~gg~~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~--------~~~~~~~G~~~~~~~~~i~~ 393 (560)
T PRK08974 323 DFSSLKLSVGGGMAVQQAVAERWVKLT-GQYLLEGYGLTECSPLVSVNPYDL--------DYYSGSIGLPVPSTEIKLVD 393 (560)
T ss_pred CccceeEEEecCccCCHHHHHHHHHHh-CCcEEeeecccccCceeeccCCCC--------cccCCccccCcCCCEEEEEC
Confidence 367999999999999999999998876 789999999999987666432211 11345799999999999998
Q ss_pred CCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcccCCc
Q 002615 167 SDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 243 (900)
Q Consensus 167 ~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ 243 (900)
+++ +.++.|||+++|+.++.||+++++.+...| .++||+|||+++++++|.++++||+||+
T Consensus 394 ~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~----------------~~g~~~TGDl~~~~~~g~l~i~GR~~d~ 457 (560)
T PRK08974 394 DDGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVI----------------KDGWLATGDIAVMDEEGFLRIVDRKKDM 457 (560)
T ss_pred CCCCCCCCCCceEEEEecCCcchhhcCChhhhhhhh----------------hcCCcccCCEEEEcCCceEEEEecccce
Confidence 765 345679999999999999999998887766 2579999999999999999999999999
Q ss_pred EEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCEEEEc
Q 002615 244 IKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFM 323 (900)
Q Consensus 244 ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~~~~v 323 (900)
|+++|.+|+|.+||++|.+||.|.+++|++.++...+..++++++..+... ..+++++++.++|+.+++|..++++
T Consensus 458 i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~----~~~~l~~~l~~~l~~~~~P~~~~~~ 533 (560)
T PRK08974 458 ILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKDPSL----TEEELITHCRRHLTGYKVPKLVEFR 533 (560)
T ss_pred EEeCCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCCCCC----CHHHHHHHHHhhcccccCCcEEEEh
Confidence 999999999999999999999999999999888777777777776543221 2357889999999999999999999
Q ss_pred CCcCCCCCCCcchhhhcccc
Q 002615 324 DSLPMTSSGKVDYASLSAST 343 (900)
Q Consensus 324 ~~lP~t~~GKidr~~L~~~~ 343 (900)
++||+|++||++|++|++..
T Consensus 534 ~~lP~t~~GK~~r~~l~~~~ 553 (560)
T PRK08974 534 DELPKSNVGKILRRELRDEA 553 (560)
T ss_pred hhCCCCCCCcEeHHHHHHHH
Confidence 99999999999999998644
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=330.40 Aligned_cols=273 Identities=18% Similarity=0.243 Sum_probs=232.5
Q ss_pred ccCCCCCCcEEEEccCcchHhHHH-HHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQ-EFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
+.+++.++|+++..+|++|.+++. .++.+|..|+++++.+ ..++..+++.++++++|++.++|+++..+.+....
T Consensus 135 ~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~----~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~ 210 (414)
T PRK08308 135 EALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIIT----NKNPKFALNILRNTPQHILYAVPLMLHILGRLLPG 210 (414)
T ss_pred HhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecC----CCCHHHHHHHHHHhCCeEEEcCHHHHHHHHhcCCc
Confidence 356788899999999999999874 5899999999999986 56889999999999999999999999998765321
Q ss_pred ccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcE
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161 (900)
Q Consensus 82 ~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 161 (900)
..+++.+++||+++++++.+.+.+. ..+++|.||+||+++++.... .....++|+|+++++
T Consensus 211 ------~~~l~~~~~~G~~l~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~-----------~~~~~~~G~p~~~~~ 271 (414)
T PRK08308 211 ------TFQFHAVMTSGTPLPEAWFYKLRER--TTYMMQQYGCSEAGCVSICPD-----------MKSHLDLGNPLPHVS 271 (414)
T ss_pred ------cccccEEEEccCCCCHHHHHHHHHh--CChhhhccCccccCCeeecCC-----------CCCCCccCccCCCeE
Confidence 2378999999999999999999886 468999999999986443211 113457899999999
Q ss_pred EEEecCCCCCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcccC
Q 002615 162 IVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 241 (900)
Q Consensus 162 ~~i~d~~~~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 241 (900)
+++.+. .+..|||++++. ++||+|||++++++||+++|+||.|
T Consensus 272 ~~~~~~---~~~~gel~v~~~----------------------------------~~~~~TGDl~~~~~dg~l~~~GR~~ 314 (414)
T PRK08308 272 VSAGSD---ENAPEEIVVKMG----------------------------------DKEIFTKDLGYKSERGTLHFMGRMD 314 (414)
T ss_pred EEEecC---CCCCceEEEEcC----------------------------------CceEECCceEEECCCccEEEecccC
Confidence 998743 346699988631 4689999999999999999999999
Q ss_pred CcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCEEE
Q 002615 242 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 321 (900)
Q Consensus 242 d~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~~~ 321 (900)
|+||++|+||+|.|||+++.++|+|.+++|++.+++..++.++++++.+... ..++++++++++||.|++|..++
T Consensus 315 ~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~~~-----~~~~l~~~l~~~l~~~~~P~~i~ 389 (414)
T PRK08308 315 DVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHEEI-----DPVQLREWCIQHLAPYQVPHEIE 389 (414)
T ss_pred CeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCC-----CHHHHHHHHHHhCccccCCcEEE
Confidence 9999999999999999999999999999999988877777788888765421 23578999999999999999999
Q ss_pred EcCCcCCCCCCCcchhhhc
Q 002615 322 FMDSLPMTSSGKVDYASLS 340 (900)
Q Consensus 322 ~v~~lP~t~~GKidr~~L~ 340 (900)
++++||+|++||++|+.|.
T Consensus 390 ~v~~iP~t~~GKi~r~~~~ 408 (414)
T PRK08308 390 SVTEIPKNANGKVSRKLLE 408 (414)
T ss_pred EeccCCCCCCcCeehhhhh
Confidence 9999999999999999553
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=346.83 Aligned_cols=322 Identities=15% Similarity=0.153 Sum_probs=249.5
Q ss_pred cCCCCCCcEEEEccCcchHhHHHH-HHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 4 LYPLHGEELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 4 ~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
.+++.++|+++.++|++|+.++.. ++.++..|+++++.+......+|..+++.+.+++++++..+|.++..+.......
T Consensus 212 ~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~ 291 (579)
T PRK09192 212 GLKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSK 291 (579)
T ss_pred cccCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccc
Confidence 678999999999999999999876 6677899999988754444457899999999999998877666666554332211
Q ss_pred -cCCCCCCCcCEEEEeccCCChhhHHHHHhhCC-----CceEEeecCccccccccceecccCCcccc-------------
Q 002615 83 -HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFP-----NISILNLYGSTEVSGDCTYFDCKRLPSIL------------- 143 (900)
Q Consensus 83 -~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~-----~~~l~~~YG~TE~~~~~~~~~~~~~~~~~------------- 143 (900)
....+++++|.+++||+++++.+++.+.+.++ ...+++.||+||++..++...........
T Consensus 292 ~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (579)
T PRK09192 292 DLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKA 371 (579)
T ss_pred cccccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCcee
Confidence 11234689999999999999999999988763 13599999999998766543221100000
Q ss_pred ------ccCCCCcceeeeccCCcEEEEecCCCC---CCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCC
Q 002615 144 ------EMSTLKSVPIGLPISNCDIVLVESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSC 214 (900)
Q Consensus 144 ------~~~~~~~~~~G~p~~~~~~~i~d~~~~---~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~ 214 (900)
........++|+|++++.++|+|+++. .++.|||+++|+.+++||+++ +.+.+.|.
T Consensus 372 ~~~~~~~~~~~~~~~vG~~~p~~~v~i~d~~~~~~~~g~~Gel~i~g~~~~~gY~~~-~~~~~~~~-------------- 436 (579)
T PRK09192 372 VAPGAETRRVRTFVNCGKALPGHEIEIRNEAGMPLPERVVGHICVRGPSLMSGYFRD-EESQDVLA-------------- 436 (579)
T ss_pred eccCCCCccceeEeecCCcCCCcEEEEECCCCCCCCCCCEEEEEecCCchhhhhcCC-cccccccc--------------
Confidence 000001247899999999999987653 456799999999999999999 55555442
Q ss_pred CCcceEecCceEEEccCCcEEEEcccCCcEEECceeeChHHHHHHHhCCCCee--EEEEEEeecCCceEEEEEEEEecCC
Q 002615 215 GSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVV--DTAVVSHKHQGELVILVAFIVLKEK 292 (900)
Q Consensus 215 ~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~--~~~v~~~~~~~~~~~l~~~v~~~~~ 292 (900)
.++||+|||+|++ ++|+++|+||+||+||++|++|+|.|||++|++||.|. +++|++..++.. ..++++++....
T Consensus 437 -~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~~-~~~~~~v~~~~~ 513 (579)
T PRK09192 437 -ADGWLDTGDLGYL-LDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQENG-EKIVLLVQCRIS 513 (579)
T ss_pred -CCceeeccceeeE-ECCEEEEEeccccEEEECCCccCHHHHHHHHHhcCCccCCcEEEEEeccCCC-eeEEEEEEecCC
Confidence 3679999999998 99999999999999999999999999999999999998 888888777653 467777776543
Q ss_pred CCchHHHHHHHHHHHHhhCC-CCccCCEEEEcC--CcCCCCCCCcchhhhccccccc
Q 002615 293 KTSSEIFLSSIKSWVSSKLP-LAMIPNRFVFMD--SLPMTSSGKVDYASLSASTSFT 346 (900)
Q Consensus 293 ~~~~~~~~~~l~~~l~~~l~-~~~~P~~~~~v~--~lP~t~~GKidr~~L~~~~~~~ 346 (900)
.. ...++|++++++.++ .+++|..++++. +||+|++||++|++|++.+...
T Consensus 514 ~~---~~~~~l~~~~~~~l~~~~~~~~~i~~~~~~~lP~t~~GKv~R~~l~~~~~~~ 567 (579)
T PRK09192 514 DE---ERRGQLIHALAALVRSEFGVEAAVELVPPHSLPRTSSGKLSRAKAKKRYLSG 567 (579)
T ss_pred Ch---HHHHHHHHHHHHHHHHHhCCCceEEEeCCCCcCCCCCcchhHHHHHHHHHcC
Confidence 22 234577888888764 578898888885 8999999999999999877654
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-36 Score=348.94 Aligned_cols=313 Identities=21% Similarity=0.237 Sum_probs=243.5
Q ss_pred CCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhccC-
Q 002615 6 PLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHN- 84 (900)
Q Consensus 6 ~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~~- 84 (900)
+++++|++++.+|++|.++....+.++..|+++++.. .++..+++.|+++++|++.++|.+++.+.........
T Consensus 262 ~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~-----~~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~ 336 (660)
T PLN02430 262 KMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYH-----GDLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQE 336 (660)
T ss_pred CCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeC-----CChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhc
Confidence 5788999999999999998876667789999998874 3677899999999999999999999887653211000
Q ss_pred ----------------------------CC--------------CCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeec
Q 002615 85 ----------------------------MH--------------VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLY 122 (900)
Q Consensus 85 ----------------------------~~--------------~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~Y 122 (900)
.. ..++||.+++||+++++++.+.+ +.++++.+++.|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~-~~~~~~~i~~~Y 415 (660)
T PLN02430 337 LNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFL-RVTSCAFVVQGY 415 (660)
T ss_pred cCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHH-HHhcCCCeeeec
Confidence 00 01589999999999999986655 445457899999
Q ss_pred CccccccccceecccCCccccccCCCCcceeeeccCCcEEEEecCC--C----CCCCccEEEEccccccccccCCCCCCc
Q 002615 123 GSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD--T----VKPDEGEIYAGGLCLSNGYFSESTFMP 196 (900)
Q Consensus 123 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~--~----~~~~~GEl~v~g~~~~~gY~~~~~~~~ 196 (900)
|+||+++.++..... ......++|+|++++++++.|.+ + ..+..|||+|+|++++.||+++|+.|.
T Consensus 416 G~TE~~~~~~~~~~~--------~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~ 487 (660)
T PLN02430 416 GLTETLGPTTLGFPD--------EMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTE 487 (660)
T ss_pred chhhhhhceEeeccc--------cCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHHhh
Confidence 999998765543211 11135679999999999997621 1 233469999999999999999999998
Q ss_pred cchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcccCCcEEE-CceeeChHHHHHHHhCCCCeeEEEEEEee
Q 002615 197 SEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKI-NGQRMALEEIEHTLRGHPDVVDTAVVSHK 275 (900)
Q Consensus 197 ~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~rv~~~~iE~~l~~~~~v~~~~v~~~~ 275 (900)
+.| .++||+|||+|++++||+|+|+||+||+||+ +|++|+|.+||+++.+||.|.+++|++..
T Consensus 488 ~~~----------------~dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~ 551 (660)
T PLN02430 488 EVM----------------KDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDS 551 (660)
T ss_pred hhh----------------hccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecC
Confidence 877 2689999999999999999999999999998 79999999999999999999999999843
Q ss_pred cCCceEEEEEEEEecCCCC-----------------chHHHH----HHHHHHH-HhhCCCCccCCEEEEcCC-c-----C
Q 002615 276 HQGELVILVAFIVLKEKKT-----------------SSEIFL----SSIKSWV-SSKLPLAMIPNRFVFMDS-L-----P 327 (900)
Q Consensus 276 ~~~~~~~l~~~v~~~~~~~-----------------~~~~~~----~~l~~~l-~~~l~~~~~P~~~~~v~~-l-----P 327 (900)
....++|+|+++.... ..+.+. +++.+.. +..|+.|.++..|+++++ | .
T Consensus 552 ---~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~ 628 (660)
T PLN02430 552 ---FKSMLVAVVVPNEENTNKWAKDNGFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDL 628 (660)
T ss_pred ---CcceEEEEEEcCHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCc
Confidence 2347889998764210 011122 2333333 235999999999998764 3 5
Q ss_pred CCCCCCcchhhhcccccccccccc
Q 002615 328 MTSSGKVDYASLSASTSFTISAQH 351 (900)
Q Consensus 328 ~t~~GKidr~~L~~~~~~~~~~~~ 351 (900)
+|+++|+.|+.+.+.|+..++..|
T Consensus 629 lT~t~K~~R~~i~~~y~~~i~~ly 652 (660)
T PLN02430 629 VTATLKKRRNNLLKYYQVEIDEMY 652 (660)
T ss_pred CChhhhhhhHHHHHHHHHHHHHHH
Confidence 899999999999988876665444
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=354.99 Aligned_cols=316 Identities=16% Similarity=0.194 Sum_probs=235.2
Q ss_pred CCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhccC--
Q 002615 7 LHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHN-- 84 (900)
Q Consensus 7 ~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~~-- 84 (900)
++++|++++.+|++|.++.......+..|+++++.++.............++++++|++.++|.+++.+.........
T Consensus 307 ~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~ 386 (700)
T PTZ00216 307 PEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFGSPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPV 386 (700)
T ss_pred CCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEECCHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHHhcc
Confidence 478999999999999988766566678888877643211111111111267899999999999999987653221100
Q ss_pred -------------------------------------CCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCcccc
Q 002615 85 -------------------------------------MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEV 127 (900)
Q Consensus 85 -------------------------------------~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~ 127 (900)
....++||.+++||+++++++.+.++..+ + .++|.||+||+
T Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~-~-~l~~~YG~TEt 464 (700)
T PTZ00216 387 GSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVF-G-MVIQGWGLTET 464 (700)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHh-h-hHhhccCcccc
Confidence 00015899999999999999988777666 5 89999999999
Q ss_pred ccccceecccCCccccccCCCCcceeeeccCCcEEEEecCCC-----CCCCccEEEEccccccccccCCCCCCccchhcc
Q 002615 128 SGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDT-----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKL 202 (900)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~-----~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~ 202 (900)
++.++.... ......++|+|+++++++|+|.++ .+++.|||+|+|++++.||+++|+.|++.|..
T Consensus 465 ~~~~~~~~~---------~~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~- 534 (700)
T PTZ00216 465 VCCGGIQRT---------GDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDE- 534 (700)
T ss_pred cccccccCC---------CCCCCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcCCcccchhcCChhHhhhhccc-
Confidence 866553221 112457899999999999998653 33457999999999999999999999998843
Q ss_pred CCcccccCcCCCCCcceEecCceEEEccCCcEEEEcccCCcEE-ECceeeChHHHHHHHhCCCCeeEE--EEEEeecCCc
Q 002615 203 HNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIK-INGQRMALEEIEHTLRGHPDVVDT--AVVSHKHQGE 279 (900)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik-~~G~rv~~~~iE~~l~~~~~v~~~--~v~~~~~~~~ 279 (900)
++||+|||+|++++||.|+|+||+||+|| .+|++|+|.+||+++.+||.|.++ +|+..++.
T Consensus 535 --------------dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~~-- 598 (700)
T PTZ00216 535 --------------DGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPAR-- 598 (700)
T ss_pred --------------cCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecCC--
Confidence 57999999999999999999999999999 699999999999999999999973 44443322
Q ss_pred eEEEEEEEEecCCC-----------C------chHHHHHHHHH----HH-HhhCCCCccCCEEEEcCC------cCCCCC
Q 002615 280 LVILVAFIVLKEKK-----------T------SSEIFLSSIKS----WV-SSKLPLAMIPNRFVFMDS------LPMTSS 331 (900)
Q Consensus 280 ~~~l~~~v~~~~~~-----------~------~~~~~~~~l~~----~l-~~~l~~~~~P~~~~~v~~------lP~t~~ 331 (900)
..++|++++.... . ..+...+.+.+ .. +..|..|..++.|.++.+ =.+|++
T Consensus 599 -~~l~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~lT~t 677 (700)
T PTZ00216 599 -SYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAA 677 (700)
T ss_pred -ceEEEEEecCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCCCCCCChh
Confidence 3678888875311 0 01112222333 22 246888999999988754 347999
Q ss_pred CCcchhhhcccccccccccc
Q 002615 332 GKVDYASLSASTSFTISAQH 351 (900)
Q Consensus 332 GKidr~~L~~~~~~~~~~~~ 351 (900)
+|+.|+++.+.|+..++..|
T Consensus 678 ~K~~R~~i~~~y~~~i~~ly 697 (700)
T PTZ00216 678 MKLKRRVIDERYADLIKELF 697 (700)
T ss_pred hccchHHHHHHHHHHHHHHh
Confidence 99999999988877665544
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=332.15 Aligned_cols=313 Identities=19% Similarity=0.246 Sum_probs=243.0
Q ss_pred cCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhcc
Q 002615 4 LYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQH 83 (900)
Q Consensus 4 ~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~ 83 (900)
.+++..+|++++.+|++|..++...+...+.|++.++.. ..++..+++.|+++++|++.++|++++.|+.......
T Consensus 217 ~~~~~~~~~~l~~~pl~h~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~ 292 (545)
T PRK08162 217 AWGMPKHPVYLWTLPMFHCNGWCFPWTVAARAGTNVCLR----KVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWR 292 (545)
T ss_pred hcCCCCCCeeEeccCcHhhhhHHHHHHHHHHccEEEEeC----CCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccc
Confidence 356778899999999999998866444445566665554 4789999999999999999999999999986533221
Q ss_pred CCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccC-Cccccc-cCCCCcceeeeccC-Cc
Q 002615 84 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKR-LPSILE-MSTLKSVPIGLPIS-NC 160 (900)
Q Consensus 84 ~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~-~~~~~~-~~~~~~~~~G~p~~-~~ 160 (900)
..+.+++.++++|+++++.+.+.+.+. ++++++.||+||+++.++...... ...... .......+.|.+++ ..
T Consensus 293 --~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 368 (545)
T PRK08162 293 --AGIDHPVHAMVAGAAPPAAVIAKMEEI--GFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQE 368 (545)
T ss_pred --cCCccceEEEECCCCCCHHHHHHHHHh--CCceeecccccccCcceeecccccccccCCccchhhccCCCCcccCCcc
Confidence 123456778899999999999988764 789999999999865444321110 000000 00011234565554 33
Q ss_pred EEEEecCCC-C---C-C-CccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcE
Q 002615 161 DIVLVESDT-V---K-P-DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDL 234 (900)
Q Consensus 161 ~~~i~d~~~-~---~-~-~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l 234 (900)
.++++|++. . . + ..|||+++|+.++.||+++++.+...|. ++||+|||+++++++|.+
T Consensus 369 ~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~~----------------~g~~~TGDl~~~d~dg~l 432 (545)
T PRK08162 369 GVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFA----------------GGWFHTGDLAVLHPDGYI 432 (545)
T ss_pred eEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHhh----------------CCCcccCceEEEcCCccE
Confidence 567777532 2 1 2 2599999999999999999999988772 479999999999999999
Q ss_pred EEEcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCC
Q 002615 235 VFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLA 314 (900)
Q Consensus 235 ~~~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~ 314 (900)
+|+||.||+||++|+||+|.+||+.|.+||.|.+++|++.++...++.+++++++++.... ..+++++++++.||.|
T Consensus 433 ~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~~~l~~~ 509 (545)
T PRK08162 433 KIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASA---TEEEIIAHCREHLAGF 509 (545)
T ss_pred EEEecccceEEeCCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCCCCC---CHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999998877666778888887765432 2468999999999999
Q ss_pred ccCCEEEEcCCcCCCCCCCcchhhhccccc
Q 002615 315 MIPNRFVFMDSLPMTSSGKVDYASLSASTS 344 (900)
Q Consensus 315 ~~P~~~~~v~~lP~t~~GKidr~~L~~~~~ 344 (900)
++|..+++ .++|+|++||++|+.|++.+.
T Consensus 510 ~~P~~~~~-~~iP~t~~gK~~r~~l~~~~~ 538 (545)
T PRK08162 510 KVPKAVVF-GELPKTSTGKIQKFVLREQAK 538 (545)
T ss_pred cCCcEEEe-cccCCCCCcCCcHHHHHHHHh
Confidence 99999875 679999999999999987544
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=346.26 Aligned_cols=313 Identities=17% Similarity=0.204 Sum_probs=235.4
Q ss_pred CcEEEEccCcchHhHHHH-HHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhcc--CCC
Q 002615 10 EELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQH--NMH 86 (900)
Q Consensus 10 ~d~~l~~~p~~~~~~~~~-~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~--~~~ 86 (900)
.|+++.++|++|.+++.. ++.+|..|+++++.+..........+++.++++++|++.++|++++.|++...... ...
T Consensus 264 ~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~ 343 (624)
T PRK12582 264 PPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRS 343 (624)
T ss_pred CceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHH
Confidence 589999999999998755 67889999999997521112233456777899999999999999998876543221 112
Q ss_pred CCCCcCEEEEeccCCChhhHHHHHhhC-----CCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcE
Q 002615 87 VPSSLKLLVLSGEVLPLSMWDIISKLF-----PNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161 (900)
Q Consensus 87 ~~~~lr~v~~gGe~l~~~~~~~~~~~~-----~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 161 (900)
.+++||.+++||+++++++.+.+.+.+ +++.+++.||+||++.+++..... .....++|+|+++++
T Consensus 344 ~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~---------~~~~~svG~p~pg~~ 414 (624)
T PRK12582 344 FFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWD---------TERVGLIGLPLPGVE 414 (624)
T ss_pred HhhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccCC---------CCCCCCCCcCCCCcE
Confidence 357899999999999999999998863 246899999999998654421110 123457899999999
Q ss_pred EEEecCCCCCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEE-c---cCCcEEEE
Q 002615 162 IVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARR-I---QSGDLVFL 237 (900)
Q Consensus 162 ~~i~d~~~~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~-~---~~G~l~~~ 237 (900)
+++++ .++.|||+|+|++++.||+++|+.+.+.|. .++||+|||+|++ + ++|+|+|+
T Consensus 415 v~i~~----~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~---------------~dgw~~TGDlg~~~d~~~~~g~l~i~ 475 (624)
T PRK12582 415 LKLAP----VGDKYEVRVKGPNVTPGYHKDPELTAAAFD---------------EEGFYRLGDAARFVDPDDPEKGLIFD 475 (624)
T ss_pred EEEcc----CCCceEEEEECCcccccccCCccchhhhcC---------------ccCCccccceEEecCCcCCCCceEEe
Confidence 99973 356799999999999999999999988773 2689999999998 4 46999999
Q ss_pred cccCCcEEE-CceeeChHHHH--HHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCC---------C------chHHH
Q 002615 238 GRKDRTIKI-NGQRMALEEIE--HTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKK---------T------SSEIF 299 (900)
Q Consensus 238 GR~dd~ik~-~G~rv~~~~iE--~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~---------~------~~~~~ 299 (900)
||+||+||+ +|++|+|.+|| .++.+||.|.+|+|++.+++. +.+.|++.... . ..+.+
T Consensus 476 GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~~~~----~g~lv~p~~~~~~~~~~~~~~~~~~~~~~~~l 551 (624)
T PRK12582 476 GRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRAF----IGLLAWPNPAACRQLAGDPDAAPEDVVKHPAV 551 (624)
T ss_pred ccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCCCCc----EEEEEecCHHHHHHHHhcCCCCHHHHhcCHHH
Confidence 999999997 79999999885 688899999999999987653 33444332110 0 11112
Q ss_pred HHHHHHH---HHhhCCCCc-cCCEEEEcCCcCC------CCCCCcchhhhccccccccccccCcc
Q 002615 300 LSSIKSW---VSSKLPLAM-IPNRFVFMDSLPM------TSSGKVDYASLSASTSFTISAQHDAD 354 (900)
Q Consensus 300 ~~~l~~~---l~~~l~~~~-~P~~~~~v~~lP~------t~~GKidr~~L~~~~~~~~~~~~~~~ 354 (900)
.+.++.. .++.+|.+. .|.++++++++|+ |++||+.|++..+.|+.+++..|...
T Consensus 552 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~~R~~~~~~y~~~i~~ly~~~ 616 (624)
T PRK12582 552 LAILREGLSAHNAEAGGSSSRIARALLMTEPPSIDAGEITDKGYINQRAVLERRAALVERLYAEP 616 (624)
T ss_pred HHHHHHHHHHHHhhcCCChhheEEEEEeCCCCCccCCcCCccccccHHHHHHHHHHHHHHHhcCC
Confidence 2222222 233456665 9999999998765 56777778888888888887777654
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=337.93 Aligned_cols=330 Identities=18% Similarity=0.217 Sum_probs=237.9
Q ss_pred CCCCcEEEEccCcchHhHHHH-HHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHH-HHHHHHHHhh-cc
Q 002615 7 LHGEELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSL-MRVVLPALQS-QH 83 (900)
Q Consensus 7 ~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~-l~~l~~~~~~-~~ 83 (900)
..++|++++++|++|+.++.. ++.+++.|+++++.++.....+|..+++.+++++++++ .+|++ +..+...... ..
T Consensus 204 ~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~ 282 (578)
T PRK05850 204 PPPDTTVVSWLPFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDM 282 (578)
T ss_pred CCCcceEEEECCCCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhh
Confidence 356889999999999999754 89999999999998654444589999999999999866 45554 4433332211 11
Q ss_pred CCCCCCCcCEEEEeccCCChhhHHHHHhhC-----CCceEEeecCccccccccceecccCCcccc-----c--c------
Q 002615 84 NMHVPSSLKLLVLSGEVLPLSMWDIISKLF-----PNISILNLYGSTEVSGDCTYFDCKRLPSIL-----E--M------ 145 (900)
Q Consensus 84 ~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~-----~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~-----~--~------ 145 (900)
...+++++|.++.||+++++.+.++|.+.| ++..+++.||+||++..+........+... . .
T Consensus 283 ~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 362 (578)
T PRK05850 283 AGLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRC 362 (578)
T ss_pred cCcchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEec
Confidence 123467899999999999999999998876 335799999999987654432211100000 0 0
Q ss_pred ---CCCCcceeeeccCCcEEEEecCCC----CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcc
Q 002615 146 ---STLKSVPIGLPISNCDIVLVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQT 218 (900)
Q Consensus 146 ---~~~~~~~~G~p~~~~~~~i~d~~~----~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 218 (900)
......++|.|. +.+++++|++. +.++.|||+|+|+.++.||+++|+.+.+.|.....++. .....++
T Consensus 363 ~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~----~~~~~~~ 437 (578)
T PRK05850 363 ETGGGTPLVSYGSPR-SPTVRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPS----PGTPEGP 437 (578)
T ss_pred CCCCCceEEeccCCC-CCEEEEEcCCCCcCCCCCCEEEEEEecCcccccccCChhhhHHHhhccccccc----ccCCCCC
Confidence 011123456664 57899987543 34667999999999999999999999998853221100 0011257
Q ss_pred eEecCceEEEccCCcEEEEcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHH
Q 002615 219 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEI 298 (900)
Q Consensus 219 ~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~ 298 (900)
||+|||+|+++ +|+++|+||+||+||++|++|+|.|||++|.+||.+. ++|++.++. .++.++++++++......+.
T Consensus 438 w~~TGDl~~~~-~G~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~~~-~~v~~v~~~-~~~~~~a~v~~~~~~~~~~~ 514 (578)
T PRK05850 438 WLRTGDLGFIS-EGELFIVGRIKDLLIVDGRNHYPDDIEATIQEITGGR-VAAISVPDD-GTEKLVAIIELKKRGDSDEE 514 (578)
T ss_pred eeeccceeeEE-CCEEEEEcccccEEEECCeecCHHHHHHHHHHhcCCc-EEEEEecCC-CceEEEEEEEeccccCcchh
Confidence 99999999987 8999999999999999999999999999999999854 677777765 55678899988765432211
Q ss_pred ---HHHHHHHHHHhhCCC--CccCCEEEEcC--CcCCCCCCCcchhhhcccccc
Q 002615 299 ---FLSSIKSWVSSKLPL--AMIPNRFVFMD--SLPMTSSGKVDYASLSASTSF 345 (900)
Q Consensus 299 ---~~~~l~~~l~~~l~~--~~~P~~~~~v~--~lP~t~~GKidr~~L~~~~~~ 345 (900)
....+++.+...++. ...|..+++++ +||+|++|||+|++|++.+..
T Consensus 515 ~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~~~iP~t~~GKi~R~~l~~~~~~ 568 (578)
T PRK05850 515 AMDRLRTVKREVTSAISKSHGLSVADLVLVAPGSIPITTSGKIRRAACVEQYRQ 568 (578)
T ss_pred hhhhHHHHHHHHHHHHHHHhCCCceEEEEeCCCCcCCCCCchHHHHHHHHHHHc
Confidence 234556665554442 23566666664 799999999999999886643
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=321.61 Aligned_cols=304 Identities=22% Similarity=0.306 Sum_probs=236.9
Q ss_pred ccCC-CCCCcEEEEccCcchHhHHHH-HHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHh
Q 002615 3 DLYP-LHGEELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQ 80 (900)
Q Consensus 3 ~~~~-~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~ 80 (900)
+.++ ++++|+.++.+|++|.+.... ....+..|++.+.. .++..+++.++..++|++.+||.+++.+-....
T Consensus 225 ~~~~~~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~~~------~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~ 298 (613)
T COG1022 225 EVLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFK------EDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIM 298 (613)
T ss_pred hhCCCCCCCcEEEEeCcHHHHHHHHHHHHHHhhcceEEEec------CCHHHHHHHHHHhCCeEEeechHHHHHHHHHHH
Confidence 4455 889999999999999998865 66667777766665 488999999999999999999999988754322
Q ss_pred hccC----------------------------------------------CCCCCCcCEEEEeccCCChhhHHHHHhhCC
Q 002615 81 SQHN----------------------------------------------MHVPSSLKLLVLSGEVLPLSMWDIISKLFP 114 (900)
Q Consensus 81 ~~~~----------------------------------------------~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~ 114 (900)
+... ...-.++|++++||+++++++...++..
T Consensus 299 ~kv~~~~~~~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-- 376 (613)
T COG1022 299 EKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-- 376 (613)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc--
Confidence 1100 0011489999999999999999988887
Q ss_pred CceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEEEEecCCCCCCCccEEEEccccccccccCCCCC
Q 002615 115 NISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTF 194 (900)
Q Consensus 115 ~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~GEl~v~g~~~~~gY~~~~~~ 194 (900)
++++.++||+|||++.++..+..+ ....++|+|+|+++++|.|+ |||+|+||.||+|||++|+.
T Consensus 377 Gi~i~eGYGlTEts~~~~v~~~~~---------~~~gtvG~p~p~~evKI~d~-------GEilVRG~~Vm~GYyk~pe~ 440 (613)
T COG1022 377 GIPILEGYGLTETSAVVSVNPPDR---------FVLGTVGKPLPGIEVKIADD-------GEILVRGPNVMKGYYKNPEA 440 (613)
T ss_pred CCCeEEEecccccccceEEccccC---------cccCCcCCcCCCceEEEccC-------ceEEEecchhcchhcCChHH
Confidence 799999999999999888765432 25678899999999999974 99999999999999999999
Q ss_pred CccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcccCCcEEE-CceeeChHHHHHHHhCCCCeeEEEEEE
Q 002615 195 MPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKI-NGQRMALEEIEHTLRGHPDVVDTAVVS 273 (900)
Q Consensus 195 ~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~rv~~~~iE~~l~~~~~v~~~~v~~ 273 (900)
|++.|.. ++||+|||+|.++++|+|+++||+++.||. +|++|.|+.||..+.++|-|.+++|++
T Consensus 441 Taeaf~~---------------DGWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg 505 (613)
T COG1022 441 TAEAFTE---------------DGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG 505 (613)
T ss_pred Hhhhccc---------------cCCcccCceeEEcCCCcEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEe
Confidence 9999954 899999999999999999999999999999 999999999999999999999999999
Q ss_pred eecCCceEEEEEEEEecCCCCc-------------hH------HHHHHHHHHH---HhhCCCCccCCEEEEcC-CcC---
Q 002615 274 HKHQGELVILVAFIVLKEKKTS-------------SE------IFLSSIKSWV---SSKLPLAMIPNRFVFMD-SLP--- 327 (900)
Q Consensus 274 ~~~~~~~~~l~~~v~~~~~~~~-------------~~------~~~~~l~~~l---~~~l~~~~~P~~~~~v~-~lP--- 327 (900)
..+. .+.|.|++..+... .+ .+...+...+ ...+..+.....++... ++.
T Consensus 506 ~~k~----~~~AlIvp~~~~l~~~a~~~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~~~~~~~E~i~~~~~~~~~~t~~~ 581 (613)
T COG1022 506 DDKK----FLVALIVPDFDALEKWAESLNKVISASREELARDPKLLKLILPRVNKGNKRLFGFEQIKKFVLLPKEFTPEN 581 (613)
T ss_pred cCCc----ceEEEEeCCHHHHHHHHHhccccccCCHHHHhhCHHHHHHHHHHHHHHhhcccchhhhheeeeccccccccc
Confidence 3333 67888887543211 00 0111111111 11234445555555543 233
Q ss_pred --CCCCCCcchhhhcccccccccc
Q 002615 328 --MTSSGKVDYASLSASTSFTISA 349 (900)
Q Consensus 328 --~t~~GKidr~~L~~~~~~~~~~ 349 (900)
+|+.-|+.|..+.+.+...+..
T Consensus 582 ~~~t~t~klkR~~i~~~~~~~i~~ 605 (613)
T COG1022 582 GELTPTLKLKRHVILDRYKDEIEA 605 (613)
T ss_pred CccccchhhhHHHHHHhhhhHHHH
Confidence 6888899998887777655443
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=302.89 Aligned_cols=316 Identities=22% Similarity=0.401 Sum_probs=259.0
Q ss_pred ccccccccccccccc-----ccceEEeeCCceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEe
Q 002615 532 FIQELWKVHMESCVD-----ASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGC 606 (900)
Q Consensus 532 ~~~~~W~~~~~~~v~-----~sp~v~~~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~ 606 (900)
..+++|+++++.++. ++|++ .++.+|+++.+|.|+++|..||+++|++.++..+..++.+ +++.+|+++
T Consensus 39 ~~~~~W~~~~~~~~~~~~~~~~p~v----~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~ 112 (377)
T TIGR03300 39 KVDQVWSASVGDGVGHYYLRLQPAV----AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGT 112 (377)
T ss_pred cceeeeEEEcCCCcCccccccceEE----ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEc
Confidence 456889999999875 67887 5889999999999999999999999999988876555544 456899999
Q ss_pred eCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCcc-----ccCceeec
Q 002615 607 YKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSI-----FGSPAIDE 681 (900)
Q Consensus 607 ~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~-----~~~~~~~~ 681 (900)
.+|.||+||..+|+++|+....+.+.+.|++.+ +.+++++.++.|+++|.++|+.+|++...... .++|++.+
T Consensus 113 ~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~--~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~ 190 (377)
T TIGR03300 113 EKGEVIALDAEDGKELWRAKLSSEVLSPPLVAN--GLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIAD 190 (377)
T ss_pred CCCEEEEEECCCCcEeeeeccCceeecCCEEEC--CEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEEC
Confidence 999999999999999999998888888888754 68999999999999999999999998775432 35677765
Q ss_pred cCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcce---------eeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEee
Q 002615 682 VHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAF---------ASLCITSANRHVICCLVDGHVVALD-SSGSIIWR 751 (900)
Q Consensus 682 ~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~---------~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~ 751 (900)
+.+|+++.+|.++++|+++ |+.+|+.....+.. ....+...++.+|+++.+|.++++| .+|+++|+
T Consensus 191 --~~v~~~~~~g~v~ald~~t--G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~ 266 (377)
T TIGR03300 191 --GGVLVGFAGGKLVALDLQT--GQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWK 266 (377)
T ss_pred --CEEEEECCCCEEEEEEccC--CCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEe
Confidence 7899999999999999988 99999876532210 0112223578999999999999999 89999998
Q ss_pred ecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEE-ecCCceecccccccccccccccccCCCeEEEEEcC
Q 002615 752 CRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEY-SVGDPITASAYIDEHLQLKLESCLSIDRLVCICTS 830 (900)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 830 (900)
.+... ...| ...++.+|+++.+|.++++|..+|+.+|++ .......++|.+ .++.+++++.
T Consensus 267 ~~~~~--~~~p---~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i-------------~g~~l~~~~~ 328 (377)
T TIGR03300 267 RDASS--YQGP---AVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV-------------VGGYLVVGDF 328 (377)
T ss_pred eccCC--ccCc---eEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE-------------ECCEEEEEeC
Confidence 87432 2333 345789999999999999999999999987 444444444433 2789999999
Q ss_pred CCcEEEEEeecCcccccccccccceeeeeeeccCC-ccccCceeeCCEEEEeeeCCeEEEE
Q 002615 831 SGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQG-DIFSSPVMIGGRVFVGCRDDYIYCI 890 (900)
Q Consensus 831 ~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ss~~~~~~~l~vg~~dg~l~~l 890 (900)
+|.|+++|.++| ++.+++++++ .+.++|++.+++||+++.||.||||
T Consensus 329 ~G~l~~~d~~tG-------------~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 329 EGYLHWLSREDG-------------SFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEECCCC-------------CEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 999999999877 6777888777 5788999999999999999999997
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=328.22 Aligned_cols=323 Identities=16% Similarity=0.224 Sum_probs=243.3
Q ss_pred cCCCCCC-cEEEEccCcchHhHHHH-HHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 4 LYPLHGE-ELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 4 ~~~~~~~-d~~l~~~p~~~~~~~~~-~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
.+++.++ |++++.+|++|+.++.. ++.++..|+++++.++.....+|..+.+.+++++++++..+|.++..+.....+
T Consensus 187 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~ 266 (545)
T PRK07768 187 AAEFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRR 266 (545)
T ss_pred hcCCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhc
Confidence 4567776 89999999999999876 667899999999886555556888999999999999998888888777654422
Q ss_pred cc--CCCCCCCcCEEEEeccCCChhhHHHHHhh---C--CCceEEeecCccccccccceecccCCccc------------
Q 002615 82 QH--NMHVPSSLKLLVLSGEVLPLSMWDIISKL---F--PNISILNLYGSTEVSGDCTYFDCKRLPSI------------ 142 (900)
Q Consensus 82 ~~--~~~~~~~lr~v~~gGe~l~~~~~~~~~~~---~--~~~~l~~~YG~TE~~~~~~~~~~~~~~~~------------ 142 (900)
.. ...++++||.+++||+++++.+.+.+.+. + +...+++.||+||++..++...+......
T Consensus 267 ~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (545)
T PRK07768 267 QAKPGAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALR 346 (545)
T ss_pred cccccCCCchheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccC
Confidence 21 12457899999999999999999988774 3 23469999999999876554332210000
Q ss_pred --c---ccCCCCcceeeeccCCcEEEEecCCCC---CCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCC
Q 002615 143 --L---EMSTLKSVPIGLPISNCDIVLVESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSC 214 (900)
Q Consensus 143 --~---~~~~~~~~~~G~p~~~~~~~i~d~~~~---~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~ 214 (900)
. ........++|+|++++.++++++++. .++.|||+++|+.+++||++.+...+..
T Consensus 347 ~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~---------------- 410 (545)
T PRK07768 347 RAVPATKGNTRRLATLGPPLPGLEVRVVDEDGQVLPPRGVGVIELRGESVTPGYLTMDGFIPAQ---------------- 410 (545)
T ss_pred ceeccCCCCcceEEeccCCCCCCEEEEECCCCCCCCCCCEEEEEEccCcccccccCCCCCcccc----------------
Confidence 0 000123457999999999999986653 4567999999999999999855433221
Q ss_pred CCcceEecCceEEEccCCcEEEEcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEee--cCCceEEEEEEEEecCC
Q 002615 215 GSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHK--HQGELVILVAFIVLKEK 292 (900)
Q Consensus 215 ~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~--~~~~~~~l~~~v~~~~~ 292 (900)
..++||+|||+++++++|.++++||.||+||++|++|+|.|||+.|.+||.|.+++|++.. +...+..++++++....
T Consensus 411 ~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~~v~~~~~ 490 (545)
T PRK07768 411 DADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFAVAVESNAF 490 (545)
T ss_pred cCCCeeeccceEEEecCCEEEEEccccceEEECCEecCHHHHHHHHHhCcccccceEEEEEecCCCCceEEEEEEEeccc
Confidence 1357999999999999999999999999999999999999999999999999997776543 33333445555544332
Q ss_pred CCchHHHHHHHHHHHHhhCCCC--ccCCEEEEcC--CcCCCCCCCcchhhhccccc
Q 002615 293 KTSSEIFLSSIKSWVSSKLPLA--MIPNRFVFMD--SLPMTSSGKVDYASLSASTS 344 (900)
Q Consensus 293 ~~~~~~~~~~l~~~l~~~l~~~--~~P~~~~~v~--~lP~t~~GKidr~~L~~~~~ 344 (900)
. .+....++.+++++.++.+ ..|..+.+++ +||+|++||++|++|++.++
T Consensus 491 ~--~~~~~~~l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~l~~~~~ 544 (545)
T PRK07768 491 E--DPAEVRRIRHQVAHEVVAEVGVRPRNVVVLGPGSIPKTPSGKLRRANAAELVT 544 (545)
T ss_pred c--cHHHHHHHHHHHHHHHHHHhCCCccEEEEeCCCcCCCCCchhHHHHHHHHhcC
Confidence 1 2223345666676665543 5788888886 89999999999999987653
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=300.33 Aligned_cols=316 Identities=20% Similarity=0.357 Sum_probs=255.0
Q ss_pred ccccccccccccccc-----ccceEEeeCCceEEEEecCCCeEEEEECCCCcEEEEEecCCc-----------eeeceeE
Q 002615 532 FIQELWKVHMESCVD-----ASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR-----------IECSAAV 595 (900)
Q Consensus 532 ~~~~~W~~~~~~~v~-----~sp~v~~~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~-----------~~~~~~~ 595 (900)
..+++|+.+++..+. ++|++ .++.||+++.+|.|+++|..||+++|++..... +..++.+
T Consensus 43 ~~~~~W~~~~g~g~~~~~~~~sPvv----~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v 118 (394)
T PRK11138 43 TPTTVWSTSVGDGVGDYYSRLHPAV----AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV 118 (394)
T ss_pred CcceeeEEEcCCCCccceeeeccEE----ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE
Confidence 466789999987763 47887 588999999999999999999999999877541 1112233
Q ss_pred ecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCc---
Q 002615 596 LADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS--- 672 (900)
Q Consensus 596 ~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~--- 672 (900)
+++.||+++.+|.||++|.+||+++|+++.++...++|++.+ +.+++++.++.|+++|.++|+.+|++.....
T Consensus 119 --~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~--~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~ 194 (394)
T PRK11138 119 --AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSD--GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLT 194 (394)
T ss_pred --ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEEC--CEEEEECCCCEEEEEEccCCCEeeeecCCCCccc
Confidence 346899999999999999999999999998888888888874 7899999999999999999999999987533
Q ss_pred --cccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcc-----------eeeeeeeeCCCEEEEEeecCcE
Q 002615 673 --IFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPA-----------FASLCITSANRHVICCLVDGHV 739 (900)
Q Consensus 673 --~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~-----------~~s~~~~~~~~~i~~~~~~g~v 739 (900)
..++|++.. +.+++++.+|.++++|.++ |+.+|+.....+. ..++ ...++.+|+++.+|.+
T Consensus 195 ~~~~~sP~v~~--~~v~~~~~~g~v~a~d~~~--G~~~W~~~~~~~~~~~~~~~~~~~~~sP--~v~~~~vy~~~~~g~l 268 (394)
T PRK11138 195 LRGESAPATAF--GGAIVGGDNGRVSAVLMEQ--GQLIWQQRISQPTGATEIDRLVDVDTTP--VVVGGVVYALAYNGNL 268 (394)
T ss_pred ccCCCCCEEEC--CEEEEEcCCCEEEEEEccC--ChhhheeccccCCCccchhcccccCCCc--EEECCEEEEEEcCCeE
Confidence 236787765 7899999999999999988 9999997654321 1222 2357899999999999
Q ss_pred EEEC-CCCCEEeeecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEEec-CCceeccccccccccccccc
Q 002615 740 VALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSV-GDPITASAYIDEHLQLKLES 817 (900)
Q Consensus 740 ~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~ 817 (900)
+++| .+|+++|+.+.+.. ..+ ...++.||+++.+|.++++|.++|+.+|+.+. .....++|.+
T Consensus 269 ~ald~~tG~~~W~~~~~~~--~~~---~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v---------- 333 (394)
T PRK11138 269 VALDLRSGQIVWKREYGSV--NDF---AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL---------- 333 (394)
T ss_pred EEEECCCCCEEEeecCCCc--cCc---EEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE----------
Confidence 9999 99999999865432 122 33578999999999999999999999998653 2233333333
Q ss_pred ccCCCeEEEEEcCCCcEEEEEeecCcccccccccccceeeeeeeccC-CccccCceeeCCEEEEeeeCCeEEEEEc
Q 002615 818 CLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQ-GDIFSSPVMIGGRVFVGCRDDYIYCIAL 892 (900)
Q Consensus 818 ~~~~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~ss~~~~~~~l~vg~~dg~l~~ld~ 892 (900)
.++.+|+++.+|.|+++|.++| +.+++.++. +.+.++|++.+++||+++++|.||++++
T Consensus 334 ---~~g~l~v~~~~G~l~~ld~~tG-------------~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 334 ---YNGYLVVGDSEGYLHWINREDG-------------RFVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred ---ECCEEEEEeCCCEEEEEECCCC-------------CEEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEEeC
Confidence 2789999999999999999887 667777764 4578899999999999999999999975
|
|
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=320.84 Aligned_cols=415 Identities=26% Similarity=0.346 Sum_probs=293.4
Q ss_pred CccCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 2 QDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 2 ~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
...|+.+..+++-..+..+++..+..+..+++..+..++++....+.++..+.+.+++++++..+.+|++.++++.....
T Consensus 229 ~~~f~~t~s~~~~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~ 308 (1032)
T KOG1178|consen 229 FTTFPPTGSDRFTFKTSVYFDDTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTT 308 (1032)
T ss_pred cccCCcCccchhhhhheeecccchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCc
Confidence 34577888888867777778888888777776666655554555566689999999999999999999998777643322
Q ss_pred -------c----cCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCc
Q 002615 82 -------Q----HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKS 150 (900)
Q Consensus 82 -------~----~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~ 150 (900)
. ......+.||..+++||+++..+...+...+...-...-|++||....+++..+.........+....
T Consensus 309 ~~~~l~~~~~~~dl~~~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~~~~~~s~~ll~~~~v~~ 388 (1032)
T KOG1178|consen 309 SLPLLEHAFSLSDLLTKRSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSYDDFSPSKVLLTNENVYS 388 (1032)
T ss_pred chhhhhhhhhcccccccchhheeeeecCCccchhhhhhhhhcccceeeeecccCCCCccceeHHhhCcccceecceeEEe
Confidence 1 11122358999999999999999887666654444555599999998888766554332222221111
Q ss_pred ceeeeccCC--cEEEEecCCCCCCCccEEEEccccccccccCC-----CCCCccchhccCCcccccCcCCCCCcceEecC
Q 002615 151 VPIGLPISN--CDIVLVESDTVKPDEGEIYAGGLCLSNGYFSE-----STFMPSEYVKLHNNSICNCSVSCGSQTYFRTG 223 (900)
Q Consensus 151 ~~~G~p~~~--~~~~i~d~~~~~~~~GEl~v~g~~~~~gY~~~-----~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TG 223 (900)
+|...-+-+ ..+++.. ..+.+||.++.+.+++.++... ...+++.|... ........+++||||
T Consensus 389 ~p~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~l~~~~~~~~~~~~g~~~~~~~~~~------~~~~d~~~~r~y~tg 459 (1032)
T KOG1178|consen 389 VPKFDSIIGSLTVLESLY---RAGGEGEGGVGKGCLGAEQNLSSWVVDGYSTPENFLPN------FLTVDGVKARIYRTG 459 (1032)
T ss_pred ccchhhccCCCcceeeee---ccCcccCCcccceeecccccccceeeccccchhhcCCc------ccccccchhhccccc
Confidence 111111111 1112221 1223355555555554444221 11222222111 112234467999999
Q ss_pred ceEEEccCCcEEEEcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHH
Q 002615 224 DFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSI 303 (900)
Q Consensus 224 Dl~~~~~~G~l~~~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l 303 (900)
|+|+..++|.+.|.||.|+|||+||+|+++.||+.++..||.|.++.+....+...++.+++|++........ ....|
T Consensus 460 D~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~~~~--~~~~i 537 (1032)
T KOG1178|consen 460 DNGRSLKNGGLEISGRADRQIKDRGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGSKSV--LIRDI 537 (1032)
T ss_pred ccceeecCCCEEEEEeccceEEEccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCCCch--hHHHH
Confidence 9999999999999999999999999999999999999999999999999988887788999999987654432 36789
Q ss_pred HHHHHhhCCCCccCCEEEEcCCcCCCCCCCcchhhhccccccccccccCc----ccccchHHHHHHHHHHhcccCCcccc
Q 002615 304 KSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDA----DETKASDLLQVIRKAFGHALMVEEVL 379 (900)
Q Consensus 304 ~~~l~~~l~~~~~P~~~~~v~~lP~t~~GKidr~~L~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~i~ 379 (900)
+.++.++|+.||+|..+|.++++|+|++||||+++|..........+... .+...+.....++..|-...+...++
T Consensus 538 ~~~l~~~La~y~vPs~~V~l~~vPl~~~GKvDkkaL~~~~s~~~~~~~s~~~~~~~~~~~~~~~~v~d~~l~~~~~~~~s 617 (1032)
T KOG1178|consen 538 RNYLKKELASYMLPSLVVPLAKVPLNPNGKVDKKALLEYNSKLTNVQDSSLSEAKDSILSLPLSTVFDLWLSIGSLAIVS 617 (1032)
T ss_pred HHhhcccccceecceEEEEhhhCCcCCCCCcChhhhhhhhhhhcccccceeeccccccccccccchhhhhhhhcCccccC
Confidence 99999999999999999999999999999999999988443332222211 11223344455666666555534578
Q ss_pred cCCCccccCcchHHHHHHHHHh------CCCchhhhcCCCHHHHHHHHHhhcCC
Q 002615 380 HHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKKGL 427 (900)
Q Consensus 380 ~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~~t~~~l~~~l~~~~~~ 427 (900)
++++||++|||||.|+++...| +.+++.++..+|+..++..+......
T Consensus 618 ~d~~fF~lGgdSi~av~~~~~lr~~~~v~~~~~l~~~l~ti~~~~~~~~~~~~~ 671 (1032)
T KOG1178|consen 618 PDSSFFQLGGDSISAVRLSGLLRKKGYVEGPLGLIFKLLTIVNLESGIIRIKSQ 671 (1032)
T ss_pred CCcchhhhcchhHHHHHHHHhhhhhheeccccccccchhhHHHHHHHHhhhhhh
Confidence 8899999999999999998765 46788899999999998877665433
|
|
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=296.36 Aligned_cols=310 Identities=18% Similarity=0.230 Sum_probs=241.8
Q ss_pred CCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhccC----
Q 002615 9 GEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHN---- 84 (900)
Q Consensus 9 ~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~~---- 84 (900)
..|++++.+|++|.+--......+..|+++.+.. .|+..+.+.|++.++|++.+||-+|+++-+...+...
T Consensus 301 ~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~-----gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgf 375 (691)
T KOG1256|consen 301 GDDVYLSYLPLAHIFERVVELYTFYIGAKIGFAR-----GDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGF 375 (691)
T ss_pred cCceEEEeCcHHHHHHHHHHHhHhhcccEEEEec-----CChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchH
Confidence 4699999999999998877666679999999984 6888899999999999999999999887643322110
Q ss_pred ----------------------CC-----------------CCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCcc
Q 002615 85 ----------------------MH-----------------VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGST 125 (900)
Q Consensus 85 ----------------------~~-----------------~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~T 125 (900)
.. .-..+|.+++|++|+++++...++..+ +++|+++||+|
T Consensus 376 lkr~l~~~A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~-g~~v~eGYGlT 454 (691)
T KOG1256|consen 376 LKRKLFNFAMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAAL-GCRVLEGYGLT 454 (691)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhc-Cceeeeccccc
Confidence 00 013789999999999999999999887 89999999999
Q ss_pred ccccccceecccCCccccccCCCCcceeeeccCCcEEEEecCCC----CCCCccEEEEccccccccccCCCCCCccchhc
Q 002615 126 EVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVK 201 (900)
Q Consensus 126 E~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~----~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~ 201 (900)
||++.++..... +....++|.|+|+++++++|... ..+..|||||+|++|+.||+++|+.|.+.|.
T Consensus 455 Ets~g~~~~~~~---------d~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~GEIcirG~~Vf~GYyK~p~~T~e~id- 524 (691)
T KOG1256|consen 455 ETSAGTTLTLPG---------DNVLGSVGPPVPGNEVKLVDVPEMNYDADGSKGEICVRGPNVFMGYYKDPEKTAEAID- 524 (691)
T ss_pred ccCCceEeccCC---------CCCCCCcCCcccCceEEEechHHhCcCcCCCcceEEEecchhceeccCChHHHhhhhc-
Confidence 999655543221 22567899999999999987543 2345699999999999999999999999984
Q ss_pred cCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcccCCcEEE-CceeeChHHHHHHHhCCCCeeEEEEEEeecCCce
Q 002615 202 LHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKI-NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGEL 280 (900)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~ 280 (900)
.++|++|||+|+++++|.|.+.||+++++|+ .|+.|.|+.||++..+.+.|.+.+|.+....
T Consensus 525 --------------eDGWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~--- 587 (691)
T KOG1256|consen 525 --------------EDGWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLR--- 587 (691)
T ss_pred --------------cccccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcch---
Confidence 4899999999999999999999999999999 9999999999999999999999999876644
Q ss_pred EEEEEEEEecCCCCch---------------------HHHHHHHHHHHH-hhCCCCccCCEEEEc------CCcCCCCCC
Q 002615 281 VILVAFIVLKEKKTSS---------------------EIFLSSIKSWVS-SKLPLAMIPNRFVFM------DSLPMTSSG 332 (900)
Q Consensus 281 ~~l~~~v~~~~~~~~~---------------------~~~~~~l~~~l~-~~l~~~~~P~~~~~v------~~lP~t~~G 332 (900)
..|+|.|+++...... +...+++.+..+ ..|..+..-..+.+. +.=-+||+-
T Consensus 588 ~~LvaiVvpd~e~~~~~a~~~~~~~~~eelc~n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTl 667 (691)
T KOG1256|consen 588 SFLVAIVVPDPEVLKSWAAKDGVKGTFEELCRNLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTL 667 (691)
T ss_pred hcEEEEEecChhhchhhHHHccCchhHHHHhcChhhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccchhh
Confidence 2789999886532110 111223333222 234444444444442 222468899
Q ss_pred Ccchhhhcccccccccccc
Q 002615 333 KVDYASLSASTSFTISAQH 351 (900)
Q Consensus 333 Kidr~~L~~~~~~~~~~~~ 351 (900)
|+.|..|.+.|..++...|
T Consensus 668 K~KR~~l~~~yk~~Id~mY 686 (691)
T KOG1256|consen 668 KIKRPQLLKYYKKQIDELY 686 (691)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 9999999998887765544
|
|
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-32 Score=280.51 Aligned_cols=320 Identities=23% Similarity=0.330 Sum_probs=247.9
Q ss_pred CCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHH----HHHHcCeeEEEecHHHHHHHHHHHh
Q 002615 5 YPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIH----FLQAYSISRLTTVPSLMRVVLPALQ 80 (900)
Q Consensus 5 ~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~----~l~~~~vt~~~~~Ps~l~~l~~~~~ 80 (900)
..+.+.|+++..+|+.|..-+..=+.+++-|+++-..++..+......+.+ .+...++|+|.++|.+++++.+...
T Consensus 274 ~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl 353 (678)
T KOG1180|consen 274 PELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVL 353 (678)
T ss_pred cccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhhhHHHHHHHHHHHH
Confidence 467899999999999999999887889999999998876554433323322 3467899999999999998764322
Q ss_pred hccCC----------------------------------------CCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEe
Q 002615 81 SQHNM----------------------------------------HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILN 120 (900)
Q Consensus 81 ~~~~~----------------------------------------~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~ 120 (900)
+.... ..--.||++++||+||+++..+.+.-.+ .+++..
T Consensus 354 ~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~-C~Pv~q 432 (678)
T KOG1180|consen 354 SKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICF-CCPVLQ 432 (678)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhc-cccccc
Confidence 11000 0112799999999999999988877776 679999
Q ss_pred ecCccccccccceecccCCccccccCCCCcceeeeccCCcEEEEecCCC------CCCCccEEEEccccccccccCCCCC
Q 002615 121 LYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDT------VKPDEGEIYAGGLCLSNGYFSESTF 194 (900)
Q Consensus 121 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~------~~~~~GEl~v~g~~~~~gY~~~~~~ 194 (900)
.||.||++..++..+.. +.....+|.|++-+++.++|-+. ..++.|||+|+|+.+..||+++|+.
T Consensus 433 GYGLTEtca~~tv~e~~---------d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~ek 503 (678)
T KOG1180|consen 433 GYGLTETCAAATVLEPE---------DFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMGYYKNEEK 503 (678)
T ss_pred cccccchhcccEecChh---------hcccccccCCccceEEEEEEhhhcCccCCCCCCCceEEecCCccChhhhCChhh
Confidence 99999999887765433 23556899999999999997432 2236799999999999999999999
Q ss_pred CccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcccCCcEEE-CceeeChHHHHHHHhCCCCeeEEEEEE
Q 002615 195 MPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKI-NGQRMALEEIEHTLRGHPDVVDTAVVS 273 (900)
Q Consensus 195 ~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~rv~~~~iE~~l~~~~~v~~~~v~~ 273 (900)
|.+.|... ++.+||+|||+|++++||.|.++.|++|.||. +|+-|+++-||.+++..|-|...+|.+
T Consensus 504 T~e~ft~~------------~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICvyA 571 (678)
T KOG1180|consen 504 TKEDFTVE------------DGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVDNICVYA 571 (678)
T ss_pred hhhhceec------------CCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchhheEEec
Confidence 99999761 25679999999999999999999999999999 999999999999999999999999988
Q ss_pred eecCCceEEEEEEEEecCCCC----------c------------hHHHHHHHHHHH-HhhCCCCccCCEEEEcCCc--C-
Q 002615 274 HKHQGELVILVAFIVLKEKKT----------S------------SEIFLSSIKSWV-SSKLPLAMIPNRFVFMDSL--P- 327 (900)
Q Consensus 274 ~~~~~~~~~l~~~v~~~~~~~----------~------------~~~~~~~l~~~l-~~~l~~~~~P~~~~~v~~l--P- 327 (900)
..... .++++|++..... . .++...+|.+.- +++|....+|..|++.++- |
T Consensus 572 d~~~s---~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~iEip~~I~l~~e~WTPe 648 (678)
T KOG1180|consen 572 DSNKS---KPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLERIEIPAKIVLSPEPWTPE 648 (678)
T ss_pred ccccc---eeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcccccccccceeEecCCCcCCC
Confidence 76653 6899999874320 0 011122333333 5678899999999887651 2
Q ss_pred ---CCCCCCcchhhhcccccccccc
Q 002615 328 ---MTSSGKVDYASLSASTSFTISA 349 (900)
Q Consensus 328 ---~t~~GKidr~~L~~~~~~~~~~ 349 (900)
.|+.-|+.|+.++..+..+++.
T Consensus 649 nGlvT~A~KLKRk~I~~~~k~ei~~ 673 (678)
T KOG1180|consen 649 NGLVTAALKLKRKEILAAYKKEIDR 673 (678)
T ss_pred ccccHHHHHhhHHHHHHHHHHHHHH
Confidence 3445588888888776655443
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.4e-30 Score=285.90 Aligned_cols=321 Identities=19% Similarity=0.328 Sum_probs=244.0
Q ss_pred cccccccccccc--ccccccceEEeeCCceEEEEecCCCeEEEEECCCCcEEEEEecCCc-ee------eceeEecCCCE
Q 002615 531 GFIQELWKVHME--SCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR-IE------CSAAVLADFSQ 601 (900)
Q Consensus 531 ~~~~~~W~~~~~--~~v~~sp~v~~~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~-~~------~~~~~~~~~~~ 601 (900)
..+++.|+++++ ..+.++|++ .+++||+++.++.|+++|+.||+++|++..... .. .......+++.
T Consensus 37 ~~~~~~W~~~~~~~~~~~~sPvv----~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~ 112 (488)
T cd00216 37 KKLKVAWTFSTGDERGQEGTPLV----VDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRK 112 (488)
T ss_pred hcceeeEEEECCCCCCcccCCEE----ECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCe
Confidence 346788999998 678999998 588999999999999999999999999876543 11 11111112268
Q ss_pred EEEEeeCCEEEEEECCCCcEEEEEecCCc------eeeeeeEeCCCCEEEEecC---------CCeEEEEECCCCeEEEe
Q 002615 602 VVVGCYKGKIYFLDYLTGDIYWTFQTCGE------VKCQPVVDAPRQLIWCGSH---------DHNLYALDFRNYRCVYK 666 (900)
Q Consensus 602 i~vg~~dg~l~~~d~~tG~~~w~~~~~~~------~~~~~~~~~~~~~i~~gs~---------dg~l~~~d~~~g~~~w~ 666 (900)
||+++.+|.|+++|.+||+++|+++.... +.++|++.+ +.+|+++. ++.++++|.++|+.+|+
T Consensus 113 V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~--~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 113 VFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVK--KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred EEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEEC--CEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 99999999999999999999999988765 567788775 77888763 57899999999999999
Q ss_pred eccC---------------------CccccCceeeccCCEEEEEeCCC------------------cEEEEEcCCCCcee
Q 002615 667 LPCG---------------------GSIFGSPAIDEVHDVLYVASTSG------------------RLTAISVKALPFHT 707 (900)
Q Consensus 667 ~~~~---------------------~~~~~~~~~~~~~~~l~v~t~~g------------------~l~~~~~~~~~g~~ 707 (900)
++.. +.++++|+++..++.||+++.++ .++++|.++ |+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t--G~~ 268 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT--GKV 268 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC--CCE
Confidence 8663 23456778876678999999765 799999998 999
Q ss_pred eeEeecCCcc------eeeeeee----eCCC---EEEEEeecCcEEEEC-CCCCEEeeecCCC-ceeccccccccCCCeE
Q 002615 708 LWLHELEVPA------FASLCIT----SANR---HVICCLVDGHVVALD-SSGSIIWRCRTGG-PIFAGPCTSFALPSQV 772 (900)
Q Consensus 708 ~w~~~~~~~~------~~s~~~~----~~~~---~i~~~~~~g~v~~~d-~~G~~~w~~~~~~-~~~~~~~~~~~~~~~l 772 (900)
+|+++...+. ...+.+. .+++ .+++++.+|.++++| .+|+++|+.+... .... ..+.+
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~~-------~~~~v 341 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQPMAY-------DPGLV 341 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeecccccc-------CCceE
Confidence 9998754321 1122222 1222 588899999999999 9999999986541 1111 12567
Q ss_pred EEEe------------------eCCeEEEEeCCCCceeeEEecCCceec----ccccccccccccccccCCCeEEEEEcC
Q 002615 773 LICS------------------RNGSIYSFEQESGNLLWEYSVGDPITA----SAYIDEHLQLKLESCLSIDRLVCICTS 830 (900)
Q Consensus 773 ~~g~------------------~dg~l~~~d~~tG~~~w~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~g~~ 830 (900)
|+++ .+|.|+++|..+|+.+|+.+....... .+. ....+...++.+|+++.
T Consensus 342 yv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~-------~~~~~~~~g~~v~~g~~ 414 (488)
T cd00216 342 YLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPH-------WGGSLATAGNLVFAGAA 414 (488)
T ss_pred EEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcc-------cCcceEecCCeEEEECC
Confidence 7653 468999999999999999887621100 000 00112234789999999
Q ss_pred CCcEEEEEeecCcccccccccccceeeeeeeccCCccccCcee--eCCEEEEeeeCCe
Q 002615 831 SGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDY 886 (900)
Q Consensus 831 ~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~--~~~~l~vg~~dg~ 886 (900)
+|.|+++|.++| +++|++++++.+.++|++ .++++|+++.+|.
T Consensus 415 dG~l~ald~~tG-------------~~lW~~~~~~~~~a~P~~~~~~g~~yv~~~~g~ 459 (488)
T cd00216 415 DGYFRAFDATTG-------------KELWKFRTPSGIQATPMTYEVNGKQYVGVMVGG 459 (488)
T ss_pred CCeEEEEECCCC-------------ceeeEEECCCCceEcCEEEEeCCEEEEEEEecC
Confidence 999999999988 778889999999999984 5999999998874
|
The alignment model contains an 8-bladed beta-propeller. |
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=288.35 Aligned_cols=252 Identities=31% Similarity=0.475 Sum_probs=212.3
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
+.+++.++|+++...|++|.+++..++.++..|+++++++.... ..+..+.+.++++++|.+.++|++++.+.+...
T Consensus 154 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~~~-- 230 (408)
T TIGR01733 154 RRYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEE-RDAALLAALIAEHPVTVLNLTPSLLALLAAALP-- 230 (408)
T ss_pred HhcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhc-cCHHHHHHHHHHcCceEEEeCHHHHHHHHHhhh--
Confidence 35678899999999999999999999999999999999864332 257889999999999999999999999987654
Q ss_pred cCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEE
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 162 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 162 (900)
..+++||.+++||+++++++++.+.+.++++.+++.||+||++.+++........ .... ...++|.|++++.+
T Consensus 231 ---~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~---~~~~-~~~~~G~~~~~~~~ 303 (408)
T TIGR01733 231 ---PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADD---APRE-SPVPIGRPLANTRL 303 (408)
T ss_pred ---hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccc---cCCc-cccccCcccCCceE
Confidence 2368999999999999999999999999779999999999999877643322211 0011 26789999999999
Q ss_pred EEecCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcc
Q 002615 163 VLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 239 (900)
Q Consensus 163 ~i~d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 239 (900)
+|+++++ +.++.|||+++|+.++.||+++++.+.+.|...+... .++.+||+|||+++++++|.+++.||
T Consensus 304 ~i~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~-------~~~~~~~~TGDl~~~d~~g~~~~~gR 376 (408)
T TIGR01733 304 YVLDDDLRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAG-------GDGARLYRTGDLVRYLPDGNLEFLGR 376 (408)
T ss_pred EEECCCCCCCCCCCceEEEecCccccccccCChhhhhcceeeCCCCC-------CCCceEEECCceEEEcCCCCEEEeec
Confidence 9998765 3456799999999999999999999988886533221 11234999999999999999999999
Q ss_pred cCCcEEECceeeChHHHHHHHhCCCCeeEEEE
Q 002615 240 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAV 271 (900)
Q Consensus 240 ~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v 271 (900)
.||+|+++|++|+|.+||++|..++.|.+|+|
T Consensus 377 ~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v 408 (408)
T TIGR01733 377 IDDQVKIRGYRIELGEIEAALLRHPGVREAVV 408 (408)
T ss_pred cCCEEEeCeEEechHHHHHHHhcCcchhhhcC
Confidence 99999999999999999999999999998875
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-30 Score=276.09 Aligned_cols=254 Identities=17% Similarity=0.157 Sum_probs=197.1
Q ss_pred cCCCCC--CcEEEEccCcchHhHH-HHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHh
Q 002615 4 LYPLHG--EELLLFKTSISFIDHL-QEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQ 80 (900)
Q Consensus 4 ~~~~~~--~d~~l~~~p~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~ 80 (900)
.++++. .|++++.+|++|..++ ..++.++..|+++++.+ .+++..+++.++.+ |++.++|++++.+.+..
T Consensus 130 ~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~----~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~- 202 (386)
T TIGR02372 130 ILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLA----AAPASGIMRHARPG--DLIVGTPFIWEQLADLD- 202 (386)
T ss_pred HhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecC----CCChHHHHHhhccC--CEEEECcHHHHHHHhhC-
Confidence 345543 4689999999998776 55888999999999885 46777788777643 89999999999987542
Q ss_pred hccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCc
Q 002615 81 SQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNC 160 (900)
Q Consensus 81 ~~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~ 160 (900)
..++++|. ++||+++++++++.+.+. +..++++.||+||+++++.... +...|+|+++.
T Consensus 203 -----~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~--------------~~~~~~~~p~~ 261 (386)
T TIGR02372 203 -----YRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREA--------------PDDPFRLLPDL 261 (386)
T ss_pred -----cCCCccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccC--------------CCCCcccCCCc
Confidence 22567876 688999999999999875 2347999999999986543210 11235666665
Q ss_pred EEEEecCCCCCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEccc
Q 002615 161 DIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 240 (900)
Q Consensus 161 ~~~i~d~~~~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 240 (900)
++.+- + |.- .| ...|++|||+++++++|+++|+||+
T Consensus 262 ~~~~~--~------~~~--~g----------------------------------~~~~~~tgD~g~~d~~G~l~i~GR~ 297 (386)
T TIGR02372 262 ACFAD--T------LSS--AG----------------------------------LARRLDLQDRLAWDKDGGFTILGRK 297 (386)
T ss_pred cccCC--C------ccC--CC----------------------------------ccceeecCceEEEcCCCcEEEeccc
Confidence 54321 0 100 00 1246899999999999999999999
Q ss_pred CCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCEE
Q 002615 241 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 320 (900)
Q Consensus 241 dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~~ 320 (900)
||+||++|++|+|.+||++|.+||.|.+++|... +..+.++|++++... .+...++|+++++++||.|++|..+
T Consensus 298 dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~~-----g~~~~a~vv~~~~~~-~~~~~~~l~~~~~~~L~~~~~P~~i 371 (386)
T TIGR02372 298 DEILQVGGVNVSPGHVRDILERNPRVRAAAVRLD-----GRRLKAFIVVAEDAD-EAELEIELRATAARHLPAPARPDRF 371 (386)
T ss_pred CCEEEECCEEEcHHHHHHHHHcCCCceEEEEEcC-----CceEEEEEEECCCCC-hHHHHHHHHHHHHHhCCCCCCCcEE
Confidence 9999999999999999999999999999988632 236788888875432 2334568999999999999999999
Q ss_pred EEcCCcCCCCCCCcc
Q 002615 321 VFMDSLPMTSSGKVD 335 (900)
Q Consensus 321 ~~v~~lP~t~~GKid 335 (900)
+++++||+|++||++
T Consensus 372 ~~~~~lP~t~~GKi~ 386 (386)
T TIGR02372 372 RFGTELPRTGAGKLA 386 (386)
T ss_pred EEcccCCCCCCCCcC
Confidence 999999999999985
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-28 Score=263.69 Aligned_cols=285 Identities=22% Similarity=0.361 Sum_probs=230.0
Q ss_pred CCCcEEEEEecCCcee-----eceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecC
Q 002615 575 KRSSVLWEIKLEGRIE-----CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH 649 (900)
Q Consensus 575 ~tG~~~w~~~~~~~~~-----~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~ 649 (900)
.+++++|+++++.... .++.+. ++.+|+++.+|.|++||..+|+++|+++.++.+...|++. ++.+|+++.
T Consensus 38 ~~~~~~W~~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~--~~~v~v~~~ 113 (377)
T TIGR03300 38 VKVDQVWSASVGDGVGHYYLRLQPAVA--GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGAD--GGLVFVGTE 113 (377)
T ss_pred CcceeeeEEEcCCCcCccccccceEEE--CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEc--CCEEEEEcC
Confidence 4688999998876542 344444 4689999999999999999999999999988777777765 488999999
Q ss_pred CCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcce---eeeeeeeC
Q 002615 650 DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAF---ASLCITSA 726 (900)
Q Consensus 650 dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~---~s~~~~~~ 726 (900)
++.++++|.++|+.+|+....+.+.++|++.+ +.+++++.+|.++++|.++ |+.+|+.....+.. ....+...
T Consensus 114 ~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~--~~v~v~~~~g~l~a~d~~t--G~~~W~~~~~~~~~~~~~~~sp~~~ 189 (377)
T TIGR03300 114 KGEVIALDAEDGKELWRAKLSSEVLSPPLVAN--GLVVVRTNDGRLTALDAAT--GERLWTYSRVTPALTLRGSASPVIA 189 (377)
T ss_pred CCEEEEEECCCCcEeeeeccCceeecCCEEEC--CEEEEECCCCeEEEEEcCC--CceeeEEccCCCceeecCCCCCEEE
Confidence 99999999999999999999888888888865 8999999999999999988 99999987765432 11122234
Q ss_pred CCEEEEEeecCcEEEEC-CCCCEEeeecCCCc-----------eeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeE
Q 002615 727 NRHVICCLVDGHVVALD-SSGSIIWRCRTGGP-----------IFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWE 794 (900)
Q Consensus 727 ~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~-----------~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~ 794 (900)
++.+++++.+|.++++| .+|+.+|+.....+ +.+.| ...++.+|+++.+|.++++|.++|+++|+
T Consensus 190 ~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p---~~~~~~vy~~~~~g~l~a~d~~tG~~~W~ 266 (377)
T TIGR03300 190 DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDP---VVDGGQVYAVSYQGRVAALDLRSGRVLWK 266 (377)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCcc---EEECCEEEEEEcCCEEEEEECCCCcEEEe
Confidence 57899998899999999 89999998764322 11223 33467999999999999999999999998
Q ss_pred EecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecCcccccccccccceeeeeee-ccCCccccCcee
Q 002615 795 YSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKL-ELQGDIFSSPVM 873 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~ss~~~ 873 (900)
.+... ...+ ...++.+|+++.+|.|+++|..+| +..|.. .+.+...++|++
T Consensus 267 ~~~~~--~~~p-------------~~~~~~vyv~~~~G~l~~~d~~tG-------------~~~W~~~~~~~~~~ssp~i 318 (377)
T TIGR03300 267 RDASS--YQGP-------------AVDDNRLYVTDADGVVVALDRRSG-------------SELWKNDELKYRQLTAPAV 318 (377)
T ss_pred eccCC--ccCc-------------eEeCCEEEEECCCCeEEEEECCCC-------------cEEEccccccCCccccCEE
Confidence 86432 1222 223789999999999999999877 445554 566677889999
Q ss_pred eCCEEEEeeeCCeEEEEEccccccc
Q 002615 874 IGGRVFVGCRDDYIYCIALETQHLE 898 (900)
Q Consensus 874 ~~~~l~vg~~dg~l~~ld~~tg~~~ 898 (900)
.+++||+++.+|.||++|..+|++.
T Consensus 319 ~g~~l~~~~~~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 319 VGGYLVVGDFEGYLHWLSREDGSFV 343 (377)
T ss_pred ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 9999999999999999999999875
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=261.31 Aligned_cols=283 Identities=19% Similarity=0.345 Sum_probs=224.3
Q ss_pred CCCcEEEEEecCCcee-----eceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCC-----------ceeeeeeEe
Q 002615 575 KRSSVLWEIKLEGRIE-----CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG-----------EVKCQPVVD 638 (900)
Q Consensus 575 ~tG~~~w~~~~~~~~~-----~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~-----------~~~~~~~~~ 638 (900)
..++++|+..++..+. .++++. ++.||+++.+|.|+++|.+||+++|+++... .+...|++.
T Consensus 42 ~~~~~~W~~~~g~g~~~~~~~~sPvv~--~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~ 119 (394)
T PRK11138 42 FTPTTVWSTSVGDGVGDYYSRLHPAVA--YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA 119 (394)
T ss_pred CCcceeeEEEcCCCCccceeeeccEEE--CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEE
Confidence 4577888888765432 245554 4589999999999999999999999987754 112334444
Q ss_pred CCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcce
Q 002615 639 APRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAF 718 (900)
Q Consensus 639 ~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~ 718 (900)
++.||+++.++.++++|.++|+.+|+.+..+...++|++.+ +.+|+++.+|.++++|.++ |+.+|++....+..
T Consensus 120 --~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~--~~v~v~~~~g~l~ald~~t--G~~~W~~~~~~~~~ 193 (394)
T PRK11138 120 --GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSD--GLVLVHTSNGMLQALNESD--GAVKWTVNLDVPSL 193 (394)
T ss_pred --CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEEC--CEEEEECCCCEEEEEEccC--CCEeeeecCCCCcc
Confidence 47899999999999999999999999999888889998876 8999999999999999998 99999998754322
Q ss_pred -----eeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCCc-----------eeccccccccCCCeEEEEeeCCeE
Q 002615 719 -----ASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP-----------IFAGPCTSFALPSQVLICSRNGSI 781 (900)
Q Consensus 719 -----~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~-----------~~~~~~~~~~~~~~l~~g~~dg~l 781 (900)
.++. ..++.+++++.+|.++++| .+|+.+|+.+...+ +.+.| ...++.+|+++.+|.+
T Consensus 194 ~~~~~~sP~--v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP---~v~~~~vy~~~~~g~l 268 (394)
T PRK11138 194 TLRGESAPA--TAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTP---VVVGGVVYALAYNGNL 268 (394)
T ss_pred cccCCCCCE--EECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCc---EEECCEEEEEEcCCeE
Confidence 2333 3467899999999999999 99999999764332 12334 3347899999999999
Q ss_pred EEEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecCcccccccccccceeeeeee
Q 002615 782 YSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKL 861 (900)
Q Consensus 782 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 861 (900)
+++|.++|+.+|+.+..... .+ ...++.+|+++.+|.++++|.++| +..|+.
T Consensus 269 ~ald~~tG~~~W~~~~~~~~--~~-------------~~~~~~vy~~~~~g~l~ald~~tG-------------~~~W~~ 320 (394)
T PRK11138 269 VALDLRSGQIVWKREYGSVN--DF-------------AVDGGRIYLVDQNDRVYALDTRGG-------------VELWSQ 320 (394)
T ss_pred EEEECCCCCEEEeecCCCcc--Cc-------------EEECCEEEEEcCCCeEEEEECCCC-------------cEEEcc
Confidence 99999999999997654321 11 122789999999999999999877 334433
Q ss_pred -ccCCccccCceeeCCEEEEeeeCCeEEEEEccccccc
Q 002615 862 -ELQGDIFSSPVMIGGRVFVGCRDDYIYCIALETQHLE 898 (900)
Q Consensus 862 -~l~~~~~ss~~~~~~~l~vg~~dg~l~~ld~~tg~~~ 898 (900)
.+.+...++|++.+++||+++.+|.||++|..+|++.
T Consensus 321 ~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 321 SDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFV 358 (394)
T ss_pred cccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEE
Confidence 3445667899999999999999999999999999875
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.5e-29 Score=277.74 Aligned_cols=214 Identities=28% Similarity=0.467 Sum_probs=178.3
Q ss_pred cEEEEccCcchHhHH-HHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc--cCCCC
Q 002615 11 ELLLFKTSISFIDHL-QEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ--HNMHV 87 (900)
Q Consensus 11 d~~l~~~p~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~--~~~~~ 87 (900)
|++++.+|++|.+++ ..++.++..|+++++++.... .++..+++.++++++|++.++|++++.+++..+.. .....
T Consensus 197 d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~ 275 (417)
T PF00501_consen 197 DRILSFLPLSHIFGLISALLAALFSGATLVLPSPFDL-FDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKD 275 (417)
T ss_dssp TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEESSHHH-HHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTT
T ss_pred ceEEeeccccccccccccccccccccccccccccccc-cccccchhcccccccccccccccccccccccccccccccccc
Confidence 699999999999999 789999999999999975443 45788999999999999999999999998843222 11234
Q ss_pred CCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEEEEecC
Q 002615 88 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVES 167 (900)
Q Consensus 88 ~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~ 167 (900)
+++||.+++||+++++++.+++++.++.+++++.||+||++..++..... .......++|+|+++++++|+|+
T Consensus 276 l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~-------~~~~~~~~~G~~~~~~~~~ivd~ 348 (417)
T PF00501_consen 276 LSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPE-------DDIEKPGSVGKPLPGVEVKIVDP 348 (417)
T ss_dssp GTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETT-------THHSSTTSEBEESTTEEEEEECT
T ss_pred cccccccccccccCChhhccccccccccccceecccccccceeeeccccc-------ccccccccccccccccccccccc
Confidence 77899999999999999999999999667999999999999887644200 11114567899999999999987
Q ss_pred C-C---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcccCCc
Q 002615 168 D-T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 243 (900)
Q Consensus 168 ~-~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ 243 (900)
+ + +.++.|||+|+|+.++.||+++|+.+.+.|.. ++||+|||+|++++||.++++||.||+
T Consensus 349 ~~~~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~---------------~~~~~TGD~g~~d~~G~~~~~GR~~~~ 413 (417)
T PF00501_consen 349 NTGEPLPPGEPGEIVIRGPNVFSGYYNDPELTAEAFID---------------DGWYRTGDLGRLDEDGYLYILGRSDDM 413 (417)
T ss_dssp TTSSBESTTSEEEEEEESTTSBSEETTBHHHHHHHEET---------------TSEEEEEEEEEEETTSEEEEEEEGSCE
T ss_pred cccccccccccccccccCCccceeeecccccccccccc---------------ccceecceEEEECCCCeEEEEEeeCCE
Confidence 6 3 35677999999999999999998888888742 469999999999999999999999999
Q ss_pred EEEC
Q 002615 244 IKIN 247 (900)
Q Consensus 244 ik~~ 247 (900)
||++
T Consensus 414 i~~~ 417 (417)
T PF00501_consen 414 IKVR 417 (417)
T ss_dssp EEET
T ss_pred EEeC
Confidence 9985
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=264.15 Aligned_cols=287 Identities=18% Similarity=0.229 Sum_probs=206.2
Q ss_pred cCCCCCCcEEEEccCcchHhH-HHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 4 LYPLHGEELLLFKTSISFIDH-LQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 4 ~~~~~~~d~~l~~~p~~~~~~-~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
.++++++|+++...++.+..+ +...+.++..|++++..+ ..++..+++.|+++++|++.++|+++..|++.....
T Consensus 113 ~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~ 188 (422)
T TIGR02155 113 AAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS----GGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRM 188 (422)
T ss_pred HcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC----CCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHc
Confidence 368899999998777654333 334566788899998775 346788999999999999999999999998765543
Q ss_pred cCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeecc--CCc
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPI--SNC 160 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~--~~~ 160 (900)
.......+||.+++|||++++++.+.+.+.| ++++++.||+||+++......|... ..|.++ ++.
T Consensus 189 ~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~-g~~v~~~YG~tE~~~~~~~~~~~~~------------~~g~~~~~~~~ 255 (422)
T TIGR02155 189 GIDPAQTSLQVGIFGAEPWTNAMRKEIEARL-GMKATDIYGLSEVIGPGVAMECVET------------QDGLHIWEDHF 255 (422)
T ss_pred CCCcccCceEEEEEeCCcCCHHHHHHHHHHh-CCceEecccchhhcCCceeeccccc------------CCCceEecCee
Confidence 2212235899999999999999999999988 7899999999998532222222110 012222 356
Q ss_pred EEEEecCC-C---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccC-C---
Q 002615 161 DIVLVESD-T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS-G--- 232 (900)
Q Consensus 161 ~~~i~d~~-~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~-G--- 232 (900)
.++|+|++ + ++++.|||++++. +...| ...||+|||+++++++ |
T Consensus 256 ~~eivd~~~g~~v~~Ge~Gelvvt~~------------~~~~~----------------p~~ry~TGDl~~~~~~~Gr~~ 307 (422)
T TIGR02155 256 YPEIIDPHTGEVLPDGEEGELVFTTL------------TKEAL----------------PVIRYRTRDLTRLLPGTARTM 307 (422)
T ss_pred EEEEECCCCCCCCCCCCeeEEEEecC------------Ccccc----------------ceeeEEcCcEEEEECCCCCcc
Confidence 67888853 3 3466799999863 12222 2468999999999876 4
Q ss_pred --cEEEEcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCC------CchHHHHHHHH
Q 002615 233 --DLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKK------TSSEIFLSSIK 304 (900)
Q Consensus 233 --~l~~~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~------~~~~~~~~~l~ 304 (900)
.+++.||.||+||++|.+|+|.+||.+|.+||.|.....+.....+....+.+.++..... ...+.+.++|+
T Consensus 308 ~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~ 387 (422)
T TIGR02155 308 RRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKPESYTLRLHEQASLLAGEIQ 387 (422)
T ss_pred cccccccCccCCeEEECCEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEecCcccccchHHHHHHHHHHH
Confidence 4689999999999999999999999999999999844444444433334566666655332 11223356788
Q ss_pred HHHHhhCCCCccCCEEEEcCCcCCCCCCCcchh
Q 002615 305 SWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYA 337 (900)
Q Consensus 305 ~~l~~~l~~~~~P~~~~~v~~lP~t~~GKidr~ 337 (900)
+.+++.+..+.. -.++.+++||+|+ ||+.|.
T Consensus 388 ~~~~~~~~~~~~-v~~~~~~~lp~~~-GK~~~~ 418 (422)
T TIGR02155 388 HTIKQEVGVSMD-VHLVEPGSLPRSE-GKARRV 418 (422)
T ss_pred HHHHhccCcEEE-EEEECCCCccCCC-CCceEE
Confidence 888888876632 2333457999988 999874
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=232.25 Aligned_cols=308 Identities=19% Similarity=0.234 Sum_probs=240.5
Q ss_pred ccCCCCCCcEEEEccCcchHhHH-HHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHL-QEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
..|+++++|+++..+|++|.++. ..+-.+|..|+|+|+-. +++.+.+|+...+|++|+++-.--+.+.|+..+..
T Consensus 276 ~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~Vlrk----KFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~ 351 (649)
T KOG1179|consen 276 YVFGMTADDVVYTTLPLYHSAAGILGIGGCLLHGATVVLRK----KFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPS 351 (649)
T ss_pred HHhCCCccceEEEcchhHHHHHHHHHHHHHHhcCceEEEec----ccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCC
Confidence 36899999999999999998765 66999999999999997 89999999999999999999999999999987655
Q ss_pred ccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeee------
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGL------ 155 (900)
Q Consensus 82 ~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~------ 155 (900)
.... -..+|..+ |.-+.+++|+.|.++|.-.+|.+.||+||.....+.+.. ..+.+|+
T Consensus 352 ~~er--~HkVRla~--GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~d~------------~vGA~G~~~~~~~ 415 (649)
T KOG1179|consen 352 PEER--QHKVRLAY--GNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNYDG------------RVGACGFMSRLLK 415 (649)
T ss_pred hhhc--CceEEEEe--cCCCCchHHHHHHHHcCCCeEEEEeccccCcceeeeecC------------ccccccchhhhhh
Confidence 4332 35666665 788999999999999977789999999998765443321 1111221
Q ss_pred ccCCcEEEEe---------cCCC-----CCCCccEEEEc----cc-cccccccCCCCCCccchhccCCcccccCcCCCCC
Q 002615 156 PISNCDIVLV---------ESDT-----VKPDEGEIYAG----GL-CLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGS 216 (900)
Q Consensus 156 p~~~~~~~i~---------d~~~-----~~~~~GEl~v~----g~-~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 216 (900)
-+.-+++.-+ |+++ +++++|.|+-+ .| .-+.||.+.++.+..+...+... .+
T Consensus 416 ~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFk---------kG 486 (649)
T KOG1179|consen 416 LLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFK---------KG 486 (649)
T ss_pred hccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhc---------cC
Confidence 1112222222 2233 45677755321 22 22789999888888887664433 47
Q ss_pred cceEecCceEEEccCCcEEEEcccCCcEEECceeeChHHHHHHHhCCCCeeEEEEEEeecCC-ceEEEEEEEEecCCCCc
Q 002615 217 QTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQG-ELVILVAFIVLKEKKTS 295 (900)
Q Consensus 217 ~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~-~~~~l~~~v~~~~~~~~ 295 (900)
+-||.|||+-.+|+.|+|||..|..|...-.|++|+..|||.+|.....++++.|.+..-++ ++..=.|.|+.++..
T Consensus 487 D~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~~-- 564 (649)
T KOG1179|consen 487 DVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVLDPTT-- 564 (649)
T ss_pred cEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHHhhhccccceeEEEEecCCccCccceEEEEecCcc--
Confidence 89999999999999999999999999999999999999999999999999999998865543 222333445544432
Q ss_pred hHHHHHHHHHHHHhhCCCCccCCEEEEcCCcCCCCCCCcchhhhccc
Q 002615 296 SEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSAS 342 (900)
Q Consensus 296 ~~~~~~~l~~~l~~~l~~~~~P~~~~~v~~lP~t~~GKidr~~L~~~ 342 (900)
+.+.+.+-+++++.||+|.+|..+.+.+++++|.+=|..+..|.+.
T Consensus 565 -~~d~~~l~~~l~~~LP~YA~P~FlRl~~~i~~TgTFKl~K~~L~~e 610 (649)
T KOG1179|consen 565 -EKDLEKLYQHLRENLPSYARPRFLRLQDEIEKTGTFKLQKTELQKE 610 (649)
T ss_pred -cchHHHHHHHHHhhCccccchHHHHHHhhhhcccchhhHHHHHHHc
Confidence 3446788999999999999999999999999999999999999764
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.8e-26 Score=268.25 Aligned_cols=239 Identities=32% Similarity=0.536 Sum_probs=204.8
Q ss_pred ccCCCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhc
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~ 82 (900)
+.|+++.+|+++...++.||.++.++|.++..|+++++.+ .....++..+.+.+.++++|++..+|+++..++......
T Consensus 400 ~~~~~~~~d~~l~~~s~~fD~~~~~~f~~l~~G~~l~~~~-~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~ 478 (642)
T COG1020 400 ARFGLDADDRVLALASLSFDASVFEIFGALLEGARLVLAP-ALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAP 478 (642)
T ss_pred HhcCCCcccEEeecCCcccchhHHHHHHHHhCCCEEEecC-ccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhc
Confidence 4588999999999999999999999999999999999995 555789999999999999999999999999988752222
Q ss_pred cCCCCCCCcCEEEEeccCCChhhHHHHHhhCC-CceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcE
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFP-NISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161 (900)
Q Consensus 83 ~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 161 (900)
........+|.+++|||+++..+...+....+ ...+.|.||+||++..++.+...... . ..+++|+|+++..
T Consensus 479 ~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~------~-~~~piG~p~~n~~ 551 (642)
T COG1020 479 DLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAEL------E-SRVPIGRPVANTQ 551 (642)
T ss_pred cccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEccccc------C-CCCCcceeeCCCe
Confidence 22122345999999999999999998887654 57899999999988877766544321 1 1679999999999
Q ss_pred EEEecCCC---CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEc
Q 002615 162 IVLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 238 (900)
Q Consensus 162 ~~i~d~~~---~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 238 (900)
++|+|... +.+..||++++|.++++||+++|+.|+++|+.. ++|+|||++++.+||.+.++|
T Consensus 552 ~~ild~~~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~---------------~~y~tgD~~r~~~dg~~e~lg 616 (642)
T COG1020 552 LYILDQGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIAL---------------RLYRTGDLARPLADGALEYLG 616 (642)
T ss_pred EEEECCCCCcCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhc---------------cCccCCCeeeECCCCeEEEec
Confidence 99998444 345669999999999999999999999999761 489999999999999999999
Q ss_pred ccCCcEEECceeeChHHHHHHHhCCC
Q 002615 239 RKDRTIKINGQRMALEEIEHTLRGHP 264 (900)
Q Consensus 239 R~dd~ik~~G~rv~~~~iE~~l~~~~ 264 (900)
|.|+|||++|+||++.|||..+.++|
T Consensus 617 r~D~qvki~g~Riel~eie~~l~~~~ 642 (642)
T COG1020 617 RKDSQVKIRGFRIELGEIEAALAEQP 642 (642)
T ss_pred cccceeEeceEecCcHHHHHHHhcCC
Confidence 99999999999999999999998875
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-24 Score=241.84 Aligned_cols=292 Identities=21% Similarity=0.293 Sum_probs=212.9
Q ss_pred EECCCCcEEEEEecC--CceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCc-e------eeeeeEeCCCC
Q 002615 572 ADAKRSSVLWEIKLE--GRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE-V------KCQPVVDAPRQ 642 (900)
Q Consensus 572 ~d~~tG~~~w~~~~~--~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~-~------~~~~~~~~~~~ 642 (900)
-+..++++.|++..+ ..+..++.+.. +.+|+++.++.|+++|.+||+++|+++.... . ...++...+++
T Consensus 34 ~n~~~~~~~W~~~~~~~~~~~~sPvv~~--g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~ 111 (488)
T cd00216 34 ANVKKLKVAWTFSTGDERGQEGTPLVVD--GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPR 111 (488)
T ss_pred hhhhcceeeEEEECCCCCCcccCCEEEC--CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCC
Confidence 344568889998887 45666676653 4799999999999999999999999887543 1 11111121237
Q ss_pred EEEEecCCCeEEEEECCCCeEEEeeccCCc------cccCceeeccCCEEEEEeC---------CCcEEEEEcCCCCcee
Q 002615 643 LIWCGSHDHNLYALDFRNYRCVYKLPCGGS------IFGSPAIDEVHDVLYVAST---------SGRLTAISVKALPFHT 707 (900)
Q Consensus 643 ~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~------~~~~~~~~~~~~~l~v~t~---------~g~l~~~~~~~~~g~~ 707 (900)
.||+++.++.|+++|.++|+.+|++..... +.++|.+.+ +.+|+++. +|.++++|.++ |+.
T Consensus 112 ~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~--~~v~vg~~~~~~~~~~~~g~v~alD~~T--G~~ 187 (488)
T cd00216 112 KVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVK--KLVIIGSSGAEFFACGVRGALRAYDVET--GKL 187 (488)
T ss_pred eEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEEC--CEEEEeccccccccCCCCcEEEEEECCC--Cce
Confidence 899999999999999999999999988765 578888876 88999864 57899999998 999
Q ss_pred eeEeecCCc---------------------ceeeeeeeeCCCEEEEEeecC------------------cEEEEC-CCCC
Q 002615 708 LWLHELEVP---------------------AFASLCITSANRHVICCLVDG------------------HVVALD-SSGS 747 (900)
Q Consensus 708 ~w~~~~~~~---------------------~~~s~~~~~~~~~i~~~~~~g------------------~v~~~d-~~G~ 747 (900)
+|+++...+ ...++.+...++.+|+++.++ .++++| .+|+
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 999876421 112334444578999998665 799999 9999
Q ss_pred EEeeecCCCc------eecccccccc--CCC----eEEEEeeCCeEEEEeCCCCceeeEEecCC-ceecccccccccccc
Q 002615 748 IIWRCRTGGP------IFAGPCTSFA--LPS----QVLICSRNGSIYSFEQESGNLLWEYSVGD-PITASAYIDEHLQLK 814 (900)
Q Consensus 748 ~~w~~~~~~~------~~~~~~~~~~--~~~----~l~~g~~dg~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~~~~~~ 814 (900)
++|++....+ ..+.|.+... .++ .+++++.+|.++++|.++|+++|+++... .....
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~~~---------- 337 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQPMAYD---------- 337 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeeccccccC----------
Confidence 9999875422 1122222111 122 48899999999999999999999987541 11111
Q ss_pred cccccCCCeEEEEE------------------cCCCcEEEEEeecCcccccccccccceeeeeeeccC---------Ccc
Q 002615 815 LESCLSIDRLVCIC------------------TSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQ---------GDI 867 (900)
Q Consensus 815 ~~~~~~~~~~l~~g------------------~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~---------~~~ 867 (900)
.+.+|++ ..+|.|+++|..+| +.+|+.... +..
T Consensus 338 -------~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG-------------~~~W~~~~~~~~~~~~~g~~~ 397 (488)
T cd00216 338 -------PGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG-------------KVVWEKREGTIRDSWNIGFPH 397 (488)
T ss_pred -------CceEEEccccccccCcccccCCCCCCCceEEEEEeCCCC-------------cEeeEeeCCccccccccCCcc
Confidence 2344443 35689999999987 455555544 233
Q ss_pred cc-CceeeCCEEEEeeeCCeEEEEEcccccccc
Q 002615 868 FS-SPVMIGGRVFVGCRDDYIYCIALETQHLEE 899 (900)
Q Consensus 868 ~s-s~~~~~~~l~vg~~dg~l~~ld~~tg~~~~ 899 (900)
.. ++++.++.||+|+.+|.||++|.+||++..
T Consensus 398 ~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW 430 (488)
T cd00216 398 WGGSLATAGNLVFAGAADGYFRAFDATTGKELW 430 (488)
T ss_pred cCcceEecCCeEEEECCCCeEEEEECCCCceee
Confidence 33 456788999999999999999999998753
|
The alignment model contains an 8-bladed beta-propeller. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=235.53 Aligned_cols=319 Identities=18% Similarity=0.302 Sum_probs=227.8
Q ss_pred cccccccccccccc--ccccceEEeeCCceEEEEecCCCeEEEEECCCCcEEEEEecCCc--eee---c----eeEecCC
Q 002615 531 GFIQELWKVHMESC--VDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR--IEC---S----AAVLADF 599 (900)
Q Consensus 531 ~~~~~~W~~~~~~~--v~~sp~v~~~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~--~~~---~----~~~~~~~ 599 (900)
..+++.|+++++.. +.++|++ .++.||+++.++.|+++|+.||+++|++..... ... + -.+.-.+
T Consensus 45 ~~L~~~W~~~~g~~~g~~stPvv----~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~ 120 (527)
T TIGR03075 45 KKLQPAWTFSLGKLRGQESQPLV----VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYD 120 (527)
T ss_pred ccceEEEEEECCCCCCcccCCEE----ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEEC
Confidence 45778899999754 6789998 488999999999999999999999999876431 110 0 0011234
Q ss_pred CEEEEEeeCCEEEEEECCCCcEEEEEecCC-----ceeeeeeEeCCCCEEEEecC------CCeEEEEECCCCeEEEeec
Q 002615 600 SQVVVGCYKGKIYFLDYLTGDIYWTFQTCG-----EVKCQPVVDAPRQLIWCGSH------DHNLYALDFRNYRCVYKLP 668 (900)
Q Consensus 600 ~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~-----~~~~~~~~~~~~~~i~~gs~------dg~l~~~d~~~g~~~w~~~ 668 (900)
+.||+++.++.|+++|.+||+++|++.... .+.++|++.+ +.|++++. +|.|+++|.++|+.+|++.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~--g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVK--GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEEC--CEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 589999999999999999999999987642 2456677764 67888753 6899999999999999865
Q ss_pred c--------------------------------CCccccCceeeccCCEEEEEeCC-----C-----------cEEEEEc
Q 002615 669 C--------------------------------GGSIFGSPAIDEVHDVLYVASTS-----G-----------RLTAISV 700 (900)
Q Consensus 669 ~--------------------------------~~~~~~~~~~~~~~~~l~v~t~~-----g-----------~l~~~~~ 700 (900)
. ++.++..+.++++.+.||+++.+ + .|.++|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 4 12456677888888999999833 2 6889999
Q ss_pred CCCCceeeeEeecCCcce------eeeeee---eCCC---EEEEEeecCcEEEEC-CCCCEEeee----------cCC--
Q 002615 701 KALPFHTLWLHELEVPAF------ASLCIT---SANR---HVICCLVDGHVVALD-SSGSIIWRC----------RTG-- 755 (900)
Q Consensus 701 ~~~~g~~~w~~~~~~~~~------~s~~~~---~~~~---~i~~~~~~g~v~~~d-~~G~~~w~~----------~~~-- 755 (900)
++ |+..|.++...... ..+.+. .+++ .+..++.+|.++++| .+|+.+|.. ...
T Consensus 279 ~T--G~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~ 356 (527)
T TIGR03075 279 DT--GKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLK 356 (527)
T ss_pred cc--CCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCC
Confidence 98 99999987643211 222222 1333 466788999999999 899987321 100
Q ss_pred --Ccee----------------cccc---------cccc-CCCeEEEEee------------------------------
Q 002615 756 --GPIF----------------AGPC---------TSFA-LPSQVLICSR------------------------------ 777 (900)
Q Consensus 756 --~~~~----------------~~~~---------~~~~-~~~~l~~g~~------------------------------ 777 (900)
.++. ..|. ...+ ..+.+|+.+.
T Consensus 357 ~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~ 436 (527)
T TIGR03075 357 TGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPP 436 (527)
T ss_pred CCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCC
Confidence 0000 0000 0000 1223333322
Q ss_pred ---CCeEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecCcccccccccccc
Q 002615 778 ---NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHM 854 (900)
Q Consensus 778 ---dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~ 854 (900)
.|.|.++|+.+|+++|+++...+....+... .++++++++.+|.++++|.++|
T Consensus 437 ~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t------------~g~lvf~g~~~G~l~a~D~~TG------------ 492 (527)
T TIGR03075 437 DDHMGSLIAWDPITGKIVWEHKEDFPLWGGVLAT------------AGDLVFYGTLEGYFKAFDAKTG------------ 492 (527)
T ss_pred CCCceeEEEEeCCCCceeeEecCCCCCCCcceEE------------CCcEEEEECCCCeEEEEECCCC------------
Confidence 3579999999999999988765544443332 2778999999999999999998
Q ss_pred eeeeeeeccCCccccCcee--eCCEEEEee
Q 002615 855 VQEFAKLELQGDIFSSPVM--IGGRVFVGC 882 (900)
Q Consensus 855 ~~~~~~~~l~~~~~ss~~~--~~~~l~vg~ 882 (900)
+.+|++++++.+..+|+. .++++|+..
T Consensus 493 -e~lw~~~~g~~~~a~P~ty~~~G~qYv~~ 521 (527)
T TIGR03075 493 -EELWKFKTGSGIVGPPVTYEQDGKQYVAV 521 (527)
T ss_pred -CEeEEEeCCCCceecCEEEEeCCEEEEEE
Confidence 778888999989999987 567776653
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.5e-23 Score=189.86 Aligned_cols=286 Identities=18% Similarity=0.296 Sum_probs=233.6
Q ss_pred cccccccccccccccceEEeeCCceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEE
Q 002615 534 QELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYF 613 (900)
Q Consensus 534 ~~~W~~~~~~~v~~sp~v~~~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~ 613 (900)
.+.|+..++..+.++|.++ ++.|.+|..+|.+|.++.+||+..|.+...+.+.+.+....+++.||.|+.|+++|+
T Consensus 44 ~~~We~ilg~RiE~sa~vv----gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~ya 119 (354)
T KOG4649|consen 44 NLIWEAILGVRIECSAIVV----GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYA 119 (354)
T ss_pred cEEeehhhCceeeeeeEEE----CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEE
Confidence 4679999999999999985 778999999999999999999999999998888889999999999999999999999
Q ss_pred EECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCC--eEEEeeccCCccccCceeeccCCEEEEEeC
Q 002615 614 LDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY--RCVYKLPCGGSIFGSPAIDEVHDVLYVAST 691 (900)
Q Consensus 614 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g--~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~ 691 (900)
+|..+-..+|+.+.++.+..+|++++..+.+|+++..|.+.+.+++++ ..+|.+...++++++|..-. ..+.+++-
T Consensus 120 lD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~--~sv~i~~V 197 (354)
T KOG4649|consen 120 LDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVG--SSVIITTV 197 (354)
T ss_pred ecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceecc--ceEEEEEe
Confidence 999999999999999999999999988899999999999999999988 89999999999999988765 78899999
Q ss_pred CCcEEEEEcCCCCceeeeEeecCCcceeeeeee-eCCCEEEEEeecCcEEEECCCCCEEeeecCCC--ceeccccccc--
Q 002615 692 SGRLTAISVKALPFHTLWLHELEVPAFASLCIT-SANRHVICCLVDGHVVALDSSGSIIWRCRTGG--PIFAGPCTSF-- 766 (900)
Q Consensus 692 ~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~-~~~~~i~~~~~~g~v~~~d~~G~~~w~~~~~~--~~~~~~~~~~-- 766 (900)
+|.+.+++.. |+++|++..+.+++..++.. +....++.+..+-..+.....|.++|..+.+- .++..|-..+
T Consensus 198 dG~l~~f~~s---G~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~l~F~~ 274 (354)
T KOG4649|consen 198 DGVLTSFDES---GRQVWRPATKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPKLRFDL 274 (354)
T ss_pred ccEEEEEcCC---CcEEEeecCCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcccceec
Confidence 9999999833 99999999999999888765 45567777765544444555688999877542 1222221111
Q ss_pred -----cCCCeEEEEeeCCeEEEE---------eCCCCceee--EEecCCceecccccccccccccccccCCCeEEEEEcC
Q 002615 767 -----ALPSQVLICSRNGSIYSF---------EQESGNLLW--EYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTS 830 (900)
Q Consensus 767 -----~~~~~l~~g~~dg~l~~~---------d~~tG~~~w--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 830 (900)
..+..+-..+.||.+..+ +...|++.- .+++.+.+.++|.+- ++.+++|+.
T Consensus 275 h~~~~S~~~ll~~~s~dgkv~il~~~~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii-------------~grl~igcR 341 (354)
T KOG4649|consen 275 HSPGISYPKLLRRSSGDGKVMILMTSKSLAEISSNGGELQNLEAIELSNEIFSSPVII-------------DGRLLIGCR 341 (354)
T ss_pred cCCCCcchhhhhhhcCCCcEEEEEecccccccccCCCccceEEEeecCcccccCCeEE-------------ccEEEEEEc
Confidence 112234455677777777 767777754 346677777766543 678999999
Q ss_pred CCcEEEEEeec
Q 002615 831 SGSIHILRVNL 841 (900)
Q Consensus 831 ~G~v~~~d~~~ 841 (900)
|..|++||..+
T Consensus 342 DdYv~cldl~~ 352 (354)
T KOG4649|consen 342 DDYVRCLDLDT 352 (354)
T ss_pred cCeEEEEeccc
Confidence 99999999874
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-20 Score=214.91 Aligned_cols=214 Identities=19% Similarity=0.289 Sum_probs=160.5
Q ss_pred ccccccccccccc----------cccccceEEeeCCceEEEEecCCCeEEEEECCCCcEEEEEecCCceeec--------
Q 002615 531 GFIQELWKVHMES----------CVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECS-------- 592 (900)
Q Consensus 531 ~~~~~~W~~~~~~----------~v~~sp~v~~~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~-------- 592 (900)
..+++.|+++++. ...++|++ .++.||+++.++.|+++|+.||+++|++.........
T Consensus 162 ~~L~~aWt~~tGd~~~~~~~~~~~~e~TPlv----vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRG 237 (764)
T TIGR03074 162 GNLKVAWTYHTGDLKTPDDPGEATFQATPLK----VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRG 237 (764)
T ss_pred cCceEEEEEECCCccccccccccccccCCEE----ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccc
Confidence 4688899999873 34678998 4899999999999999999999999998765432110
Q ss_pred ee----------------EecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCce----------------eeeeeEeCC
Q 002615 593 AA----------------VLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV----------------KCQPVVDAP 640 (900)
Q Consensus 593 ~~----------------~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~----------------~~~~~~~~~ 640 (900)
.. ...++++||+++.|+.|+++|.+||+.+|.|..++.+ .+.|++.+
T Consensus 238 vay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~- 316 (764)
T TIGR03074 238 VSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAG- 316 (764)
T ss_pred eEEecCCcccccccccccccccCCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEEC-
Confidence 00 1124568999999999999999999999998654432 35566664
Q ss_pred CCEEEEecC----------CCeEEEEECCCCeEEEeeccC------------------CccccCceeeccCCEEEEEeC-
Q 002615 641 RQLIWCGSH----------DHNLYALDFRNYRCVYKLPCG------------------GSIFGSPAIDEVHDVLYVAST- 691 (900)
Q Consensus 641 ~~~i~~gs~----------dg~l~~~d~~~g~~~w~~~~~------------------~~~~~~~~~~~~~~~l~v~t~- 691 (900)
+.|++|+. +|.|++||.+||+.+|+++.. ++.+....++.+.+.+|+++.
T Consensus 317 -g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn 395 (764)
T TIGR03074 317 -TTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGN 395 (764)
T ss_pred -CEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCC
Confidence 67888853 588999999999999998642 233456677777788888652
Q ss_pred -----------------CCcEEEEEcCCCCceeeeEeecCCc-c-----eeeeeee---eCCC----EEEEEeecCcEEE
Q 002615 692 -----------------SGRLTAISVKALPFHTLWLHELEVP-A-----FASLCIT---SANR----HVICCLVDGHVVA 741 (900)
Q Consensus 692 -----------------~g~l~~~~~~~~~g~~~w~~~~~~~-~-----~~s~~~~---~~~~----~i~~~~~~g~v~~ 741 (900)
.+.|.++|+++ |+.+|+++.... . -..+.+. ..++ .++.++.+|.+++
T Consensus 396 ~~pd~~g~~r~~~~n~y~~slvALD~~T--Gk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~v 473 (764)
T TIGR03074 396 QTPDQWGGDRTPADEKYSSSLVALDATT--GKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYV 473 (764)
T ss_pred ccccccCCccccCcccccceEEEEeCCC--CceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEE
Confidence 35688999998 999999876321 1 1122221 1144 7899999999999
Q ss_pred EC-CCCCEEeee
Q 002615 742 LD-SSGSIIWRC 752 (900)
Q Consensus 742 ~d-~~G~~~w~~ 752 (900)
+| .+|+.+|..
T Consensus 474 lDr~tG~~l~~~ 485 (764)
T TIGR03074 474 LDRRTGEPIVPV 485 (764)
T ss_pred EECCCCCEEeec
Confidence 99 899999964
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-20 Score=206.13 Aligned_cols=218 Identities=16% Similarity=0.212 Sum_probs=157.2
Q ss_pred CCCCCCcEEEEccCcchHhHHHH-HHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhcc
Q 002615 5 YPLHGEELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQH 83 (900)
Q Consensus 5 ~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~ 83 (900)
.+++++|+++.+.|+.++.+... .+.++..|++++... .....++.|+++++|++.++|+.+..+++.+....
T Consensus 125 ~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~------~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g 198 (445)
T TIGR03335 125 QGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEG------KCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEG 198 (445)
T ss_pred cCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCC------chhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcC
Confidence 48999999999999998877655 455677888876442 12346788999999999999999888877655443
Q ss_pred CCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEEE
Q 002615 84 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 163 (900)
Q Consensus 84 ~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 163 (900)
......+||.+++|||++++++.+.+.+.| ++++++.||+||++. +. .|... .....+.+.+.++
T Consensus 199 ~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~-g~~v~~~YG~TE~~~-~~--~c~~~-----------~g~h~~~d~~~vE 263 (445)
T TIGR03335 199 IDPAESSIRRLVVGGESFADESRNYVEELW-GCEVYNTYGSTEGTM-CG--ECQAV-----------AGLHVPEDLVHLD 263 (445)
T ss_pred CCcccCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEecCChhhhhh-eE--EecCC-----------CCccccCCceEEE
Confidence 212246899999999999999999998888 799999999999862 21 22110 0112233457889
Q ss_pred EecCCC----CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEcc-C----C--
Q 002615 164 LVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQ-S----G-- 232 (900)
Q Consensus 164 i~d~~~----~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~-~----G-- 232 (900)
|+|+++ ++++.|||++.... +........++ -|+|||++++.. + |
T Consensus 264 IvDp~~~~~vp~Ge~GELvvT~L~------~~~~r~~~Pli------------------RYrtgD~~~~~~~~~C~CGr~ 319 (445)
T TIGR03335 264 VYDPRHQRFLPDGECGRIVLTTLL------KPGERCGSLLI------------------NYDTEDTTVVISRDRCPCGRT 319 (445)
T ss_pred EEcCCCCCCCcCCCceEEEEEecC------CCCccCCceEE------------------EeecCceEEEecCCCCCCCCC
Confidence 998765 34677999997642 10000111122 299999999632 2 3
Q ss_pred --cEEEEcccCCcEEECceeeChHHHHHHHhCC---CCee
Q 002615 233 --DLVFLGRKDRTIKINGQRMALEEIEHTLRGH---PDVV 267 (900)
Q Consensus 233 --~l~~~GR~dd~ik~~G~rv~~~~iE~~l~~~---~~v~ 267 (900)
++..+||.||+++++|.+|+|.+||++|.++ +++.
T Consensus 320 ~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~~~~ 359 (445)
T TIGR03335 320 HMRILNPEREAETIWISGVPFNRVDVERAVFQRENMDSLT 359 (445)
T ss_pred cceeCCCcccCceEEECCEEeCHHHHHHHHhccCCCCCCC
Confidence 2445799999999999999999999999995 5554
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.3e-20 Score=187.46 Aligned_cols=222 Identities=26% Similarity=0.455 Sum_probs=167.8
Q ss_pred CCeEEEEECCCCcEEEEEecCCceeece-eEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEE
Q 002615 566 SHKFICADAKRSSVLWEIKLEGRIECSA-AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI 644 (900)
Q Consensus 566 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~-~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i 644 (900)
+|.|.++|+.+|+.+|+..+........ ....+++.+|+++.++.|++||+.||+++|++...+.+...+.... +.+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~--~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDG--GRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEET--TEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecc--ccc
Confidence 5789999999999999998743222112 1333557899999999999999999999999998777666665553 788
Q ss_pred EEecCCCeEEEEECCCCeEEEee-ccCC---ccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCccee-
Q 002615 645 WCGSHDHNLYALDFRNYRCVYKL-PCGG---SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFA- 719 (900)
Q Consensus 645 ~~gs~dg~l~~~d~~~g~~~w~~-~~~~---~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~- 719 (900)
|+++.++.++++|.++|+.+|+. .... .....+...-.++.+++++.+|.++++|+++ |+.+|++....+...
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t--G~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKT--GKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTT--TEEEEEEESSTT-SS-
T ss_pred ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCC--CcEEEEeecCCCCCCc
Confidence 99888889999999999999995 3321 1222222222258899999999999999998 999999987553311
Q ss_pred --------eeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCc
Q 002615 720 --------SLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGN 790 (900)
Q Consensus 720 --------s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~ 790 (900)
...+...++.+|+++.++.++++| .+|+.+|+.. .......+ ...++.+|+++.++.|+++|.+||+
T Consensus 158 ~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~~~---~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 158 PISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYSLP---SVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp -EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEEC-SS-ECECE---ECCCTEEEEEETTTEEEEEETTTTE
T ss_pred ceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEec-CCCccCCc---eeeCCEEEEEeCCCEEEEEECCCCC
Confidence 123333456999999899888889 8999889766 33333323 4567899999999999999999999
Q ss_pred eeeEE
Q 002615 791 LLWEY 795 (900)
Q Consensus 791 ~~w~~ 795 (900)
.+|++
T Consensus 234 ~~W~~ 238 (238)
T PF13360_consen 234 VVWQQ 238 (238)
T ss_dssp EEEEE
T ss_pred EEeEC
Confidence 99974
|
... |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.1e-19 Score=198.17 Aligned_cols=307 Identities=17% Similarity=0.196 Sum_probs=203.5
Q ss_pred EECCCCcEEEEEecCCc--eeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCc--ee---e------eeeEe
Q 002615 572 ADAKRSSVLWEIKLEGR--IECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE--VK---C------QPVVD 638 (900)
Q Consensus 572 ~d~~tG~~~w~~~~~~~--~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~--~~---~------~~~~~ 638 (900)
-|..+.++.|++..+.. +.+++++. ++.||+++.++.|+++|.+||+++|++..... .. + .+.+.
T Consensus 42 ~nv~~L~~~W~~~~g~~~g~~stPvv~--~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~ 119 (527)
T TIGR03075 42 ENVKKLQPAWTFSLGKLRGQESQPLVV--DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY 119 (527)
T ss_pred hhhccceEEEEEECCCCCCcccCCEEE--CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE
Confidence 34556778898887642 45667765 35899999999999999999999999876432 11 1 12232
Q ss_pred CCCCEEEEecCCCeEEEEECCCCeEEEeeccCC-----ccccCceeeccCCEEEEEeC------CCcEEEEEcCCCCcee
Q 002615 639 APRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG-----SIFGSPAIDEVHDVLYVAST------SGRLTAISVKALPFHT 707 (900)
Q Consensus 639 ~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~-----~~~~~~~~~~~~~~l~v~t~------~g~l~~~~~~~~~g~~ 707 (900)
++.||+++.++.|+++|.++|+.+|++.... .+.++|++.+ +.||+++. +|.|+++|.++ |+.
T Consensus 120 --~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~--g~Vivg~~~~~~~~~G~v~AlD~~T--G~~ 193 (527)
T TIGR03075 120 --DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVK--GKVITGISGGEFGVRGYVTAYDAKT--GKL 193 (527)
T ss_pred --CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEEC--CEEEEeecccccCCCcEEEEEECCC--Cce
Confidence 4689999999999999999999999987632 3567888876 88999874 68899999998 999
Q ss_pred eeEeecCCcc--------------------------------eeeeeeeeCCCEEEEEeec-----C-----------cE
Q 002615 708 LWLHELEVPA--------------------------------FASLCITSANRHVICCLVD-----G-----------HV 739 (900)
Q Consensus 708 ~w~~~~~~~~--------------------------------~~s~~~~~~~~~i~~~~~~-----g-----------~v 739 (900)
+|++....+. -..+.+....+.+|+++.+ + .|
T Consensus 194 lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~ 273 (527)
T TIGR03075 194 VWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSI 273 (527)
T ss_pred eEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeE
Confidence 9997653211 1223455557889998732 2 68
Q ss_pred EEEC-CCCCEEeeecCCCc------eecccccccc-CCC----eEEEEeeCCeEEEEeCCCCceeeEEecCC--c----e
Q 002615 740 VALD-SSGSIIWRCRTGGP------IFAGPCTSFA-LPS----QVLICSRNGSIYSFEQESGNLLWEYSVGD--P----I 801 (900)
Q Consensus 740 ~~~d-~~G~~~w~~~~~~~------~~~~~~~~~~-~~~----~l~~g~~dg~l~~~d~~tG~~~w~~~~~~--~----~ 801 (900)
.++| .+|++.|.++.-.. ....+.+... .++ .+..++.+|.+|++|..||+++|..+... . +
T Consensus 274 vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~ 353 (527)
T TIGR03075 274 VARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGV 353 (527)
T ss_pred EEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccccc
Confidence 9999 99999999874221 1122222211 233 36678999999999999999974211100 0 0
Q ss_pred e---cccccc---------------------cccccccccccCCCeEEEEEcC---------------------------
Q 002615 802 T---ASAYID---------------------EHLQLKLESCLSIDRLVCICTS--------------------------- 830 (900)
Q Consensus 802 ~---~~~~~~---------------------~~~~~~~~~~~~~~~~l~~g~~--------------------------- 830 (900)
. ..+... ...+....+.-+..+++|+.+.
T Consensus 354 ~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 433 (527)
T TIGR03075 354 DLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIK 433 (527)
T ss_pred CCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccC
Confidence 0 000000 0000000111112334444332
Q ss_pred ------CCcEEEEEeecCcccccccccccceeeeeeeccCCccccCcee-eCCEEEEeeeCCeEEEEEcccccccc
Q 002615 831 ------SGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM-IGGRVFVGCRDDYIYCIALETQHLEE 899 (900)
Q Consensus 831 ------~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~-~~~~l~vg~~dg~l~~ld~~tg~~~~ 899 (900)
.|.|..+|..+| +..|+.........+++. .++.+|+++.+|.++|||.+||+...
T Consensus 434 p~~~~~~g~l~AiD~~tG-------------k~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw 496 (527)
T TIGR03075 434 PPPDDHMGSLIAWDPITG-------------KIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELW 496 (527)
T ss_pred CCCCCCceeEEEEeCCCC-------------ceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeE
Confidence 245777777766 666766666666667655 56788888889999999999998643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.2e-19 Score=183.93 Aligned_cols=284 Identities=18% Similarity=0.195 Sum_probs=198.7
Q ss_pred CCCCCCcEEEEccCcch-HhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhcc
Q 002615 5 YPLHGEELLLFKTSISF-IDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQH 83 (900)
Q Consensus 5 ~~~~~~d~~l~~~p~~~-~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~ 83 (900)
.+...+|++..+..+.. ..++....++--.|++++-.. ..+.+.-+++|+.+++|++.++|+.+..+++.+.+..
T Consensus 129 ~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~----~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G 204 (438)
T COG1541 129 AGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPIS----GGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEG 204 (438)
T ss_pred ccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccC----CccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcC
Confidence 46788999887777553 344444555556677776554 3577889999999999999999999999999888775
Q ss_pred CCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEEE
Q 002615 84 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 163 (900)
Q Consensus 84 ~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 163 (900)
....-.+||.+++|+|++++++.+.+.+.| ++..++.||.||..+.. ...|.... ..-...++..++
T Consensus 205 ~~~~~~~lk~~i~gaE~~see~R~~ie~~~-g~~~~diYGltE~~g~g-~~eC~~~~-----------glhi~eD~~~~E 271 (438)
T COG1541 205 IDPDKLSLKKGIFGAEPWSEEMRKVIENRF-GCKAFDIYGLTEGFGPG-AGECTERN-----------GLHIWEDHFIFE 271 (438)
T ss_pred CChhhcceeEEEEecccCCHHHHHHHHHHh-CCceeeccccccccCCc-cccccccc-----------CCCcchhhceee
Confidence 434457999999999999999999999999 89999999999986653 33333211 112234567788
Q ss_pred EecCCC----CCCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccC----Cc--
Q 002615 164 LVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS----GD-- 233 (900)
Q Consensus 164 i~d~~~----~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~----G~-- 233 (900)
|+|++. +.++.|||+++.-. + ....+ --|+|||+++..++ |+
T Consensus 272 i~dP~t~e~l~dge~GelV~T~L~-------~---~~~Pl------------------IRYrtgDit~i~~~~C~cGr~~ 323 (438)
T COG1541 272 IVDPETGEQLPDGERGELVITTLT-------K---EGMPL------------------IRYRTGDITVILSDPCGCGRTH 323 (438)
T ss_pred eecCCcCccCCCCCeeEEEEEecc-------c---cCcce------------------EEEEcCCeeEecccCCCCCCcc
Confidence 898765 34556999887532 1 11222 23999999998763 43
Q ss_pred ---EEEEcccCCcEEECceeeChHHHHHHHhCCCCee-EEEEEEeecCCceEEEEEEEEecCCCCchHHHH---HHHHHH
Q 002615 234 ---LVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVV-DTAVVSHKHQGELVILVAFIVLKEKKTSSEIFL---SSIKSW 306 (900)
Q Consensus 234 ---l~~~GR~dd~ik~~G~rv~~~~iE~~l~~~~~v~-~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~---~~l~~~ 306 (900)
-.+.||.||+++++|.+|+|..||.+|.+.+.+. +-.++... .+....+.+-|+.+++........ .++...
T Consensus 324 ~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~-~~~~d~L~V~vE~~~~~~~~~~~~~~~~~l~~~ 402 (438)
T COG1541 324 RRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTR-NGGLDELTVRVELENEAEELEDERRLAKKLIKN 402 (438)
T ss_pred ccccccCcccccEEEECCEEeCHHHHHHHHhcccCCCceEEEEEec-CCCCceEEEEEEecCcccchHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999998 55555544 333445677777765422222111 244444
Q ss_pred HHhhCCCCccCCEEEEcCCcCCCCCCCcch
Q 002615 307 VSSKLPLAMIPNRFVFMDSLPMTSSGKVDY 336 (900)
Q Consensus 307 l~~~l~~~~~P~~~~~v~~lP~t~~GKidr 336 (900)
+...+.. .+--.++.+.++|+|.. |..|
T Consensus 403 ~~~~~~~-~~~v~~v~~g~l~r~~~-K~kr 430 (438)
T COG1541 403 IKSELGV-RVEVELVEPGELPRTEG-KAKR 430 (438)
T ss_pred HHhhcCC-ceEEEEEeccceecccC-ceeE
Confidence 4444332 12234555678999876 5443
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-19 Score=217.89 Aligned_cols=283 Identities=13% Similarity=0.093 Sum_probs=203.7
Q ss_pred CCCCCcEEEEccCcchHhHHHHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhccC-
Q 002615 6 PLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHN- 84 (900)
Q Consensus 6 ~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~~- 84 (900)
.+.++|+++..+|++|.++....+.+++.|+++... ++..+++.|+++++|++.++|.+++.+.........
T Consensus 641 ~~~~~D~~Ls~LPLaHI~er~~~~~~l~~G~~I~~~-------d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~ 713 (1452)
T PTZ00297 641 SSFKKHLMVHFTPFAMLFNRVFVLGLFAHGSAVATV-------DAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANER 713 (1452)
T ss_pred CCCCCCEEEEechHHHHHHHHHHHHHHHcCCEEEeC-------CHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhh
Confidence 456789999999999999976778889999998643 567899999999999999999999987643321100
Q ss_pred -----------------------CC----------------CCCCcCEEEEecc--CCChhhHHHHHhhCCCceEEeecC
Q 002615 85 -----------------------MH----------------VPSSLKLLVLSGE--VLPLSMWDIISKLFPNISILNLYG 123 (900)
Q Consensus 85 -----------------------~~----------------~~~~lr~v~~gGe--~l~~~~~~~~~~~~~~~~l~~~YG 123 (900)
.. .-..+|.+++||. +++..+.. +++++..||
T Consensus 714 ~~~~~~~lf~~A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~-------~i~i~~g~g 786 (1452)
T PTZ00297 714 YSAVYSWLFERAFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE-------HISVCYVPC 786 (1452)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC-------CceEEEecc
Confidence 00 0146999999873 55543322 577889999
Q ss_pred ccccccccceecccCCccccccCCCCcceeeeccCCcEEEEecCCC--CCCCccEEEEccccccccccCCCCCCccchhc
Q 002615 124 STEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDT--VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVK 201 (900)
Q Consensus 124 ~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~--~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~ 201 (900)
+||+. +..... .....|.|+|+++++|.+.+. ..+..|||+++ |.++|+.|.+.+
T Consensus 787 lTE~~---~~~~~~-----------~~~~~G~PlpgvEvKI~~~~E~~~~~~~GEIlvr-------~~kdpe~T~e~~-- 843 (1452)
T PTZ00297 787 LREVF---FLPSEG-----------VFCVDGTPAPSLQVDLEPFDEPSDGAGIGQLVLA-------KKGEPRRTLPIA-- 843 (1452)
T ss_pred eEEee---eecCCC-----------CcccCCeecCceEEEEcccccccCCCCCCeEEEE-------ECCChHHHHHhh--
Confidence 99953 221111 111239999999999986422 23346999995 457888776521
Q ss_pred cCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcccCCcEEE-CceeeChHHHHHHHhCCCCeeEEEEEEeecCCce
Q 002615 202 LHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKI-NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGEL 280 (900)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~ 280 (900)
++| ++||.|.|+||++|+||. +|++|.|+.||..+..+|.|.+++|++....
T Consensus 844 ---------------~gW---------~~dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k--- 896 (1452)
T PTZ00297 844 ---------------AQW---------KRDRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSR--- 896 (1452)
T ss_pred ---------------CcC---------ccCCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCC---
Confidence 234 479999999999999999 9999999999999999999999999987654
Q ss_pred EEEEEEEEecCCCCc--------------------hHHHHH----HHHHHH---H--hhCCCCccCCEEEEcC-Cc----
Q 002615 281 VILVAFIVLKEKKTS--------------------SEIFLS----SIKSWV---S--SKLPLAMIPNRFVFMD-SL---- 326 (900)
Q Consensus 281 ~~l~~~v~~~~~~~~--------------------~~~~~~----~l~~~l---~--~~l~~~~~P~~~~~v~-~l---- 326 (900)
.++|+|+++..... .+.+.+ .+++.+ . ..+..+.+++.|.+++ +|
T Consensus 897 -~lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~~~~el~~~~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~en 975 (1452)
T PTZ00297 897 -PIIAIVSPNRDTVEFEWRQSHCMGEGGGPARQLGWTELVAYASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHS 975 (1452)
T ss_pred -ceEEEEEeCHHHHHHHHHHHcCCCccccccccCCHHHHHHhHHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCC
Confidence 37888887632110 111111 222222 1 2267788888877754 45
Q ss_pred -CCCCCCCcchhhhccccccccccccCc
Q 002615 327 -PMTSSGKVDYASLSASTSFTISAQHDA 353 (900)
Q Consensus 327 -P~t~~GKidr~~L~~~~~~~~~~~~~~ 353 (900)
-+||+.|+.|+.+.+.|+..++..|..
T Consensus 976 GlLTPTlKlKR~~I~~kY~~~Ie~LY~~ 1003 (1452)
T PTZ00297 976 TFLTPYGKIRRDAVHSYFSSVIERFYSD 1003 (1452)
T ss_pred CcCChhhhhhHHHHHHHHHHHHHHHhcc
Confidence 489999999999999998887776653
|
|
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.5e-20 Score=192.11 Aligned_cols=119 Identities=21% Similarity=0.243 Sum_probs=107.4
Q ss_pred CcceEecCceEEE-ccCCcEEEEcccCCcEEECc---eeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecC
Q 002615 216 SQTYFRTGDFARR-IQSGDLVFLGRKDRTIKING---QRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKE 291 (900)
Q Consensus 216 ~~~~~~TGDl~~~-~~~G~l~~~GR~dd~ik~~G---~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~ 291 (900)
.++||+|||+|++ |++|+++|.||.| +| ++|+|. ||++|.+||+|.+|+|++.+++..++.++|||++..
T Consensus 207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~~ 280 (365)
T PRK09188 207 SRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAEL 280 (365)
T ss_pred cCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECC
Confidence 5789999999998 6999999999998 88 799999 999999999999999999999988899999998763
Q ss_pred CCCchHHHHHHHHHHHHhhCCCCccCCEEEEcCCcCCCCCCCcchhhhccccccc
Q 002615 292 KKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFT 346 (900)
Q Consensus 292 ~~~~~~~~~~~l~~~l~~~l~~~~~P~~~~~v~~lP~t~~GKidr~~L~~~~~~~ 346 (900)
. ...++|+++++++||. ++|..++++++||+|++|||+|++|+.+....
T Consensus 281 ~-----~~~~el~~~l~~~L~~-kvP~~v~~v~~lP~t~~GKi~R~~Lr~~~~~~ 329 (365)
T PRK09188 281 P-----ADEKSLRARLAGAKPP-KPPEHIQPVAALPRDADGTVRDDILRLIAMNQ 329 (365)
T ss_pred C-----CCHHHHHHHHHhhchh-cCCcEEEEECCCCCCCCCCccHHHHHHHhhcc
Confidence 2 1236899999999999 99999999999999999999999998875433
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-17 Score=180.99 Aligned_cols=312 Identities=22% Similarity=0.338 Sum_probs=211.0
Q ss_pred EEEEecCC-CeEEEEECCCCcEEEEEecCC---ceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCC--cee
Q 002615 559 YLFVGSHS-HKFICADAKRSSVLWEIKLEG---RIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG--EVK 632 (900)
Q Consensus 559 ~v~igs~~-g~l~~~d~~tG~~~w~~~~~~---~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~--~~~ 632 (900)
..+..... ......+..+|+.+|...... .....+.....++.+|+++.+|.|+++|+++|+.+|+..... ...
T Consensus 24 ~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~ 103 (370)
T COG1520 24 TDYLVAVGADLVAVANNTSGTLLWSVSLGSGGGGIYAGPAPADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQL 103 (370)
T ss_pred ceEEeeccCCceEEEcccCcceeeeeecccCccceEeccccEeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceec
Confidence 44544322 335556667799999865332 334444223344689999999999999999999999887764 455
Q ss_pred eeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCC-ccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEe
Q 002615 633 CQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG-SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLH 711 (900)
Q Consensus 633 ~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~-~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~ 711 (900)
..+++.. ++.||+++.++.+||+|..+|+.+|++...+ ..+..+.+.. ++.+|+.+.+|.++++|.++ |+.+|.+
T Consensus 104 ~~~~~~~-~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~-~~~v~~~s~~g~~~al~~~t--G~~~W~~ 179 (370)
T COG1520 104 SGPILGS-DGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVG-DGTVYVGTDDGHLYALNADT--GTLKWTY 179 (370)
T ss_pred cCceEEe-CCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEc-CcEEEEecCCCeEEEEEccC--CcEEEEE
Confidence 5555554 6889999999999999999999999999988 3333343333 48899998889999999988 9999998
Q ss_pred ecCCc--ceeeeeeeeCCCEEEEEee--cCcEEEEC-CCCCEEeeecCCCceec-----ccc---ccccCCCeEEEEeeC
Q 002615 712 ELEVP--AFASLCITSANRHVICCLV--DGHVVALD-SSGSIIWRCRTGGPIFA-----GPC---TSFALPSQVLICSRN 778 (900)
Q Consensus 712 ~~~~~--~~~s~~~~~~~~~i~~~~~--~g~v~~~d-~~G~~~w~~~~~~~~~~-----~~~---~~~~~~~~l~~g~~d 778 (900)
+...+ ......+....+.+|+++. ++.++++| .+|...|+.+....+-. .+. -....++.++.++.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~ 259 (370)
T COG1520 180 ETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYG 259 (370)
T ss_pred ecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecC
Confidence 77542 1111112256788999987 67899999 89999999542221111 111 123345677888999
Q ss_pred CeEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCC------CcEEEEEeecCcccccccccc
Q 002615 779 GSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSS------GSIHILRVNLDVTGKENQSKD 852 (900)
Q Consensus 779 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~------G~v~~~d~~~~~~~~~~~~~~ 852 (900)
|.++|+|..+|+.+|+++.+..+...+.... .....++.+++.... +.+++++...+.
T Consensus 260 g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~-------~~~~~dG~v~~~~~~~~~~~~~~~~~~~~~~g~--------- 323 (370)
T COG1520 260 GKLLCLDADTGELIWSFPAGGSVQGSGLYTT-------PVAGADGKVYIGFTDNDGRGSGSLYALADVPGG--------- 323 (370)
T ss_pred CeEEEEEcCCCceEEEEecccEeccCCeeEE-------eecCCCccEEEEEeccccccccceEEEeccCCC---------
Confidence 9999999999999999988622222211110 001124555555432 335666653331
Q ss_pred cceeeeeeeccCC-ccccCceeeCCEEEEeeeCCe-EEEEEc
Q 002615 853 HMVQEFAKLELQG-DIFSSPVMIGGRVFVGCRDDY-IYCIAL 892 (900)
Q Consensus 853 ~~~~~~~~~~l~~-~~~ss~~~~~~~l~vg~~dg~-l~~ld~ 892 (900)
....|.+...+ .....++..++.+|.+..++. ||++..
T Consensus 324 --~~~~w~~~~~g~~~~~~~~~~~g~~y~~~~~~~~ly~~~~ 363 (370)
T COG1520 324 --TLLKWSYPVGGGYSLSTVAGSDGTLYFGGDDGRGLYAFRD 363 (370)
T ss_pred --eeEEEEEeCCCceecccceeccCeEEecccCCceEEEEcc
Confidence 11256666655 444567778999999999997 998854
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-17 Score=182.37 Aligned_cols=285 Identities=25% Similarity=0.422 Sum_probs=205.8
Q ss_pred ccccccccccccc---ccccce-EEeeCCceEEEEecCCCeEEEEECCCCcEEEEEecCC--ceeeceeEecCCCEEEEE
Q 002615 532 FIQELWKVHMESC---VDASPL-VVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEG--RIECSAAVLADFSQVVVG 605 (900)
Q Consensus 532 ~~~~~W~~~~~~~---v~~sp~-v~~~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~--~~~~~~~~~~~~~~i~vg 605 (900)
.-.++|.+.+.+. ..+.|. + ..++.+|+++.+|.|+++|+.+|+.+|+..+.. ....++....+ +.||++
T Consensus 42 ~g~~~W~~~~~~~~~~~~~~~~~~---~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~-G~i~~g 117 (370)
T COG1520 42 SGTLLWSVSLGSGGGGIYAGPAPA---DGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSD-GKIYVG 117 (370)
T ss_pred CcceeeeeecccCccceEeccccE---eeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeC-CeEEEe
Confidence 3456788665443 344552 3 279999999999999999999999999988774 44445555554 579999
Q ss_pred eeCCEEEEEECCCCcEEEEEecCC--ceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccC----CccccCcee
Q 002615 606 CYKGKIYFLDYLTGDIYWTFQTCG--EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG----GSIFGSPAI 679 (900)
Q Consensus 606 ~~dg~l~~~d~~tG~~~w~~~~~~--~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~----~~~~~~~~~ 679 (900)
+.+|.+|++|..+|+.+|++..++ .....+++. ++.+|.++.+++++++|..+|+.+|.+... ..+.+++.+
T Consensus 118 ~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~--~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~ 195 (370)
T COG1520 118 SWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVG--DGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI 195 (370)
T ss_pred cccceEEEEECCCCcEEEEEecCCCeEEecCcEEc--CcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee
Confidence 999999999988999999999888 333344443 478999988899999999999999997663 344556664
Q ss_pred eccCCEEEEEeC--CCcEEEEEcCCCCceeeeEeecCCcc---------eeeeeeeeCCCEEEEEeecCcEEEEC-CCCC
Q 002615 680 DEVHDVLYVAST--SGRLTAISVKALPFHTLWLHELEVPA---------FASLCITSANRHVICCLVDGHVVALD-SSGS 747 (900)
Q Consensus 680 ~~~~~~l~v~t~--~g~l~~~~~~~~~g~~~w~~~~~~~~---------~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~ 747 (900)
. .+.+|+++. ++.++++|+.+ |..+|+.+..... .........++.++.+..++.++|++ .+|+
T Consensus 196 ~--~~~vy~~~~~~~~~~~a~~~~~--G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~ 271 (370)
T COG1520 196 A--SGTVYVGSDGYDGILYALNAED--GTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGE 271 (370)
T ss_pred e--cceEEEecCCCcceEEEEEccC--CcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCc
Confidence 4 489999988 77899999988 9999995432211 11112223355667788888899999 9999
Q ss_pred EEeeecCCCceeccccc---cccCCCeEEEEeeC------CeEEEEeCCCCce--eeEEecCCceecccccccccccccc
Q 002615 748 IIWRCRTGGPIFAGPCT---SFALPSQVLICSRN------GSIYSFEQESGNL--LWEYSVGDPITASAYIDEHLQLKLE 816 (900)
Q Consensus 748 ~~w~~~~~~~~~~~~~~---~~~~~~~l~~g~~d------g~l~~~d~~tG~~--~w~~~~~~~~~~~~~~~~~~~~~~~ 816 (900)
++|+++....+.+.+.. ....++.+++.... +.+++++...|.. .|.+...+......
T Consensus 272 ~~W~~~~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~w~~~~~g~~~~~~----------- 340 (370)
T COG1520 272 LIWSFPAGGSVQGSGLYTTPVAGADGKVYIGFTDNDGRGSGSLYALADVPGGTLLKWSYPVGGGYSLST----------- 340 (370)
T ss_pred eEEEEecccEeccCCeeEEeecCCCccEEEEEeccccccccceEEEeccCCCeeEEEEEeCCCceeccc-----------
Confidence 99999875222222211 12247788877543 4578999877877 89988776322222
Q ss_pred cccCCCeEEEEEcCCCc-EEEEE
Q 002615 817 SCLSIDRLVCICTSSGS-IHILR 838 (900)
Q Consensus 817 ~~~~~~~~l~~g~~~G~-v~~~d 838 (900)
...+++.+|.+..++. ||.+.
T Consensus 341 -~~~~~g~~y~~~~~~~~ly~~~ 362 (370)
T COG1520 341 -VAGSDGTLYFGGDDGRGLYAFR 362 (370)
T ss_pred -ceeccCeEEecccCCceEEEEc
Confidence 2334889999999997 77764
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-17 Score=171.37 Aligned_cols=217 Identities=23% Similarity=0.390 Sum_probs=162.0
Q ss_pred CCEEEEEECCCCcEEEEEecCCceeeeee-EeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEE
Q 002615 608 KGKIYFLDYLTGDIYWTFQTCGEVKCQPV-VDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVL 686 (900)
Q Consensus 608 dg~l~~~d~~tG~~~w~~~~~~~~~~~~~-~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l 686 (900)
+|.|+++|+.+|+.+|+..........+. ....++.+|+++.++.|++||..+|+.+|++.+.+.+...|...+ +.+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~--~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDG--GRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEET--TEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecc--ccc
Confidence 68999999999999999987432222220 111358899999999999999999999999999777777776665 999
Q ss_pred EEEeCCCcEEEEEcCCCCceeeeEe-ecCCc---ceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCCceecc
Q 002615 687 YVASTSGRLTAISVKALPFHTLWLH-ELEVP---AFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAG 761 (900)
Q Consensus 687 ~v~t~~g~l~~~~~~~~~g~~~w~~-~~~~~---~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~~~~~ 761 (900)
|+++.++.++++|..+ |+.+|+. ....+ ......+...++.++++..++.++++| .+|+++|++....+....
T Consensus 80 ~v~~~~~~l~~~d~~t--G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKT--GKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEETTSEEEEEETTT--SCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred ccccceeeeEecccCC--cceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 9999889999999888 9999994 43321 223334444588999998899999999 999999999764432111
Q ss_pred c--------cccccCCCeEEEEeeCCeEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCc
Q 002615 762 P--------CTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGS 833 (900)
Q Consensus 762 ~--------~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~ 833 (900)
+ ......++.+|+++.+|.+.++|.++|+.+|+.. .......+. ..++.+|+++.+|.
T Consensus 158 ~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~~~~-------------~~~~~l~~~~~~~~ 223 (238)
T PF13360_consen 158 PISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYSLPS-------------VDGGTLYVTSSDGR 223 (238)
T ss_dssp -EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEEC-SS-ECECEE-------------CCCTEEEEEETTTE
T ss_pred ceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEec-CCCccCCce-------------eeCCEEEEEeCCCE
Confidence 0 1112235699999999988888999999999666 333332222 22788999889999
Q ss_pred EEEEEeecC
Q 002615 834 IHILRVNLD 842 (900)
Q Consensus 834 v~~~d~~~~ 842 (900)
|++||.++|
T Consensus 224 l~~~d~~tG 232 (238)
T PF13360_consen 224 LYALDLKTG 232 (238)
T ss_dssp EEEEETTTT
T ss_pred EEEEECCCC
Confidence 999999988
|
... |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.1e-17 Score=185.79 Aligned_cols=221 Identities=17% Similarity=0.228 Sum_probs=156.4
Q ss_pred EEEEECCCCcEEEEEecCC----------ceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceee-----
Q 002615 569 FICADAKRSSVLWEIKLEG----------RIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC----- 633 (900)
Q Consensus 569 l~~~d~~tG~~~w~~~~~~----------~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~----- 633 (900)
|..-|..+.++.|.+..++ ..+.++++.. +.+|+++.++.|+++|.+||+++|+++.......
T Consensus 156 In~~NV~~L~~aWt~~tGd~~~~~~~~~~~~e~TPlvvg--g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~ 233 (764)
T TIGR03074 156 INPDNVGNLKVAWTYHTGDLKTPDDPGEATFQATPLKVG--DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQ 233 (764)
T ss_pred cCcccccCceEEEEEECCCccccccccccccccCCEEEC--CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccc
Confidence 3344455667788876653 2355666654 5899999999999999999999999987543211
Q ss_pred ----eeeEe---------------CCCCEEEEecCCCeEEEEECCCCeEEEeeccCCc----------------cccCce
Q 002615 634 ----QPVVD---------------APRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS----------------IFGSPA 678 (900)
Q Consensus 634 ----~~~~~---------------~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~----------------~~~~~~ 678 (900)
..... ...+.||+++.|+.|+++|.+||+.+|.+..++. ..++|+
T Consensus 234 ~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~ 313 (764)
T TIGR03074 234 TCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPL 313 (764)
T ss_pred cccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCE
Confidence 00010 1346899999999999999999999998765332 356788
Q ss_pred eeccCCEEEEEeC----------CCcEEEEEcCCCCceeeeEeecCCcce------------------eeeeeeeCCCEE
Q 002615 679 IDEVHDVLYVAST----------SGRLTAISVKALPFHTLWLHELEVPAF------------------ASLCITSANRHV 730 (900)
Q Consensus 679 ~~~~~~~l~v~t~----------~g~l~~~~~~~~~g~~~w~~~~~~~~~------------------~s~~~~~~~~~i 730 (900)
+.+ +.|++|+. +|.|++||.++ |+++|+.....+.. ....+....+.+
T Consensus 314 V~~--g~VIvG~~v~d~~~~~~~~G~I~A~Da~T--Gkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glv 389 (764)
T TIGR03074 314 VAG--TTVVIGGRVADNYSTDEPSGVIRAFDVNT--GALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLV 389 (764)
T ss_pred EEC--CEEEEEecccccccccCCCcEEEEEECCC--CcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeE
Confidence 876 89999863 68899999998 99999987542111 122333445667
Q ss_pred EEEe------------------ecCcEEEEC-CCCCEEeeecCCC-c-----eeccccccc--cCCC----eEEEEeeCC
Q 002615 731 ICCL------------------VDGHVVALD-SSGSIIWRCRTGG-P-----IFAGPCTSF--ALPS----QVLICSRNG 779 (900)
Q Consensus 731 ~~~~------------------~~g~v~~~d-~~G~~~w~~~~~~-~-----~~~~~~~~~--~~~~----~l~~g~~dg 779 (900)
|+++ +.+.|.++| .+|+++|.++.-. . ..+.|.+.. ..++ .++.++.+|
T Consensus 390 y~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G 469 (764)
T TIGR03074 390 YLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQG 469 (764)
T ss_pred EEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCC
Confidence 7643 235689999 9999999987522 1 122232211 1144 699999999
Q ss_pred eEEEEeCCCCceeeEE
Q 002615 780 SIYSFEQESGNLLWEY 795 (900)
Q Consensus 780 ~l~~~d~~tG~~~w~~ 795 (900)
.+|++|.+||+++|..
T Consensus 470 ~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 470 QIYVLDRRTGEPIVPV 485 (764)
T ss_pred EEEEEECCCCCEEeec
Confidence 9999999999999964
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-14 Score=142.00 Aligned_cols=307 Identities=11% Similarity=0.056 Sum_probs=213.7
Q ss_pred CceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeee
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 635 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 635 (900)
....+..|+.|..-+.|+..+|...-....++.-..+..++.++.++..|..+|.|..|...+|...|.+.....-..-.
T Consensus 75 ~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl 154 (399)
T KOG0296|consen 75 NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWL 154 (399)
T ss_pred CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEE
Confidence 45667778888889999999999776666665555678899999999999999999999999999999986322222333
Q ss_pred eEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCC
Q 002615 636 VVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV 715 (900)
Q Consensus 636 ~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~ 715 (900)
.+.+....++.|+.||.+++|.+.++.....+..++....+-.+.+++.+++.+..+|.|.+||+++ |.++.+..-..
T Consensus 155 ~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt--g~p~~~~~~~e 232 (399)
T KOG0296|consen 155 KWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKT--GQPLHKITQAE 232 (399)
T ss_pred EecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCC--CceeEEecccc
Confidence 4556667888999999999999988655545544443333334445578999999999999999998 98887765322
Q ss_pred cce-eeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCCc------------eeccccccccCCCeEEEEeeCCeE
Q 002615 716 PAF-ASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP------------IFAGPCTSFALPSQVLICSRNGSI 781 (900)
Q Consensus 716 ~~~-~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~------------~~~~~~~~~~~~~~l~~g~~dg~l 781 (900)
... ........+..++.|+.++.++..+ .+|+++.-.....+ +-+.|.... =....+|+-||+|
T Consensus 233 ~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~--lpL~A~G~vdG~i 310 (399)
T KOG0296|consen 233 GLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSK--LPLAACGSVDGTI 310 (399)
T ss_pred cCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccc--cchhhcccccceE
Confidence 211 1122333455777788888888888 78888755442111 111111001 1134567889999
Q ss_pred EEEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecCcccccccccccceeeeeee
Q 002615 782 YSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKL 861 (900)
Q Consensus 782 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 861 (900)
..||..+-+++.+.....+++..-+.. ...+++++.+|.|+.||.++| ++...+
T Consensus 311 ~iyD~a~~~~R~~c~he~~V~~l~w~~-------------t~~l~t~c~~g~v~~wDaRtG-------------~l~~~y 364 (399)
T KOG0296|consen 311 AIYDLAASTLRHICEHEDGVTKLKWLN-------------TDYLLTACANGKVRQWDARTG-------------QLKFTY 364 (399)
T ss_pred EEEecccchhheeccCCCceEEEEEcC-------------cchheeeccCceEEeeecccc-------------ceEEEE
Confidence 999999888888777777765544332 468999999999999999988 555444
Q ss_pred ccCCccccCcee--eCCEEEEeeeCCeEEEEEc
Q 002615 862 ELQGDIFSSPVM--IGGRVFVGCRDDYIYCIAL 892 (900)
Q Consensus 862 ~l~~~~~ss~~~--~~~~l~vg~~dg~l~~ld~ 892 (900)
.-+...+-..++ ..+.++.++.|+...+|+.
T Consensus 365 ~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 365 TGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred ecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 443332222222 4567777888888877753
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.4e-15 Score=144.18 Aligned_cols=289 Identities=12% Similarity=0.091 Sum_probs=195.1
Q ss_pred ceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCC
Q 002615 592 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG 671 (900)
Q Consensus 592 ~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~ 671 (900)
++.+.++...+..|+.|..-|.|+..+|.......-+...+.+..+..++.+|.+|.-+|.|..|...+|...|++....
T Consensus 69 avsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~ 148 (399)
T KOG0296|consen 69 AVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEV 148 (399)
T ss_pred EEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeeccc
Confidence 34455566678888889999999999999766666566666666777778889999999999999999999999985222
Q ss_pred ccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEe
Q 002615 672 SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIW 750 (900)
Q Consensus 672 ~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w 750 (900)
.-..-....+....+++|+.+|.+.+|.+.+ +.....+..+........+.+++++++.+..||.|.+|| .+|+++.
T Consensus 149 ~dieWl~WHp~a~illAG~~DGsvWmw~ip~--~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~ 226 (399)
T KOG0296|consen 149 EDIEWLKWHPRAHILLAGSTDGSVWMWQIPS--QALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLH 226 (399)
T ss_pred CceEEEEecccccEEEeecCCCcEEEEECCC--cceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeE
Confidence 1111122233357889999999999999887 444444444443445556778899999999999999999 9999988
Q ss_pred eecCCCceecccccccc-CCCeEEEEeeCCeEEEEeCCCCceeeEEecCCceeccccccc-ccccccccccCCCeEEEEE
Q 002615 751 RCRTGGPIFAGPCTSFA-LPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDE-HLQLKLESCLSIDRLVCIC 828 (900)
Q Consensus 751 ~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~g 828 (900)
+.+..... -.|++... ....++.|+.++.++..+..+|+++...+-..+ ...+.... .-.+........-.+.++|
T Consensus 227 ~~~~~e~~-~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~-~l~~~~e~~~esve~~~~ss~lpL~A~G 304 (399)
T KOG0296|consen 227 KITQAEGL-ELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVP-ELKPSQEELDESVESIPSSSKLPLAACG 304 (399)
T ss_pred EecccccC-cCCccccccccceeEeccCCccEEEEccccceEEEecCCCCc-cccccchhhhhhhhhcccccccchhhcc
Confidence 77643322 23333332 345678888899999999999998865542111 01110000 0000011111224567888
Q ss_pred cCCCcEEEEEeecCcccccccccccceeeeeeeccCCccccCceee-CCEEEEeeeCCeEEEEEccccccc
Q 002615 829 TSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMI-GGRVFVGCRDDYIYCIALETQHLE 898 (900)
Q Consensus 829 ~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~~-~~~l~vg~~dg~l~~ld~~tg~~~ 898 (900)
+-||+|.+||...- +.+.....+..+.. .... ..+|+.+|.+|.++.||..||+++
T Consensus 305 ~vdG~i~iyD~a~~-------------~~R~~c~he~~V~~-l~w~~t~~l~t~c~~g~v~~wDaRtG~l~ 361 (399)
T KOG0296|consen 305 SVDGTIAIYDLAAS-------------TLRHICEHEDGVTK-LKWLNTDYLLTACANGKVRQWDARTGQLK 361 (399)
T ss_pred cccceEEEEecccc-------------hhheeccCCCceEE-EEEcCcchheeeccCceEEeeeccccceE
Confidence 99999999998754 22333333333222 2222 378999999999999999999875
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-15 Score=146.72 Aligned_cols=271 Identities=13% Similarity=0.077 Sum_probs=188.5
Q ss_pred CceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEE-EecCCceeee
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWT-FQTCGEVKCQ 634 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~-~~~~~~~~~~ 634 (900)
.+..+..|+.|.++..||..|-.+....+.+.....+...++|+..|..||.||.|.+||+++|+++-. +..+......
T Consensus 126 ~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~ 205 (480)
T KOG0271|consen 126 TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITA 205 (480)
T ss_pred CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeE
Confidence 466889999999999999999999888888887777899999999999999999999999999987532 2223322222
Q ss_pred eeE-----eCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeee
Q 002615 635 PVV-----DAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLW 709 (900)
Q Consensus 635 ~~~-----~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w 709 (900)
..+ .+..+.+..++.||.+..||...|+++.....+.....+... +.++.||.|+.|++|..|+... |...-
T Consensus 206 Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrw-GG~gliySgS~DrtIkvw~a~d--G~~~r 282 (480)
T KOG0271|consen 206 LAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRW-GGEGLIYSGSQDRTIKVWRALD--GKLCR 282 (480)
T ss_pred EeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEE-cCCceEEecCCCceEEEEEccc--hhHHH
Confidence 222 233456788899999999999999998876655444443333 3368999999999999999776 65443
Q ss_pred EeecCCcceeee------------------------------------eeeeCCCEEEEEeecCcEEEEC--CCCCEEee
Q 002615 710 LHELEVPAFASL------------------------------------CITSANRHVICCLVDGHVVALD--SSGSIIWR 751 (900)
Q Consensus 710 ~~~~~~~~~~s~------------------------------------~~~~~~~~i~~~~~~g~v~~~d--~~G~~~w~ 751 (900)
....+..-+... ..-..+.+++.|+.|..++.++ .+-+.+-+
T Consensus 283 ~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~r 362 (480)
T KOG0271|consen 283 ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITR 362 (480)
T ss_pred hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhh
Confidence 332221111111 1112245799999999999999 44445433
Q ss_pred ecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEEecC-CceecccccccccccccccccCCCeEEEEEcC
Q 002615 752 CRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVG-DPITASAYIDEHLQLKLESCLSIDRLVCICTS 830 (900)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 830 (900)
.......... +...-+...|..++.|..|..||..+|+++-++.-+ ..+|......+ .+++..|+.
T Consensus 363 mtgHq~lVn~-V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaD------------sRLlVS~Sk 429 (480)
T KOG0271|consen 363 MTGHQALVNH-VSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSAD------------SRLLVSGSK 429 (480)
T ss_pred hhchhhheee-EEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccC------------ccEEEEcCC
Confidence 3322111111 111112345667788999999999999998877633 34444443333 679999999
Q ss_pred CCcEEEEEeecC
Q 002615 831 SGSIHILRVNLD 842 (900)
Q Consensus 831 ~G~v~~~d~~~~ 842 (900)
|.+|.+|+.++.
T Consensus 430 DsTLKvw~V~tk 441 (480)
T KOG0271|consen 430 DSTLKVWDVRTK 441 (480)
T ss_pred CceEEEEEeeee
Confidence 999999999854
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.3e-14 Score=134.05 Aligned_cols=275 Identities=12% Similarity=0.091 Sum_probs=198.6
Q ss_pred ceEEEEecCCCeEEEEECC-----CCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCce
Q 002615 557 DIYLFVGSHSHKFICADAK-----RSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV 631 (900)
Q Consensus 557 ~~~v~igs~~g~l~~~d~~-----tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~ 631 (900)
.+.++.++.|..+..|++. .|.++..+..+........++.++++.+.+++|+.++.||..+|+..-+|..+...
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~d 107 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKD 107 (315)
T ss_pred CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCc
Confidence 4556777778877777654 46667777776666677888999999999999999999999999998889888888
Q ss_pred eeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccC--CccccCceeecc--CCEEEEEeCCCcEEEEEcCCCCcee
Q 002615 632 KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG--GSIFGSPAIDEV--HDVLYVASTSGRLTAISVKALPFHT 707 (900)
Q Consensus 632 ~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~--~~~~~~~~~~~~--~~~l~v~t~~g~l~~~~~~~~~g~~ 707 (900)
+.+..+..++..|+.|+.|.++..||... .+..+..-+ ....+...+.++ +-.|..+++|+.+..||+++ -+.
T Consensus 108 Vlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~--~~l 184 (315)
T KOG0279|consen 108 VLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN--CQL 184 (315)
T ss_pred eEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC--cch
Confidence 88888888889999999999999999764 555555443 344555566664 34677788999999999987 555
Q ss_pred eeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCCceeccccccccCCCeEEEE-eeCCeEEEEe
Q 002615 708 LWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLIC-SRNGSIYSFE 785 (900)
Q Consensus 708 ~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g-~~dg~l~~~d 785 (900)
.-.+..+........+++++..+..|+.+|.++.+| ..|+-++.+.....+.+.. + ..+..|++ ..+-.|..||
T Consensus 185 ~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~---f-spnrywL~~at~~sIkIwd 260 (315)
T KOG0279|consen 185 RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLC---F-SPNRYWLCAATATSIKIWD 260 (315)
T ss_pred hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEE---e-cCCceeEeeccCCceEEEe
Confidence 555555555556777888888888899999999999 8888888887666665543 2 23344443 3455699999
Q ss_pred CCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEee
Q 002615 786 QESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 840 (900)
Q Consensus 786 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~ 840 (900)
.+++..+-.++......+...-. .....-....++..++.|.++|.|++|...
T Consensus 261 l~~~~~v~~l~~d~~g~s~~~~~--~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 261 LESKAVVEELKLDGIGPSSKAGD--PICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ccchhhhhhccccccccccccCC--cEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 99998887665432211100000 000000112348899999999999999764
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.9e-14 Score=147.96 Aligned_cols=267 Identities=15% Similarity=0.150 Sum_probs=187.1
Q ss_pred CceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeee
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 635 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 635 (900)
.+..+++++.+|.++.||..+++.......+........+.+++..+++++.+|.++.||..+++....+..+.......
T Consensus 20 ~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~ 99 (289)
T cd00200 20 DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSV 99 (289)
T ss_pred CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEE
Confidence 45788888889999999999988777666554433456677777789999999999999999888777776555344444
Q ss_pred eEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCC
Q 002615 636 VVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV 715 (900)
Q Consensus 636 ~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~ 715 (900)
.+.+++..+++++.++.++.||..+++....+...........+.+.+..+++++.+|.+..||.++ ++.+.....+.
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~--~~~~~~~~~~~ 177 (289)
T cd00200 100 AFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT--GKCVATLTGHT 177 (289)
T ss_pred EEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc--cccceeEecCc
Confidence 5555556666777699999999998888887764443444455555445666666699999999886 66666665544
Q ss_pred cceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeec-CCCceeccccccccCCCeEEEEee-CCeEEEEeCCCCcee
Q 002615 716 PAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCR-TGGPIFAGPCTSFALPSQVLICSR-NGSIYSFEQESGNLL 792 (900)
Q Consensus 716 ~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~-~~~~~~~~~~~~~~~~~~l~~g~~-dg~l~~~d~~tG~~~ 792 (900)
.......+..++..+++++.++.+..|| .+++.+..+. ....+... ....++.+++++. +|.++.||..+++..
T Consensus 178 ~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~~~~~~~~i~i~~~~~~~~~ 254 (289)
T cd00200 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSV---AFSPDGYLLASGSEDGTIRVWDLRTGECV 254 (289)
T ss_pred cccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEE---EEcCCCcEEEEEcCCCcEEEEEcCCceeE
Confidence 3445556666666888888899999999 7777765553 22233222 1222345555544 999999999988887
Q ss_pred eEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEE
Q 002615 793 WEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILR 838 (900)
Q Consensus 793 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d 838 (900)
..+...........+.. ++..+++++.+|.+.+|+
T Consensus 255 ~~~~~~~~~i~~~~~~~-----------~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 255 QTLSGHTNSVTSLAWSP-----------DGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEccccCCcEEEEEECC-----------CCCEEEEecCCCeEEecC
Confidence 76653332222222222 267899999999999884
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-14 Score=133.14 Aligned_cols=243 Identities=14% Similarity=0.126 Sum_probs=184.9
Q ss_pred eeCCceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCcee
Q 002615 553 LKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK 632 (900)
Q Consensus 553 ~~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~ 632 (900)
..-++++......+..|..||+..|.++.++..++.-..-+..+.|+..+..+..|..++.||..||++..++..+..-.
T Consensus 25 yN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqV 104 (307)
T KOG0316|consen 25 YNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQV 104 (307)
T ss_pred EccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeeccccccee
Confidence 34456666666678899999999999999998887654455666676788888889999999999999998888877666
Q ss_pred eeeeEeCCCCEEEEecCCCeEEEEECCCC--eEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeE
Q 002615 633 CQPVVDAPRQLIWCGSHDHNLYALDFRNY--RCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWL 710 (900)
Q Consensus 633 ~~~~~~~~~~~i~~gs~dg~l~~~d~~~g--~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~ 710 (900)
-...+.++...++.|+.|..+.+||-.+. +++..+.....-.++..+. +..|+.|+.+|++..||+.. |.. ..
T Consensus 105 NtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~--G~l-~s 179 (307)
T KOG0316|consen 105 NTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRK--GTL-SS 179 (307)
T ss_pred eEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeec--cee-eh
Confidence 66667777788999999999999997764 4454444333334444444 37899999999999999997 653 33
Q ss_pred eecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCC-ceeccccccccCCCeEEEEeeCCeEEEEeCCC
Q 002615 711 HELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQES 788 (900)
Q Consensus 711 ~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~-~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~t 788 (900)
...+.|+ .+..+..+++...+++.++.+..+| .+|+++-.++... .-+...|.....+..++.|+.||.+|.||..+
T Consensus 180 Dy~g~pi-t~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 180 DYFGHPI-TSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred hhcCCcc-eeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecc
Confidence 3344444 5667778888999999999999999 8999886655322 22333343344566789999999999999999
Q ss_pred CceeeEEecCCce
Q 002615 789 GNLLWEYSVGDPI 801 (900)
Q Consensus 789 G~~~w~~~~~~~~ 801 (900)
++++-++..++.+
T Consensus 259 ~~~~sk~~~~~~v 271 (307)
T KOG0316|consen 259 ETQISKLSVVSTV 271 (307)
T ss_pred ceeeeeeccCCce
Confidence 9999888877765
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.8e-13 Score=141.74 Aligned_cols=272 Identities=17% Similarity=0.165 Sum_probs=181.6
Q ss_pred eeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeecc
Q 002615 590 ECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC 669 (900)
Q Consensus 590 ~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~ 669 (900)
..+..++++++.+++++.+|.++.||..+++.......+........+.+++..+++++.+|.++.||..+++.+..+..
T Consensus 12 i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~ 91 (289)
T cd00200 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTG 91 (289)
T ss_pred EEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEec
Confidence 34667778888999999999999999999887776665544444555666667899999999999999998877777665
Q ss_pred CCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCE
Q 002615 670 GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSI 748 (900)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~ 748 (900)
...........+.+..+++++.+|.+..||..+ ++.......+........+..++..+++++.++.+..+| .+++.
T Consensus 92 ~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~ 169 (289)
T cd00200 92 HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET--GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC 169 (289)
T ss_pred cCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC--cEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc
Confidence 443344444554345555555599999999886 677766654443345555555556666666699999999 77777
Q ss_pred EeeecCCC-ceeccccccccC-CCeEEEEeeCCeEEEEeCCCCceeeEEecCC-ceecccccccccccccccccCCCeEE
Q 002615 749 IWRCRTGG-PIFAGPCTSFAL-PSQVLICSRNGSIYSFEQESGNLLWEYSVGD-PITASAYIDEHLQLKLESCLSIDRLV 825 (900)
Q Consensus 749 ~w~~~~~~-~~~~~~~~~~~~-~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l 825 (900)
+..+.... .+... .... +..+++++.+|.++.||..+++....+.... .+... .... .+..+
T Consensus 170 ~~~~~~~~~~i~~~---~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~-~~~~-----------~~~~~ 234 (289)
T cd00200 170 VATLTGHTGEVNSV---AFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSV-AFSP-----------DGYLL 234 (289)
T ss_pred ceeEecCccccceE---EECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEE-EEcC-----------CCcEE
Confidence 65554332 22111 1222 3478888889999999999888776653332 22222 2221 15566
Q ss_pred EEEcCCCcEEEEEeecCcccccccccccceeeeeeeccCCccccCceee--CCEEEEeeeCCeEEEEE
Q 002615 826 CICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMI--GGRVFVGCRDDYIYCIA 891 (900)
Q Consensus 826 ~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~~--~~~l~vg~~dg~l~~ld 891 (900)
++++.+|.|++|+..++ +....+..+...+....+. +..+++++.||.+..|+
T Consensus 235 ~~~~~~~~i~i~~~~~~-------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 235 ASGSEDGTIRVWDLRTG-------------ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEcCCCcEEEEEcCCc-------------eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 66666999999998754 2222222222223333333 36888899999998875
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.8e-13 Score=127.76 Aligned_cols=268 Identities=10% Similarity=-0.016 Sum_probs=200.2
Q ss_pred CceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCC----cE--EEEEecCC
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTG----DI--YWTFQTCG 629 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG----~~--~w~~~~~~ 629 (900)
+..++..+|.||.+..||..|.....-++++....-++.+++.++.|..|.-|+....|++.+- .. ...+..+.
T Consensus 66 Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHt 145 (343)
T KOG0286|consen 66 DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHT 145 (343)
T ss_pred CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCcc
Confidence 5678889999999999999999888888888776667889999999999999987777766543 22 22344455
Q ss_pred ceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeec-cCCEEEEEeCCCcEEEEEcCCCCceee
Q 002615 630 EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDE-VHDVLYVASTSGRLTAISVKALPFHTL 708 (900)
Q Consensus 630 ~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~-~~~~l~v~t~~g~l~~~~~~~~~g~~~ 708 (900)
...+...+.+ ++.|+++|.|.+...||.++|+.+..+..+..-..+..+.+ +.+..+.|+.++.-+.||.+. +...
T Consensus 146 gylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~--~~c~ 222 (343)
T KOG0286|consen 146 GYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS--GQCV 222 (343)
T ss_pred ceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC--ccee
Confidence 5555555554 68899999999999999999999988876543333333444 456777788899999999998 8888
Q ss_pred eEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCCceeccccccccC-CCeEEEEeeCCeEEEEeC
Q 002615 709 WLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFAL-PSQVLICSRNGSIYSFEQ 786 (900)
Q Consensus 709 w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~-~~~l~~g~~dg~l~~~d~ 786 (900)
..+..+...+.+..+.+++..+..|+.|+...+|| ..++.+-.+.....+.....+.+.. +..++.|..|.+.++||.
T Consensus 223 qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 223 QTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred EeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeec
Confidence 88887777778888999999999999999999999 7777776665443332222222333 445677778899999999
Q ss_pred CCCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEE
Q 002615 787 ESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHIL 837 (900)
Q Consensus 787 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~ 837 (900)
-.|+..-.+.-+.+-++..-+. +++.-++.|+.|-.|.+|
T Consensus 303 lk~e~vg~L~GHeNRvScl~~s-----------~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 303 LKGERVGVLAGHENRVSCLGVS-----------PDGMAVATGSWDSTLRIW 342 (343)
T ss_pred cccceEEEeeccCCeeEEEEEC-----------CCCcEEEecchhHheeec
Confidence 9888877666555544443332 237788888888888887
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.7e-13 Score=124.80 Aligned_cols=265 Identities=11% Similarity=0.138 Sum_probs=187.9
Q ss_pred EEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcE--EEEEecCCceeeeeeE
Q 002615 560 LFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDI--YWTFQTCGEVKCQPVV 637 (900)
Q Consensus 560 v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~--~w~~~~~~~~~~~~~~ 637 (900)
+..+++|++|..|.+.||.+...+...+.-.....++++++.+.++++ ..|..||..++.. +-+|..+.......-+
T Consensus 13 LvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF 91 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGF 91 (311)
T ss_pred EEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEE
Confidence 677889999999999999999988887776667788899888888875 4599999888765 6677777555666667
Q ss_pred eCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcc
Q 002615 638 DAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPA 717 (900)
Q Consensus 638 ~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~ 717 (900)
..++...|+|+.||++..||.+.-.+...++.. ....+.++.++...|++++.+|.|.+||+.+..-...-.-+ ....
T Consensus 92 ~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe-~~~~ 169 (311)
T KOG0315|consen 92 QCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE-DDTS 169 (311)
T ss_pred eecCeEEEecCCCceEEEEeccCcccchhccCC-CCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC-CCcc
Confidence 777888999999999999999987666666555 44556677777888999999999999998862221111111 1122
Q ss_pred eeeeeeeeCCCEEEEEeecCcEEEEC-CCCCE------EeeecCC-CceeccccccccCCCeEEEEeeCCeEEEEeCCCC
Q 002615 718 FASLCITSANRHVICCLVDGHVVALD-SSGSI------IWRCRTG-GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESG 789 (900)
Q Consensus 718 ~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~------~w~~~~~-~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG 789 (900)
..+..+..++.++..++..|+.|+++ .++.. +.+++.. +.+. .|...-....|..++.|.++++|+.++-
T Consensus 170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il--~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHIL--RCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred eeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEE--EEEECCCCcEEEeecCCceEEEEecCCc
Confidence 35667777888888888899999999 44432 2222211 1111 1222223456777888999999997765
Q ss_pred ceeeEEecCCc---eecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecC
Q 002615 790 NLLWEYSVGDP---ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 842 (900)
Q Consensus 790 ~~~w~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~ 842 (900)
++-+..+.+. +.-..|..+ +.+|+.|+.|+..++|+...+
T Consensus 248 -~kle~~l~gh~rWvWdc~FS~d------------g~YlvTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 248 -FKLELVLTGHQRWVWDCAFSAD------------GEYLVTASSDHTARLWDLSAG 290 (311)
T ss_pred -eeeEEEeecCCceEEeeeeccC------------ccEEEecCCCCceeecccccC
Confidence 4333333222 233333333 889999999999999999876
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.9e-13 Score=142.01 Aligned_cols=286 Identities=15% Similarity=0.123 Sum_probs=204.3
Q ss_pred CCceEEEEecCC-CeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceee
Q 002615 555 DSDIYLFVGSHS-HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 633 (900)
Q Consensus 555 ~~~~~v~igs~~-g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 633 (900)
..++.|.+|+.. |.|..|+-.+..-+-+...+..-..+..+++||+.|..|+.||.|..||..+|-..-+|.-+....+
T Consensus 317 ~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt 396 (893)
T KOG0291|consen 317 STGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVT 396 (893)
T ss_pred ccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceE
Confidence 346777777754 7888888877766656555544456788999999999999999999999999998888887776666
Q ss_pred eeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCcc-ccCceeeccCCEEEEEeCCC-cEEEEEcCCCCceeeeEe
Q 002615 634 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSI-FGSPAIDEVHDVLYVASTSG-RLTAISVKALPFHTLWLH 711 (900)
Q Consensus 634 ~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~-~~~~~~~~~~~~l~v~t~~g-~l~~~~~~~~~g~~~w~~ 711 (900)
...+...++.+++.|-||++.+||.+.......+..+.++ +++.++++.+..+.+|+.+. .|+.|+.++ |+.+-..
T Consensus 397 ~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qT--GqllDiL 474 (893)
T KOG0291|consen 397 AVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT--GQLLDIL 474 (893)
T ss_pred EEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeec--Ceeeehh
Confidence 6677777888999999999999999999988888887765 45566666667777777654 688999998 9988877
Q ss_pred ecCCcceeeeeeeeCCCEEEEEeecCcEEEEC---CCCCEEeeecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCC
Q 002615 712 ELEVPAFASLCITSANRHVICCLVDGHVVALD---SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQES 788 (900)
Q Consensus 712 ~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d---~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~t 788 (900)
..+....+...+.+.+..++.+++|.+|..|| .+|+ +-++.....+.... ..-.+..|.+.+.||.|..||.+.
T Consensus 475 sGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~-vEtl~i~sdvl~vs--frPdG~elaVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 475 SGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT-VETLEIRSDVLAVS--FRPDGKELAVATLDGQITFFDIKE 551 (893)
T ss_pred cCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce-eeeEeeccceeEEE--EcCCCCeEEEEEecceEEEEEhhh
Confidence 77776667777888889999999999999998 3333 22333333222221 111356899999999999999988
Q ss_pred CceeeEEecCCceeccccccccc---------ccccccccCCCeEEEEEcCCCcEEEEEeecCccc
Q 002615 789 GNLLWEYSVGDPITASAYIDEHL---------QLKLESCLSIDRLVCICTSSGSIHILRVNLDVTG 845 (900)
Q Consensus 789 G~~~w~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~~ 845 (900)
+...-.++........-...+.+ .+..-....+++.|.+|+.+..|.+|+..++..-
T Consensus 552 ~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vll 617 (893)
T KOG0291|consen 552 AVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLL 617 (893)
T ss_pred ceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhee
Confidence 76654332111100000000000 0000012345889999999999999999877443
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-12 Score=138.22 Aligned_cols=328 Identities=14% Similarity=0.158 Sum_probs=225.4
Q ss_pred CceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeC-CEEEEEECCCCcEEEEEecCCceeee
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK-GKIYFLDYLTGDIYWTFQTCGEVKCQ 634 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~d-g~l~~~d~~tG~~~w~~~~~~~~~~~ 634 (900)
.-..|.+|=.+|.+..|..-+=.++........-..++.+...|+.|.+||.. |.|.+|+-++-..+.+.+.+..-..+
T Consensus 276 ~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~ 355 (893)
T KOG0291|consen 276 GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITS 355 (893)
T ss_pred CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceee
Confidence 34456666677877788887777777777665444567777778899999865 67888887666655555555555666
Q ss_pred eeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecC
Q 002615 635 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE 714 (900)
Q Consensus 635 ~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~ 714 (900)
..+.+++..|.+|+.||.|..||..+|-|.-++.-+..-.+...+...++.++..+.||++.+||++. +...-++..+
T Consensus 356 l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR--YrNfRTft~P 433 (893)
T KOG0291|consen 356 LAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR--YRNFRTFTSP 433 (893)
T ss_pred EEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc--cceeeeecCC
Confidence 77888888999999999999999999999999887766666666666678899999999999999987 7777777776
Q ss_pred Ccce-eeeeeeeCCCEEEEEeecC-cEEEEC-CCCCEEeeecC-CCceeccccccccCCCeEEEEeeCCeEEEEeCCCC-
Q 002615 715 VPAF-ASLCITSANRHVICCLVDG-HVVALD-SSGSIIWRCRT-GGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESG- 789 (900)
Q Consensus 715 ~~~~-~s~~~~~~~~~i~~~~~~g-~v~~~d-~~G~~~w~~~~-~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG- 789 (900)
.+.. ++.+..+++..+++|+.|. .|++|+ ++|+++=..+. .+|+.+.. +. ..+..|+.++.|.+|..||.-+.
T Consensus 434 ~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~-f~-~~~~~LaS~SWDkTVRiW~if~s~ 511 (893)
T KOG0291|consen 434 EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLS-FS-PDGSLLASGSWDKTVRIWDIFSSS 511 (893)
T ss_pred CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeE-Ec-cccCeEEeccccceEEEEEeeccC
Confidence 6653 4445555677777777653 688999 99998755543 34554322 11 13457899999999999997433
Q ss_pred ceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecCccc----ccccccccc--eeee-eeec
Q 002615 790 NLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTG----KENQSKDHM--VQEF-AKLE 862 (900)
Q Consensus 790 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~~----~~~~~~~~~--~~~~-~~~~ 862 (900)
..+-+++..+.+....+. +++..+++++-||.|-+||.+.+... ......... ...+ ....
T Consensus 512 ~~vEtl~i~sdvl~vsfr------------PdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~s 579 (893)
T KOG0291|consen 512 GTVETLEIRSDVLAVSFR------------PDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENS 579 (893)
T ss_pred ceeeeEeeccceeEEEEc------------CCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhc
Confidence 123344555554443333 34899999999999999999765321 000000000 0001 0111
Q ss_pred cCCccccCcee--eCCEEEEeeeCCeEEEEEcccccccc
Q 002615 863 LQGDIFSSPVM--IGGRVFVGCRDDYIYCIALETQHLEE 899 (900)
Q Consensus 863 l~~~~~ss~~~--~~~~l~vg~~dg~l~~ld~~tg~~~~ 899 (900)
-.+..|++..+ +++.|..|+..+++-.|+..++-+.+
T Consensus 580 a~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllk 618 (893)
T KOG0291|consen 580 AKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLK 618 (893)
T ss_pred ccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheee
Confidence 22334554444 56788888889999999988876644
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.2e-13 Score=124.78 Aligned_cols=234 Identities=14% Similarity=0.160 Sum_probs=172.1
Q ss_pred ceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCC
Q 002615 592 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG 671 (900)
Q Consensus 592 ~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~ 671 (900)
.+-+..+|++.+....|.++..||+..|..+.++..++.-.--.....++..+..+..|..++.||..+|+...++..+.
T Consensus 22 avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~ 101 (307)
T KOG0316|consen 22 AVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHL 101 (307)
T ss_pred EEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeeccccc
Confidence 34456678888888889999999999999999998766433333333345567777889999999999999999998877
Q ss_pred ccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEe
Q 002615 672 SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIW 750 (900)
Q Consensus 672 ~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w 750 (900)
.-.....+..+...++.|+.+..+.+||-.+.+-+++..+........+.. ..+..|+.|+.||++..|| ..|+..-
T Consensus 102 aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~--v~~heIvaGS~DGtvRtydiR~G~l~s 179 (307)
T KOG0316|consen 102 AQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSID--VAEHEIVAGSVDGTVRTYDIRKGTLSS 179 (307)
T ss_pred ceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEE--ecccEEEeeccCCcEEEEEeecceeeh
Confidence 766667777666778889999999999988766677666555444444433 3567899999999999999 8887642
Q ss_pred eecCCCceeccccccccC-CCeEEEEeeCCeEEEEeCCCCceeeEEecCCce-ecc-cccccccccccccccCCCeEEEE
Q 002615 751 RCRTGGPIFAGPCTSFAL-PSQVLICSRNGSIYSFEQESGNLLWEYSVGDPI-TAS-AYIDEHLQLKLESCLSIDRLVCI 827 (900)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~-~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~l~~ 827 (900)
.+ .+.|+.+.. +.. .+-.++++.|+.|..+|.+||+++-.|+-+.+. +.. -.+. .++..++.
T Consensus 180 Dy-~g~pit~vs---~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~-----------qsdthV~s 244 (307)
T KOG0316|consen 180 DY-FGHPITSVS---FSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLN-----------QSDTHVFS 244 (307)
T ss_pred hh-cCCcceeEE---ecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeec-----------ccceeEEe
Confidence 22 234443322 333 456888899999999999999998766543321 111 1111 23789999
Q ss_pred EcCCCcEEEEEeecC
Q 002615 828 CTSSGSIHILRVNLD 842 (900)
Q Consensus 828 g~~~G~v~~~d~~~~ 842 (900)
|++||.||+||.-+.
T Consensus 245 gSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 245 GSEDGKVYFWDLVDE 259 (307)
T ss_pred ccCCceEEEEEeccc
Confidence 999999999999765
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-13 Score=134.94 Aligned_cols=289 Identities=11% Similarity=0.032 Sum_probs=189.9
Q ss_pred EecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCe
Q 002615 583 IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR 662 (900)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~ 662 (900)
+..++....++.+++++..++.|+.|.++..||+.|-.+..+.+.+...+.+..+.+++..|..|+.||.|..||+++|+
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~ 190 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ 190 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC
Confidence 33444444577888999999999999999999999999998888888888888899999999999999999999999987
Q ss_pred EEEe-eccCCccccCce-----eeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeec
Q 002615 663 CVYK-LPCGGSIFGSPA-----IDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVD 736 (900)
Q Consensus 663 ~~w~-~~~~~~~~~~~~-----~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~ 736 (900)
++=+ +..+...+.+.+ ..+...++..++.||.+..||.+. |..+.....+...... ...-..+.+|.|+.|
T Consensus 191 ~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~--~~~~~~lsgHT~~VTC-vrwGG~gliySgS~D 267 (480)
T KOG0271|consen 191 QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL--GTCVRTLSGHTASVTC-VRWGGEGLIYSGSQD 267 (480)
T ss_pred cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC--ceEEEEeccCccceEE-EEEcCCceEEecCCC
Confidence 6532 111111111111 122234677778899999999887 7777666555443222 222346899999999
Q ss_pred CcEEEEC-CCCCEEeeecCCCc------------eeccc-----------------------cccccCCCeEEEEeeCCe
Q 002615 737 GHVVALD-SSGSIIWRCRTGGP------------IFAGP-----------------------CTSFALPSQVLICSRNGS 780 (900)
Q Consensus 737 g~v~~~d-~~G~~~w~~~~~~~------------~~~~~-----------------------~~~~~~~~~l~~g~~dg~ 780 (900)
++|.+|+ .+|...-.++..+. .-..+ .+.......++.|+.|+.
T Consensus 268 rtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~t 347 (480)
T KOG0271|consen 268 RTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFT 347 (480)
T ss_pred ceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCce
Confidence 9999999 77765433221100 00000 001122356999999999
Q ss_pred EEEEeCCCCc-eeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecCcccccccccccceeeee
Q 002615 781 IYSFEQESGN-LLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFA 859 (900)
Q Consensus 781 l~~~d~~tG~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~ 859 (900)
++.|++..-+ .+-+..-+...+....+ .+++.+|+.++-|..|.+|+.++|+ .+.
T Consensus 348 lflW~p~~~kkpi~rmtgHq~lVn~V~f-----------SPd~r~IASaSFDkSVkLW~g~tGk-------------~la 403 (480)
T KOG0271|consen 348 LFLWNPFKSKKPITRMTGHQALVNHVSF-----------SPDGRYIASASFDKSVKLWDGRTGK-------------FLA 403 (480)
T ss_pred EEEecccccccchhhhhchhhheeeEEE-----------CCCccEEEEeecccceeeeeCCCcc-------------hhh
Confidence 9999976433 33222222222222222 2348899999999999999999883 333
Q ss_pred eeccCCccccCcee-eCC-EEEEeeeCCeEEEEEccccccc
Q 002615 860 KLELQGDIFSSPVM-IGG-RVFVGCRDDYIYCIALETQHLE 898 (900)
Q Consensus 860 ~~~l~~~~~ss~~~-~~~-~l~vg~~dg~l~~ld~~tg~~~ 898 (900)
++.-+-..+..... .+. .|+.|+.|..|..|+..+.++.
T Consensus 404 sfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~ 444 (480)
T KOG0271|consen 404 SFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLK 444 (480)
T ss_pred hhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeec
Confidence 33221111222222 233 5566788999999999998875
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-14 Score=137.93 Aligned_cols=269 Identities=15% Similarity=0.164 Sum_probs=202.9
Q ss_pred CCceEEEEecCCCeEEEEECCCCcEEEEEec--------CCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEe
Q 002615 555 DSDIYLFVGSHSHKFICADAKRSSVLWEIKL--------EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQ 626 (900)
Q Consensus 555 ~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~--------~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~ 626 (900)
.++.++..||.||.|-.||-.+|+++-..+. .+....+..++.|...+..|+.||.|..|...||..+.+|+
T Consensus 223 PDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd 302 (508)
T KOG0275|consen 223 PDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD 302 (508)
T ss_pred CCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh
Confidence 3688999999999999999999998754322 12223467788888889999999999999999999988876
Q ss_pred -cCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCc
Q 002615 627 -TCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPF 705 (900)
Q Consensus 627 -~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g 705 (900)
.+..-.++..++.++..|..++.|.++..--.++|+++..+..+........+.+++..++.++.+|.+..|+.++ +
T Consensus 303 rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Kt--t 380 (508)
T KOG0275|consen 303 RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKT--T 380 (508)
T ss_pred hhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcc--h
Confidence 4555566667777778899999999999999999999988888877777777888789999999999999999887 7
Q ss_pred eeeeEeecCCcce--eeeeeeeC-CCEEEEEeecCcEEEECCCCCEEeeecCCC---ceeccccccccCCCeEEEEeeCC
Q 002615 706 HTLWLHELEVPAF--ASLCITSA-NRHVICCLVDGHVVALDSSGSIIWRCRTGG---PIFAGPCTSFALPSQVLICSRNG 779 (900)
Q Consensus 706 ~~~w~~~~~~~~~--~s~~~~~~-~~~i~~~~~~g~v~~~d~~G~~~w~~~~~~---~~~~~~~~~~~~~~~l~~g~~dg 779 (900)
+.+-+++.....+ .+..+.+. ...+++|...+.++..+-.|+++-.++.+. .-|... .....+..+|+...|+
T Consensus 381 eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~-~lSpkGewiYcigED~ 459 (508)
T KOG0275|consen 381 ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINA-ILSPKGEWIYCIGEDG 459 (508)
T ss_pred hhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEE-EecCCCcEEEEEccCc
Confidence 7777666544322 23333333 457788888889999997788887766432 222222 2233567899999999
Q ss_pred eEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEE
Q 002615 780 SIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHIL 837 (900)
Q Consensus 780 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~ 837 (900)
.+|||+..+|++..+..++.......... +..+.++.-++||.+..|
T Consensus 460 vlYCF~~~sG~LE~tl~VhEkdvIGl~HH-----------PHqNllAsYsEDgllKLW 506 (508)
T KOG0275|consen 460 VLYCFSVLSGKLERTLPVHEKDVIGLTHH-----------PHQNLLASYSEDGLLKLW 506 (508)
T ss_pred EEEEEEeecCceeeeeecccccccccccC-----------cccchhhhhcccchhhhc
Confidence 99999999999988877766543332222 225666777788877666
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.4e-13 Score=129.62 Aligned_cols=270 Identities=12% Similarity=0.081 Sum_probs=190.9
Q ss_pred CceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeee
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 635 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 635 (900)
.+..+..|+.|+.+..||..||+++-....+....-...++.-..++|.+..|+.+.|||++..+++-.+..+-..+.+.
T Consensus 162 ~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L 241 (460)
T KOG0285|consen 162 GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCL 241 (460)
T ss_pred CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEE
Confidence 47778889999999999999999987766555544567788888899999999999999999999887665443333344
Q ss_pred eEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCC
Q 002615 636 VVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV 715 (900)
Q Consensus 636 ~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~ 715 (900)
.+.+.-..|++|+.|..+..||..+...+..+..+.....+....+.+..++.++.|+.+..||+.. |+..-....+.
T Consensus 242 ~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~a--gkt~~tlt~hk 319 (460)
T KOG0285|consen 242 DLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRA--GKTMITLTHHK 319 (460)
T ss_pred eccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeecc--CceeEeeeccc
Confidence 4555667899999999999999999988888776666666666665578899999999999999998 87776665555
Q ss_pred cceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeE
Q 002615 716 PAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWE 794 (900)
Q Consensus 716 ~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~ 794 (900)
......++.+....+..++ ...+-+++ ..|..+..++....+... +....++.+++|+.+|.+..||-++|----.
T Consensus 320 ksvral~lhP~e~~fASas-~dnik~w~~p~g~f~~nlsgh~~iint--l~~nsD~v~~~G~dng~~~fwdwksg~nyQ~ 396 (460)
T KOG0285|consen 320 KSVRALCLHPKENLFASAS-PDNIKQWKLPEGEFLQNLSGHNAIINT--LSVNSDGVLVSGGDNGSIMFWDWKSGHNYQR 396 (460)
T ss_pred ceeeEEecCCchhhhhccC-CccceeccCCccchhhccccccceeee--eeeccCceEEEcCCceEEEEEecCcCccccc
Confidence 5444444544443344443 45688888 777776554332223222 2344578899999999999999988842111
Q ss_pred E---ecCC------ceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecC
Q 002615 795 Y---SVGD------PITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 842 (900)
Q Consensus 795 ~---~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~ 842 (900)
. ..++ .++++ +++. .+..++.|..|..|.+|..+..
T Consensus 397 ~~t~vqpGSl~sEagI~as-~fDk-----------tg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 397 GQTIVQPGSLESEAGIFAS-CFDK-----------TGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred ccccccCCccccccceeEE-eecc-----------cCceEEeccCCcceEEEecccc
Confidence 1 1111 12222 2222 2778888888888888866543
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-11 Score=127.22 Aligned_cols=308 Identities=15% Similarity=0.147 Sum_probs=207.3
Q ss_pred ceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEec---CCceee
Q 002615 557 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT---CGEVKC 633 (900)
Q Consensus 557 ~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~---~~~~~~ 633 (900)
--++..|+.|+.+..|+.-==++...+..+.+...++-+++||.++...+.||.+|+||-.+|+.+-.+.- +.....
T Consensus 160 PfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIf 239 (603)
T KOG0318|consen 160 PFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIF 239 (603)
T ss_pred ceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEE
Confidence 34788888999888887443344444455666667788999998888888999999999999999887763 333344
Q ss_pred eeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCcccc--CceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEe
Q 002615 634 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFG--SPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLH 711 (900)
Q Consensus 634 ~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~--~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~ 711 (900)
...+.++...+.+.+.|.++..||..+.+++.++..+..+-- --++-. .+.|+.-+.+|.+..+|+.. ++++...
T Consensus 240 alsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-kd~lItVSl~G~in~ln~~d--~~~~~~i 316 (603)
T KOG0318|consen 240 ALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-KDHLITVSLSGTINYLNPSD--PSVLKVI 316 (603)
T ss_pred EEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-CCeEEEEEcCcEEEEecccC--CChhhee
Confidence 556778888999999999999999999999988877654211 112222 47888889999999999988 6777777
Q ss_pred ecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeee-cCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCC
Q 002615 712 ELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRC-RTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESG 789 (900)
Q Consensus 712 ~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~-~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG 789 (900)
..+...+.+.....++.++|.|++||.|.-|+ .+|.----. +........ +.....+.++..+.|..|..++.+.+
T Consensus 317 ~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~--~~~~~~~~~~t~g~Dd~l~~~~~~~~ 394 (603)
T KOG0318|consen 317 SGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKG--MAASESGELFTIGWDDTLRVISLKDN 394 (603)
T ss_pred cccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEE--EeecCCCcEEEEecCCeEEEEecccC
Confidence 77777777888888899999999999999999 666431101 111111111 11333478999999999999987554
Q ss_pred ceeeE--EecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecCcccccccccccceeeeeeeccCCcc
Q 002615 790 NLLWE--YSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDI 867 (900)
Q Consensus 790 ~~~w~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 867 (900)
...-. .+++....... +. ..++.+.+.+.+ .|.++.-.++ .....+ ..
T Consensus 395 ~~t~~~~~~lg~QP~~la-v~-----------~d~~~avv~~~~-~iv~l~~~~~---------------~~~~~~--~y 444 (603)
T KOG0318|consen 395 GYTKSEVVKLGSQPKGLA-VL-----------SDGGTAVVACIS-DIVLLQDQTK---------------VSSIPI--GY 444 (603)
T ss_pred cccccceeecCCCceeEE-Ec-----------CCCCEEEEEecC-cEEEEecCCc---------------ceeecc--cc
Confidence 33211 23333322111 11 114455555544 4777754422 111111 11
Q ss_pred ccCc-ee--eCCEEEEeeeCCeEEEEEcccccccc
Q 002615 868 FSSP-VM--IGGRVFVGCRDDYIYCIALETQHLEE 899 (900)
Q Consensus 868 ~ss~-~~--~~~~l~vg~~dg~l~~ld~~tg~~~~ 899 (900)
.++. ++ .+..+.+|..|+.|+.|.+..+.+.+
T Consensus 445 ~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~e 479 (603)
T KOG0318|consen 445 ESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKE 479 (603)
T ss_pred ccceEEEcCCCCEEEEecccceEEEEEecCCcccc
Confidence 1111 12 46899999999999999998777544
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-11 Score=115.84 Aligned_cols=269 Identities=12% Similarity=0.071 Sum_probs=188.8
Q ss_pred ceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCC----e--EEE
Q 002615 592 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY----R--CVY 665 (900)
Q Consensus 592 ~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g----~--~~w 665 (900)
+.-++.|...|+.++.||.|..||..|.....-++.+...+...++.+.++.|.+|+-|+....|+.++. . ...
T Consensus 60 ~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r 139 (343)
T KOG0286|consen 60 AMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSR 139 (343)
T ss_pred eeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeee
Confidence 3445566778999999999999999998877777777777777788999999999999988777777643 2 222
Q ss_pred eeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeee-CCCEEEEEeecCcEEEEC-
Q 002615 666 KLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITS-ANRHVICCLVDGHVVALD- 743 (900)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~-~~~~i~~~~~~g~v~~~d- 743 (900)
.+..+....++..+.+ ++.|+.++.+.+...||+++ |+..-.+..+.....+..+.+ +.+.++.|+.|.....||
T Consensus 140 ~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~--g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~ 216 (343)
T KOG0286|consen 140 ELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIET--GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDV 216 (343)
T ss_pred eecCccceeEEEEEcC-CCceEecCCCceEEEEEccc--ceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeec
Confidence 2333444555554444 68899999999999999998 988888877766666666666 567778888899999999
Q ss_pred CCCCEEeeecCCCceecccccccc-CCCeEEEEeeCCeEEEEeCCCCceeeEEecCCc---eeccccccccccccccccc
Q 002615 744 SSGSIIWRCRTGGPIFAGPCTSFA-LPSQVLICSRNGSIYSFEQESGNLLWEYSVGDP---ITASAYIDEHLQLKLESCL 819 (900)
Q Consensus 744 ~~G~~~w~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~---~~~~~~~~~~~~~~~~~~~ 819 (900)
..|..+-.+.....-..+ +.+. .+..+..|+.|+....||....+.+-.|..... +.+..| .
T Consensus 217 R~~~c~qtF~ghesDINs--v~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~F------------S 282 (343)
T KOG0286|consen 217 RSGQCVQTFEGHESDINS--VRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAF------------S 282 (343)
T ss_pred cCcceeEeecccccccce--EEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEE------------c
Confidence 888776555533221111 1122 244577789999999999998887766653332 222222 2
Q ss_pred CCCeEEEEEcCCCcEEEEEeecCcccccccccccceeeeeeeccCCccccCcee--eCCEEEEeeeCCeEEEE
Q 002615 820 SIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCI 890 (900)
Q Consensus 820 ~~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~--~~~~l~vg~~dg~l~~l 890 (900)
.+++++++|..|.++++||.-.+ +......-+.+-++..-+ ++-.|-.|++|..|.+|
T Consensus 283 ~SGRlLfagy~d~~c~vWDtlk~-------------e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 283 KSGRLLFAGYDDFTCNVWDTLKG-------------ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred ccccEEEeeecCCceeEeecccc-------------ceEEEeeccCCeeEEEEECCCCcEEEecchhHheeec
Confidence 34999999999999999998654 333333334444554444 34456678888877776
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.7e-12 Score=118.23 Aligned_cols=262 Identities=12% Similarity=0.120 Sum_probs=182.7
Q ss_pred ccccccccccccccc-------eEEeeCCceEEEEecCCCeEEEEECCCCcE--EEEEecCCceeeceeEecCCCEEEEE
Q 002615 535 ELWKVHMESCVDASP-------LVVLKDSDIYLFVGSHSHKFICADAKRSSV--LWEIKLEGRIECSAAVLADFSQVVVG 605 (900)
Q Consensus 535 ~~W~~~~~~~v~~sp-------~v~~~~~~~~v~igs~~g~l~~~d~~tG~~--~w~~~~~~~~~~~~~~~~~~~~i~vg 605 (900)
.+|...+|.|...-+ .+....++..|.++.+.+ |..||..+++. +-.+..+.....++.+..+|..+|.|
T Consensus 23 RfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTg 101 (311)
T KOG0315|consen 23 RFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTG 101 (311)
T ss_pred eeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCe-eEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEec
Confidence 459999999964321 122334566777777776 99999998875 55677775555678888899999999
Q ss_pred eeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeecc-CCccccCceeeccCC
Q 002615 606 CYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC-GGSIFGSPAIDEVHD 684 (900)
Q Consensus 606 ~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~-~~~~~~~~~~~~~~~ 684 (900)
+.||.+..||..+-.....++....+. ..+..+...-+++|..+|+|.+||+.+..+....-. ......+..+..++.
T Consensus 102 seDgt~kIWdlR~~~~qR~~~~~spVn-~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgs 180 (311)
T KOG0315|consen 102 SEDGTVKIWDLRSLSCQRNYQHNSPVN-TVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGS 180 (311)
T ss_pred CCCceEEEEeccCcccchhccCCCCcc-eEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCc
Confidence 999999999998865555566554444 345666777899999999999999987655544322 234455666777678
Q ss_pred EEEEEeCCCcEEEEEcCCCCc----eeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEECCCCCEEeeec-CCCcee
Q 002615 685 VLYVASTSGRLTAISVKALPF----HTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCR-TGGPIF 759 (900)
Q Consensus 685 ~l~v~t~~g~l~~~~~~~~~g----~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d~~G~~~w~~~-~~~~~~ 759 (900)
.+..++..|.+|+|++-+... +++-++..+........++++++++..++.|..+++|+.++-+.-+.. .++.-.
T Consensus 181 ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rW 260 (311)
T KOG0315|consen 181 MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRW 260 (311)
T ss_pred EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCce
Confidence 888889999999999765222 233344444444456667788899999999999999994333222222 122212
Q ss_pred ccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEEecC
Q 002615 760 AGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVG 798 (900)
Q Consensus 760 ~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~ 798 (900)
.=.|.....+..|+.++.|+.+..|+...|+.+-.++-+
T Consensus 261 vWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 261 VWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred EEeeeeccCccEEEecCCCCceeecccccCceeeecCCc
Confidence 222333445668999999999999999999977665533
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.5e-12 Score=138.48 Aligned_cols=266 Identities=15% Similarity=0.111 Sum_probs=195.4
Q ss_pred CceEEEEecCCCeEEEEECCCCcEEEE-EecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeee
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWE-IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 634 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~~~w~-~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 634 (900)
.++++..|+.+..|..||..+|+..-. ...+..-..+..+...+++++.|+.|.++..||..+|+....+..+......
T Consensus 217 ~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~ 296 (537)
T KOG0274|consen 217 HDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRC 296 (537)
T ss_pred ecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEE
Confidence 378899999999999999999998765 4444332334444444678999999999999999999999888766655443
Q ss_pred eeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecC
Q 002615 635 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE 714 (900)
Q Consensus 635 ~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~ 714 (900)
... ....+..|+.|.+|++|+..+|.++.....+.....+..+. ++.++.|+.+|.|..|++.+ ++.+.....+
T Consensus 297 ~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~--~~cl~sl~gH 370 (537)
T KOG0274|consen 297 LTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT--GKCLKSLSGH 370 (537)
T ss_pred EEc--cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhh--ceeeeeecCC
Confidence 332 34667778999999999999999998876433333333333 58999999999999999997 9998887776
Q ss_pred CcceeeeeeeeCC-CEEEEEeecCcEEEEC-CCC-CEEeeecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCce
Q 002615 715 VPAFASLCITSAN-RHVICCLVDGHVVALD-SSG-SIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNL 791 (900)
Q Consensus 715 ~~~~~s~~~~~~~-~~i~~~~~~g~v~~~d-~~G-~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~ 791 (900)
.....+. ..+. ..++.|+.|+.|.++| .++ +.+..+.......... ...+..+..++.||.|..||.++|+.
T Consensus 371 ~~~V~sl--~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l---~~~~~~Lvs~~aD~~Ik~WD~~~~~~ 445 (537)
T KOG0274|consen 371 TGRVYSL--IVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL---LLRDNFLVSSSADGTIKLWDAEEGEC 445 (537)
T ss_pred cceEEEE--EecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccccc---ccccceeEeccccccEEEeecccCce
Confidence 5544343 3344 8999999999999999 777 5655554433333221 33456788889999999999999999
Q ss_pred eeEEecC--CceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecCcccc
Q 002615 792 LWEYSVG--DPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGK 846 (900)
Q Consensus 792 ~w~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~~~ 846 (900)
+-.+... ..+.+.. .....+++++.+|.+.+||..++....
T Consensus 446 ~~~~~~~~~~~v~~l~--------------~~~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 446 LRTLEGRHVGGVSALA--------------LGKEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred eeeeccCCcccEEEee--------------cCcceEEEEecCCeeEEEecccCchhh
Confidence 8877764 1221111 114678888999999999999885443
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-12 Score=126.17 Aligned_cols=277 Identities=15% Similarity=0.138 Sum_probs=189.8
Q ss_pred eceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccC
Q 002615 591 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG 670 (900)
Q Consensus 591 ~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~ 670 (900)
-+..+.+.+..+..|+.|+++-.||+.+|+++-+...+-+..-...++.-.-++|+++.|+.+.|||++..+++..+..+
T Consensus 155 r~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGH 234 (460)
T KOG0285|consen 155 RSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGH 234 (460)
T ss_pred EEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccc
Confidence 35666777677888999999999999999998776644444444455555678999999999999999998888766543
Q ss_pred CccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEE
Q 002615 671 GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSII 749 (900)
Q Consensus 671 ~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~ 749 (900)
-.-..+..+.+..+.|+.++.|..+..||..+ -..+.....+.....+..+.+.+..++.|+.|+.|..|| ..|+-.
T Consensus 235 lS~V~~L~lhPTldvl~t~grDst~RvWDiRt--r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~ 312 (460)
T KOG0285|consen 235 LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT--RASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM 312 (460)
T ss_pred cceeEEEeccccceeEEecCCcceEEEeeecc--cceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCcee
Confidence 22222333343357899999999999999998 556666665555556666666788999999999999999 888776
Q ss_pred eeecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEc
Q 002615 750 WRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICT 829 (900)
Q Consensus 750 w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 829 (900)
-....... +.-++..-.....++...-..+.+|+.-.|.++-.+..+..+..+..+.. ++.+++|+
T Consensus 313 ~tlt~hkk--svral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~ns------------D~v~~~G~ 378 (460)
T KOG0285|consen 313 ITLTHHKK--SVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNS------------DGVLVSGG 378 (460)
T ss_pred Eeeecccc--eeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeecc------------CceEEEcC
Confidence 54433221 11111111223445444444599999999988766555555555444443 89999999
Q ss_pred CCCcEEEEEeecCcccccccccccceeeeeeeccCCcc------ccCcee-eCCEEEEeeeCCeEEEEEcc
Q 002615 830 SSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDI------FSSPVM-IGGRVFVGCRDDYIYCIALE 893 (900)
Q Consensus 830 ~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~ss~~~-~~~~l~vg~~dg~l~~ld~~ 893 (900)
++|.++.||.++|...+. ......+|.+ +.+..- .+.+|+.|-.|..|..|...
T Consensus 379 dng~~~fwdwksg~nyQ~----------~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 379 DNGSIMFWDWKSGHNYQR----------GQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred CceEEEEEecCcCccccc----------ccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 999999999998743322 2222333332 222211 35688888888888888643
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.1e-12 Score=139.77 Aligned_cols=273 Identities=17% Similarity=0.158 Sum_probs=200.1
Q ss_pred eeCCceEEEEecCCCeEEEEECCCCc--EEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEEC-CCCcEEEEEecCC
Q 002615 553 LKDSDIYLFVGSHSHKFICADAKRSS--VLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDY-LTGDIYWTFQTCG 629 (900)
Q Consensus 553 ~~~~~~~v~igs~~g~l~~~d~~tG~--~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~-~tG~~~w~~~~~~ 629 (900)
+...+..+..++.++.+..|+..+++ .+-....+........+++++.+++.++.|+.|+.||. ..+..+.++..+.
T Consensus 167 fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~ 246 (456)
T KOG0266|consen 167 FSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHS 246 (456)
T ss_pred EcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCC
Confidence 44456678888899999999997777 44444445556667889999999999999999999999 5668888888777
Q ss_pred ceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceee-
Q 002615 630 EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTL- 708 (900)
Q Consensus 630 ~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~- 708 (900)
..+.+..+.+.++.|+.|+.|+.++.||.++|+++-++..+....+...+..++..++.++.+|.+..||..+ |...
T Consensus 247 ~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~--~~~~~ 324 (456)
T KOG0266|consen 247 TYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLET--GSKLC 324 (456)
T ss_pred CceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCC--Cceee
Confidence 7777778888778999999999999999999999999988887777788888888999999999999999988 6632
Q ss_pred -eEeecCC-c-ceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCCc-e--eccccccccCCCeEEEEeeCCeE
Q 002615 709 -WLHELEV-P-AFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP-I--FAGPCTSFALPSQVLICSRNGSI 781 (900)
Q Consensus 709 -w~~~~~~-~-~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~-~--~~~~~~~~~~~~~l~~g~~dg~l 781 (900)
-...... + .........++.++++++.++.+..|| ..+..+-.+..... . ...+ +....+..++.|+.|+.|
T Consensus 325 ~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~sg~~d~~v 403 (456)
T KOG0266|consen 325 LKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSP-TLSTGGKLIYSGSEDGSV 403 (456)
T ss_pred eecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecc-cccCCCCeEEEEeCCceE
Confidence 2221111 1 345666778889999999999999999 76766543332111 1 1111 112234578999999999
Q ss_pred EEEeCCCCceeeEEecC-CceecccccccccccccccccCCCeEEEEEc--CCCcEEEEEe
Q 002615 782 YSFEQESGNLLWEYSVG-DPITASAYIDEHLQLKLESCLSIDRLVCICT--SSGSIHILRV 839 (900)
Q Consensus 782 ~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~--~~G~v~~~d~ 839 (900)
++||..++..+-.+..+ ........ .....+.+..++ .|+.+.+|..
T Consensus 404 ~~~~~~s~~~~~~l~~h~~~~~~~~~-----------~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 404 YVWDSSSGGILQRLEGHSKAAVSDLS-----------SHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred EEEeCCccchhhhhcCCCCCceeccc-----------cCCCcCeeeecCcCCCceEEEecC
Confidence 99999998777665544 22211111 223366777776 5777888754
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-10 Score=120.73 Aligned_cols=318 Identities=12% Similarity=0.083 Sum_probs=200.3
Q ss_pred ccccccccceEEeeCCceEEEEecCCCeEEEEECCCCcEEEEEec---CCceeeceeEecCCCEEEEEeeCCEEEEEECC
Q 002615 541 MESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKL---EGRIECSAAVLADFSQVVVGCYKGKIYFLDYL 617 (900)
Q Consensus 541 ~~~~v~~sp~v~~~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~---~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~ 617 (900)
+-.||..+| ++.+....+.||.+++||.+||+.+-++.- +..-......++|..++...+.|..+..||..
T Consensus 192 FV~~VRysP------DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs 265 (603)
T KOG0318|consen 192 FVNCVRYSP------DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVS 265 (603)
T ss_pred ceeeEEECC------CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEee
Confidence 345666666 355555666799999999999999888762 22223367788999999999999999999999
Q ss_pred CCcEEEEEecCCcee--eeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcE
Q 002615 618 TGDIYWTFQTCGEVK--CQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRL 695 (900)
Q Consensus 618 tG~~~w~~~~~~~~~--~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l 695 (900)
++++..++..+..+. ..-++-. ++.|++-+.+|.|..+++.++.+...+..+...+.+..+.+++..||.|+.+|.+
T Consensus 266 ~~slv~t~~~~~~v~dqqvG~lWq-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I 344 (603)
T KOG0318|consen 266 TNSLVSTWPMGSTVEDQQVGCLWQ-KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHI 344 (603)
T ss_pred ccceEEEeecCCchhceEEEEEEe-CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceE
Confidence 999887776655421 1122232 5678888889999999999999877777776667777777778899999999999
Q ss_pred EEEEcCCCCceeeeEe-ecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-C-CCCEEe-eecCCCceeccccccccCCC-
Q 002615 696 TAISVKALPFHTLWLH-ELEVPAFASLCITSANRHVICCLVDGHVVALD-S-SGSIIW-RCRTGGPIFAGPCTSFALPS- 770 (900)
Q Consensus 696 ~~~~~~~~~g~~~w~~-~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~-~G~~~w-~~~~~~~~~~~~~~~~~~~~- 770 (900)
..|+..+ |..--.. +.+...+.. ......+.++..++|..+..++ . +|--.. .++.+.... ++....++
T Consensus 345 ~~W~~~~--g~~~~~~g~~h~nqI~~-~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~---~lav~~d~~ 418 (603)
T KOG0318|consen 345 NSWDSGS--GTSDRLAGKGHTNQIKG-MAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPK---GLAVLSDGG 418 (603)
T ss_pred EEEecCC--ccccccccccccceEEE-EeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCce---eEEEcCCCC
Confidence 9999776 4322111 112221111 1222347888889999998887 3 221100 012222111 11233343
Q ss_pred eEEEEeeCCeEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecCcccccccc
Q 002615 771 QVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQS 850 (900)
Q Consensus 771 ~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~ 850 (900)
.+++.+.++ |..+.-.++- .+.+..-...+.+ ..+++..+++|..||+|++|....+...
T Consensus 419 ~avv~~~~~-iv~l~~~~~~--~~~~~~y~~s~vA------------v~~~~~~vaVGG~Dgkvhvysl~g~~l~----- 478 (603)
T KOG0318|consen 419 TAVVACISD-IVLLQDQTKV--SSIPIGYESSAVA------------VSPDGSEVAVGGQDGKVHVYSLSGDELK----- 478 (603)
T ss_pred EEEEEecCc-EEEEecCCcc--eeeccccccceEE------------EcCCCCEEEEecccceEEEEEecCCccc-----
Confidence 555555544 6666533332 2222221111111 1234889999999999999998865221
Q ss_pred cccceeeeeeeccCCccccCcee--eCCEEEEeeeCCeEEEEEcccccc
Q 002615 851 KDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCIALETQHL 897 (900)
Q Consensus 851 ~~~~~~~~~~~~l~~~~~ss~~~--~~~~l~vg~~dg~l~~ld~~tg~~ 897 (900)
.+....+..+.+ +...+ ++.+|..|...+.+..||..+.+.
T Consensus 479 -----ee~~~~~h~a~i-T~vaySpd~~yla~~Da~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 479 -----EEAKLLEHRAAI-TDVAYSPDGAYLAAGDASRKVVLYDVASREV 521 (603)
T ss_pred -----ceeeeecccCCc-eEEEECCCCcEEEEeccCCcEEEEEcccCce
Confidence 111112222221 21222 456777778889999999888765
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.1e-11 Score=125.67 Aligned_cols=193 Identities=13% Similarity=0.132 Sum_probs=150.2
Q ss_pred CceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCC--ceee
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG--EVKC 633 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~--~~~~ 633 (900)
+++++|..+-+|.|.-||+.+++.+..+...+....++++.+.+..+.+||.||.++.++...+++.......- .-.-
T Consensus 79 e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL 158 (691)
T KOG2048|consen 79 EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL 158 (691)
T ss_pred cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence 58899999999999999999999998888777667788888888899999999999999999998877654432 2223
Q ss_pred eeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeecc--C------Cc-cccCceeeccCCEEEEEeCCCcEEEEEcCCCC
Q 002615 634 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC--G------GS-IFGSPAIDEVHDVLYVASTSGRLTAISVKALP 704 (900)
Q Consensus 634 ~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~--~------~~-~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~ 704 (900)
+..+.+++..|+.|+.||.|.+||.+++..+...+. . .. +++-..+. .+.|..|...|.+.-||...
T Consensus 159 slsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~-- 234 (691)
T KOG2048|consen 159 SLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIF-- 234 (691)
T ss_pred EEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceEEEEcccC--
Confidence 344555555699999999999999999988773222 1 11 23333343 48899999999999999888
Q ss_pred ceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeee
Q 002615 705 FHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRC 752 (900)
Q Consensus 705 g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~ 752 (900)
|..+..+..+.....+.+...+++++++++.|+.+.-|. .+++--|..
T Consensus 235 gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~ 283 (691)
T KOG2048|consen 235 GTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVI 283 (691)
T ss_pred cchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceee
Confidence 888888877776667777777889999999999999998 433223644
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.1e-13 Score=134.76 Aligned_cols=270 Identities=11% Similarity=0.076 Sum_probs=180.8
Q ss_pred CCCEEEEEeeCCEEEEEECCC-CcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccC
Q 002615 598 DFSQVVVGCYKGKIYFLDYLT-GDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGS 676 (900)
Q Consensus 598 ~~~~i~vg~~dg~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~ 676 (900)
.+..+..++.|+.|+.||.-+ ++.+-+|..+...+....+...+..+.++++|+.+..||.+||+++-++..+......
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cv 305 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCV 305 (503)
T ss_pred eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceee
Confidence 444677788999999999876 8888888887766666677777788999999999999999999999999876544332
Q ss_pred ceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCC
Q 002615 677 PAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG 755 (900)
Q Consensus 677 ~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~ 755 (900)
-.-.++.+.+++|+.++.|..||.++ |+++..+..+.....+..+...+.+.+..+.++.+.+|+ ..+-.+ ++...
T Consensus 306 kf~pd~~n~fl~G~sd~ki~~wDiRs--~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~i-k~i~~ 382 (503)
T KOG0282|consen 306 KFHPDNQNIFLVGGSDKKIRQWDIRS--GKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPI-KNIAD 382 (503)
T ss_pred ecCCCCCcEEEEecCCCcEEEEeccc--hHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccc-hhhcc
Confidence 22222247889999999999999998 998888777666666777777788888888888888887 444332 22223
Q ss_pred CceeccccccccCCCeEE-EEeeCCeEEEEeCCCCceeeEEe-c-CCceecccccccccccccccccCCCeEEEEEcCCC
Q 002615 756 GPIFAGPCTSFALPSQVL-ICSRNGSIYSFEQESGNLLWEYS-V-GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSG 832 (900)
Q Consensus 756 ~~~~~~~~~~~~~~~~l~-~g~~dg~l~~~d~~tG~~~w~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G 832 (900)
....+.||+....++..+ .-+.|+.+++|....--..-..+ . +..+...++- -...+++++|+.|..+|
T Consensus 383 ~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~--------v~fSpDG~~l~SGdsdG 454 (503)
T KOG0282|consen 383 PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQ--------VDFSPDGRTLCSGDSDG 454 (503)
T ss_pred hhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceee--------EEEcCCCCeEEeecCCc
Confidence 334566665544444444 44778889998743211111100 0 1111000100 11244599999999999
Q ss_pred cEEEEEeecCcccccccccccceeeeeeeccCCccccCceee---CCEEEEeeeCCeEEEEE
Q 002615 833 SIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMI---GGRVFVGCRDDYIYCIA 891 (900)
Q Consensus 833 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~~---~~~l~vg~~dg~l~~ld 891 (900)
.++.||.++- +++...+.+.........+ ...|..++.+|.|+.||
T Consensus 455 ~v~~wdwkt~-------------kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 455 KVNFWDWKTT-------------KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cEEEeechhh-------------hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999998754 3333333332222211111 36788888999999885
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-12 Score=133.11 Aligned_cols=268 Identities=10% Similarity=0.048 Sum_probs=182.0
Q ss_pred CceEEEEecCCCeEEEEECCC-CcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeee
Q 002615 556 SDIYLFVGSHSHKFICADAKR-SSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 634 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 634 (900)
....+..++.|+.|+.||..+ ++++..+..+......+.++.++..+..+++|+.|..||.+||+.+-++..+....+.
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cv 305 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCV 305 (503)
T ss_pred eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceee
Confidence 356678889999999999877 8888888877776667889999999999999999999999999999998876554443
Q ss_pred eeEeCCC-CEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeec
Q 002615 635 PVVDAPR-QLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 713 (900)
Q Consensus 635 ~~~~~~~-~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 713 (900)
. +.+++ +.+++|..|+.|..||..+|+++..+.-+-..+....+-+.+.+.+..+.++.+.+|+... .-.+... .
T Consensus 306 k-f~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~--~v~ik~i-~ 381 (503)
T KOG0282|consen 306 K-FHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRI--PVPIKNI-A 381 (503)
T ss_pred e-cCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCC--Cccchhh-c
Confidence 3 33444 7788999999999999999998877765433344444555466777778888888888664 3222211 1
Q ss_pred CCcceeee--eeeeCCCEEEEEeecCcEEEEC-CCCCEEeeec-CCCce---eccccccccCCCeEEEEeeCCeEEEEeC
Q 002615 714 EVPAFASL--CITSANRHVICCLVDGHVVALD-SSGSIIWRCR-TGGPI---FAGPCTSFALPSQVLICSRNGSIYSFEQ 786 (900)
Q Consensus 714 ~~~~~~s~--~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~-~~~~~---~~~~~~~~~~~~~l~~g~~dg~l~~~d~ 786 (900)
....++.+ ...+.++.+.+-+.++.+++|. ..--.+-..+ ..+.. ++..+-...+++.|..|+.+|.++.||-
T Consensus 382 ~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdw 461 (503)
T KOG0282|consen 382 DPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDW 461 (503)
T ss_pred chhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeec
Confidence 11112222 3344566666667788888886 2111110000 01111 1111112234668999999999999999
Q ss_pred CCCceeeEEecCCce-ecccccccccccccccccCCCeEEEEEcCCCcEEEEE
Q 002615 787 ESGNLLWEYSVGDPI-TASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILR 838 (900)
Q Consensus 787 ~tG~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d 838 (900)
++-++.-+.+.+... +...+... ....+++|+.+|.|.+|+
T Consensus 462 kt~kl~~~lkah~~~ci~v~wHP~-----------e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 462 KTTKLVSKLKAHDQPCIGVDWHPV-----------EPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhhhhhhccccCCcceEEEEecCC-----------CcceeEecccCceeEecC
Confidence 998887777666433 33222221 156788888999999985
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.5e-10 Score=120.56 Aligned_cols=265 Identities=12% Similarity=0.125 Sum_probs=168.2
Q ss_pred EEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEE-EeeCCEEEEEECCCCcEEEEEecCCceeeeeeEe
Q 002615 560 LFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVV-GCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVD 638 (900)
Q Consensus 560 v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~v-g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~ 638 (900)
++.++.++.++.||..+++.+..+..+..+ .+..+++++..+|+ ++.++.|+.||..+|+....+..+... ....+.
T Consensus 4 ~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~-~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~ 81 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLEVTRTFPVGQRP-RGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP-ELFALH 81 (300)
T ss_pred EEEecCCCEEEEEECCCCceEEEEECCCCC-CceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc-cEEEEC
Confidence 345667899999999999988877765543 35677888877765 456789999999999887666544333 234566
Q ss_pred CCCCEEEEec-CCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCC-cEEEEEcCCCCceeeeEeecCCc
Q 002615 639 APRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSG-RLTAISVKALPFHTLWLHELEVP 716 (900)
Q Consensus 639 ~~~~~i~~gs-~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g-~l~~~~~~~~~g~~~w~~~~~~~ 716 (900)
++++.+|+++ .++.++.||..+++.+..+..+... ....+.+++..+++++.++ .++.+|.++ ++..........
T Consensus 82 ~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~dg~~l~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~ 158 (300)
T TIGR03866 82 PNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEP-EGMAVSPDGKIVVNTSETTNMAHFIDTKT--YEIVDNVLVDQR 158 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCc-ceEEECCCCCEEEEEecCCCeEEEEeCCC--CeEEEEEEcCCC
Confidence 6667777764 5789999999998887776543322 3345555566777776654 356678776 665544332222
Q ss_pred ceeeeeeeeCCCEEEEEe-ecCcEEEEC-CCCCEEeeecCCCce----eccc-ccccc-CCCeEEEE-eeCCeEEEEeCC
Q 002615 717 AFASLCITSANRHVICCL-VDGHVVALD-SSGSIIWRCRTGGPI----FAGP-CTSFA-LPSQVLIC-SRNGSIYSFEQE 787 (900)
Q Consensus 717 ~~~s~~~~~~~~~i~~~~-~~g~v~~~d-~~G~~~w~~~~~~~~----~~~~-~~~~~-~~~~l~~g-~~dg~l~~~d~~ 787 (900)
. ....+..++..+++++ .++.+..|| .+++.+-++....+. ...+ .+... .+..+|++ ..++.+..||.+
T Consensus 159 ~-~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 159 P-RFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred c-cEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence 1 2344556677776665 478999999 777765433211100 0001 11112 23455665 346679999999
Q ss_pred CCceeeEEecCCceecccccccccccccccccCCCeEEEEE-cCCCcEEEEEeecC
Q 002615 788 SGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCIC-TSSGSIHILRVNLD 842 (900)
Q Consensus 788 tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-~~~G~v~~~d~~~~ 842 (900)
++++.-....+..+.... + .+++..++++ ..+|.|.+||.+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~-~-----------~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 238 TYEVLDYLLVGQRVWQLA-F-----------TPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred CCcEEEEEEeCCCcceEE-E-----------CCCCCEEEEEcCCCCeEEEEECCCC
Confidence 988765443333322221 1 2236778876 45899999999876
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.1e-12 Score=126.80 Aligned_cols=269 Identities=8% Similarity=-0.015 Sum_probs=204.3
Q ss_pred CceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecC--CCEEEEEeeCCEEEEEECCCCcEEEEEecCCceee
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLAD--FSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 633 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~--~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 633 (900)
++..+..||.+|.+..|+..++..+-.+..+..-...+.+.+. +..+..++.||.+..|+..+-..+-.+..+..-++
T Consensus 186 ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs 265 (459)
T KOG0272|consen 186 DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVS 265 (459)
T ss_pred CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhhe
Confidence 5677888999999999999999888777777654455566654 44789999999999999877777777766666667
Q ss_pred eeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeec
Q 002615 634 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 713 (900)
Q Consensus 634 ~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 713 (900)
...+.+++..+.++++|.+-..||..++..+-....+..-..+.++..++..+..|+.|..=..||+.+ |..+-....
T Consensus 266 ~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt--gr~im~L~g 343 (459)
T KOG0272|consen 266 RVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT--GRCIMFLAG 343 (459)
T ss_pred eeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeeccc--CcEEEEecc
Confidence 778899999999999999999999999887765555555556666777666777777888778899998 988888777
Q ss_pred CCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCcee
Q 002615 714 EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLL 792 (900)
Q Consensus 714 ~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~ 792 (900)
+...+.+..+.+.+-.+..|+.|+.+.+|| ..-..+++++...++.+..+.....+..|..+++|+.+..|...+.+++
T Consensus 344 H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ 423 (459)
T KOG0272|consen 344 HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL 423 (459)
T ss_pred cccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccc
Confidence 777677888888877888999999999999 6555667766555544443333334557888899999999999988877
Q ss_pred eEEecCCc-eecccccccccccccccccCCCeEEEEEcCCCcEEEEE
Q 002615 793 WEYSVGDP-ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILR 838 (900)
Q Consensus 793 w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d 838 (900)
-+..-+.. +.+.-+.. ++..++.++.|.++..|.
T Consensus 424 ksLaGHe~kV~s~Dis~------------d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 424 KSLAGHEGKVISLDISP------------DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hhhcCCccceEEEEecc------------CCceEEEeccCceeeecc
Confidence 66544433 33322222 267788888888888774
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-10 Score=139.80 Aligned_cols=282 Identities=10% Similarity=0.049 Sum_probs=174.6
Q ss_pred eeCCceEEEEecCCCeEEEEECCCC----c----EEEEEecCCceeeceeEec-CCCEEEEEeeCCEEEEEECCCCcEEE
Q 002615 553 LKDSDIYLFVGSHSHKFICADAKRS----S----VLWEIKLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDIYW 623 (900)
Q Consensus 553 ~~~~~~~v~igs~~g~l~~~d~~tG----~----~~w~~~~~~~~~~~~~~~~-~~~~i~vg~~dg~l~~~d~~tG~~~w 623 (900)
+..++..+.+|+.|+.|+.||..+. . ..........+ .+.++.+ .+..+++++.||.|..||..+++.+.
T Consensus 491 fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v-~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~ 569 (793)
T PLN00181 491 FDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKL-SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVT 569 (793)
T ss_pred ECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCce-eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence 3345677889999999999997542 1 11111212222 2334443 35688999999999999999999888
Q ss_pred EEecCCceeeeeeEeC-CCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCC
Q 002615 624 TFQTCGEVKCQPVVDA-PRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKA 702 (900)
Q Consensus 624 ~~~~~~~~~~~~~~~~-~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~ 702 (900)
.+..+........+.+ ++..+++|+.|+.+..||..++.++..+.....+.+.....+.+..+.+|+.+|.++.||..+
T Consensus 570 ~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~ 649 (793)
T PLN00181 570 EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRN 649 (793)
T ss_pred EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence 7766655455555653 456789999999999999999888766654433332222233457889999999999999876
Q ss_pred CCce-eeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCC------CEEeeecCCCceeccccccccCCCeEEE
Q 002615 703 LPFH-TLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSG------SIIWRCRTGGPIFAGPCTSFALPSQVLI 774 (900)
Q Consensus 703 ~~g~-~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G------~~~w~~~~~~~~~~~~~~~~~~~~~l~~ 774 (900)
++ .+.....+........+. ++..+++++.|+.+..|| ..+ +.+..+........... ....++.|.+
T Consensus 650 --~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~-~s~~~~~las 725 (793)
T PLN00181 650 --PKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG-LSVSDGYIAT 725 (793)
T ss_pred --CCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE-EcCCCCEEEE
Confidence 43 233333333333344443 567889999999999999 532 33333332111111000 1123567888
Q ss_pred EeeCCeEEEEeCCCCceeeEEecCCc--eecccccccccccccccccCCCeEEEEEcCCCcEEEEEe
Q 002615 775 CSRNGSIYSFEQESGNLLWEYSVGDP--ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 839 (900)
Q Consensus 775 g~~dg~l~~~d~~tG~~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~ 839 (900)
|+.||.++.|+...+...|.+..... ............+........+..+++|+.+|.|.+|+.
T Consensus 726 gs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 726 GSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 99999999999888877765543211 100000000000000111234778999999999999974
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-11 Score=135.37 Aligned_cols=265 Identities=14% Similarity=0.104 Sum_probs=188.8
Q ss_pred CCEEEEEeeCCEEEEEECCCCcEEEE-EecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCc
Q 002615 599 FSQVVVGCYKGKIYFLDYLTGDIYWT-FQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSP 677 (900)
Q Consensus 599 ~~~i~vg~~dg~l~~~d~~tG~~~w~-~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~ 677 (900)
++++..|+.+..|..||..+|..+-. +..+........+...+++++.|+.|.++..||..+|++...+..+.......
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~ 297 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCL 297 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEE
Confidence 45799999999999999999988766 55444433334444346889999999999999999999999887655544444
Q ss_pred eeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCC
Q 002615 678 AIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG 756 (900)
Q Consensus 678 ~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~ 756 (900)
.+.+ ..+..|+.|..+.+|+..+ +..+-....+..... ++..+++.+++|+.|+.|.+|| .+++.+...+...
T Consensus 298 ~~~~--~~~~sgs~D~tVkVW~v~n--~~~l~l~~~h~~~V~--~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~ 371 (537)
T KOG0274|consen 298 TIDP--FLLVSGSRDNTVKVWDVTN--GACLNLLRGHTGPVN--CVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT 371 (537)
T ss_pred EccC--ceEeeccCCceEEEEeccC--cceEEEeccccccEE--EEEecCCEEEEEecCceEEEEEhhhceeeeeecCCc
Confidence 3332 5666678999999999998 877766654332222 3334588999999999999999 8899887765422
Q ss_pred -ceeccccccccCCCeEEEEeeCCeEEEEeCCCC-ceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcE
Q 002615 757 -PIFAGPCTSFALPSQVLICSRNGSIYSFEQESG-NLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSI 834 (900)
Q Consensus 757 -~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v 834 (900)
.+.+. .....+.++.|+.|+.|..||..++ +.+-.+..+....... ...+..+..++.||.|
T Consensus 372 ~~V~sl---~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l-------------~~~~~~Lvs~~aD~~I 435 (537)
T KOG0274|consen 372 GRVYSL---IVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL-------------LLRDNFLVSSSADGTI 435 (537)
T ss_pred ceEEEE---EecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccccc-------------ccccceeEeccccccE
Confidence 22222 1222278999999999999999998 6666665554443221 2227888999999999
Q ss_pred EEEEeecCcccccccccccceeeeeeeccC-CccccCceeeCCEEEEeeeCCeEEEEEccccccc
Q 002615 835 HILRVNLDVTGKENQSKDHMVQEFAKLELQ-GDIFSSPVMIGGRVFVGCRDDYIYCIALETQHLE 898 (900)
Q Consensus 835 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~ss~~~~~~~l~vg~~dg~l~~ld~~tg~~~ 898 (900)
.+||..++ +....++-+ -..++.....+..++.++.++.++.||+.++++.
T Consensus 436 k~WD~~~~-------------~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 436 KLWDAEEG-------------ECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred EEeecccC-------------ceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchh
Confidence 99999876 333333321 1122222222578999999999999999998864
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-12 Score=126.02 Aligned_cols=237 Identities=14% Similarity=0.177 Sum_probs=176.3
Q ss_pred ceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEe--cC------CceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeE
Q 002615 592 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQ--TC------GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRC 663 (900)
Q Consensus 592 ~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~--~~------~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~ 663 (900)
++.+++|+++++.|+.||.|-+||..+|++....+ .. +...-+..++.+...+..|+.||.+..|...+|.|
T Consensus 218 cA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~C 297 (508)
T KOG0275|consen 218 CARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQC 297 (508)
T ss_pred heeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchH
Confidence 67899999999999999999999999999865322 21 12223344555677889999999999999999999
Q ss_pred EEeec-cCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEE
Q 002615 664 VYKLP-CGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVAL 742 (900)
Q Consensus 664 ~w~~~-~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~ 742 (900)
+.+++ .+..-..+..++.++..++.++.+..+..--+++ |+.+..+..+........+..++..++.++.||.+.+|
T Consensus 298 lRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS--GK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW 375 (508)
T KOG0275|consen 298 LRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS--GKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVW 375 (508)
T ss_pred HHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc--chhHHHhcCccccccceEEcCCCCeEEEecCCccEEEe
Confidence 99886 3433444555666667888899998888877777 99888777766655566677888999999999999999
Q ss_pred C-CCCCEEeeecCCCceeccccc--cccCCCeEEEEeeCCeEEEEeCCCCceeeEEecCCc----eeccccccccccccc
Q 002615 743 D-SSGSIIWRCRTGGPIFAGPCT--SFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDP----ITASAYIDEHLQLKL 815 (900)
Q Consensus 743 d-~~G~~~w~~~~~~~~~~~~~~--~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~----~~~~~~~~~~~~~~~ 815 (900)
+ ++++.+-+++..+.-+....+ .......++++...+++|..+. .|+++.++..+.. .....
T Consensus 376 ~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~---------- 444 (508)
T KOG0275|consen 376 HGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAI---------- 444 (508)
T ss_pred cCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEE----------
Confidence 9 888887776654432222211 1223456888888899999995 5888887765432 22221
Q ss_pred ccccCCCeEEEEEcCCCcEEEEEeecCc
Q 002615 816 ESCLSIDRLVCICTSSGSIHILRVNLDV 843 (900)
Q Consensus 816 ~~~~~~~~~l~~g~~~G~v~~~d~~~~~ 843 (900)
..+.+.++|+..+|+.+|+|...+|.
T Consensus 445 --lSpkGewiYcigED~vlYCF~~~sG~ 470 (508)
T KOG0275|consen 445 --LSPKGEWIYCIGEDGVLYCFSVLSGK 470 (508)
T ss_pred --ecCCCcEEEEEccCcEEEEEEeecCc
Confidence 22348999999999999999998773
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.5e-10 Score=110.13 Aligned_cols=242 Identities=14% Similarity=0.113 Sum_probs=169.4
Q ss_pred eeCCceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEee--CCEEEEEECCCCcEEEEEecCCc
Q 002615 553 LKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY--KGKIYFLDYLTGDIYWTFQTCGE 630 (900)
Q Consensus 553 ~~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~--dg~l~~~d~~tG~~~w~~~~~~~ 630 (900)
+++.+..+.+.++|..|..||..+|++.-.+....--...+++......+..++. |..|..+++.+.+.+-.|..+..
T Consensus 22 fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~ 101 (311)
T KOG1446|consen 22 FSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKK 101 (311)
T ss_pred ecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCc
Confidence 4456777777788889999999999998877655322234566655556666665 77899999999999999988888
Q ss_pred eeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEE-EeCCCcEEEEEcCCCCceeee
Q 002615 631 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYV-ASTSGRLTAISVKALPFHTLW 709 (900)
Q Consensus 631 ~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v-~t~~g~l~~~~~~~~~g~~~w 709 (900)
.+....+.+.+..++.++.|++++.||++..++.-.....+. ..+++++ .|.+++ +.....|..||.+.-...+.-
T Consensus 102 ~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~ 178 (311)
T KOG1446|consen 102 RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDP-EGLIFALANGSELIKLYDLRSFDKGPFT 178 (311)
T ss_pred eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECC-CCcEEEEecCCCeEEEEEecccCCCCce
Confidence 777777777778899999999999999987776655544333 2345666 344444 444447888998763333443
Q ss_pred EeecC---CcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCCceec--cccccccCCCeEEEEeeCCeEEE
Q 002615 710 LHELE---VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFA--GPCTSFALPSQVLICSRNGSIYS 783 (900)
Q Consensus 710 ~~~~~---~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~~~~--~~~~~~~~~~~l~~g~~dg~l~~ 783 (900)
.+... ........++++++.+.+++..+.++.+| -+|.++-.++....-.. ..+...-....|+.|+.||+|++
T Consensus 179 tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~v 258 (311)
T KOG1446|consen 179 TFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHV 258 (311)
T ss_pred eEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEE
Confidence 33333 22234556778899999999999999999 89998766653322111 11111223456788888899999
Q ss_pred EeCCCCceeeEEec
Q 002615 784 FEQESGNLLWEYSV 797 (900)
Q Consensus 784 ~d~~tG~~~w~~~~ 797 (900)
|+.++|+.+-....
T Consensus 259 w~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 259 WNLETGKKVAVLRG 272 (311)
T ss_pred EEcCCCcEeeEecC
Confidence 99999988755543
|
|
| >COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3e-11 Score=127.40 Aligned_cols=214 Identities=17% Similarity=0.303 Sum_probs=144.9
Q ss_pred ccccccccccccccc--c--------cccceEEeeCCceEEEEecCCCeEEEEECCCCcEEEEEecCCc--ee----ece
Q 002615 530 RGFIQELWKVHMESC--V--------DASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR--IE----CSA 593 (900)
Q Consensus 530 ~~~~~~~W~~~~~~~--v--------~~sp~v~~~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~--~~----~~~ 593 (900)
-..+++.|++++|.. - ..+|+.+ ++.+|+.+....++++|+.||+++|+++.... +. +|-
T Consensus 181 V~nL~~AWty~TGD~k~~~d~~e~t~e~tPLkv----gdtlYvcTphn~v~ALDa~TGkekWkydp~~~~nv~~~~~tCr 256 (773)
T COG4993 181 VGNLQVAWTYRTGDVKQPEDPGETTNEVTPLKV----GDTLYVCTPHNRVFALDAATGKEKWKYDPNLKSNVDPQHQTCR 256 (773)
T ss_pred hhccceeEEEecCcccCCCCcccccccccceEE----CCEEEEecCcceeEEeeccCCceeeecCCCCCCCccccccccc
Confidence 457889999998743 1 2378874 88999999888899999999999999864321 10 010
Q ss_pred ----------eEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCcee----------------eeeeEeCCCCEEEEe
Q 002615 594 ----------AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK----------------CQPVVDAPRQLIWCG 647 (900)
Q Consensus 594 ----------~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~----------------~~~~~~~~~~~i~~g 647 (900)
.-+++..+||..+.|..|.++|.+||++.|.|..++... +.+.+. ..+.|+.|
T Consensus 257 gVsy~~a~a~~k~pc~~rIflpt~DarlIALdA~tGkvc~~Fa~~Ga~~l~tgm~~~k~g~y~~tS~p~~~-~~~~v~~g 335 (773)
T COG4993 257 GVSYGAAKADAKSPCPRRIFLPTADARLIALDADTGKVCWSFANKGALNLETGMKDTKDGLYYGTSPPEFG-VKGIVIAG 335 (773)
T ss_pred ceecccccccccCCCceeEEeecCCceEEEEeCCCCcEeheeccCceeeeeccCCCCCCCeEeecCCCccc-ceeEEEee
Confidence 112344569999999999999999999999987655322 112222 22333333
Q ss_pred cC---------CCeEEEEECCCCeEEEeeccC------------------CccccCceeeccCCEEEEEeCC--------
Q 002615 648 SH---------DHNLYALDFRNYRCVYKLPCG------------------GSIFGSPAIDEVHDVLYVASTS-------- 692 (900)
Q Consensus 648 s~---------dg~l~~~d~~~g~~~w~~~~~------------------~~~~~~~~~~~~~~~l~v~t~~-------- 692 (900)
+- .+.+..+|..+|+.+|..+.+ .+.+++..++.+-+.+|++..+
T Consensus 336 ~v~Dn~st~e~sgVir~fdv~tG~l~w~~D~gnpD~t~p~~~g~tyt~nspn~W~~~SyD~~lnlVy~p~Gn~~pd~wg~ 415 (773)
T COG4993 336 SVADNESTWEPSGVIRGFDVLTGKLTWAGDPGNPDPTAPTAPGQTYTRNSPNSWASASYDAKLNLVYVPMGNQTPDTWGG 415 (773)
T ss_pred ccCCCceeeccCccccccccccCceEEccCCCCCCCCCCCCCCceeecCCCCcccccccCCCCCeEEEeCCCCChhhccC
Confidence 21 245778888999999987653 2456667777777889987532
Q ss_pred ----------CcEEEEEcCCCCceeeeEeecCCcce------eeee---eeeCCC---EEEEEeecCcEEEEC-CCCCEE
Q 002615 693 ----------GRLTAISVKALPFHTLWLHELEVPAF------ASLC---ITSANR---HVICCLVDGHVVALD-SSGSII 749 (900)
Q Consensus 693 ----------g~l~~~~~~~~~g~~~w~~~~~~~~~------~s~~---~~~~~~---~i~~~~~~g~v~~~d-~~G~~~ 749 (900)
..+.++|+++ |+..|.++.-.... .-+. +..++. -++..+.+|.+|++| .+|+++
T Consensus 416 trtp~dekysssivAlD~~T--G~~kW~yQtvhhDlWDmDvp~qp~L~D~~~DG~~vpalv~ptk~G~~YVlDRrtGe~l 493 (773)
T COG4993 416 TRTPGDEKYSSSIVALDATT--GKLKWVYQTVHHDLWDMDVPAQPTLLDITKDGKVVPALVHPTKNGFIYVLDRRTGELL 493 (773)
T ss_pred CCCcccccccceeEEecCCC--cceeeeeeccCcchhcccCCCCceEEEeecCCcEeeeeecccccCcEEEEEcCCCccc
Confidence 3588899998 99999887543211 1111 112222 245567789999999 899876
Q ss_pred e
Q 002615 750 W 750 (900)
Q Consensus 750 w 750 (900)
-
T Consensus 494 v 494 (773)
T COG4993 494 V 494 (773)
T ss_pred c
Confidence 3
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.3e-10 Score=109.15 Aligned_cols=265 Identities=12% Similarity=0.081 Sum_probs=180.6
Q ss_pred CCCEEEEEeeCCEEEEEEC-----CCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCc
Q 002615 598 DFSQVVVGCYKGKIYFLDY-----LTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS 672 (900)
Q Consensus 598 ~~~~i~vg~~dg~l~~~d~-----~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~ 672 (900)
+.+.++.++.|..+..|++ +.|.++..+..+.......++..+++..+.+++|+.+..||..+|+...++..+..
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~ 106 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTK 106 (315)
T ss_pred CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCC
Confidence 3345667777888888864 34667777777777777777787888999999999999999999999988888777
Q ss_pred cccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecC--CcceeeeeeeeC--CCEEEEEeecCcEEEEC-CCCC
Q 002615 673 IFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE--VPAFASLCITSA--NRHVICCLVDGHVVALD-SSGS 747 (900)
Q Consensus 673 ~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~--~~~~~s~~~~~~--~~~i~~~~~~g~v~~~d-~~G~ 747 (900)
..-+..++.++..|+.|+.|..+..||.. |....+.... ....+...+.+. +-.|+.++.|+.+-++| .+-+
T Consensus 107 dVlsva~s~dn~qivSGSrDkTiklwnt~---g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~ 183 (315)
T KOG0279|consen 107 DVLSVAFSTDNRQIVSGSRDKTIKLWNTL---GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ 183 (315)
T ss_pred ceEEEEecCCCceeecCCCcceeeeeeec---ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc
Confidence 77777888878889999999999999987 4555554433 344455555555 56788889999999999 6555
Q ss_pred EEeeecCCCceeccccccccCCC-eEEEEeeCCeEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEE
Q 002615 748 IIWRCRTGGPIFAGPCTSFALPS-QVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVC 826 (900)
Q Consensus 748 ~~w~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 826 (900)
+...+.......... ....|| .+..|..||.++.||...|+-+.++.....+.+..|.. +.+..
T Consensus 184 l~~~~~gh~~~v~t~--~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fsp-------------nrywL 248 (315)
T KOG0279|consen 184 LRTTFIGHSGYVNTV--TVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSP-------------NRYWL 248 (315)
T ss_pred hhhccccccccEEEE--EECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecC-------------CceeE
Confidence 544333222222111 122244 45557889999999999999887777666555444332 33333
Q ss_pred EEcCCCcEEEEEeecCcccccccccccceeeeeeeccCC--------cc-ccCcee--eCCEEEEeeeCCeEEEEEcc
Q 002615 827 ICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQG--------DI-FSSPVM--IGGRVFVGCRDDYIYCIALE 893 (900)
Q Consensus 827 ~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~-~ss~~~--~~~~l~vg~~dg~l~~ld~~ 893 (900)
++..+-.|.+||..++. .+..+++.. +. --+.+. ++..||.|-.|+.|..|...
T Consensus 249 ~~at~~sIkIwdl~~~~-------------~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 249 CAATATSIKIWDLESKA-------------VVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred eeccCCceEEEeccchh-------------hhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 33444559999998662 222222111 11 112222 36789999999999888653
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-11 Score=123.27 Aligned_cols=273 Identities=11% Similarity=0.028 Sum_probs=203.4
Q ss_pred eceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCC--CCEEEEecCCCeEEEEECCCCeEEEeec
Q 002615 591 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAP--RQLIWCGSHDHNLYALDFRNYRCVYKLP 668 (900)
Q Consensus 591 ~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~--~~~i~~gs~dg~l~~~d~~~g~~~w~~~ 668 (900)
..+.++.++..++.|+.+|.+..|+..++..+-++..+..-.....+.+. +..+.+++.||.+..|+..+-.++-.+.
T Consensus 179 s~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~ 258 (459)
T KOG0272|consen 179 SGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLE 258 (459)
T ss_pred eeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhh
Confidence 35667788889999999999999999999888888777665566666654 4578999999999999988877777777
Q ss_pred cCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCC
Q 002615 669 CGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGS 747 (900)
Q Consensus 669 ~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~ 747 (900)
.+..-.+...+.+++..|..++.|..-..||+.+ ++.+-..+.+.....+.++..++..+..|+.|..-.+|| .+|.
T Consensus 259 gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~t--k~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr 336 (459)
T KOG0272|consen 259 GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLET--KSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR 336 (459)
T ss_pred cchhhheeeeecCCCceeeecccccchhhccccc--chhhHhhcccccccceeEecCCCceeeccCccchhheeecccCc
Confidence 6666677788888888899999999999999998 776666666666667888888888888898888888999 8998
Q ss_pred EEeeecC-CCceeccccccccCCC-eEEEEeeCCeEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCeEE
Q 002615 748 IIWRCRT-GGPIFAGPCTSFALPS-QVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLV 825 (900)
Q Consensus 748 ~~w~~~~-~~~~~~~~~~~~~~~~-~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 825 (900)
.+-.+.. ..++++.. ...+| .|..|+.|+...+||...-+.+.++..+.+.++...+.. ..+.++
T Consensus 337 ~im~L~gH~k~I~~V~---fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p----------~~g~fL 403 (459)
T KOG0272|consen 337 CIMFLAGHIKEILSVA---FSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSP----------QEGYFL 403 (459)
T ss_pred EEEEecccccceeeEe---ECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecc----------cCCeEE
Confidence 7765543 33455544 33344 577788999999999988888888877777666554432 238899
Q ss_pred EEEcCCCcEEEEEeecCcccccccccccceeeeeeeccCCccccCcee--eCCEEEEeeeCCeEEEEE
Q 002615 826 CICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCIA 891 (900)
Q Consensus 826 ~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~--~~~~l~vg~~dg~l~~ld 891 (900)
..++.|+.+.+|...+. +...+..-+..-+.+.-+ ++..+..++.|..+..|.
T Consensus 404 ~TasyD~t~kiWs~~~~-------------~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 404 VTASYDNTVKIWSTRTW-------------SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEcccCcceeeecCCCc-------------ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999987654 222222222222223333 234566677788777664
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-10 Score=137.26 Aligned_cols=285 Identities=8% Similarity=0.042 Sum_probs=172.0
Q ss_pred ceeeceeEecCCCEEEEEeeCCEEEEEECCCC----c----EEEEEecCCceeeeeeEeC-CCCEEEEecCCCeEEEEEC
Q 002615 588 RIECSAAVLADFSQVVVGCYKGKIYFLDYLTG----D----IYWTFQTCGEVKCQPVVDA-PRQLIWCGSHDHNLYALDF 658 (900)
Q Consensus 588 ~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG----~----~~w~~~~~~~~~~~~~~~~-~~~~i~~gs~dg~l~~~d~ 658 (900)
...++..+++++.++++|+.|+.|+.||..+. . ..........+ ....+.. .+..|++++.||.+..||.
T Consensus 484 ~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v-~~l~~~~~~~~~las~~~Dg~v~lWd~ 562 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKL-SGICWNSYIKSQVASSNFEGVVQVWDV 562 (793)
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCce-eeEEeccCCCCEEEEEeCCCeEEEEEC
Confidence 33456788889889999999999999996542 1 11111112222 2223332 3567889999999999999
Q ss_pred CCCeEEEeeccCCccccCceeec-cCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeee-eeCCCEEEEEeec
Q 002615 659 RNYRCVYKLPCGGSIFGSPAIDE-VHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCI-TSANRHVICCLVD 736 (900)
Q Consensus 659 ~~g~~~w~~~~~~~~~~~~~~~~-~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~-~~~~~~i~~~~~~ 736 (900)
.+++.+..+..+.....+..+.+ ++..|+.++.+|.+..||+.+ +..+-........ .+..+ ..++..+++|+.+
T Consensus 563 ~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~--~~~~~~~~~~~~v-~~v~~~~~~g~~latgs~d 639 (793)
T PLN00181 563 ARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ--GVSIGTIKTKANI-CCVQFPSESGRSLAFGSAD 639 (793)
T ss_pred CCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC--CcEEEEEecCCCe-EEEEEeCCCCCEEEEEeCC
Confidence 99998887766554444455543 346788899999999999987 6665555443322 22233 2346678889999
Q ss_pred CcEEEEC-CCCCE-EeeecC-CCceeccccccccCCCeEEEEeeCCeEEEEeCCCC------ceeeEEecCCceeccccc
Q 002615 737 GHVVALD-SSGSI-IWRCRT-GGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESG------NLLWEYSVGDPITASAYI 807 (900)
Q Consensus 737 g~v~~~d-~~G~~-~w~~~~-~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG------~~~w~~~~~~~~~~~~~~ 807 (900)
|.|+.|| .+++. +..... ...+... ....++.++.++.|+.|..||..++ +.+.++..+........+
T Consensus 640 g~I~iwD~~~~~~~~~~~~~h~~~V~~v---~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~ 716 (793)
T PLN00181 640 HKVYYYDLRNPKLPLCTMIGHSKTVSYV---RFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGL 716 (793)
T ss_pred CeEEEEECCCCCccceEecCCCCCEEEE---EEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEE
Confidence 9999999 66542 222221 1222222 1234567889999999999998753 233333322221111111
Q ss_pred ccccccccccccCCCeEEEEEcCCCcEEEEEeecCcccccccccccceeeeee--eccCCccccCcee--eCCEEEEeee
Q 002615 808 DEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAK--LELQGDIFSSPVM--IGGRVFVGCR 883 (900)
Q Consensus 808 ~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~ss~~~--~~~~l~vg~~ 883 (900)
...++++++|+.||.|++|+......... +..... ..... ..-....+++... .+..|+.|+.
T Consensus 717 -----------s~~~~~lasgs~D~~v~iw~~~~~~~~~s-~~~~~~-~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~ 783 (793)
T PLN00181 717 -----------SVSDGYIATGSETNEVFVYHKAFPMPVLS-YKFKTI-DPVSGLEVDDASQFISSVCWRGQSSTLVAANS 783 (793)
T ss_pred -----------cCCCCEEEEEeCCCEEEEEECCCCCceEE-EecccC-CcccccccCCCCcEEEEEEEcCCCCeEEEecC
Confidence 22378999999999999999764311000 000000 00000 0011122333333 3468899999
Q ss_pred CCeEEEEEc
Q 002615 884 DDYIYCIAL 892 (900)
Q Consensus 884 dg~l~~ld~ 892 (900)
+|.|.+|+.
T Consensus 784 dG~I~i~~~ 792 (793)
T PLN00181 784 TGNIKILEM 792 (793)
T ss_pred CCcEEEEec
Confidence 999999985
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.2e-11 Score=113.50 Aligned_cols=235 Identities=14% Similarity=0.130 Sum_probs=155.5
Q ss_pred eCCceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceee
Q 002615 554 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 633 (900)
Q Consensus 554 ~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 633 (900)
....+.|.++++||.+..||..+-..+-++..+..+. .+++.+ ...+|+|+.||.|..+|..+|.... ...+.....
T Consensus 22 ~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL-~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~-igth~~~i~ 98 (323)
T KOG1036|consen 22 SPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLL-DCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ-IGTHDEGIR 98 (323)
T ss_pred cCcCCcEEEEeccCcEEEEeccchhhhhheecCCcee-eeeccC-CceEEEeccCceEEEEEecCCccee-eccCCCceE
Confidence 3457889999999999999988777666676666653 445555 4689999999999999998887653 334444444
Q ss_pred eeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeec
Q 002615 634 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 713 (900)
Q Consensus 634 ~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 713 (900)
+.......+.++.|++|+.+..||+.+..+.-.+..++.+++.- -.+++|++|+.+..+..||+.+ -..-.+...
T Consensus 99 ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~---v~g~~LvVg~~~r~v~iyDLRn--~~~~~q~re 173 (323)
T KOG1036|consen 99 CIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMD---VSGNRLVVGTSDRKVLIYDLRN--LDEPFQRRE 173 (323)
T ss_pred EEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEe---ccCCEEEEeecCceEEEEEccc--ccchhhhcc
Confidence 44444557889999999999999998755554555555444433 2358999999999999999886 332222222
Q ss_pred CCcc--eeeeeeeeCCCEEEEEeecCcEEEEC-CCC----CEEeeec-----CCCc--eeccccccc-cCCCeEEEEeeC
Q 002615 714 EVPA--FASLCITSANRHVICCLVDGHVVALD-SSG----SIIWRCR-----TGGP--IFAGPCTSF-ALPSQVLICSRN 778 (900)
Q Consensus 714 ~~~~--~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G----~~~w~~~-----~~~~--~~~~~~~~~-~~~~~l~~g~~d 778 (900)
..-. .-+.++.+.....++++.+|++.+-. ... +..+.++ ..+. ++....+.+ -..++++.|..|
T Consensus 174 S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsD 253 (323)
T KOG1036|consen 174 SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSD 253 (323)
T ss_pred ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCC
Confidence 1111 13445556667788888999988754 222 1222222 1111 111111111 125689999999
Q ss_pred CeEEEEeCCCCceeeEEe
Q 002615 779 GSIYSFEQESGNLLWEYS 796 (900)
Q Consensus 779 g~l~~~d~~tG~~~w~~~ 796 (900)
|.|.+||+.+.+.+-++.
T Consensus 254 G~V~~Wd~~~rKrl~q~~ 271 (323)
T KOG1036|consen 254 GIVNIWDLFNRKRLKQLA 271 (323)
T ss_pred ceEEEccCcchhhhhhcc
Confidence 999999998877665543
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-10 Score=117.53 Aligned_cols=273 Identities=14% Similarity=0.126 Sum_probs=186.1
Q ss_pred eceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccC
Q 002615 591 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG 670 (900)
Q Consensus 591 ~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~ 670 (900)
++.....+|..+.+|.+||.+..|+ .+|.++-++..+.....+.-+...+.+|..++-|++...||..+|+....+...
T Consensus 239 T~L~Wn~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~ 317 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFH 317 (524)
T ss_pred ceEEecCCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeec
Confidence 4566777889999999999999999 678777666655544444556666788999999999999999999988887765
Q ss_pred CccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEE
Q 002615 671 GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSII 749 (900)
Q Consensus 671 ~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~ 749 (900)
....-.... -.++.+...+.+|.++.+.+.. ..+.-++..+..........+.+..+..++.|+++-.|+ .++.-.
T Consensus 318 s~~~lDVdW-~~~~~F~ts~td~~i~V~kv~~--~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~ 394 (524)
T KOG0273|consen 318 SAPALDVDW-QSNDEFATSSTDGCIHVCKVGE--DRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV 394 (524)
T ss_pred cCCccceEE-ecCceEeecCCCceEEEEEecC--CCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch
Confidence 433111111 1235566666788788776654 345555555555556666666677888899999998888 443222
Q ss_pred eeecCCC----ceecccc---ccc-cCCCeEEEEeeCCeEEEEeCCCCceeeEE-ecCCceecccccccccccccccccC
Q 002615 750 WRCRTGG----PIFAGPC---TSF-ALPSQVLICSRNGSIYSFEQESGNLLWEY-SVGDPITASAYIDEHLQLKLESCLS 820 (900)
Q Consensus 750 w~~~~~~----~~~~~~~---~~~-~~~~~l~~g~~dg~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (900)
..+.... .+..+|. ... ..+-.+..++.|+.|..||...|..+.++ +...++++..+..+
T Consensus 395 ~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~----------- 463 (524)
T KOG0273|consen 395 HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPN----------- 463 (524)
T ss_pred hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCC-----------
Confidence 1111100 1112221 111 12335666788999999999999999887 56667777665554
Q ss_pred CCeEEEEEcCCCcEEEEEeecCcccccccccccceeeeeeeccCCccccCcee--eCCEEEEeeeCCeEEEEEcc
Q 002615 821 IDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCIALE 893 (900)
Q Consensus 821 ~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~--~~~~l~vg~~dg~l~~ld~~ 893 (900)
+.+++.|+.||.|.+|+.+++ +++..+.-.+.+|. ... .+++|-+.-.|+-+.++|+.
T Consensus 464 -g~ylAsGs~dg~V~iws~~~~-------------~l~~s~~~~~~Ife-l~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 464 -GRYLASGSLDGCVHIWSTKTG-------------KLVKSYQGTGGIFE-LCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred -CcEEEecCCCCeeEeccccch-------------heeEeecCCCeEEE-EEEcCCCCEEEEEecCCCceEEEec
Confidence 899999999999999999877 55655555554432 222 45677777778888888864
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-10 Score=118.30 Aligned_cols=270 Identities=14% Similarity=0.113 Sum_probs=187.0
Q ss_pred eeCCceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCcee
Q 002615 553 LKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK 632 (900)
Q Consensus 553 ~~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~ 632 (900)
...++..|..|+.+|.+..|+.. |..+-.+..+.....+.-....|.+|..++.|+++..||..+|...-+|..+....
T Consensus 243 Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~ 321 (524)
T KOG0273|consen 243 WNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPA 321 (524)
T ss_pred ecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCc
Confidence 34456788899999999999975 76666665555444566677888999999999999999999999888887765431
Q ss_pred eeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEee
Q 002615 633 CQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHE 712 (900)
Q Consensus 633 ~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~ 712 (900)
--..+. +...+.+.+.|+.++++-.....++-++..+....+..-..+.+..|..++.|+++..|+... +...-...
T Consensus 322 lDVdW~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~--~~~~~~l~ 398 (524)
T KOG0273|consen 322 LDVDWQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ--SNSVHDLQ 398 (524)
T ss_pred cceEEe-cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC--Ccchhhhh
Confidence 111222 234566777888888887665566666655544555555565567788889999999998554 22222222
Q ss_pred cCCcceeeeee---------eeCCCEEEEEeecCcEEEEC-CCCCEEeee-cCCCceeccccccccCCCeEEEEeeCCeE
Q 002615 713 LEVPAFASLCI---------TSANRHVICCLVDGHVVALD-SSGSIIWRC-RTGGPIFAGPCTSFALPSQVLICSRNGSI 781 (900)
Q Consensus 713 ~~~~~~~s~~~---------~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~-~~~~~~~~~~~~~~~~~~~l~~g~~dg~l 781 (900)
.+...+.+... ...+..+..++.++.|.+|| ..|..+..+ +...|+++..+.. .+..+..|+.||.|
T Consensus 399 ~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~--~g~ylAsGs~dg~V 476 (524)
T KOG0273|consen 399 AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP--NGRYLASGSLDGCV 476 (524)
T ss_pred hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC--CCcEEEecCCCCee
Confidence 22111111111 11345677788899999999 899999887 4456666655322 24578889999999
Q ss_pred EEEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEee
Q 002615 782 YSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 840 (900)
Q Consensus 782 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~ 840 (900)
..|+.++|++...+.-...+....+..+ ++++.++..+|.+.++|.+
T Consensus 477 ~iws~~~~~l~~s~~~~~~Ifel~Wn~~------------G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 477 HIWSTKTGKLVKSYQGTGGIFELCWNAA------------GDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EeccccchheeEeecCCCeEEEEEEcCC------------CCEEEEEecCCCceEEEec
Confidence 9999999999888766555443332222 8899999999999999874
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.3e-10 Score=114.84 Aligned_cols=293 Identities=14% Similarity=0.207 Sum_probs=183.3
Q ss_pred CCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEe---cCC-ceeeeeeEeCC
Q 002615 565 HSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQ---TCG-EVKCQPVVDAP 640 (900)
Q Consensus 565 ~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~---~~~-~~~~~~~~~~~ 640 (900)
.++.+..||-..++..-..+........+.+.+-+..+.+.+..|.+|+|+.+.|.+..+.. ..+ ....+..+. .
T Consensus 178 ~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~-e 256 (626)
T KOG2106|consen 178 NPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFL-E 256 (626)
T ss_pred CccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEc-C
Confidence 34567777766665555555444555567787877788999999999999999887765422 222 223333444 4
Q ss_pred CCEEEEecCCCeEEEEECCCCeEEEeecc-CCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCccee
Q 002615 641 RQLIWCGSHDHNLYALDFRNYRCVYKLPC-GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFA 719 (900)
Q Consensus 641 ~~~i~~gs~dg~l~~~d~~~g~~~w~~~~-~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~ 719 (900)
++.+++|..+|.++.|+..+-+....... .+.+++-..+. ++.|+.|..|..+..||-+ .+.+-..+.+... .
T Consensus 257 ngdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr--~GtllSGgKDRki~~Wd~~---y~k~r~~elPe~~-G 330 (626)
T KOG2106|consen 257 NGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLR--DGTLLSGGKDRKIILWDDN---YRKLRETELPEQF-G 330 (626)
T ss_pred CCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEec--CccEeecCccceEEecccc---ccccccccCchhc-C
Confidence 67799999999999999876665544434 45566554444 4888889999999999833 4444444333221 1
Q ss_pred ee-eeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEEec
Q 002615 720 SL-CITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSV 797 (900)
Q Consensus 720 s~-~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~ 797 (900)
.+ .+....+-+++|+..+.|.-=+ +++..+-..-.+........ ...++.+..++.|+.+..|+ ..++.|+...
T Consensus 331 ~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~--hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~ 406 (626)
T KOG2106|consen 331 PIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLAT--HPSKNQLLTCGQDKHVRLWN--DHKLEWTKII 406 (626)
T ss_pred CeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEc--CCChhheeeccCcceEEEcc--CCceeEEEEe
Confidence 11 2223334488887766554433 33322211111111111110 11245677788999999999 6789999888
Q ss_pred CCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecCcccccccccccceeeeeeeccCCccccCcee--eC
Q 002615 798 GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IG 875 (900)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~--~~ 875 (900)
..+..+..+... + .+++|+..|...++|.++. .++....- ++.++...+ ++
T Consensus 407 ~d~~~~~~fhps------------g-~va~Gt~~G~w~V~d~e~~-------------~lv~~~~d-~~~ls~v~ysp~G 459 (626)
T KOG2106|consen 407 EDPAECADFHPS------------G-VVAVGTATGRWFVLDTETQ-------------DLVTIHTD-NEQLSVVRYSPDG 459 (626)
T ss_pred cCceeEeeccCc------------c-eEEEeeccceEEEEecccc-------------eeEEEEec-CCceEEEEEcCCC
Confidence 877766544332 5 9999999999999998864 22222222 322222111 57
Q ss_pred CEEEEeeeCCeEEEEEcccc
Q 002615 876 GRVFVGCRDDYIYCIALETQ 895 (900)
Q Consensus 876 ~~l~vg~~dg~l~~ld~~tg 895 (900)
..+-+|+.|+.||.|-...+
T Consensus 460 ~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 460 AFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred CEEEEecCCCeEEEEEECCC
Confidence 89999999999998866543
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.3e-11 Score=130.85 Aligned_cols=178 Identities=16% Similarity=0.207 Sum_probs=124.0
Q ss_pred hhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhccCCCCCCCcCEEEEeccCCChhhHHHHHhhCCCceEEeecCccc
Q 002615 47 KKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTE 126 (900)
Q Consensus 47 ~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE 126 (900)
..+.+..++.|++++++++.++|+.+..|++...+... . .+++.++++||++++...+.+.+.| ++++++.||+||
T Consensus 173 ~~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l--~-~~~k~ii~~~E~l~~~~r~~Ie~~f-g~~V~~~YG~tE 248 (430)
T TIGR02304 173 LAPFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGEL--T-IKPKKVISVAEVLEPQDRELIRNVF-KNTVHQIYQATE 248 (430)
T ss_pred CcCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCC--C-CCceEEEEccCCCCHHHHHHHHHHh-CCCeeEccCCch
Confidence 46788899999999999999999999999987665432 1 4799999999999999999999999 799999999999
Q ss_pred cccccceecccCCccccccCCCCcceeeeccCCcEEE--EecCCCCCCCccEEEEccccccccccCCCCCCccchhccCC
Q 002615 127 VSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV--LVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHN 204 (900)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~--i~d~~~~~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~ 204 (900)
+.++ +.|... ...+ -...+-++ ++|+++ .++.+|.+ +.+. ..+++
T Consensus 249 -g~la--~eC~~g----------~lHl--~ed~~~vE~~ivD~~~----~~~~ViT~------L~n~----~~PlI---- 295 (430)
T TIGR02304 249 -GFLA--STCRCG----------TLHL--NEDLVHIEKQYLDEHK----RFVPIITD------FTRT----TQPIV---- 295 (430)
T ss_pred -hheE--EecCCC----------CEEE--ccccEEEEeeEECCCC----ceEEEEec------CCCc----cceEE----
Confidence 5433 233221 0001 11123344 676543 13333332 3221 22222
Q ss_pred cccccCcCCCCCcceEecCceEEEccC----Cc----E-EEEcccCCcEEE---Ccee--eChHHHHHHHh-CCCCeeEE
Q 002615 205 NSICNCSVSCGSQTYFRTGDFARRIQS----GD----L-VFLGRKDRTIKI---NGQR--MALEEIEHTLR-GHPDVVDT 269 (900)
Q Consensus 205 ~~~~~~~~~~~~~~~~~TGDl~~~~~~----G~----l-~~~GR~dd~ik~---~G~r--v~~~~iE~~l~-~~~~v~~~ 269 (900)
-|+|||+++..++ |. + .+.||.||++++ +|.. |.|..++.++. ..+.|.+.
T Consensus 296 --------------RYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~y 361 (430)
T TIGR02304 296 --------------RYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEY 361 (430)
T ss_pred --------------eeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceE
Confidence 2999999987543 43 3 388999999996 4544 58999988744 57889888
Q ss_pred EEEEee
Q 002615 270 AVVSHK 275 (900)
Q Consensus 270 ~v~~~~ 275 (900)
.++...
T Consensus 362 Qi~Q~~ 367 (430)
T TIGR02304 362 RVLQTG 367 (430)
T ss_pred EEEEcc
Confidence 777543
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-10 Score=112.17 Aligned_cols=243 Identities=14% Similarity=0.131 Sum_probs=163.5
Q ss_pred ccccccceEEeeCCceEEEEecCCCeEEEEECCC-CcEEEE--EecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCC
Q 002615 543 SCVDASPLVVLKDSDIYLFVGSHSHKFICADAKR-SSVLWE--IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTG 619 (900)
Q Consensus 543 ~~v~~sp~v~~~~~~~~v~igs~~g~l~~~d~~t-G~~~w~--~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG 619 (900)
.++..||. .+..+..||.|+.|++|+... |...-+ ....+.+ ...+.++++..+|+|+-|+.+..||+.+|
T Consensus 31 S~l~FSP~-----~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~Pv-L~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 31 SALAFSPQ-----ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPV-LDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred heeEeccc-----cCceEEecccCCceEEEEEecCCcccchhhhccCCCe-EEEEEccCCceEEeeccCCceEEEEccCC
Confidence 44556662 466777999999999999876 555432 2233333 46788999999999999999999999999
Q ss_pred cEEEEEecCCceeeeeeEeCC-CCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEE
Q 002615 620 DIYWTFQTCGEVKCQPVVDAP-RQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAI 698 (900)
Q Consensus 620 ~~~w~~~~~~~~~~~~~~~~~-~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~ 698 (900)
+..-.-...+.+++.-.+... ...|.+||+|.+|..||.+.-+++-...+.+.+++.-+.. ..+.+++.+..|..|
T Consensus 105 Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~---pm~vVata~r~i~vy 181 (347)
T KOG0647|consen 105 QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY---PMAVVATAERHIAVY 181 (347)
T ss_pred CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccC---ceeEEEecCCcEEEE
Confidence 776443344556555444321 2357899999999999999999999999988877765553 678899999999999
Q ss_pred EcCCCCceeeeEeecCCcc--eeeeeeeeCCCEEEEEeecCcEEEEC-CCC--CEEeeec--C-----CCceeccccccc
Q 002615 699 SVKALPFHTLWLHELEVPA--FASLCITSANRHVICCLVDGHVVALD-SSG--SIIWRCR--T-----GGPIFAGPCTSF 766 (900)
Q Consensus 699 ~~~~~~g~~~w~~~~~~~~--~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G--~~~w~~~--~-----~~~~~~~~~~~~ 766 (900)
++++ +....+.-..... ..+.++..+.+...+|+.+|++.... ..+ +.-+.++ . .+.+++...+.+
T Consensus 182 nL~n--~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~F 259 (347)
T KOG0647|consen 182 NLEN--PPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAF 259 (347)
T ss_pred EcCC--CcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEe
Confidence 9976 3222111111111 13455556666778899999887766 333 2222222 1 122444433322
Q ss_pred -cCCCeEEEEeeCCeEEEEeCCCCceeeEEe
Q 002615 767 -ALPSQVLICSRNGSIYSFEQESGNLLWEYS 796 (900)
Q Consensus 767 -~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~ 796 (900)
-..|.+...+.||....||.+....+.+++
T Consensus 260 hP~hgtlvTaGsDGtf~FWDkdar~kLk~s~ 290 (347)
T KOG0647|consen 260 HPVHGTLVTAGSDGTFSFWDKDARTKLKTSE 290 (347)
T ss_pred ecccceEEEecCCceEEEecchhhhhhhccC
Confidence 135778888899999999977655444433
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3e-12 Score=124.76 Aligned_cols=274 Identities=12% Similarity=0.062 Sum_probs=173.9
Q ss_pred cCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccC
Q 002615 597 ADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGS 676 (900)
Q Consensus 597 ~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~ 676 (900)
-|++.++.|..|.+|..||..+-..+.....+.... .++.-+...|+.||.|.++..||.++|+++-.+-.+-...-.
T Consensus 205 YDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSV--LCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLh 282 (499)
T KOG0281|consen 205 YDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSV--LCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLH 282 (499)
T ss_pred ecchhhhcccccCceEEeccccHHHHHhhhcCCCcE--EeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEE
Confidence 344578899999999999977766655443333322 233334578899999999999999999987654322211122
Q ss_pred ceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCC
Q 002615 677 PAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG 755 (900)
Q Consensus 677 ~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~ 755 (900)
..+. ++.++..+.+..+..||....+...+-+. ..+...+...+..++.+++.++.|.++..|+ .+++.+-.....
T Consensus 283 lrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrV-LvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gH 359 (499)
T KOG0281|consen 283 LRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRV-LVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGH 359 (499)
T ss_pred EEEe--CCEEEEecCCceeEEEeccCchHHHHHHH-HhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcc
Confidence 2333 48888899999999999775321111111 1111112223444667888899999999999 888876554322
Q ss_pred CceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEE
Q 002615 756 GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIH 835 (900)
Q Consensus 756 ~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~ 835 (900)
.. ...| ....+..++.|+.|.++..||.+.|+.+...+-+...+...-++ +..|..|..||+|.
T Consensus 360 kR--GIAC-lQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd-------------~krIVSGaYDGkik 423 (499)
T KOG0281|consen 360 KR--GIAC-LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD-------------NKRIVSGAYDGKIK 423 (499)
T ss_pred cc--ccee-hhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec-------------CceeeeccccceEE
Confidence 21 1111 13445678888999999999999999887665555544443332 78899999999999
Q ss_pred EEEeecCcccccccccccceeeeeeeccCCccccCceeeCCEEEEeeeCCeEEEEEcccc
Q 002615 836 ILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALETQ 895 (900)
Q Consensus 836 ~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~~~~~l~vg~~dg~l~~ld~~tg 895 (900)
+||...+........ ..-+....+-.|.+ ....+++-.++..+.|..+.+||..++
T Consensus 424 vWdl~aaldpra~~~---~~Cl~~lv~hsgRV-FrLQFD~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 424 VWDLQAALDPRAPAS---TLCLRTLVEHSGRV-FRLQFDEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred EEecccccCCccccc---chHHHhhhhcccee-EEEeecceEEEeccCCCeEEEEEcCCC
Confidence 999987632211000 00000011112222 233446677888889999999998765
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=6e-10 Score=121.39 Aligned_cols=315 Identities=16% Similarity=0.174 Sum_probs=195.7
Q ss_pred ceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecC-Cceeeee
Q 002615 557 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC-GEVKCQP 635 (900)
Q Consensus 557 ~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~-~~~~~~~ 635 (900)
=+.|.+|+.+|.+..||..+|+.+..+.....-.+++.-++.-+.|.+|+.+|.|..+|.+.++++-+|+.. +.+....
T Consensus 172 LNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslS 251 (910)
T KOG1539|consen 172 LNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLS 251 (910)
T ss_pred eeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEE
Confidence 467899999999999999999999887654322223333444457999999999999999999999999986 5554443
Q ss_pred eEeCCCCEEEEecCCCeEEEEECCCCeEEEeecc-C-CccccC------ceee----ccCCEEEE---------------
Q 002615 636 VVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC-G-GSIFGS------PAID----EVHDVLYV--------------- 688 (900)
Q Consensus 636 ~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~-~-~~~~~~------~~~~----~~~~~l~v--------------- 688 (900)
.-.+..-.+.+|+..|.+..||++..+.+|.... + +.+... |++. ++.-.+|+
T Consensus 252 FrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~ 331 (910)
T KOG1539|consen 252 FRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRG 331 (910)
T ss_pred eccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeecc
Confidence 3344344566677779999999999888887653 1 111111 1110 00001111
Q ss_pred ---------------------EeCCCcEEEEEc---------------CC------------------------------
Q 002615 689 ---------------------ASTSGRLTAISV---------------KA------------------------------ 702 (900)
Q Consensus 689 ---------------------~t~~g~l~~~~~---------------~~------------------------------ 702 (900)
+..++.+..++. +.
T Consensus 332 GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W 411 (910)
T KOG1539|consen 332 GHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEW 411 (910)
T ss_pred CCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhh
Confidence 111111111110 00
Q ss_pred ---------CCceeeeEeecCC--------c-------ceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeec----
Q 002615 703 ---------LPFHTLWLHELEV--------P-------AFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCR---- 753 (900)
Q Consensus 703 ---------~~g~~~w~~~~~~--------~-------~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~---- 753 (900)
..-...|.+.... . ...+.++..-++..++|+..|.|-.|+ ++|-..-.+.
T Consensus 412 ~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~a 491 (910)
T KOG1539|consen 412 DNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPA 491 (910)
T ss_pred cceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCcc
Confidence 0000122221110 0 012233444467788898899999999 8887765552
Q ss_pred CCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCc
Q 002615 754 TGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGS 833 (900)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~ 833 (900)
..+++.... ....+..++.++.+|.+..||.+++.++-+.+++..+....+... .+.++++.++=.
T Consensus 492 h~~~V~gla--~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~------------s~l~a~~~ddf~ 557 (910)
T KOG1539|consen 492 HKGEVTGLA--VDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRV------------SDLLAIALDDFS 557 (910)
T ss_pred ccCceeEEE--ecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeeh------------hhhhhhhcCcee
Confidence 223333222 112244578889999999999988888877777776654433322 556777777888
Q ss_pred EEEEEeecCcccccccccccceeeeeeeccCCccccCcee--eCCEEEEeeeCCeEEEEEccccccc
Q 002615 834 IHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCIALETQHLE 898 (900)
Q Consensus 834 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~--~~~~l~vg~~dg~l~~ld~~tg~~~ 898 (900)
|.++|..+. ++...+.-+++-+....+ ++..|.+.+.|++|..||+-|+.+.
T Consensus 558 I~vvD~~t~-------------kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 558 IRVVDVVTR-------------KVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred EEEEEchhh-------------hhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCccee
Confidence 999999865 233333333433333333 5678999999999999999998763
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.4e-09 Score=107.06 Aligned_cols=267 Identities=15% Similarity=0.172 Sum_probs=175.2
Q ss_pred eeCCceEEEEecCCCeEEEEECCCCcEEEEEecC----CceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecC
Q 002615 553 LKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLE----GRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC 628 (900)
Q Consensus 553 ~~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~----~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~ 628 (900)
++..+..+.+....+.++.|++.+|.+.-+..+- .....+.++..++ .++.|..+|.|+.|+..+.++..+...+
T Consensus 208 FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~eng-dviTgDS~G~i~Iw~~~~~~~~k~~~aH 286 (626)
T KOG2106|consen 208 FHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENG-DVITGDSGGNILIWSKGTNRISKQVHAH 286 (626)
T ss_pred eccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCC-CEEeecCCceEEEEeCCCceEEeEeeec
Confidence 4445666777666677999999988766543321 2344567777774 6889999999999998777776554444
Q ss_pred C-ceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCcee
Q 002615 629 G-EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHT 707 (900)
Q Consensus 629 ~-~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~ 707 (900)
. .+.+..+. .++.|+.|..|..|..|| .+-+.+...+++...-..-.+....+.+|+||..+.+..=++++ +-.
T Consensus 287 ~ggv~~L~~l--r~GtllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~--~f~ 361 (626)
T KOG2106|consen 287 DGGVFSLCML--RDGTLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLEN--GFT 361 (626)
T ss_pred CCceEEEEEe--cCccEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecC--Cce
Confidence 3 44443333 347888899999999999 44445555555432222222333345599999887776655554 222
Q ss_pred eeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEECCCCCEEeeecCCCceeccccccccCCCeEEEEeeCCeEEEEeCC
Q 002615 708 LWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQE 787 (900)
Q Consensus 708 ~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~ 787 (900)
+-... +....-..+..++.+.+..++.++.+..|+ +.+++|......+..+.. +...+.+.+|+..|...++|.+
T Consensus 362 ~~v~g-h~delwgla~hps~~q~~T~gqdk~v~lW~-~~k~~wt~~~~d~~~~~~---fhpsg~va~Gt~~G~w~V~d~e 436 (626)
T KOG2106|consen 362 LTVQG-HGDELWGLATHPSKNQLLTCGQDKHVRLWN-DHKLEWTKIIEDPAECAD---FHPSGVVAVGTATGRWFVLDTE 436 (626)
T ss_pred EEEEe-cccceeeEEcCCChhheeeccCcceEEEcc-CCceeEEEEecCceeEee---ccCcceEEEeeccceEEEEecc
Confidence 21111 111112334445667788888999999998 457889988777765554 3445589999999999999999
Q ss_pred CCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecC
Q 002615 788 SGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 842 (900)
Q Consensus 788 tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~ 842 (900)
+..++-...-..++....+ .+++..+++|+.|+.||+|..+.+
T Consensus 437 ~~~lv~~~~d~~~ls~v~y------------sp~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 437 TQDLVTIHTDNEQLSVVRY------------SPDGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred cceeEEEEecCCceEEEEE------------cCCCCEEEEecCCCeEEEEEECCC
Confidence 8555433222333333222 234899999999999999988754
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.5e-10 Score=125.37 Aligned_cols=241 Identities=13% Similarity=0.120 Sum_probs=178.8
Q ss_pred ceeEecCCCEEEEEeeCCEEEEEECCCCc--EEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEEC-CCCeEEEeec
Q 002615 592 SAAVLADFSQVVVGCYKGKIYFLDYLTGD--IYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDF-RNYRCVYKLP 668 (900)
Q Consensus 592 ~~~~~~~~~~i~vg~~dg~l~~~d~~tG~--~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~-~~g~~~w~~~ 668 (900)
+..++.++..+..++.++.+..|+..+++ ..-....+........+.+++..+..++.|++++.||. ..+..+..+.
T Consensus 164 ~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~ 243 (456)
T KOG0266|consen 164 CVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK 243 (456)
T ss_pred EEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec
Confidence 46778899898889999999999987776 44333334455566667777778999999999999999 6668888888
Q ss_pred cCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCC
Q 002615 669 CGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGS 747 (900)
Q Consensus 669 ~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~ 747 (900)
.+.....+.++.+.++.++.|+.|+.++.||.++ |+.+-....+........+..++..++++++|+.+..|| .+|.
T Consensus 244 gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~--~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 244 GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT--GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGS 321 (456)
T ss_pred CCCCceEEEEecCCCCEEEEecCCCcEEEEeccC--CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCc
Confidence 7777777778888778899999999999999998 898888888887777788888899999999999999999 8887
Q ss_pred EE--eeecCCCceeccccccc-cCCCeEEEEeeCCeEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCeE
Q 002615 748 II--WRCRTGGPIFAGPCTSF-ALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRL 824 (900)
Q Consensus 748 ~~--w~~~~~~~~~~~~~~~~-~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (900)
.. -............++.. -....+++++.|+.+..||..+++..-.+.....-....+. ......+..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 393 (456)
T KOG0266|consen 322 KLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFS--------PTLSTGGKL 393 (456)
T ss_pred eeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEec--------ccccCCCCe
Confidence 32 22221111101111112 23567888999999999999999877655443332111110 001233889
Q ss_pred EEEEcCCCcEEEEEeecC
Q 002615 825 VCICTSSGSIHILRVNLD 842 (900)
Q Consensus 825 l~~g~~~G~v~~~d~~~~ 842 (900)
+++|+.|+.|++|+..++
T Consensus 394 i~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 394 IYSGSEDGSVYVWDSSSG 411 (456)
T ss_pred EEEEeCCceEEEEeCCcc
Confidence 999999999999999865
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=9e-11 Score=115.80 Aligned_cols=238 Identities=13% Similarity=0.093 Sum_probs=160.7
Q ss_pred ceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCC-eEEEeeccC
Q 002615 592 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY-RCVYKLPCG 670 (900)
Q Consensus 592 ~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g-~~~w~~~~~ 670 (900)
...+.++...+++.+.|++|++||..||++.-....+........++..+..+...+.|-.+..||..+- +++.....+
T Consensus 113 ~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh 192 (406)
T KOG0295|consen 113 RVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGH 192 (406)
T ss_pred eeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCc
Confidence 3445555555677778999999999999986544444433445556666666777777766777776541 222222224
Q ss_pred CccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEE
Q 002615 671 GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSII 749 (900)
Q Consensus 671 ~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~ 749 (900)
....+++++.+.++.|..++.+..+..|+..+ |-.+.++..+...+....+..++-.+..++.+.++..|- .+++..
T Consensus 193 ~h~vS~V~f~P~gd~ilS~srD~tik~We~~t--g~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k 270 (406)
T KOG0295|consen 193 EHGVSSVFFLPLGDHILSCSRDNTIKAWECDT--GYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCK 270 (406)
T ss_pred ccceeeEEEEecCCeeeecccccceeEEeccc--ceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhh
Confidence 45678888888889999999999999999998 888877776666555555554544455566778888877 555211
Q ss_pred -----eeecCC----CceeccccccccC-----CCeEEEEeeCCeEEEEeCCCCceeeEEecCCceeccccccccccccc
Q 002615 750 -----WRCRTG----GPIFAGPCTSFAL-----PSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKL 815 (900)
Q Consensus 750 -----w~~~~~----~~~~~~~~~~~~~-----~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~ 815 (900)
.+.... .+..+.|.+.... ...+..++.|+.+..||..+|..+.++..+.+.+....+..
T Consensus 271 ~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p------ 344 (406)
T KOG0295|consen 271 AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP------ 344 (406)
T ss_pred hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC------
Confidence 111100 0111122222111 23688889999999999999999998877766655544433
Q ss_pred ccccCCCeEEEEEcCCCcEEEEEeecC
Q 002615 816 ESCLSIDRLVCICTSSGSIHILRVNLD 842 (900)
Q Consensus 816 ~~~~~~~~~l~~g~~~G~v~~~d~~~~ 842 (900)
.|.+|+.+.+|+.|++||.+++
T Consensus 345 -----~Gkyi~ScaDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 345 -----GGKYILSCADDKTLRVWDLKNL 366 (406)
T ss_pred -----CCeEEEEEecCCcEEEEEeccc
Confidence 2889999999999999999976
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.2e-10 Score=107.81 Aligned_cols=266 Identities=11% Similarity=0.125 Sum_probs=179.7
Q ss_pred CCceEEEEecCCCeEEEEECC-CCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceee
Q 002615 555 DSDIYLFVGSHSHKFICADAK-RSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 633 (900)
Q Consensus 555 ~~~~~v~igs~~g~l~~~d~~-tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 633 (900)
.++..+..|++|..|+.|+.. .-+-.|..+++....-......+++.|+..+.|.+++.||.++|+...+++.+...+.
T Consensus 57 P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vN 136 (338)
T KOG0265|consen 57 PDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVN 136 (338)
T ss_pred CCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceee
Confidence 356677888899999999954 3344677777665444556778888999999999999999999999988888776554
Q ss_pred eeeEeC-CCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEee
Q 002615 634 QPVVDA-PRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHE 712 (900)
Q Consensus 634 ~~~~~~-~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~ 712 (900)
+..... .-..|-.|+.|+++..||..+.+.+..+...-. ..+..+.+..+.++.|.-++.+..||+.. ...+....
T Consensus 137 s~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyq-ltAv~f~d~s~qv~sggIdn~ikvWd~r~--~d~~~~ls 213 (338)
T KOG0265|consen 137 SLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQ-LTAVGFKDTSDQVISGGIDNDIKVWDLRK--NDGLYTLS 213 (338)
T ss_pred ecCccccCCeEEEecCCCceEEEEeecccchhhcccccee-EEEEEecccccceeeccccCceeeecccc--CcceEEee
Confidence 332221 223466689999999999998777665533222 22334455567899999999999999977 56677676
Q ss_pred cCCcceeeeeeeeCCCEEEEEeecCcEEEEC-C---CCCE-EeeecC-----CCceeccccccccCCCeEEEEeeCCeEE
Q 002615 713 LEVPAFASLCITSANRHVICCLVDGHVVALD-S---SGSI-IWRCRT-----GGPIFAGPCTSFALPSQVLICSRNGSIY 782 (900)
Q Consensus 713 ~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~---~G~~-~w~~~~-----~~~~~~~~~~~~~~~~~l~~g~~dg~l~ 782 (900)
.+...+.......++..+..-+.|..+..+| . .++. +-.+.. +...+. |...-....+-+|+.|..+|
T Consensus 214 Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~--cswsp~~~~i~ags~dr~vy 291 (338)
T KOG0265|consen 214 GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK--CSWSPNGTKITAGSADRFVY 291 (338)
T ss_pred cccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce--eeccCCCCccccccccceEE
Confidence 6766666777777888888888888898888 2 3332 211111 111111 11122345677889999999
Q ss_pred EEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEE
Q 002615 783 SFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHI 836 (900)
Q Consensus 783 ~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~ 836 (900)
.||..+-.++.+.+-+...+....+ .+....+..++.|.+||.
T Consensus 292 vwd~~~r~~lyklpGh~gsvn~~~F-----------hp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 292 VWDTTSRRILYKLPGHYGSVNEVDF-----------HPTEPIILSCSSDKTIYL 334 (338)
T ss_pred EeecccccEEEEcCCcceeEEEeee-----------cCCCcEEEEeccCceeEe
Confidence 9998776777665533322221111 122677788888887764
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.9e-10 Score=122.17 Aligned_cols=337 Identities=10% Similarity=0.067 Sum_probs=210.7
Q ss_pred ccccccccccc------cccceEE--eeCCceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCC--EEEE
Q 002615 535 ELWKVHMESCV------DASPLVV--LKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFS--QVVV 604 (900)
Q Consensus 535 ~~W~~~~~~~v------~~sp~v~--~~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~--~i~v 604 (900)
.+|..++++++ .-.|++. +...++.+..|+.+|.+..||...+.....++.++.+.++..+.++-. .+++
T Consensus 87 rv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~s 166 (775)
T KOG0319|consen 87 RVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLAS 166 (775)
T ss_pred EEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheee
Confidence 44666666654 2356655 334557788899999999999999999999998888777778776543 3788
Q ss_pred EeeCCEEEEEECCCCcE-EEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeec--
Q 002615 605 GCYKGKIYFLDYLTGDI-YWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDE-- 681 (900)
Q Consensus 605 g~~dg~l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~-- 681 (900)
|..|+.+++||..++.. +.....+.....+..+..++..++.++.|..++.||..+-+..........+-+......
T Consensus 167 g~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~ 246 (775)
T KOG0319|consen 167 GATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREEL 246 (775)
T ss_pred cCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhc
Confidence 99999999999887765 222222333344445555677788888999999999866555444433322222222211
Q ss_pred --cCCEEEEEeCCCcEEEEEcCCCCceeeeEeecC-CcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCCc
Q 002615 682 --VHDVLYVASTSGRLTAISVKALPFHTLWLHELE-VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP 757 (900)
Q Consensus 682 --~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~-~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~ 757 (900)
.+..++.++.+|.+..|+.++ ++.+.+..-. .+.+.........+.+++.+.+..+..+| .++++.-++-....
T Consensus 247 ~~~~~~~~TaG~~g~~~~~d~es--~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~nd 324 (775)
T KOG0319|consen 247 GGKGEYIITAGGSGVVQYWDSES--GKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYND 324 (775)
T ss_pred CCcceEEEEecCCceEEEEeccc--chhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCch
Confidence 134677888899999999887 7665544332 22233444455567778888899999999 77777644432222
Q ss_pred eeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEE
Q 002615 758 IFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHIL 837 (900)
Q Consensus 758 ~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~ 837 (900)
.....+.....++.+.+++..+.+..|+..+-... .+.-+.....+..+. .++.++..|+.|..+++|
T Consensus 325 EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~-----------~~g~llat~sKD~svilW 392 (775)
T KOG0319|consen 325 EILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVW-----------SSGDLLATGSKDKSVILW 392 (775)
T ss_pred hheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeec-----------ccCcEEEEecCCceEEEE
Confidence 22222222334578999999999999987654433 333333333322211 125699999999999999
Q ss_pred EeecCcccccccccccceeeeeeeccCCccccCcee---eCCEEEEeeeCCeEEEEEccc
Q 002615 838 RVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM---IGGRVFVGCRDDYIYCIALET 894 (900)
Q Consensus 838 d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~---~~~~l~vg~~dg~l~~ld~~t 894 (900)
..+++..... ......-+...+..... .-..+..++.|..+..|++..
T Consensus 393 r~~~~~~~~~---------~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~ 443 (775)
T KOG0319|consen 393 RLNNNCSKSL---------CVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPK 443 (775)
T ss_pred EecCCcchhh---------hhhhhcccccccceeeecccCccEEEEecCCceEEEecCCC
Confidence 8854422111 01111111111111111 124567788899999998764
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.5e-10 Score=117.64 Aligned_cols=279 Identities=14% Similarity=0.105 Sum_probs=196.8
Q ss_pred eceeEecCCCEEEEEeeCCEEEEEECCCCcEEEE-EecC-CceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeec
Q 002615 591 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWT-FQTC-GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLP 668 (900)
Q Consensus 591 ~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~-~~~~-~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~ 668 (900)
.+.+++...+.+.++-.+|.|-.|++.++=..-. +..+ +......++. +++.++..+.+|.|..||+.+++.+...+
T Consensus 29 ~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d 107 (691)
T KOG2048|consen 29 VSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNID 107 (691)
T ss_pred EEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEec
Confidence 3667777777899999999999999988643322 2222 1223334455 46889999999999999999999999999
Q ss_pred cCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCc--ceeeeeeeeCCCEEEEEeecCcEEEEC-CC
Q 002615 669 CGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVP--AFASLCITSANRHVICCLVDGHVVALD-SS 745 (900)
Q Consensus 669 ~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~--~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~ 745 (900)
..+..+.+.++.+.+..+.+|+.+|.++-++..+ +++.....+... -..+.....++..++.|+.||.|.++| ..
T Consensus 108 ~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p--~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~ 185 (691)
T KOG2048|consen 108 SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGP--DKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS 185 (691)
T ss_pred CCCcceeEEEeCCccceEEeecCCceEEEEecCC--ceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC
Confidence 8777777777777788999999999888888776 777766555433 223445555566689999999999999 88
Q ss_pred CCEEeeecC--CCceecccc----ccccCCCeEEEEeeCCeEEEEeCCCCceeeEEecCCceeccccccccccccccccc
Q 002615 746 GSIIWRCRT--GGPIFAGPC----TSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCL 819 (900)
Q Consensus 746 G~~~w~~~~--~~~~~~~~~----~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (900)
|..+...+. ..---..++ +....++.|..|..-|.|..||.+.|.+.-.+.....-+....+.+
T Consensus 186 ~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~---------- 255 (691)
T KOG2048|consen 186 GQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVAD---------- 255 (691)
T ss_pred CceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcC----------
Confidence 877652221 110000111 1244688999999999999999999998766655443333333322
Q ss_pred CCCeEEEEEcCCCcEEEEEeecCcccccccccccceeeeeeeccCCccccCceeeCCEEEEeeeCCeEEEEEc
Q 002615 820 SIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIAL 892 (900)
Q Consensus 820 ~~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~~~~~l~vg~~dg~l~~ld~ 892 (900)
.++.+++++-|+.+..|...++...|. ......+++.-+.+.++.+..++.|.+|..|+.-..
T Consensus 256 -~~d~vfsaGvd~~ii~~~~~~~~~~wv---------~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 256 -NEDRVFSAGVDPKIIQYSLTTNKSEWV---------INSRRDLHAHDVRSMAVIENALISGGRDFTLAICSS 318 (691)
T ss_pred -CCCeEEEccCCCceEEEEecCCcccee---------eeccccCCcccceeeeeecceEEecceeeEEEEccc
Confidence 278999999999999998876643211 112234566666777888889999999998886543
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.1e-09 Score=101.22 Aligned_cols=236 Identities=12% Similarity=0.059 Sum_probs=157.3
Q ss_pred eceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecC--CCeEEEEECCCCeEEEeec
Q 002615 591 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH--DHNLYALDFRNYRCVYKLP 668 (900)
Q Consensus 591 ~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~--dg~l~~~d~~~g~~~w~~~ 668 (900)
.+.-++++|..+.+.+.|..|..||..+|++..+............+......+..++. |..|..+++.+.+.+..+.
T Consensus 18 ~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~ 97 (311)
T KOG1446|consen 18 NSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFP 97 (311)
T ss_pred eEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcC
Confidence 36778889888998888889999999999998877655333333344444455666655 7889999999999999999
Q ss_pred cCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-C-C-
Q 002615 669 CGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-S-S- 745 (900)
Q Consensus 669 ~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~-~- 745 (900)
.+.....+..+.+.++..+.++.|+.++.||++. -+..-......+. ..+..+.+-.+.++.....|..|| + -
T Consensus 98 GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~--~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~d 173 (311)
T KOG1446|consen 98 GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRV--KKCQGLLNLSGRP--IAAFDPEGLIFALANGSELIKLYDLRSFD 173 (311)
T ss_pred CCCceEEEEEecCCCCeEEecccCCeEEeeEecC--CCCceEEecCCCc--ceeECCCCcEEEEecCCCeEEEEEecccC
Confidence 8888888888888788899999999999999885 3333333332222 223333333333344444788888 3 2
Q ss_pred CCE--EeeecCCCceecccccccc-CCCeEEEEeeCCeEEEEeCCCCceeeEEecCCcee---ccccccccccccccccc
Q 002615 746 GSI--IWRCRTGGPIFAGPCTSFA-LPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPIT---ASAYIDEHLQLKLESCL 819 (900)
Q Consensus 746 G~~--~w~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~---~~~~~~~~~~~~~~~~~ 819 (900)
..+ ...+..+...-.. .+.+. .+..|.+++..+.++.+|.-+|.++-++....... ..+++ .
T Consensus 174 kgPF~tf~i~~~~~~ew~-~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f-----------t 241 (311)
T KOG1446|consen 174 KGPFTTFSITDNDEAEWT-DLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF-----------T 241 (311)
T ss_pred CCCceeEccCCCCcccee-eeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEE-----------C
Confidence 111 1222211110000 01111 24568889999999999999999887765443222 22222 2
Q ss_pred CCCeEEEEEcCCCcEEEEEeecC
Q 002615 820 SIDRLVCICTSSGSIHILRVNLD 842 (900)
Q Consensus 820 ~~~~~l~~g~~~G~v~~~d~~~~ 842 (900)
+++.++..|+.||.|++|+.++|
T Consensus 242 Pds~Fvl~gs~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 242 PDSKFVLSGSDDGTIHVWNLETG 264 (311)
T ss_pred CCCcEEEEecCCCcEEEEEcCCC
Confidence 34889999999999999999877
|
|
| >PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-11 Score=99.24 Aligned_cols=70 Identities=47% Similarity=0.625 Sum_probs=61.4
Q ss_pred HHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccC--CEEEEcCC-cCCCCC
Q 002615 255 EIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP--NRFVFMDS-LPMTSS 331 (900)
Q Consensus 255 ~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P--~~~~~v~~-lP~t~~ 331 (900)
|||++|.+||+|.+|+|++.++...++.++||+++ ..++|+++++++||.|++| ..++.+++ ||+|++
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~---------~~~~i~~~~~~~l~~~~~P~~~~~v~~~~~lP~t~~ 71 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL---------DEEEIRDHLRDKLPPYMVPRRIRFVRLDEELPRTPS 71 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE---------HHHHHHHHHHHHS-GGGS-SEEEEEEESSSEEBETT
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe---------eecccccchhhhCCCcceeeEEEEccccCcCCCCCC
Confidence 79999999999999999999988888999999998 1278999999999999999 66666677 999999
Q ss_pred CC
Q 002615 332 GK 333 (900)
Q Consensus 332 GK 333 (900)
||
T Consensus 72 GK 73 (73)
T PF13193_consen 72 GK 73 (73)
T ss_dssp SS
T ss_pred CC
Confidence 98
|
... |
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.5e-10 Score=116.16 Aligned_cols=276 Identities=17% Similarity=0.144 Sum_probs=184.5
Q ss_pred eeceeEecCCCEEEEEeeCCEEEEEECCCCcEE---EEEe---------------cCCceeeeeeEeCCCCEEEEecCCC
Q 002615 590 ECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIY---WTFQ---------------TCGEVKCQPVVDAPRQLIWCGSHDH 651 (900)
Q Consensus 590 ~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~---w~~~---------------~~~~~~~~~~~~~~~~~i~~gs~dg 651 (900)
.+++++++++.++|.++.+|.|..|+..+|+.. |..+ .+..-..+.++..++.++.+|..|.
T Consensus 145 ~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~ 224 (479)
T KOG0299|consen 145 VTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDR 224 (479)
T ss_pred ceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCc
Confidence 346778888889999999999999999999743 3321 1111223455667788899999999
Q ss_pred eEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEE
Q 002615 652 NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVI 731 (900)
Q Consensus 652 ~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~ 731 (900)
.+..||..+++.+..+..+-...++.++....+.+|.++.++.+..|+++. ...+-+...+...........-...+-
T Consensus 225 ~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~--~s~vetlyGHqd~v~~IdaL~reR~vt 302 (479)
T KOG0299|consen 225 HVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ--LSYVETLYGHQDGVLGIDALSRERCVT 302 (479)
T ss_pred eEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH--hHHHHHHhCCccceeeechhcccceEE
Confidence 999999999998888777666667777777678899999999999999875 333333333333333333333455566
Q ss_pred EEeecCcEEEEC-C-CCCEEeeecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEEecCCceeccc-ccc
Q 002615 732 CCLVDGHVVALD-S-SGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASA-YID 808 (900)
Q Consensus 732 ~~~~~g~v~~~d-~-~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~-~~~ 808 (900)
+|..|.++..|+ . .-++++.-. . .+..|+...++..++.|+.+|.|+.|+..+.+++......+++...+ -+.
T Consensus 303 VGgrDrT~rlwKi~eesqlifrg~-~---~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~ 378 (479)
T KOG0299|consen 303 VGGRDRTVRLWKIPEESQLIFRGG-E---GSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVN 378 (479)
T ss_pred eccccceeEEEeccccceeeeeCC-C---CCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccc
Confidence 676788888887 3 334444322 1 23345556677889999999999999999999999887766544332 000
Q ss_pred cccccccc--cccCCCeEEEEEcCCCcEEEEEeecCcccccccccccceeeeeeeccCCccccCcee-eCCEEEEee
Q 002615 809 EHLQLKLE--SCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM-IGGRVFVGC 882 (900)
Q Consensus 809 ~~~~~~~~--~~~~~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~-~~~~l~vg~ 882 (900)
.+ .... ......++++.|+.+|.|.+|....|.. . .+.+..+.+.|-+.+-... .+..|++|+
T Consensus 379 ~~--~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r-~--------i~~l~~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 379 GN--FWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR-A--------INLLYSLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred cc--cceeeeEecccCceEEecCCCCceEEEEecCCcc-c--------cceeeecccccEEEEEEEccCCCEEEEec
Confidence 00 0111 1234578999999999999999987621 1 1445555555544332222 345688885
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.3e-10 Score=127.35 Aligned_cols=322 Identities=20% Similarity=0.217 Sum_probs=198.5
Q ss_pred CCCCcEEEEccCcchHhHH-HHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhhccC-
Q 002615 7 LHGEELLLFKTSISFIDHL-QEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHN- 84 (900)
Q Consensus 7 ~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~~~~- 84 (900)
+.+..-++.+.+.+-..|+ ...|+..++|.+.++.+|.++..+|..|+..|++++|.-++.+=+.+..+.........
T Consensus 981 l~~~rpl~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~en 1060 (1363)
T KOG3628|consen 981 LYKSRPLLGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVEN 1060 (1363)
T ss_pred cccCCceEEEecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccch
Confidence 3444444555555544444 55888999999988888999999999999999999999988888888877654332211
Q ss_pred ----CCCCCCcCEEEEeccCCChhhHHHHHhhCCC-----ceEEeecCccccccccceecccCCcccc-------ccCCC
Q 002615 85 ----MHVPSSLKLLVLSGEVLPLSMWDIISKLFPN-----ISILNLYGSTEVSGDCTYFDCKRLPSIL-------EMSTL 148 (900)
Q Consensus 85 ----~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~-----~~l~~~YG~TE~~~~~~~~~~~~~~~~~-------~~~~~ 148 (900)
..+.++ ..++..=|.....+.+.|.+.|.. ..+--.|+.-=--.+|........|... .....
T Consensus 1061 l~~~gnn~s~-s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV 1139 (1363)
T KOG3628|consen 1061 LSKRGNNTSS-SIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRV 1139 (1363)
T ss_pred hhhhhccccc-ceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccce
Confidence 011222 445555556566777777766521 1222233322111111110000000000 00000
Q ss_pred Ccc-----------eeeeccCCcEEEEecCCCC----CCCccEEEEccccccccccCCCCCCccchhccCCcccccCcCC
Q 002615 149 KSV-----------PIGLPISNCDIVLVESDTV----KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVS 213 (900)
Q Consensus 149 ~~~-----------~~G~p~~~~~~~i~d~~~~----~~~~GEl~v~g~~~~~gY~~~~~~~~~~f~~~~~~~~~~~~~~ 213 (900)
..+ .-|.-.+++++.|++++.. .++.||||+.+..-+.+|++..+ + +.....+.... ...
T Consensus 1140 ~~ve~~ap~~l~L~dSG~~~~~~~i~IvnPEtk~pc~dge~GEIW~~S~hnA~~~~~~~d---~-~~~~~fn~rl~-~g~ 1214 (1363)
T KOG3628|consen 1140 RLVEVGAPHSLLLYDSGKLPVYTDIAIVNPETKGPCRDGELGEIWVNSAHNASCSFTIGD---E-LRSNHFNARLS-SGD 1214 (1363)
T ss_pred eeeecCCCCccccccCCcccccceeEEeCCccccccccCCcceEEeccccccccccccCc---h-hhhhhhhhhcc-ccc
Confidence 111 1266678899999988773 45679999999988888776411 1 22221111100 011
Q ss_pred CCCcceEecCceEEEcc------C----CcEEEEcccCCcEEECceeeChHHHHHHHhC-CCCeeEEEEEEeecCCceEE
Q 002615 214 CGSQTYFRTGDFARRIQ------S----GDLVFLGRKDRTIKINGQRMALEEIEHTLRG-HPDVVDTAVVSHKHQGELVI 282 (900)
Q Consensus 214 ~~~~~~~~TGDl~~~~~------~----G~l~~~GR~dd~ik~~G~rv~~~~iE~~l~~-~~~v~~~~v~~~~~~~~~~~ 282 (900)
..+..|-||||||.... + ..||++|-.++.+.+||.|..|.+||..+.+ ||.|..|+|+.... .
T Consensus 1215 ~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~~g-----l 1289 (1363)
T KOG3628|consen 1215 LLGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVFQATG-----L 1289 (1363)
T ss_pred cccccceeeeeeeeeeeeecccccceeeeeEEEeecccceeeecCcccCcchHHHHHHHhcccccceeeEeeCC-----e
Confidence 22567999999998632 2 3589999999999999999999999998876 99999999997654 4
Q ss_pred EEEEEEecCCCCchHHHHHHHHHHHHhhCCCCccCCEEEEcCC--cCCCCCCCcchhhhccc
Q 002615 283 LVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDS--LPMTSSGKVDYASLSAS 342 (900)
Q Consensus 283 l~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~~~~v~~--lP~t~~GKidr~~L~~~ 342 (900)
+|..++...+. ....+..-|...+-+. ++.+-+.+++|+. +|+++.|.-+|..+++.
T Consensus 1290 vVvviE~~gq~-~~~~LvPlIv~~vL~e--H~iI~dvV~fV~~G~~p~~~~gEK~R~~I~~~ 1348 (1363)
T KOG3628|consen 1290 VVVVIECHGQQ-ELADLVPLIVNVVLEE--HYIILDVVAFVDKGVFPRNSRGEKQRAHILDS 1348 (1363)
T ss_pred EEEEEEecCch-hHhhhhHHHHHHHHhh--cceEEEEEEEecCCccccCCchhhHHHHHHHH
Confidence 66666665522 2222222222222221 3566677777765 99999998888877654
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.4e-09 Score=111.37 Aligned_cols=271 Identities=11% Similarity=0.107 Sum_probs=161.7
Q ss_pred EEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEE-ecCCCeEEEEECCCCeEEEeeccCCccccCcee
Q 002615 601 QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWC-GSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAI 679 (900)
Q Consensus 601 ~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~-gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~ 679 (900)
.+++++.|+.++.||..+++.+..+..+..+. ...+.+++..+|+ ++.++.++.||..+++.+..+..+... ....+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~-~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~ 80 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQRPR-GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP-ELFAL 80 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCCCCC-ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc-cEEEE
Confidence 35566789999999999999888777554433 3456666666654 567889999999999887766544332 23445
Q ss_pred eccCCEEEEEe-CCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecC-cEEEEC-CCCCEEeeecCCC
Q 002615 680 DEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDG-HVVALD-SSGSIIWRCRTGG 756 (900)
Q Consensus 680 ~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g-~v~~~d-~~G~~~w~~~~~~ 756 (900)
.++++.+|+++ .++.+..||+.+ ++.+.....+... ....+.+++..++++..++ .+..+| .+++.......+.
T Consensus 81 ~~~g~~l~~~~~~~~~l~~~d~~~--~~~~~~~~~~~~~-~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 157 (300)
T TIGR03866 81 HPNGKILYIANEDDNLVTVIDIET--RKVLAEIPVGVEP-EGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQ 157 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCC--CeEEeEeeCCCCc-ceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCC
Confidence 55566787765 478899999887 6666555433221 3445566677777776554 356678 6666654433222
Q ss_pred ceecccccccc-CCCeEEEEe-eCCeEEEEeCCCCceeeEEecCCceec-ccccccccccccccccCCCeEEEEE-cCCC
Q 002615 757 PIFAGPCTSFA-LPSQVLICS-RNGSIYSFEQESGNLLWEYSVGDPITA-SAYIDEHLQLKLESCLSIDRLVCIC-TSSG 832 (900)
Q Consensus 757 ~~~~~~~~~~~-~~~~l~~g~-~dg~l~~~d~~tG~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~g-~~~G 832 (900)
.... +... .+..+++++ .+|.++.||.++++..-.+........ ...... ......++..++++ ..++
T Consensus 158 ~~~~---~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~s~dg~~~~~~~~~~~ 229 (300)
T TIGR03866 158 RPRF---AEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV-----GIKLTKDGKTAFVALGPAN 229 (300)
T ss_pred CccE---EEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCcc-----ceEECCCCCEEEEEcCCCC
Confidence 2111 1122 234566665 489999999999887544432211000 000000 00012235666654 4466
Q ss_pred cEEEEEeecCcccccccccccceeeeeeeccCCccccCcee--eCCEEEEee-eCCeEEEEEccccccc
Q 002615 833 SIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGC-RDDYIYCIALETQHLE 898 (900)
Q Consensus 833 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~--~~~~l~vg~-~dg~l~~ld~~tg~~~ 898 (900)
.+.+||.+++ +....... +.......+ .+..||++. .+|.|.+||..+++..
T Consensus 230 ~i~v~d~~~~-------------~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 230 RVAVVDAKTY-------------EVLDYLLV-GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI 284 (300)
T ss_pred eEEEEECCCC-------------cEEEEEEe-CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 7999998754 22211111 112222223 456788865 5899999999998853
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.9e-10 Score=119.89 Aligned_cols=308 Identities=15% Similarity=0.159 Sum_probs=206.4
Q ss_pred CceEEEEecCCCeEEEEECCCCcEEEEEec--CCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceee
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWEIKL--EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 633 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 633 (900)
++..++.++++..+..|+..+|++....+. ...+ ....+.+.+..+..|+.||.+.+||...+.....+..++.+.+
T Consensus 73 d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pv-i~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVs 151 (775)
T KOG0319|consen 73 DEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPV-ITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVS 151 (775)
T ss_pred CccEEEEeeccceEEEEEcccchHhHhHhhccCCCe-EEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEE
Confidence 477899999999999999999987644333 3333 3456777777888999999999999999999999988788888
Q ss_pred eeeEeCC--CCEEEEecCCCeEEEEECCCCeE-EEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeE
Q 002615 634 QPVVDAP--RQLIWCGSHDHNLYALDFRNYRC-VYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWL 710 (900)
Q Consensus 634 ~~~~~~~--~~~i~~gs~dg~l~~~d~~~g~~-~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~ 710 (900)
+..+.+. ...++.|..|+.+++||..++.. +.....+.+-..+..+..++..++.++.+..++.||... .+.+-.
T Consensus 152 sl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~--~~~l~~ 229 (775)
T KOG0319|consen 152 SLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQ--YKKLKT 229 (775)
T ss_pred EEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhh--hhhhhe
Confidence 8887764 33478899999999999986654 333333333344445555567788888899999999865 444333
Q ss_pred eecCCcceeeeeeeeC-----CCEEEEEeecCcEEEEC-CCCCEEeeecCC-CceeccccccccCCCeEEEEeeCCeEEE
Q 002615 711 HELEVPAFASLCITSA-----NRHVICCLVDGHVVALD-SSGSIIWRCRTG-GPIFAGPCTSFALPSQVLICSRNGSIYS 783 (900)
Q Consensus 711 ~~~~~~~~~s~~~~~~-----~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~-~~~~~~~~~~~~~~~~l~~g~~dg~l~~ 783 (900)
....... .+.....+ +.+++..+.+|.+..+| .+|+.+.+.... .+- ...+......+.+++.+.+..+..
T Consensus 230 lp~ye~~-E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e-~~~~~~~~~~~~~l~vtaeQnl~l 307 (775)
T KOG0319|consen 230 LPLYESL-ESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEE-IDHLLAIESMSQLLLVTAEQNLFL 307 (775)
T ss_pred echhhhe-eeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchh-hhcceeccccCceEEEEccceEEE
Confidence 3222221 22333333 45778888889999999 777776544322 211 111222334567888888999999
Q ss_pred EeCCCCceeeEEec-CCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecCcccccccccccceeeeeeec
Q 002615 784 FEQESGNLLWEYSV-GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLE 862 (900)
Q Consensus 784 ~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 862 (900)
||.+++++.-.+-- +..+...-+.. +.+..++++++.+.+++|+..+-. . + .+.
T Consensus 308 ~d~~~l~i~k~ivG~ndEI~Dm~~lG-----------~e~~~laVATNs~~lr~y~~~~~~-c----------~---ii~ 362 (775)
T KOG0319|consen 308 YDEDELTIVKQIVGYNDEILDMKFLG-----------PEESHLAVATNSPELRLYTLPTSY-C----------Q---IIP 362 (775)
T ss_pred EEccccEEehhhcCCchhheeeeecC-----------CccceEEEEeCCCceEEEecCCCc-e----------E---EEe
Confidence 99988887654322 22333333322 237899999999999999776321 1 1 223
Q ss_pred cCCccccCcee-eCC-EEEEeeeCCeEEEEEcc
Q 002615 863 LQGDIFSSPVM-IGG-RVFVGCRDDYIYCIALE 893 (900)
Q Consensus 863 l~~~~~ss~~~-~~~-~l~vg~~dg~l~~ld~~ 893 (900)
-+.+.+-+..+ ..| .|..|+.|..+..|.++
T Consensus 363 GH~e~vlSL~~~~~g~llat~sKD~svilWr~~ 395 (775)
T KOG0319|consen 363 GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLN 395 (775)
T ss_pred CchhheeeeeecccCcEEEEecCCceEEEEEec
Confidence 33445555543 344 66778899999999663
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.8e-11 Score=112.18 Aligned_cols=270 Identities=12% Similarity=0.078 Sum_probs=180.3
Q ss_pred ecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCcccc
Q 002615 596 LADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFG 675 (900)
Q Consensus 596 ~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~ 675 (900)
.++|-+++..|.||.-..-+-+||.-+-+|..+...+....+..+.-.-..++.|=+-..||.-+|..+..+.. ..+.-
T Consensus 26 tp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~h-khivk 104 (334)
T KOG0278|consen 26 TPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEH-KHIVK 104 (334)
T ss_pred CCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhh-hheee
Confidence 35555677777787766666677776666665544444444433222233345555667788888887776653 34555
Q ss_pred CceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecC
Q 002615 676 SPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT 754 (900)
Q Consensus 676 ~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~ 754 (900)
+.+++.+.+.|+.|+.+..+..||.+.. -.+.-.+..+...+.....+..+..++..+.++.|..|| .+|+++-++..
T Consensus 105 ~~af~~ds~~lltgg~ekllrvfdln~p-~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~ 183 (334)
T KOG0278|consen 105 AVAFSQDSNYLLTGGQEKLLRVFDLNRP-KAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF 183 (334)
T ss_pred eEEecccchhhhccchHHHhhhhhccCC-CCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec
Confidence 5666666788999998888888887752 223333333333344555666778888889999999999 99999988877
Q ss_pred CCceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcE
Q 002615 755 GGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSI 834 (900)
Q Consensus 755 ~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v 834 (900)
..++.+.- ...+|.++..++.+.|..||+++-.++-.++.+.++.+.... +..+.+++|.+++.+
T Consensus 184 ~s~VtSlE---vs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~------------P~k~~fVaGged~~~ 248 (334)
T KOG0278|consen 184 NSPVTSLE---VSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLH------------PKKEFFVAGGEDFKV 248 (334)
T ss_pred CCCCccee---eccCCCEEEEecCceeEEeccccccceeeccCcccccccccc------------CCCceEEecCcceEE
Confidence 77665544 334678888888999999999998888888888777554333 336888889999999
Q ss_pred EEEEeecCcccccccccccceeeeeee-c-cCCccccCceeeCCEEEE-eeeCCeEEEEEcccc
Q 002615 835 HILRVNLDVTGKENQSKDHMVQEFAKL-E-LQGDIFSSPVMIGGRVFV-GCRDDYIYCIALETQ 895 (900)
Q Consensus 835 ~~~d~~~~~~~~~~~~~~~~~~~~~~~-~-l~~~~~ss~~~~~~~l~v-g~~dg~l~~ld~~tg 895 (900)
|.||..+| ..+..+ + -+|.+-.--..-+|.+|. |+.||.|..|-...+
T Consensus 249 ~kfDy~Tg-------------eEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 249 YKFDYNTG-------------EEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred EEEeccCC-------------ceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 99999987 333332 1 122211100012566665 888999999965443
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.8e-10 Score=113.98 Aligned_cols=271 Identities=13% Similarity=0.079 Sum_probs=169.4
Q ss_pred CCceEEEEecCCCeEEEEECCC-CcE--EEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecC-Cc
Q 002615 555 DSDIYLFVGSHSHKFICADAKR-SSV--LWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC-GE 630 (900)
Q Consensus 555 ~~~~~v~igs~~g~l~~~d~~t-G~~--~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~-~~ 630 (900)
..+.++..+|.|.+...|+... +++ ..+...+.....-...++|+.++++...+..+..||..+|.....+..+ +.
T Consensus 234 ~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~ 313 (519)
T KOG0293|consen 234 HNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGF 313 (519)
T ss_pred CCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCC
Confidence 3566777777776555454322 222 2222223333345678899889888888888999999999998777655 44
Q ss_pred eeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEE--EeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceee
Q 002615 631 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCV--YKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTL 708 (900)
Q Consensus 631 ~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~--w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~ 708 (900)
..++.++.+++..+++|+.|++++.||.. |+.+ |+..-. +-....++..++..++..+.+..+..|+..+. ...
T Consensus 314 S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~-~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~--~dr 389 (519)
T KOG0293|consen 314 SVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRD-PKVHDLAITYDGKYVLLVTVDKKIRLYNREAR--VDR 389 (519)
T ss_pred CcceeEEccCCceeEecCCCCcEEEecCC-cchhhccccccc-ceeEEEEEcCCCcEEEEEecccceeeechhhh--hhh
Confidence 45666788888889999999999999965 4443 432111 22333445555678888888888998887651 111
Q ss_pred eEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCC--CceeccccccccCCCeEEEEeeCCeEEEEe
Q 002615 709 WLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG--GPIFAGPCTSFALPSQVLICSRNGSIYSFE 785 (900)
Q Consensus 709 w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~--~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d 785 (900)
-..... ..+.+..++.++..+.+.-.+..+..|| ...+++-++... +...--.|..-.++..|..|+.|+.||.|+
T Consensus 390 ~lise~-~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWh 468 (519)
T KOG0293|consen 390 GLISEE-QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWH 468 (519)
T ss_pred cccccc-CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEE
Confidence 111122 2235566666666666666677788887 544443333211 111111122233345788899999999999
Q ss_pred CCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEee
Q 002615 786 QESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 840 (900)
Q Consensus 786 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~ 840 (900)
..+|+++-...-+.......... ..+...++.+++||+|++|.+.
T Consensus 469 r~sgkll~~LsGHs~~vNcVswN----------P~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 469 RISGKLLAVLSGHSKTVNCVSWN----------PADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred ccCCceeEeecCCcceeeEEecC----------CCCHHHhhccCCCCeEEEecCC
Confidence 99999988776555332221111 1124567888999999999654
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.8e-10 Score=112.32 Aligned_cols=270 Identities=13% Similarity=0.049 Sum_probs=172.1
Q ss_pred eeEecCCCEEEEEeeCCEEEEEECC-CCc--EEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeecc
Q 002615 593 AAVLADFSQVVVGCYKGKIYFLDYL-TGD--IYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC 669 (900)
Q Consensus 593 ~~~~~~~~~i~vg~~dg~l~~~d~~-tG~--~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~ 669 (900)
..++.+|.++..++.|.+...|... +++ +..+...+...++...++++++++++++.+..+..||..+|.+...+..
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~ 309 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS 309 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhccc
Confidence 3556666777777777665555432 222 2333434445556667888889988888888899999999999887766
Q ss_pred C-CccccCceeeccCCEEEEEeCCCcEEEEEcCCCCcee--eeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CC
Q 002615 670 G-GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHT--LWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SS 745 (900)
Q Consensus 670 ~-~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~--~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~ 745 (900)
+ +...++.+..+++-.+++|+.++.++.||.+ |.. .|+.... +.....++..++..++..+.|..+..++ .+
T Consensus 310 ~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD---gn~~~~W~gvr~-~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~ 385 (519)
T KOG0293|consen 310 GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD---GNILGNWEGVRD-PKVHDLAITYDGKYVLLVTVDKKIRLYNREA 385 (519)
T ss_pred CcCCCcceeEEccCCceeEecCCCCcEEEecCC---cchhhccccccc-ceeEEEEEcCCCcEEEEEecccceeeechhh
Confidence 5 3444555666667889999999999999987 454 3544322 4446677788899999999999999998 43
Q ss_pred CCEEeeecCCCceeccccccccCCCeEE-EEeeCCeEEEEeCCCCceeeEEecCCc---eecccccccccccccccccCC
Q 002615 746 GSIIWRCRTGGPIFAGPCTSFALPSQVL-ICSRNGSIYSFEQESGNLLWEYSVGDP---ITASAYIDEHLQLKLESCLSI 821 (900)
Q Consensus 746 G~~~w~~~~~~~~~~~~~~~~~~~~~l~-~g~~dg~l~~~d~~tG~~~w~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 821 (900)
-..+-..+...++.+.. ...++.+. +.-.+..+..||.+..+++-+|.-+.. +..+-|-. .+
T Consensus 386 ~~dr~lise~~~its~~---iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg-----------~~ 451 (519)
T KOG0293|consen 386 RVDRGLISEEQPITSFS---ISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGG-----------GN 451 (519)
T ss_pred hhhhccccccCceeEEE---EcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCC-----------CC
Confidence 32222233444443332 22344444 444577888898887666555432221 11111111 12
Q ss_pred CeEEEEEcCCCcEEEEEeecCcccccccccccceeeeeeeccCCc---ccc-CceeeCCEEEEeeeCCeEEEEEccc
Q 002615 822 DRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGD---IFS-SPVMIGGRVFVGCRDDYIYCIALET 894 (900)
Q Consensus 822 ~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~s-s~~~~~~~l~vg~~dg~l~~ld~~t 894 (900)
+.++..|++|++||+|+..+| +++....-+.. .++ .|. +...+-.++.||.+.+|.+..
T Consensus 452 ~~fiaSGSED~kvyIWhr~sg-------------kll~~LsGHs~~vNcVswNP~-~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 452 DKFIASGSEDSKVYIWHRISG-------------KLLAVLSGHSKTVNCVSWNPA-DPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cceEEecCCCceEEEEEccCC-------------ceeEeecCCcceeeEEecCCC-CHHHhhccCCCCeEEEecCCc
Confidence 579999999999999999877 44433322221 111 221 234566778899999998753
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.6e-11 Score=118.33 Aligned_cols=222 Identities=17% Similarity=0.134 Sum_probs=153.1
Q ss_pred CCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceee
Q 002615 641 RQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFAS 720 (900)
Q Consensus 641 ~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s 720 (900)
++.++.|..|.++..||.++-.++.+...+ .-+..++.-....++.|+.+.++..||.++ |+++-.+-.+-. ..
T Consensus 207 D~kiVSGlrDnTikiWD~n~~~c~~~L~GH--tGSVLCLqyd~rviisGSSDsTvrvWDv~t--ge~l~tlihHce--aV 280 (499)
T KOG0281|consen 207 DEKIVSGLRDNTIKIWDKNSLECLKILTGH--TGSVLCLQYDERVIVSGSSDSTVRVWDVNT--GEPLNTLIHHCE--AV 280 (499)
T ss_pred chhhhcccccCceEEeccccHHHHHhhhcC--CCcEEeeeccceEEEecCCCceEEEEeccC--CchhhHHhhhcc--ee
Confidence 466778889999999998887776655433 223345555456788899999999999998 887765433332 23
Q ss_pred eeeeeCCCEEEEEeecCcEEEEC-CCCC-E-EeeecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEEec
Q 002615 721 LCITSANRHVICCLVDGHVVALD-SSGS-I-IWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSV 797 (900)
Q Consensus 721 ~~~~~~~~~i~~~~~~g~v~~~d-~~G~-~-~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~ 797 (900)
..+...+++++.++.|..+.+|| ..-. + +-+.-.+ ...+..++ ...+..|+.++.|.++..|+..|++++.++..
T Consensus 281 Lhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvG-HrAaVNvV-dfd~kyIVsASgDRTikvW~~st~efvRtl~g 358 (499)
T KOG0281|consen 281 LHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVG-HRAAVNVV-DFDDKYIVSASGDRTIKVWSTSTCEFVRTLNG 358 (499)
T ss_pred EEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhh-hhhheeee-ccccceEEEecCCceEEEEeccceeeehhhhc
Confidence 34556789999999999898888 3221 1 1111111 11122222 22345788888999999999999999887765
Q ss_pred CCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecCcccccccccccceeeeeeeccCCccccCceeeCCE
Q 002615 798 GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGR 877 (900)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~~~~~ 877 (900)
+....+.. ...+.++..|+.|.+|++||...|. .+...+-+.+.+...-+++.+
T Consensus 359 HkRGIACl-------------QYr~rlvVSGSSDntIRlwdi~~G~-------------cLRvLeGHEeLvRciRFd~kr 412 (499)
T KOG0281|consen 359 HKRGIACL-------------QYRDRLVVSGSSDNTIRLWDIECGA-------------CLRVLEGHEELVRCIRFDNKR 412 (499)
T ss_pred ccccceeh-------------hccCeEEEecCCCceEEEEeccccH-------------HHHHHhchHHhhhheeecCce
Confidence 54433322 2238899999999999999999873 333333344556666678889
Q ss_pred EEEeeeCCeEEEEEccccc
Q 002615 878 VFVGCRDDYIYCIALETQH 896 (900)
Q Consensus 878 l~vg~~dg~l~~ld~~tg~ 896 (900)
++.|.+||.+..||+.++.
T Consensus 413 IVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 413 IVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred eeeccccceEEEEeccccc
Confidence 9999999999999998764
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-09 Score=114.55 Aligned_cols=243 Identities=13% Similarity=0.087 Sum_probs=169.2
Q ss_pred cccccccceEEeeCCceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcE
Q 002615 542 ESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDI 621 (900)
Q Consensus 542 ~~~v~~sp~v~~~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~ 621 (900)
-+|||--|+ ...+..+-.+|.+..||.+|-.....+...+....++.+....+.+++|+.|..|..||..|++.
T Consensus 16 VKsVd~HPt------ePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek 89 (794)
T KOG0276|consen 16 VKSVDFHPT------EPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK 89 (794)
T ss_pred eeeeecCCC------CceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccccee
Confidence 356666664 44556666789999999998888777776654444555666667999999999999999999999
Q ss_pred EEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCC-eEEEeeccCCccccCceeecc-CCEEEEEeCCCcEEEEE
Q 002615 622 YWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY-RCVYKLPCGGSIFGSPAIDEV-HDVLYVASTSGRLTAIS 699 (900)
Q Consensus 622 ~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g-~~~w~~~~~~~~~~~~~~~~~-~~~l~v~t~~g~l~~~~ 699 (900)
+..|..+....-+.++.+..-.++++|+|-.|.+||-+.+ .+...+..+.......++.+. .+....++.|+++..|+
T Consensus 90 V~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWs 169 (794)
T KOG0276|consen 90 VKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWS 169 (794)
T ss_pred eEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEE
Confidence 9999998887777788888899999999999999997654 344455555555555666553 35577788899999998
Q ss_pred cCCCCceeeeEeecCCcceeeeeeeeC--CCEEEEEeecCcEEEEC-CCCCEEeeecCCCceeccccccccCCCeEEEEe
Q 002615 700 VKALPFHTLWLHELEVPAFASLCITSA--NRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICS 776 (900)
Q Consensus 700 ~~~~~g~~~w~~~~~~~~~~s~~~~~~--~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~ 776 (900)
+.. -.+..+.+.+............ .-+++.|+.|-.+-+|| ++...+-+......-.+..+. ...--.+..|+
T Consensus 170 lgs--~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~f-hp~lpiiisgs 246 (794)
T KOG0276|consen 170 LGS--PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFF-HPELPIIISGS 246 (794)
T ss_pred cCC--CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEe-cCCCcEEEEec
Confidence 765 4555566555544444443322 23788888888888888 766555443321111111111 11112577889
Q ss_pred eCCeEEEEeCCCCceee
Q 002615 777 RNGSIYSFEQESGNLLW 793 (900)
Q Consensus 777 ~dg~l~~~d~~tG~~~w 793 (900)
.||++..|+..|-++.-
T Consensus 247 EDGTvriWhs~Ty~lE~ 263 (794)
T KOG0276|consen 247 EDGTVRIWNSKTYKLEK 263 (794)
T ss_pred CCccEEEecCcceehhh
Confidence 99999999988765443
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.9e-09 Score=102.80 Aligned_cols=272 Identities=12% Similarity=0.048 Sum_probs=172.9
Q ss_pred eceeEecCCCEEEEEeeCCEEEEEEC-CCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeecc
Q 002615 591 CSAAVLADFSQVVVGCYKGKIYFLDY-LTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC 669 (900)
Q Consensus 591 ~~~~~~~~~~~i~vg~~dg~l~~~d~-~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~ 669 (900)
..+.+.++|..+..|++|..|+.|+. .+.+-.|..+.+...+.-.-+..++..|+.++.|.+++.||.++|+++.+++.
T Consensus 51 ~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~ 130 (338)
T KOG0265|consen 51 YTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKG 130 (338)
T ss_pred EEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhcc
Confidence 35677888888999999999999993 33445677776655544445556778899999999999999999999999998
Q ss_pred CCccccCceeec-cCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCC
Q 002615 670 GGSIFGSPAIDE-VHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGS 747 (900)
Q Consensus 670 ~~~~~~~~~~~~-~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~ 747 (900)
+..+..+..... ....|..++.+|++..||.+. ...+..+....+. .+..+....+.+++|..|+.|-.|| ..+.
T Consensus 131 h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~--k~~~~t~~~kyql-tAv~f~d~s~qv~sggIdn~ikvWd~r~~d 207 (338)
T KOG0265|consen 131 HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK--KEAIKTFENKYQL-TAVGFKDTSDQVISGGIDNDIKVWDLRKND 207 (338)
T ss_pred ccceeeecCccccCCeEEEecCCCceEEEEeecc--cchhhccccceeE-EEEEecccccceeeccccCceeeeccccCc
Confidence 877665544322 123456678899999999885 3333333222222 4555666678899999999999999 7777
Q ss_pred EEeeecCCC-ceeccccccccCCCeEEEEeeCCeEEEEeCCCCce----eeEEecCCceecccccccccccccccccCCC
Q 002615 748 IIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNL----LWEYSVGDPITASAYIDEHLQLKLESCLSID 822 (900)
Q Consensus 748 ~~w~~~~~~-~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~----~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (900)
..+..+... ++.... . .-.+..+..-+.|.++..||..--.. +-.+. ++ ...-..++...+..+.+
T Consensus 208 ~~~~lsGh~DtIt~ls-l-s~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~-g~------~hnfeknlL~cswsp~~ 278 (338)
T KOG0265|consen 208 GLYTLSGHADTITGLS-L-SRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQ-GH------IHNFEKNLLKCSWSPNG 278 (338)
T ss_pred ceEEeecccCceeeEE-e-ccCCCccccccccceEEEEEecccCCCCceEEEee-cc------hhhhhhhcceeeccCCC
Confidence 776655332 222211 1 11233455556788899988643111 11111 10 00011122233445568
Q ss_pred eEEEEEcCCCcEEEEEeecCcccccccccccceeeeeeeccCCccccC--cee--eCCEEEEeeeCCeEEE
Q 002615 823 RLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSS--PVM--IGGRVFVGCRDDYIYC 889 (900)
Q Consensus 823 ~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss--~~~--~~~~l~vg~~dg~l~~ 889 (900)
..+-+|+.|..+|+||..+. .-.|++||..-+- ..+ ...-|..++.|..||.
T Consensus 279 ~~i~ags~dr~vyvwd~~~r---------------~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 279 TKITAGSADRFVYVWDTTSR---------------RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred CccccccccceEEEeecccc---------------cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 88999999999999998743 2345677643221 111 2345555666766664
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.8e-09 Score=115.69 Aligned_cols=299 Identities=11% Similarity=0.082 Sum_probs=199.6
Q ss_pred CceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeee
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 635 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 635 (900)
..-.|.++-|+|.|..||-.-|.++-++.-++...-...+.+.+...+.|+.|-.|.+|+-++.+.+.+...+-...-..
T Consensus 20 ~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~ 99 (1202)
T KOG0292|consen 20 KRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTV 99 (1202)
T ss_pred CCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEe
Confidence 44556777899999999999999998888777666678888888888888899999999999988887766655555555
Q ss_pred eEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecC-
Q 002615 636 VVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE- 714 (900)
Q Consensus 636 ~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~- 714 (900)
.+....-.|+.+|+|.+|..||-.+++++-....+.....+..+.+.++.|..++.|.++..||+.. -..-....+
T Consensus 100 ~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisG---LRkk~~~pg~ 176 (1202)
T KOG0292|consen 100 FFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISG---LRKKNKAPGS 176 (1202)
T ss_pred eccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecc---hhccCCCCCC
Confidence 6666667788999999999999999999988887776666666777678899999999999999752 111111000
Q ss_pred -----------Ccce------------------eeeeeeeCCCEEEEEeecCcEEEECCCCCEEeeecCCCceec--ccc
Q 002615 715 -----------VPAF------------------ASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFA--GPC 763 (900)
Q Consensus 715 -----------~~~~------------------~s~~~~~~~~~i~~~~~~g~v~~~d~~G~~~w~~~~~~~~~~--~~~ 763 (900)
...+ .-.++.+..-.++.|+.|..|-+|.-+-...|+..+-...+. +.+
T Consensus 177 ~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssv 256 (1202)
T KOG0292|consen 177 LEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSV 256 (1202)
T ss_pred chhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceE
Confidence 0011 111222223456667777777777733345687764322111 111
Q ss_pred ccccCCCeEEEEeeCCeEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecCc
Q 002615 764 TSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDV 843 (900)
Q Consensus 764 ~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~ 843 (900)
+.....+.|+..+.|+.+.+||.+..+-+-++.-.+.-+-...... ...++++..|+++.+|..+-.
T Consensus 257 lfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP------------~lNLfAAgHDsGm~VFkleRE- 323 (1202)
T KOG0292|consen 257 LFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHP------------ELNLFAAGHDSGMIVFKLERE- 323 (1202)
T ss_pred EecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecC------------CcceeeeecCCceEEEEEccc-
Confidence 2222345677788999999999988777766655444322222222 345666667777888866511
Q ss_pred ccccccccccceeeeeeeccCCccccCceeeCCEEEEeeeCCeEEEEEcccc
Q 002615 844 TGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALETQ 895 (900)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~~~~~l~vg~~dg~l~~ld~~tg 895 (900)
. ...++.++.||..- +..|+.+|+.|.
T Consensus 324 --------------r----------pa~~v~~n~LfYvk-d~~i~~~d~~t~ 350 (1202)
T KOG0292|consen 324 --------------R----------PAYAVNGNGLFYVK-DRFIRSYDLRTQ 350 (1202)
T ss_pred --------------C----------ceEEEcCCEEEEEc-cceEEeeecccc
Confidence 0 01233555555554 677888887763
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.9e-09 Score=102.51 Aligned_cols=266 Identities=13% Similarity=0.123 Sum_probs=169.8
Q ss_pred EEEEecCCCeEEEEECCC------CcE------EEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEe
Q 002615 559 YLFVGSHSHKFICADAKR------SSV------LWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQ 626 (900)
Q Consensus 559 ~v~igs~~g~l~~~d~~t------G~~------~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~ 626 (900)
.+++|+..+.|+.+++.- ..+ +|.+..+..... ++..++.+++.|+.|.+|..||..+.+.+-..-
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sit--avAVs~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSIT--ALAVSGPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeecccccccccccee--EEEecceeEeccCCCCcEEEEeccchhhhccee
Confidence 578999999999987642 122 334444433222 344456689999999999999988876655544
Q ss_pred cCCceeeeeeEeCCC--CEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCC
Q 002615 627 TCGEVKCQPVVDAPR--QLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALP 704 (900)
Q Consensus 627 ~~~~~~~~~~~~~~~--~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~ 704 (900)
.+........+.... ..++.|+.||.+.+|+...-+++-.++.+..-.....+.+.+..-+.-..|+.+..||+-.
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~-- 158 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR-- 158 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhc--
Confidence 444444444444432 3789999999999999888777666666544466666777555555566788999999887
Q ss_pred ceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCCceeccccccccCCCeEEEEeeCCeEEE
Q 002615 705 FHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYS 783 (900)
Q Consensus 705 g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~ 783 (900)
|+.-......... ......+.+++++++..+ .|-+|. .+-.+.-+......+.+ +.....+.+.+|..|+.+..
T Consensus 159 Gr~a~v~~L~~~a-t~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~---~~~l~~~~L~vG~d~~~i~~ 233 (362)
T KOG0294|consen 159 GRVAFVLNLKNKA-TLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILC---ATFLDGSELLVGGDNEWISL 233 (362)
T ss_pred CccceeeccCCcc-eeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcccccee---eeecCCceEEEecCCceEEE
Confidence 6655444443322 223445566666666543 344443 22222212222222333 33566788999999999999
Q ss_pred EeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecC
Q 002615 784 FEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 842 (900)
Q Consensus 784 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~ 842 (900)
+|.+++.....+..+..-+-..+...+ ....++..++.||.|.+||.+..
T Consensus 234 ~D~ds~~~~~~~~AH~~RVK~i~~~~~---------~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 234 KDTDSDTPLTEFLAHENRVKDIASYTN---------PEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eccCCCccceeeecchhheeeeEEEec---------CCceEEEEeccCceEEEEEcccc
Confidence 999888877777665543333322110 11568889999999999998744
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-09 Score=111.63 Aligned_cols=261 Identities=13% Similarity=0.099 Sum_probs=169.2
Q ss_pred ecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCC
Q 002615 563 GSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQ 642 (900)
Q Consensus 563 gs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~ 642 (900)
.+++-++..|+..+-..+..+.--....+++.+-.||..+.+|...|.+..||.++..++-.+..+....-..-+.+.++
T Consensus 44 Vt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~ 123 (487)
T KOG0310|consen 44 VTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDN 123 (487)
T ss_pred EecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCC
Confidence 34456788999887666544333334456888888988888899999999999666444444444433222223333444
Q ss_pred -EEEEecCCCeEEEEECCCCeEEEeeccCCc-cccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceee
Q 002615 643 -LIWCGSHDHNLYALDFRNYRCVYKLPCGGS-IFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFAS 720 (900)
Q Consensus 643 -~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~-~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s 720 (900)
.+..|++|+.+..||..+..+......+.. +.+..+.+.++..++.|+.||.+..||.+..+ ..+.+++.+.|+ .+
T Consensus 124 t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pV-e~ 201 (487)
T KOG0310|consen 124 TMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPV-ES 201 (487)
T ss_pred eEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEecCCCce-ee
Confidence 455677788888899988876433333332 33333344444578889999999999998733 555566655554 45
Q ss_pred eeeeeCCCEEEEEeecCcEEEEC-CCCC-EEeeec-CCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEEec
Q 002615 721 LCITSANRHVICCLVDGHVVALD-SSGS-IIWRCR-TGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSV 797 (900)
Q Consensus 721 ~~~~~~~~~i~~~~~~g~v~~~d-~~G~-~~w~~~-~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~ 797 (900)
....+.+..+..++ ...+-+|| .+|. .+.... ....+.+. +... .+..|+.++-|+++.+||..+-+++.....
T Consensus 202 vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL-~l~s-~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~ 278 (487)
T KOG0310|consen 202 VLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCL-RLAS-DSTRLLSGSLDRHVKVFDTTNYKVVHSWKY 278 (487)
T ss_pred EEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEE-Eeec-CCceEeecccccceEEEEccceEEEEeeec
Confidence 55555555555554 45788999 5454 333322 12222222 1111 346799999999999999888888877777
Q ss_pred CCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEee
Q 002615 798 GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 840 (900)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~ 840 (900)
++++.+....++ +..+++|-.+|.+.+-+..
T Consensus 279 ~~pvLsiavs~d------------d~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 279 PGPVLSIAVSPD------------DQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred ccceeeEEecCC------------CceEEEecccceeeeehhh
Confidence 888766655443 7899999999987766443
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.6e-10 Score=115.77 Aligned_cols=261 Identities=15% Similarity=0.170 Sum_probs=175.4
Q ss_pred ccccccceeeeeecCCccccccccccccccccccccceEEeeCCceEEEEecCCCeEEEEECCCCcEEEEEecCCce--e
Q 002615 513 GNDLCGVNWSLEVPRNKRGFIQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRI--E 590 (900)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~v~~sp~v~~~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~--~ 590 (900)
....|-+.|++..|.++...-++ =-.+-+.-+.+..+. .++..+++|..-.+|..||+.+-...-+..+...- -
T Consensus 437 gGkgcVKVWdis~pg~k~PvsqL-dcl~rdnyiRSckL~---pdgrtLivGGeastlsiWDLAapTprikaeltssapaC 512 (705)
T KOG0639|consen 437 GGKGCVKVWDISQPGNKSPVSQL-DCLNRDNYIRSCKLL---PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 512 (705)
T ss_pred cCCCeEEEeeccCCCCCCccccc-cccCcccceeeeEec---CCCceEEeccccceeeeeeccCCCcchhhhcCCcchhh
Confidence 35567778888877554321111 000112223322222 35678889988888999999876654443333321 1
Q ss_pred eceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccC
Q 002615 591 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG 670 (900)
Q Consensus 591 ~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~ 670 (900)
....+++|.+..|..|.||.|..||+.+...+-+|+.+..-.++..+..++.+||+|+-|.+|.|||..+|..+.+.+..
T Consensus 513 yALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~ 592 (705)
T KOG0639|consen 513 YALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS 592 (705)
T ss_pred hhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhh
Confidence 12346778888999999999999999999888888876665666677777889999999999999999999888877776
Q ss_pred CccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEE
Q 002615 671 GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSII 749 (900)
Q Consensus 671 ~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~ 749 (900)
..+++--... .++.|.+|-.++.+..+... +...++...+...+.+..+..-+...+..+.|.-+.+|. .-|.-+
T Consensus 593 SQIfSLg~cP-~~dWlavGMens~vevlh~s---kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasi 668 (705)
T KOG0639|consen 593 SQIFSLGYCP-TGDWLAVGMENSNVEVLHTS---KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 668 (705)
T ss_pred hhheecccCC-CccceeeecccCcEEEEecC---CccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccce
Confidence 6666544333 36889999999999888755 555555555555555555655566666666788888888 778888
Q ss_pred eeecCCCceeccccccccCCCeEEEEeeCCeEEE
Q 002615 750 WRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYS 783 (900)
Q Consensus 750 w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~ 783 (900)
++.+....+.+... ..++..|+.|+.|..-.+
T Consensus 669 FqskE~SsVlsCDI--S~ddkyIVTGSGdkkATV 700 (705)
T KOG0639|consen 669 FQSKESSSVLSCDI--SFDDKYIVTGSGDKKATV 700 (705)
T ss_pred eeccccCcceeeee--ccCceEEEecCCCcceEE
Confidence 88776666655441 223445666666644333
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.5e-09 Score=101.42 Aligned_cols=238 Identities=10% Similarity=0.063 Sum_probs=147.5
Q ss_pred eeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeecc
Q 002615 590 ECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC 669 (900)
Q Consensus 590 ~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~ 669 (900)
.++..+++..+.+.++++||.|..||....+.+-.+..+.++..+...+ ...+++|+-||.|..+|..+++....-..
T Consensus 16 IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~~~~igth 93 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGNEDQIGTH 93 (323)
T ss_pred eeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC--CceEEEeccCceEEEEEecCCcceeeccC
Confidence 3466677777889999999999999988877776777777766654433 46799999999999999999876543333
Q ss_pred CCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCE
Q 002615 670 GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSI 748 (900)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~ 748 (900)
... ..+.......+.++.|++++.+..||+.. -...-..+....+ .+....++++++|+.+..+..|| .+-..
T Consensus 94 ~~~-i~ci~~~~~~~~vIsgsWD~~ik~wD~R~--~~~~~~~d~~kkV---y~~~v~g~~LvVg~~~r~v~iyDLRn~~~ 167 (323)
T KOG1036|consen 94 DEG-IRCIEYSYEVGCVISGSWDKTIKFWDPRN--KVVVGTFDQGKKV---YCMDVSGNRLVVGTSDRKVLIYDLRNLDE 167 (323)
T ss_pred CCc-eEEEEeeccCCeEEEcccCccEEEEeccc--cccccccccCceE---EEEeccCCEEEEeecCceEEEEEcccccc
Confidence 333 33333333458899999999999999874 2222222333322 23445688999999999999999 54443
Q ss_pred EeeecCCCceecccccccc-CCCeEEEEeeCCeEEEEeCCCC----ceeeEEecCCc-----eecccccccccccccccc
Q 002615 749 IWRCRTGGPIFAGPCTSFA-LPSQVLICSRNGSIYSFEQESG----NLLWEYSVGDP-----ITASAYIDEHLQLKLESC 818 (900)
Q Consensus 749 ~w~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~l~~~d~~tG----~~~w~~~~~~~-----~~~~~~~~~~~~~~~~~~ 818 (900)
-.+.....--+..-|+... ...-.++++-+|.++.=..+.- +..+.++.+-. -..-|.- . ...
T Consensus 168 ~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVN--a-----i~F 240 (323)
T KOG1036|consen 168 PFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVN--A-----IAF 240 (323)
T ss_pred hhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEec--e-----eEe
Confidence 3332222111112222221 2345667788998876443333 22333332211 0000000 0 001
Q ss_pred cCCCeEEEEEcCCCcEEEEEeecC
Q 002615 819 LSIDRLVCICTSSGSIHILRVNLD 842 (900)
Q Consensus 819 ~~~~~~l~~g~~~G~v~~~d~~~~ 842 (900)
.+.-+.++.|+.||.|.+||..+.
T Consensus 241 hp~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 241 HPIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred ccccceEEecCCCceEEEccCcch
Confidence 122567999999999999999865
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.4e-10 Score=105.20 Aligned_cols=267 Identities=12% Similarity=0.129 Sum_probs=174.8
Q ss_pred ceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeee
Q 002615 557 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPV 636 (900)
Q Consensus 557 ~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~ 636 (900)
+-+++.++.|+.=..-+.+||.-+-.+..+.....++++..+.-....++.|-+-..||+-||..+..|+.. .++-...
T Consensus 29 g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hk-hivk~~a 107 (334)
T KOG0278|consen 29 GYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHK-HIVKAVA 107 (334)
T ss_pred ceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhh-heeeeEE
Confidence 445556666665555566677644455555444445555555434455556666778999999998887654 4445556
Q ss_pred EeCCCCEEEEecCCCeEEEEECCCCeEE-Eeec-cCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecC
Q 002615 637 VDAPRQLIWCGSHDHNLYALDFRNYRCV-YKLP-CGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE 714 (900)
Q Consensus 637 ~~~~~~~i~~gs~dg~l~~~d~~~g~~~-w~~~-~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~ 714 (900)
++.+.++|++|+.+.-|..||.+.-+.- -.+. ..+.+.....+.. +..++..+.++.+..||..+ |+.+.+....
T Consensus 108 f~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~e-D~~iLSSadd~tVRLWD~rT--gt~v~sL~~~ 184 (334)
T KOG0278|consen 108 FSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHE-DKCILSSADDKTVRLWDHRT--GTEVQSLEFN 184 (334)
T ss_pred ecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEecc-CceEEeeccCCceEEEEecc--CcEEEEEecC
Confidence 7778889999999988888887642211 0111 1223333222332 46777778999999999998 9999888887
Q ss_pred CcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCceee
Q 002615 715 VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLW 793 (900)
Q Consensus 715 ~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w 793 (900)
.++ .+..+..+ +.++.-.+.+.|..+| .+-.++-.++.+-.+-+.. . .-..+..++|..|+.+|.||..||+.+-
T Consensus 185 s~V-tSlEvs~d-G~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SAS-L-~P~k~~fVaGged~~~~kfDy~TgeEi~ 260 (334)
T KOG0278|consen 185 SPV-TSLEVSQD-GRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESAS-L-HPKKEFFVAGGEDFKVYKFDYNTGEEIG 260 (334)
T ss_pred CCC-cceeeccC-CCEEEEecCceeEEeccccccceeeccCcccccccc-c-cCCCceEEecCcceEEEEEeccCCceee
Confidence 765 45555544 4555555778899999 6666666666555544332 1 1123567778889999999999998876
Q ss_pred EEe--cCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecCc
Q 002615 794 EYS--VGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDV 843 (900)
Q Consensus 794 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~ 843 (900)
.+. ..+++.+.-+. +++....+|+.||.|++|....++
T Consensus 261 ~~nkgh~gpVhcVrFS------------PdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 261 SYNKGHFGPVHCVRFS------------PDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ecccCCCCceEEEEEC------------CCCceeeccCCCceEEEEEecCCC
Confidence 542 23344333332 237788889999999999887653
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.5e-08 Score=106.04 Aligned_cols=313 Identities=13% Similarity=0.116 Sum_probs=176.8
Q ss_pred eEEEEe-cCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeee
Q 002615 558 IYLFVG-SHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPV 636 (900)
Q Consensus 558 ~~v~ig-s~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~ 636 (900)
+.+++. ..+|.|..+|..|.+++.++..+........+++|+.++|+.+.||.|..+|+.+++.+.++..+..... ..
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~-i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRG-IA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEE-EE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcce-EE
Confidence 344443 4578999999999999999988776655677889999999999999999999999999999988776554 45
Q ss_pred EeCCCCEEEEec-CCCeEEEEECCCCeEEEeeccCCccc-------cCceeeccCCEEEEE-eCCCcEEEEEcCCCCcee
Q 002615 637 VDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIF-------GSPAIDEVHDVLYVA-STSGRLTAISVKALPFHT 707 (900)
Q Consensus 637 ~~~~~~~i~~gs-~dg~l~~~d~~~g~~~w~~~~~~~~~-------~~~~~~~~~~~l~v~-t~~g~l~~~~~~~~~g~~ 707 (900)
++.++.+++++. ..+.+..+|.++.+++..+..++... +.....+.....++. -..+.+..+|..+ .+.
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d--~~~ 162 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD--PKN 162 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT--SSC
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc--ccc
Confidence 566778888876 46889999999999988776543211 111112212222222 2346677777655 232
Q ss_pred ee--EeecCCcceeeeeeeeCCCEEEEEe-ecCcEEEEC-CCCCEEeeecCCCceecccc--ccccCCCeEEEEeeCCeE
Q 002615 708 LW--LHELEVPAFASLCITSANRHVICCL-VDGHVVALD-SSGSIIWRCRTGGPIFAGPC--TSFALPSQVLICSRNGSI 781 (900)
Q Consensus 708 ~w--~~~~~~~~~~s~~~~~~~~~i~~~~-~~g~v~~~d-~~G~~~w~~~~~~~~~~~~~--~~~~~~~~l~~g~~dg~l 781 (900)
+. ..+.... .....+.+++.+++++. .+..+.++| .++++++....+......+. +.....+.+|..+..+..
T Consensus 163 ~~~~~i~~g~~-~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~ 241 (369)
T PF02239_consen 163 LKVTTIKVGRF-PHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF 241 (369)
T ss_dssp EEEEEEE--TT-EEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS
T ss_pred cceeeeccccc-ccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccce
Confidence 22 2222221 23344555566666653 456788899 88888877665432222111 112233456665544322
Q ss_pred E--E--------EeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEE----cCCCcEEEEEeecCccccc
Q 002615 782 Y--S--------FEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCIC----TSSGSIHILRVNLDVTGKE 847 (900)
Q Consensus 782 ~--~--------~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g----~~~G~v~~~d~~~~~~~~~ 847 (900)
. . ++..+-+++-+++..+...... ..+++.++|+. ...+.|.++|.++-
T Consensus 242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~------------thP~s~~vwvd~~~~~~~~~v~viD~~tl----- 304 (369)
T PF02239_consen 242 AIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIK------------THPDSRYVWVDTFLNPDADTVQVIDKKTL----- 304 (369)
T ss_dssp EEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--------------TT-SEEEEE-TT-SSHT-EEEEECCGT-----
T ss_pred ecccccCCccccchhhcCeEEEEEECCCCcceee------------cCCCCccEEeeccCCCCCceEEEEECcCc-----
Confidence 1 2 3333334444555443321111 13347899998 45678999998854
Q ss_pred ccccccceeeeeeecc-CCccccCcee--eCCEEEEeeeCCe--EEEEEcccccccc
Q 002615 848 NQSKDHMVQEFAKLEL-QGDIFSSPVM--IGGRVFVGCRDDY--IYCIALETQHLEE 899 (900)
Q Consensus 848 ~~~~~~~~~~~~~~~l-~~~~~ss~~~--~~~~l~vg~~dg~--l~~ld~~tg~~~~ 899 (900)
+....+.. ++.-.-.+-+ ++.++|+..+++. |..||.+|.++.+
T Consensus 305 --------~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 305 --------KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKK 353 (369)
T ss_dssp --------EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred --------ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence 22222211 1100111112 5789999988655 9999999988754
|
... |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3e-09 Score=112.19 Aligned_cols=237 Identities=10% Similarity=0.075 Sum_probs=168.7
Q ss_pred ceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCC
Q 002615 592 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG 671 (900)
Q Consensus 592 ~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~ 671 (900)
++-+.+....+..+-++|.+..||-+|-.....++..+...-+..+...++-|++|++|..|..|+..|++.+..+..+.
T Consensus 18 sVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~ 97 (794)
T KOG0276|consen 18 SVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHS 97 (794)
T ss_pred eeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccc
Confidence 44555666678888999999999999988888888765444444455567889999999999999999999999999998
Q ss_pred ccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeC-CCEEEEEeecCcEEEEC-CCCCEE
Q 002615 672 SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSA-NRHVICCLVDGHVVALD-SSGSII 749 (900)
Q Consensus 672 ~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~-~~~i~~~~~~g~v~~~d-~~G~~~ 749 (900)
..+.+.++.+..-.++.++.|-.+.+||-+. .-.....++.+.......++.+. .+.+..++-|+++-+|. .+....
T Consensus 98 DyIR~iavHPt~P~vLtsSDDm~iKlW~we~-~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n 176 (794)
T KOG0276|consen 98 DYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN-EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN 176 (794)
T ss_pred cceeeeeecCCCCeEEecCCccEEEEeeccC-ceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCc
Confidence 8888888888777888889899999998664 01122233334433344445443 45677778888888887 444444
Q ss_pred eeecCCCceeccccccccCCC---eEEEEeeCCeEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEE
Q 002615 750 WRCRTGGPIFAGPCTSFALPS---QVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVC 826 (900)
Q Consensus 750 w~~~~~~~~~~~~~~~~~~~~---~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 826 (900)
++++. .--...|+.....+ .++.|+.|..+.+||.+|.+.+-+.+-+...++..++... -..++
T Consensus 177 fTl~g--HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~-----------lpiii 243 (794)
T KOG0276|consen 177 FTLEG--HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPE-----------LPIII 243 (794)
T ss_pred eeeec--cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCC-----------CcEEE
Confidence 44442 22223333333333 7888999999999999998877666655544444444432 56899
Q ss_pred EEcCCCcEEEEEeecC
Q 002615 827 ICTSSGSIHILRVNLD 842 (900)
Q Consensus 827 ~g~~~G~v~~~d~~~~ 842 (900)
.|++||++++|+..+-
T Consensus 244 sgsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 244 SGSEDGTVRIWNSKTY 259 (794)
T ss_pred EecCCccEEEecCcce
Confidence 9999999999987653
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.9e-09 Score=106.66 Aligned_cols=273 Identities=11% Similarity=0.072 Sum_probs=170.0
Q ss_pred eCCceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCC-cEEEEEecCCcee
Q 002615 554 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTG-DIYWTFQTCGEVK 632 (900)
Q Consensus 554 ~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG-~~~w~~~~~~~~~ 632 (900)
+...-.++.+|.++.|++||..||++.-....+..-.....+...|.+++..+.|-.+..||.++- +.+.....+....
T Consensus 117 hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~v 196 (406)
T KOG0295|consen 117 HPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGV 196 (406)
T ss_pred ccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccce
Confidence 333455777888999999999999986555544433345667777766666666655677775542 1122222345666
Q ss_pred eeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCce------
Q 002615 633 CQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFH------ 706 (900)
Q Consensus 633 ~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~------ 706 (900)
+++.+-+.+..|..++.|.++..|+..+|.++..+..+....-...+..++-.+..++.+.++..|-..+..-+
T Consensus 197 S~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~h 276 (406)
T KOG0295|consen 197 SSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREH 276 (406)
T ss_pred eeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhcc
Confidence 77777777888999999999999999999999988776554333334432223334556778888887762111
Q ss_pred ------eeeEeecCCcceeeeeeee-CCCEEEEEeecCcEEEEC-CCCCEEeeecCCCceeccccccccCCCeEEEEeeC
Q 002615 707 ------TLWLHELEVPAFASLCITS-ANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRN 778 (900)
Q Consensus 707 ------~~w~~~~~~~~~~s~~~~~-~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~d 778 (900)
+.|......+......... .+..+..++.|+.|..+| .+|..+.++...++-.....+. ..+..|+.+..|
T Consensus 277 Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~-p~Gkyi~ScaDD 355 (406)
T KOG0295|consen 277 EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFS-PGGKYILSCADD 355 (406)
T ss_pred ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEc-CCCeEEEEEecC
Confidence 1121111111100000101 123677888999999999 9999988876544322222111 124567778889
Q ss_pred CeEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEE
Q 002615 779 GSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILR 838 (900)
Q Consensus 779 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d 838 (900)
+.|.+||.++++..-..+.+.....+.-+..+ ..++..|+-+-.+.+|.
T Consensus 356 ktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~-----------~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 356 KTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKT-----------APYVVTGSVDQTVKVWE 404 (406)
T ss_pred CcEEEEEeccceeeeccCCCcceeEEEecCCC-----------CceEEeccccceeeeee
Confidence 99999999999887666555554444333321 34677777666666664
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-08 Score=100.54 Aligned_cols=265 Identities=13% Similarity=0.092 Sum_probs=168.2
Q ss_pred ceEEEEecCCCeEEEEECCCCcEEEEEecCCc-eeeceeEecCC--CEEEEEeeCCEEEEEECCCCcEEE----EEecCC
Q 002615 557 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGR-IECSAAVLADF--SQVVVGCYKGKIYFLDYLTGDIYW----TFQTCG 629 (900)
Q Consensus 557 ~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~~~~--~~i~vg~~dg~l~~~d~~tG~~~w----~~~~~~ 629 (900)
.+.|+.|+.||.+..||.. |+.......+.. +...+-+..+. ..+++++.|.+|..|-.+.|+..- ....+.
T Consensus 115 ~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk 193 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHK 193 (423)
T ss_pred CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccc
Confidence 5678999999999999976 888877766544 33223333322 247788889988777665554321 112333
Q ss_pred ceeeeeeEeCCCCEEEEecCCCeEEEEECCC-----CeEEE------------------eeccCC--ccccCceeeccCC
Q 002615 630 EVKCQPVVDAPRQLIWCGSHDHNLYALDFRN-----YRCVY------------------KLPCGG--SIFGSPAIDEVHD 684 (900)
Q Consensus 630 ~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~-----g~~~w------------------~~~~~~--~~~~~~~~~~~~~ 684 (900)
..+.+..+..++..+..|++|..|-.|+..+ ++-.- ...+.| ...++....+ ..
T Consensus 194 ~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~ 272 (423)
T KOG0313|consen 194 RSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-AT 272 (423)
T ss_pred cceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CC
Confidence 3444444555677888899999999999221 00000 001111 2233333333 68
Q ss_pred EEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-C--CCCEE-eeecCCCceec
Q 002615 685 VLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-S--SGSII-WRCRTGGPIFA 760 (900)
Q Consensus 685 ~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~--~G~~~-w~~~~~~~~~~ 760 (900)
.+|.+++|..|..||+.+ |...-+...+... .+.........+.+|+.+..+.++| . +|..+ .++..... +.
T Consensus 273 v~yS~SwDHTIk~WDlet--g~~~~~~~~~ksl-~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n-wV 348 (423)
T KOG0313|consen 273 VIYSVSWDHTIKVWDLET--GGLKSTLTTNKSL-NCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN-WV 348 (423)
T ss_pred ceEeecccceEEEEEeec--ccceeeeecCcce-eEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchh-hh
Confidence 899999999999999998 7777666655544 4555555677899999999999999 4 44443 33322222 22
Q ss_pred cccc-cccCCCeEEEEeeCCeEEEEeCCCCc-eeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEE
Q 002615 761 GPCT-SFALPSQVLICSRNGSIYSFEQESGN-LLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILR 838 (900)
Q Consensus 761 ~~~~-~~~~~~~l~~g~~dg~l~~~d~~tG~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d 838 (900)
+.+. .......+..|++|+.+..||..+-+ .++.+..+..-....-..+ +..|+.|+.|.+|+++.
T Consensus 349 ssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~------------~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 349 SSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE------------GGLIVSGGADNKLRIFK 416 (423)
T ss_pred hheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC------------CceEEeccCcceEEEec
Confidence 2111 12234467788999999999998876 6666655544333332222 56888999999998885
Q ss_pred e
Q 002615 839 V 839 (900)
Q Consensus 839 ~ 839 (900)
.
T Consensus 417 ~ 417 (423)
T KOG0313|consen 417 G 417 (423)
T ss_pred c
Confidence 4
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.4e-08 Score=109.92 Aligned_cols=204 Identities=13% Similarity=0.031 Sum_probs=133.1
Q ss_pred eeceeEec-CCCEEEEEeeCCEEEEEECCCCc-------EEEEEecCCceeeeeeEeCC-CCEEEEecCCCeEEEEECCC
Q 002615 590 ECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGD-------IYWTFQTCGEVKCQPVVDAP-RQLIWCGSHDHNLYALDFRN 660 (900)
Q Consensus 590 ~~~~~~~~-~~~~i~vg~~dg~l~~~d~~tG~-------~~w~~~~~~~~~~~~~~~~~-~~~i~~gs~dg~l~~~d~~~ 660 (900)
.....+++ ++..+++|+.||.|..||..++. .+..+..+........+.+. .+.+++++.|+.|..||..+
T Consensus 78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t 157 (493)
T PTZ00421 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER 157 (493)
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC
Confidence 34566776 66789999999999999987653 23344444444444556654 36788999999999999999
Q ss_pred CeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcc-eeeeeeeeCCCEEEEEe----e
Q 002615 661 YRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPA-FASLCITSANRHVICCL----V 735 (900)
Q Consensus 661 g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~-~~s~~~~~~~~~i~~~~----~ 735 (900)
++.+..+..+.....+..+.+++..++.++.+|.+..||+++ ++.+.....+... .........++.++.++ .
T Consensus 158 g~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rs--g~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~ 235 (493)
T PTZ00421 158 GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRD--GTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQ 235 (493)
T ss_pred CeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCC--CcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCC
Confidence 988777765554455555666667888999999999999987 7777666544322 12233344455665543 3
Q ss_pred cCcEEEEC-CCCC-EEeeecCCC-ceeccccccccCCCeEEEEee-CCeEEEEeCCCCceeeEEe
Q 002615 736 DGHVVALD-SSGS-IIWRCRTGG-PIFAGPCTSFALPSQVLICSR-NGSIYSFEQESGNLLWEYS 796 (900)
Q Consensus 736 ~g~v~~~d-~~G~-~~w~~~~~~-~~~~~~~~~~~~~~~l~~g~~-dg~l~~~d~~tG~~~w~~~ 796 (900)
++.+..|| .+.. .+....... .....+. .....+.+++++. ||.|++||..++++.....
T Consensus 236 Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~-~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~ 299 (493)
T PTZ00421 236 QRQIMLWDTRKMASPYSTVDLDQSSALFIPF-FDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS 299 (493)
T ss_pred CCeEEEEeCCCCCCceeEeccCCCCceEEEE-EcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee
Confidence 67899999 5443 322222111 1111111 1122446777764 9999999999998765443
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.9e-09 Score=112.96 Aligned_cols=262 Identities=15% Similarity=0.184 Sum_probs=170.9
Q ss_pred cCCCEEEEEeeCCEEEEEECCCCcEEEE--EecCCce-eeeeeEe-CCCCEEEEecCCCeEEEEECCCCeEEEeeccCCc
Q 002615 597 ADFSQVVVGCYKGKIYFLDYLTGDIYWT--FQTCGEV-KCQPVVD-APRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS 672 (900)
Q Consensus 597 ~~~~~i~vg~~dg~l~~~d~~tG~~~w~--~~~~~~~-~~~~~~~-~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~ 672 (900)
.++..+..++.||++..|+...++-+-+ +..+... ..+.++. .+++.+++|+.|+.+..|...+..++..+..+..
T Consensus 23 ~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~s 102 (745)
T KOG0301|consen 23 TDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKS 102 (745)
T ss_pred cCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhcccc
Confidence 3445688888899999999655443321 2222222 2222332 3567799999999999999999888887776665
Q ss_pred cccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEECCCCCEEeee
Q 002615 673 IFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRC 752 (900)
Q Consensus 673 ~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d~~G~~~w~~ 752 (900)
...+..+.. .+.++.|++|.++..|-.. +.......+....-.....+ .+.++.|+.|..|..|.. |+.+-++
T Consensus 103 nVC~ls~~~-~~~~iSgSWD~TakvW~~~----~l~~~l~gH~asVWAv~~l~-e~~~vTgsaDKtIklWk~-~~~l~tf 175 (745)
T KOG0301|consen 103 NVCSLSIGE-DGTLISGSWDSTAKVWRIG----ELVYSLQGHTASVWAVASLP-ENTYVTGSADKTIKLWKG-GTLLKTF 175 (745)
T ss_pred ceeeeecCC-cCceEecccccceEEecch----hhhcccCCcchheeeeeecC-CCcEEeccCcceeeeccC-Cchhhhh
Confidence 555444333 4668999999998888643 22222222222222222233 347888888988888863 4444333
Q ss_pred cCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCC
Q 002615 753 RTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSG 832 (900)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G 832 (900)
+......-. +....+..+..++.||.|..|+. +|+.+.++.-+.....+.. ...+++.++.+++|+
T Consensus 176 ~gHtD~VRg--L~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis-----------~~~~~~~Ivs~gEDr 241 (745)
T KOG0301|consen 176 SGHTDCVRG--LAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSIS-----------MALSDGLIVSTGEDR 241 (745)
T ss_pred ccchhheee--eEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEE-----------ecCCCCeEEEecCCc
Confidence 321111111 12334557888999999999997 6777766654444322221 122388999999999
Q ss_pred cEEEEEeecCcccccccccccceeeeeeeccCC-ccccCceeeCCEEEEeeeCCeEEEEEccc
Q 002615 833 SIHILRVNLDVTGKENQSKDHMVQEFAKLELQG-DIFSSPVMIGGRVFVGCRDDYIYCIALET 894 (900)
Q Consensus 833 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ss~~~~~~~l~vg~~dg~l~~ld~~t 894 (900)
++++|+.. ...+...+|+ .+++.-+..++.|++||.||.+|+|....
T Consensus 242 tlriW~~~---------------e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 242 TLRIWKKD---------------ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred eEEEeecC---------------ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 99999875 4556678888 66776777799999999999999997653
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.4e-08 Score=111.61 Aligned_cols=225 Identities=9% Similarity=0.003 Sum_probs=143.2
Q ss_pred ecCCCeEEEEECCCCcEEEEEecCCceeeceeEecC-CCEEEEEeeCCEEEEEECCCCcE--------EEEEecCCceee
Q 002615 563 GSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLAD-FSQVVVGCYKGKIYFLDYLTGDI--------YWTFQTCGEVKC 633 (900)
Q Consensus 563 gs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~-~~~i~vg~~dg~l~~~d~~tG~~--------~w~~~~~~~~~~ 633 (900)
|+..+.+..|+..+...+..+..+........+.++ +..+++|+.||.|..||..++.. ...+..+.....
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 334566777777666666666666554456677775 57899999999999999876532 223333444444
Q ss_pred eeeEeCCCCEE-EEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEee
Q 002615 634 QPVVDAPRQLI-WCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHE 712 (900)
Q Consensus 634 ~~~~~~~~~~i-~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~ 712 (900)
...+.++...+ .+++.|+.|..||..+++.++.+.... ...+..+..++..+.+++.++.+..||+.+ ++.+..+.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~-~V~SlswspdG~lLat~s~D~~IrIwD~Rs--g~~i~tl~ 206 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPK-KLSSLKWNIKGNLLSGTCVGKHMHIIDPRK--QEIASSFH 206 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCC-cEEEEEECCCCCEEEEEecCCEEEEEECCC--CcEEEEEe
Confidence 55666655554 578899999999999998887765443 334455566566777777899999999998 77776665
Q ss_pred cCCcceeeee-----eeeCCCEEEEEeecC----cEEEEC-C-CCCEEeeecCCCceec-cccccccCCCe-EEEEeeCC
Q 002615 713 LEVPAFASLC-----ITSANRHVICCLVDG----HVVALD-S-SGSIIWRCRTGGPIFA-GPCTSFALPSQ-VLICSRNG 779 (900)
Q Consensus 713 ~~~~~~~s~~-----~~~~~~~i~~~~~~g----~v~~~d-~-~G~~~w~~~~~~~~~~-~~~~~~~~~~~-l~~g~~dg 779 (900)
.+.....+.. +..+++.+++++.++ .+..|| . .++.+-.......... .|.. ....+. +++|..|+
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~-D~~tg~l~lsGkGD~ 285 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHY-DESTGLIYLIGKGDG 285 (568)
T ss_pred cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEee-eCCCCCEEEEEECCC
Confidence 5433221211 124566777766654 689999 5 3555544332221111 1111 112344 45677899
Q ss_pred eEEEEeCCCCce
Q 002615 780 SIYSFEQESGNL 791 (900)
Q Consensus 780 ~l~~~d~~tG~~ 791 (900)
.+++|+..++.+
T Consensus 286 tIr~~e~~~~~~ 297 (568)
T PTZ00420 286 NCRYYQHSLGSI 297 (568)
T ss_pred eEEEEEccCCcE
Confidence 999999988764
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.9e-09 Score=109.53 Aligned_cols=272 Identities=12% Similarity=0.074 Sum_probs=169.8
Q ss_pred eceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccC
Q 002615 591 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG 670 (900)
Q Consensus 591 ~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~ 670 (900)
++.++++...+=++-+..-.+..|+..+-....++.-=....++..+-.++..+.+|...|.+..||.++...+..+..+
T Consensus 30 ssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah 109 (487)
T KOG0310|consen 30 SSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAH 109 (487)
T ss_pred eeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhc
Confidence 45566653332233333456788887776555433221233455556556677777888899999997765454444444
Q ss_pred CccccCceeeccCC-EEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCC-EEEEEeecCcEEEEC-C-CC
Q 002615 671 GSIFGSPAIDEVHD-VLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANR-HVICCLVDGHVVALD-S-SG 746 (900)
Q Consensus 671 ~~~~~~~~~~~~~~-~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~-~i~~~~~~g~v~~~d-~-~G 746 (900)
....-..-+.+.++ .+..|++++.+..||+++ +........+....-+..+.+.++ .++.|++||.|..|| . .+
T Consensus 110 ~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~--a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~ 187 (487)
T KOG0310|consen 110 QAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST--AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT 187 (487)
T ss_pred cCceeEEEecccCCeEEEecCCCceEEEEEcCC--cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC
Confidence 33222222222234 455566777777888887 544334444444444555555444 688899999999999 3 34
Q ss_pred CEEeeecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCc-eeeEEecCC-ceecccccccccccccccccCCCeE
Q 002615 747 SIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGN-LLWEYSVGD-PITASAYIDEHLQLKLESCLSIDRL 824 (900)
Q Consensus 747 ~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~-~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (900)
..+.+++.+.|+-+.. ...++.+++...+..+.+||..+|. ++-....+. .+++..+..+ +..
T Consensus 188 ~~v~elnhg~pVe~vl---~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~------------~~r 252 (487)
T KOG0310|consen 188 SRVVELNHGCPVESVL---ALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASD------------STR 252 (487)
T ss_pred ceeEEecCCCceeeEE---EcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecC------------Cce
Confidence 6677777777765443 3335567777777789999998664 443333233 3333332222 689
Q ss_pred EEEEcCCCcEEEEEeecCcccccccccccceeeeeeeccCCccccCcee-eCCEEEEeeeCCeEEEEEc
Q 002615 825 VCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM-IGGRVFVGCRDDYIYCIAL 892 (900)
Q Consensus 825 l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~-~~~~l~vg~~dg~l~~ld~ 892 (900)
++.++-||.+.+||..+- ++....+.++.+.+..+. .+..+++|-.||.+..-+.
T Consensus 253 LlS~sLD~~VKVfd~t~~-------------Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 253 LLSGSLDRHVKVFDTTNY-------------KVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred EeecccccceEEEEccce-------------EEEEeeecccceeeEEecCCCceEEEecccceeeeehh
Confidence 999999999999996543 677777888887775554 3578999999988776643
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.5e-09 Score=109.36 Aligned_cols=271 Identities=14% Similarity=0.111 Sum_probs=161.3
Q ss_pred CEEEEEECCCCcEEEEEecCCceee--eeeEeCCCCEEEEecCC-CeEEEEECCCCeEE-EeeccCCccccCceeeccCC
Q 002615 609 GKIYFLDYLTGDIYWTFQTCGEVKC--QPVVDAPRQLIWCGSHD-HNLYALDFRNYRCV-YKLPCGGSIFGSPAIDEVHD 684 (900)
Q Consensus 609 g~l~~~d~~tG~~~w~~~~~~~~~~--~~~~~~~~~~i~~gs~d-g~l~~~d~~~g~~~-w~~~~~~~~~~~~~~~~~~~ 684 (900)
..+.+||++||...|+|........ ..++. ..++..+... ..|..|........ .+.-++|.+.+- ...+.+.
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~--~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al-~s~n~G~ 94 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTALN--NEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHAL-ASSNLGY 94 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhhc--hhheeeecccCccccccccCchhhhhhhcccccceeee-ecCCCce
Confidence 4588999999999999986533221 12222 2445555433 23555544322211 233334444332 2333345
Q ss_pred EEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-C-------CC--CEEeeecC
Q 002615 685 VLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-S-------SG--SIIWRCRT 754 (900)
Q Consensus 685 ~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~-------~G--~~~w~~~~ 754 (900)
.|+.||..|.+|+|.+++ |..+-....+-.......+..++..++.|+.||.|.+|. . ++ +.+..+..
T Consensus 95 ~l~ag~i~g~lYlWelss--G~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~ 172 (476)
T KOG0646|consen 95 FLLAGTISGNLYLWELSS--GILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD 172 (476)
T ss_pred EEEeecccCcEEEEEecc--ccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeecc
Confidence 566666999999999998 887765555544445666777888999999999998875 2 11 11211111
Q ss_pred CC-ceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCc
Q 002615 755 GG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGS 833 (900)
Q Consensus 755 ~~-~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~ 833 (900)
.. ++...-+.....+..+|..+.|..+.+||...|.++-++..+..+.+...- +.+..+|+|+.+|.
T Consensus 173 HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lD------------pae~~~yiGt~~G~ 240 (476)
T KOG0646|consen 173 HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALD------------PAERVVYIGTEEGK 240 (476)
T ss_pred CcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEc------------ccccEEEecCCcce
Confidence 11 111111111223568999999999999999999999888777766544322 22899999999999
Q ss_pred EEEEEeecCcccccc----cccccceeeeeeeccCC--ccccCcee--eCCEEEEeeeCCeEEEEEcccccc
Q 002615 834 IHILRVNLDVTGKEN----QSKDHMVQEFAKLELQG--DIFSSPVM--IGGRVFVGCRDDYIYCIALETQHL 897 (900)
Q Consensus 834 v~~~d~~~~~~~~~~----~~~~~~~~~~~~~~l~~--~~~ss~~~--~~~~l~vg~~dg~l~~ld~~tg~~ 897 (900)
|++.+...-. ++.. .........+..+.-+. ..++...+ ++..|..|+.||.+-.||..+.+.
T Consensus 241 I~~~~~~~~~-~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 241 IFQNLLFKLS-GQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred EEeeehhcCC-cccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHH
Confidence 9998775321 1110 00000001111111111 23444444 567888899999999999876553
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5e-10 Score=112.19 Aligned_cols=275 Identities=11% Similarity=0.010 Sum_probs=183.8
Q ss_pred eEEeeCCceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCC
Q 002615 550 LVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG 629 (900)
Q Consensus 550 ~v~~~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~ 629 (900)
.|.-..++.+|.+||.+|.+..|+..+=.+.--...++....+..++.++.+++.|..+|.|..|++.-..++-....+.
T Consensus 101 ~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~ 180 (464)
T KOG0284|consen 101 VVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHA 180 (464)
T ss_pred eEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhh
Confidence 33344567899999999999999874322211123455566678889999999999999999999865433322222232
Q ss_pred ceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeee
Q 002615 630 EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLW 709 (900)
Q Consensus 630 ~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w 709 (900)
+......+.+.+..+..+|.||.|..||-.-.+.-.....+|.-.-+..-.+..+.|+.++.+..+..||+++ |+.+-
T Consensus 181 eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS--g~cl~ 258 (464)
T KOG0284|consen 181 EAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS--GSCLA 258 (464)
T ss_pred hhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC--cchhh
Confidence 3333445666677788899999999999877666555555555555555555568899999999999999998 98887
Q ss_pred EeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCCc-eeccccccccCCCeEEEEeeCCeEEEEeCC
Q 002615 710 LHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP-IFAGPCTSFALPSQVLICSRNGSIYSFEQE 787 (900)
Q Consensus 710 ~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~-~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~ 787 (900)
+...++.......+...++.+..++.|..+.+|| .+-+.+..+..... +.+.. ......+.+..|+.||.|+.|...
T Consensus 259 tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~-WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 259 TLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLT-WHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred hhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeec-cccccccceeeccCCCceEEEecc
Confidence 7777776666667777788899999999999999 65555555542221 11111 112234567778889999888765
Q ss_pred CCceeeEEecC--CceecccccccccccccccccCCCeEEEEEcCCCcEEEEEe
Q 002615 788 SGNLLWEYSVG--DPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 839 (900)
Q Consensus 788 tG~~~w~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~ 839 (900)
.-+.+-..... ..+.+.. ..+.+..++.|+.|..+..|..
T Consensus 338 ~~~p~~~i~~AHd~~iwsl~------------~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 338 LEEPLGEIPPAHDGEIWSLA------------YHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred ccccccCCCcccccceeeee------------ccccceeEeecCCCcceeeecc
Confidence 32322221111 1122211 2334889999999999988854
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.4e-08 Score=108.09 Aligned_cols=311 Identities=14% Similarity=0.147 Sum_probs=185.8
Q ss_pred cccccceEEeeCCceEEEEecCCCeEEEEECCCCcEEEEEecC-CceeeceeEecCCCE-EEEEeeCCEEEEEECCCCcE
Q 002615 544 CVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLE-GRIECSAAVLADFSQ-VVVGCYKGKIYFLDYLTGDI 621 (900)
Q Consensus 544 ~v~~sp~v~~~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~-i~vg~~dg~l~~~d~~tG~~ 621 (900)
++..+|++ +.|.+|..+|.|..+|.+.++.+-+++.. +++ ++..+..||.. +.+|+..|.+..||++..+.
T Consensus 207 ~ieqsPaL------DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~V-tslSFrtDG~p~las~~~~G~m~~wDLe~kkl 279 (910)
T KOG1539|consen 207 AIEQSPAL------DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRV-TSLSFRTDGNPLLASGRSNGDMAFWDLEKKKL 279 (910)
T ss_pred EeccCCcc------eEEEEeccCceEEEEEcccCcEEEEEEccccce-eEEEeccCCCeeEEeccCCceEEEEEcCCCee
Confidence 44556765 67999999999999999999999999886 555 46667666654 56677779999999998888
Q ss_pred EEEEe-cCCceeeeeeEeCCCCEEEEecCCCeE--EEEECCCC-------------------------eE----------
Q 002615 622 YWTFQ-TCGEVKCQPVVDAPRQLIWCGSHDHNL--YALDFRNY-------------------------RC---------- 663 (900)
Q Consensus 622 ~w~~~-~~~~~~~~~~~~~~~~~i~~gs~dg~l--~~~d~~~g-------------------------~~---------- 663 (900)
.|... .+........+-+....++..+.|+.+ +.+|..+| ..
T Consensus 280 ~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~ 359 (910)
T KOG1539|consen 280 INVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTL 359 (910)
T ss_pred eeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcch
Confidence 88654 221111111111111122222222111 11120000 00
Q ss_pred ------------------------------------------------------------------EEeeccC--C----
Q 002615 664 ------------------------------------------------------------------VYKLPCG--G---- 671 (900)
Q Consensus 664 ------------------------------------------------------------------~w~~~~~--~---- 671 (900)
.|.+... |
T Consensus 360 r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L 439 (910)
T KOG1539|consen 360 RSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVL 439 (910)
T ss_pred hhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEe
Confidence 0111100 0
Q ss_pred ---------ccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEee---cCCcceeeeeeeeCCCEEEEEeecCcE
Q 002615 672 ---------SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHE---LEVPAFASLCITSANRHVICCLVDGHV 739 (900)
Q Consensus 672 ---------~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~---~~~~~~~s~~~~~~~~~i~~~~~~g~v 739 (900)
....+.+++.=++..++|+..|.|-.||.++ |-..-++. .+.......++..-+..++.++.+|-+
T Consensus 440 ~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS--Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gil 517 (910)
T KOG1539|consen 440 DPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS--GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGIL 517 (910)
T ss_pred cCccccccCcceEEEEEeccCceEEEeccCCeEEEEEccc--CeeecccccCccccCceeEEEecCCCceEEEccCcceE
Confidence 0011222333356688899999999999997 76655552 233333444554456678888899999
Q ss_pred EEEC-CCCCEEeeecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEEecCC-ceeccccccccccccccc
Q 002615 740 VALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGD-PITASAYIDEHLQLKLES 817 (900)
Q Consensus 740 ~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~~~~~~~~~ 817 (900)
..|| .++.++-+...+..+... +..-..+.+.++..|=.|..+|..|-++..++..++ .+....+..+
T Consensus 518 kfw~f~~k~l~~~l~l~~~~~~i--v~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~D-------- 587 (910)
T KOG1539|consen 518 KFWDFKKKVLKKSLRLGSSITGI--VYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPD-------- 587 (910)
T ss_pred EEEecCCcceeeeeccCCCccee--eeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCC--------
Confidence 9999 666655555444332111 111123456666777789999999888877766443 4443333333
Q ss_pred ccCCCeEEEEEcCCCcEEEEEeecCcccccccccccceeeeeeeccCCccc---cCceeeCCEEEEeeeC-CeEEEEEc
Q 002615 818 CLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIF---SSPVMIGGRVFVGCRD-DYIYCIAL 892 (900)
Q Consensus 818 ~~~~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---ss~~~~~~~l~vg~~d-g~l~~ld~ 892 (900)
++++++++.|+.|++||.-++ .++..+.+..... .+| .++.|.....| ++||.|..
T Consensus 588 ----grWlisasmD~tIr~wDlpt~-------------~lID~~~vd~~~~sls~SP--ngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 588 ----GRWLISASMDSTIRTWDLPTG-------------TLIDGLLVDSPCTSLSFSP--NGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred ----CcEEEEeecCCcEEEEeccCc-------------ceeeeEecCCcceeeEECC--CCCEEEEEEecCceEEEEEc
Confidence 899999999999999999877 4444443333221 123 45666666666 67888854
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-09 Score=110.85 Aligned_cols=267 Identities=10% Similarity=0.139 Sum_probs=184.6
Q ss_pred eeCCceEEEEecCCCeEEEEECCCC---cEEEEEec--CCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEec
Q 002615 553 LKDSDIYLFVGSHSHKFICADAKRS---SVLWEIKL--EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT 627 (900)
Q Consensus 553 ~~~~~~~v~igs~~g~l~~~d~~tG---~~~w~~~~--~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~ 627 (900)
++.....||.|...+ |..||..-- ...-.... .+....++-+.+|+..+++|.+-.+|-.||+..-...-+.++
T Consensus 427 IS~~trhVyTgGkgc-VKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikael 505 (705)
T KOG0639|consen 427 ISNPTRHVYTGGKGC-VKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAEL 505 (705)
T ss_pred ecCCcceeEecCCCe-EEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhc
Confidence 345677899988655 999997521 11111111 233445677888999999999988999999877655433333
Q ss_pred CC--ceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCc
Q 002615 628 CG--EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPF 705 (900)
Q Consensus 628 ~~--~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g 705 (900)
.. ..-....+.++.++.|.+..||+|.+||+.+...+..++.+..-.++..+..++-.||.|..|..+.+||+.. |
T Consensus 506 tssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlre--g 583 (705)
T KOG0639|consen 506 TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLRE--G 583 (705)
T ss_pred CCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhh--h
Confidence 22 2222334556778888899999999999999999988887666667777777778999999999999999998 9
Q ss_pred eeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEECCCCCEEeeecCCCc-eeccccccccCCCeEEEE-eeCCeEEE
Q 002615 706 HTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGP-IFAGPCTSFALPSQVLIC-SRNGSIYS 783 (900)
Q Consensus 706 ~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d~~G~~~w~~~~~~~-~~~~~~~~~~~~~~l~~g-~~dg~l~~ 783 (900)
..+.++++...+| +...++.++.+.+|-.++.+.++..+|...+++..... +++.. +..-|.-|+. ..|+-|.+
T Consensus 584 rqlqqhdF~SQIf-SLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlK---Fa~cGkwfvStGkDnlLna 659 (705)
T KOG0639|consen 584 RQLQQHDFSSQIF-SLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLK---FAYCGKWFVSTGKDNLLNA 659 (705)
T ss_pred hhhhhhhhhhhhe-ecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEE---ecccCceeeecCchhhhhh
Confidence 9888888887775 55566788899999999999999866766666554332 33332 2223344443 45677778
Q ss_pred EeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEE
Q 002615 784 FEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILR 838 (900)
Q Consensus 784 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d 838 (900)
|..--|.-+++.+-.+.+.+.-+..+ +.+|+.|+-+.+--+|.
T Consensus 660 wrtPyGasiFqskE~SsVlsCDIS~d------------dkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 660 WRTPYGASIFQSKESSSVLSCDISFD------------DKYIVTGSGDKKATVYE 702 (705)
T ss_pred ccCccccceeeccccCcceeeeeccC------------ceEEEecCCCcceEEEE
Confidence 87766777666555555544333222 77888887776555553
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.8e-09 Score=107.02 Aligned_cols=231 Identities=11% Similarity=0.080 Sum_probs=157.2
Q ss_pred eCCceEEEEecCCCeEEEEECCCCcEE---EEEe---------------cCCceeeceeEecCCCEEEEEeeCCEEEEEE
Q 002615 554 KDSDIYLFVGSHSHKFICADAKRSSVL---WEIK---------------LEGRIECSAAVLADFSQVVVGCYKGKIYFLD 615 (900)
Q Consensus 554 ~~~~~~v~igs~~g~l~~~d~~tG~~~---w~~~---------------~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d 615 (900)
.+.+.++|.++.++.|..|+..+|+.. |... .+.....+.++++|+.++..|..|..+..|+
T Consensus 151 s~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~ 230 (479)
T KOG0299|consen 151 SPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWD 230 (479)
T ss_pred eccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEec
Confidence 345789999999999999999999843 4331 1112234678899999999999999999999
Q ss_pred CCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccC-CccccCceeeccCCEEEEEeCCCc
Q 002615 616 YLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG-GSIFGSPAIDEVHDVLYVASTSGR 694 (900)
Q Consensus 616 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~-~~~~~~~~~~~~~~~l~v~t~~g~ 694 (900)
..|++.+..+..+-..+...++-.....+|+++.|..+..|+.+....+-.+..+ ..+.+.-++.. +..+-+|..|..
T Consensus 231 ~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~r-eR~vtVGgrDrT 309 (479)
T KOG0299|consen 231 CDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSR-ERCVTVGGRDRT 309 (479)
T ss_pred CcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcc-cceEEeccccce
Confidence 9999988877766666666677766778999999999999998764433222222 23333333433 455677778999
Q ss_pred EEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCCceeccc----------c
Q 002615 695 LTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGP----------C 763 (900)
Q Consensus 695 l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~~~~~~----------~ 763 (900)
+..|.+.. .-+.+ +..+...+...++ .++..+++|+.+|.|+.|+ ..-++++......++...+ .
T Consensus 310 ~rlwKi~e-esqli--frg~~~sidcv~~-In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Wits 385 (479)
T KOG0299|consen 310 VRLWKIPE-ESQLI--FRGGEGSIDCVAF-INDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITS 385 (479)
T ss_pred eEEEeccc-cceee--eeCCCCCeeeEEE-ecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceee
Confidence 99998754 11222 2222222233333 4567889999999999999 7778887766544332221 0
Q ss_pred cc-ccCCCeEEEEeeCCeEEEEeCCCC
Q 002615 764 TS-FALPSQVLICSRNGSIYSFEQESG 789 (900)
Q Consensus 764 ~~-~~~~~~l~~g~~dg~l~~~d~~tG 789 (900)
+. ....+.+..|+.+|.|..|-..+|
T Consensus 386 la~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 386 LAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eEecccCceEEecCCCCceEEEEecCC
Confidence 11 123456667788999999888877
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.7e-08 Score=93.63 Aligned_cols=266 Identities=14% Similarity=0.098 Sum_probs=182.2
Q ss_pred CCceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeee
Q 002615 555 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 634 (900)
Q Consensus 555 ~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 634 (900)
.+++.||..+.|.....|-..+|+.+-.+..+.....++-+..+...++.|+.|..+..||.++|+++.+.+++..++..
T Consensus 20 ~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~ 99 (327)
T KOG0643|consen 20 REGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRV 99 (327)
T ss_pred CCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEE
Confidence 45678888888888888888889999998888776666777777778999999999999999999999888888777765
Q ss_pred eeEeCCCCEEEEecC-----CCeEEEEECC-------CCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCC
Q 002615 635 PVVDAPRQLIWCGSH-----DHNLYALDFR-------NYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKA 702 (900)
Q Consensus 635 ~~~~~~~~~i~~gs~-----dg~l~~~d~~-------~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~ 702 (900)
- ++.+++++.+.+. .+.|..+|.. ..++..++.+...-..+....+.+..|+.|..+|.|..||+.+
T Consensus 100 ~-F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~ 178 (327)
T KOG0643|consen 100 D-FSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDART 178 (327)
T ss_pred e-eccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEccc
Confidence 3 4444455554432 3567788776 3456677766655455555566678899999999999999998
Q ss_pred CCceeeeEe-ecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCCceeccccccccCCCeEEEEeeCCe
Q 002615 703 LPFHTLWLH-ELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGS 780 (900)
Q Consensus 703 ~~g~~~w~~-~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~ 780 (900)
|..+-.. ..+...+....+..+.-+++.++.|..-.++| .+-+.+-++.+..|+-+.. +... .+.+++|. +
T Consensus 179 --g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aa-isP~-~d~VilgG---G 251 (327)
T KOG0643|consen 179 --GKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAA-ISPL-LDHVILGG---G 251 (327)
T ss_pred --CceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccccccee-cccc-cceEEecC---C
Confidence 7655433 34444456667777777888899999999999 7777777777777654443 2222 23455442 2
Q ss_pred EEEEeCC-----CCceeeE------------EecC-CceecccccccccccccccccCCCeEEEEEcCCCcEEEEEee
Q 002615 781 IYSFEQE-----SGNLLWE------------YSVG-DPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 840 (900)
Q Consensus 781 l~~~d~~-----tG~~~w~------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~ 840 (900)
.-+.|.. .|++.-. ++-+ +++.+.++ .+++.....|..||.|++....
T Consensus 252 qeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAf------------hPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 252 QEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAF------------HPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEE------------CCCCcccccCCCCceEEEEEec
Confidence 3344432 3443211 1111 12222222 2347788889999999887655
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.2e-08 Score=97.37 Aligned_cols=261 Identities=12% Similarity=0.147 Sum_probs=158.7
Q ss_pred EEEEEeeCCEEEEEECCC------CcE------EEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeec
Q 002615 601 QVVVGCYKGKIYFLDYLT------GDI------YWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLP 668 (900)
Q Consensus 601 ~i~vg~~dg~l~~~d~~t------G~~------~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~ 668 (900)
.|++|||...|++|++.- -.. +|.++.+.....+.+++ +..+..|+.|.+|..||..+.+.+-..-
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee
Confidence 488999999999987432 112 45555555444444443 4778889999999999998755443322
Q ss_pred cCCccccCceeeccC--CEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CC
Q 002615 669 CGGSIFGSPAIDEVH--DVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SS 745 (900)
Q Consensus 669 ~~~~~~~~~~~~~~~--~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~ 745 (900)
.+........+.... ..|+.|+.||.+.+|+... -..+-.++.+..-.....+.+++...+..+.|+.+..|| -+
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~--W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS--WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR 158 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCC--eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhc
Confidence 222222222222211 3789999999999999776 555555555554455666777888888778899999999 77
Q ss_pred CCEEeeecCCCceecccccccc-CCCeEEEEeeCCeEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCeE
Q 002615 746 GSIIWRCRTGGPIFAGPCTSFA-LPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRL 824 (900)
Q Consensus 746 G~~~w~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (900)
|+.-+..+....... +... .++..+++..++ |-+|..++-++.-+...+..+...++. +++.
T Consensus 159 Gr~a~v~~L~~~at~---v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~~~~r~l~~~~l-------------~~~~ 221 (362)
T KOG0294|consen 159 GRVAFVLNLKNKATL---VSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIENPKRILCATFL-------------DGSE 221 (362)
T ss_pred CccceeeccCCccee---eEEcCCCCEEEEEeccE-EEEEecccHhHhhhhhccccceeeeec-------------CCce
Confidence 876554443322111 1122 233455555444 777766665554444333333333322 2789
Q ss_pred EEEEcCCCcEEEEEeecCcccccccccccceeeeeeeccCCccccCceee----CCEEEEeeeCCeEEEEEcccc
Q 002615 825 VCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMI----GGRVFVGCRDDYIYCIALETQ 895 (900)
Q Consensus 825 l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~~----~~~l~vg~~dg~l~~ld~~tg 895 (900)
+.+|.+++.+.++|.+++... ..+.-+..-+-..+.. ..+|...+.||.|..||....
T Consensus 222 L~vG~d~~~i~~~D~ds~~~~-------------~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 222 LLVGGDNEWISLKDTDSDTPL-------------TEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEEecCCceEEEeccCCCccc-------------eeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 999999999999998864211 1111111111222222 236777889999999998765
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.9e-09 Score=107.91 Aligned_cols=262 Identities=14% Similarity=0.072 Sum_probs=159.0
Q ss_pred CeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCC-EEEEEECCCCcEEE-EEecCCceeeeeeEeCCCCEE
Q 002615 567 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKG-KIYFLDYLTGDIYW-TFQTCGEVKCQPVVDAPRQLI 644 (900)
Q Consensus 567 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg-~l~~~d~~tG~~~w-~~~~~~~~~~~~~~~~~~~~i 644 (900)
+.+.+||+.||...|+++.........+-.-...++.++.... .|..|........- .+-.++.+.+. ..++.+..+
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al-~s~n~G~~l 96 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHAL-ASSNLGYFL 96 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccceeee-ecCCCceEE
Confidence 4688999999999999987632211111111223555554322 35555543322222 22234444433 334445556
Q ss_pred EEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCC-------CceeeeEeecCCcc
Q 002615 645 WCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKAL-------PFHTLWLHELEVPA 717 (900)
Q Consensus 645 ~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~-------~g~~~w~~~~~~~~ 717 (900)
+.|+-.|.||+|...+|+.+..+..+-...+...+.+++..++.|+.||.+..|.+-+. +-+++..+..+.-.
T Consensus 97 ~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htls 176 (476)
T KOG0646|consen 97 LAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLS 176 (476)
T ss_pred EeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcce
Confidence 66668999999999999988777666555666777777888999999999999874320 11222222222222
Q ss_pred eeeeeeee--CCCEEEEEeecCcEEEEC-CCCCEEeeecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCc--ee
Q 002615 718 FASLCITS--ANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGN--LL 792 (900)
Q Consensus 718 ~~s~~~~~--~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~--~~ 792 (900)
.....+.. .+.++|.++.|..+.+|| ..|.++-++..+..+.+.. ..-.+..+|+|+.+|.++..+..+-. -.
T Consensus 177 ITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~--lDpae~~~yiGt~~G~I~~~~~~~~~~~~~ 254 (476)
T KOG0646|consen 177 ITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVA--LDPAERVVYIGTEEGKIFQNLLFKLSGQSA 254 (476)
T ss_pred eEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEE--EcccccEEEecCCcceEEeeehhcCCcccc
Confidence 22222211 246899999999999999 8898887776655443322 12235689999999999988754322 10
Q ss_pred ----eEE----------ecCC---ceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecCc
Q 002615 793 ----WEY----------SVGD---PITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDV 843 (900)
Q Consensus 793 ----w~~----------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~ 843 (900)
-.+ .-+. .+....+ ..++..+..|+.||+|.+||..+.+
T Consensus 255 ~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLai------------s~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 255 GVNQKGRHEENTQINVLVGHENESAITCLAI------------STDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred cccccccccccceeeeeccccCCcceeEEEE------------ecCccEEEeeCCCCCEEEEecchHH
Confidence 000 0000 1111111 2248899999999999999998764
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.9e-09 Score=111.09 Aligned_cols=258 Identities=14% Similarity=0.184 Sum_probs=172.8
Q ss_pred CceEEEEecCCCeEEEEECCCCcEEEEEec--C-CceeeceeEe-cCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCce
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWEIKL--E-GRIECSAAVL-ADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV 631 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~~~w~~~~--~-~~~~~~~~~~-~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~ 631 (900)
.+..+..+|.+|.+..|+...++-+-.... + +-+.++.++. .+++.+++|..|+.+..|...++.+...+..+...
T Consensus 24 ~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~sn 103 (745)
T KOG0301|consen 24 DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSN 103 (745)
T ss_pred CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccc
Confidence 345678888999999999875553322222 2 2233335554 45567999999999999999888888887777776
Q ss_pred eeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCC-ccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeE
Q 002615 632 KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG-SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWL 710 (900)
Q Consensus 632 ~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~-~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~ 710 (900)
+|+.... ..+.++.||+|.++..|-. |++......+. .+++...+.. +.++.|+.|..|+.|.- |+.+-.
T Consensus 104 VC~ls~~-~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e--~~~vTgsaDKtIklWk~----~~~l~t 174 (745)
T KOG0301|consen 104 VCSLSIG-EDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPE--NTYVTGSADKTIKLWKG----GTLLKT 174 (745)
T ss_pred eeeeecC-CcCceEecccccceEEecc--hhhhcccCCcchheeeeeecCC--CcEEeccCcceeeeccC----Cchhhh
Confidence 6665444 3466899999999999964 34444443333 3444444443 68888999999999973 455555
Q ss_pred eecCCcceeeeeeeeCCCEEEEEeecCcEEEECCCCCEEeeecCCC-ceeccccccccCCCeEEEEeeCCeEEEEeCCCC
Q 002615 711 HELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESG 789 (900)
Q Consensus 711 ~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d~~G~~~w~~~~~~-~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG 789 (900)
+..+.......+.. ++..+..++.||.|..++.+|+.+-++.... -+++.. ....++.|+.++.|+++..|+..
T Consensus 175 f~gHtD~VRgL~vl-~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis--~~~~~~~Ivs~gEDrtlriW~~~-- 249 (745)
T KOG0301|consen 175 FSGHTDCVRGLAVL-DDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSIS--MALSDGLIVSTGEDRTLRIWKKD-- 249 (745)
T ss_pred hccchhheeeeEEe-cCCCeEeecCCceEEEEeccCceeeeeeccceEEEEEE--ecCCCCeEEEecCCceEEEeecC--
Confidence 55555544444444 4456788889999999997788776554222 233322 23346678888899999999864
Q ss_pred ceeeEEecCC-ceecccccccccccccccccCCCeEEEEEcCCCcEEEEEee
Q 002615 790 NLLWEYSVGD-PITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 840 (900)
Q Consensus 790 ~~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~ 840 (900)
+..-.+.++. .+.+.-+.. ++-|++|+.||.|++|-..
T Consensus 250 e~~q~I~lPttsiWsa~~L~-------------NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 250 ECVQVITLPTTSIWSAKVLL-------------NGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred ceEEEEecCccceEEEEEee-------------CCCEEEeccCceEEEEEec
Confidence 5555555554 233222221 6778999999999999765
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.9e-09 Score=109.13 Aligned_cols=315 Identities=14% Similarity=0.143 Sum_probs=164.1
Q ss_pred cccceEEeeCCceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEE
Q 002615 546 DASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTF 625 (900)
Q Consensus 546 ~~sp~v~~~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~ 625 (900)
++.-..+..|..+.+|+|+.+| ++.||..+|+..-.-...........+.+-.+.+|||+++| +|..+.+. |.+
T Consensus 164 d~~V~aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGTdqG-v~~~e~~G----~~~ 237 (671)
T COG3292 164 DTPVVALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGTDQG-VYLQEAEG----WRA 237 (671)
T ss_pred CccceeeeeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEeccc-eEEEchhh----ccc
Confidence 3333334567889999999999 88899999998754333321112333444456899999887 88877554 443
Q ss_pred ec-----CCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEee-cc--CCccccCceeeccCCEEEEEeCCCcEEE
Q 002615 626 QT-----CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKL-PC--GGSIFGSPAIDEVHDVLYVASTSGRLTA 697 (900)
Q Consensus 626 ~~-----~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~-~~--~~~~~~~~~~~~~~~~l~v~t~~g~l~~ 697 (900)
.. +..... ....+..+.+|+|+.+| +..+....+.+.... +. +-+-..+... +..+.+|+++.+| +..
T Consensus 238 sn~~~~lp~~~I~-ll~qD~qG~lWiGTenG-l~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~-D~dGsLWv~t~~g-iv~ 313 (671)
T COG3292 238 SNWGPMLPSGNIL-LLVQDAQGELWIGTENG-LWRTRLPRQGLQIPLSKMHLGVSTVNSLWL-DTDGSLWVGTYGG-IVR 313 (671)
T ss_pred cccCCCCcchhee-eeecccCCCEEEeeccc-ceeEecCCCCccccccccCCccccccceee-ccCCCEeeeccCc-eEE
Confidence 32 222222 33445678899999776 555554444332221 11 1111222333 3468899999877 445
Q ss_pred EEcCCCCceeeeEeecCCcc---eeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeee-cCCCceeccccccccCCCeE
Q 002615 698 ISVKALPFHTLWLHELEVPA---FASLCITSANRHVICCLVDGHVVALD-SSGSIIWRC-RTGGPIFAGPCTSFALPSQV 772 (900)
Q Consensus 698 ~~~~~~~g~~~w~~~~~~~~---~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~-~~~~~~~~~~~~~~~~~~~l 772 (900)
|.... -...-........ +....+......+...+..|.+.+.+ .+|..+... ..-+...+.. ..+.++.+
T Consensus 314 ~~~a~--w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~--~~d~~g~l 389 (671)
T COG3292 314 YLTAD--WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTT--LEDSRGRL 389 (671)
T ss_pred Eecch--hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchh--hhccCCcE
Confidence 54332 1211111111111 01111222244555555556677777 788765332 1111222222 24458899
Q ss_pred EEEeeCCeEEEEeCCC-CceeeEEe-cCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecCcccccccc
Q 002615 773 LICSRNGSIYSFEQES-GNLLWEYS-VGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQS 850 (900)
Q Consensus 773 ~~g~~dg~l~~~d~~t-G~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~ 850 (900)
|+|+.+.++..|+.++ +..+-... ...........+ -++.+|+|+.+| |...+++.+. ....
T Consensus 390 Wlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived------------~dnsLWIGTs~G-lvk~~pe~~~---v~n~ 453 (671)
T COG3292 390 WLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVED------------PDNSLWIGTSGG-LVKRDPESGR---VLNL 453 (671)
T ss_pred EEEecccchhhhccCCcccccccccCCcccceeeeeec------------CCCCEEEeccCC-eEecCccccc---hhcc
Confidence 9999997799998776 32221111 011111111111 155699999887 4444544321 0000
Q ss_pred cccceeeeeeeccCCccccCcee-eCCEEEEeeeCCeEEEEEccccc
Q 002615 851 KDHMVQEFAKLELQGDIFSSPVM-IGGRVFVGCRDDYIYCIALETQH 896 (900)
Q Consensus 851 ~~~~~~~~~~~~l~~~~~ss~~~-~~~~l~vg~~dg~l~~ld~~tg~ 896 (900)
-.+....++++.+...-+ .+++||++..+| ++.|+....-
T Consensus 454 -----ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g~g-va~~~sq~~~ 494 (671)
T COG3292 454 -----LNPGSHGLDGSRVEQLGLGPDGRLWLAAGSG-VAAWESQRRM 494 (671)
T ss_pred -----cccccCcCCcchhhhhccCCCCceEEEecce-eeeeccccce
Confidence 001111223333222222 468999998765 6888765443
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.1e-07 Score=94.61 Aligned_cols=267 Identities=12% Similarity=0.082 Sum_probs=168.0
Q ss_pred ceEEEEecCC-----CeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEee----------CCEEEEEECCCCcE
Q 002615 557 DIYLFVGSHS-----HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY----------KGKIYFLDYLTGDI 621 (900)
Q Consensus 557 ~~~v~igs~~-----g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~----------dg~l~~~d~~tG~~ 621 (900)
..++|+-... +.++.+|..+++++-.+..+.+.. ..++++++.+|+.+. +..|-.||.+|++.
T Consensus 12 ~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~--~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~ 89 (352)
T TIGR02658 12 ARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN--PVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP 89 (352)
T ss_pred CCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc--eeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE
Confidence 4456665543 789999999999998888876653 358999999999876 57899999999999
Q ss_pred EEEEecCCc-------eeeeeeEeCCCCEEEEec-C-CCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCC
Q 002615 622 YWTFQTCGE-------VKCQPVVDAPRQLIWCGS-H-DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS 692 (900)
Q Consensus 622 ~w~~~~~~~-------~~~~~~~~~~~~~i~~gs-~-dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~ 692 (900)
......+.. ......+++++..+|+.. . +..+..+|..+++.+-.+..++....-+.. +...++-..|
T Consensus 90 ~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~---e~~~~~~~~D 166 (352)
T TIGR02658 90 IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTA---NDTFFMHCRD 166 (352)
T ss_pred EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEec---CCccEEEeec
Confidence 988876543 122345667778899865 3 678999999999999888775532222211 1222233345
Q ss_pred CcEEEEEcCCCCceeeeE-eec----CCcceeeeeeee-CCCEEEEEeecCcEEEEC-CCCC----EEeeecCCC-----
Q 002615 693 GRLTAISVKALPFHTLWL-HEL----EVPAFASLCITS-ANRHVICCLVDGHVVALD-SSGS----IIWRCRTGG----- 756 (900)
Q Consensus 693 g~l~~~~~~~~~g~~~w~-~~~----~~~~~~s~~~~~-~~~~i~~~~~~g~v~~~d-~~G~----~~w~~~~~~----- 756 (900)
|.+..+...+ +|+..-. ... ..+.+..+.+.. ++..+|+... |.|+.+| .... ..|..-..+
T Consensus 167 g~~~~v~~d~-~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~ 244 (352)
T TIGR02658 167 GSLAKVGYGT-KGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADG 244 (352)
T ss_pred CceEEEEecC-CCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccc
Confidence 5555444332 2442211 111 122333343344 4556666654 9999999 3322 234432111
Q ss_pred --ceeccccccccCCCeEEEEee----------CCeEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCe-
Q 002615 757 --PIFAGPCTSFALPSQVLICSR----------NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDR- 823 (900)
Q Consensus 757 --~~~~~~~~~~~~~~~l~~g~~----------dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 823 (900)
+.-..+......++.+|+..+ .+.|..+|.++++.+-++.++.......+..+ +.
T Consensus 245 wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~D------------gkp 312 (352)
T TIGR02658 245 WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQD------------AKP 312 (352)
T ss_pred cCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCC------------CCe
Confidence 000011111224578888542 24799999999999988888776554443332 66
Q ss_pred EEEEEc-CCCcEEEEEeecC
Q 002615 824 LVCICT-SSGSIHILRVNLD 842 (900)
Q Consensus 824 ~l~~g~-~~G~v~~~d~~~~ 842 (900)
++|+.. .++.|.++|..++
T Consensus 313 ~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 313 LLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred EEEEeCCCCCcEEEEECcCC
Confidence 778776 5778999999876
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2e-09 Score=108.17 Aligned_cols=265 Identities=11% Similarity=0.030 Sum_probs=178.0
Q ss_pred CceEEEEecCCCeEEEEECCCCcE--EEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceee
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSV--LWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 633 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~~--~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 633 (900)
..+++..|..|..|..|+...++. .-..........+.-+..++..+++.++|+.+..||..+++..-++..+..-.+
T Consensus 186 ~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt 265 (459)
T KOG0288|consen 186 NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVT 265 (459)
T ss_pred CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhccccccee
Confidence 447788888888899998776552 111111112234566777888899999999999999999988887776655554
Q ss_pred eeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeec
Q 002615 634 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 713 (900)
Q Consensus 634 ~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 713 (900)
..-+......++.|++|.++..||+..+.|....-...... ..++. ...++.|-.++.|..||..+ +........
T Consensus 266 ~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cn-DI~~~--~~~~~SgH~DkkvRfwD~Rs--~~~~~sv~~ 340 (459)
T KOG0288|consen 266 AAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCN-DIVCS--ISDVISGHFDKKVRFWDIRS--ADKTRSVPL 340 (459)
T ss_pred eehhhccccceeeccccchhhhhhhhhhheecccccccccc-ceEec--ceeeeecccccceEEEeccC--CceeeEeec
Confidence 44444334448899999999999999877765443322222 12222 24456677899999999887 777777777
Q ss_pred CCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCCceeccc---cccccCCCeEEEEeeCCeEEEEeCCCC
Q 002615 714 EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGP---CTSFALPSQVLICSRNGSIYSFEQESG 789 (900)
Q Consensus 714 ~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~~~~~~---~~~~~~~~~l~~g~~dg~l~~~d~~tG 789 (900)
++. ..+..+..++..+.+++.|..+-++| .+-++...++..+...++. ++....+..+..|+.||.||.|+..+|
T Consensus 341 gg~-vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 341 GGR-VTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred Ccc-eeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc
Confidence 663 46677777788888889999999999 7666766665443322221 122224567888999999999999999
Q ss_pred ceeeEEecCCce--ecccccccccccccccccCCCeEEEEEcCCCcEEEE
Q 002615 790 NLLWEYSVGDPI--TASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHIL 837 (900)
Q Consensus 790 ~~~w~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~ 837 (900)
++.......... ..+... .+++..+..++.++.+.+|
T Consensus 420 KlE~~l~~s~s~~aI~s~~W-----------~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 420 KLEKVLSLSTSNAAITSLSW-----------NPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred eEEEEeccCCCCcceEEEEE-----------cCCCchhhcccCCcceEec
Confidence 998766544322 111111 1226666666666666555
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-07 Score=105.89 Aligned_cols=223 Identities=9% Similarity=0.028 Sum_probs=138.4
Q ss_pred eCCEEEEEECCCCcEEEEEecCCceeeeeeEeCC-CCEEEEecCCCeEEEEECCCCeE--------EEeeccCCccccCc
Q 002615 607 YKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAP-RQLIWCGSHDHNLYALDFRNYRC--------VYKLPCGGSIFGSP 677 (900)
Q Consensus 607 ~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~-~~~i~~gs~dg~l~~~d~~~g~~--------~w~~~~~~~~~~~~ 677 (900)
..|.+..|+......+..+..+........+.+. +..|++|+.|+.+..||..++.. +..+..+.....+.
T Consensus 52 ~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sV 131 (568)
T PTZ00420 52 LIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISII 131 (568)
T ss_pred ceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEE
Confidence 4556777776665566666655544455566654 57889999999999999876421 22222233333444
Q ss_pred eeeccCCEE-EEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCC
Q 002615 678 AIDEVHDVL-YVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG 755 (900)
Q Consensus 678 ~~~~~~~~l-~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~ 755 (900)
...+.+..+ ..++.++.+..||+.+ ++........ ....+..+..++..+.+++.++.+.+|| .+|+.+.++...
T Consensus 132 af~P~g~~iLaSgS~DgtIrIWDl~t--g~~~~~i~~~-~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 132 DWNPMNYYIMCSSGFDSFVNIWDIEN--EKRAFQINMP-KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EECCCCCeEEEEEeCCCeEEEEECCC--CcEEEEEecC-CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 455544444 5678899999999987 7766666533 3345666667777787788899999999 888887655432
Q ss_pred Cceeccccccc----cCCCeEEEEeeCC----eEEEEeCCC-CceeeEEecCCceec-ccccccccccccccccCCCeEE
Q 002615 756 GPIFAGPCTSF----ALPSQVLICSRNG----SIYSFEQES-GNLLWEYSVGDPITA-SAYIDEHLQLKLESCLSIDRLV 825 (900)
Q Consensus 756 ~~~~~~~~~~~----~~~~~l~~g~~dg----~l~~~d~~t-G~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l 825 (900)
.......++.. ..++.|+.++.++ .|..||..+ ++.+-....+..... .++.+. ..+.++
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~----------~tg~l~ 278 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDE----------STGLIY 278 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeC----------CCCCEE
Confidence 21111111111 2334566666553 799999885 555544443332211 233322 125667
Q ss_pred EEEcCCCcEEEEEeecC
Q 002615 826 CICTSSGSIHILRVNLD 842 (900)
Q Consensus 826 ~~g~~~G~v~~~d~~~~ 842 (900)
.+|..|+.|++|+...+
T Consensus 279 lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEECCCeEEEEEccCC
Confidence 78889999999998755
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.3e-08 Score=107.83 Aligned_cols=195 Identities=9% Similarity=0.036 Sum_probs=131.8
Q ss_pred CceEEEEecCCCeEEEEECCCCc-------EEEEEecCCceeeceeEecCC-CEEEEEeeCCEEEEEECCCCcEEEEEec
Q 002615 556 SDIYLFVGSHSHKFICADAKRSS-------VLWEIKLEGRIECSAAVLADF-SQVVVGCYKGKIYFLDYLTGDIYWTFQT 627 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~-------~~w~~~~~~~~~~~~~~~~~~-~~i~vg~~dg~l~~~d~~tG~~~w~~~~ 627 (900)
++..++.|+.|+.|..||..++. .+..+..+........+.+++ +.+++|+.|+.|..||..+++..-.+..
T Consensus 87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~ 166 (493)
T PTZ00421 87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC 166 (493)
T ss_pred CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC
Confidence 45688999999999999987653 233344444334456677654 5788899999999999999988777665
Q ss_pred CCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCc-cccCceeeccCCEEEEEe----CCCcEEEEEcCC
Q 002615 628 CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS-IFGSPAIDEVHDVLYVAS----TSGRLTAISVKA 702 (900)
Q Consensus 628 ~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~-~~~~~~~~~~~~~l~v~t----~~g~l~~~~~~~ 702 (900)
+........+.+++..+++++.|+.|..||+.+++.+.....+.. ...........+.++.+. .++.+..||+.+
T Consensus 167 h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 167 HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence 555455556777778899999999999999999998877655432 222233333345555432 368899999875
Q ss_pred CCceeeeEeecCC-cceeeeeeeeCCCEEEEEee-cCcEEEEC-CCCCEEee
Q 002615 703 LPFHTLWLHELEV-PAFASLCITSANRHVICCLV-DGHVVALD-SSGSIIWR 751 (900)
Q Consensus 703 ~~g~~~w~~~~~~-~~~~s~~~~~~~~~i~~~~~-~g~v~~~d-~~G~~~w~ 751 (900)
. .+.+....... .....+.+..+++.+++++. |+.|.+|| .+++++..
T Consensus 247 ~-~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 247 M-ASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred C-CCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence 1 12332222221 12223334556778888874 89999999 88877644
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.3e-08 Score=95.79 Aligned_cols=268 Identities=15% Similarity=0.081 Sum_probs=161.5
Q ss_pred CCEEEEEeeCCEEEEEECCCCcEEEEEecCCc-eeeeeeEe--CCCCEEEEecCCCeEEEEECCCCeEEEee----ccCC
Q 002615 599 FSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE-VKCQPVVD--APRQLIWCGSHDHNLYALDFRNYRCVYKL----PCGG 671 (900)
Q Consensus 599 ~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~--~~~~~i~~gs~dg~l~~~d~~~g~~~w~~----~~~~ 671 (900)
.+.|+.|||||.+..|| ..|+...++..+.. ++...-+. +....+++++.|.++..|-.+.++..-+. ..+.
T Consensus 115 ~~~IltgsYDg~~riWd-~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk 193 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWD-LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHK 193 (423)
T ss_pred CceEEEeecCCeeEEEe-cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccc
Confidence 56899999999999999 67888877766543 33222222 22346888999998877765555432211 1122
Q ss_pred ccccCceeeccCCEEEEEeCCCcEEEEEcCCCC---ce--------------------eeeEeecCCcceeeeeeeeCCC
Q 002615 672 SIFGSPAIDEVHDVLYVASTSGRLTAISVKALP---FH--------------------TLWLHELEVPAFASLCITSANR 728 (900)
Q Consensus 672 ~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~---g~--------------------~~w~~~~~~~~~~s~~~~~~~~ 728 (900)
...-+.....++.++..|+.|..|-.|+..+.. ++ ++-....+....++. ...+.+
T Consensus 194 ~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V-~w~d~~ 272 (423)
T KOG0313|consen 194 RSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSV-VWSDAT 272 (423)
T ss_pred cceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeE-EEcCCC
Confidence 333344445556788889999999999822110 10 111111112222333 334578
Q ss_pred EEEEEeecCcEEEEC-CCCCEEeeecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCc--ee-eEEecCCceecc
Q 002615 729 HVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGN--LL-WEYSVGDPITAS 804 (900)
Q Consensus 729 ~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~--~~-w~~~~~~~~~~~ 804 (900)
.+|.++.|-+|..+| .+|..+-+...+..+.+..... ....|..|+.|..+..||+.+|. .. .++.-+.+.+++
T Consensus 273 v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~--~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVss 350 (423)
T KOG0313|consen 273 VIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSP--LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSS 350 (423)
T ss_pred ceEeecccceEEEEEeecccceeeeecCcceeEeeccc--ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhh
Confidence 899999999999999 8888877766665554433211 34578888999999999998864 22 233333332222
Q ss_pred cccccccccccccccCCCeEEEEEcCCCcEEEEEeecCcccccccccccceeeeeeeccCCccccCceeeC-CEEEEeee
Q 002615 805 AYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIG-GRVFVGCR 883 (900)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~~~-~~l~vg~~ 883 (900)
.-. ...+...++.++.||.+.+||.++-... +....-+++-+-+.-..+ ..|..|+.
T Consensus 351 vkw----------sp~~~~~~~S~S~D~t~klWDvRS~k~p------------lydI~~h~DKvl~vdW~~~~~IvSGGa 408 (423)
T KOG0313|consen 351 VKW----------SPTNEFQLVSGSYDNTVKLWDVRSTKAP------------LYDIAGHNDKVLSVDWNEGGLIVSGGA 408 (423)
T ss_pred eec----------CCCCceEEEEEecCCeEEEEEeccCCCc------------ceeeccCCceEEEEeccCCceEEeccC
Confidence 111 1223677889999999999999854210 111111122222222223 47777888
Q ss_pred CCeEEEEEc
Q 002615 884 DDYIYCIAL 892 (900)
Q Consensus 884 dg~l~~ld~ 892 (900)
|+.|+++.-
T Consensus 409 D~~l~i~~~ 417 (423)
T KOG0313|consen 409 DNKLRIFKG 417 (423)
T ss_pred cceEEEecc
Confidence 999988753
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.5e-08 Score=94.78 Aligned_cols=237 Identities=9% Similarity=0.077 Sum_probs=150.5
Q ss_pred eceeEec-CCCEEEEEeeCCEEEEEECCC-CcEEEE--EecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEe
Q 002615 591 CSAAVLA-DFSQVVVGCYKGKIYFLDYLT-GDIYWT--FQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYK 666 (900)
Q Consensus 591 ~~~~~~~-~~~~i~vg~~dg~l~~~d~~t-G~~~w~--~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~ 666 (900)
+...+++ ....+.+|++||+|.+|+.++ |...-+ ....+.+.+ ..+.+++..+++|+-|+.+..||+.+++....
T Consensus 31 S~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~-v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v 109 (347)
T KOG0647|consen 31 SALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLD-VCWSDDGSKVFSGGCDKQAKLWDLASGQVSQV 109 (347)
T ss_pred heeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEE-EEEccCCceEEeeccCCceEEEEccCCCeeee
Confidence 3445666 445666999999999999876 554322 223344443 45677788999999999999999999977655
Q ss_pred eccCCccccCceeecc-CCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-C
Q 002615 667 LPCGGSIFGSPAIDEV-HDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-S 744 (900)
Q Consensus 667 ~~~~~~~~~~~~~~~~-~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~ 744 (900)
-...+++...-.+..- -..|..|++|..|.-||.+. -.++-+..++...+.. ......+++++.+..|.+|+ .
T Consensus 110 ~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~--~~pv~t~~LPeRvYa~---Dv~~pm~vVata~r~i~vynL~ 184 (347)
T KOG0647|consen 110 AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS--SNPVATLQLPERVYAA---DVLYPMAVVATAERHIAVYNLE 184 (347)
T ss_pred eecccceeEEEEecCCCcceeEecccccceeecccCC--CCeeeeeeccceeeeh---hccCceeEEEecCCcEEEEEcC
Confidence 5445555444444331 13578899999999999886 6777777777655432 23356788899999999999 6
Q ss_pred CCCEEeeecCCCceeccccccc-cCCCeEEEEeeCCeEEEEeCCCC--ceeeEEecCCc-------eecccccccccccc
Q 002615 745 SGSIIWRCRTGGPIFAGPCTSF-ALPSQVLICSRNGSIYSFEQESG--NLLWEYSVGDP-------ITASAYIDEHLQLK 814 (900)
Q Consensus 745 ~G~~~w~~~~~~~~~~~~~~~~-~~~~~l~~g~~dg~l~~~d~~tG--~~~w~~~~~~~-------~~~~~~~~~~~~~~ 814 (900)
++....+.....--+..-|+.. ...+...+|+..|.+.....+.+ +....++.+-. +|+.- +
T Consensus 185 n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVN----s---- 256 (347)
T KOG0647|consen 185 NPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVN----S---- 256 (347)
T ss_pred CCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEec----c----
Confidence 6654332211111111222221 12233478889998888777766 33344443321 22211 1
Q ss_pred cccccCCCeEEEEEcCCCcEEEEEeecC
Q 002615 815 LESCLSIDRLVCICTSSGSIHILRVNLD 842 (900)
Q Consensus 815 ~~~~~~~~~~l~~g~~~G~v~~~d~~~~ 842 (900)
....+.-+.+..++.||.+..||.+..
T Consensus 257 -i~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 257 -IAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred -eEeecccceEEEecCCceEEEecchhh
Confidence 111223567788888999999998755
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.7e-09 Score=109.10 Aligned_cols=267 Identities=13% Similarity=0.158 Sum_probs=166.5
Q ss_pred ceEEEEecCCCeEEEEECCCCcEE------EEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEE---Eec
Q 002615 557 DIYLFVGSHSHKFICADAKRSSVL------WEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWT---FQT 627 (900)
Q Consensus 557 ~~~v~igs~~g~l~~~d~~tG~~~------w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~---~~~ 627 (900)
+.++|.|+.||.|..|+.....-. -++..+.....-.+...++..++..+.|-+|..|+...+- .|- +..
T Consensus 37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-~~c~stir~ 115 (735)
T KOG0308|consen 37 GRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-TFCMSTIRT 115 (735)
T ss_pred CceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-chhHhhhhc
Confidence 457999999999999985432211 1111222222233444556678888889999999987764 332 223
Q ss_pred C-CceeeeeeEeCCCCEEEEecCCCeEEEEECCCCe--EEEeecc------C-Ccccc--CceeeccCCEEEEEeCCCcE
Q 002615 628 C-GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR--CVYKLPC------G-GSIFG--SPAIDEVHDVLYVASTSGRL 695 (900)
Q Consensus 628 ~-~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~--~~w~~~~------~-~~~~~--~~~~~~~~~~l~v~t~~g~l 695 (900)
+ +.+++......+...+..|+-|+.|+.||..+|. .+-.++. + |+..+ +.+..+.+-.+..|+.++.|
T Consensus 116 H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~l 195 (735)
T KOG0308|consen 116 HKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDL 195 (735)
T ss_pred ccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccce
Confidence 3 3444444436666778889999999999999883 3322221 1 22111 12222222245567778999
Q ss_pred EEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCCc-eeccccccccCCCeEE
Q 002615 696 TAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP-IFAGPCTSFALPSQVL 773 (900)
Q Consensus 696 ~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~-~~~~~~~~~~~~~~l~ 773 (900)
..||+.+ ++.+-+...+....-...+..++.+++.++.||.|..|| ...+.+.++..... +.+..+- ..-..+|
T Consensus 196 r~wDprt--~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~--~sf~~vY 271 (735)
T KOG0308|consen 196 RLWDPRT--CKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSS--PSFTHVY 271 (735)
T ss_pred EEecccc--ccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeC--CCcceEE
Confidence 9999998 887777777666666666777788999999999999999 55555555443322 3322211 1224799
Q ss_pred EEeeCCeEEEEeCCCC-ceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEee
Q 002615 774 ICSRNGSIYSFEQESG-NLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 840 (900)
Q Consensus 774 ~g~~dg~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~ 840 (900)
.|+.||.|++=|..+- +..-..+-..++...... ..++-+|+++.++.|..|...
T Consensus 272 sG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~------------~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 272 SGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLH------------EHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred ecCCCCcEEecccCCchhheEeecCCCchhhhhhc------------cccCCceeeeccccceecCCc
Confidence 9999999999988763 222222222232211111 114566999999999998554
|
|
| >COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.1e-08 Score=102.57 Aligned_cols=95 Identities=18% Similarity=0.249 Sum_probs=67.1
Q ss_pred CCCcEEEEEecCCc----------eeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCcee------eeeeE-
Q 002615 575 KRSSVLWEIKLEGR----------IECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK------CQPVV- 637 (900)
Q Consensus 575 ~tG~~~w~~~~~~~----------~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~------~~~~~- 637 (900)
.+-++.|++..++- .+.++.... +.+|+.+..+.++++|+.||+.+|+++...... ++-.+
T Consensus 182 ~nL~~AWty~TGD~k~~~d~~e~t~e~tPLkvg--dtlYvcTphn~v~ALDa~TGkekWkydp~~~~nv~~~~~tCrgVs 259 (773)
T COG4993 182 GNLQVAWTYRTGDVKQPEDPGETTNEVTPLKVG--DTLYVCTPHNRVFALDAATGKEKWKYDPNLKSNVDPQHQTCRGVS 259 (773)
T ss_pred hccceeEEEecCcccCCCCcccccccccceEEC--CEEEEecCcceeEEeeccCCceeeecCCCCCCCccccccccccee
Confidence 34566777765531 233555544 489999999999999999999999987532110 01011
Q ss_pred ---------eCCCCEEEEecCCCeEEEEECCCCeEEEeeccCC
Q 002615 638 ---------DAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG 671 (900)
Q Consensus 638 ---------~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~ 671 (900)
.+....||..+.|..|.++|.++|++.|.+..++
T Consensus 260 y~~a~a~~k~pc~~rIflpt~DarlIALdA~tGkvc~~Fa~~G 302 (773)
T COG4993 260 YGAAKADAKSPCPRRIFLPTADARLIALDADTGKVCWSFANKG 302 (773)
T ss_pred cccccccccCCCceeEEeecCCceEEEEeCCCCcEeheeccCc
Confidence 1123569999999999999999999999987654
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.6e-07 Score=98.24 Aligned_cols=144 Identities=13% Similarity=0.087 Sum_probs=109.3
Q ss_pred CCceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeee
Q 002615 555 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 634 (900)
Q Consensus 555 ~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 634 (900)
++.-.+.+|-.||.|..||..++...-.+..+.+..+..-++..|..+..|+.|+.|..||.-.-.-+.++..+......
T Consensus 75 ~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~ 154 (888)
T KOG0306|consen 75 DDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQ 154 (888)
T ss_pred CCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhH
Confidence 34456789999999999999998888788778776666678888899999999999999998665566666665555555
Q ss_pred eeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEc
Q 002615 635 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISV 700 (900)
Q Consensus 635 ~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~ 700 (900)
..+..++..++..+.|+.+..||+++..|....-.+..-....++.+ ..++.++.++.+..|++
T Consensus 155 ~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L 218 (888)
T KOG0306|consen 155 ALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWEL 218 (888)
T ss_pred HhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEe
Confidence 55555567788889999999999999988766544444444445554 66777777777777776
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.7e-08 Score=102.05 Aligned_cols=279 Identities=16% Similarity=0.171 Sum_probs=171.7
Q ss_pred ceEEEEecCCCeEEEEECCCCcEEEE---EecCCceeeceeE-ecCCCEEEEEeeCCEEEEEECCCCc--EEEEEec---
Q 002615 557 DIYLFVGSHSHKFICADAKRSSVLWE---IKLEGRIECSAAV-LADFSQVVVGCYKGKIYFLDYLTGD--IYWTFQT--- 627 (900)
Q Consensus 557 ~~~v~igs~~g~l~~~d~~tG~~~w~---~~~~~~~~~~~~~-~~~~~~i~vg~~dg~l~~~d~~tG~--~~w~~~~--- 627 (900)
+..++..|+|-+|..|++..+. .|. +..+.....+..+ ..+...+..|+.|+.|+.||..+|. ..-++..
T Consensus 85 ~~tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 85 GKTLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred CCceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 4477888999999999988775 343 2233332223333 5666678889999999999999883 3333221
Q ss_pred ---C-C--ceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcC
Q 002615 628 ---C-G--EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVK 701 (900)
Q Consensus 628 ---~-~--~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~ 701 (900)
. + ..+.+.+..+.+-.|+.|+.++-|..||+++++.+-+...+....-...+.+++.+++.++.||.|..||+.
T Consensus 164 ~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg 243 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG 243 (735)
T ss_pred ccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecc
Confidence 1 1 111222223333356667888999999999998887777655555566677778899999999999999987
Q ss_pred CCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCC-CEEeeecCCCceeccccccccCCCeEEEEeeCC
Q 002615 702 ALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSG-SIIWRCRTGGPIFAGPCTSFALPSQVLICSRNG 779 (900)
Q Consensus 702 ~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G-~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg 779 (900)
. -..+.++..+....-+....++-..+|.|+.+|.|++-| .+- +..--++...|+.... ....++.+|+++.|+
T Consensus 244 q--QrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~--~~~~~~~~WvtTtds 319 (735)
T KOG0308|consen 244 Q--QRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLH--LHEHDNSVWVTTTDS 319 (735)
T ss_pred c--cceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhh--hccccCCceeeeccc
Confidence 6 556666666655443444445567899999999999988 542 2222233344433221 122346679999999
Q ss_pred eEEEEeCCC-------CceeeEEecC--Cceec---cccc--ccccccccccccCCCeEEEEEcCCCcEEEEEeec
Q 002615 780 SIYSFEQES-------GNLLWEYSVG--DPITA---SAYI--DEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 841 (900)
Q Consensus 780 ~l~~~d~~t-------G~~~w~~~~~--~~~~~---~~~~--~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~ 841 (900)
.|.+|-..- |.. |..... .+... +|.. .....+.-.+...+.+.+..-...|.+..||.-.
T Consensus 320 ~I~rW~~~~~~~l~~s~~~-~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~ 394 (735)
T KOG0308|consen 320 SIKRWKLEPDIALSVSGDL-DFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILA 394 (735)
T ss_pred cceecCCccccccccCCCC-CcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeee
Confidence 999886421 111 111111 11111 1110 1111111112234467888888899999999854
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.4e-07 Score=96.51 Aligned_cols=184 Identities=15% Similarity=0.100 Sum_probs=129.3
Q ss_pred ceEEEEecCCCe--EEEEECCCCcEEEEEecCCceeeceeEecCCC-EEEEEeeCCEEEEEECCCCcEEEEEecCC---c
Q 002615 557 DIYLFVGSHSHK--FICADAKRSSVLWEIKLEGRIECSAAVLADFS-QVVVGCYKGKIYFLDYLTGDIYWTFQTCG---E 630 (900)
Q Consensus 557 ~~~v~igs~~g~--l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~-~i~vg~~dg~l~~~d~~tG~~~w~~~~~~---~ 630 (900)
...+.++..++. ||.+|.++...+-...+......++++.++|. .|++++....+|.||+.++++.......+ .
T Consensus 225 ~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~ 304 (514)
T KOG2055|consen 225 APLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEK 304 (514)
T ss_pred CceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccc
Confidence 344567777774 56667666666666666665556788888887 78888888899999999988754322211 1
Q ss_pred eeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeE
Q 002615 631 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWL 710 (900)
Q Consensus 631 ~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~ 710 (900)
..-.--++.++..|.+.+..|+|+.+..+|++.+-.++..|.+.... +..++..||+.+.+|.++.||++. -+.+.+
T Consensus 305 ~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~-fsSdsk~l~~~~~~GeV~v~nl~~--~~~~~r 381 (514)
T KOG2055|consen 305 SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFT-FSSDSKELLASGGTGEVYVWNLRQ--NSCLHR 381 (514)
T ss_pred hhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEE-EecCCcEEEEEcCCceEEEEecCC--cceEEE
Confidence 11111234456788888899999999999999988888877654443 334467889888899999999998 344444
Q ss_pred eecCCcce-eeeeeeeCCCEEEEEeecCcEEEEC
Q 002615 711 HELEVPAF-ASLCITSANRHVICCLVDGHVVALD 743 (900)
Q Consensus 711 ~~~~~~~~-~s~~~~~~~~~i~~~~~~g~v~~~d 743 (900)
....+.+. .+.+++..+.++.+|+..|-|.+||
T Consensus 382 f~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 382 FVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYD 415 (514)
T ss_pred EeecCccceeeeeecCCCceEEeccCcceEEEec
Confidence 43333322 4555666777888899899999998
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.9e-08 Score=104.58 Aligned_cols=267 Identities=13% Similarity=0.146 Sum_probs=149.1
Q ss_pred eeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCc
Q 002615 593 AAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS 672 (900)
Q Consensus 593 ~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~ 672 (900)
+.+.+-.+.+|+|+.+| |+.||..+|+.+-.-...-....-..+.+-.+.+|+|+++| ++..+.+. |.+..-+.
T Consensus 169 aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGTdqG-v~~~e~~G----~~~sn~~~ 242 (671)
T COG3292 169 ALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGTDQG-VYLQEAEG----WRASNWGP 242 (671)
T ss_pred eeeeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEeccc-eEEEchhh----ccccccCC
Confidence 44445556899999888 99999999988754332221112222333467899999776 88877665 55544332
Q ss_pred c-----ccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceee-ee-eeeCCCEEEEEeecCcEEEECCC
Q 002615 673 I-----FGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFAS-LC-ITSANRHVICCLVDGHVVALDSS 745 (900)
Q Consensus 673 ~-----~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s-~~-~~~~~~~i~~~~~~g~v~~~d~~ 745 (900)
. .... ..+..+.+|+||.+| +.++.... .+-..-..+.+.+ ++. .. ....++.+|+++.+|.+...+..
T Consensus 243 ~lp~~~I~ll-~qD~qG~lWiGTenG-l~r~~l~r-q~Lq~~~~~~~l~-~S~vnsL~~D~dGsLWv~t~~giv~~~~a~ 318 (671)
T COG3292 243 MLPSGNILLL-VQDAQGELWIGTENG-LWRTRLPR-QGLQIPLSKMHLG-VSTVNSLWLDTDGSLWVGTYGGIVRYLTAD 318 (671)
T ss_pred CCcchheeee-ecccCCCEEEeeccc-ceeEecCC-CCccccccccCCc-cccccceeeccCCCEeeeccCceEEEecch
Confidence 2 2222 233468899999988 44444433 0211111222222 222 12 23457889999876654443333
Q ss_pred CCEEeeecCC-Cce-eccccccccCCCeEEEEeeCCeEEEEeCCCCceeeE-EecCCceecccccccccccccccccCCC
Q 002615 746 GSIIWRCRTG-GPI-FAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWE-YSVGDPITASAYIDEHLQLKLESCLSID 822 (900)
Q Consensus 746 G~~~w~~~~~-~~~-~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (900)
-...-.+... +.+ -.........+..++..+..|.+.+.+..+|..+-. +.......++...++ +
T Consensus 319 w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~------------~ 386 (671)
T COG3292 319 WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDS------------R 386 (671)
T ss_pred hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhcc------------C
Confidence 2221112211 111 111111123356678887788889999999987543 333333333333333 8
Q ss_pred eEEEEEcCCCcEEEEEeecCcccccccccccceeeeeeeccCCccccCcee-----eCCEEEEeeeCCeEEEEEcccccc
Q 002615 823 RLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM-----IGGRVFVGCRDDYIYCIALETQHL 897 (900)
Q Consensus 823 ~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~-----~~~~l~vg~~dg~l~~ld~~tg~~ 897 (900)
+.+|+|+...++-.|+.++ .+..+.......++++. -++.+|+|+.+| +...+++.++.
T Consensus 387 g~lWlgs~q~GLsrl~n~n---------------~~avlde~agl~ss~V~aived~dnsLWIGTs~G-lvk~~pe~~~v 450 (671)
T COG3292 387 GRLWLGSMQNGLSRLDNKN---------------EWAVLDEDAGLPSSEVSAIVEDPDNSLWIGTSGG-LVKRDPESGRV 450 (671)
T ss_pred CcEEEEecccchhhhccCC---------------cccccccccCCcccceeeeeecCCCCEEEeccCC-eEecCccccch
Confidence 8999999987787776653 23333333334444432 246799999876 66666666554
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-07 Score=100.72 Aligned_cols=267 Identities=12% Similarity=-0.000 Sum_probs=169.3
Q ss_pred ceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEec-CCceeeee
Q 002615 557 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT-CGEVKCQP 635 (900)
Q Consensus 557 ~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~-~~~~~~~~ 635 (900)
.+.|.+|... .||+|+..+|++.-....+....++...+.+|..|.+|+.+|.++.||.++.+..-.+.. +..-..+.
T Consensus 188 ~n~laValg~-~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~l 266 (484)
T KOG0305|consen 188 ANVLAVALGQ-SVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSL 266 (484)
T ss_pred CCeEEEEecc-eEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEE
Confidence 4566776644 599999999998776666544556888899999999999999999999887766655555 33333333
Q ss_pred eEeCCCCEEEEecCCCeEEEEECCCCeEEEe-eccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecC
Q 002615 636 VVDAPRQLIWCGSHDHNLYALDFRNYRCVYK-LPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE 714 (900)
Q Consensus 636 ~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~-~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~ 714 (900)
.. ....+-+|+.++.+..+|....+..-. ...+..-........++..+..|..|+.+..||... -.++.++..+
T Consensus 267 aW--~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~--~~p~~~~~~H 342 (484)
T KOG0305|consen 267 AW--NSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS--PEPKFTFTEH 342 (484)
T ss_pred ec--cCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCC--ccccEEEecc
Confidence 33 346788899999999999876554333 222222233333444456777788899999999743 3444455444
Q ss_pred CcceeeeeeeeC-CCEEEEE--eecCcEEEEC-CCCCEEeeecCCCceeccccccccCCCeEEEE--eeCCeEEEEeCCC
Q 002615 715 VPAFASLCITSA-NRHVICC--LVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLIC--SRNGSIYSFEQES 788 (900)
Q Consensus 715 ~~~~~s~~~~~~-~~~i~~~--~~~g~v~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g--~~dg~l~~~d~~t 788 (900)
....-....++- .+.+.+| +.|+.|..+| .+|+.+-...++..+-+..... ..+.+..+ ..++.|..|+..+
T Consensus 343 ~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk--~~kEi~sthG~s~n~i~lw~~ps 420 (484)
T KOG0305|consen 343 TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSK--KYKELLSTHGYSENQITLWKYPS 420 (484)
T ss_pred ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcC--CCCEEEEecCCCCCcEEEEeccc
Confidence 444444444443 3455554 4588899999 8888877777666654432111 12234433 3345566666555
Q ss_pred CceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeec
Q 002615 789 GNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 841 (900)
Q Consensus 789 G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~ 841 (900)
-+.+-.+..+...+.... ..+++..|++|+.|.++.+|+.-+
T Consensus 421 ~~~~~~l~gH~~RVl~la-----------~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 421 MKLVAELLGHTSRVLYLA-----------LSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred cceeeeecCCcceeEEEE-----------ECCCCCEEEEecccCcEEeccccC
Confidence 444333333322222111 223488999999999999997753
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.7e-07 Score=89.82 Aligned_cols=194 Identities=11% Similarity=0.059 Sum_probs=128.8
Q ss_pred eceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccC
Q 002615 591 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG 670 (900)
Q Consensus 591 ~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~ 670 (900)
.+..++..|.++.+||.||.+..||..|-.+-..+..+-...++..++.++..++++|.|..+..||...|.++.++...
T Consensus 27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~ 106 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD 106 (405)
T ss_pred ceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEcc
Confidence 36678899999999999999999999887765555556566778888888999999999999999999999999999888
Q ss_pred CccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeee---eeeeCCCEEEEEeecCcEEEEC-CCC
Q 002615 671 GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASL---CITSANRHVICCLVDGHVVALD-SSG 746 (900)
Q Consensus 671 ~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~---~~~~~~~~i~~~~~~g~v~~~d-~~G 746 (900)
.+++.......+.+..++.-.+..-+.++..+..-+.+-. +.....-.+. .....++++++|+..|.+.+++ .+-
T Consensus 107 spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~-d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~ 185 (405)
T KOG1273|consen 107 SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPK-DDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL 185 (405)
T ss_pred CccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccC-CCccccccccccccccCCCCEEEEecCcceEEEEecchh
Confidence 8877766555533443333333333444433311111111 1111111111 2455688999999999999999 776
Q ss_pred CEEeeecCCC--ceeccccccccCCCeEEEEeeCCeEEEEeCC
Q 002615 747 SIIWRCRTGG--PIFAGPCTSFALPSQVLICSRNGSIYSFEQE 787 (900)
Q Consensus 747 ~~~w~~~~~~--~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~ 787 (900)
+.+..++... .+-.. .....+..+.+-+.|..+..|+.+
T Consensus 186 e~vas~rits~~~IK~I--~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 186 ECVASFRITSVQAIKQI--IVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred eeeeeeeechheeeeEE--EEeccCcEEEEecCCceEEEEehh
Confidence 7664443221 11111 112235567788888888888764
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=5e-07 Score=88.05 Aligned_cols=238 Identities=14% Similarity=0.127 Sum_probs=148.4
Q ss_pred CCceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeee
Q 002615 555 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 634 (900)
Q Consensus 555 ~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 634 (900)
.-+..+.+|..+|.|..||..|-.+-..+..+-+..++.+.+.+|..++..+.|..+..||...|.++.++....++...
T Consensus 33 ~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~ 112 (405)
T KOG1273|consen 33 RWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGA 112 (405)
T ss_pred cCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCcccee
Confidence 35778999999999999999987766566667777789999999999999999999999999999999988888777655
Q ss_pred eeEeCCCCEEEEecCCCeEEEEECCCC--eEEEeeccCCccccCc---eeeccCCEEEEEeCCCcEEEEEcCCCCceeee
Q 002615 635 PVVDAPRQLIWCGSHDHNLYALDFRNY--RCVYKLPCGGSIFGSP---AIDEVHDVLYVASTSGRLTAISVKALPFHTLW 709 (900)
Q Consensus 635 ~~~~~~~~~i~~gs~dg~l~~~d~~~g--~~~w~~~~~~~~~~~~---~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w 709 (900)
.....+.+..++.-.+..-+.++..++ .++- .+..+....++ .++..+..||+||..|.+..|+..+ -+.+-
T Consensus 113 q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp-~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t--~e~va 189 (405)
T KOG1273|consen 113 QWHPRKRNKCVATIMEESPVVIDFSDPKHSVLP-KDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET--LECVA 189 (405)
T ss_pred eeccccCCeEEEEEecCCcEEEEecCCceeecc-CCCccccccccccccccCCCCEEEEecCcceEEEEecch--heeee
Confidence 433333344444333333333333322 1211 11223222222 3666778999999999999999887 56554
Q ss_pred EeecCC-cceeeeeeeeCCCEEEEEeecCcEEEEC-C-------CCCEE--eeecC--CCceeccccccccCCCeEEEEe
Q 002615 710 LHELEV-PAFASLCITSANRHVICCLVDGHVVALD-S-------SGSII--WRCRT--GGPIFAGPCTSFALPSQVLICS 776 (900)
Q Consensus 710 ~~~~~~-~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~-------~G~~~--w~~~~--~~~~~~~~~~~~~~~~~l~~g~ 776 (900)
.+.... ...-...+...+..+.+-+.|..|..|+ + .|++- .++.. +.......|. ...+..++.++
T Consensus 190 s~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccf-s~dgeYv~a~s 268 (405)
T KOG1273|consen 190 SFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCF-SGDGEYVCAGS 268 (405)
T ss_pred eeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheee-cCCccEEEecc
Confidence 443332 2223334444566677777777777765 2 11111 11110 0001111121 22334455554
Q ss_pred e-CCeEEEEeCCCCceeeEEe
Q 002615 777 R-NGSIYSFEQESGNLLWEYS 796 (900)
Q Consensus 777 ~-dg~l~~~d~~tG~~~w~~~ 796 (900)
. -..+|.|....|.++-.+.
T Consensus 269 ~~aHaLYIWE~~~GsLVKILh 289 (405)
T KOG1273|consen 269 ARAHALYIWEKSIGSLVKILH 289 (405)
T ss_pred ccceeEEEEecCCcceeeeec
Confidence 3 4579999999998876543
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-07 Score=103.56 Aligned_cols=237 Identities=11% Similarity=0.117 Sum_probs=164.7
Q ss_pred ceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCC
Q 002615 592 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG 671 (900)
Q Consensus 592 ~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~ 671 (900)
+..+.+....|.++-.+|.|..||-+-|.++-+|.-++..+-...+.+....++.|++|..|.+|+.++.+|+.+...+-
T Consensus 14 glsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHl 93 (1202)
T KOG0292|consen 14 GLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHL 93 (1202)
T ss_pred ceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcccc
Confidence 45677777789999899999999999999988888776655556777777777888999999999999999988766554
Q ss_pred ccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEECCCCCEEee
Q 002615 672 SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWR 751 (900)
Q Consensus 672 ~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d~~G~~~w~ 751 (900)
.......+...--.|+.++.|.+|..||-.+ ++.+-....+........+.+..+.|+.++-|.+|.+||-+|-..-.
T Consensus 94 DYVRt~~FHheyPWIlSASDDQTIrIWNwqs--r~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~ 171 (1202)
T KOG0292|consen 94 DYVRTVFFHHEYPWILSASDDQTIRIWNWQS--RKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKN 171 (1202)
T ss_pred ceeEEeeccCCCceEEEccCCCeEEEEeccC--CceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccC
Confidence 5555555554345678889999999999887 77776665555544555566778899999999999999944432211
Q ss_pred ecCC------------Cceeccc-c-cccc---------------CCCeEEEEeeCCeEEEEeCCCCceeeEEecCC---
Q 002615 752 CRTG------------GPIFAGP-C-TSFA---------------LPSQVLICSRNGSIYSFEQESGNLLWEYSVGD--- 799 (900)
Q Consensus 752 ~~~~------------~~~~~~~-~-~~~~---------------~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~--- 799 (900)
...+ ...+..+ + +... .-..|+.|+.|..|.+|.. +....|+.+.--
T Consensus 172 ~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrm-netKaWEvDtcrgH~ 250 (1202)
T KOG0292|consen 172 KAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM-NETKAWEVDTCRGHY 250 (1202)
T ss_pred CCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEe-ccccceeehhhhccc
Confidence 1111 1112111 1 1000 0124667777888888874 456678776422
Q ss_pred ceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecC
Q 002615 800 PITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 842 (900)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~ 842 (900)
+.+++..+.. ..++|...++|+.|++||.+..
T Consensus 251 nnVssvlfhp-----------~q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 251 NNVSSVLFHP-----------HQDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred CCcceEEecC-----------ccceeEecCCCccEEEEecccc
Confidence 2333333332 2689999999999999999866
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.9e-08 Score=106.02 Aligned_cols=216 Identities=9% Similarity=0.008 Sum_probs=158.6
Q ss_pred EEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEec
Q 002615 569 FICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGS 648 (900)
Q Consensus 569 l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs 648 (900)
+...|..++...-+.-.+.....+..++++..+++.++.|+.+..|...|-..+-.+..+...+....+.+.+-++.+++
T Consensus 433 ~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas 512 (707)
T KOG0263|consen 433 VDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATAS 512 (707)
T ss_pred hhhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecC
Confidence 44455555544444444444444678889988999999999999999988777666776655555555666666677789
Q ss_pred CCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCC
Q 002615 649 HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANR 728 (900)
Q Consensus 649 ~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~ 728 (900)
+|++...|....-+++..+..+-+-..+..+.++...+..|+.+.++..||..+ |..+-.+..+.....+..+++.+.
T Consensus 513 ~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~--G~~VRiF~GH~~~V~al~~Sp~Gr 590 (707)
T KOG0263|consen 513 HDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST--GNSVRIFTGHKGPVTALAFSPCGR 590 (707)
T ss_pred CCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCC--CcEEEEecCCCCceEEEEEcCCCc
Confidence 999998888777677766665555555566777778888899999999999998 888777777777778888888889
Q ss_pred EEEEEeecCcEEEEC-CCCCEEeeecCC-CceeccccccccCCCeEEEEeeCCeEEEEeCCC
Q 002615 729 HVICCLVDGHVVALD-SSGSIIWRCRTG-GPIFAGPCTSFALPSQVLICSRNGSIYSFEQES 788 (900)
Q Consensus 729 ~i~~~~~~g~v~~~d-~~G~~~w~~~~~-~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~t 788 (900)
++..|+.+|.|..|| .+|+++-++... +.+.+.. + ...++.+.+|+.|..|..||...
T Consensus 591 ~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~Sls-F-S~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 591 YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLS-F-SRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEE-E-ecCCCEEEecCCCCeEEEEEchh
Confidence 999999999999999 888887555433 2232222 1 22345677778899999998753
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.3e-08 Score=106.35 Aligned_cols=188 Identities=10% Similarity=-0.068 Sum_probs=152.1
Q ss_pred eCCceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceee
Q 002615 554 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 633 (900)
Q Consensus 554 ~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 633 (900)
..++.+|...|.|+.+..|.+.|-..+=.++.+......+.+++.|-+...++.|++-..|....-+.+-.+..+-.-..
T Consensus 460 sPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~ 539 (707)
T KOG0263|consen 460 SPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVD 539 (707)
T ss_pred cccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccc
Confidence 34678888899999999999998777666766655445566777776677788888888887766666655554433344
Q ss_pred eeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeec
Q 002615 634 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 713 (900)
Q Consensus 634 ~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 713 (900)
+..+.++..++.+||.|.++..||..+|..+..+..+.....+.++++.+..|..|+.+|.|..||+.+ |+++-+...
T Consensus 540 cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~--~~~v~~l~~ 617 (707)
T KOG0263|consen 540 CVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN--GSLVKQLKG 617 (707)
T ss_pred eEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCC--Ccchhhhhc
Confidence 456788889999999999999999999999999988777777777888778888899999999999998 888877777
Q ss_pred CCcceeeeeeeeCCCEEEEEeecCcEEEEC
Q 002615 714 EVPAFASLCITSANRHVICCLVDGHVVALD 743 (900)
Q Consensus 714 ~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d 743 (900)
+.....+..+..+++.+.+|+.|..|.+||
T Consensus 618 Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 618 HTGTIYSLSFSRDGNVLASGGADNSVRLWD 647 (707)
T ss_pred ccCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence 777777888888999999999999999998
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.5e-07 Score=97.12 Aligned_cols=257 Identities=10% Similarity=0.073 Sum_probs=172.5
Q ss_pred CCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEE
Q 002615 566 SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIW 645 (900)
Q Consensus 566 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~ 645 (900)
.+.+..||.+|++++.++..+ +..+..+.+.+.+|++|..+|.|-.||..+...+=+.+.++....+....+++...+
T Consensus 393 ~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~v 470 (888)
T KOG0306|consen 393 GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFV 470 (888)
T ss_pred CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceE
Confidence 456999999999999877666 344667888888999999999999999998887766666665555556666777788
Q ss_pred EecCCCeEEEEECCC-----CeEEE--------eeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEee
Q 002615 646 CGSHDHNLYALDFRN-----YRCVY--------KLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHE 712 (900)
Q Consensus 646 ~gs~dg~l~~~d~~~-----g~~~w--------~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~ 712 (900)
+|+.|.++..||-+- |.... ...+... ..+..+++++..|.++-.+.++..|-+++ -+..-+..
T Consensus 471 T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~dd-vL~v~~Spdgk~LaVsLLdnTVkVyflDt--lKFflsLY 547 (888)
T KOG0306|consen 471 TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDD-VLCVSVSPDGKLLAVSLLDNTVKVYFLDT--LKFFLSLY 547 (888)
T ss_pred EecCCcEEEEEeEEEEeccCcccceeeeeccceEEecccc-EEEEEEcCCCcEEEEEeccCeEEEEEecc--eeeeeeec
Confidence 999999999887531 21111 1111222 22334455567777788888888888877 66665665
Q ss_pred cCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeee-cCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCc
Q 002615 713 LEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRC-RTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGN 790 (900)
Q Consensus 713 ~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~-~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~ 790 (900)
.+.-...+..++++...++.|+.|.++-.|- .-|...-.+ ...+.+.+.-. .-.....|.++.||.+..||.+.-+
T Consensus 548 GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F--~P~~~~FFt~gKD~kvKqWDg~kFe 625 (888)
T KOG0306|consen 548 GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQF--LPKTHLFFTCGKDGKVKQWDGEKFE 625 (888)
T ss_pred ccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEE--cccceeEEEecCcceEEeechhhhh
Confidence 6655557778888899999999998887775 434332111 11122222211 1134467778899999999976555
Q ss_pred eeeEEecCC-ceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeec
Q 002615 791 LLWEYSVGD-PITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 841 (900)
Q Consensus 791 ~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~ 841 (900)
..-+++.+. .++..... +.|++++.++.|..|++|....
T Consensus 626 ~iq~L~~H~~ev~cLav~------------~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 626 EIQKLDGHHSEVWCLAVS------------PNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred hheeeccchheeeeeEEc------------CCCCeEEeccCCceeEeeeccC
Confidence 444444332 33333222 2388999999999999998764
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.84 E-value=5e-08 Score=96.69 Aligned_cols=260 Identities=10% Similarity=0.062 Sum_probs=155.9
Q ss_pred eEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeE
Q 002615 558 IYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVV 637 (900)
Q Consensus 558 ~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~ 637 (900)
..++.|+.||.|..||+.+-+++|.+..+.......++.. +. ++..+.|.+|..|.. .|..+.++.....+....
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~-~~tvgdDKtvK~wk~-~~~p~~tilg~s~~~gId-- 154 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TS-FFTVGDDKTVKQWKI-DGPPLHTILGKSVYLGID-- 154 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cc-eEEecCCcceeeeec-cCCcceeeeccccccccc--
Confidence 4688999999999999999999999998886666666665 33 444445777777763 344444443322221111
Q ss_pred eCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccC-CEEEEEeCCCcEEEEEcCCCCceeeeEeecCCc
Q 002615 638 DAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVH-DVLYVASTSGRLTAISVKALPFHTLWLHELEVP 716 (900)
Q Consensus 638 ~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~-~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~ 716 (900)
....+.+++.+ ...+-.||..--.++..+..+-....+.-+.+.. ..|..+..++.++.||... ++++.+......
T Consensus 155 h~~~~~~FaTc-Ge~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~--~~Pl~KVi~~mR 231 (433)
T KOG0268|consen 155 HHRKNSVFATC-GEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQ--ASPLKKVILTMR 231 (433)
T ss_pred ccccccccccc-CceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEeccc--CCccceeeeecc
Confidence 11123334333 3458889987766776666554433333333222 4455555899999999988 777766544322
Q ss_pred ceeeeeeeeCCCEEEEEeecCcEEEEC-CCC-CEEeeecCC-CceeccccccccCCCeEEEEeeCCeEEEEeCCCCceee
Q 002615 717 AFASLCITSANRHVICCLVDGHVVALD-SSG-SIIWRCRTG-GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLW 793 (900)
Q Consensus 717 ~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G-~~~w~~~~~-~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w 793 (900)
. ...+..+..-.+.+++.|..+|.+| ..- ..+-.+... ..+.... ..-.+..++.|++|..|..|....|.-.-
T Consensus 232 T-N~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVd--fsptG~EfvsgsyDksIRIf~~~~~~SRd 308 (433)
T KOG0268|consen 232 T-NTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVD--FSPTGQEFVSGSYDKSIRIFPVNHGHSRD 308 (433)
T ss_pred c-cceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEec--cCCCcchhccccccceEEEeecCCCcchh
Confidence 1 2334444444566778899999999 432 222222111 1111111 11235678999999999999988775432
Q ss_pred EEec--CCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEee
Q 002615 794 EYSV--GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 840 (900)
Q Consensus 794 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~ 840 (900)
.|.. -..+....+.. +..+|+.|+++|.|++|..+
T Consensus 309 iYhtkRMq~V~~Vk~S~------------Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 309 IYHTKRMQHVFCVKYSM------------DSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred hhhHhhhheeeEEEEec------------cccEEEecCCCcceeeeecc
Confidence 2211 11222222222 27899999999999999775
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.4e-06 Score=86.48 Aligned_cols=276 Identities=13% Similarity=0.082 Sum_probs=161.3
Q ss_pred CCCEEEEEeeC-----CEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecC----------CCeEEEEECCCCe
Q 002615 598 DFSQVVVGCYK-----GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH----------DHNLYALDFRNYR 662 (900)
Q Consensus 598 ~~~~i~vg~~d-----g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~----------dg~l~~~d~~~g~ 662 (900)
+..++||-... +.++.+|..+++.+-.+..+..... +++++++.+|++.. +..|..||.++++
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~~--~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~ 88 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPNP--VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL 88 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCce--eECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence 33456665543 7899999999999988887654443 36777888998755 6789999999999
Q ss_pred EEEeeccCCc-------cccCceeeccCCEEEEEeC--CCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEE
Q 002615 663 CVYKLPCGGS-------IFGSPAIDEVHDVLYVAST--SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICC 733 (900)
Q Consensus 663 ~~w~~~~~~~-------~~~~~~~~~~~~~l~v~t~--~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~ 733 (900)
.+.++..+.. ......+++++..+|+... +..+..+|+.+ ++.+-+...+.... .........+ +-
T Consensus 89 ~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~--~kvv~ei~vp~~~~--vy~t~e~~~~-~~ 163 (352)
T TIGR02658 89 PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEG--KAFVRMMDVPDCYH--IFPTANDTFF-MH 163 (352)
T ss_pred EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCC--CcEEEEEeCCCCcE--EEEecCCccE-EE
Confidence 9998887543 1223456666778998773 57899999888 88887776644221 1112222222 23
Q ss_pred eecCcEEEE--CCCCCEEee-ec----CCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCce----eeEEe-cCCce
Q 002615 734 LVDGHVVAL--DSSGSIIWR-CR----TGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNL----LWEYS-VGDPI 801 (900)
Q Consensus 734 ~~~g~v~~~--d~~G~~~w~-~~----~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~----~w~~~-~~~~~ 801 (900)
+.||....+ +.+|+..-. .. ...+++..|.... .++..++.+..|.|+.+|..+.+. .|... .....
T Consensus 164 ~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~-~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~ 242 (352)
T TIGR02658 164 CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSN-KSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKA 242 (352)
T ss_pred eecCceEEEEecCCCceEEeeeeeecCCccccccCCceEc-CCCcEEEEecCCeEEEEecCCCcceecceeeeccccccc
Confidence 345655443 355653311 11 1233444442222 244555455559999999544332 23321 11100
Q ss_pred ecccccccccccccccccCCCeEEEEEc----------CCCcEEEEEeecCcccccccccccceeeeeeeccCCccccCc
Q 002615 802 TASAYIDEHLQLKLESCLSIDRLVCICT----------SSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSP 871 (900)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~----------~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~ 871 (900)
..+....++. ......++.+|+.. ..+.|+++|..++ +.............-.
T Consensus 243 --~~wrP~g~q~--ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~-------------kvi~~i~vG~~~~~ia 305 (352)
T TIGR02658 243 --DGWRPGGWQQ--VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG-------------KRLRKIELGHEIDSIN 305 (352)
T ss_pred --cccCCCccee--EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC-------------eEEEEEeCCCceeeEE
Confidence 0000000000 11223478888853 2246999998876 5555555444332211
Q ss_pred ee-eCC-EEEEeee-CCeEEEEEccccccc
Q 002615 872 VM-IGG-RVFVGCR-DDYIYCIALETQHLE 898 (900)
Q Consensus 872 ~~-~~~-~l~vg~~-dg~l~~ld~~tg~~~ 898 (900)
+- ++. .||+.+. ++.|..+|..+++..
T Consensus 306 vS~Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 306 VSQDAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred ECCCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 11 456 7887774 677999999998764
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.8e-07 Score=96.60 Aligned_cols=265 Identities=14% Similarity=0.058 Sum_probs=169.9
Q ss_pred EEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeecc-CCccccCcee
Q 002615 601 QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC-GGSIFGSPAI 679 (900)
Q Consensus 601 ~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~-~~~~~~~~~~ 679 (900)
.+.||. ...+|+|+..+|++.-..+.+....++..+.+++..|.+|+.+|.+..||.++.+.+..+.. +..-+++..-
T Consensus 190 ~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW 268 (484)
T KOG0305|consen 190 VLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAW 268 (484)
T ss_pred eEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEec
Confidence 455553 44699999999998776666556667777888889999999999999999988777666655 3333333333
Q ss_pred eccCCEEEEEeCCCcEEEEEcCCCCceeeeE-eecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCC-
Q 002615 680 DEVHDVLYVASTSGRLTAISVKALPFHTLWL-HELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG- 756 (900)
Q Consensus 680 ~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~-~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~- 756 (900)
+...+-.|+.+|.+..+|... .+..-. ...+....-......++..+..|+.|+.++++| ..-+++.++....
T Consensus 269 --~~~~lssGsr~~~I~~~dvR~--~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~a 344 (484)
T KOG0305|consen 269 --NSSVLSSGSRDGKILNHDVRI--SQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTA 344 (484)
T ss_pred --cCceEEEecCCCcEEEEEEec--chhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccce
Confidence 347788899999999999876 433332 222333333445666788888899999999999 4444444443221
Q ss_pred ceeccccccccCCCeEEEE--eeCCeEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcE
Q 002615 757 PIFAGPCTSFALPSQVLIC--SRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSI 834 (900)
Q Consensus 757 ~~~~~~~~~~~~~~~l~~g--~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v 834 (900)
.+.... ...-..+.|.+| +.|+.|..||..+|+.+-....++.+.+..+.-.. .+-..-.|..++.|
T Consensus 345 AVKA~a-wcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~----------kEi~sthG~s~n~i 413 (484)
T KOG0305|consen 345 AVKALA-WCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKY----------KELLSTHGYSENQI 413 (484)
T ss_pred eeeEee-eCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCC----------CEEEEecCCCCCcE
Confidence 111111 111124455555 67999999999999998888877776555443321 01222345667788
Q ss_pred EEEEeecCcccccccccccceeeeeeeccCCccccCcee--eCCEEEEeeeCCeEEEEEccc
Q 002615 835 HILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCIALET 894 (900)
Q Consensus 835 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~--~~~~l~vg~~dg~l~~ld~~t 894 (900)
.+|+..+- +......-+...+-..+. ++..+.+|..|.+|..|+..+
T Consensus 414 ~lw~~ps~-------------~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 414 TLWKYPSM-------------KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred EEEecccc-------------ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 88876531 112222222221111222 467899999999999998765
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.5e-07 Score=92.33 Aligned_cols=195 Identities=12% Similarity=0.143 Sum_probs=129.6
Q ss_pred eceeEecCCCEEEEEeeCCEE--EEEECCCCcEEEEEecCCceeeeeeEeCCCC-EEEEecCCCeEEEEECCCCeEEEee
Q 002615 591 CSAAVLADFSQVVVGCYKGKI--YFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQ-LIWCGSHDHNLYALDFRNYRCVYKL 667 (900)
Q Consensus 591 ~~~~~~~~~~~i~vg~~dg~l--~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~-~i~~gs~dg~l~~~d~~~g~~~w~~ 667 (900)
.++.+.+....+.++..|+.+ |.+|-++...+.......-......+.+++. .|++++....+|.||+.++++....
T Consensus 217 ~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~ 296 (514)
T KOG2055|consen 217 TSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK 296 (514)
T ss_pred eEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccccccc
Confidence 356677777788899999975 5556455444444444443334445555555 7888898999999999998765433
Q ss_pred ccCCc---cccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-
Q 002615 668 PCGGS---IFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD- 743 (900)
Q Consensus 668 ~~~~~---~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d- 743 (900)
...+- ..-.-.++..+..|.+....|.|+.+...+ ++.+-..+..+.+ ....+..++..+|+++.+|.|+.||
T Consensus 297 ~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT--~eli~s~KieG~v-~~~~fsSdsk~l~~~~~~GeV~v~nl 373 (514)
T KOG2055|consen 297 PPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT--KELITSFKIEGVV-SDFTFSSDSKELLASGGTGEVYVWNL 373 (514)
T ss_pred CCCCcccchhheeEecCCCCeEEEcccCceEEeehhhh--hhhhheeeeccEE-eeEEEecCCcEEEEEcCCceEEEEec
Confidence 33221 111122334457888888899999998887 7777666665443 4556667788899998899999999
Q ss_pred CCCCEEeeecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCC
Q 002615 744 SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQES 788 (900)
Q Consensus 744 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~t 788 (900)
..-..+.++...+.+.............+.+|+..|.|..||.++
T Consensus 374 ~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 374 RQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred CCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence 666777666665555333211122344677788889999998543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.7e-06 Score=89.72 Aligned_cols=287 Identities=15% Similarity=0.142 Sum_probs=157.4
Q ss_pred ccccccccccccccceEEeeCCceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEee-CCEEEE
Q 002615 535 ELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYF 613 (900)
Q Consensus 535 ~~W~~~~~~~v~~sp~v~~~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~-dg~l~~ 613 (900)
.+-+++++....+. +....++.++|+.+.+|.|..+|+.++++..++..+... .+..++.+|.+++++++ .+.+..
T Consensus 28 ~~~~i~~~~~~h~~--~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~-~~i~~s~DG~~~~v~n~~~~~v~v 104 (369)
T PF02239_consen 28 VVARIPTGGAPHAG--LKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNP-RGIAVSPDGKYVYVANYEPGTVSV 104 (369)
T ss_dssp EEEEEE-STTEEEE--EE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEE-EEEEE--TTTEEEEEEEETTEEEE
T ss_pred EEEEEcCCCCceeE--EEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCc-ceEEEcCCCCEEEEEecCCCceeE
Confidence 34455555433222 223445778999999999999999999999998887664 36788899999999985 789999
Q ss_pred EECCCCcEEEEEecCCce------eeeeeEe-CCCC-EEEEecCCCeEEEEECCCCeEEEe--eccCCccccCceeeccC
Q 002615 614 LDYLTGDIYWTFQTCGEV------KCQPVVD-APRQ-LIWCGSHDHNLYALDFRNYRCVYK--LPCGGSIFGSPAIDEVH 683 (900)
Q Consensus 614 ~d~~tG~~~w~~~~~~~~------~~~~~~~-~~~~-~i~~gs~dg~l~~~d~~~g~~~w~--~~~~~~~~~~~~~~~~~ 683 (900)
+|.+|.+++.++.+++.. ....++. +.+. .++.--..+.++.+|..+.+.+.. ...+.. .-...+++++
T Consensus 105 ~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~-~~D~~~dpdg 183 (369)
T PF02239_consen 105 IDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRF-PHDGGFDPDG 183 (369)
T ss_dssp EETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TT-EEEEEE-TTS
T ss_pred eccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccccc-ccccccCccc
Confidence 999999998887664321 1222332 2333 233333447788888766543322 222221 1122445545
Q ss_pred CEEEEEe-CCCcEEEEEcCCCCceeeeEeecCCcce---eeeeeeeCCCEEEEEeecCc----------EEEEC-CCCCE
Q 002615 684 DVLYVAS-TSGRLTAISVKALPFHTLWLHELEVPAF---ASLCITSANRHVICCLVDGH----------VVALD-SSGSI 748 (900)
Q Consensus 684 ~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~~~~~~---~s~~~~~~~~~i~~~~~~g~----------v~~~d-~~G~~ 748 (900)
..++++. .+..+..+|.++ ++..+..+.+.... ....+.+..+-+|.-...+. +..++ .+.+.
T Consensus 184 ry~~va~~~sn~i~viD~~~--~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv 261 (369)
T PF02239_consen 184 RYFLVAANGSNKIAVIDTKT--GKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV 261 (369)
T ss_dssp SEEEEEEGGGTEEEEEETTT--TEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSE
T ss_pred ceeeecccccceeEEEeecc--ceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeE
Confidence 6666653 466788899887 88887766543221 11123334445554433222 22234 44555
Q ss_pred EeeecCCCc-eeccccccccCCCeEEEE----eeCCeEEEEeCCCCceeeEEecCCc--eecccccccccccccccccCC
Q 002615 749 IWRCRTGGP-IFAGPCTSFALPSQVLIC----SRNGSIYSFEQESGNLLWEYSVGDP--ITASAYIDEHLQLKLESCLSI 821 (900)
Q Consensus 749 ~w~~~~~~~-~~~~~~~~~~~~~~l~~g----~~dg~l~~~d~~tG~~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 821 (900)
+-+.+..+. .|... .-....+|+. ...+.|..+|.++-+..-++..... +.-.-+ ..+
T Consensus 262 v~~I~~~G~glFi~t---hP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef------------~~d 326 (369)
T PF02239_consen 262 VKTIPTQGGGLFIKT---HPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEF------------NPD 326 (369)
T ss_dssp EEEEE-SSSS--EE-----TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-------------TT
T ss_pred EEEEECCCCcceeec---CCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEE------------CCC
Confidence 555554332 22111 2245689988 3457899999998866544432222 222111 123
Q ss_pred CeEEEEEcCCC--cEEEEEeecC
Q 002615 822 DRLVCICTSSG--SIHILRVNLD 842 (900)
Q Consensus 822 ~~~l~~g~~~G--~v~~~d~~~~ 842 (900)
+..+|+...++ .|.+||.++.
T Consensus 327 G~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 327 GKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp SSEEEEEEE--TTEEEEEETTTT
T ss_pred CCEEEEEEecCCCEEEEEECCCc
Confidence 88888876654 5999999865
|
... |
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.8e-07 Score=101.68 Aligned_cols=182 Identities=13% Similarity=0.205 Sum_probs=126.5
Q ss_pred CCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeec-cCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCccee
Q 002615 641 RQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDE-VHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFA 719 (900)
Q Consensus 641 ~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~-~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~ 719 (900)
++.|+..+-|.++..|++...+|+..|.....+ .+..+.+ +++..+.|+.||.+..|++.. -++..-.++. ..+.
T Consensus 380 n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfV-TcVaFnPvDDryFiSGSLD~KvRiWsI~d--~~Vv~W~Dl~-~lIT 455 (712)
T KOG0283|consen 380 NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFV-TCVAFNPVDDRYFISGSLDGKVRLWSISD--KKVVDWNDLR-DLIT 455 (712)
T ss_pred CCeeEeccccccEEeecCCCcceeeEEecCCee-EEEEecccCCCcEeecccccceEEeecCc--CeeEeehhhh-hhhe
Confidence 577889999999999999999999888765544 4444444 345677799999999999886 4444333443 5557
Q ss_pred eeeeeeCCCEEEEEeecCcEEEECCCC-CEE--eeecC-------CCceeccccccccCCCeEEEEeeCCeEEEEeCCCC
Q 002615 720 SLCITSANRHVICCLVDGHVVALDSSG-SII--WRCRT-------GGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESG 789 (900)
Q Consensus 720 s~~~~~~~~~i~~~~~~g~v~~~d~~G-~~~--w~~~~-------~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG 789 (900)
+.++.++++..++|+.+|..+.|+..| +.. |++.. +..|...-+... ..+.|++.+.|..|..||..+-
T Consensus 456 Avcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~-~~~~vLVTSnDSrIRI~d~~~~ 534 (712)
T KOG0283|consen 456 AVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPG-DPDEVLVTSNDSRIRIYDGRDK 534 (712)
T ss_pred eEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCC-CCCeEEEecCCCceEEEeccch
Confidence 888899999999999999999999433 332 33321 112222222222 2347999999999999998777
Q ss_pred ceeeEEecCCce---ecccccccccccccccccCCCeEEEEEcCCCcEEEEEe
Q 002615 790 NLLWEYSVGDPI---TASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 839 (900)
Q Consensus 790 ~~~w~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~ 839 (900)
+++-+++-.... ....+. .++..|+++++|..||+|+.
T Consensus 535 ~lv~KfKG~~n~~SQ~~Asfs------------~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 535 DLVHKFKGFRNTSSQISASFS------------SDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred hhhhhhcccccCCcceeeeEc------------cCCCEEEEeecCceEEEEeC
Confidence 777665522211 111111 23889999999999999986
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.9e-07 Score=93.05 Aligned_cols=231 Identities=13% Similarity=0.093 Sum_probs=142.9
Q ss_pred CceEEEEecCCCeEEEEECCCC-cEEEEEecCC-----------c-----eeece--eEe---cCCCEEEEEeeCCEEEE
Q 002615 556 SDIYLFVGSHSHKFICADAKRS-SVLWEIKLEG-----------R-----IECSA--AVL---ADFSQVVVGCYKGKIYF 613 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG-~~~w~~~~~~-----------~-----~~~~~--~~~---~~~~~i~vg~~dg~l~~ 613 (900)
.++++.+|+.+-.|-.||++-- .+.-.+.++. + -.+.+ .++ .-.+.++.|+.|.+|..
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 3569999999999999998531 1111122210 0 00000 011 11246788999999999
Q ss_pred EECCCCcEEEEEecCCceeeeeeEeC-CCCEEEEecCCCeEEEEECC---CCeEEEeeccCCc-cccCceeeccCCEEEE
Q 002615 614 LDYLTGDIYWTFQTCGEVKCQPVVDA-PRQLIWCGSHDHNLYALDFR---NYRCVYKLPCGGS-IFGSPAIDEVHDVLYV 688 (900)
Q Consensus 614 ~d~~tG~~~w~~~~~~~~~~~~~~~~-~~~~i~~gs~dg~l~~~d~~---~g~~~w~~~~~~~-~~~~~~~~~~~~~l~v 688 (900)
||..+|+..-.+..++.-+.+..+.+ ....++.|++|+++...|.+ .-...|++...-. +...+. .....++
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~---se~~f~~ 347 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPH---SENSFFV 347 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCC---CceeEEE
Confidence 99999999888775544444444443 45678899999999999987 4456677754321 111121 1367888
Q ss_pred EeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeC-CCEEEEEeecCcEEEEC---CCCCEEeeecCCCceeccccc
Q 002615 689 ASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSA-NRHVICCLVDGHVVALD---SSGSIIWRCRTGGPIFAGPCT 764 (900)
Q Consensus 689 ~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~-~~~i~~~~~~g~v~~~d---~~G~~~w~~~~~~~~~~~~~~ 764 (900)
+|.+|.++.+|.+. .|+++|+.+.+...+++..+... .+.+..++.++.+..++ .+++.+......-........
T Consensus 348 ~tddG~v~~~D~R~-~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~ 426 (463)
T KOG0270|consen 348 STDDGTVYYFDIRN-PGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFAL 426 (463)
T ss_pred ecCCceEEeeecCC-CCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeeccc
Confidence 99999999999986 57999999988776666555332 45666677777777776 233322211111111111111
Q ss_pred cccCCCeEEEEeeCCeEEEEeCCCCc
Q 002615 765 SFALPSQVLICSRNGSIYSFEQESGN 790 (900)
Q Consensus 765 ~~~~~~~l~~g~~dg~l~~~d~~tG~ 790 (900)
.......+.+|...+.+..||..++.
T Consensus 427 ~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 427 DPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred CCCcceEEEecCccceEEEeecccCh
Confidence 12234567777777778888876654
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.3e-06 Score=81.75 Aligned_cols=219 Identities=10% Similarity=0.043 Sum_probs=146.1
Q ss_pred CCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEE
Q 002615 586 EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVY 665 (900)
Q Consensus 586 ~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w 665 (900)
+.|.....-+..+|+.++..+.|....+|-..+|+.+-++..+.....+.-++-+...+++|+.|..+..||.++|+++.
T Consensus 9 HERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la 88 (327)
T KOG0643|consen 9 HERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLA 88 (327)
T ss_pred CccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEE
Confidence 33434445566778888988889888888888999998888776555555566667889999999999999999999998
Q ss_pred eeccCCccccCceeeccCCEEEEEeC-----CCcEEEEEcCCCC-----ceeeeEeecCCcceeeeeeeeCCCEEEEEee
Q 002615 666 KLPCGGSIFGSPAIDEVHDVLYVAST-----SGRLTAISVKALP-----FHTLWLHELEVPAFASLCITSANRHVICCLV 735 (900)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~l~v~t~-----~g~l~~~~~~~~~-----g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~ 735 (900)
.++.+.++...-.... ++.+.+.+. .+.+..+|+...+ -+++.....+.....+....+.+..++.|..
T Consensus 89 ~~k~~~~Vk~~~F~~~-gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe 167 (327)
T KOG0643|consen 89 TWKTNSPVKRVDFSFG-GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHE 167 (327)
T ss_pred EeecCCeeEEEeeccC-CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecC
Confidence 8777666554433322 344444442 3567777776422 1234444444333344455566889999999
Q ss_pred cCcEEEEC-CCCCEEeeecC-CCceeccccccccCCCe-EEEEeeCCeEEEEeCCCCceeeEEecCCceeccccc
Q 002615 736 DGHVVALD-SSGSIIWRCRT-GGPIFAGPCTSFALPSQ-VLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYI 807 (900)
Q Consensus 736 ~g~v~~~d-~~G~~~w~~~~-~~~~~~~~~~~~~~~~~-l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~ 807 (900)
+|.|..|| .+|++.-.-.. ....... +....+.. .+.++.|.+-..+|..+-+++-+|....++.+.++.
T Consensus 168 ~G~is~~da~~g~~~v~s~~~h~~~Ind--~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aais 240 (327)
T KOG0643|consen 168 DGSISIYDARTGKELVDSDEEHSSKIND--LQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAIS 240 (327)
T ss_pred CCcEEEEEcccCceeeechhhhcccccc--ccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecc
Confidence 99999999 88876533211 1111111 11222334 555678889999999998888888877776655443
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-06 Score=88.95 Aligned_cols=232 Identities=11% Similarity=0.047 Sum_probs=151.6
Q ss_pred ceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeee
Q 002615 557 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPV 636 (900)
Q Consensus 557 ~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~ 636 (900)
...+..|..|..+.++|..+++.+-.++.+..-.+...+.++...+.+++.|-.++.|...+-...-....+...+....
T Consensus 231 ~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls 310 (506)
T KOG0289|consen 231 SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLS 310 (506)
T ss_pred CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeee
Confidence 45677888888899999999999887877766556677777777889999999999998765543333333333333344
Q ss_pred EeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCC--ccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecC
Q 002615 637 VDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG--SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE 714 (900)
Q Consensus 637 ~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~--~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~ 714 (900)
..+.+.+++.++.|++....|..+|..+-+....+ --+.+..+.+++-.+-.|+.+|.+..||++. +...-++..+
T Consensus 311 ~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks--~~~~a~Fpgh 388 (506)
T KOG0289|consen 311 LHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS--QTNVAKFPGH 388 (506)
T ss_pred eccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC--ccccccCCCC
Confidence 56678889999999988888999999887765532 2355666777444445577899999999987 5556566555
Q ss_pred CcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecC--CCceeccccccccC-CCeEEEEeeCCeEEEEeCCCCc
Q 002615 715 VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT--GGPIFAGPCTSFAL-PSQVLICSRNGSIYSFEQESGN 790 (900)
Q Consensus 715 ~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~--~~~~~~~~~~~~~~-~~~l~~g~~dg~l~~~d~~tG~ 790 (900)
.....+..+..++=.+.+++.|+.|.+|| ..-+..-++.. ..++.+. .++. +..+.+++.+=.||.++.. +
T Consensus 389 t~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~---~fD~SGt~L~~~g~~l~Vy~~~k~--~ 463 (506)
T KOG0289|consen 389 TGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSL---SFDQSGTYLGIAGSDLQVYICKKK--T 463 (506)
T ss_pred CCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeE---EEcCCCCeEEeecceeEEEEEecc--c
Confidence 54445555554444466677788899999 54332222222 2222222 2333 3355566555556666543 4
Q ss_pred eeeEE
Q 002615 791 LLWEY 795 (900)
Q Consensus 791 ~~w~~ 795 (900)
-.|+.
T Consensus 464 k~W~~ 468 (506)
T KOG0289|consen 464 KSWTE 468 (506)
T ss_pred cccee
Confidence 45753
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3e-07 Score=93.80 Aligned_cols=230 Identities=12% Similarity=0.108 Sum_probs=145.1
Q ss_pred CCCEEEEEeeCCEEEEEECCCCcE-EEEEecC----------------Cceee----eeeE-eCCCCEEEEecCCCeEEE
Q 002615 598 DFSQVVVGCYKGKIYFLDYLTGDI-YWTFQTC----------------GEVKC----QPVV-DAPRQLIWCGSHDHNLYA 655 (900)
Q Consensus 598 ~~~~i~vg~~dg~l~~~d~~tG~~-~w~~~~~----------------~~~~~----~~~~-~~~~~~i~~gs~dg~l~~ 655 (900)
.|+++.+|+.+-.|-.||+.=-.. .-.+..+ ....+ ...+ -...+.|..|+.|.+|..
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 356899999999999998642111 1111111 00000 0111 112467888999999999
Q ss_pred EECCCCeEEEeeccCCccccCce-eeccCCEEEEEeCCCcEEEEEcCC-CCceeeeEeecCCcceeeeeeee-CCCEEEE
Q 002615 656 LDFRNYRCVYKLPCGGSIFGSPA-IDEVHDVLYVASTSGRLTAISVKA-LPFHTLWLHELEVPAFASLCITS-ANRHVIC 732 (900)
Q Consensus 656 ~d~~~g~~~w~~~~~~~~~~~~~-~~~~~~~l~v~t~~g~l~~~~~~~-~~g~~~w~~~~~~~~~~s~~~~~-~~~~i~~ 732 (900)
||..+|++.-.+...+....+.. .......|+.|+.++++...|.+. ......|++....... .... ....+++
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv---~w~~~se~~f~~ 347 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV---AWDPHSENSFFV 347 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE---EecCCCceeEEE
Confidence 99999999988875544333333 333346788899999999999772 1244678776543221 1211 2456788
Q ss_pred EeecCcEEEEC--CCCCEEeeecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCcee--e--EEecCCceecccc
Q 002615 733 CLVDGHVVALD--SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLL--W--EYSVGDPITASAY 806 (900)
Q Consensus 733 ~~~~g~v~~~d--~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~--w--~~~~~~~~~~~~~ 806 (900)
++.+|.++-+| +.|+.+|+......-.++.++.....+.+..++.++.|..|+...-... . .++++- ....
T Consensus 348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~r--l~c~- 424 (463)
T KOG0270|consen 348 STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGR--LHCF- 424 (463)
T ss_pred ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccc--eeec-
Confidence 88999999999 6789999988765555555555666778888888998888876433221 1 111111 1110
Q ss_pred cccccccccccccCCCeEEEEEcCCCcEEEEEeecC
Q 002615 807 IDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 842 (900)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~ 842 (900)
..+......+.+|+..+.+.+||..++
T Consensus 425 ---------~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 425 ---------ALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred ---------ccCCCcceEEEecCccceEEEeecccC
Confidence 011223678888888888999998754
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.5e-06 Score=80.24 Aligned_cols=245 Identities=15% Similarity=0.104 Sum_probs=159.1
Q ss_pred CceEEEEecCCCeEEEEECCCCcEEEE--EecCC-ceeeceeEec-CCCEEEEEeeCCEEEEEECCCCcEEEEEecCCce
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWE--IKLEG-RIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV 631 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~~~w~--~~~~~-~~~~~~~~~~-~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~ 631 (900)
.+.++..|+.++.+..|+..-++.+-+ ...+. .+. ..+..+ ..+.+++.+.|..+..||...++..-.....++.
T Consensus 31 ~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svd-ql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en 109 (313)
T KOG1407|consen 31 DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVD-QLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGEN 109 (313)
T ss_pred cCceeeecccCCceEEEEecchhhhhhhcccCCCcchh-hheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcc
Confidence 566788899999999898876654422 22222 222 223332 3346777888899999999999998777665433
Q ss_pred eeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeC-CCcEEEEEcCCCCceeeeE
Q 002615 632 KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST-SGRLTAISVKALPFHTLWL 710 (900)
Q Consensus 632 ~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~w~ 710 (900)
.. ..+.++++++.++..|..|..+|.++-++.-..+..-.. .-.+.. ..+.+++.|. .|.+-.+.... -+++..
T Consensus 110 i~-i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~-ne~~w~-~~nd~Fflt~GlG~v~ILsyps--Lkpv~s 184 (313)
T KOG1407|consen 110 IN-ITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEV-NEISWN-NSNDLFFLTNGLGCVEILSYPS--LKPVQS 184 (313)
T ss_pred eE-EEEcCCCCEEEEecCcccEEEEEecccceeehhccccee-eeeeec-CCCCEEEEecCCceEEEEeccc--cccccc
Confidence 22 356678899999999999999999887766443321111 111112 2345555554 48888887665 677777
Q ss_pred eecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeec-CCCceecccccccc-CCCeEEEEeeCCeEEEEeCC
Q 002615 711 HELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCR-TGGPIFAGPCTSFA-LPSQVLICSRNGSIYSFEQE 787 (900)
Q Consensus 711 ~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~-~~~~~~~~~~~~~~-~~~~l~~g~~dg~l~~~d~~ 787 (900)
.+.+........+.+++.++.+|+.|..+-.|| ..--.+-.++ ..-|+-.. ++. .+..|..++.|..|-.-+.+
T Consensus 185 i~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTl---SFS~dg~~lASaSEDh~IDIA~ve 261 (313)
T KOG1407|consen 185 IKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTL---SFSHDGRMLASASEDHFIDIAEVE 261 (313)
T ss_pred cccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEE---EeccCcceeeccCccceEEeEecc
Confidence 777665555666777888999999998888888 3221111111 12222221 122 24456777889888888999
Q ss_pred CCceeeEEecCCceeccccccc
Q 002615 788 SGNLLWEYSVGDPITASAYIDE 809 (900)
Q Consensus 788 tG~~~w~~~~~~~~~~~~~~~~ 809 (900)
||..+|+++..++.++.+....
T Consensus 262 tGd~~~eI~~~~~t~tVAWHPk 283 (313)
T KOG1407|consen 262 TGDRVWEIPCEGPTFTVAWHPK 283 (313)
T ss_pred cCCeEEEeeccCCceeEEecCC
Confidence 9999999998888766655443
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-07 Score=94.94 Aligned_cols=235 Identities=11% Similarity=-0.011 Sum_probs=151.3
Q ss_pred ceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeecc-C
Q 002615 592 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC-G 670 (900)
Q Consensus 592 ~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~-~ 670 (900)
.+..+++|..+++|++.|.+-.|+..+-...-..+.++..+....+..++..++.|+.+|.|..|++.-..+. .++. .
T Consensus 101 ~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk-~~~ahh 179 (464)
T KOG0284|consen 101 VVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK-IIQAHH 179 (464)
T ss_pred eEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH-HhhHhh
Confidence 4567889899999999999999984221111112234555555566667788889999999999986533222 2221 2
Q ss_pred CccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEE
Q 002615 671 GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSII 749 (900)
Q Consensus 671 ~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~ 749 (900)
..-+...++++++.....++.+|.+..||... .+..-....+.-...+....+..+.|++|+.|..|-.+| ++|+.+
T Consensus 180 ~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~--~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl 257 (464)
T KOG0284|consen 180 AEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM--PKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCL 257 (464)
T ss_pred hhhhheeccCCCCceeEEecCCCeEEEEeccC--CchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchh
Confidence 12233344555567788889999999999765 333323333333345566667789999999999999999 899877
Q ss_pred eeecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEc
Q 002615 750 WRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICT 829 (900)
Q Consensus 750 w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 829 (900)
-+........... ......+.|..++.|..+..||..+-+.+..+..+..-+....... ...+++.+|+
T Consensus 258 ~tlh~HKntVl~~-~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP----------~~~~lftsgg 326 (464)
T KOG0284|consen 258 ATLHGHKNTVLAV-KFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHP----------LNESLFTSGG 326 (464)
T ss_pred hhhhhccceEEEE-EEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccc----------ccccceeecc
Confidence 5543322211111 1122346788999999999999986666666654443322221111 1267888899
Q ss_pred CCCcEEEEEee
Q 002615 830 SSGSIHILRVN 840 (900)
Q Consensus 830 ~~G~v~~~d~~ 840 (900)
.||.|+.|...
T Consensus 327 ~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 327 SDGSVVHWVVG 337 (464)
T ss_pred CCCceEEEecc
Confidence 99999999775
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.3e-07 Score=99.62 Aligned_cols=184 Identities=13% Similarity=0.065 Sum_probs=136.3
Q ss_pred CceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEec-CCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeee
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 634 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~-~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 634 (900)
++++|...|+|.++..|++.+.+++-.+...+- .+++.+.+ |+.+++.||-||.+..|+..+.++.--.+.. .++++
T Consensus 379 Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~Hndf-VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITA 456 (712)
T KOG0283|consen 379 KNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDF-VTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITA 456 (712)
T ss_pred cCCeeEeccccccEEeecCCCcceeeEEecCCe-eEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhhee
Confidence 578999999999999999999999977765554 45677765 5678999999999999999988876545665 45566
Q ss_pred eeEeCCCCEEEEecCCCeEEEEECCCCeEEEeecc---------CCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCc
Q 002615 635 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC---------GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPF 705 (900)
Q Consensus 635 ~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~---------~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g 705 (900)
.++.++++..++|+.+|..+.|+...-+..-..++ ++.+.+--+.....+.|+|.+.|..|..||..+ -
T Consensus 457 vcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~--~ 534 (712)
T KOG0283|consen 457 VCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD--K 534 (712)
T ss_pred EEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccc--h
Confidence 77888899999999999999999887666544332 122333333333346799999999999999854 3
Q ss_pred eeeeEeecCC--cceeeeeeeeCCCEEEEEeecCcEEEEC
Q 002615 706 HTLWLHELEV--PAFASLCITSANRHVICCLVDGHVVALD 743 (900)
Q Consensus 706 ~~~w~~~~~~--~~~~s~~~~~~~~~i~~~~~~g~v~~~d 743 (900)
+++-.++... .......+..++..|++++.|..||.|+
T Consensus 535 ~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 535 DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWK 574 (712)
T ss_pred hhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEe
Confidence 3443333211 1123445666889999999999999998
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.4e-06 Score=81.36 Aligned_cols=202 Identities=15% Similarity=0.078 Sum_probs=144.3
Q ss_pred ceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeee
Q 002615 557 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPV 636 (900)
Q Consensus 557 ~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~ 636 (900)
...+..++.+..+..||..++++.-.....+.. ...+.+++|+++.+|..|..|..+|..+-++.-.++..-.+.- ..
T Consensus 77 ~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne-~~ 154 (313)
T KOG1407|consen 77 PDLFATASGDKTIRIWDIRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNE-IS 154 (313)
T ss_pred CcceEEecCCceEEEEEeccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeee-ee
Confidence 445677888889999999999998877665432 2568889999999999999999999988887765544332221 12
Q ss_pred EeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCc
Q 002615 637 VDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVP 716 (900)
Q Consensus 637 ~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~ 716 (900)
+..++...+..+..|.+-.+....-+++..++.+...-.+..+++.+..+.+|+.+..+..||++. --.+-.+....-
T Consensus 155 w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E--LiC~R~isRldw 232 (313)
T KOG1407|consen 155 WNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE--LICERCISRLDW 232 (313)
T ss_pred ecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH--hhhheeeccccC
Confidence 333345555555568888888777777777776654444455677788899999999999999775 222222222222
Q ss_pred ceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCCceeccc
Q 002615 717 AFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGP 762 (900)
Q Consensus 717 ~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~~~~~~ 762 (900)
...+..+..++.++..++.|-.|-.-+ .+|..+|+++..++.++..
T Consensus 233 pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVA 279 (313)
T KOG1407|consen 233 PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVA 279 (313)
T ss_pred ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEE
Confidence 234556666788888888887777777 8999999999888776654
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.8e-07 Score=87.20 Aligned_cols=187 Identities=14% Similarity=0.166 Sum_probs=114.2
Q ss_pred CEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeC--CCCEEEEecCCCeEEEEECCCCeEEEeeccC---Cccc
Q 002615 600 SQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDA--PRQLIWCGSHDHNLYALDFRNYRCVYKLPCG---GSIF 674 (900)
Q Consensus 600 ~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~---~~~~ 674 (900)
..+.++..+|.+.+||..||+.+-.|+..........+.. ....|++++.||+|.+||+++....-++... +..+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4588999999999999999988877765443322222222 4567899999999999999876544333332 2233
Q ss_pred cCceeeccCCEEEEEeC----CCcEEEEEcCCCCcee-eeEe-ecCCcceeeeeeeeC-CCEEEEEeecCcEEEECCCCC
Q 002615 675 GSPAIDEVHDVLYVAST----SGRLTAISVKALPFHT-LWLH-ELEVPAFASLCITSA-NRHVICCLVDGHVVALDSSGS 747 (900)
Q Consensus 675 ~~~~~~~~~~~l~v~t~----~g~l~~~~~~~~~g~~-~w~~-~~~~~~~~s~~~~~~-~~~i~~~~~~g~v~~~d~~G~ 747 (900)
.+....-.++.+..||. +-.++.||.+. -++ +-.+ +.+........+.+. .+.+..|+.||.+.+||.++.
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~--~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRS--EQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEecc--ccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 33333223456666663 45678888775 222 1111 122233344445444 568889999999999993222
Q ss_pred -----EEeeecCCCceeccccccccCCC--eEEEEeeCCeEEEEeCCCCce
Q 002615 748 -----IIWRCRTGGPIFAGPCTSFALPS--QVLICSRNGSIYSFEQESGNL 791 (900)
Q Consensus 748 -----~~w~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~l~~~d~~tG~~ 791 (900)
++..+..+..+.. +....++ .||+-++.+..+.|+.+.|..
T Consensus 199 ~EeDaL~~viN~~sSI~~---igw~~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 199 NEEDALLHVINHGSSIHL---IGWLSKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred cchhhHHHhhcccceeee---eeeecCCcceEEEEEccCceeEEEccCCCh
Confidence 1122222222211 1222233 799999999999999988874
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.4e-05 Score=73.42 Aligned_cols=262 Identities=11% Similarity=0.157 Sum_probs=157.0
Q ss_pred EEEEecCCCeEEEEECCCCcEEEEEe-----cCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEE--EecCC-c
Q 002615 559 YLFVGSHSHKFICADAKRSSVLWEIK-----LEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWT--FQTCG-E 630 (900)
Q Consensus 559 ~v~igs~~g~l~~~d~~tG~~~w~~~-----~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~--~~~~~-~ 630 (900)
.++.++.|..|..|+...+.- |... .+.+...++..++.+.++.++++|.++..|...+|+..-. .+.+. +
T Consensus 29 ilAscg~Dk~vriw~~~~~~s-~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnE 107 (312)
T KOG0645|consen 29 ILASCGTDKAVRIWSTSSGDS-WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENE 107 (312)
T ss_pred EEEeecCCceEEEEecCCCCc-EEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccc
Confidence 467788889999999875332 5433 2345556788999999999999999999998777765443 33333 4
Q ss_pred eeeeeeEeCCCCEEEEecCCCeEEEEECCCCe---EEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcC-CCCce
Q 002615 631 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR---CVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVK-ALPFH 706 (900)
Q Consensus 631 ~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~---~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~-~~~g~ 706 (900)
+++ .++..++++|.+++.|..++.|....+. +.-..+.+..-.-..+..+..+.|+.++.+..+..|.-. ..+-.
T Consensus 108 VK~-Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~ 186 (312)
T KOG0645|consen 108 VKC-VAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWE 186 (312)
T ss_pred eeE-EEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCee
Confidence 554 4677788999999999999999766433 222222221111112233345788899999999888755 21222
Q ss_pred eeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCCceeccccccccCCCeEEEEeeCCeEEEEe
Q 002615 707 TLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFE 785 (900)
Q Consensus 707 ~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d 785 (900)
...++..+....-+..+...+.++.+++.|+.+..+. .++ |......+++..| -. ++.|..++.|+.+..|.
T Consensus 187 c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~---W~-~~~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 187 CVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVP---WD-NGVIASGGGDDAIRLFK 259 (312)
T ss_pred EEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC---cchhcccceEeee---ec-ccceEeccCCCEEEEEE
Confidence 3333333333333444455566788888777766654 211 1111123334343 22 56788888888888876
Q ss_pred CCCC--ceeeEEe-----cCC-ceecccccccccccccccccCCCeEEEEEcCCCcEEEEEee
Q 002615 786 QESG--NLLWEYS-----VGD-PITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 840 (900)
Q Consensus 786 ~~tG--~~~w~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~ 840 (900)
..++ ...|..- .+. .+.+.... ....+++..|++||.+.+|...
T Consensus 260 ~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~-----------p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 260 ESDSPDEPSWNLLAKKEGAHEVDVNSVQWN-----------PKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ecCCCCCchHHHHHhhhcccccccceEEEc-----------CCCCCceeecCCCceEEEEEec
Confidence 5432 1233211 111 11111111 1126789999999999998653
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.8e-05 Score=75.89 Aligned_cols=259 Identities=14% Similarity=0.137 Sum_probs=163.8
Q ss_pred CeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEee----------CCEEEEEECCCCcEEEEEecCCcee----
Q 002615 567 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY----------KGKIYFLDYLTGDIYWTFQTCGEVK---- 632 (900)
Q Consensus 567 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~----------dg~l~~~d~~tG~~~w~~~~~~~~~---- 632 (900)
++++.+|.++|+.+-....+-. ....++++++.+|+.+. .-.|-.||.+|-++.+.+.++....
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~--~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFL--GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESS--EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecccC--CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 5899999999999887766543 24678899999997532 2358899999999999887765311
Q ss_pred ---eeeeEeCCCCEEEEe--cCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCcee
Q 002615 633 ---CQPVVDAPRQLIWCG--SHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHT 707 (900)
Q Consensus 633 ---~~~~~~~~~~~i~~g--s~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~ 707 (900)
....+..++..+|+- +-...|-.+|.+.++.+-.+...|....-|.- ++..+.-+.||.+..+.++. .|+.
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~---~~~F~~lC~DGsl~~v~Ld~-~Gk~ 170 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSG---NRGFSMLCGDGSLLTVTLDA-DGKE 170 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEE---TTEEEEEETTSCEEEEEETS-TSSE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecC---CCceEEEecCCceEEEEECC-CCCE
Confidence 122344556666663 33456888999999999888888765554432 35677778899999998884 3776
Q ss_pred eeEee-----cCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEE----eeecC-----CCceeccc--cccccCCC
Q 002615 708 LWLHE-----LEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSII----WRCRT-----GGPIFAGP--CTSFALPS 770 (900)
Q Consensus 708 ~w~~~-----~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~----w~~~~-----~~~~~~~~--~~~~~~~~ 770 (900)
.-+.. ...+.|..+.....++.++.-+++|.++..| ...... |..-. .+.--..- .......+
T Consensus 171 ~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~ 250 (342)
T PF06433_consen 171 AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASG 250 (342)
T ss_dssp EEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTT
T ss_pred eEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccC
Confidence 53221 1223445555555677888889999999999 444332 43321 01000000 00122456
Q ss_pred eEEEEeeCC----------eEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEE-cCCCcEEEEEe
Q 002615 771 QVLICSRNG----------SIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCIC-TSSGSIHILRV 839 (900)
Q Consensus 771 ~l~~g~~dg----------~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-~~~G~v~~~d~ 839 (900)
.+|+--+.| .|+.||.++++.+-++++..++.+.....+ ...++|.. ..+|.|+++|.
T Consensus 251 rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd-----------~~P~L~~~~~~~~~l~v~D~ 319 (342)
T PF06433_consen 251 RLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQD-----------DKPLLYALSAGDGTLDVYDA 319 (342)
T ss_dssp EEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESS-----------SS-EEEEEETTTTEEEEEET
T ss_pred eEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccC-----------CCcEEEEEcCCCCeEEEEeC
Confidence 788765433 589999999998887776655433222211 25567654 45789999999
Q ss_pred ecC
Q 002615 840 NLD 842 (900)
Q Consensus 840 ~~~ 842 (900)
.+|
T Consensus 320 ~tG 322 (342)
T PF06433_consen 320 ATG 322 (342)
T ss_dssp TT-
T ss_pred cCC
Confidence 987
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1e-06 Score=89.56 Aligned_cols=227 Identities=14% Similarity=0.145 Sum_probs=143.9
Q ss_pred CCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceee
Q 002615 641 RQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFAS 720 (900)
Q Consensus 641 ~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s 720 (900)
...+.+|..|..+.++|..+++.+-.++.+..-.......++...+..++.+-.++.|.....+ ..-....+......
T Consensus 231 ~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s--~~~~~~~h~~~V~~ 308 (506)
T KOG0289|consen 231 SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS--EPTSSRPHEEPVTG 308 (506)
T ss_pred CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc--Ccccccccccccee
Confidence 3568888888899999988877776665544444444455555678888888888888765422 11112222222234
Q ss_pred eeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCCc-e-eccccccccCCCeEE-EEeeCCeEEEEeCCCCceeeEEe
Q 002615 721 LCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP-I-FAGPCTSFALPSQVL-ICSRNGSIYSFEQESGNLLWEYS 796 (900)
Q Consensus 721 ~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~-~-~~~~~~~~~~~~~l~-~g~~dg~l~~~d~~tG~~~w~~~ 796 (900)
....+.+++++.++.++.....| .+|..+-....... + +.+. .+-.||.|+ .|+.||.|..||.+++.-.-+|.
T Consensus 309 ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~--~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp 386 (506)
T KOG0289|consen 309 LSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSA--AFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP 386 (506)
T ss_pred eeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEe--eEcCCceEEeccCCCceEEEEEcCCccccccCC
Confidence 44556788999888888777777 88988766554321 1 1221 233355554 45789999999999988777777
Q ss_pred cCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecCcccccccccccceeeeeeeccCCc-cccCcee--
Q 002615 797 VGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGD-IFSSPVM-- 873 (900)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ss~~~-- 873 (900)
.+...+....+.++ |-+++++++||.|.+||.+.- +.+..+.++.. -..+..+
T Consensus 387 ght~~vk~i~FsEN-----------GY~Lat~add~~V~lwDLRKl-------------~n~kt~~l~~~~~v~s~~fD~ 442 (506)
T KOG0289|consen 387 GHTGPVKAISFSEN-----------GYWLATAADDGSVKLWDLRKL-------------KNFKTIQLDEKKEVNSLSFDQ 442 (506)
T ss_pred CCCCceeEEEeccC-----------ceEEEEEecCCeEEEEEehhh-------------cccceeeccccccceeEEEcC
Confidence 66555555444443 778888999999999999854 23333333321 1122222
Q ss_pred eCCEEEEeeeCCeEEEEEcccc
Q 002615 874 IGGRVFVGCRDDYIYCIALETQ 895 (900)
Q Consensus 874 ~~~~l~vg~~dg~l~~ld~~tg 895 (900)
.+.+|.+++.+=++|.++..+.
T Consensus 443 SGt~L~~~g~~l~Vy~~~k~~k 464 (506)
T KOG0289|consen 443 SGTYLGIAGSDLQVYICKKKTK 464 (506)
T ss_pred CCCeEEeecceeEEEEEecccc
Confidence 3567777777777777775443
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-07 Score=94.71 Aligned_cols=230 Identities=14% Similarity=0.061 Sum_probs=148.3
Q ss_pred eEecCCCEEEEEeeCCEEEEEECCCCcE--EEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCC
Q 002615 594 AVLADFSQVVVGCYKGKIYFLDYLTGDI--YWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG 671 (900)
Q Consensus 594 ~~~~~~~~i~vg~~dg~l~~~d~~tG~~--~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~ 671 (900)
.+..+.+.+..|..|..|..|+...++. .-+...........-++.++..++..++|+.+..||...++...++..+.
T Consensus 182 ~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHt 261 (459)
T KOG0288|consen 182 EFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHT 261 (459)
T ss_pred EEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccc
Confidence 3444446788888888888888554441 11111112223444566667788889999999999999888777666554
Q ss_pred ccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEe
Q 002615 672 SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIW 750 (900)
Q Consensus 672 ~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w 750 (900)
.-..+.-+......++.|+.+..+..||+.. +...-++-.... ...+......++.|-.|+.|..|| .++....
T Consensus 262 dkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k--~~C~kt~l~~S~---cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~ 336 (459)
T KOG0288|consen 262 DKVTAAKFKLSHSRVVSGSADRTIKLWDLQK--AYCSKTVLPGSQ---CNDIVCSISDVISGHFDKKVRFWDIRSADKTR 336 (459)
T ss_pred cceeeehhhccccceeeccccchhhhhhhhh--hheecccccccc---ccceEecceeeeecccccceEEEeccCCceee
Confidence 4333333332234478888888888888775 333222211111 111222233556666789999999 8888888
Q ss_pred eecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEEecCC-----ceecccccccccccccccccCCCeEE
Q 002615 751 RCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGD-----PITASAYIDEHLQLKLESCLSIDRLV 825 (900)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l 825 (900)
..+.++.+.+... ......|...+.|..+..+|..+-++.-.+...+ +.....| .+.+.++
T Consensus 337 sv~~gg~vtSl~l--s~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvf------------Spd~~Yv 402 (459)
T KOG0288|consen 337 SVPLGGRVTSLDL--SMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVF------------SPDGSYV 402 (459)
T ss_pred EeecCcceeeEee--ccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEE------------CCCCcee
Confidence 8887776655442 2234468888999999999998887776654433 2211111 2348899
Q ss_pred EEEcCCCcEEEEEeecC
Q 002615 826 CICTSSGSIHILRVNLD 842 (900)
Q Consensus 826 ~~g~~~G~v~~~d~~~~ 842 (900)
.+|+.||.||+|+..++
T Consensus 403 aAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 403 AAGSADGSVYIWSVFTG 419 (459)
T ss_pred eeccCCCcEEEEEccCc
Confidence 99999999999999987
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.9e-06 Score=88.23 Aligned_cols=283 Identities=14% Similarity=0.112 Sum_probs=155.7
Q ss_pred EecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEE-EEe----cCCceeeeeeEeCCCCEEEEecCCCeEEEEE
Q 002615 583 IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYW-TFQ----TCGEVKCQPVVDAPRQLIWCGSHDHNLYALD 657 (900)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w-~~~----~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d 657 (900)
+..+..+.++..+.+.|..++.|++|..+.+||...-.... .|. ......-+..+...++.|++.+.......||
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~D 242 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLD 242 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEc
Confidence 45566677778888999999999999999999965322111 111 1222333444555677788877777788888
Q ss_pred CCCCeEEEeeccC-----------Cc--cccCceeec-cCCEEEEEeCCCcEEEEEcCCCCceeeeEeecC--C---cce
Q 002615 658 FRNYRCVYKLPCG-----------GS--IFGSPAIDE-VHDVLYVASTSGRLTAISVKALPFHTLWLHELE--V---PAF 718 (900)
Q Consensus 658 ~~~g~~~w~~~~~-----------~~--~~~~~~~~~-~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~--~---~~~ 718 (900)
. +|..+-.+.-+ |. ...+-+..+ +.+.++.++.+|.+..||.++. .+++.-++.. . -..
T Consensus 243 R-dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~-k~q~qVik~k~~~g~Rv~~ 320 (641)
T KOG0772|consen 243 R-DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNT-KSQLQVIKTKPAGGKRVPV 320 (641)
T ss_pred c-CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCc-hhheeEEeeccCCCcccCc
Confidence 4 44433222111 11 111222222 2356777889999999998862 2222222211 1 112
Q ss_pred eeeeeeeCCCEEEEEeecCcEEEEC-CCC--CEEeeecCC-CceeccccccccCC-CeEEEEeeCCeEEEEeCCCCce-e
Q 002615 719 ASLCITSANRHVICCLVDGHVVALD-SSG--SIIWRCRTG-GPIFAGPCTSFALP-SQVLICSRNGSIYSFEQESGNL-L 792 (900)
Q Consensus 719 ~s~~~~~~~~~i~~~~~~g~v~~~d-~~G--~~~w~~~~~-~~~~~~~~~~~~~~-~~l~~g~~dg~l~~~d~~tG~~-~ 792 (900)
.++.+..++..|..|+.||.|..|+ .+- .....+... .+-....|+.+..+ +.|..-+.|+.+..||...-+. +
T Consensus 321 tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL 400 (641)
T KOG0772|consen 321 TSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPL 400 (641)
T ss_pred eeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccch
Confidence 4555666777888888999999998 321 222222211 11111222333334 4555667899999999875432 2
Q ss_pred e-EEecCCceecccccccccccccccccCCCeEEEEEc------CCCcEEEEEeecCcccccccccccceeeeeeeccCC
Q 002615 793 W-EYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICT------SSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQG 865 (900)
Q Consensus 793 w-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~------~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~ 865 (900)
. ...+......+-+. ..+.+.+|+.|+ ..|.|++||..+- +.+......+
T Consensus 401 ~~~tgL~t~~~~tdc~----------FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~-------------d~v~ki~i~~ 457 (641)
T KOG0772|consen 401 NVRTGLPTPFPGTDCC----------FSPDDKLILTGTSAPNGMTAGTLFFFDRMTL-------------DTVYKIDIST 457 (641)
T ss_pred hhhcCCCccCCCCccc----------cCCCceEEEecccccCCCCCceEEEEeccce-------------eeEEEecCCC
Confidence 1 11222221111111 122366777765 3577999988642 3333333332
Q ss_pred ccccCceee--CCEEEEeeeCCeEEEE
Q 002615 866 DIFSSPVMI--GGRVFVGCRDDYIYCI 890 (900)
Q Consensus 866 ~~~ss~~~~--~~~l~vg~~dg~l~~l 890 (900)
..+.....+ =+.|++||.||++|+|
T Consensus 458 aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 458 ASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred ceEEEEeecchhhheeeecCCCceEEE
Confidence 211111111 2789999999999987
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.1e-06 Score=86.44 Aligned_cols=275 Identities=12% Similarity=0.077 Sum_probs=165.7
Q ss_pred eeCCceEEEEecCCCeEEEEECCCCcEEEE-----EecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEec
Q 002615 553 LKDSDIYLFVGSHSHKFICADAKRSSVLWE-----IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT 627 (900)
Q Consensus 553 ~~~~~~~v~igs~~g~l~~~d~~tG~~~w~-----~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~ 627 (900)
+...+-+++.|+.|-.|.+||...-.-... .+.......+..++..++.|++.+.......|| .+|..+-.+..
T Consensus 175 ~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~D-RdG~~~~e~~K 253 (641)
T KOG0772|consen 175 VDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLD-RDGFEIVEFSK 253 (641)
T ss_pred ecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEc-cCCceeeeeec
Confidence 344577999999999999999763221111 112223344667778888888888777788888 77876655443
Q ss_pred CCce-------------eeeeeEeC-CCCEEEEecCCCeEEEEECCCCe---EEEeeccC-C-c-cccCceeeccCCEEE
Q 002615 628 CGEV-------------KCQPVVDA-PRQLIWCGSHDHNLYALDFRNYR---CVYKLPCG-G-S-IFGSPAIDEVHDVLY 687 (900)
Q Consensus 628 ~~~~-------------~~~~~~~~-~~~~i~~gs~dg~l~~~d~~~g~---~~w~~~~~-~-~-~~~~~~~~~~~~~l~ 687 (900)
++.. ..+..+.+ .++.++++++||++..||..+-+ .+.+.... + . ...++..+.++..|.
T Consensus 254 GDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iA 333 (641)
T KOG0772|consen 254 GDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIA 333 (641)
T ss_pred cchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhh
Confidence 3221 12223333 35667888999999999987643 22222222 2 1 234455666566677
Q ss_pred EEeCCCcEEEEEcCCCCceeeeEe-ecCCc--ceeeeeeeeCCCEEEEEeecCcEEEEC-CC-CCEEeeecC-CCceecc
Q 002615 688 VASTSGRLTAISVKALPFHTLWLH-ELEVP--AFASLCITSANRHVICCLVDGHVVALD-SS-GSIIWRCRT-GGPIFAG 761 (900)
Q Consensus 688 v~t~~g~l~~~~~~~~~g~~~w~~-~~~~~--~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~-G~~~w~~~~-~~~~~~~ 761 (900)
.|..+|.|..|+.....-.+...+ +.+.+ .+.+..++.+++++..-+.|+.+-+|| .+ .+.+..... ..+.-..
T Consensus 334 agc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~t 413 (641)
T KOG0772|consen 334 AGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGT 413 (641)
T ss_pred hcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCC
Confidence 788899999999643222222222 22222 456777777888888888899999998 43 333322211 1111122
Q ss_pred ccccccCCCeEEEEee------CCeEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEE
Q 002615 762 PCTSFALPSQVLICSR------NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIH 835 (900)
Q Consensus 762 ~~~~~~~~~~l~~g~~------dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~ 835 (900)
.|...-.+..|+.|+. .|.|+.||..+-..+.++.+...-+...... +.=+.|++|+.||.++
T Consensus 414 dc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Wh-----------pkLNQi~~gsgdG~~~ 482 (641)
T KOG0772|consen 414 DCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWH-----------PKLNQIFAGSGDGTAH 482 (641)
T ss_pred ccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeec-----------chhhheeeecCCCceE
Confidence 2332223445666642 4689999999888888776653322221122 2246789999999998
Q ss_pred EEEe
Q 002615 836 ILRV 839 (900)
Q Consensus 836 ~~d~ 839 (900)
+|--
T Consensus 483 vyYd 486 (641)
T KOG0772|consen 483 VYYD 486 (641)
T ss_pred EEEC
Confidence 8743
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.5e-06 Score=87.55 Aligned_cols=273 Identities=15% Similarity=0.079 Sum_probs=160.7
Q ss_pred eEEEEecCCCeEEEEECCCCcEE----EEEecCCceeeceeEec-CCCEEEEEeeCCEEEEEECCCCcEEEEEec--CCc
Q 002615 558 IYLFVGSHSHKFICADAKRSSVL----WEIKLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDIYWTFQT--CGE 630 (900)
Q Consensus 558 ~~v~igs~~g~l~~~d~~tG~~~----w~~~~~~~~~~~~~~~~-~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~--~~~ 630 (900)
..|.+|...|.|-.||..+.+.. ..+..+....++..+.+ +...||..+|||+|.+-|.+++...-.+.. ...
T Consensus 201 ~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~ 280 (498)
T KOG4328|consen 201 KLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNI 280 (498)
T ss_pred eEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccce
Confidence 67888999999999998522111 11222222233444444 345799999999999999887754222222 333
Q ss_pred eeeeeeEeCCCCEEEEecCCCeEEEEECCCCeE-EEeeccCCccccCceeeccC-CEEEEEeCCCcEEEEEcCCCCceee
Q 002615 631 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRC-VYKLPCGGSIFGSPAIDEVH-DVLYVASTSGRLTAISVKALPFHTL 708 (900)
Q Consensus 631 ~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~-~w~~~~~~~~~~~~~~~~~~-~~l~v~t~~g~l~~~~~~~~~g~~~ 708 (900)
..+..-+..+++.+++|.+-|.+..||..+++. .|....+..-+.+..+.+.. ..+..++.++....||+....++.-
T Consensus 281 ~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s 360 (498)
T KOG4328|consen 281 WFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS 360 (498)
T ss_pred eeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC
Confidence 334444455667788887778899999887544 67666655444444444322 4567778899999999876434431
Q ss_pred --eEeecCCcceeeeeeeeCCCEEEEEeecCcEEEECCC---------CCEEeeecCCCceeccccccccCCCeEEEEee
Q 002615 709 --WLHELEVPAFASLCITSANRHVICCLVDGHVVALDSS---------GSIIWRCRTGGPIFAGPCTSFALPSQVLICSR 777 (900)
Q Consensus 709 --w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d~~---------G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~ 777 (900)
-..-.+.....+..+++.++.+++.+.|..|.+||.+ +.+......+..+.-.-+...-..+.|++|.+
T Consensus 361 p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~ 440 (498)
T KOG4328|consen 361 PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRY 440 (498)
T ss_pred cceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEecc
Confidence 2222333444677788889998888899999999831 11111111111111000111113567888888
Q ss_pred CCeEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCe-EEEEEcCCCcEEEEEe
Q 002615 778 NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDR-LVCICTSSGSIHILRV 839 (900)
Q Consensus 778 dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~~G~v~~~d~ 839 (900)
-..|-+||.+.|+.+-++..+.. .+.+.+. .+.+-+. ++.-++..|.||+|--
T Consensus 441 ~r~IDv~~~~~~q~v~el~~P~~-~tI~~vn--------~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 441 PRPIDVFDGNGGQMVCELHDPES-STIPSVN--------EFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred CcceeEEcCCCCEEeeeccCccc-cccccce--------eecccccceeccCCccceEEEEec
Confidence 88899999888876655322221 1112111 1222244 5555566788888843
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.7e-06 Score=80.64 Aligned_cols=274 Identities=15% Similarity=0.098 Sum_probs=156.9
Q ss_pred cccccceEEeeCCceEEEEecC-------CCeEEEEECCCCcEE---EEEecCCceeeceeEec-CCCEEEEEeeCCEEE
Q 002615 544 CVDASPLVVLKDSDIYLFVGSH-------SHKFICADAKRSSVL---WEIKLEGRIECSAAVLA-DFSQVVVGCYKGKIY 612 (900)
Q Consensus 544 ~v~~sp~v~~~~~~~~v~igs~-------~g~l~~~d~~tG~~~---w~~~~~~~~~~~~~~~~-~~~~i~vg~~dg~l~ 612 (900)
.+..||.+ .+++.+++. .|+|+.++...++-+ -.+...+... .++.+. ..+.+++.+.||.|.
T Consensus 13 svqfSPf~-----~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~Lf-dV~Wse~~e~~~~~a~GDGSLr 86 (311)
T KOG0277|consen 13 SVQFSPFV-----ENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLF-DVAWSENHENQVIAASGDGSLR 86 (311)
T ss_pred eeEecccc-----cchhheeehhhcccccCceEEEEecCCCCCeEEEEeeeccccee-EeeecCCCcceEEEEecCceEE
Confidence 35556765 444444432 367888887543322 2344444432 233333 345788889999999
Q ss_pred EEECCC-CcEEEEEecC-CceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeec-cCCEEEEE
Q 002615 613 FLDYLT-GDIYWTFQTC-GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDE-VHDVLYVA 689 (900)
Q Consensus 613 ~~d~~t-G~~~w~~~~~-~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~-~~~~l~v~ 689 (900)
.||..- -.++-.++-+ .++.+.---...+..++++|+|++|..|++.-++-+.++..+...+......+ ..+.+..+
T Consensus 87 l~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~ 166 (311)
T KOG0277|consen 87 LFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASA 166 (311)
T ss_pred EeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEc
Confidence 999322 1223233322 23333211111345677889999999999998888877766554333333322 23556667
Q ss_pred eCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeee-CCCEEEEEeecCcEEEEC-CC-CCEEeeecCCCc----eeccc
Q 002615 690 STSGRLTAISVKALPFHTLWLHELEVPAFASLCITS-ANRHVICCLVDGHVVALD-SS-GSIIWRCRTGGP----IFAGP 762 (900)
Q Consensus 690 t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~-~~~~i~~~~~~g~v~~~d-~~-G~~~w~~~~~~~----~~~~~ 762 (900)
+.+|.+..||.+. .|+.+- +..+.....+..... +...++.|+.|+.|+++| .+ ..++..+...+- +..+|
T Consensus 167 Sgd~~l~lwdvr~-~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sp 244 (311)
T KOG0277|consen 167 SGDGTLRLWDVRS-PGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSP 244 (311)
T ss_pred cCCceEEEEEecC-CCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCc
Confidence 7899999999885 366554 444432222222322 345677888999999999 43 234444422211 12222
Q ss_pred cccccCCCeEEEEeeCCeEEEEeCCCCc-eeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEe
Q 002615 763 CTSFALPSQVLICSRNGSIYSFEQESGN-LLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 839 (900)
Q Consensus 763 ~~~~~~~~~l~~g~~dg~l~~~d~~tG~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~ 839 (900)
.....|..+++|=++..||.+.+. .+-+++.+...+...-.. ....+.++.++-|+.+++|++
T Consensus 245 ----h~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws----------~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 245 ----HHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWS----------LFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ----chhhHhhhccccceEEecccccchhhhhhhhccceEEeccccc----------cccCceeeecccccceeeecc
Confidence 112346677889999999987543 233334333332221110 113788999999999999975
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.1e-06 Score=91.08 Aligned_cols=228 Identities=11% Similarity=0.046 Sum_probs=155.5
Q ss_pred eeCCceEEEEecCCCeEEEEECCCCcEEEE-Ee-cCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcE---EEEEec
Q 002615 553 LKDSDIYLFVGSHSHKFICADAKRSSVLWE-IK-LEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDI---YWTFQT 627 (900)
Q Consensus 553 ~~~~~~~v~igs~~g~l~~~d~~tG~~~w~-~~-~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~---~w~~~~ 627 (900)
...++.+|++.+.+|.|..|+..+-...-+ .. .+..+ ..+....+.+.+|+.++++.+|...+|+. +-+|..
T Consensus 21 ~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v---~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftl 97 (933)
T KOG1274|consen 21 YDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELV---SSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTL 97 (933)
T ss_pred EcCCCCEEEEecCCCceEEeecCCcccCCchhhccCcee---EEEeecccceEEeeccceEEEeeCCCCCccceeeeeec
Confidence 444566888888899999998765532222 11 12222 23334445789999999999998877753 455554
Q ss_pred CCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCcee
Q 002615 628 CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHT 707 (900)
Q Consensus 628 ~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~ 707 (900)
+-. ..++..++..+..|+.|-.|.+++..+......+...........+++++..|.+.+.+|.|++|++.+ +..
T Consensus 98 p~r---~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~--~~~ 172 (933)
T KOG1274|consen 98 PIR---DLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD--GIL 172 (933)
T ss_pred cce---EEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc--chh
Confidence 322 234566678899999999999999988877666666555566667777778889999999999999998 654
Q ss_pred eeEeecC--------CcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCCceecccccccc-CCCeEEEEee
Q 002615 708 LWLHELE--------VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFA-LPSQVLICSR 777 (900)
Q Consensus 708 ~w~~~~~--------~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~~~~~~~~~~~-~~~~l~~g~~ 777 (900)
......- ......++..++++.+.+...++.|..|+ .+++..+.+..........++... .+..|..++.
T Consensus 173 ~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~ 252 (933)
T KOG1274|consen 173 SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTL 252 (933)
T ss_pred hhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeecc
Confidence 4333211 22234556778889998888999999999 777776666543221111111111 2456888889
Q ss_pred CCeEEEEeCCC
Q 002615 778 NGSIYSFEQES 788 (900)
Q Consensus 778 dg~l~~~d~~t 788 (900)
+|.|.+||.++
T Consensus 253 ~g~I~vWnv~t 263 (933)
T KOG1274|consen 253 DGQILVWNVDT 263 (933)
T ss_pred CCcEEEEeccc
Confidence 99999999885
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=8e-05 Score=80.30 Aligned_cols=265 Identities=11% Similarity=0.098 Sum_probs=145.3
Q ss_pred EEEEe-cCCCeEEEEECCC-Cc--EEEEEecCCceeeceeEecCCCEEEEEee-CCEEEEEECC-CCcEE--EEEecCCc
Q 002615 559 YLFVG-SHSHKFICADAKR-SS--VLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYL-TGDIY--WTFQTCGE 630 (900)
Q Consensus 559 ~v~ig-s~~g~l~~~d~~t-G~--~~w~~~~~~~~~~~~~~~~~~~~i~vg~~-dg~l~~~d~~-tG~~~--w~~~~~~~ 630 (900)
++|++ ..++.|+.||..+ |+ ++-.....+. .....++++++.+|+++. ++.|+.|+.. +|++. -.....+
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~-~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~- 80 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQ-VQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPG- 80 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeEEecCCC-CccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCC-
Confidence 57777 4578899999864 54 3333333222 235677888889999865 6778878765 56542 1222222
Q ss_pred eeeeeeEeCCCCEEEEecC-CCeEEEEECCC-Ce---EEEeeccCCccccCceeeccCCEEEEEeC-CCcEEEEEcCCCC
Q 002615 631 VKCQPVVDAPRQLIWCGSH-DHNLYALDFRN-YR---CVYKLPCGGSIFGSPAIDEVHDVLYVAST-SGRLTAISVKALP 704 (900)
Q Consensus 631 ~~~~~~~~~~~~~i~~gs~-dg~l~~~d~~~-g~---~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~ 704 (900)
..+...++++++.+|++++ ++.+..|+.++ |. .+......... ....++++++.+|++.. ++.|..||+++ .
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~-~~~~~~p~g~~l~v~~~~~~~v~v~d~~~-~ 158 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGC-HSANIDPDNRTLWVPCLKEDRIRLFTLSD-D 158 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcc-cEeEeCCCCCEEEEeeCCCCEEEEEEECC-C
Confidence 2234556677788888764 67888898753 32 22211111111 12345665678888775 48899999875 2
Q ss_pred ceee------eEeecCCcceeeeeeeeCCCEEEEEee-cCcEEEEC-C--CCCEEe--eecCC-----Cceecccccccc
Q 002615 705 FHTL------WLHELEVPAFASLCITSANRHVICCLV-DGHVVALD-S--SGSIIW--RCRTG-----GPIFAGPCTSFA 767 (900)
Q Consensus 705 g~~~------w~~~~~~~~~~s~~~~~~~~~i~~~~~-~g~v~~~d-~--~G~~~w--~~~~~-----~~~~~~~~~~~~ 767 (900)
|... .....+.. .....+.+++.++|+.+. ++.+.+|+ . +|+... .+... ++..........
T Consensus 159 g~l~~~~~~~~~~~~g~~-p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p 237 (330)
T PRK11028 159 GHLVAQEPAEVTTVEGAG-PRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP 237 (330)
T ss_pred CcccccCCCceecCCCCC-CceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence 3221 11111111 123456677888988876 78898888 4 454322 12110 010000011112
Q ss_pred CCCeEEEEee-CCeEEEEeCCC--Cceee--EEecCCceecccccccccccccccccCCCeEEEEEcC-CCcEEEEEee
Q 002615 768 LPSQVLICSR-NGSIYSFEQES--GNLLW--EYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTS-SGSIHILRVN 840 (900)
Q Consensus 768 ~~~~l~~g~~-dg~l~~~d~~t--G~~~w--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~G~v~~~d~~ 840 (900)
.+..+|++.. ++.|..|+.++ +.+.. ....+..... -....++.++|++.. ++.|.+|+.+
T Consensus 238 dg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~------------~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 238 DGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRG------------FNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCc------------eEECCCCCEEEEEEccCCcEEEEEEc
Confidence 3456888754 57788887643 22222 2222111100 112234788888775 8889999764
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.8e-05 Score=76.45 Aligned_cols=224 Identities=14% Similarity=0.156 Sum_probs=132.6
Q ss_pred CceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeC--CEEEEEECCCCcEEEEEecCCceee
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK--GKIYFLDYLTGDIYWTFQTCGEVKC 633 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~d--g~l~~~d~~tG~~~w~~~~~~~~~~ 633 (900)
+...|-+|+.+| ...|....-........++....-..++.. .+.+-+.+ ..+..++.+.+..+-.+..+..+.+
T Consensus 16 d~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~ 92 (391)
T KOG2110|consen 16 DSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILA 92 (391)
T ss_pred ceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceEEEEecCCceEE
Confidence 345677788877 444543322211112222221122233322 33333222 2477778777777776666666554
Q ss_pred eeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccC-CccccCceeeccCCEEEEE----eCCCcEEEEEcCCCCceee
Q 002615 634 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG-GSIFGSPAIDEVHDVLYVA----STSGRLTAISVKALPFHTL 708 (900)
Q Consensus 634 ~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~-~~~~~~~~~~~~~~~l~v~----t~~g~l~~~~~~~~~g~~~ 708 (900)
.-. +.+.+++.-.+ .+|.||+++.+.+..+..- .......++..+.+.-|++ +..|.++.||..+ -+..
T Consensus 93 Vrm---Nr~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n--l~~v 166 (391)
T KOG2110|consen 93 VRM---NRKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN--LQPV 166 (391)
T ss_pred EEE---ccceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc--ceee
Confidence 322 34555555443 4999999999998876553 2233333333333322222 3578899999887 6777
Q ss_pred eEeecCCcceeeeeeeeCCCEEEEEeecCcEE-EEC-CCCCEEeeecCCCceeccccccccCCC-eEEEEeeCCeEEEEe
Q 002615 709 WLHELEVPAFASLCITSANRHVICCLVDGHVV-ALD-SSGSIIWRCRTGGPIFAGPCTSFALPS-QVLICSRNGSIYSFE 785 (900)
Q Consensus 709 w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~-~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~l~~~d 785 (900)
-....+.......++..++..+..++..|+|. +|. .+|+.++++..+........+.+..+. .|-+.+..++|++|.
T Consensus 167 ~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 167 NTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFK 246 (391)
T ss_pred eEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence 77778877778888888888999999888875 456 899999998866532222222233344 444556677888887
Q ss_pred CCC
Q 002615 786 QES 788 (900)
Q Consensus 786 ~~t 788 (900)
.++
T Consensus 247 L~~ 249 (391)
T KOG2110|consen 247 LEK 249 (391)
T ss_pred ecc
Confidence 654
|
|
| >PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups [] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1e-07 Score=74.96 Aligned_cols=59 Identities=25% Similarity=0.398 Sum_probs=51.5
Q ss_pred HHHHHHHhcccCC--cccccCCCccccCcchHHHHHHHHHh------CCCchhhhcCCCHHHHHHHH
Q 002615 363 QVIRKAFGHALMV--EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIAL 421 (900)
Q Consensus 363 ~~~~~~~~~~l~~--~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~~t~~~l~~~l 421 (900)
+.++++|+++++. .+++.+++||++|+|||.+++++..+ .+++..++++||+..|+++|
T Consensus 1 e~l~~~~~~~l~~~~~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~i~~~~~~~~~ti~~l~~~i 67 (67)
T PF00550_consen 1 EQLREIIAEVLGVDPEEIDPDTDFFDLGLDSLDAIELVSELEEEFGIKIPPSDLFEHPTIRDLAEYI 67 (67)
T ss_dssp HHHHHHHHHHHTSSGGCTSTTSBTTTTTSSHHHHHHHHHHHHHHHTSSTTHHHHCTSSSHHHHHHHH
T ss_pred CHHHHHHHHHHCcCHhhCCCCCCHHHhCCchHHHHHHHHHHHHHHcCCCCHHHHHcCCCHHHHHhHC
Confidence 4678889999986 57999999999999999999998654 47888999999999999875
|
The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A .... |
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=6e-06 Score=92.10 Aligned_cols=234 Identities=11% Similarity=0.067 Sum_probs=154.7
Q ss_pred eeceeEecCCCEEEEEeeCCEEEEEECCCCc-EEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCe---EEE
Q 002615 590 ECSAAVLADFSQVVVGCYKGKIYFLDYLTGD-IYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR---CVY 665 (900)
Q Consensus 590 ~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~-~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~---~~w 665 (900)
.+..++.++|.+|++.+.||.+..|+..+-. .--.....+....+... ..+.+.+|+.++.+.+|...+++ .+-
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL~ 93 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTILA 93 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCCccceee
Confidence 4577889999999999999999999854431 11112212222222222 34678899999999888776653 333
Q ss_pred eeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-C
Q 002615 666 KLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-S 744 (900)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~ 744 (900)
++.+. ....++..++..+.+|+.+-.|.+++..+ +........+........+.+.+..+.+.+.+|.|++|+ .
T Consensus 94 Rftlp---~r~~~v~g~g~~iaagsdD~~vK~~~~~D--~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 94 RFTLP---IRDLAVSGSGKMIAAGSDDTAVKLLNLDD--SSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred eeecc---ceEEEEecCCcEEEeecCceeEEEEeccc--cchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence 44332 22345666567888899998899999887 555554444444445666777788888899999999999 8
Q ss_pred CCCEEeeecC----CCceeccccc---cccCCCeEEEEeeCCeEEEEeCCCCceeeEEecCCc--eeccccccccccccc
Q 002615 745 SGSIIWRCRT----GGPIFAGPCT---SFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDP--ITASAYIDEHLQLKL 815 (900)
Q Consensus 745 ~G~~~w~~~~----~~~~~~~~~~---~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~--~~~~~~~~~~~~~~~ 815 (900)
+|.+....+. .+.+.+..|. ..-.++.+.+...++.|..|+.++.+....+..... .++...
T Consensus 169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~--------- 239 (933)
T KOG1274|consen 169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQ--------- 239 (933)
T ss_pred cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEE---------
Confidence 8877644331 1112122221 122457888888899999999998888776643321 111111
Q ss_pred ccccCCCeEEEEEcCCCcEEEEEeec
Q 002615 816 ESCLSIDRLVCICTSSGSIHILRVNL 841 (900)
Q Consensus 816 ~~~~~~~~~l~~g~~~G~v~~~d~~~ 841 (900)
..+.|.+|++++.+|.|.+||.++
T Consensus 240 --wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 240 --WSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred --EcCCCcEEeeeccCCcEEEEeccc
Confidence 233489999999999999999985
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.8e-05 Score=74.70 Aligned_cols=190 Identities=15% Similarity=0.162 Sum_probs=116.1
Q ss_pred ceEEEEecCCCeEEEEECC------CCcEEEEEecCCce-------eeceeEecCCCEEEEEeeCCEEEEEECCCCcEEE
Q 002615 557 DIYLFVGSHSHKFICADAK------RSSVLWEIKLEGRI-------ECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYW 623 (900)
Q Consensus 557 ~~~v~igs~~g~l~~~d~~------tG~~~w~~~~~~~~-------~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w 623 (900)
+..+.++. +|.|+.|--. --+.+|+...+.+. ..+..+.+..+-|+....|+.+|++|.++|++.-
T Consensus 72 d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r 150 (325)
T KOG0649|consen 72 DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR 150 (325)
T ss_pred hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE
Confidence 45555554 5889888532 23567876544322 2244455454555555589999999999999999
Q ss_pred EEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCC------ccccC--ceeeccCCEEEEEeCCCcE
Q 002615 624 TFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG------SIFGS--PAIDEVHDVLYVASTSGRL 695 (900)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~------~~~~~--~~~~~~~~~l~v~t~~g~l 695 (900)
.+..+....-+.+.-...+.|+.|+.||++..||.++++++..+.... +-++. .++..+.+.+++|. .-.+
T Consensus 151 ~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~l 229 (325)
T KOG0649|consen 151 EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKL 229 (325)
T ss_pred EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCce
Confidence 888877666665554557889999999999999999999887654321 11111 33444345555554 3457
Q ss_pred EEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEECCCCCEEeeec
Q 002615 696 TAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCR 753 (900)
Q Consensus 696 ~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d~~G~~~w~~~ 753 (900)
..|++.. .+..-.+..+.+.. .+...++.+++++....+..|.-+|.+.-..+
T Consensus 230 slwhLrs--se~t~vfpipa~v~---~v~F~~d~vl~~G~g~~v~~~~l~Gvl~a~ip 282 (325)
T KOG0649|consen 230 SLWHLRS--SESTCVFPIPARVH---LVDFVDDCVLIGGEGNHVQSYTLNGVLQANIP 282 (325)
T ss_pred eEEeccC--CCceEEEeccccee---EeeeecceEEEeccccceeeeeeccEEEEecc
Confidence 7777776 33333333332221 12234567777765555655554565544333
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-05 Score=76.05 Aligned_cols=167 Identities=14% Similarity=0.154 Sum_probs=110.6
Q ss_pred ccccccccccccccccccceEE-----eeCCceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEE
Q 002615 531 GFIQELWKVHMESCVDASPLVV-----LKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVG 605 (900)
Q Consensus 531 ~~~~~~W~~~~~~~v~~sp~v~-----~~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg 605 (900)
..++.+|+......+++.++-- .....+.|+.+..|+.+|++|+.+|++...++.+.....+.+.-...+.|+.|
T Consensus 95 ~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG 174 (325)
T KOG0649|consen 95 LATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSG 174 (325)
T ss_pred ccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeec
Confidence 3566788888777776654321 22245555555589999999999999999999887655454443455689999
Q ss_pred eeCCEEEEEECCCCcEEEEEecCC--------ceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCc
Q 002615 606 CYKGKIYFLDYLTGDIYWTFQTCG--------EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSP 677 (900)
Q Consensus 606 ~~dg~l~~~d~~tG~~~w~~~~~~--------~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~ 677 (900)
+.||++..||.+|++....+..-. ..+...+++.+..-+++|. ...+..|++...++...+.....+.-..
T Consensus 175 ~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~ 253 (325)
T KOG0649|consen 175 AEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVD 253 (325)
T ss_pred CCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCceEEEecccceeEee
Confidence 999999999999998876543311 1111123344456677765 4468888888888777776655543322
Q ss_pred eeeccCCEEEEEeCCCcEEEEEcC
Q 002615 678 AIDEVHDVLYVASTSGRLTAISVK 701 (900)
Q Consensus 678 ~~~~~~~~l~v~t~~g~l~~~~~~ 701 (900)
.. ++.++++.....+..|.++
T Consensus 254 F~---~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 254 FV---DDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred ee---cceEEEeccccceeeeeec
Confidence 22 2566666655566666544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.2e-06 Score=88.77 Aligned_cols=280 Identities=13% Similarity=0.128 Sum_probs=158.1
Q ss_pred EEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECC
Q 002615 580 LWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFR 659 (900)
Q Consensus 580 ~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~ 659 (900)
.|+......+ ...++.+||..+++.. +..++.||+.+|.++.+.+.+...+.+.+++.++.....|+.|..+..|+.+
T Consensus 6 ~~r~~~~hci-~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k 83 (1081)
T KOG1538|consen 6 TWRDKAEHCI-NDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK 83 (1081)
T ss_pred hhhcccccch-heeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc
Confidence 4554443333 2568889998888775 5579999999999998888777666666777677777788999999999866
Q ss_pred CCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcE
Q 002615 660 NYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHV 739 (900)
Q Consensus 660 ~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v 739 (900)
--..+ ++..+ ..+.++.+.+-...+..++.+. .-.|+++. +.+-+++.... ..+.....++.++.+|-.+|+|
T Consensus 84 lEG~L-kYSH~-D~IQCMsFNP~~h~LasCsLsd-FglWS~~q---K~V~K~kss~R-~~~CsWtnDGqylalG~~nGTI 156 (1081)
T KOG1538|consen 84 LEGIL-KYSHN-DAIQCMSFNPITHQLASCSLSD-FGLWSPEQ---KSVSKHKSSSR-IICCSWTNDGQYLALGMFNGTI 156 (1081)
T ss_pred cccee-eeccC-CeeeEeecCchHHHhhhcchhh-ccccChhh---hhHHhhhhhee-EEEeeecCCCcEEEEeccCceE
Confidence 42222 22222 2222223333233444443322 23343332 11111111111 1334455567778888889998
Q ss_pred EEECCCCCEEeeecC----CCceecccccc---ccCCCeEEEEeeCCeEEEEeCCCCceeeEE-ecCCceeccccccccc
Q 002615 740 VALDSSGSIIWRCRT----GGPIFAGPCTS---FALPSQVLICSRNGSIYSFEQESGNLLWEY-SVGDPITASAYIDEHL 811 (900)
Q Consensus 740 ~~~d~~G~~~w~~~~----~~~~~~~~~~~---~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~ 811 (900)
..-+.+|+..-.+.. +.++++..+.+ ...++.+-+...+.++..+.. +|+.+-+- .++-......++
T Consensus 157 siRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf---- 231 (1081)
T KOG1538|consen 157 SIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYF---- 231 (1081)
T ss_pred EeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheec----
Confidence 888877776544443 23455443322 223455666666777766664 46665421 122122111122
Q ss_pred ccccccccCCCeEEEEEcCCCcEEEEEeecCcccccccccccceeeeeeeccCCccccCcee--eCCEEEEeeeCCeEEE
Q 002615 812 QLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYC 889 (900)
Q Consensus 812 ~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~--~~~~l~vg~~dg~l~~ 889 (900)
..+.++.+|+.+|.+.+|-.+.= .+-+.-+...=+++ ..+ .+..+.+||.||++-|
T Consensus 232 --------~NGEy~LiGGsdk~L~~fTR~Gv-------------rLGTvg~~D~WIWt-V~~~PNsQ~v~~GCqDGTiAC 289 (1081)
T KOG1538|consen 232 --------TNGEYILLGGSDKQLSLFTRDGV-------------RLGTVGEQDSWIWT-VQAKPNSQYVVVGCQDGTIAC 289 (1081)
T ss_pred --------cCCcEEEEccCCCceEEEeecCe-------------EEeeccccceeEEE-EEEccCCceEEEEEccCeeeh
Confidence 23889999999999999865421 11000010000111 111 3457889999999999
Q ss_pred EEcccc
Q 002615 890 IALETQ 895 (900)
Q Consensus 890 ld~~tg 895 (900)
|++...
T Consensus 290 yNl~fS 295 (1081)
T KOG1538|consen 290 YNLIFS 295 (1081)
T ss_pred hhhHHh
Confidence 997543
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00022 Score=68.78 Aligned_cols=266 Identities=12% Similarity=0.125 Sum_probs=154.9
Q ss_pred CCEEEEEeeCCEEEEEECCCCcEEEEEec-----CCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeE--EEeeccCC
Q 002615 599 FSQVVVGCYKGKIYFLDYLTGDIYWTFQT-----CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRC--VYKLPCGG 671 (900)
Q Consensus 599 ~~~i~vg~~dg~l~~~d~~tG~~~w~~~~-----~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~--~w~~~~~~ 671 (900)
|..++.++.|..|..|+...+.. |.... +....-+.+..+.++++.++|.|.++..|...+++. +-.+..+.
T Consensus 27 g~ilAscg~Dk~vriw~~~~~~s-~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHE 105 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSSGDS-WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHE 105 (312)
T ss_pred ceEEEeecCCceEEEEecCCCCc-EEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccc
Confidence 33467777888999999664433 44331 223334456777788999999999999998776643 33333344
Q ss_pred ccccCceeeccCCEEEEEeCCCcEEEEEcCCC-CceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEE
Q 002615 672 SIFGSPAIDEVHDVLYVASTSGRLTAISVKAL-PFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSII 749 (900)
Q Consensus 672 ~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~-~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~ 749 (900)
+-.-+.+...+++.|..++.+..+..|..... ..+..--.+.+....-.....+..+.++.+++|..|..|. ..+. -
T Consensus 106 nEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd-d 184 (312)
T KOG0645|consen 106 NEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD-D 184 (312)
T ss_pred cceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCC-C
Confidence 44455566666788888999999998887631 1122222233333333344556678999999999999988 4222 2
Q ss_pred eee--cCCC---ceeccccccccC-CCeEEEEeeCCeEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCe
Q 002615 750 WRC--RTGG---PIFAGPCTSFAL-PSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDR 823 (900)
Q Consensus 750 w~~--~~~~---~~~~~~~~~~~~-~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (900)
|.. +..+ .+++.. +.. +..+..++.|+.+..|...++ |.......+|..+.. ++
T Consensus 185 W~c~~tl~g~~~TVW~~~---F~~~G~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~--------------~~ 244 (312)
T KOG0645|consen 185 WECVQTLDGHENTVWSLA---FDNIGSRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD--------------NG 244 (312)
T ss_pred eeEEEEecCccceEEEEE---ecCCCceEEEecCCcceEeeeeccC---cchhcccceEeeeec--------------cc
Confidence 332 1111 222222 333 347888888888887764322 111111233333322 57
Q ss_pred EEEEEcCCCcEEEEEeecCcccccccccccceeeee-eeccCCccccCcee---eCCEEEEeeeCCeEEEEEcc
Q 002615 824 LVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFA-KLELQGDIFSSPVM---IGGRVFVGCRDDYIYCIALE 893 (900)
Q Consensus 824 ~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~ss~~~---~~~~l~vg~~dg~l~~ld~~ 893 (900)
.|+.++.|+.|.+|....+..+-. ..++. ...-++.-+.+... ..++|..|+.||.+..|.+.
T Consensus 245 ~IaS~ggD~~i~lf~~s~~~d~p~-------~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 245 VIASGGGDDAIRLFKESDSPDEPS-------WNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ceEeccCCCEEEEEEecCCCCCch-------HHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 889999999999997764311000 01111 01112222222222 24789999999999998764
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00011 Score=75.38 Aligned_cols=214 Identities=15% Similarity=0.085 Sum_probs=122.6
Q ss_pred ceEEEE-ecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEec--C--Cce
Q 002615 557 DIYLFV-GSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT--C--GEV 631 (900)
Q Consensus 557 ~~~v~i-gs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~--~--~~~ 631 (900)
++.+|. -...+.|+.+|+.+++.. .+..+.. .+..+...++.+|++..++ +..+|..+|+..-.... . ...
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~~--~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~ 86 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPGP--NGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFN 86 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEE-EEESSSE--EEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEE-EEecCCC--ceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccC
Confidence 444554 446789999999988764 3444442 3556663447888887655 66669999977544443 1 222
Q ss_pred ee-eeeEeCCCCEEEEecCC---------CeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEE-eCCCcEEEEEc
Q 002615 632 KC-QPVVDAPRQLIWCGSHD---------HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVA-STSGRLTAISV 700 (900)
Q Consensus 632 ~~-~~~~~~~~~~i~~gs~d---------g~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~-t~~g~l~~~~~ 700 (900)
.. -.+++ .++.+|+++.. |.+|.++.. ++....... -......+++++++.||+. +..+.|+++++
T Consensus 87 ~~ND~~vd-~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~ 163 (246)
T PF08450_consen 87 RPNDVAVD-PDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-LGFPNGIAFSPDGKTLYVADSFNGRIWRFDL 163 (246)
T ss_dssp EEEEEEE--TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-ESSEEEEEEETTSSEEEEEETTTTEEEEEEE
T ss_pred CCceEEEc-CCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-cccccceEECCcchheeecccccceeEEEec
Confidence 22 23444 45779987532 569999988 665433221 1223345666667788865 56788999998
Q ss_pred CCCCceeeeE---eecCCcc-eeeeeeeeCCCEEEEEee-cCcEEEECCCCCEEeeecCCCceeccccccccCCCeEEEE
Q 002615 701 KALPFHTLWL---HELEVPA-FASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLIC 775 (900)
Q Consensus 701 ~~~~g~~~w~---~~~~~~~-~~s~~~~~~~~~i~~~~~-~g~v~~~d~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g 775 (900)
+...+...-. ....... .........++++|++.. .+.|.+++.+|+++-.+..+.+..+..++.-...+.||+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 164 DADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp ETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred cccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 7533311111 1222211 122223345778999865 6889999966998877766533222222212234567776
Q ss_pred ee
Q 002615 776 SR 777 (900)
Q Consensus 776 ~~ 777 (900)
+.
T Consensus 244 ta 245 (246)
T PF08450_consen 244 TA 245 (246)
T ss_dssp EB
T ss_pred eC
Confidence 53
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.7e-06 Score=84.69 Aligned_cols=258 Identities=12% Similarity=0.111 Sum_probs=150.4
Q ss_pred EEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceee
Q 002615 601 QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAID 680 (900)
Q Consensus 601 ~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~ 680 (900)
.++.|+.||.|..||+.+-+..|+++.+........++. +.+++.+.|.+|..|-... .++..+.+.+.+...-...
T Consensus 81 ~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~gIdh~~ 157 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILGKSVYLGIDHHR 157 (433)
T ss_pred hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeecccccccccccc
Confidence 368899999999999999999999998876665555554 4455556688888876442 3444443332222111111
Q ss_pred ccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCC-EEEEEeecCcEEEEC-CCCCEEeeecCC---
Q 002615 681 EVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANR-HVICCLVDGHVVALD-SSGSIIWRCRTG--- 755 (900)
Q Consensus 681 ~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~-~i~~~~~~g~v~~~d-~~G~~~w~~~~~--- 755 (900)
.+. .++|.+-.+-.||..- -.++-+...+.+.+.+....+... .+.+|..|+.|+.|| .++.++-.+...
T Consensus 158 --~~~-~FaTcGe~i~IWD~~R--~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRT 232 (433)
T KOG0268|consen 158 --KNS-VFATCGEQIDIWDEQR--DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRT 232 (433)
T ss_pred --ccc-cccccCceeeeccccc--CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccc
Confidence 122 2344455688888765 455555555555444444433333 445555899999999 888776554322
Q ss_pred CceeccccccccCCCeEEEEeeCCeEEEEeCCCCce-eeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcE
Q 002615 756 GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNL-LWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSI 834 (900)
Q Consensus 756 ~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v 834 (900)
..+...| ..-+..+++.|..+|.||...-+. +-.+.-+.......-+ .+-|..++.|+-|..|
T Consensus 233 N~IswnP-----eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdf-----------sptG~EfvsgsyDksI 296 (433)
T KOG0268|consen 233 NTICWNP-----EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDF-----------SPTGQEFVSGSYDKSI 296 (433)
T ss_pred cceecCc-----cccceeeccccccceehhhhhhcccchhhcccceeEEEecc-----------CCCcchhccccccceE
Confidence 1222222 223566778899999999754221 1111111111111111 1227889999999999
Q ss_pred EEEEeecCcccccccccccceeeeeeeccCCccccCc-eeeCCEEEEeeeCCeEEEEEcc
Q 002615 835 HILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSP-VMIGGRVFVGCRDDYIYCIALE 893 (900)
Q Consensus 835 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~-~~~~~~l~vg~~dg~l~~ld~~ 893 (900)
++|..+.+.+...-++. .. ..++.-. -.+..+++.|+.|+++..|...
T Consensus 297 RIf~~~~~~SRdiYhtk-RM----------q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 297 RIFPVNHGHSRDIYHTK-RM----------QHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred EEeecCCCcchhhhhHh-hh----------heeeEEEEeccccEEEecCCCcceeeeecc
Confidence 99999876443322211 01 0111100 0145688899999999999754
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.8e-05 Score=85.51 Aligned_cols=320 Identities=12% Similarity=0.088 Sum_probs=163.5
Q ss_pred CceEEEEecCCCeEEEEECCCCcEEEEEe----cCCc-----------e---------eeceeEecCCCEEEEEeeCCEE
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWEIK----LEGR-----------I---------ECSAAVLADFSQVVVGCYKGKI 611 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~~~w~~~----~~~~-----------~---------~~~~~~~~~~~~i~vg~~dg~l 611 (900)
...+|++|+.+|.|..|++.|-...-.++ ++.. . .....++...+.+.+--.|..|
T Consensus 269 s~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSl 348 (1080)
T KOG1408|consen 269 SSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSL 348 (1080)
T ss_pred ecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceE
Confidence 47789999999999999998754332221 1100 0 0122344344455544457889
Q ss_pred EEEECCCC----cE---------EEEEecCC-ceeeeeeEeCCCCEEEEecCCCeEEEEECCCC---eEEEeecc-----
Q 002615 612 YFLDYLTG----DI---------YWTFQTCG-EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY---RCVYKLPC----- 669 (900)
Q Consensus 612 ~~~d~~tG----~~---------~w~~~~~~-~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g---~~~w~~~~----- 669 (900)
|.||..+- +. +|..+.-. .+...+.-.-..+-+.+.+.|++|..||.+.+ ....+-.+
T Consensus 349 YvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ 428 (1080)
T KOG1408|consen 349 YVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLS 428 (1080)
T ss_pred EEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhh
Confidence 99998763 22 34433211 22222111112344677888999999998752 22111000
Q ss_pred ---------------C-------------C-ccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceee
Q 002615 670 ---------------G-------------G-SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFAS 720 (900)
Q Consensus 670 ---------------~-------------~-~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s 720 (900)
+ + .-+.+.++.+++..|..|...|.|..|++.. -+..-..+.+...+..
T Consensus 429 ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~--l~~~~~~eAHesEilc 506 (1080)
T KOG1408|consen 429 KIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE--LEYTCFMEAHESEILC 506 (1080)
T ss_pred cCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehh--hhhhhheecccceeEE
Confidence 0 0 1123456667677888888889999999876 3333333333322211
Q ss_pred eee---eeCCCEEEEEeecCcEEEEC-C-CCCEEeeecC-CCceeccccccccCCCeEEEEeeCCeEEEE-eCCCCceee
Q 002615 721 LCI---TSANRHVICCLVDGHVVALD-S-SGSIIWRCRT-GGPIFAGPCTSFALPSQVLICSRNGSIYSF-EQESGNLLW 793 (900)
Q Consensus 721 ~~~---~~~~~~i~~~~~~g~v~~~d-~-~G~~~w~~~~-~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~-d~~tG~~~w 793 (900)
... ......+..++.|.-|++|| . +=.++-++.. ...+.+......+.+-.++.+..|..++.- +.+.+.-.-
T Consensus 507 LeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~ 586 (1080)
T KOG1408|consen 507 LEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRL 586 (1080)
T ss_pred EeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCcee
Confidence 111 11234566677788889998 3 3222222221 112222221112222345555555543321 111111111
Q ss_pred EEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecCcccccccccccceeeeeeeccCCccccCce-
Q 002615 794 EYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPV- 872 (900)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~- 872 (900)
.........- .+++-....+.-+++.+++.|.+|++|+.++| +....++-....-.+++
T Consensus 587 f~r~t~t~~k-------tTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg-------------Kq~k~FKgs~~~eG~lIK 646 (1080)
T KOG1408|consen 587 FPRHTQTLSK-------TTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG-------------KQVKSFKGSRDHEGDLIK 646 (1080)
T ss_pred cccccccccc-------ceEEEeeeCCCcceEEEEecccceEEEecccc-------------ceeeeecccccCCCceEE
Confidence 1011111000 11111222334788999999999999999987 33333332211111221
Q ss_pred --e--eCCEEEEeeeCCeEEEEEcccccc
Q 002615 873 --M--IGGRVFVGCRDDYIYCIALETQHL 897 (900)
Q Consensus 873 --~--~~~~l~vg~~dg~l~~ld~~tg~~ 897 (900)
. .+.+|...|.|.+|-++|..+|+.
T Consensus 647 v~lDPSgiY~atScsdktl~~~Df~sgEc 675 (1080)
T KOG1408|consen 647 VILDPSGIYLATSCSDKTLCFVDFVSGEC 675 (1080)
T ss_pred EEECCCccEEEEeecCCceEEEEeccchh
Confidence 1 345666678899999999988873
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.6e-05 Score=84.41 Aligned_cols=309 Identities=13% Similarity=0.141 Sum_probs=175.2
Q ss_pred ceEEEEecCCCeEEEEECCCC-------------cEEEEEecCC-cee--eceeEecCCCEEEEEeeCCEEEEEECCCC-
Q 002615 557 DIYLFVGSHSHKFICADAKRS-------------SVLWEIKLEG-RIE--CSAAVLADFSQVVVGCYKGKIYFLDYLTG- 619 (900)
Q Consensus 557 ~~~v~igs~~g~l~~~d~~tG-------------~~~w~~~~~~-~~~--~~~~~~~~~~~i~vg~~dg~l~~~d~~tG- 619 (900)
...|-+.-.|+.||.||..+- ..+|..+.-. .++ .++++-. +.....+.||+|..||++.+
T Consensus 336 ~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~--~cF~TCSsD~TIRlW~l~~ct 413 (1080)
T KOG1408|consen 336 TDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPR--GCFTTCSSDGTIRLWDLAFCT 413 (1080)
T ss_pred CceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCc--cceeEecCCCcEEEeeccccc
Confidence 445555557888999998752 2445543211 221 2233322 23555667999999997653
Q ss_pred --cEEEEEec----------CC-----------------------c-eeeeeeEeCCCCEEEEecCCCeEEEEECCCCeE
Q 002615 620 --DIYWTFQT----------CG-----------------------E-VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRC 663 (900)
Q Consensus 620 --~~~w~~~~----------~~-----------------------~-~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~ 663 (900)
.+..+--. .+ . -.-+..+.+++..+..|..-|+|..|++..-+.
T Consensus 414 nn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~ 493 (1080)
T KOG1408|consen 414 NNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY 493 (1080)
T ss_pred ccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh
Confidence 33211000 00 0 012334566667777787788999999877655
Q ss_pred EEeeccCCcc-----ccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCC--CEEEEEeec
Q 002615 664 VYKLPCGGSI-----FGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSAN--RHVICCLVD 736 (900)
Q Consensus 664 ~w~~~~~~~~-----~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~--~~i~~~~~~ 736 (900)
.-....+..- ++.|.+.. ..|..++.+..|..||... ...++.+...+...+.+.-+...+ -.++.++.|
T Consensus 494 ~~~~eAHesEilcLeyS~p~~~~--kLLASasrdRlIHV~Dv~r-ny~l~qtld~HSssITsvKFa~~gln~~MiscGAD 570 (1080)
T KOG1408|consen 494 TCFMEAHESEILCLEYSFPVLTN--KLLASASRDRLIHVYDVKR-NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGAD 570 (1080)
T ss_pred hhheecccceeEEEeecCchhhh--HhhhhccCCceEEEEeccc-ccchhhhhcccccceeEEEEeecCCceEEEeccCc
Confidence 5444443321 33444432 4566677788888898763 234444444444444444444333 345555555
Q ss_pred CcEEEEC--C--CCCEEee--ecCCC-ceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEEecCCceeccccccc
Q 002615 737 GHVVALD--S--SGSIIWR--CRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDE 809 (900)
Q Consensus 737 g~v~~~d--~--~G~~~w~--~~~~~-~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 809 (900)
..++.-. + +|.+--+ ..... .++-..+ .-..+.+.+++.|..|..||.++|+..-.++-...--.+++-
T Consensus 571 ksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~V--dp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIK-- 646 (1080)
T KOG1408|consen 571 KSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAV--DPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIK-- 646 (1080)
T ss_pred hhhheehhccccCceeccccccccccceEEEeee--CCCcceEEEEecccceEEEeccccceeeeecccccCCCceEE--
Confidence 5443322 2 2322111 00111 1111110 112457888999999999999999998776643322111110
Q ss_pred ccccccccccCCCeEEEEEcCCCcEEEEEeecCcccccccccccceeeeeeeccCCccccCceeeC--CEEEEeeeCCeE
Q 002615 810 HLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIG--GRVFVGCRDDYI 887 (900)
Q Consensus 810 ~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~~~--~~l~vg~~dg~l 887 (900)
...-+++.+++..+.|.+|.++|.-+| +...+..-++++++...+.+ .+|+..+.||-|
T Consensus 647 ------v~lDPSgiY~atScsdktl~~~Df~sg-------------EcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCI 707 (1080)
T KOG1408|consen 647 ------VILDPSGIYLATSCSDKTLCFVDFVSG-------------ECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCI 707 (1080)
T ss_pred ------EEECCCccEEEEeecCCceEEEEeccc-------------hhhhhhcCcchheeeeeecccchhheeecCCceE
Confidence 112234788888889999999999887 55555556666666555533 578888889999
Q ss_pred EEEEcc
Q 002615 888 YCIALE 893 (900)
Q Consensus 888 ~~ld~~ 893 (900)
++|.+.
T Consensus 708 FvW~lp 713 (1080)
T KOG1408|consen 708 FVWKLP 713 (1080)
T ss_pred EEEECc
Confidence 999864
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.4e-05 Score=82.72 Aligned_cols=272 Identities=13% Similarity=0.126 Sum_probs=160.0
Q ss_pred eEEeeCCceEEE-EecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecC
Q 002615 550 LVVLKDSDIYLF-VGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC 628 (900)
Q Consensus 550 ~v~~~~~~~~v~-igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~ 628 (900)
.+-.+.++.+++ .|+.--.|.+||..+-.+..+..+...+..-.++++|-..+++-..|-.|-+ ...-|.- .....+
T Consensus 56 ~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~Ief-Hak~G~h-y~~RIP 133 (703)
T KOG2321|consen 56 RIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEF-HAKYGRH-YRTRIP 133 (703)
T ss_pred eeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeee-hhhcCee-eeeecC
Confidence 343444566655 4667778999999988877776666555444556666556666665655433 2233322 222222
Q ss_pred CceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceee
Q 002615 629 GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTL 708 (900)
Q Consensus 629 ~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~ 708 (900)
...... .+....--+|++.....||.+|++.|..+-.+.........+-+...++.|.+||.+|.+-.||+.+ -...
T Consensus 134 ~~GRDm-~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~--ksrv 210 (703)
T KOG2321|consen 134 KFGRDM-KYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD--KSRV 210 (703)
T ss_pred cCCccc-cccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh--hhhh
Confidence 111111 1111123366666667899999999999888777655455555556678899999999999999886 3333
Q ss_pred eEeecCCc-----------ceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCC--ceeccccccccCCCeEEE
Q 002615 709 WLHELEVP-----------AFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG--PIFAGPCTSFALPSQVLI 774 (900)
Q Consensus 709 w~~~~~~~-----------~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~--~~~~~~~~~~~~~~~l~~ 774 (900)
-..+.... ...+..+..++=.+-+|+.+|.++.|| .+.+++.....+. ++........ .++..++
T Consensus 211 ~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~-~~q~~v~ 289 (703)
T KOG2321|consen 211 GTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT-DQQNKVV 289 (703)
T ss_pred eeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc-CCCceEE
Confidence 33333221 123333443445688999999999999 7666654433222 3322222122 2234444
Q ss_pred EeeCCeEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEe
Q 002615 775 CSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 839 (900)
Q Consensus 775 g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~ 839 (900)
......+..||..+|+..-......++.- .+. .+..+.++++-.++.+..|-.
T Consensus 290 S~Dk~~~kiWd~~~Gk~~asiEpt~~lND-~C~-----------~p~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 290 SMDKRILKIWDECTGKPMASIEPTSDLND-FCF-----------VPGSGMFFTANESSKMHTYYI 342 (703)
T ss_pred ecchHHhhhcccccCCceeeccccCCcCc-eee-----------ecCCceEEEecCCCcceeEEc
Confidence 55556678899888887654443333211 111 223778888888887765533
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.2e-05 Score=76.14 Aligned_cols=270 Identities=16% Similarity=0.125 Sum_probs=159.2
Q ss_pred CceEEEEecCCCeEEEEECCCCcEE------EEEe------cC--Cc-eeeceeEec-CCCEEEEEeeCCEEEEEECCCC
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVL------WEIK------LE--GR-IECSAAVLA-DFSQVVVGCYKGKIYFLDYLTG 619 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~~~------w~~~------~~--~~-~~~~~~~~~-~~~~i~vg~~dg~l~~~d~~tG 619 (900)
.+.++..|..||.+..||+++-.-. -+.. .+ .+ -..++...+ |.+....++.|.+|.+||..|-
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl 134 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL 134 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc
Confidence 5788999999999999998764311 0000 00 11 122333333 4456667889999999999999
Q ss_pred cEEEEEecCCceeee---eeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCC-ccccCceeeccCCEEEEEeCCCcE
Q 002615 620 DIYWTFQTCGEVKCQ---PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG-SIFGSPAIDEVHDVLYVASTSGRL 695 (900)
Q Consensus 620 ~~~w~~~~~~~~~~~---~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~-~~~~~~~~~~~~~~l~v~t~~g~l 695 (900)
+..-.|+.++.+.+. |+.. ..-.|.+|+.+-.+...|+++|.+-.....+. .+.+.-.....+=.|+.|+.||.+
T Consensus 135 Q~a~~F~me~~VYshamSp~a~-sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~i 213 (397)
T KOG4283|consen 135 QEAVDFKMEGKVYSHAMSPMAM-SHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAI 213 (397)
T ss_pred eeeEEeecCceeehhhcChhhh-cceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceE
Confidence 888888888877643 2222 23567778888889999999999877765542 222211111112457888999999
Q ss_pred EEEEcCCCCceeee--EeecC-C----------cceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCCcee--
Q 002615 696 TAISVKALPFHTLW--LHELE-V----------PAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIF-- 759 (900)
Q Consensus 696 ~~~~~~~~~g~~~w--~~~~~-~----------~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~~~-- 759 (900)
..||+...+|...- ..+.. . ..+...+...++..++.++.+.++..++ .+|+-- ....+++.
T Consensus 214 rlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~nt--l~~~g~~~~n 291 (397)
T KOG4283|consen 214 RLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNT--LREFGPIIHN 291 (397)
T ss_pred EEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccc--cccccccccc
Confidence 99998875554322 11111 1 1123445555666777777788888888 666421 11111110
Q ss_pred --cccc--ccccCCCeEEEEeeCCeEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEE
Q 002615 760 --AGPC--TSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIH 835 (900)
Q Consensus 760 --~~~~--~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~ 835 (900)
..+. +.....+.+..--.++.++.++.-+|.++-..+.+...+...+...+ -...+.|..|+.++
T Consensus 292 ~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~-----------fq~~~tg~~d~ni~ 360 (397)
T KOG4283|consen 292 QTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPD-----------FEQCFTGDMNGNIY 360 (397)
T ss_pred ccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCc-----------hhhhhccccCCccc
Confidence 0010 11111223333345688999999999886544444332222222211 34567888899988
Q ss_pred EEEe
Q 002615 836 ILRV 839 (900)
Q Consensus 836 ~~d~ 839 (900)
.|-+
T Consensus 361 ~w~p 364 (397)
T KOG4283|consen 361 MWSP 364 (397)
T ss_pred cccc
Confidence 8855
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.5e-05 Score=78.62 Aligned_cols=240 Identities=13% Similarity=0.109 Sum_probs=145.6
Q ss_pred ceeEecCC--CEEEEEeeCCEEEEEECCCCcE----EEEEecCCceeeeeeEeC-CCCEEEEecCCCeEEEEECCCCeE-
Q 002615 592 SAAVLADF--SQVVVGCYKGKIYFLDYLTGDI----YWTFQTCGEVKCQPVVDA-PRQLIWCGSHDHNLYALDFRNYRC- 663 (900)
Q Consensus 592 ~~~~~~~~--~~i~vg~~dg~l~~~d~~tG~~----~w~~~~~~~~~~~~~~~~-~~~~i~~gs~dg~l~~~d~~~g~~- 663 (900)
+..+.+.. ..|.+|...|.|-.||..+.+. ...+..++..++...+.+ +...||..|+||++.+-|.+++..
T Consensus 191 ~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e 270 (498)
T KOG4328|consen 191 SLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISE 270 (498)
T ss_pred EEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhH
Confidence 44555433 4688899999999999842221 223334443344444443 346799999999999999887642
Q ss_pred -EEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCC-CEEEEEeecCcEEE
Q 002615 664 -VYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSAN-RHVICCLVDGHVVA 741 (900)
Q Consensus 664 -~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~-~~i~~~~~~g~v~~ 741 (900)
+...+.....+++.-+..+...+++++.-|.+..||.++ .|+.+|....+...+.+..+.+.. -.+..++.|+....
T Consensus 271 ~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~-~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kI 349 (498)
T KOG4328|consen 271 EVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRT-DGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKI 349 (498)
T ss_pred HHhhcCccceeeeeccccCCCccEEEeecccceEEEEeec-CCccchhhhhhhcccceeecCCCCchheeecccCcceee
Confidence 222222444555555555567788888778888999886 356677776666555555554443 35667788899989
Q ss_pred EC-C--CCCE---EeeecCCCceeccccccccCCCeEEEEeeCCeEEEEeCC----CCceeeEEecCC--ceeccccccc
Q 002615 742 LD-S--SGSI---IWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQE----SGNLLWEYSVGD--PITASAYIDE 809 (900)
Q Consensus 742 ~d-~--~G~~---~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~----tG~~~w~~~~~~--~~~~~~~~~~ 809 (900)
|| . .++. +..+.....+- +.+.+ -.+++|+..+.|..|.+||.. .-..+-.+.... .-..+++-.
T Consensus 350 WD~R~l~~K~sp~lst~~HrrsV~-sAyFS-Ps~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA- 426 (498)
T KOG4328|consen 350 WDLRQLRGKASPFLSTLPHRRSVN-SAYFS-PSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKA- 426 (498)
T ss_pred eehhhhcCCCCcceecccccceee-eeEEc-CCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhh-
Confidence 98 3 3332 33332222221 11111 135679999999999999963 112222222211 112222211
Q ss_pred ccccccccccCCCeEEEEEcCCCcEEEEEeecC
Q 002615 810 HLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 842 (900)
Q Consensus 810 ~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~ 842 (900)
...++..+|++|.....|-+||.+.+
T Consensus 427 -------~W~P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 427 -------AWDPDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred -------eeCCCccEEEEeccCcceeEEcCCCC
Confidence 12345889999998888999998866
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00039 Score=74.96 Aligned_cols=273 Identities=14% Similarity=0.137 Sum_probs=144.0
Q ss_pred EEEEE-eeCCEEEEEECCC-CcE--EEEEecCCceeeeeeEeCCCCEEEEecC-CCeEEEEECC-CCeEE--EeeccCCc
Q 002615 601 QVVVG-CYKGKIYFLDYLT-GDI--YWTFQTCGEVKCQPVVDAPRQLIWCGSH-DHNLYALDFR-NYRCV--YKLPCGGS 672 (900)
Q Consensus 601 ~i~vg-~~dg~l~~~d~~t-G~~--~w~~~~~~~~~~~~~~~~~~~~i~~gs~-dg~l~~~d~~-~g~~~--w~~~~~~~ 672 (900)
++|++ ..++.|+.||..+ |++ +-++...+. .....+++++..+|+++. ++.++.|+.. +|+.. -.....+.
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~-~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~ 81 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQ-VQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGS 81 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeEEecCCC-CccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCC
Confidence 46666 5578899999864 553 334443322 233456667788888754 6778888775 45432 22222222
Q ss_pred cccCceeeccCCEEEEEeC-CCcEEEEEcCCCCcee---eeEeecCCcceeeeeeeeCCCEEEEEee-cCcEEEEC-CC-
Q 002615 673 IFGSPAIDEVHDVLYVAST-SGRLTAISVKALPFHT---LWLHELEVPAFASLCITSANRHVICCLV-DGHVVALD-SS- 745 (900)
Q Consensus 673 ~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~---~w~~~~~~~~~~s~~~~~~~~~i~~~~~-~g~v~~~d-~~- 745 (900)
....++++++..+|+++. ++.+..|+.++ .|.. +..... ........+.++++.+|++.. ++.|.+|| .+
T Consensus 82 -p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~-~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 82 -PTHISTDHQGRFLFSASYNANCVSVSPLDK-DGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred -ceEEEECCCCCEEEEEEcCCCeEEEEEECC-CCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 233455666778888875 67888998864 1322 211111 111123345667778887765 47899998 44
Q ss_pred CCEE------eeecCCCceecccc-ccc-cCCCeEEEEee-CCeEEEEeCC--CCceeeEEecCC--ceecccccccccc
Q 002615 746 GSII------WRCRTGGPIFAGPC-TSF-ALPSQVLICSR-NGSIYSFEQE--SGNLLWEYSVGD--PITASAYIDEHLQ 812 (900)
Q Consensus 746 G~~~------w~~~~~~~~~~~~~-~~~-~~~~~l~~g~~-dg~l~~~d~~--tG~~~w~~~~~~--~~~~~~~~~~~~~ 812 (900)
|.+. .+...+ ..|. +.. ..+..+|+.+. ++.|.+|+.+ +|++........ .....+.....
T Consensus 159 g~l~~~~~~~~~~~~g----~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-- 232 (330)
T PRK11028 159 GHLVAQEPAEVTTVEG----AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAAD-- 232 (330)
T ss_pred CcccccCCCceecCCC----CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcccee--
Confidence 4331 111111 1121 112 23456788765 7889888876 455533222110 00000000000
Q ss_pred cccccccCCCeEEEEEcC-CCcEEEEEeecCcccccccccccceeeeeeec---cCCccccCceeeCCEEEEeee-CCeE
Q 002615 813 LKLESCLSIDRLVCICTS-SGSIHILRVNLDVTGKENQSKDHMVQEFAKLE---LQGDIFSSPVMIGGRVFVGCR-DDYI 887 (900)
Q Consensus 813 ~~~~~~~~~~~~l~~g~~-~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~ss~~~~~~~l~vg~~-dg~l 887 (900)
....++++++|++.. ++.|.+|+.+.... . .+...... .+..+..+| ++.+||++.+ ++.+
T Consensus 233 ---i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~-~--------~~~~~~~~~~~~p~~~~~~~--dg~~l~va~~~~~~v 298 (330)
T PRK11028 233 ---IHITPDGRHLYACDRTASLISVFSVSEDGS-V--------LSFEGHQPTETQPRGFNIDH--SGKYLIAAGQKSHHI 298 (330)
T ss_pred ---EEECCCCCEEEEecCCCCeEEEEEEeCCCC-e--------EEEeEEEeccccCCceEECC--CCCEEEEEEccCCcE
Confidence 001234788999865 67899998864310 0 01122211 122222222 5779999886 7778
Q ss_pred EEEEc--ccccc
Q 002615 888 YCIAL--ETQHL 897 (900)
Q Consensus 888 ~~ld~--~tg~~ 897 (900)
..|+. .+|.+
T Consensus 299 ~v~~~~~~~g~l 310 (330)
T PRK11028 299 SVYEIDGETGLL 310 (330)
T ss_pred EEEEEcCCCCcE
Confidence 88754 45654
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.7e-05 Score=76.37 Aligned_cols=190 Identities=13% Similarity=0.093 Sum_probs=109.4
Q ss_pred eEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEec--CCCEEEEEeeCCEEEEEECCCCcEEEEEecCCce-eee
Q 002615 558 IYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLA--DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV-KCQ 634 (900)
Q Consensus 558 ~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~-~~~ 634 (900)
..|.++-..|.+.+||..||+.+-+++........+.+.. ....|++++.||.|.+||.++-...-++...... ...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4577777889999999999999888876654333444443 3346899999999999999876544333332211 111
Q ss_pred eeEeC--CCCEEEEecC----CCeEEEEECCCCeE-EEee--ccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCc
Q 002615 635 PVVDA--PRQLIWCGSH----DHNLYALDFRNYRC-VYKL--PCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPF 705 (900)
Q Consensus 635 ~~~~~--~~~~i~~gs~----dg~l~~~d~~~g~~-~w~~--~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g 705 (900)
..++. .++.+-+|+. +-.|+.||.+.-+. +..+ .....+..-.....+.+.|+.|+.+|.+..||.+...-
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 22332 3455555642 45688999876543 2211 11222322222333457899999999999999774210
Q ss_pred e--eeeEeecCCcceeeeeeee-CCCEEEEEeecCcEEEEC-CCCCE
Q 002615 706 H--TLWLHELEVPAFASLCITS-ANRHVICCLVDGHVVALD-SSGSI 748 (900)
Q Consensus 706 ~--~~w~~~~~~~~~~s~~~~~-~~~~i~~~~~~g~v~~~d-~~G~~ 748 (900)
+ .+-..+... .+....... .-++||+-+..+.++.|+ ..|..
T Consensus 201 eDaL~~viN~~s-SI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 201 EDALLHVINHGS-SIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred hhhHHHhhcccc-eeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence 0 111111111 111222221 123678777777777777 55543
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.2e-05 Score=80.28 Aligned_cols=235 Identities=14% Similarity=0.111 Sum_probs=136.2
Q ss_pred ceeEecCCCEEE-EEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccC
Q 002615 592 SAAVLADFSQVV-VGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG 670 (900)
Q Consensus 592 ~~~~~~~~~~i~-vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~ 670 (900)
.+-+++||.+++ +|.|.=.|.+||..+-.+.....+...++...+++++-..+++-..|.+|-. ..+-| .-+...++
T Consensus 56 ~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~Ief-Hak~G-~hy~~RIP 133 (703)
T KOG2321|consen 56 RIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEF-HAKYG-RHYRTRIP 133 (703)
T ss_pred eeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeee-hhhcC-eeeeeecC
Confidence 456788988866 4778888999999888887766666666655555443222222223333321 11222 11111111
Q ss_pred CccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEE
Q 002615 671 GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSII 749 (900)
Q Consensus 671 ~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~ 749 (900)
..- -..++....-.||++.....||++|++. |..+--+.........+.+....+.+.+|+.+|.+-+|| .+-..+
T Consensus 134 ~~G-RDm~y~~~scDly~~gsg~evYRlNLEq--GrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv 210 (703)
T KOG2321|consen 134 KFG-RDMKYHKPSCDLYLVGSGSEVYRLNLEQ--GRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRV 210 (703)
T ss_pred cCC-ccccccCCCccEEEeecCcceEEEEccc--cccccccccccccceeeeecCccceEEecccCceEEEecchhhhhh
Confidence 100 0111221123467766677899999998 877766665544445555666688999999999999999 555444
Q ss_pred eeecCCCceeccc---------cccccCCC-eEEEEeeCCeEEEEeCCCCceeeEEecCC--ceeccccccccccccccc
Q 002615 750 WRCRTGGPIFAGP---------CTSFALPS-QVLICSRNGSIYSFEQESGNLLWEYSVGD--PITASAYIDEHLQLKLES 817 (900)
Q Consensus 750 w~~~~~~~~~~~~---------~~~~~~~~-~l~~g~~dg~l~~~d~~tG~~~w~~~~~~--~~~~~~~~~~~~~~~~~~ 817 (900)
-.+.....+-+.| .+.+..++ .+-+|+..|.++.||..+.+++...+... ++....+.+.
T Consensus 211 ~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~-------- 282 (703)
T KOG2321|consen 211 GTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT-------- 282 (703)
T ss_pred eeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc--------
Confidence 3333222211111 12232323 68899999999999999888776544332 2222222211
Q ss_pred ccCCCeEEEEEcCCCcEEEEEeecC
Q 002615 818 CLSIDRLVCICTSSGSIHILRVNLD 842 (900)
Q Consensus 818 ~~~~~~~l~~g~~~G~v~~~d~~~~ 842 (900)
.+...++..+...+.+||..+|
T Consensus 283 ---~~q~~v~S~Dk~~~kiWd~~~G 304 (703)
T KOG2321|consen 283 ---DQQNKVVSMDKRILKIWDECTG 304 (703)
T ss_pred ---CCCceEEecchHHhhhcccccC
Confidence 1233444445667899999877
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00056 Score=71.01 Aligned_cols=303 Identities=15% Similarity=0.123 Sum_probs=158.6
Q ss_pred ceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEE-----Ee--eCCEEEEEECCCCcEEEEEecCC
Q 002615 557 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVV-----GC--YKGKIYFLDYLTGDIYWTFQTCG 629 (900)
Q Consensus 557 ~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~v-----g~--~dg~l~~~d~~tG~~~w~~~~~~ 629 (900)
++++...+.|. ++.+++.+|+.+. ...+-.+...+-++++|..|.. |+ ..+.||.++.++|+.....-.+.
T Consensus 50 GD~IiFt~~Dd-lWe~slk~g~~~r-itS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTyfGr 127 (668)
T COG4946 50 GDRIIFTCCDD-LWEYSLKDGKPLR-ITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITYFGR 127 (668)
T ss_pred CcEEEEEechH-HHHhhhccCCeeE-EecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEEecc
Confidence 44555445554 8999999998764 3334445567778888876655 22 24579999999998764322222
Q ss_pred ceeeeeeEeCCCCEEEEecC------CCeEEEEECC----------------------------------------CCeE
Q 002615 630 EVKCQPVVDAPRQLIWCGSH------DHNLYALDFR----------------------------------------NYRC 663 (900)
Q Consensus 630 ~~~~~~~~~~~~~~i~~gs~------dg~l~~~d~~----------------------------------------~g~~ 663 (900)
...-..-+.+++..|+.... =-.+|.++.. +...
T Consensus 128 ~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~LnlGpathiv~~dg~ivigRntydLP~WK~YkGGtrGk 207 (668)
T COG4946 128 RFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLNLGPATHIVIKDGIIVIGRNTYDLPHWKGYKGGTRGK 207 (668)
T ss_pred ccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeeccCCceeeEEEeCCEEEEccCcccCcccccccCCccce
Confidence 21111112222221111100 0011221111 1123
Q ss_pred EEeeccCC----------ccccCceeeccCCEEEEEeC---CCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEE
Q 002615 664 VYKLPCGG----------SIFGSPAIDEVHDVLYVAST---SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHV 730 (900)
Q Consensus 664 ~w~~~~~~----------~~~~~~~~~~~~~~l~v~t~---~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i 730 (900)
+|....++ ...++|++.. +++|+-|. -|.+|..|++ |+-+-++..-..- ..-....++.++
T Consensus 208 lWis~d~g~tFeK~vdl~~~vS~PmIV~--~RvYFlsD~eG~GnlYSvdld---GkDlrrHTnFtdY-Y~R~~nsDGkrI 281 (668)
T COG4946 208 LWISSDGGKTFEKFVDLDGNVSSPMIVG--ERVYFLSDHEGVGNLYSVDLD---GKDLRRHTNFTDY-YPRNANSDGKRI 281 (668)
T ss_pred EEEEecCCcceeeeeecCCCcCCceEEc--ceEEEEecccCccceEEeccC---CchhhhcCCchhc-cccccCCCCcEE
Confidence 45433332 2356777775 88888775 3678888877 5544433221111 112233345555
Q ss_pred EEEeecCcEEEEC-CCCCEEeeecCC--------Cceeccccc----cccCCCeEEEEeeCCeEEEEeCCCCceeeEEec
Q 002615 731 ICCLVDGHVVALD-SSGSIIWRCRTG--------GPIFAGPCT----SFALPSQVLICSRNGSIYSFEQESGNLLWEYSV 797 (900)
Q Consensus 731 ~~~~~~g~v~~~d-~~G~~~w~~~~~--------~~~~~~~~~----~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~ 797 (900)
+. +..|.|+.|| .+-+ +-+...+ .+.+..|.- ....+|..++--..|..+.+++-.|-.+ ++
T Consensus 282 vF-q~~GdIylydP~td~-lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~i---qv 356 (668)
T COG4946 282 VF-QNAGDIYLYDPETDS-LEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSI---QV 356 (668)
T ss_pred EE-ecCCcEEEeCCCcCc-ceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeE---Ec
Confidence 44 4678999999 4433 2222222 233444321 1122444444445677888886655433 22
Q ss_pred CCc--eecccccccccccccccccCCCeEEEEEcCCC-cEEEEEeecCcccccccccccceeeeeeeccCCccccCceee
Q 002615 798 GDP--ITASAYIDEHLQLKLESCLSIDRLVCICTSSG-SIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMI 874 (900)
Q Consensus 798 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G-~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~~ 874 (900)
+.+ +-..- .......+++|+.|| .|-++|..++ ++....+--|.+++--+-.
T Consensus 357 ~~~~~VrY~r------------~~~~~e~~vigt~dgD~l~iyd~~~~-------------e~kr~e~~lg~I~av~vs~ 411 (668)
T COG4946 357 GKKGGVRYRR------------IQVDPEGDVIGTNDGDKLGIYDKDGG-------------EVKRIEKDLGNIEAVKVSP 411 (668)
T ss_pred CCCCceEEEE------------EccCCcceEEeccCCceEEEEecCCc-------------eEEEeeCCccceEEEEEcC
Confidence 222 21111 111245788999999 7999998866 2222223334444433333
Q ss_pred C-CEEEEeeeCCeEEEEEcccccc
Q 002615 875 G-GRVFVGCRDDYIYCIALETQHL 897 (900)
Q Consensus 875 ~-~~l~vg~~dg~l~~ld~~tg~~ 897 (900)
+ ..+.++.....|..+|..+|+.
T Consensus 412 dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 412 DGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred CCcEEEEEcCceEEEEEEecCCCe
Confidence 3 4588888888899999998875
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00088 Score=72.37 Aligned_cols=282 Identities=17% Similarity=0.201 Sum_probs=145.9
Q ss_pred EEEEEeeC----CEEEEEEC--CCCcEEEEEec-CCceeeeeeEeCCCCEEEEecC----CCeEEEEECCC--CeEEE--
Q 002615 601 QVVVGCYK----GKIYFLDY--LTGDIYWTFQT-CGEVKCQPVVDAPRQLIWCGSH----DHNLYALDFRN--YRCVY-- 665 (900)
Q Consensus 601 ~i~vg~~d----g~l~~~d~--~tG~~~w~~~~-~~~~~~~~~~~~~~~~i~~gs~----dg~l~~~d~~~--g~~~w-- 665 (900)
.+|+|++. +.||.|+. ++|++...... .....+...++++++.||+... ++.|.+|+... |++..
T Consensus 1 ~~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 1 TLYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred CEEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 47899998 67877765 77776543222 2223344566778899999865 46777665543 55543
Q ss_pred eeccCCccccCceeeccCCEEEEEeC-CCcEEEEEcCCCCceeeeEe-----ecC--------CcceeeeeeeeCCCEEE
Q 002615 666 KLPCGGSIFGSPAIDEVHDVLYVAST-SGRLTAISVKALPFHTLWLH-----ELE--------VPAFASLCITSANRHVI 731 (900)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~w~~-----~~~--------~~~~~s~~~~~~~~~i~ 731 (900)
+....+..-...++++++..||++.. +|.+..++++.. |.+.... ... .+......+.++++.+|
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~-g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~ 159 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDD-GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY 159 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCC-cccceeeeecccCCCCCcccccccccceeEEECCCCCEEE
Confidence 23323443344566677788999885 778888888752 5433321 110 11123445566778888
Q ss_pred EEee-cCcEEEEC-C--CCCEEeeecCCCceecccc-cccc-CCCeEEEEee-CCeEEEEeCC--CCceeeEEecCC---
Q 002615 732 CCLV-DGHVVALD-S--SGSIIWRCRTGGPIFAGPC-TSFA-LPSQVLICSR-NGSIYSFEQE--SGNLLWEYSVGD--- 799 (900)
Q Consensus 732 ~~~~-~g~v~~~d-~--~G~~~w~~~~~~~~~~~~~-~~~~-~~~~l~~g~~-dg~l~~~d~~--tG~~~w~~~~~~--- 799 (900)
+... ...|+.|+ . ++++.-.....-+.-+.|. +.+. ....+|+.+. ++.|..|+.. +|++........
T Consensus 160 v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 160 VPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE 239 (345)
T ss_dssp EEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred EEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence 8643 34677776 3 3334221111111112221 1111 2446777653 5667777666 665543221111
Q ss_pred ceecccccccccccccccccCCCeEEEEEcC-CCcEEEEEeecCcccccccccccceeeeeeeccCCccccCcee--eCC
Q 002615 800 PITASAYIDEHLQLKLESCLSIDRLVCICTS-SGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGG 876 (900)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~--~~~ 876 (900)
....... .. .....++++++|+... .+.|.+|+.+.. .+. .+........+..-....+ +++
T Consensus 240 ~~~~~~~-~~-----~i~ispdg~~lyvsnr~~~sI~vf~~d~~-~g~--------l~~~~~~~~~G~~Pr~~~~s~~g~ 304 (345)
T PF10282_consen 240 GFTGENA-PA-----EIAISPDGRFLYVSNRGSNSISVFDLDPA-TGT--------LTLVQTVPTGGKFPRHFAFSPDGR 304 (345)
T ss_dssp TSCSSSS-EE-----EEEE-TTSSEEEEEECTTTEEEEEEECTT-TTT--------EEEEEEEEESSSSEEEEEE-TTSS
T ss_pred cccccCC-ce-----eEEEecCCCEEEEEeccCCEEEEEEEecC-CCc--------eEEEEEEeCCCCCccEEEEeCCCC
Confidence 0000000 00 0112334788888765 456888888421 111 1223333333332222233 578
Q ss_pred EEEEeee-CCeEEEE--Eccccccc
Q 002615 877 RVFVGCR-DDYIYCI--ALETQHLE 898 (900)
Q Consensus 877 ~l~vg~~-dg~l~~l--d~~tg~~~ 898 (900)
.||+++. ++.|.+| |.++|+++
T Consensus 305 ~l~Va~~~s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 305 YLYVANQDSNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp EEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EEEEEecCCCeEEEEEEeCCCCcEE
Confidence 9999885 4577766 45688764
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00066 Score=69.64 Aligned_cols=239 Identities=15% Similarity=0.140 Sum_probs=145.4
Q ss_pred eCCceEEEEec----------CCCeEEEEECCCCcEEEEEecCC--ce-----eeceeEecCCCEEEEEee--CCEEEEE
Q 002615 554 KDSDIYLFVGS----------HSHKFICADAKRSSVLWEIKLEG--RI-----ECSAAVLADFSQVVVGCY--KGKIYFL 614 (900)
Q Consensus 554 ~~~~~~v~igs----------~~g~l~~~d~~tG~~~w~~~~~~--~~-----~~~~~~~~~~~~i~vg~~--dg~l~~~ 614 (900)
+.++..+|+.+ ....|..||..|-++.++..++. +. .....++.++.+++|-.. ...|-.+
T Consensus 44 spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVV 123 (342)
T PF06433_consen 44 SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVV 123 (342)
T ss_dssp -TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEE
T ss_pred CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEE
Confidence 34566666633 22358999999999999988775 32 123457788888888643 4579999
Q ss_pred ECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECC-CCeEEEeecc-----CCccccCceeeccCCEEEE
Q 002615 615 DYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFR-NYRCVYKLPC-----GGSIFGSPAIDEVHDVLYV 688 (900)
Q Consensus 615 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~-~g~~~w~~~~-----~~~~~~~~~~~~~~~~l~v 688 (900)
|.+.++.+-.+++++=...-|. .+..+..-+.||.+..+.+. .|+...+... ..+++..+.....++.+|+
T Consensus 124 Dl~~~kvv~ei~~PGC~~iyP~---~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F 200 (342)
T PF06433_consen 124 DLAAKKVVGEIDTPGCWLIYPS---GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYF 200 (342)
T ss_dssp ETTTTEEEEEEEGTSEEEEEEE---ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEE
T ss_pred ECCCCceeeeecCCCEEEEEec---CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEE
Confidence 9999999988888763333332 23456677789998887766 6776633211 2346666776666788999
Q ss_pred EeCCCcEEEEEcCCCCcee--eeEeecCC--------cceeeeeeeeCCCEEEEEeecC----------cEEEEC-CCCC
Q 002615 689 ASTSGRLTAISVKALPFHT--LWLHELEV--------PAFASLCITSANRHVICCLVDG----------HVVALD-SSGS 747 (900)
Q Consensus 689 ~t~~g~l~~~~~~~~~g~~--~w~~~~~~--------~~~~s~~~~~~~~~i~~~~~~g----------~v~~~d-~~G~ 747 (900)
-|.+|.++..+.....-+. -|..-... ....-.++....+++|+--..| .|.++| .+++
T Consensus 201 ~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k 280 (342)
T PF06433_consen 201 VSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK 280 (342)
T ss_dssp EBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE
T ss_pred EecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe
Confidence 9999999999987522122 23221100 0112234445567888753321 367777 7777
Q ss_pred EEeeecCCCceeccccccccCCCeEEEEe-eCCeEEEEeCCCCceeeEEe
Q 002615 748 IIWRCRTGGPIFAGPCTSFALPSQVLICS-RNGSIYSFEQESGNLLWEYS 796 (900)
Q Consensus 748 ~~w~~~~~~~~~~~~~~~~~~~~~l~~g~-~dg~l~~~d~~tG~~~w~~~ 796 (900)
.+.+++...++.+.. +..+..-.||..+ .++.|+.+|..+|+++.+.+
T Consensus 281 rv~Ri~l~~~~~Si~-Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 281 RVARIPLEHPIDSIA-VSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEEEEEEESEEE-EESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEEEeCCCccceEE-EccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 776666555543332 2333334566554 46899999999999987664
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.1e-05 Score=80.29 Aligned_cols=187 Identities=13% Similarity=0.130 Sum_probs=109.8
Q ss_pred CCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCC-ccee
Q 002615 641 RQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV-PAFA 719 (900)
Q Consensus 641 ~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~-~~~~ 719 (900)
.-+++.|+..+.+..||.+...+....+-+........+...+.+|..++..|.|...+..+ +...-.+..+. ....
T Consensus 91 S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t--~~~tt~f~~~sgqsvR 168 (673)
T KOG4378|consen 91 SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT--KQKTTTFTIDSGQSVR 168 (673)
T ss_pred ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc--CccccceecCCCCeEE
Confidence 35566778889999999985444433333333333344444456677778888898888776 43322222221 1111
Q ss_pred eeeeeeC-CCEEEEEeecCcEEEECCCCC-EEeeec--CCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEE
Q 002615 720 SLCITSA-NRHVICCLVDGHVVALDSSGS-IIWRCR--TGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEY 795 (900)
Q Consensus 720 s~~~~~~-~~~i~~~~~~g~v~~~d~~G~-~~w~~~--~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~ 795 (900)
-...... ...+.+++++|.|..||.+|. +++.+. ...|. ..-|......-.++....|..|+.||..+.+..-.+
T Consensus 169 ll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~-~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l 247 (673)
T KOG4378|consen 169 LLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPC-RGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL 247 (673)
T ss_pred EeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCc-CcceecCCccceEEEecccceEEEeeccccccccee
Confidence 1112222 234566788999999995453 333222 11121 111222223334555678999999998766555444
Q ss_pred ecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecC
Q 002615 796 SVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 842 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~ 842 (900)
....+..+..+... +-++++|+..|.|+.||.+.-
T Consensus 248 ~y~~Plstvaf~~~------------G~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 248 TYSHPLSTVAFSEC------------GTYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred eecCCcceeeecCC------------ceEEEeecCCceEEEEecccC
Confidence 44555544444443 889999999999999999854
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00045 Score=77.03 Aligned_cols=221 Identities=14% Similarity=0.101 Sum_probs=125.8
Q ss_pred CeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeC---CEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCE
Q 002615 567 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK---GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL 643 (900)
Q Consensus 567 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~d---g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 643 (900)
..|+.+|.+ |+..-..........++.+++++..|+..+++ ..||.+|..+|+..-.....+ ....+.+.+++..
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKG-SNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCC-CccceEECCCCCE
Confidence 368888875 43322222333344578899999888777653 359999999997653322332 3356778887777
Q ss_pred EEE-ecCCC--eEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCC-C--cEEEEEcCCCCceeeeEeecCCcc
Q 002615 644 IWC-GSHDH--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS-G--RLTAISVKALPFHTLWLHELEVPA 717 (900)
Q Consensus 644 i~~-gs~dg--~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~-g--~l~~~~~~~~~g~~~w~~~~~~~~ 717 (900)
|++ .+.+| .||.+|..+++.. +...+......+...+++..+++.+.. | .++.++..+ ++.. ........
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~--g~~~-~lt~~g~~ 329 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSGLR-RLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG--GAAQ-RVTFTGSY 329 (427)
T ss_pred EEEEEccCCCceEEEEECCCCCcE-ECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC--CceE-EEecCCCC
Confidence 654 45555 4888888776543 333333445567777767777766542 3 466666554 4321 11122222
Q ss_pred eeeeeeeeCCCEEEEEeecC---cEEEEC-CCCCEEeeecCCCceeccccccccCCCeEEEEeeCC---eEEEEeCCCCc
Q 002615 718 FASLCITSANRHVICCLVDG---HVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNG---SIYSFEQESGN 790 (900)
Q Consensus 718 ~~s~~~~~~~~~i~~~~~~g---~v~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg---~l~~~d~~tG~ 790 (900)
..++.+.+++..++..+.++ .|+.+| .+|+...-.. ... ...+.... ++..|++.+.++ .++.++. +|.
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~~~-~~~p~~sp-dg~~l~~~~~~~g~~~l~~~~~-~g~ 405 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-TTR-DESPSFAP-NGRYILYATQQGGRSVLAAVSS-DGR 405 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-CCC-ccCceECC-CCCEEEEEEecCCCEEEEEEEC-CCC
Confidence 23456677777777665444 588899 7776543222 111 12222222 234566655433 4777776 566
Q ss_pred eeeEEec
Q 002615 791 LLWEYSV 797 (900)
Q Consensus 791 ~~w~~~~ 797 (900)
.......
T Consensus 406 ~~~~l~~ 412 (427)
T PRK02889 406 IKQRLSV 412 (427)
T ss_pred ceEEeec
Confidence 6655543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00042 Score=77.66 Aligned_cols=215 Identities=12% Similarity=0.149 Sum_probs=123.9
Q ss_pred eEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEee---CCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEE
Q 002615 568 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY---KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI 644 (900)
Q Consensus 568 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~---dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i 644 (900)
.|+.+|.+.+.... +..+.....++.+++|++.|+..++ +..||.+|..+|+..-.....+ ....+.+.+++..|
T Consensus 183 ~l~~~d~dg~~~~~-lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~l 260 (435)
T PRK05137 183 RLAIMDQDGANVRY-LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPG-MTFAPRFSPDGRKV 260 (435)
T ss_pred EEEEECCCCCCcEE-EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCC-cccCcEECCCCCEE
Confidence 68888886555433 3333444557889999988777654 3579999999987643222222 33466777777666
Q ss_pred E-EecCCC--eEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCC-C--cEEEEEcCCCCceeeeEeecCCcce
Q 002615 645 W-CGSHDH--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS-G--RLTAISVKALPFHTLWLHELEVPAF 718 (900)
Q Consensus 645 ~-~gs~dg--~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~-g--~l~~~~~~~~~g~~~w~~~~~~~~~ 718 (900)
+ +.+.++ .||.+|..+++... ..........+...+++..|++.+.. | .++.+|.++ ++. .+........
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g--~~~-~~lt~~~~~~ 336 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG--SNP-RRISFGGGRY 336 (435)
T ss_pred EEEEecCCCceEEEEECCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC--CCe-EEeecCCCcc
Confidence 4 444444 59999999887643 33333445567777767777776642 2 688888765 433 2222222223
Q ss_pred eeeeeeeCCCEEEEEeec---CcEEEEC-CCCCEEeeecCCCceeccccccccCCCeEEEEee-C-----CeEEEEeCCC
Q 002615 719 ASLCITSANRHVICCLVD---GHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSR-N-----GSIYSFEQES 788 (900)
Q Consensus 719 ~s~~~~~~~~~i~~~~~~---g~v~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~-d-----g~l~~~d~~t 788 (900)
..+.+.++++.++....+ ..++.+| .++.. .....+. ....+.... .+..|++.+. . ..||.+|...
T Consensus 337 ~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~-~~~~p~~sp-DG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 337 STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGF-LVEGPTWAP-NGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred cCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCC-CCCCCeECC-CCCEEEEEEccCCCCCcceEEEEECCC
Confidence 455677778887766543 2577777 44332 2222221 112222222 2344555433 2 2578888765
Q ss_pred Cce
Q 002615 789 GNL 791 (900)
Q Consensus 789 G~~ 791 (900)
++.
T Consensus 414 ~~~ 416 (435)
T PRK05137 414 RNE 416 (435)
T ss_pred Cce
Confidence 443
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00056 Score=70.12 Aligned_cols=195 Identities=16% Similarity=0.205 Sum_probs=112.7
Q ss_pred ceeEecCCCEEEEE-eeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeecc-
Q 002615 592 SAAVLADFSQVVVG-CYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC- 669 (900)
Q Consensus 592 ~~~~~~~~~~i~vg-~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~- 669 (900)
++++....+.+|+. ...+.|+.+++.+++.. .+..++ ....++...++.+|++..++ +..+|.++|+.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG--PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESSS--EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC--CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence 45666534455554 45789999998887654 234444 22334442458888887654 66669999976554443
Q ss_pred -CC---ccccCceeeccCCEEEEEeCC---------CcEEEEEcCCCCceeee-EeecCCcceeeeeeeeCCCEEEEE-e
Q 002615 670 -GG---SIFGSPAIDEVHDVLYVASTS---------GRLTAISVKALPFHTLW-LHELEVPAFASLCITSANRHVICC-L 734 (900)
Q Consensus 670 -~~---~~~~~~~~~~~~~~l~v~t~~---------g~l~~~~~~~~~g~~~w-~~~~~~~~~~s~~~~~~~~~i~~~-~ 734 (900)
+. ......++++ ++.+|+++.. |.+++++.+ ++... ...... -...++..+++.+|+. +
T Consensus 80 ~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~---~~~~~~~~~~~~--pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD---GKVTVVADGLGF--PNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp TTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT---SEEEEEEEEESS--EEEEEEETTSSEEEEEET
T ss_pred CCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC---CeEEEEecCccc--ccceEECCcchheeeccc
Confidence 21 2223345555 5779998742 568888876 23221 112221 1345566777778765 4
Q ss_pred ecCcEEEEC--CCCC-EE----e-eecCCCceeccccccccCCCeEEEEee-CCeEEEEeCCCCceeeEEecCC
Q 002615 735 VDGHVVALD--SSGS-II----W-RCRTGGPIFAGPCTSFALPSQVLICSR-NGSIYSFEQESGNLLWEYSVGD 799 (900)
Q Consensus 735 ~~g~v~~~d--~~G~-~~----w-~~~~~~~~~~~~~~~~~~~~~l~~g~~-dg~l~~~d~~tG~~~w~~~~~~ 799 (900)
..+.|+.++ ..+. +. + ....... ....+..+.+++||++.. .+.|+++|++ |+++-.+.++.
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g--~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~ 224 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPG--YPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV 224 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSC--EEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCc--CCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC
Confidence 567888888 3343 21 1 2221110 011233556889999865 6889999987 99988777773
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0027 Score=68.57 Aligned_cols=271 Identities=14% Similarity=0.155 Sum_probs=145.0
Q ss_pred EEEEecCC----CeEEEEE--CCCCcEEEEEec-CCceeeceeEecCCCEEEEEee----CCEEEEEECC--CCcEEE--
Q 002615 559 YLFVGSHS----HKFICAD--AKRSSVLWEIKL-EGRIECSAAVLADFSQVVVGCY----KGKIYFLDYL--TGDIYW-- 623 (900)
Q Consensus 559 ~v~igs~~----g~l~~~d--~~tG~~~w~~~~-~~~~~~~~~~~~~~~~i~vg~~----dg~l~~~d~~--tG~~~w-- 623 (900)
++|+|+.. +.|+.|+ ..+|++...... ........+++++++++|+... +|.|..|+.. +|++..
T Consensus 1 ~~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 1 TLYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred CEEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 47888876 4666655 477776543221 1112234567788899999876 4577666544 365543
Q ss_pred EEecCCceeeeeeEeCCCCEEEEecC-CCeEEEEECCC-CeEEEeec---c--CCc--------cccCceeeccCCEEEE
Q 002615 624 TFQTCGEVKCQPVVDAPRQLIWCGSH-DHNLYALDFRN-YRCVYKLP---C--GGS--------IFGSPAIDEVHDVLYV 688 (900)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~i~~gs~-dg~l~~~d~~~-g~~~w~~~---~--~~~--------~~~~~~~~~~~~~l~v 688 (900)
+....+...+...+++++..+|++.+ +|.+..++... |.+..... . .+. -.-...++++++.+|+
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 34434555566677788889999875 67888888765 65443321 1 010 0112345666678888
Q ss_pred EeC-CCcEEEEEcCCCCceeeeEe--ecCC-cceeeeeeeeCCCEEEEEee-cCcEEEEC-C--CCCEEe--eecCCCce
Q 002615 689 AST-SGRLTAISVKALPFHTLWLH--ELEV-PAFASLCITSANRHVICCLV-DGHVVALD-S--SGSIIW--RCRTGGPI 758 (900)
Q Consensus 689 ~t~-~g~l~~~~~~~~~g~~~w~~--~~~~-~~~~s~~~~~~~~~i~~~~~-~g~v~~~d-~--~G~~~w--~~~~~~~~ 758 (900)
... ...|+.|+.+...++..... .... ..-....+.+++.++|+... ++.|.+++ . +|.... .......-
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 764 34688888876444332211 1111 11123455667788888754 56788877 4 664432 22211000
Q ss_pred ec---cc-ccccc-CCCeEEEEee-CCeEEEEeC--CCCceeeE--EecCCceecccccccccccccccccCCCeEEEEE
Q 002615 759 FA---GP-CTSFA-LPSQVLICSR-NGSIYSFEQ--ESGNLLWE--YSVGDPITASAYIDEHLQLKLESCLSIDRLVCIC 828 (900)
Q Consensus 759 ~~---~~-~~~~~-~~~~l~~g~~-dg~l~~~d~--~tG~~~w~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 828 (900)
+. .+ .+... ++..||+... .+.|.+|+. ++|++... +...........+ .+++++++++
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~-----------s~~g~~l~Va 309 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAF-----------SPDGRYLYVA 309 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE------------TTSSEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEE-----------eCCCCEEEEE
Confidence 00 11 11122 3456888765 345666664 66777542 3332221111111 2237888877
Q ss_pred c-CCCcEEEEEee
Q 002615 829 T-SSGSIHILRVN 840 (900)
Q Consensus 829 ~-~~G~v~~~d~~ 840 (900)
. .++.|.+|+.+
T Consensus 310 ~~~s~~v~vf~~d 322 (345)
T PF10282_consen 310 NQDSNTVSVFDID 322 (345)
T ss_dssp ETTTTEEEEEEEE
T ss_pred ecCCCeEEEEEEe
Confidence 6 56788888775
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00012 Score=77.92 Aligned_cols=184 Identities=11% Similarity=0.073 Sum_probs=111.0
Q ss_pred CceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCC-EEEEEeeCCEEEEEECCCCcE-------------
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFS-QVVVGCYKGKIYFLDYLTGDI------------- 621 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~-~i~vg~~dg~l~~~d~~tG~~------------- 621 (900)
.+..|..|+.+|.|..|...||.++|.+.+.+.|. ++.+.+... .|++...+..+..+|+.=|..
T Consensus 411 ~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~-~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~ 489 (733)
T KOG0650|consen 411 SGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIR-SVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASA 489 (733)
T ss_pred CcceeeecCCCCcEEEEEeecceEEEEEeecceeE-EEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcC
Confidence 56788889999999999999999999998887654 455555433 234444455566666554511
Q ss_pred -----------EEEEec----CCce---------eeeeeEeCCCCEEEEecC---CCeEEEEECCCCeEEEeeccCCccc
Q 002615 622 -----------YWTFQT----CGEV---------KCQPVVDAPRQLIWCGSH---DHNLYALDFRNYRCVYKLPCGGSIF 674 (900)
Q Consensus 622 -----------~w~~~~----~~~~---------~~~~~~~~~~~~i~~gs~---dg~l~~~d~~~g~~~w~~~~~~~~~ 674 (900)
.|.... ...+ +.+..+...+.++.+... ...++..++..++..--+...+...
T Consensus 490 ~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~v 569 (733)
T KOG0650|consen 490 PNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLV 569 (733)
T ss_pred CCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCce
Confidence 232110 0000 011122223334333222 2345555555544433333333333
Q ss_pred cCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC
Q 002615 675 GSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD 743 (900)
Q Consensus 675 ~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d 743 (900)
....+.+....++|+|.. .+..||+.. ...+.+...+...+++..+.+.++++++|++++.+..||
T Consensus 570 q~v~FHPs~p~lfVaTq~-~vRiYdL~k--qelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfD 635 (733)
T KOG0650|consen 570 QRVKFHPSKPYLFVATQR-SVRIYDLSK--QELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFD 635 (733)
T ss_pred eEEEecCCCceEEEEecc-ceEEEehhH--HHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEE
Confidence 334455555778998864 599999775 554444444555567888888899999999999999999
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.24 E-value=9.7e-05 Score=72.24 Aligned_cols=270 Identities=11% Similarity=0.127 Sum_probs=159.9
Q ss_pred CCceEEEEecCCCeEEEEECCC------------CcEE------EE-EecCCceeeceeEecCCCEEEEEeeCCEEEEEE
Q 002615 555 DSDIYLFVGSHSHKFICADAKR------------SSVL------WE-IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLD 615 (900)
Q Consensus 555 ~~~~~v~igs~~g~l~~~d~~t------------G~~~------w~-~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d 615 (900)
.++..+..|+.|-.|..+|... |... .. +..-+. .....+.+....+..|+.|++|..||
T Consensus 122 ~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~de-vn~l~FHPre~ILiS~srD~tvKlFD 200 (430)
T KOG0640|consen 122 PDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDE-VNDLDFHPRETILISGSRDNTVKLFD 200 (430)
T ss_pred CCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCc-ccceeecchhheEEeccCCCeEEEEe
Confidence 3566778889999999999751 1100 00 000111 23445666666788899999999999
Q ss_pred CCCCcEEEEEe--cCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCc---cccCceeeccCCEEEE-E
Q 002615 616 YLTGDIYWTFQ--TCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS---IFGSPAIDEVHDVLYV-A 689 (900)
Q Consensus 616 ~~tG~~~w~~~--~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~---~~~~~~~~~~~~~l~v-~ 689 (900)
...-..+.-++ ......-+..+.+.+..|.+|+.-..+..||.++-++.-....... -+...-+.. .+.+|+ +
T Consensus 201 fsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTa 279 (430)
T KOG0640|consen 201 FSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTA 279 (430)
T ss_pred cccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEe
Confidence 65433222111 1223334456778889999999888999999998777644332211 122222333 355555 7
Q ss_pred eCCCcEEEEEcCCCCceeeeEeec--CCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCC----ceeccc
Q 002615 690 STSGRLTAISVKALPFHTLWLHEL--EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG----PIFAGP 762 (900)
Q Consensus 690 t~~g~l~~~~~~~~~g~~~w~~~~--~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~----~~~~~~ 762 (900)
+.+|.+..||--+ ++.+-++.. ++...-+..+..++.++...+.|..+..|. .+|..+-++...+ ..+...
T Consensus 280 SkDG~IklwDGVS--~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtq 357 (430)
T KOG0640|consen 280 SKDGAIKLWDGVS--NRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQ 357 (430)
T ss_pred ccCCcEEeecccc--HHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhh
Confidence 7899999999544 555444322 122234445566677888888899999999 8898887765332 223333
Q ss_pred cccccCCCeEEEEe-eCCeEEEEeCCCCcee--eEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEe
Q 002615 763 CTSFALPSQVLICS-RNGSIYSFEQESGNLL--WEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 839 (900)
Q Consensus 763 ~~~~~~~~~l~~g~-~dg~l~~~d~~tG~~~--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~ 839 (900)
.+....++.+++.. ..+.+.+||..++..+ |.....+.+ -.++. .+.+.-+..|+.|-..+.|..
T Consensus 358 AvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~--R~i~H----------SP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 358 AVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAV--RWIVH----------SPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCc--eEEEe----------CCCCCceeeecccceeeeeee
Confidence 34444455555553 3577999999887653 443322221 11111 112455677777877777754
Q ss_pred e
Q 002615 840 N 840 (900)
Q Consensus 840 ~ 840 (900)
+
T Consensus 426 r 426 (430)
T KOG0640|consen 426 R 426 (430)
T ss_pred c
Confidence 3
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.7e-05 Score=72.51 Aligned_cols=229 Identities=16% Similarity=0.085 Sum_probs=132.7
Q ss_pred CceEEEEecCCCeEEEEECCC-CcEEEEEecCCceeeceeEe-cCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceee
Q 002615 556 SDIYLFVGSHSHKFICADAKR-SSVLWEIKLEGRIECSAAVL-ADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 633 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~-~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 633 (900)
.+..+++++.||.+..||..- -+++-.++-+.+-..++-.. ..+..+++++.||+|..|++.-++-+-+|..+.....
T Consensus 72 ~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 72 HENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred CcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 466788889999999999321 12232333333211122221 2334577789999999999888888888887777777
Q ss_pred eeeEeCCC-CEEEEecCCCeEEEEECCC-CeEEEeeccCC-ccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeE
Q 002615 634 QPVVDAPR-QLIWCGSHDHNLYALDFRN-YRCVYKLPCGG-SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWL 710 (900)
Q Consensus 634 ~~~~~~~~-~~i~~gs~dg~l~~~d~~~-g~~~w~~~~~~-~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~ 710 (900)
...+.+.. +.+...|.|+++..||.+. |+.+- +..+. .+.+.--..-+...++.|..++.++.||+.+- -.++..
T Consensus 152 ~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~-r~pl~e 229 (311)
T KOG0277|consen 152 QAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL-RTPLFE 229 (311)
T ss_pred EEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhc-ccccee
Confidence 77777654 4455678899999999764 44443 43333 22222222233567888899999999998861 123333
Q ss_pred eecCCcceeeeeeeeC-CCEEEEEeecCcEEEEC-CCC-CEEeeecCCCceeccccccccCCCeEEEEeeCCeEEEEeC
Q 002615 711 HELEVPAFASLCITSA-NRHVICCLVDGHVVALD-SSG-SIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQ 786 (900)
Q Consensus 711 ~~~~~~~~~s~~~~~~-~~~i~~~~~~g~v~~~d-~~G-~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~ 786 (900)
...+.-.......++. ...+..+++|-++..+| ..+ ..+-++..........-.+....+.+...+.|+.+|+|++
T Consensus 230 L~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 230 LNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 3222211111122211 23566678888888888 322 1221222111111111112224567777788999999985
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00012 Score=71.66 Aligned_cols=238 Identities=17% Similarity=0.178 Sum_probs=139.5
Q ss_pred ceeEecCCCEEEEEeeCCEEEEEECCC------------CcE------EEEEecCCceeeeeeEeCCCCEEEEecCCCeE
Q 002615 592 SAAVLADFSQVVVGCYKGKIYFLDYLT------------GDI------YWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNL 653 (900)
Q Consensus 592 ~~~~~~~~~~i~vg~~dg~l~~~d~~t------------G~~------~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l 653 (900)
.+.++.||..+..|+.|..|..+|.+- |.. +.++--+..-.....+.+....+..|+.|+++
T Consensus 117 ~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tv 196 (430)
T KOG0640|consen 117 AAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTV 196 (430)
T ss_pred eeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeE
Confidence 467888888888899999999998651 111 00110111112334566666778889999999
Q ss_pred EEEECCCCeEEEeecc--CCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCC---cceeeeeeeeCCC
Q 002615 654 YALDFRNYRCVYKLPC--GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV---PAFASLCITSANR 728 (900)
Q Consensus 654 ~~~d~~~g~~~w~~~~--~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~---~~~~s~~~~~~~~ 728 (900)
..+|...-.....++. .-...-+..+.+.++.|++||....+..||.++ .+..-.-.... ..+........+.
T Consensus 197 KlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T--~QcfvsanPd~qht~ai~~V~Ys~t~~ 274 (430)
T KOG0640|consen 197 KLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT--YQCFVSANPDDQHTGAITQVRYSSTGS 274 (430)
T ss_pred EEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccc--eeEeeecCcccccccceeEEEecCCcc
Confidence 9999764322221211 122233445566688999999999999999987 54433322111 1122333444455
Q ss_pred EEEEEeecCcEEEEC-CCCCEEeeecC--CCceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEEecCCc----e
Q 002615 729 HVICCLVDGHVVALD-SSGSIIWRCRT--GGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDP----I 801 (900)
Q Consensus 729 ~i~~~~~~g~v~~~d-~~G~~~w~~~~--~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~----~ 801 (900)
..+.++.||.|..|| .+++.+-++.. ++.-.++. +....+..|+....|..++.|...+|..+-.|.-.+. .
T Consensus 275 lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa-~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~ 353 (430)
T KOG0640|consen 275 LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSA-VFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQK 353 (430)
T ss_pred EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeE-EEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchh
Confidence 556688999999999 77766544432 22222221 1122234566667788999999999998876643211 1
Q ss_pred ecccccccccccccccccCCCeEEEEEc-CCCcEEEEEeecC
Q 002615 802 TASAYIDEHLQLKLESCLSIDRLVCICT-SSGSIHILRVNLD 842 (900)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~~G~v~~~d~~~~ 842 (900)
..+-.+++. .+.++..-. ..+.+..||.++.
T Consensus 354 ~rtqAvFNh----------tEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 354 HRTQAVFNH----------TEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred hhhhhhhcC----------ccceEEccccccCceeeccccch
Confidence 111111110 044444433 4678999999876
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00012 Score=78.77 Aligned_cols=275 Identities=14% Similarity=0.085 Sum_probs=149.6
Q ss_pred CceEEEEecCCCeEEEEECCCCcEE------EEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEE--Eec
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVL------WEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWT--FQT 627 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~~~------w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~--~~~ 627 (900)
....++++..+|.|..+|...-+.. .....+.....-....+....++..+.|.++.+||.+++++.-. +..
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G 142 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG 142 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecc
Confidence 4678999999999999997754443 11122222222233344555677788899999999998877543 222
Q ss_pred C-CceeeeeeEeCC-CCEEEEecCCCeEEEEECCCCeE-----------------------------EEeeccCCccccC
Q 002615 628 C-GEVKCQPVVDAP-RQLIWCGSHDHNLYALDFRNYRC-----------------------------VYKLPCGGSIFGS 676 (900)
Q Consensus 628 ~-~~~~~~~~~~~~-~~~i~~gs~dg~l~~~d~~~g~~-----------------------------~w~~~~~~~~~~~ 676 (900)
+ +.+++. ++... ...+.+|+.||.+..||..-... .|+. ..+.+.++
T Consensus 143 H~~SvkS~-cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA-~s~ti~ss 220 (720)
T KOG0321|consen 143 HTGSVKSE-CFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA-ASNTIFSS 220 (720)
T ss_pred cccccchh-hhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc-ccCceeee
Confidence 2 333333 34333 34556689999999999752110 0110 01233332
Q ss_pred --ceeeccCCEEEEEeC-CCcEEEEEcCCCCceeeeEe------ecCC-----cceeeeeeeeCCCEEEEEeecCcEEEE
Q 002615 677 --PAIDEVHDVLYVAST-SGRLTAISVKALPFHTLWLH------ELEV-----PAFASLCITSANRHVICCLVDGHVVAL 742 (900)
Q Consensus 677 --~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~w~~------~~~~-----~~~~s~~~~~~~~~i~~~~~~g~v~~~ 742 (900)
.++-.++..|..++. |+.+..||+.. -....+. .... ..+.+......+.++|+.+.|+.||+|
T Consensus 221 vTvv~fkDe~tlaSaga~D~~iKVWDLRk--~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~y 298 (720)
T KOG0321|consen 221 VTVVLFKDESTLASAGAADSTIKVWDLRK--NYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFY 298 (720)
T ss_pred eEEEEEeccceeeeccCCCcceEEEeecc--cccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEE
Confidence 122223466666665 89999999875 2211111 1111 112344445557899999999999999
Q ss_pred C-CCC--CEEeeecC--CCceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEEecCCceeccccccccccccccc
Q 002615 743 D-SSG--SIIWRCRT--GGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLES 817 (900)
Q Consensus 743 d-~~G--~~~w~~~~--~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 817 (900)
| ..- .++..+.. ....+.-. ...-.+..+..|+.|...|.|...+-+.--....++....+... -
T Consensus 299 nm~s~s~sP~~~~sg~~~~sf~vks-~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~---------w 368 (720)
T KOG0321|consen 299 NMRSLSISPVAEFSGKLNSSFYVKS-ELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVR---------W 368 (720)
T ss_pred eccccCcCchhhccCcccceeeeee-ecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEe---------e
Confidence 9 321 22222211 00111110 11223557888899999999887664321111112211110000 0
Q ss_pred ccCCCeEEEEEcCCCcEEEEEeecCcc
Q 002615 818 CLSIDRLVCICTSSGSIHILRVNLDVT 844 (900)
Q Consensus 818 ~~~~~~~l~~g~~~G~v~~~d~~~~~~ 844 (900)
+.....-++.+++|-++.+|+..++..
T Consensus 369 ~pS~~t~v~TcSdD~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 369 LPSATTPVATCSDDFRVKIWRLSNGLE 395 (720)
T ss_pred ccccCCCceeeccCcceEEEeccCchh
Confidence 011144567778999999999976643
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0001 Score=85.13 Aligned_cols=246 Identities=18% Similarity=0.131 Sum_probs=140.2
Q ss_pred ceeEecC-CCEEEEEeeCCEEEEEECCC--Cc---E--EEEEe-cCCceeeeeeEeCCCCEEEEecCCCeEEEEECCC--
Q 002615 592 SAAVLAD-FSQVVVGCYKGKIYFLDYLT--GD---I--YWTFQ-TCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRN-- 660 (900)
Q Consensus 592 ~~~~~~~-~~~i~vg~~dg~l~~~d~~t--G~---~--~w~~~-~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~-- 660 (900)
..+++.+ +.+.+.|+.||+|..||... |+ . .-++. .++.+.. ......+..+.+++.||.+..++...
T Consensus 1053 k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~-vt~~~~~~~~Av~t~DG~v~~~~id~~~ 1131 (1431)
T KOG1240|consen 1053 KLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEK-VTMCGNGDQFAVSTKDGSVRVLRIDHYN 1131 (1431)
T ss_pred ceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEE-EEeccCCCeEEEEcCCCeEEEEEccccc
Confidence 3444444 47888899999999999653 22 1 11222 2223332 33344567788889999888776654
Q ss_pred Ce-----EEEeecc--CCccccC---ceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecC--CcceeeeeeeeCCC
Q 002615 661 YR-----CVYKLPC--GGSIFGS---PAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE--VPAFASLCITSANR 728 (900)
Q Consensus 661 g~-----~~w~~~~--~~~~~~~---~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~--~~~~~s~~~~~~~~ 728 (900)
++ +..+.+. .|.+... ..... ...|..+|..+++..||+.. -...|+.+.. .....+.++.....
T Consensus 1132 ~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~-S~~lvy~T~~~~iv~~D~r~--~~~~w~lk~~~~hG~vTSi~idp~~~ 1208 (1431)
T KOG1240|consen 1132 VSKRVATQVRIPNLKKDGVVVSMHAFTAIVQ-SHVLVYATDLSRIVSWDTRM--RHDAWRLKNQLRHGLVTSIVIDPWCN 1208 (1431)
T ss_pred cccceeeeeecccccCCCceEEeeccccccc-ceeEEEEEeccceEEecchh--hhhHHhhhcCccccceeEEEecCCce
Confidence 21 1111111 2222211 11122 13677788889999999887 7788987654 33456667777777
Q ss_pred EEEEEeecCcEEEEC-CCCCEE--eeecCCCceeccccccccC-CC-eEEEEe-eCCeEEEEeCCCCceeeEEecCC--c
Q 002615 729 HVICCLVDGHVVALD-SSGSII--WRCRTGGPIFAGPCTSFAL-PS-QVLICS-RNGSIYSFEQESGNLLWEYSVGD--P 800 (900)
Q Consensus 729 ~i~~~~~~g~v~~~d-~~G~~~--w~~~~~~~~~~~~~~~~~~-~~-~l~~g~-~dg~l~~~d~~tG~~~w~~~~~~--~ 800 (900)
.+++|+..|.+.+|| .=+.++ |+++...++--..+-.... +. .+..+. ..+.|..|+..+|.-...+-... +
T Consensus 1209 WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p 1288 (1431)
T KOG1240|consen 1209 WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAP 1288 (1431)
T ss_pred EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCc
Confidence 899999999999999 655554 7776554432211111111 12 233343 56789999999885432222221 1
Q ss_pred e--ecccccc--ccccccc--ccccCCCeEEEEEcCCCcEEEEEeec
Q 002615 801 I--TASAYID--EHLQLKL--ESCLSIDRLVCICTSSGSIHILRVNL 841 (900)
Q Consensus 801 ~--~~~~~~~--~~~~~~~--~~~~~~~~~l~~g~~~G~v~~~d~~~ 841 (900)
. +..|.-+ .-..+.+ ......++.++.|++|++|+.||...
T Consensus 1289 ~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1289 ILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred chhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 0 1111110 0001111 11233478899999999999999854
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.2e-05 Score=87.46 Aligned_cols=329 Identities=17% Similarity=0.195 Sum_probs=188.0
Q ss_pred ccCCCCCCcEEEEccCcchHhHH-HHHHHHHHhCCeEEecCchhhhhcHHHHHHHHHHcCeeEEEecHHHHHHHHHHHhh
Q 002615 3 DLYPLHGEELLLFKTSISFIDHL-QEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~~~~~~~~l~~~~vt~~~~~Ps~l~~l~~~~~~ 81 (900)
..+++..+++++.....+-..|+ ..++.+|++|.|.+-.| .+....|..+.+++.+++.+++..=-.-|.........
T Consensus 303 ~v~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p-~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~ 381 (1363)
T KOG3628|consen 303 HVFPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCP-KEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQE 381 (1363)
T ss_pred hccccCcccceeeccCcccccchhhhhhhhhhcCceeecCc-hhhcCCCcchhhhhccceeEEEeecccccCcccccccC
Confidence 35667778888777766666555 34889999999999984 55667888999999999999887654444333221111
Q ss_pred ---------ccCCCCCCCcCEEEEeccCCChhhHHH----HHhhCCCceEEeec-----------------Ccccccccc
Q 002615 82 ---------QHNMHVPSSLKLLVLSGEVLPLSMWDI----ISKLFPNISILNLY-----------------GSTEVSGDC 131 (900)
Q Consensus 82 ---------~~~~~~~~~lr~v~~gGe~l~~~~~~~----~~~~~~~~~l~~~Y-----------------G~TE~~~~~ 131 (900)
.....++++||.+++.-+.+..+..+. |.+-+......-.| +++|.+...
T Consensus 382 ~p~a~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~ 461 (1363)
T KOG3628|consen 382 DPKATLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVS 461 (1363)
T ss_pred CcccccchhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhccc
Confidence 111245789999999999988764433 33312111111122 224444332
Q ss_pred ceecccCC---cc--c----------------cccCCCCcceeeeccC-CcEEEEecCCC----CCCCccEEEEcccccc
Q 002615 132 TYFDCKRL---PS--I----------------LEMSTLKSVPIGLPIS-NCDIVLVESDT----VKPDEGEIYAGGLCLS 185 (900)
Q Consensus 132 ~~~~~~~~---~~--~----------------~~~~~~~~~~~G~p~~-~~~~~i~d~~~----~~~~~GEl~v~g~~~~ 185 (900)
...+.... +. . ........-.+|.-.+ +..+.+++++. ..++.|||||.++++.
T Consensus 462 ~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~ 541 (1363)
T KOG3628|consen 462 IRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTDEVGEIWVSSNSLG 541 (1363)
T ss_pred ccCcccccccCccceeeeccccccceEEEcchhhhhhcCccccceecccceEEEEeCCCcccccccCcceeEEEecCCcc
Confidence 22111000 00 0 0000011112333333 34455565554 3467899999999999
Q ss_pred ccccCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEcccCCcE-EECceeeChHHH--------
Q 002615 186 NGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTI-KINGQRMALEEI-------- 256 (900)
Q Consensus 186 ~gY~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~i-k~~G~rv~~~~i-------- 256 (900)
.+|+.-+..|...|...+.... ........+.|||=+|.+++ |.++++|-++|++ .+.|.+.+..+|
T Consensus 542 ~~~~al~~~t~~~F~~~~~~s~---~~~~~n~~FmRtGLlGFv~~-gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~ 617 (1363)
T KOG3628|consen 542 KLFYALDKQTENTFKATPVESS---GKPPSNVPFMRTGLLGFVHN-GKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVE 617 (1363)
T ss_pred cceeeccccccceEEeeecccc---CCCCccchhhhhcceeeeeC-CeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHH
Confidence 9999988888888866544321 12233467889999998775 5566666555554 458888776554
Q ss_pred --HHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchH--HHHHHHHHHHHhh--CCCCccCCEEEEcCCcCCCC
Q 002615 257 --EHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSE--IFLSSIKSWVSSK--LPLAMIPNRFVFMDSLPMTS 330 (900)
Q Consensus 257 --E~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~--~~~~~l~~~l~~~--l~~~~~P~~~~~v~~lP~t~ 330 (900)
+.+.+..+.|-++.++-. +.+++.++-++.....+ +...++-+.+... +..|.+ .++.-+.||||+
T Consensus 618 ~iktV~R~v~~VF~~saf~~------E~~~Vv~~esP~a~e~~~~q~~~~v~q~l~~iHqv~vyCi--livP~~tLPrt~ 689 (1363)
T KOG3628|consen 618 LIKTVMRGVIAVFDVSAFED------EHIVVVVLESPDATEENSFQWMSRVFQALDSIHQVGVYCI--LIVPANTLPRTP 689 (1363)
T ss_pred HHHHHHhccceEEEEeeeec------ceEEEEEEeCcchhhhhhhhHHHHHHHHHHHHhcccceEE--EEeccccCCCcc
Confidence 344556677888877751 23333333333221111 1122222222221 222221 244456799999
Q ss_pred CCCcchhhhccccc
Q 002615 331 SGKVDYASLSASTS 344 (900)
Q Consensus 331 ~GKidr~~L~~~~~ 344 (900)
-|-|.-.++++.+.
T Consensus 690 ~~Gi~~~~~k~~F~ 703 (1363)
T KOG3628|consen 690 LGGIHNNECKQAFL 703 (1363)
T ss_pred ccccccHHHHHHHH
Confidence 77788777765543
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00045 Score=68.29 Aligned_cols=185 Identities=15% Similarity=0.145 Sum_probs=119.3
Q ss_pred CEEEEEeeCCEEEEEECCCCcEEEEEecC---Cce--eeeeeEeCCCCEEEEecCCCeEEEEEC-CCCeEE--EeeccC-
Q 002615 600 SQVVVGCYKGKIYFLDYLTGDIYWTFQTC---GEV--KCQPVVDAPRQLIWCGSHDHNLYALDF-RNYRCV--YKLPCG- 670 (900)
Q Consensus 600 ~~i~vg~~dg~l~~~d~~tG~~~w~~~~~---~~~--~~~~~~~~~~~~i~~gs~dg~l~~~d~-~~g~~~--w~~~~~- 670 (900)
.++.+.+.+.-|..||+-||+..-.+..- +++ ..+..+.+++..||+|- ...|..+|. +.|..- ......
T Consensus 124 ~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~ 202 (406)
T KOG2919|consen 124 NLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKG 202 (406)
T ss_pred ceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcc
Confidence 34556667888999999999998765432 222 23456777888888874 667999998 555321 111111
Q ss_pred ----CccccCceeeccC-CEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEee-cCcEEEEC-
Q 002615 671 ----GSIFGSPAIDEVH-DVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLV-DGHVVALD- 743 (900)
Q Consensus 671 ----~~~~~~~~~~~~~-~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~-~g~v~~~d- 743 (900)
..+++..++.+.. ..+.+++....+-.|+-.. +.++.....+...+.......+++.+|+|.. +..|.+||
T Consensus 203 k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~--~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDi 280 (406)
T KOG2919|consen 203 KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG--RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDI 280 (406)
T ss_pred cccccceeeeeeccCCCCcceeeecccceeeeEecCC--CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEee
Confidence 2344444444432 4677888777666666444 6677666555555666777888999999874 67899999
Q ss_pred -CCCCEEeeecC-----CCceeccccccccCCCeEEEEeeCCeEEEEeCCC-Cc
Q 002615 744 -SSGSIIWRCRT-----GGPIFAGPCTSFALPSQVLICSRNGSIYSFEQES-GN 790 (900)
Q Consensus 744 -~~G~~~w~~~~-----~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~t-G~ 790 (900)
..+.++|.+.. +..|+.-. ...++.|..|+.+|.|.+||.++ |.
T Consensus 281 R~~~~pv~~L~rhv~~TNQRI~FDl---d~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 281 RYSRDPVYALERHVGDTNQRILFDL---DPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred hhccchhhhhhhhccCccceEEEec---CCCCceeeccCCCccEEEEecCCCCC
Confidence 57777776532 22232221 12244566667899999999887 65
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00072 Score=70.27 Aligned_cols=215 Identities=20% Similarity=0.194 Sum_probs=120.3
Q ss_pred ceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEE-EEEecC-Cceee-
Q 002615 557 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIY-WTFQTC-GEVKC- 633 (900)
Q Consensus 557 ~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~-w~~~~~-~~~~~- 633 (900)
+..+|+--..+.|+.||+.+|+.. .+..++.+. +......++ ..++|..| ++.++.++|..+ -..... +....
T Consensus 37 ~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~~~~-~~~~~d~~g-~Lv~~~~g-~~~~~~~~~~~~t~~~~~~~~~~~~r 112 (307)
T COG3386 37 GALLWVDILGGRIHRLDPETGKKR-VFPSPGGFS-SGALIDAGG-RLIACEHG-VRLLDPDTGGKITLLAEPEDGLPLNR 112 (307)
T ss_pred CEEEEEeCCCCeEEEecCCcCceE-EEECCCCcc-cceeecCCC-eEEEEccc-cEEEeccCCceeEEeccccCCCCcCC
Confidence 445788778899999999988653 344455443 333333333 44455555 777787766652 111111 11111
Q ss_pred --eeeEeCCCCEEEEecCC------------CeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeC-CCcEEEE
Q 002615 634 --QPVVDAPRQLIWCGSHD------------HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST-SGRLTAI 698 (900)
Q Consensus 634 --~~~~~~~~~~i~~gs~d------------g~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~ 698 (900)
-..++ ..+.+|+++.. |.||.+|+. |..+.....+-.+....++++++..+|++-. .+.++++
T Consensus 113 ~ND~~v~-pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~ 190 (307)
T COG3386 113 PNDGVVD-PDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRY 190 (307)
T ss_pred CCceeEc-CCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEE
Confidence 11233 34778988655 458999874 4333333222334456677777778888765 4788888
Q ss_pred EcCCCCcee----eeEeecCCcceeeeeeeeCCCEEEEEeecC--cEEEECCCCCEEeeecCCCceeccccccccCCCeE
Q 002615 699 SVKALPFHT----LWLHELEVPAFASLCITSANRHVICCLVDG--HVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQV 772 (900)
Q Consensus 699 ~~~~~~g~~----~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g--~v~~~d~~G~~~w~~~~~~~~~~~~~~~~~~~~~l 772 (900)
+.....|.. .+......+..........++++|++...+ .|.+|+.+|+++-++..+....+.++..-..-+.|
T Consensus 191 ~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L 270 (307)
T COG3386 191 DLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTL 270 (307)
T ss_pred ecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEE
Confidence 776311221 111111111222223445678999655543 89999966999888877654444443322223566
Q ss_pred EEEee
Q 002615 773 LICSR 777 (900)
Q Consensus 773 ~~g~~ 777 (900)
|+.+.
T Consensus 271 ~iTs~ 275 (307)
T COG3386 271 YITSA 275 (307)
T ss_pred EEEec
Confidence 66653
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00015 Score=71.61 Aligned_cols=188 Identities=15% Similarity=0.079 Sum_probs=123.2
Q ss_pred eEEEEe-cCCCeEEEEECCCCcEEEEEecCC---ce--eeceeEecCCCEEEEEeeCCEEEEEEC-CCCcEEEEEec--C
Q 002615 558 IYLFVG-SHSHKFICADAKRSSVLWEIKLEG---RI--ECSAAVLADFSQVVVGCYKGKIYFLDY-LTGDIYWTFQT--C 628 (900)
Q Consensus 558 ~~v~ig-s~~g~l~~~d~~tG~~~w~~~~~~---~~--~~~~~~~~~~~~i~vg~~dg~l~~~d~-~tG~~~w~~~~--~ 628 (900)
..+|.. +.+.-|..||+-||+.+-.+..-+ ++ ..+..+++||.+||+| +...|..||. +.|...-.+.+ .
T Consensus 123 t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~ 201 (406)
T KOG2919|consen 123 TNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTK 201 (406)
T ss_pred cceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhc
Confidence 344444 456679999999999887765432 21 2367899999999988 5778999998 66754322221 1
Q ss_pred -----CceeeeeeEeCC-CCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeC-CCcEEEEEcC
Q 002615 629 -----GEVKCQPVVDAP-RQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST-SGRLTAISVK 701 (900)
Q Consensus 629 -----~~~~~~~~~~~~-~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~ 701 (900)
..+.++..+.+. .+.+.+|++..++-.+.-..+.++......+.-+.......+++.+|+|.. +..|.+||++
T Consensus 202 ~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 202 GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence 234455555553 456788988877666655566777665554444555556666789999885 5679999998
Q ss_pred CCCceeeeEeecCCcc---eeeeeeeeCCCEEEEEeecCcEEEEC-CC-CC
Q 002615 702 ALPFHTLWLHELEVPA---FASLCITSANRHVICCLVDGHVVALD-SS-GS 747 (900)
Q Consensus 702 ~~~g~~~w~~~~~~~~---~~s~~~~~~~~~i~~~~~~g~v~~~d-~~-G~ 747 (900)
. .+.++|....+... ..-..+.+.+..+..|..+|.|.+|| ++ |.
T Consensus 282 ~-~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 282 Y-SRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred h-ccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence 5 46778876544321 11112334456677777899999999 54 55
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0021 Score=71.68 Aligned_cols=218 Identities=12% Similarity=0.080 Sum_probs=125.4
Q ss_pred eEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEee---CCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEE
Q 002615 568 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY---KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI 644 (900)
Q Consensus 568 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~---dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i 644 (900)
.|+.+|.+.+... .+..+.....++.+++||..++..+. +..||.+|..+|+........+. ...+.+++++..|
T Consensus 180 ~l~~~d~dg~~~~-~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~-~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH-NGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCCCCCE-EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC-cCCeEECCCCCEE
Confidence 6888887654432 22223334567899999987766543 34799999998876543333332 3457788877766
Q ss_pred EEe-cCCC--eEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCC---cEEEEEcCCCCceeeeEeecCCcce
Q 002615 645 WCG-SHDH--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSG---RLTAISVKALPFHTLWLHELEVPAF 718 (900)
Q Consensus 645 ~~g-s~dg--~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g---~l~~~~~~~~~g~~~w~~~~~~~~~ 718 (900)
++. +.+| .||.+|.++|+...... +......+...+++..|++.+..+ .+|.+|+++ |+.. +........
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~lt~-~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~--g~~~-~lt~~~~~~ 333 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQVTD-GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING--GAPQ-RITWEGSQN 333 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEccC-CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC--CCeE-EeecCCCCc
Confidence 654 4344 59999999887654333 233455677777677777666543 677788775 4432 222222222
Q ss_pred eeeeeeeCCCEEEEEeec---CcEEEEC-CCCCEEeeecCCCceeccccccccCCCeEEEEeeCCe---EEEEeCCCCce
Q 002615 719 ASLCITSANRHVICCLVD---GHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGS---IYSFEQESGNL 791 (900)
Q Consensus 719 ~s~~~~~~~~~i~~~~~~---g~v~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~---l~~~d~~tG~~ 791 (900)
..+.+.+++..++....+ ..++.+| .+|+.. .+..... ...|... .++..|++.+.++. ++.++. +|..
T Consensus 334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~-~~~p~~S-pDG~~i~~~s~~~~~~~l~~~~~-~G~~ 409 (429)
T PRK03629 334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFL-DETPSIA-PNGTMVIYSSSQGMGSVLNLVST-DGRF 409 (429)
T ss_pred cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCC-CCCceEC-CCCCEEEEEEcCCCceEEEEEEC-CCCC
Confidence 345666777777665433 3477888 666543 2221111 1122222 12445666666553 666775 4555
Q ss_pred eeEE
Q 002615 792 LWEY 795 (900)
Q Consensus 792 ~w~~ 795 (900)
...+
T Consensus 410 ~~~l 413 (429)
T PRK03629 410 KARL 413 (429)
T ss_pred eEEC
Confidence 4443
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00097 Score=74.62 Aligned_cols=218 Identities=17% Similarity=0.172 Sum_probs=126.5
Q ss_pred eEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeC---CEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEE
Q 002615 568 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK---GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI 644 (900)
Q Consensus 568 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~d---g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i 644 (900)
.|+.+|...+... .+..+.....++.+++++..|+..+++ ..||.+|..+|+........ .....+.+.+++..|
T Consensus 185 ~l~i~D~~g~~~~-~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~-g~~~~~~~SpDG~~l 262 (433)
T PRK04922 185 ALQVADSDGYNPQ-TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR-GINGAPSFSPDGRRL 262 (433)
T ss_pred EEEEECCCCCCce-EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC-CCccCceECCCCCEE
Confidence 5888887644443 333333334578889998888877643 36999999988765433222 234466777777766
Q ss_pred EE-ecCCC--eEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeC-CC--cEEEEEcCCCCceeeeEeecCCcce
Q 002615 645 WC-GSHDH--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST-SG--RLTAISVKALPFHTLWLHELEVPAF 718 (900)
Q Consensus 645 ~~-gs~dg--~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~g--~l~~~~~~~~~g~~~w~~~~~~~~~ 718 (900)
++ .+.+| .||.+|..+|+... ..........+...+++..+++.+. +| .+|.+|.++ ++... ........
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~--g~~~~-lt~~g~~~ 338 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG--GSAER-LTFQGNYN 338 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC--CCeEE-eecCCCCc
Confidence 54 44444 59999999887643 3333334456777776677777664 33 488888775 44321 21222222
Q ss_pred eeeeeeeCCCEEEEEeecC---cEEEEC-CCCCEEeeecCCCceeccccccccCCCeEEEEeeC---CeEEEEeCCCCce
Q 002615 719 ASLCITSANRHVICCLVDG---HVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRN---GSIYSFEQESGNL 791 (900)
Q Consensus 719 ~s~~~~~~~~~i~~~~~~g---~v~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~d---g~l~~~d~~tG~~ 791 (900)
..+.+.++++.++..+.++ .|+.+| .+|+.. .+..+.. ...+... .++..|++.+.+ +.|+.++.+ |..
T Consensus 339 ~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~-~~~p~~s-pdG~~i~~~s~~~g~~~L~~~~~~-g~~ 414 (433)
T PRK04922 339 ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSL-DESPSFA-PNGSMVLYATREGGRGVLAAVSTD-GRV 414 (433)
T ss_pred cCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCC-CCCceEC-CCCCEEEEEEecCCceEEEEEECC-CCc
Confidence 3566777788877765433 588888 677654 3322211 1122211 123445555542 358888864 444
Q ss_pred eeEE
Q 002615 792 LWEY 795 (900)
Q Consensus 792 ~w~~ 795 (900)
...+
T Consensus 415 ~~~l 418 (433)
T PRK04922 415 RQRL 418 (433)
T ss_pred eEEc
Confidence 4433
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.07 E-value=4e-05 Score=81.11 Aligned_cols=260 Identities=11% Similarity=0.085 Sum_probs=140.9
Q ss_pred ccccccccccc--ccccccceEEeeCCceEEEEecCCCeEEEEECCC--------CcEEEEEecCCceeeceeEecCCCE
Q 002615 532 FIQELWKVHME--SCVDASPLVVLKDSDIYLFVGSHSHKFICADAKR--------SSVLWEIKLEGRIECSAAVLADFSQ 601 (900)
Q Consensus 532 ~~~~~W~~~~~--~~v~~sp~v~~~~~~~~v~igs~~g~l~~~d~~t--------G~~~w~~~~~~~~~~~~~~~~~~~~ 601 (900)
.+++.|...+. ...++.-...+......++.++.+|.|..|++.. =+.+|.+..+.....+.++..++..
T Consensus 279 a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~ 358 (577)
T KOG0642|consen 279 AFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEH 358 (577)
T ss_pred hhheecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceE
Confidence 45666876542 2222222222334567789999999999898821 2467888877665567888888899
Q ss_pred EEEEeeCCEEEEEECC------CCc---E-EEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeecc--
Q 002615 602 VVVGCYKGKIYFLDYL------TGD---I-YWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC-- 669 (900)
Q Consensus 602 i~vg~~dg~l~~~d~~------tG~---~-~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~-- 669 (900)
+|.|+.||.|.+|+.. +.- . .-.+..+........+......|...+.||+++.|++....+ ..+..
T Consensus 359 ~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~ 437 (577)
T KOG0642|consen 359 CYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPK 437 (577)
T ss_pred EEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCcc
Confidence 9999999999999432 211 0 011122222233334555566788888999999998766544 11111
Q ss_pred CCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEE-eecCcEEEECCCCCE
Q 002615 670 GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICC-LVDGHVVALDSSGSI 748 (900)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~-~~~g~v~~~d~~G~~ 748 (900)
...+-.+.-... -.+.....+..+..+.+.+ .+. .....+.. +...+...++.-+++
T Consensus 438 e~g~Plsvd~~s--s~~a~~~~s~~~~~~~~~~--~ev------------------~s~~~~~~s~~~~~~~~~~~in~v 495 (577)
T KOG0642|consen 438 EHGYPLSVDRTS--SRPAHSLASFRFGYTSIDD--MEV------------------VSDLLIFESSASPGPRRYPQINKV 495 (577)
T ss_pred ccCCcceEeecc--chhHhhhhhcccccccchh--hhh------------------hhheeeccccCCCcccccCccceE
Confidence 110000000000 0000000011111111111 000 00111111 112222222222233
Q ss_pred EeeecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEE
Q 002615 749 IWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCIC 828 (900)
Q Consensus 749 ~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 828 (900)
+|. + ..+..|.+-.|+.+..+|..+|+++.....+-...++..++.+ +.++..+
T Consensus 496 Vs~----------~-----~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~n-----------g~~l~s~ 549 (577)
T KOG0642|consen 496 VSH----------P-----TADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPN-----------GPYLMSG 549 (577)
T ss_pred Eec----------C-----CCCeeEecccCCceecccccccccchheeeccceecceeecCC-----------CceEEee
Confidence 332 1 1235566667899999999999998876666555555555543 8899999
Q ss_pred cCCCcEEEEEee
Q 002615 829 TSSGSIHILRVN 840 (900)
Q Consensus 829 ~~~G~v~~~d~~ 840 (900)
+.||.+..|...
T Consensus 550 s~d~sv~l~kld 561 (577)
T KOG0642|consen 550 SHDGSVRLWKLD 561 (577)
T ss_pred cCCceeehhhcc
Confidence 999999998765
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00043 Score=70.30 Aligned_cols=197 Identities=10% Similarity=0.110 Sum_probs=128.6
Q ss_pred CCEEEEEeeCCEEEEEECCCC-----cEEEEEecCCceeeeeeEeCCCCEEEEecCC--CeEEEEECCCCeEEEeeccCC
Q 002615 599 FSQVVVGCYKGKIYFLDYLTG-----DIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD--HNLYALDFRNYRCVYKLPCGG 671 (900)
Q Consensus 599 ~~~i~vg~~dg~l~~~d~~tG-----~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~d--g~l~~~d~~~g~~~w~~~~~~ 671 (900)
++.+..+..+|.+..+..+.+ ++.|.. ++......--.+...+.+.+|+.. ..+-.||.++.+.+|..++-.
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvp 193 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVP 193 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccccceeee-cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCC
Confidence 357888888999999987744 344432 333222111122233455557777 779999999999999876521
Q ss_pred --------ccc-cCceeecc--CCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEE
Q 002615 672 --------SIF-GSPAIDEV--HDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVV 740 (900)
Q Consensus 672 --------~~~-~~~~~~~~--~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~ 740 (900)
+++ ....+.+. ...+..+|..+.+..||+.. .-.++-++.......++....++++.||+|...|.+.
T Consensus 194 nD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~-qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~ 272 (412)
T KOG3881|consen 194 NDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRH-QRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLA 272 (412)
T ss_pred CccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcc-cCcceeEeccccCcceeeeecCCCcEEEEecccchhh
Confidence 222 22222222 35678888999999999885 2356777777777778888888999999999999999
Q ss_pred EEC-CCCCEEee-ec-CCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEEecCC
Q 002615 741 ALD-SSGSIIWR-CR-TGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGD 799 (900)
Q Consensus 741 ~~d-~~G~~~w~-~~-~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~ 799 (900)
.|| ..|+..-. +. ..+.+.+..| ......+..++-|..|.++|.++.+++.+..+.+
T Consensus 273 ~FD~r~~kl~g~~~kg~tGsirsih~--hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs 332 (412)
T KOG3881|consen 273 KFDLRGGKLLGCGLKGITGSIRSIHC--HPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS 332 (412)
T ss_pred eecccCceeeccccCCccCCcceEEE--cCCCceEEeeccceeEEEeecccchhhhhhhhhc
Confidence 999 77766533 22 1122222211 1122357777889999999999977766544443
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0016 Score=72.76 Aligned_cols=219 Identities=16% Similarity=0.065 Sum_probs=122.0
Q ss_pred CeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeC---CEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCE
Q 002615 567 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK---GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL 643 (900)
Q Consensus 567 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~d---g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 643 (900)
..|+.+|.+.+.. .....+.....++.+++++..++..+++ ..||.||..+|+........+ ....+.+.+++..
T Consensus 184 ~~i~i~d~dg~~~-~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g-~~~~~~wSPDG~~ 261 (429)
T PRK01742 184 YEVRVADYDGFNQ-FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG-HNGAPAFSPDGSR 261 (429)
T ss_pred EEEEEECCCCCCc-eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC-ccCceeECCCCCE
Confidence 5788888764443 2333333344578999999888776654 369999999887543322222 2335677877777
Q ss_pred EEEe-cCCC--eEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEe-CCCcEEEEEcCCCCceeeeEeecCCccee
Q 002615 644 IWCG-SHDH--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHELEVPAFA 719 (900)
Q Consensus 644 i~~g-s~dg--~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~~~~~~~ 719 (900)
|+++ +.+| .||.+|..+++... ...+......+...+++..|++.+ .+|....|+.+...+..... .. .. .
T Consensus 262 La~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~-~~--~ 336 (429)
T PRK01742 262 LAFASSKDGVLNIYVMGANGGTPSQ-LTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GG-RG--Y 336 (429)
T ss_pred EEEEEecCCcEEEEEEECCCCCeEe-eccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cC-CC--C
Confidence 7665 4555 47888988776543 333334556777777667776655 34544444433211333221 11 11 2
Q ss_pred eeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCCceeccccccccCCCeEEEEeeCCeEEEEeC--CCCceeeEEe
Q 002615 720 SLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQ--ESGNLLWEYS 796 (900)
Q Consensus 720 s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~--~tG~~~w~~~ 796 (900)
.+.+.++++.+++.+. ..++.+| .+|+....... .. ...+.. ...+..|++++.+|....|.. .+|+..-++.
T Consensus 337 ~~~~SpDG~~ia~~~~-~~i~~~Dl~~g~~~~lt~~-~~-~~~~~~-sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 337 SAQISADGKTLVMING-DNVVKQDLTSGSTEVLSST-FL-DESPSI-SPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred CccCCCCCCEEEEEcC-CCEEEEECCCCCeEEecCC-CC-CCCceE-CCCCCEEEEEEcCCCceEEEEEECCCCceEEcc
Confidence 3456667777776655 4577789 77765321111 11 112211 112446777776775554432 3566554444
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0024 Score=71.47 Aligned_cols=220 Identities=15% Similarity=0.106 Sum_probs=123.3
Q ss_pred CeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeC---CEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCE
Q 002615 567 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK---GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL 643 (900)
Q Consensus 567 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~d---g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 643 (900)
..|+.+|...++.. .+........++.+++++.+++..+++ ..||.+|..+|+........+ ....+.+.+++..
T Consensus 170 ~~l~~~d~~g~~~~-~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~-~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGANPQ-TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPG-MNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCCCCE-EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCC-CccceEECCCCCE
Confidence 35888887644433 233333334577899999988877654 379999999997654333332 2334667777666
Q ss_pred EEE-ecCC--CeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCC-C--cEEEEEcCCCCceeeeEeecCCcc
Q 002615 644 IWC-GSHD--HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS-G--RLTAISVKALPFHTLWLHELEVPA 717 (900)
Q Consensus 644 i~~-gs~d--g~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~-g--~l~~~~~~~~~g~~~w~~~~~~~~ 717 (900)
|++ .+.+ ..||.+|..+++..... ........+...+++..|++.+.. + .++.+|..+ ++.. ........
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~--~~~~-~l~~~~~~ 323 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLTRLT-NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG--GEVR-RLTFRGGY 323 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEEECC-CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC--CCEE-EeecCCCC
Confidence 654 4433 35999999887654322 222333455666656777666543 2 588888775 4432 22222222
Q ss_pred eeeeeeeeCCCEEEEEeecC---cEEEEC-CCCCEEeeecCCCceeccccccccCCCeEEEEeeCC---eEEEEeCCCCc
Q 002615 718 FASLCITSANRHVICCLVDG---HVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNG---SIYSFEQESGN 790 (900)
Q Consensus 718 ~~s~~~~~~~~~i~~~~~~g---~v~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg---~l~~~d~~tG~ 790 (900)
...+.+.++++.++....++ .|+.+| .++.... ...... ...+.... .++.|++.+.++ .++.++ .+|+
T Consensus 324 ~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~-~~~p~~sp-dg~~l~~~~~~~~~~~l~~~~-~~g~ 399 (417)
T TIGR02800 324 NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDTGL-DESPSFAP-NGRMILYATTRGGRGVLGLVS-TDGR 399 (417)
T ss_pred ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCCCC-CCCceECC-CCCEEEEEEeCCCcEEEEEEE-CCCc
Confidence 34455666777777776654 688888 5554321 111111 11222111 244566665543 345544 4565
Q ss_pred eeeEEe
Q 002615 791 LLWEYS 796 (900)
Q Consensus 791 ~~w~~~ 796 (900)
....+.
T Consensus 400 ~~~~~~ 405 (417)
T TIGR02800 400 FRARLP 405 (417)
T ss_pred eeeECC
Confidence 554443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00024 Score=76.47 Aligned_cols=276 Identities=14% Similarity=0.132 Sum_probs=151.8
Q ss_pred ccccccccccccccceEEeeCCceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEE
Q 002615 535 ELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFL 614 (900)
Q Consensus 535 ~~W~~~~~~~v~~sp~v~~~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~ 614 (900)
++|+..-..||.- +.+..++..+.++. +.+++.||++.|..+-..+.+.....++..+.+|.....|+.|..+..|
T Consensus 5 ~~~r~~~~hci~d---~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W 80 (1081)
T KOG1538|consen 5 LTWRDKAEHCIND---IAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIW 80 (1081)
T ss_pred hhhhcccccchhe---eEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEe
Confidence 4577666667642 11222344455544 3469999999999988888777666678899999889999999999999
Q ss_pred ECCC-CcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCC
Q 002615 615 DYLT-GDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSG 693 (900)
Q Consensus 615 d~~t-G~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g 693 (900)
+.+- |.+ ++..++.+ .+..+.+-...+...+-+ .+-.|.++... +.+.+....+ .+.....++..+.+|-.+|
T Consensus 81 ~~klEG~L--kYSH~D~I-QCMsFNP~~h~LasCsLs-dFglWS~~qK~-V~K~kss~R~-~~CsWtnDGqylalG~~nG 154 (1081)
T KOG1538|consen 81 TSKLEGIL--KYSHNDAI-QCMSFNPITHQLASCSLS-DFGLWSPEQKS-VSKHKSSSRI-ICCSWTNDGQYLALGMFNG 154 (1081)
T ss_pred ccccccee--eeccCCee-eEeecCchHHHhhhcchh-hccccChhhhh-HHhhhhheeE-EEeeecCCCcEEEEeccCc
Confidence 8653 333 34444433 333444433334333322 12333333221 1111111111 1222334456788888899
Q ss_pred cEEEEEcCCCCceeeeEeecC----CcceeeeeeeeC-----CCEEEEEeecCcEEEECCCCCEEeeecCCCceeccccc
Q 002615 694 RLTAISVKALPFHTLWLHELE----VPAFASLCITSA-----NRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCT 764 (900)
Q Consensus 694 ~l~~~~~~~~~g~~~w~~~~~----~~~~~s~~~~~~-----~~~i~~~~~~g~v~~~d~~G~~~w~~~~~~~~~~~~~~ 764 (900)
++..-|.. |+..-..+.+ .+++ +.++.+. ++.+-+..++.++..+.-+|+.+-+-..- -|-..|+
T Consensus 155 TIsiRNk~---gEek~~I~Rpgg~Nspiw-si~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L--~FdP~Ci 228 (1081)
T KOG1538|consen 155 TISIRNKN---GEEKVKIERPGGSNSPIW-SICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRAL--NFDPCCI 228 (1081)
T ss_pred eEEeecCC---CCcceEEeCCCCCCCCce-EEEecCCCCCCccceEEEEeccceeEEEEecceeecccccC--CCCchhh
Confidence 88766533 5544444332 1222 2222222 34556666666666555567665422111 1122233
Q ss_pred c-ccCCCeEEEEeeCCeEEEEeCCCCceeeEEe-cCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEe
Q 002615 765 S-FALPSQVLICSRNGSIYSFEQESGNLLWEYS-VGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 839 (900)
Q Consensus 765 ~-~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~ 839 (900)
. ...+..+.+|+.|+.+..|- ..|-.+-+.. .++-+.+... .+.+..+.+|+.||+|-+|+.
T Consensus 229 sYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~------------~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 229 SYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQA------------KPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred eeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEE------------ccCCceEEEEEccCeeehhhh
Confidence 2 33466789999999888886 3454433221 1112222111 122778999999999999865
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00026 Score=75.61 Aligned_cols=261 Identities=11% Similarity=0.073 Sum_probs=128.1
Q ss_pred ceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCC-CEEEEecCCCeEEEEECCCCeEEEeeccC
Q 002615 592 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPR-QLIWCGSHDHNLYALDFRNYRCVYKLPCG 670 (900)
Q Consensus 592 ~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~-~~i~~gs~dg~l~~~d~~~g~~~w~~~~~ 670 (900)
+..+.+.|..+..|+.||+|..|...||..+|++...+.+.+. ++.+.. .-|+..+.+..+..+|+.=|..+-.....
T Consensus 405 ~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~v-aw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ 483 (733)
T KOG0650|consen 405 SISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSV-AWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTK 483 (733)
T ss_pred EEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEE-EecCCCCceeEEEEecCceEEeCccccchhhhcchh
Confidence 3445556678999999999999999999999999998876654 444432 22333444445777776655332221111
Q ss_pred CccccCceeeccCCEEEEEeCCCcEEEEEcCC---CCceeeeEeecCCcceeeeeeeeCCCEEEEEee---cCcEEEEC-
Q 002615 671 GSIFGSPAIDEVHDVLYVASTSGRLTAISVKA---LPFHTLWLHELEVPAFASLCITSANRHVICCLV---DGHVVALD- 743 (900)
Q Consensus 671 ~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~---~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~---~g~v~~~d- 743 (900)
....+.|.... . ++.+..|.... ..+.+.-......+ .........++++.+... +..+++..
T Consensus 484 ell~~~~~~~~--p-------~~~~~~W~~~~~~e~~~~v~~~I~~~k~-i~~vtWHrkGDYlatV~~~~~~~~VliHQL 553 (733)
T KOG0650|consen 484 ELLASAPNESE--P-------DAAVVTWSRASLDELEKGVCIVIKHPKS-IRQVTWHRKGDYLATVMPDSGNKSVLIHQL 553 (733)
T ss_pred hhhhcCCCccC--C-------cccceeechhhhhhhccceEEEEecCCc-cceeeeecCCceEEEeccCCCcceEEEEec
Confidence 11122211110 0 11122221110 00000001111111 112222233444433222 12333333
Q ss_pred CCCCEE--eeecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEEecCCceecccccccccccccccccCC
Q 002615 744 SSGSII--WRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSI 821 (900)
Q Consensus 744 ~~G~~~--w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (900)
+.+... ++... +.+.... ..-..-.++++|.. .|..||...+.++-+...+....++..+.. .
T Consensus 554 SK~~sQ~PF~ksk-G~vq~v~--FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg~kwiS~msihp-----------~ 618 (733)
T KOG0650|consen 554 SKRKSQSPFRKSK-GLVQRVK--FHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTGSKWISSMSIHP-----------N 618 (733)
T ss_pred ccccccCchhhcC-CceeEEE--ecCCCceEEEEecc-ceEEEehhHHHHHHHHhcCCeeeeeeeecC-----------C
Confidence 221111 11111 1111111 11123367777754 599999888777666555666555544443 2
Q ss_pred CeEEEEEcCCCcEEEEEeecCcccccccccccceeeeeeeccCCccccCceeeCC--EEEEeeeCCeEEEE
Q 002615 822 DRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGG--RVFVGCRDDYIYCI 890 (900)
Q Consensus 822 ~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~~~~--~l~vg~~dg~l~~l 890 (900)
|..+++|+.++++..+|.+-. .+.+....++.....+.+++.. ..-.|+.||.++++
T Consensus 619 GDnli~gs~d~k~~WfDldls------------skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 619 GDNLILGSYDKKMCWFDLDLS------------SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred CCeEEEecCCCeeEEEEcccC------------cchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 889999999999999998744 2333444455444444444433 22334444666655
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0004 Score=67.62 Aligned_cols=226 Identities=15% Similarity=0.125 Sum_probs=132.0
Q ss_pred CceEEEEecCCCeEEEEECCCCcEEEEEecCCceeecee--EecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceee
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAA--VLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 633 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~--~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 633 (900)
+.|-...+|.|+.+..||.+|-+..-.++.++.++..+. ++...-.|.+|+.+-.+..-|.++|..-.....+..-.-
T Consensus 113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred cCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 455566678899999999999999888888887764322 111223577788888899999999998777665543333
Q ss_pred eeeEeCCC-CEEEEecCCCeEEEEECCCC-eEEEeeccCC--------------ccccCceeeccCCEEEEEeCCCcEEE
Q 002615 634 QPVVDAPR-QLIWCGSHDHNLYALDFRNY-RCVYKLPCGG--------------SIFGSPAIDEVHDVLYVASTSGRLTA 697 (900)
Q Consensus 634 ~~~~~~~~-~~i~~gs~dg~l~~~d~~~g-~~~w~~~~~~--------------~~~~~~~~~~~~~~l~v~t~~g~l~~ 697 (900)
+.-+.+.. -.+++|+.||.+..||+..- .+....+.+. ..+...+...++..++..+.+.++..
T Consensus 193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV 272 (397)
T ss_pred EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence 33344433 35778999999999998643 2333322221 11122233333455666666777888
Q ss_pred EEcCCCCceeeeEe-------ecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCCceeccccccccCC
Q 002615 698 ISVKALPFHTLWLH-------ELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALP 769 (900)
Q Consensus 698 ~~~~~~~g~~~w~~-------~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~ 769 (900)
|+..+ |+-.-+- +...+.+. .. +...+.+..--.++.++.++ -.|..+-..+....-.. .++....-
T Consensus 273 wn~~~--G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~-c~~~~~~f 347 (397)
T KOG4283|consen 273 WNMES--GRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRIN-CAAYRPDF 347 (397)
T ss_pred eeccc--CcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceee-EEeecCch
Confidence 88766 4321110 00011111 11 22223333333468899999 78877644443322111 11112223
Q ss_pred CeEEEEeeCCeEEEEeC
Q 002615 770 SQVLICSRNGSIYSFEQ 786 (900)
Q Consensus 770 ~~l~~g~~dg~l~~~d~ 786 (900)
...+.|..|+.++.|-+
T Consensus 348 q~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 348 EQCFTGDMNGNIYMWSP 364 (397)
T ss_pred hhhhccccCCccccccc
Confidence 46888888888888875
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00044 Score=74.49 Aligned_cols=235 Identities=13% Similarity=0.057 Sum_probs=127.2
Q ss_pred CEEEEEeeCCEEEEEECCCCcEE------EEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEee--ccC-
Q 002615 600 SQVVVGCYKGKIYFLDYLTGDIY------WTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKL--PCG- 670 (900)
Q Consensus 600 ~~i~vg~~dg~l~~~d~~tG~~~------w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~--~~~- 670 (900)
..++++..+|.+..+|...-... .....+..........+..-.|+..+.|.++.+||.++++++-.. -.+
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~ 144 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHT 144 (720)
T ss_pred ceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccc
Confidence 46888889999999986543322 111223333333334444566788899999999999998876542 111
Q ss_pred CccccCceeec-cCCEEEEEeCCCcEEEEEcCCCCceee--------eEeec-----------------CCcce-e--ee
Q 002615 671 GSIFGSPAIDE-VHDVLYVASTSGRLTAISVKALPFHTL--------WLHEL-----------------EVPAF-A--SL 721 (900)
Q Consensus 671 ~~~~~~~~~~~-~~~~l~v~t~~g~l~~~~~~~~~g~~~--------w~~~~-----------------~~~~~-~--s~ 721 (900)
+.+- +.|+.. +...+..|..||.+..||..-..-... -.++. ....+ + +.
T Consensus 145 ~Svk-S~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTv 223 (720)
T KOG0321|consen 145 GSVK-SECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTV 223 (720)
T ss_pred cccc-hhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEE
Confidence 2232 333333 234556678899999998653110000 00000 01111 1 23
Q ss_pred eeeeCCCEEEEEee-cCcEEEEC-CCCCEEeeec------CCCc---eecccccccc-CCCeEEEEeeCCeEEEEeCCCC
Q 002615 722 CITSANRHVICCLV-DGHVVALD-SSGSIIWRCR------TGGP---IFAGPCTSFA-LPSQVLICSRNGSIYSFEQESG 789 (900)
Q Consensus 722 ~~~~~~~~i~~~~~-~g~v~~~d-~~G~~~w~~~------~~~~---~~~~~~~~~~-~~~~l~~g~~dg~l~~~d~~tG 789 (900)
.+..++..+..++. |+.+-+|| ......++.. .... .....+...+ .+..+++.+.|+.||+||..+-
T Consensus 224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence 44556677776665 89999999 4333222211 0000 0011111222 2467999999999999997653
Q ss_pred ceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecC
Q 002615 790 NLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 842 (900)
Q Consensus 790 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~ 842 (900)
..-=.....+....+.++. .....++..+..|+.++..|+|..++-
T Consensus 304 s~sP~~~~sg~~~~sf~vk-------s~lSpd~~~l~SgSsd~~ayiw~vs~~ 349 (720)
T KOG0321|consen 304 SISPVAEFSGKLNSSFYVK-------SELSPDDCSLLSGSSDEQAYIWVVSSP 349 (720)
T ss_pred CcCchhhccCcccceeeee-------eecCCCCceEeccCCCcceeeeeecCc
Confidence 3211111111111111111 112345889999999999999988743
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00022 Score=72.37 Aligned_cols=191 Identities=14% Similarity=0.101 Sum_probs=129.0
Q ss_pred CceEEEEecCCCeEEEEECC-----CCcEEEEEecCCceeeceeEecCCCEEEE-EeeC--CEEEEEECCCCcEEEEEec
Q 002615 556 SDIYLFVGSHSHKFICADAK-----RSSVLWEIKLEGRIECSAAVLADFSQVVV-GCYK--GKIYFLDYLTGDIYWTFQT 627 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~-----tG~~~w~~~~~~~~~~~~~~~~~~~~i~v-g~~d--g~l~~~d~~tG~~~w~~~~ 627 (900)
.++.|..+..+|.+..+..+ +-+.+|....++-. ..--.+....|++ |... ..+-.||++.++.+|+-+.
T Consensus 114 ~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~--~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKN 191 (412)
T KOG3881|consen 114 ADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLY--DVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKN 191 (412)
T ss_pred cCCEEEEEecCCcEEEEeccCCccccccceeeecCCcee--eeccCCCCCceEecCchhcccceeeeecccceeeeeccC
Confidence 57888888888999999877 44455543332211 1111222223444 6666 6789999999999998543
Q ss_pred CC--------cee-eeeeEeCC--CCEEEEecCCCeEEEEECCCC-eEEEeeccCCccccCceeeccCCEEEEEeCCCcE
Q 002615 628 CG--------EVK-CQPVVDAP--RQLIWCGSHDHNLYALDFRNY-RCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRL 695 (900)
Q Consensus 628 ~~--------~~~-~~~~~~~~--~~~i~~gs~dg~l~~~d~~~g-~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l 695 (900)
-. ++. +...|.+. ...+.+++.-+.+..||++.+ +++-++.......++....+.++.||+|+..|.+
T Consensus 192 vpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l 271 (412)
T KOG3881|consen 192 VPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQL 271 (412)
T ss_pred CCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchh
Confidence 21 111 12223333 456788888999999999876 5777788877777888888878999999999999
Q ss_pred EEEEcCCCCceeeeE-eecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEe
Q 002615 696 TAISVKALPFHTLWL-HELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIW 750 (900)
Q Consensus 696 ~~~~~~~~~g~~~w~-~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w 750 (900)
..||.+. ++..-. ++.-.....+.++.+....+..++-|..+.++| .+-+++.
T Consensus 272 ~~FD~r~--~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 272 AKFDLRG--GKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred heecccC--ceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence 9999987 665544 222233335556665566788888899999999 6645543
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00079 Score=75.09 Aligned_cols=261 Identities=11% Similarity=0.049 Sum_probs=127.5
Q ss_pred eEEEEECCCC-cEEEEEecCCceeeceeEec-CCCEEEEEeeCCEEEEEECCCCcE--EEEEec----CCceeeeeeEeC
Q 002615 568 KFICADAKRS-SVLWEIKLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDI--YWTFQT----CGEVKCQPVVDA 639 (900)
Q Consensus 568 ~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~~-~~~~i~vg~~dg~l~~~d~~tG~~--~w~~~~----~~~~~~~~~~~~ 639 (900)
.++.||.++- +..-.+.....+. +..+.+ +...++.|+++|.|.+||...+.. .+.... +.......+...
T Consensus 223 ~~~vW~~~~p~~Pe~~~~~~s~v~-~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLESPSEVT-CLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred eEEEEecCCCCCceEEEecCCcee-EEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 5777876653 3322333343332 334444 345788899999999999887765 443322 112222222222
Q ss_pred C--CCEEEEecCCCeEEEEECCCCeE-EEe------ecc----CC--ccccCceeeccCCEEEEEeCCCcEEEEEcCCCC
Q 002615 640 P--RQLIWCGSHDHNLYALDFRNYRC-VYK------LPC----GG--SIFGSPAIDEVHDVLYVASTSGRLTAISVKALP 704 (900)
Q Consensus 640 ~--~~~i~~gs~dg~l~~~d~~~g~~-~w~------~~~----~~--~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~ 704 (900)
. +..++.++.||.|..|+.+.-.. .-. .+. .. ...+--....+....++||..|.|+.-+-+..+
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 2 23488888899999997654221 000 000 00 001111112234779999999999875433211
Q ss_pred cee------eeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-C-CCCEE-eeecCCCceeccccccccCCCeEEEE
Q 002615 705 FHT------LWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-S-SGSII-WRCRTGGPIFAGPCTSFALPSQVLIC 775 (900)
Q Consensus 705 g~~------~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~-~G~~~-w~~~~~~~~~~~~~~~~~~~~~l~~g 775 (900)
-.. +-.+..+.....+....+-...++..+.|.++..|. . .-.++ |.......++... .+......++++
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~va-WSptrpavF~~~ 460 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVA-WSPTRPAVFATV 460 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeE-EcCcCceEEEEE
Confidence 111 111111111112222222223334433466777776 3 33333 2222111121111 111122345666
Q ss_pred eeCCeEEEEeCCCCce--eeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeec
Q 002615 776 SRNGSIYSFEQESGNL--LWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 841 (900)
Q Consensus 776 ~~dg~l~~~d~~tG~~--~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~ 841 (900)
..+|.|+.||...... .-+.+....+..- ......+..+++|...|.+++|+...
T Consensus 461 d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~-----------~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 461 DGDGNLDIWDLLQDDEEPVLSQKVCSPALTR-----------VRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cCCCceehhhhhccccCCcccccccccccce-----------eecCCCCcEEEEecCCCcEEEEEcCc
Confidence 7799999999754321 2222222111111 11223378999999999999998863
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.017 Score=64.24 Aligned_cols=263 Identities=14% Similarity=0.128 Sum_probs=153.1
Q ss_pred ecCCCeEEEEECCC-CcEEEEEecCCceeeceeEecCCCEEEEEee-CCEEEEEECCCCcEEEEEecCCceeeeeeEeCC
Q 002615 563 GSHSHKFICADAKR-SSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAP 640 (900)
Q Consensus 563 gs~~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~-dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~ 640 (900)
+..++.+..||..+ +........+........+.+++..+++++. ++.+..|+..+++....+..+........+.+.
T Consensus 130 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 209 (466)
T COG2319 130 SSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPD 209 (466)
T ss_pred CCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCC
Confidence 34488899999887 5655555555544446778888777777764 999999999888888777654444444444444
Q ss_pred CCEEEEe-cCCCeEEEEECCCCeEEE-eeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCcee-eeEeecCCcc
Q 002615 641 RQLIWCG-SHDHNLYALDFRNYRCVY-KLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHT-LWLHELEVPA 717 (900)
Q Consensus 641 ~~~i~~g-s~dg~l~~~d~~~g~~~w-~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~-~w~~~~~~~~ 717 (900)
+..+..+ +.|+.+..||..++.... .+....... ...+...+..+..++.++.+..|+... ... +.....+...
T Consensus 210 ~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~~~~ 286 (466)
T COG2319 210 GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRS--SSSLLRTLSGHSSS 286 (466)
T ss_pred cceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecC--CCcEEEEEecCCcc
Confidence 4434444 889999999988777776 344333221 114444345677788899999999875 332 3333222222
Q ss_pred eeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeec--CCCc-eeccccccccCCCeEEEE-eeCCeEEEEeCCCCcee
Q 002615 718 FASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCR--TGGP-IFAGPCTSFALPSQVLIC-SRNGSIYSFEQESGNLL 792 (900)
Q Consensus 718 ~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~--~~~~-~~~~~~~~~~~~~~l~~g-~~dg~l~~~d~~tG~~~ 792 (900)
+....+.+....+..++.++.+..++ .++....... .... +..... ......+..+ ..++.+..|+.......
T Consensus 287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 364 (466)
T COG2319 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF--SPDGSLLVSGGSDDGTIRLWDLRTGKPL 364 (466)
T ss_pred EEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE--CCCCCEEEEeecCCCcEEeeecCCCcee
Confidence 33334444566777777777778888 5555544333 1111 211111 1111345555 56777888887766533
Q ss_pred eEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecC
Q 002615 793 WEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 842 (900)
Q Consensus 793 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~ 842 (900)
.............+ .. .......+..++.+.+|+....
T Consensus 365 ~~~~~~~~~~~~~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~ 402 (466)
T COG2319 365 KTLEGHSNVLSVSF-----------SP-DGRVVSSGSTDGTVRLWDLSTG 402 (466)
T ss_pred EEecCCceEEEEEE-----------CC-CCCEEEEecCCCceEEEecccC
Confidence 32222222111100 01 1122224678889999988754
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0048 Score=69.10 Aligned_cols=219 Identities=13% Similarity=0.076 Sum_probs=122.0
Q ss_pred eEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeC---CEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEE
Q 002615 568 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK---GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI 644 (900)
Q Consensus 568 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~d---g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i 644 (900)
.|+..|.+.+... .+........++.+++|+..|+..+.+ ..||.+|..+|+........ .....+.+++++..|
T Consensus 199 ~l~i~d~dG~~~~-~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~-g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNEQ-MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP-GINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCce-EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC-CCcCCeeECCCCCEE
Confidence 5666776544332 222222334578899999888776543 26999999988764332222 233456777777766
Q ss_pred EE-ecCCC--eEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeC-C--CcEEEEEcCCCCceeeeEeecCCcce
Q 002615 645 WC-GSHDH--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST-S--GRLTAISVKALPFHTLWLHELEVPAF 718 (900)
Q Consensus 645 ~~-gs~dg--~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~--g~l~~~~~~~~~g~~~w~~~~~~~~~ 718 (900)
++ .+.+| .||.+|..+++... ...+......|...+++..|++.+. + ..++.+|.++ |+... ........
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~--g~~~~-Lt~~g~~~ 352 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS--GKVSR-LTFEGEQN 352 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC--CCEEE-EecCCCCC
Confidence 54 45555 49999998887543 2223334556777776677766654 2 3588888776 54321 11122222
Q ss_pred eeeeeeeCCCEEEEEeecC---cEEEEC-CCCCEEeeecCCCceeccccccccCCCeEEEEeeC-C--eEEEEeCCCCce
Q 002615 719 ASLCITSANRHVICCLVDG---HVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRN-G--SIYSFEQESGNL 791 (900)
Q Consensus 719 ~s~~~~~~~~~i~~~~~~g---~v~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~d-g--~l~~~d~~tG~~ 791 (900)
..+.+.++++.++..+..+ .|+.+| .+|+.. ...... .-..|.... .+..|++.+.+ | .++.++. +|..
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~-~d~~ps~sp-dG~~I~~~~~~~g~~~l~~~~~-~G~~ 428 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR-LDESPSVAP-NGTMVIYSTTYQGKQVLAAVSI-DGRF 428 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCC-CCCCceECC-CCCEEEEEEecCCceEEEEEEC-CCCc
Confidence 3456667777777765432 467788 666542 122111 111222222 23455555433 3 3788885 5665
Q ss_pred eeEEe
Q 002615 792 LWEYS 796 (900)
Q Consensus 792 ~w~~~ 796 (900)
...+.
T Consensus 429 ~~~l~ 433 (448)
T PRK04792 429 KARLP 433 (448)
T ss_pred eEECc
Confidence 55443
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0012 Score=75.78 Aligned_cols=241 Identities=12% Similarity=0.113 Sum_probs=144.6
Q ss_pred eceeEecCCCEEEEEeeCCEEEEEECCCCc--------------EEEE----EecCCceeeeeeEeCCCCEEEEecCCCe
Q 002615 591 CSAAVLADFSQVVVGCYKGKIYFLDYLTGD--------------IYWT----FQTCGEVKCQPVVDAPRQLIWCGSHDHN 652 (900)
Q Consensus 591 ~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~--------------~~w~----~~~~~~~~~~~~~~~~~~~i~~gs~dg~ 652 (900)
.+.-+++||.++++|+.|..+..|....+- ..|+ +..+..-..-..+++++..+..++.|+.
T Consensus 73 ~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~Dns 152 (942)
T KOG0973|consen 73 NCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNS 152 (942)
T ss_pred eEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccce
Confidence 345588999999999999998888865211 1232 1222222333445666777888999999
Q ss_pred EEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEee------cCCcceeeeeeeeC
Q 002615 653 LYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHE------LEVPAFASLCITSA 726 (900)
Q Consensus 653 l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~------~~~~~~~s~~~~~~ 726 (900)
+..||.++.+.+-++..+....-...+++.+..+..-+.|+.+..|+..+ -....... .....|.-+..+++
T Consensus 153 Viiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d--w~i~k~It~pf~~~~~~T~f~RlSWSPD 230 (942)
T KOG0973|consen 153 VIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD--WGIEKSITKPFEESPLTTFFLRLSWSPD 230 (942)
T ss_pred EEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccc--ceeeEeeccchhhCCCcceeeecccCCC
Confidence 99999999988888777766666677788778888888999999999554 22222221 11223344455666
Q ss_pred CCEEEEEe-ecCcEE---EECCCCCEEeeecC-----CCce---eccccccccCCC------------eEEEEeeCCeEE
Q 002615 727 NRHVICCL-VDGHVV---ALDSSGSIIWRCRT-----GGPI---FAGPCTSFALPS------------QVLICSRNGSIY 782 (900)
Q Consensus 727 ~~~i~~~~-~~g~v~---~~d~~G~~~w~~~~-----~~~~---~~~~~~~~~~~~------------~l~~g~~dg~l~ 782 (900)
+.++.+.. .++... .++. | -|+... .+++ ...|.+.....+ -+.+|+.|+.|.
T Consensus 231 G~~las~nA~n~~~~~~~IieR-~--tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlS 307 (942)
T KOG0973|consen 231 GHHLASPNAVNGGKSTIAIIER-G--TWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLS 307 (942)
T ss_pred cCeecchhhccCCcceeEEEec-C--CceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEE
Confidence 66665542 233322 2322 1 244321 1111 111111111111 355678899999
Q ss_pred EEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecCcccc
Q 002615 783 SFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGK 846 (900)
Q Consensus 783 ~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~~~ 846 (900)
+|+...-+++... ..+....+.+ .+..++|-.+++++.||.|..+..+....|.
T Consensus 308 VW~T~~~RPl~vi---~~lf~~SI~D-------msWspdG~~LfacS~DGtV~~i~Fee~ElG~ 361 (942)
T KOG0973|consen 308 VWNTALPRPLFVI---HNLFNKSIVD-------MSWSPDGFSLFACSLDGTVALIHFEEKELGV 361 (942)
T ss_pred EEecCCCCchhhh---hhhhcCceee-------eeEcCCCCeEEEEecCCeEEEEEcchHHhCc
Confidence 9986555554321 1122222222 2244558899999999999999988765543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0016 Score=72.69 Aligned_cols=180 Identities=17% Similarity=0.157 Sum_probs=108.0
Q ss_pred CeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEE-EeeCC--EEEEEECCCCcEEEEEecCCceeeeeeEeCCCCE
Q 002615 567 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVV-GCYKG--KIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL 643 (900)
Q Consensus 567 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~v-g~~dg--~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 643 (900)
..|+.+|..+|+..-.....+ ....+.+++++..|++ .+.+| .||.+|..++... +...+......+.+.+++..
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~wSpDG~~ 297 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKG-SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLR-RLTQSSGIDTEPFFSPDGRS 297 (427)
T ss_pred cEEEEEECCCCCEEEeecCCC-CccceEECCCCCEEEEEEccCCCceEEEEECCCCCcE-ECCCCCCCCcCeEEcCCCCE
Confidence 469999999998653332332 2347889999888765 45555 5888897766543 33223334456778877777
Q ss_pred EEEecCC---CeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCC---cEEEEEcCCCCceeeeEeecCCcc
Q 002615 644 IWCGSHD---HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSG---RLTAISVKALPFHTLWLHELEVPA 717 (900)
Q Consensus 644 i~~gs~d---g~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g---~l~~~~~~~~~g~~~w~~~~~~~~ 717 (900)
|++.+.. -.||.++..+++..... ..+.....+.+++++..|++.+..+ .|+.+|..+ ++...... . ..
T Consensus 298 l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~--g~~~~lt~-~-~~ 372 (427)
T PRK02889 298 IYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT--GQVTALTD-T-TR 372 (427)
T ss_pred EEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCC--CCeEEccC-C-CC
Confidence 7665532 25888887776543222 2333344577777677777666544 588899876 55433221 1 11
Q ss_pred eeeeeeeeCCCEEEEEeecC---cEEEECCCCCEEeeec
Q 002615 718 FASLCITSANRHVICCLVDG---HVVALDSSGSIIWRCR 753 (900)
Q Consensus 718 ~~s~~~~~~~~~i~~~~~~g---~v~~~d~~G~~~w~~~ 753 (900)
...+.+.+++..++..+.++ .+++++.+|.......
T Consensus 373 ~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~ 411 (427)
T PRK02889 373 DESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLS 411 (427)
T ss_pred ccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEee
Confidence 24556667777777665443 2555555565554443
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0015 Score=73.04 Aligned_cols=179 Identities=12% Similarity=0.142 Sum_probs=108.2
Q ss_pred CeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEE-eeCC--EEEEEECCCCcEEEEEecCCceeeeeeEeCCCCE
Q 002615 567 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVG-CYKG--KIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL 643 (900)
Q Consensus 567 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg-~~dg--~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 643 (900)
..|+.+|..+|+........+ ....+.+++++..|++. +.+| .||.+|..+|+..- ..........+.+.+++..
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g-~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~~~~spDG~~ 305 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRG-INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHFGIDTEPTWAPDGKS 305 (433)
T ss_pred cEEEEEECCCCCEEEeccCCC-CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-CccCCCCccceEECCCCCE
Confidence 469999999888654333332 33467889998877654 4444 69999999887643 2223334456777777777
Q ss_pred EEEecC-CC--eEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCC---cEEEEEcCCCCceeeeEeecCCcc
Q 002615 644 IWCGSH-DH--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSG---RLTAISVKALPFHTLWLHELEVPA 717 (900)
Q Consensus 644 i~~gs~-dg--~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g---~l~~~~~~~~~g~~~w~~~~~~~~ 717 (900)
|++.+. +| .+|.+|..+++..... ..+.....+.++++++.|++.+.++ .++.+|+.+ |+.. ..... ..
T Consensus 306 l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~--g~~~-~Lt~~-~~ 380 (433)
T PRK04922 306 IYFTSDRGGRPQIYRVAASGGSAERLT-FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST--GSVR-TLTPG-SL 380 (433)
T ss_pred EEEEECCCCCceEEEEECCCCCeEEee-cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC--CCeE-ECCCC-CC
Confidence 776653 33 4999998887654322 2333444677777777887765433 588899876 5433 22211 12
Q ss_pred eeeeeeeeCCCEEEEEeec---CcEEEECCCCCEEeee
Q 002615 718 FASLCITSANRHVICCLVD---GHVVALDSSGSIIWRC 752 (900)
Q Consensus 718 ~~s~~~~~~~~~i~~~~~~---g~v~~~d~~G~~~w~~ 752 (900)
...+.+.+++..++..+.+ +.|+.++.+|......
T Consensus 381 ~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l 418 (433)
T PRK04922 381 DESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRL 418 (433)
T ss_pred CCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEc
Confidence 2345566666666655442 2466666445444433
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0022 Score=63.83 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=73.2
Q ss_pred CEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeC-CCCEEEEecCCCeEEEEECCCCeEEEeeccC---Ccccc
Q 002615 600 SQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDA-PRQLIWCGSHDHNLYALDFRNYRCVYKLPCG---GSIFG 675 (900)
Q Consensus 600 ~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~-~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~---~~~~~ 675 (900)
-++++|.+-|.|+.+|..+++....+..++......-+.+ ..++|+++|.|..|..||++++.++-.+..- ..-.-
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVL 185 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVL 185 (385)
T ss_pred eeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEE
Confidence 4677888999999999999988777665543322222222 3468899999999999999999998776431 11222
Q ss_pred CceeeccCCEEEEEeCCCcEEEEEcCC
Q 002615 676 SPAIDEVHDVLYVASTSGRLTAISVKA 702 (900)
Q Consensus 676 ~~~~~~~~~~l~v~t~~g~l~~~~~~~ 702 (900)
+.-++..++++..+..|..|..|+++.
T Consensus 186 SvD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 186 SVDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred EEEEcCCCCeeeccCCcceEEEEecCh
Confidence 333444567788888889999998774
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.1e-05 Score=79.03 Aligned_cols=193 Identities=15% Similarity=0.090 Sum_probs=136.6
Q ss_pred CceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeee
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 635 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 635 (900)
.+..+.+|...|.|.++|-.|+++..++.+...+.. +.+.-+.. .++......+|+|| ..|..+........+.-.
T Consensus 140 nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~D-v~~LHneq-~~AVAQK~y~yvYD-~~GtElHClk~~~~v~rL- 215 (545)
T KOG1272|consen 140 NGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRD-VTFLHNEQ-FFAVAQKKYVYVYD-NNGTELHCLKRHIRVARL- 215 (545)
T ss_pred CccEEEecCCccceeeeecccceeeeeeehhhhhhh-hhhhcchH-HHHhhhhceEEEec-CCCcEEeehhhcCchhhh-
Confidence 566788899999999999999999988877665542 33333333 44445567789999 778777665554443322
Q ss_pred eEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCC
Q 002615 636 VVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV 715 (900)
Q Consensus 636 ~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~ 715 (900)
-+-+..-.+..++..|.+...|..+|+.+-.+..+..-.......+-+..+-+|..+|.+..|+++. -+++-+.-++.
T Consensus 216 eFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s--kePLvKiLcH~ 293 (545)
T KOG1272|consen 216 EFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS--KEPLVKILCHR 293 (545)
T ss_pred cccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC--cchHHHHHhcC
Confidence 1222233455667778899999999999877776554444444555456788899999999999887 67777666776
Q ss_pred cceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecC
Q 002615 716 PAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT 754 (900)
Q Consensus 716 ~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~ 754 (900)
...++.++...+.++...+.|..+-+|| .+-..+.++..
T Consensus 294 g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 294 GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred CCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence 6668888888888888888899999999 65444444433
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0002 Score=74.47 Aligned_cols=184 Identities=11% Similarity=0.073 Sum_probs=119.1
Q ss_pred ceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecC-Cceeeee
Q 002615 557 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC-GEVKCQP 635 (900)
Q Consensus 557 ~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~-~~~~~~~ 635 (900)
..++..|..++.|..||.+...+....+-+......+.+...+.+|..++..|.|......|+...-.|..+ +...-..
T Consensus 91 S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll 170 (673)
T KOG4378|consen 91 SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLL 170 (673)
T ss_pred ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEe
Confidence 356777888999999999844333333333333334444445568888999999999999998776666555 2222122
Q ss_pred eEeCC-CCEEEEecCCCeEEEEECCCCeEEEeec-cCCccccCceeeccCCEEEE-EeCCCcEEEEEcCCCCceeeeEee
Q 002615 636 VVDAP-RQLIWCGSHDHNLYALDFRNYRCVYKLP-CGGSIFGSPAIDEVHDVLYV-ASTSGRLTAISVKALPFHTLWLHE 712 (900)
Q Consensus 636 ~~~~~-~~~i~~gs~dg~l~~~d~~~g~~~w~~~-~~~~~~~~~~~~~~~~~l~v-~t~~g~l~~~~~~~~~g~~~w~~~ 712 (900)
-+... +-.+.+++++|.+..||.....++..+. .+.......|+.+.+..|++ -..|..|+.||... -+..-+..
T Consensus 171 ~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s--~~s~~~l~ 248 (673)
T KOG4378|consen 171 RYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS--QASTDRLT 248 (673)
T ss_pred ecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc--ccccceee
Confidence 22332 3456678899999999988777665442 23444445555554444443 45788999999764 22222333
Q ss_pred cCCcceeeeeeeeCCCEEEEEeecCcEEEEC
Q 002615 713 LEVPAFASLCITSANRHVICCLVDGHVVALD 743 (900)
Q Consensus 713 ~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d 743 (900)
...| +++.++...+-++.+|+..|.|+.||
T Consensus 249 y~~P-lstvaf~~~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 249 YSHP-LSTVAFSECGTYLCAGNSKGELIAYD 278 (673)
T ss_pred ecCC-cceeeecCCceEEEeecCCceEEEEe
Confidence 3333 36677777777888889999999999
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0012 Score=64.94 Aligned_cols=263 Identities=13% Similarity=0.051 Sum_probs=144.7
Q ss_pred EecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEEC-------C----C---CcE------
Q 002615 562 VGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDY-------L----T---GDI------ 621 (900)
Q Consensus 562 igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~-------~----t---G~~------ 621 (900)
.+|.|+.-..|...+|+++-++..+..-..++.+.+.+..+..++.|+.-..|.. . + ++.
T Consensus 165 tASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sD 244 (481)
T KOG0300|consen 165 TASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSD 244 (481)
T ss_pred ecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccc
Confidence 3456677777777888888777766555556677777666777777765544430 0 0 000
Q ss_pred --------------------EEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeec
Q 002615 622 --------------------YWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDE 681 (900)
Q Consensus 622 --------------------~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~ 681 (900)
+-.+..+..+....-+-..+..++++++|.+...||.++|+++.....+..-....+..+
T Consensus 245 e~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp 324 (481)
T KOG0300|consen 245 EHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP 324 (481)
T ss_pred ccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC
Confidence 000111111111111222456788899999999999999999987766554444444444
Q ss_pred cCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CC-CCEEeeecCCCcee
Q 002615 682 VHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SS-GSIIWRCRTGGPIF 759 (900)
Q Consensus 682 ~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~-G~~~w~~~~~~~~~ 759 (900)
....++..+.+-....||.... -.-+--+..+.....+. ....+++++.|+.|..+-+|| .+ -..+-++.+..++-
T Consensus 325 tQrLVvTsSrDtTFRLWDFRea-I~sV~VFQGHtdtVTS~-vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~N 402 (481)
T KOG0300|consen 325 TQRLVVTSSRDTTFRLWDFREA-IQSVAVFQGHTDTVTSV-VFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPAN 402 (481)
T ss_pred cceEEEEeccCceeEeccchhh-cceeeeecccccceeEE-EEecCCceeecCCCceEEEeeeccccCcceeeecCCccc
Confidence 3344555666777888886641 11111222233332333 334567899999999999998 43 34555555544322
Q ss_pred ccccccccCCC-eEEEEeeCCeEEEEeCCCCceeeEEe-----cCCceec-ccccccccccccccccCCCeEEEEEcCCC
Q 002615 760 AGPCTSFALPS-QVLICSRNGSIYSFEQESGNLLWEYS-----VGDPITA-SAYIDEHLQLKLESCLSIDRLVCICTSSG 832 (900)
Q Consensus 760 ~~~~~~~~~~~-~l~~g~~dg~l~~~d~~tG~~~w~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~g~~~G 832 (900)
-. ....++ .|.+.-.+..+..||.. |.-+-.++ .+...+. .++..+. + -..++.++-|.
T Consensus 403 Rv---avs~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eeh-------p---~cnLftcGFDR 468 (481)
T KOG0300|consen 403 RV---AVSKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEH-------P---ACNLFTCGFDR 468 (481)
T ss_pred ee---EeecCCceEEeccCCceEEEEecC-CCccccCCcccccccceeeeeeeccccC-------c---ccccccccccc
Confidence 11 122233 34444556678888864 54433222 1112222 2222221 1 13466666777
Q ss_pred cEEEEEee
Q 002615 833 SIHILRVN 840 (900)
Q Consensus 833 ~v~~~d~~ 840 (900)
.+.-|+.+
T Consensus 469 ~v~gW~in 476 (481)
T KOG0300|consen 469 MVAGWKIN 476 (481)
T ss_pred eeeeeEec
Confidence 77777665
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.007 Score=67.89 Aligned_cols=211 Identities=13% Similarity=0.104 Sum_probs=119.2
Q ss_pred eEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeC---CEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEE
Q 002615 568 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK---GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI 644 (900)
Q Consensus 568 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~d---g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i 644 (900)
.|+..|.+.++.. ..........++.++++++.|+..+++ ..||.+|..+|+........+ ....+.+.+++..|
T Consensus 180 ~l~~~d~~g~~~~-~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g-~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGARAV-TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEG-LNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCCce-EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCC-CcCCeEECCCCCEE
Confidence 4777787655432 232233334578899999888665543 369999999997654322222 23456777777666
Q ss_pred EE-ecCCC--eEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCC---CcEEEEEcCCCCceeeeEeecCCcce
Q 002615 645 WC-GSHDH--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS---GRLTAISVKALPFHTLWLHELEVPAF 718 (900)
Q Consensus 645 ~~-gs~dg--~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~---g~l~~~~~~~~~g~~~w~~~~~~~~~ 718 (900)
++ .+.+| .||.+|.++++... ..........|...+++..|++.+.. ..++.+++.+ |+.. +........
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~--g~~~-~lt~~~~~~ 333 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG--GRAE-RVTFVGNYN 333 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC--CCEE-EeecCCCCc
Confidence 54 44444 69999999887543 22233345566777667777776642 3588888776 5432 111222222
Q ss_pred eeeeeeeCCCEEEEEeecC---cEEEEC-CCCCEEeeecCCCceeccccccccCCCeEEEEeeC---CeEEEEeCC
Q 002615 719 ASLCITSANRHVICCLVDG---HVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRN---GSIYSFEQE 787 (900)
Q Consensus 719 ~s~~~~~~~~~i~~~~~~g---~v~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~d---g~l~~~d~~ 787 (900)
..+.+.++++.++.....+ .|+.+| .+|+... ...... -..+.+.. .+..+++.+.+ ..|+.++..
T Consensus 334 ~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~~~-~~~p~~sp-dg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 334 ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDTSL-DESPSVAP-NGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred cceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCCCC-CCCceECC-CCCEEEEEEecCCceEEEEEECC
Confidence 3445666777777665432 477888 6665432 221111 11222222 23455555443 347777764
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0034 Score=61.14 Aligned_cols=226 Identities=16% Similarity=0.192 Sum_probs=127.1
Q ss_pred eEecCCCEEEEE-eeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEE-Eeecc--
Q 002615 594 AVLADFSQVVVG-CYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCV-YKLPC-- 669 (900)
Q Consensus 594 ~~~~~~~~i~vg-~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~-w~~~~-- 669 (900)
...+|| .||.+ ...|.+=.+|+.||+.. ++..+....-.-++...++..|+......|..+|.++++.. |....
T Consensus 68 apapdG-~VWft~qg~gaiGhLdP~tGev~-~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~ 145 (353)
T COG4257 68 APAPDG-AVWFTAQGTGAIGHLDPATGEVE-TYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEH 145 (353)
T ss_pred ccCCCC-ceEEecCccccceecCCCCCceE-EEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeeccccc
Confidence 444554 45554 44567889999999886 45554433322334444567888765558999999887653 44332
Q ss_pred CCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCce-eeeEeecCCcceeeeeeeeCCCEEEEEee-cCcEEEEC-CCC
Q 002615 670 GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFH-TLWLHELEVPAFASLCITSANRHVICCLV-DGHVVALD-SSG 746 (900)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~-~~w~~~~~~~~~~s~~~~~~~~~i~~~~~-~g~v~~~d-~~G 746 (900)
.......+++++ .++||+....|.--.+|+.. +. .+|....+... ..++. .-++.+|..+. +..|..+| .+|
T Consensus 146 a~~nlet~vfD~-~G~lWFt~q~G~yGrLdPa~--~~i~vfpaPqG~gp-yGi~a-tpdGsvwyaslagnaiaridp~~~ 220 (353)
T COG4257 146 ADANLETAVFDP-WGNLWFTGQIGAYGRLDPAR--NVISVFPAPQGGGP-YGICA-TPDGSVWYASLAGNAIARIDPFAG 220 (353)
T ss_pred CCCcccceeeCC-CccEEEeeccccceecCccc--CceeeeccCCCCCC-cceEE-CCCCcEEEEeccccceEEcccccC
Confidence 223345566776 68888888777666777665 22 22322211111 22233 34566777654 55677888 666
Q ss_pred CEEeeecCCCc-eeccccccccCCCeEEEEee-CCeEEEEeCCCCceee-EEecCCc--eecccccccccccccccccCC
Q 002615 747 SIIWRCRTGGP-IFAGPCTSFALPSQVLICSR-NGSIYSFEQESGNLLW-EYSVGDP--ITASAYIDEHLQLKLESCLSI 821 (900)
Q Consensus 747 ~~~w~~~~~~~-~~~~~~~~~~~~~~l~~g~~-dg~l~~~d~~tG~~~w-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 821 (900)
... .+..... ...+-.+..+.-+.+|+.+. .|.++.||+.+-. | ++++++. --.+..+++
T Consensus 221 ~ae-v~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--W~eypLPgs~arpys~rVD~------------ 285 (353)
T COG4257 221 HAE-VVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--WIEYPLPGSKARPYSMRVDR------------ 285 (353)
T ss_pred Ccc-eecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc--ceeeeCCCCCCCcceeeecc------------
Confidence 221 1111111 11111223344678998864 5789999998654 6 4454432 222233333
Q ss_pred CeEEEE-EcCCCcEEEEEeec
Q 002615 822 DRLVCI-CTSSGSIHILRVNL 841 (900)
Q Consensus 822 ~~~l~~-g~~~G~v~~~d~~~ 841 (900)
.+.+|. -...|.|..||..+
T Consensus 286 ~grVW~sea~agai~rfdpet 306 (353)
T COG4257 286 HGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred CCcEEeeccccCceeecCccc
Confidence 566776 34456677777763
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.003 Score=70.44 Aligned_cols=180 Identities=12% Similarity=0.089 Sum_probs=109.6
Q ss_pred CCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEE-eeCC--EEEEEECCCCcEEEEEecCCceeeeeeEeCCCC
Q 002615 566 SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVG-CYKG--KIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQ 642 (900)
Q Consensus 566 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg-~~dg--~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~ 642 (900)
+..|+.+|..+|+........+. ...+.+++|+..|++. +.+| .||.+|.++|+..-.. .+......+.+.+++.
T Consensus 222 ~~~i~i~dl~~G~~~~l~~~~~~-~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~ 299 (429)
T PRK03629 222 RSALVIQTLANGAVRQVASFPRH-NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQ 299 (429)
T ss_pred CcEEEEEECCCCCeEEccCCCCC-cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCC
Confidence 34699999998876543333332 3467899999887765 3344 5999999988765332 2233445677888777
Q ss_pred EEEEecCCC---eEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCC---CcEEEEEcCCCCceeeeEeecCCc
Q 002615 643 LIWCGSHDH---NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS---GRLTAISVKALPFHTLWLHELEVP 716 (900)
Q Consensus 643 ~i~~gs~dg---~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~---g~l~~~~~~~~~g~~~w~~~~~~~ 716 (900)
.|++.+.++ .||.+|..+|+.... ...+.....+.+.+++..|++.+.+ ..++.+|+++ |+.. ..... .
T Consensus 300 ~I~f~s~~~g~~~Iy~~d~~~g~~~~l-t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~--g~~~-~Lt~~-~ 374 (429)
T PRK03629 300 NLAYTSDQAGRPQVYKVNINGGAPQRI-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT--GGVQ-VLTDT-F 374 (429)
T ss_pred EEEEEeCCCCCceEEEEECCCCCeEEe-ecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC--CCeE-EeCCC-C
Confidence 776665432 689999888765432 2233334456677766777665433 3578888876 5432 11111 1
Q ss_pred ceeeeeeeeCCCEEEEEeecCc---EEEECCCCCEEeee
Q 002615 717 AFASLCITSANRHVICCLVDGH---VVALDSSGSIIWRC 752 (900)
Q Consensus 717 ~~~s~~~~~~~~~i~~~~~~g~---v~~~d~~G~~~w~~ 752 (900)
...++.+.+++..++..+.++. ++.++.+|....++
T Consensus 375 ~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l 413 (429)
T PRK03629 375 LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARL 413 (429)
T ss_pred CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEEC
Confidence 1235566777777777776654 44555556554444
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0031 Score=70.66 Aligned_cols=180 Identities=12% Similarity=0.083 Sum_probs=106.1
Q ss_pred CeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEE-EeeCC--EEEEEECCCCcEEEEEecCCceeeeeeEeCCCCE
Q 002615 567 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVV-GCYKG--KIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL 643 (900)
Q Consensus 567 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~v-g~~dg--~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 643 (900)
..|+.+|..+|+........+ ....+.+++++..+++ .+.+| .||.+|..+|+..- ...+......+.+.+++..
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g-~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~~~~~~p~wSpDG~~ 319 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPG-INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR-ITRHRAIDTEPSWHPDGKS 319 (448)
T ss_pred cEEEEEECCCCCeEEecCCCC-CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE-CccCCCCccceEECCCCCE
Confidence 369999999988643322222 2346788999887765 44455 49999998887642 2223334456777777777
Q ss_pred EEEecC-C--CeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCC-C--cEEEEEcCCCCceeeeEeecCCcc
Q 002615 644 IWCGSH-D--HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS-G--RLTAISVKALPFHTLWLHELEVPA 717 (900)
Q Consensus 644 i~~gs~-d--g~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~-g--~l~~~~~~~~~g~~~w~~~~~~~~ 717 (900)
|++.+. + ..+|.+|.++|+..... ..+.....+.+.++++.+++.+.. + .++.+|+++ ++..- .... ..
T Consensus 320 I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~--g~~~~-lt~~-~~ 394 (448)
T PRK04792 320 LIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET--GAMQV-LTST-RL 394 (448)
T ss_pred EEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCC--CCeEE-ccCC-CC
Confidence 766543 2 36999999888754322 233333456677767777776543 2 567788776 54321 1111 11
Q ss_pred eeeeeeeeCCCEEEEEeecC---cEEEECCCCCEEeeec
Q 002615 718 FASLCITSANRHVICCLVDG---HVVALDSSGSIIWRCR 753 (900)
Q Consensus 718 ~~s~~~~~~~~~i~~~~~~g---~v~~~d~~G~~~w~~~ 753 (900)
...+.+.+++..++..+..+ .++.++.+|.......
T Consensus 395 d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~ 433 (448)
T PRK04792 395 DESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLP 433 (448)
T ss_pred CCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 12445666677666554432 2566665565544443
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.89 E-value=4.7e-05 Score=78.57 Aligned_cols=186 Identities=12% Similarity=0.113 Sum_probs=124.0
Q ss_pred eCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcc
Q 002615 638 DAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPA 717 (900)
Q Consensus 638 ~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~ 717 (900)
..++..++.|..-|+|.++|-.++++...+.....+...-.+.. ...+.......+|.||-+ |..+.........
T Consensus 138 trnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHn--eq~~AVAQK~y~yvYD~~---GtElHClk~~~~v 212 (545)
T KOG1272|consen 138 TRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHN--EQFFAVAQKKYVYVYDNN---GTELHCLKRHIRV 212 (545)
T ss_pred cCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcc--hHHHHhhhhceEEEecCC---CcEEeehhhcCch
Confidence 34567788888899999999999999888776555544433433 334444445668888855 6666655443332
Q ss_pred eeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEEe
Q 002615 718 FASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYS 796 (900)
Q Consensus 718 ~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~ 796 (900)
....+.+.-=.+..++..|.+...| ++|+++-.+.++..-....+. .-.+..+-+|..+|.|..|.+.+.+.+-++-
T Consensus 213 -~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~q-NP~NaVih~GhsnGtVSlWSP~skePLvKiL 290 (545)
T KOG1272|consen 213 -ARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQ-NPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL 290 (545)
T ss_pred -hhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhc-CCccceEEEcCCCceEEecCCCCcchHHHHH
Confidence 1222333322455566778888889 999988766654322111100 1134567788889999999999888877666
Q ss_pred cCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeec
Q 002615 797 VGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 841 (900)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~ 841 (900)
.+...+++..++.. +.+++..+.|..+.+||.+.
T Consensus 291 cH~g~V~siAv~~~-----------G~YMaTtG~Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 291 CHRGPVSSIAVDRG-----------GRYMATTGLDRKVKIWDLRN 324 (545)
T ss_pred hcCCCcceEEECCC-----------CcEEeecccccceeEeeecc
Confidence 66666666666553 88888888999999999984
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0013 Score=76.33 Aligned_cols=234 Identities=16% Similarity=0.198 Sum_probs=136.5
Q ss_pred CceEEEEecCCCeEEEEECCC--C---cEEE--EEe-cCCceeeceeEecCCCEEEEEeeCCEEEEEECCC--CcEEEE-
Q 002615 556 SDIYLFVGSHSHKFICADAKR--S---SVLW--EIK-LEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLT--GDIYWT- 624 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~t--G---~~~w--~~~-~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~t--G~~~w~- 624 (900)
.......||.||.|.+||... | ..+- .+. .+.+++ .......++.+.+++.||.+..++..- ++..--
T Consensus 1060 ~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~-~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~ 1138 (1431)
T KOG1240|consen 1060 HTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVE-KVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVAT 1138 (1431)
T ss_pred CCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceE-EEEeccCCCeEEEEcCCCeEEEEEccccccccceee
Confidence 346777889999999999753 1 1111 122 233443 334445667888899999888777544 221110
Q ss_pred ------EecCCceeeeeeEe--CCCCEEEEecCCCeEEEEECCCCeEEEeecc--CCccccCceeeccCCEEEEEeCCCc
Q 002615 625 ------FQTCGEVKCQPVVD--APRQLIWCGSHDHNLYALDFRNYRCVYKLPC--GGSIFGSPAIDEVHDVLYVASTSGR 694 (900)
Q Consensus 625 ------~~~~~~~~~~~~~~--~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~--~~~~~~~~~~~~~~~~l~v~t~~g~ 694 (900)
....+.+...-.+. ...-.++.++..+.+..||.......|+.+. ..+..++.++++....+.+||..|.
T Consensus 1139 ~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~ 1218 (1431)
T KOG1240|consen 1139 QVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQ 1218 (1431)
T ss_pred eeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCce
Confidence 01112222221221 1122566777888999999999999998765 3456677788887778999999999
Q ss_pred EEEEEcCCCCceeeeEeecCCccee-eeeeeeC-CCEEEE-Ee-ecCcEEEEC-CCCCE---EeeecCCCcee--cc---
Q 002615 695 LTAISVKALPFHTLWLHELEVPAFA-SLCITSA-NRHVIC-CL-VDGHVVALD-SSGSI---IWRCRTGGPIF--AG--- 761 (900)
Q Consensus 695 l~~~~~~~~~g~~~w~~~~~~~~~~-s~~~~~~-~~~i~~-~~-~~g~v~~~d-~~G~~---~w~~~~~~~~~--~~--- 761 (900)
+.+||++-..--.-|++....+... ..++... +...++ +. ..+.+..|+ .+|.. +|.- .+.+.+ ..
T Consensus 1219 l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s-~~~p~ls~~~Ps~ 1297 (1431)
T KOG1240|consen 1219 LVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS-DGAPILSYALPSN 1297 (1431)
T ss_pred EEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcC-CCCcchhhhcccc
Confidence 9999988522234566554443321 1122111 123333 33 456788888 66632 3433 111111 00
Q ss_pred ----c-------cccccCCCeEEEEeeCCeEEEEeCCCCce
Q 002615 762 ----P-------CTSFALPSQVLICSRNGSIYSFEQESGNL 791 (900)
Q Consensus 762 ----~-------~~~~~~~~~l~~g~~dg~l~~~d~~tG~~ 791 (900)
| +.....++.++.|+.|+.|..||...-+.
T Consensus 1298 ~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1298 DARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred cCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 1 11234467788999999999999766543
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0012 Score=64.96 Aligned_cols=263 Identities=9% Similarity=0.029 Sum_probs=146.3
Q ss_pred eeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECC-----------C---Ce---------
Q 002615 606 CYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFR-----------N---YR--------- 662 (900)
Q Consensus 606 ~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~-----------~---g~--------- 662 (900)
+.|.+-..|..++|+.+-+|..+....-+..+.+.+..+.+++.|++...|... + ++
T Consensus 167 SADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~ 246 (481)
T KOG0300|consen 167 SADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEH 246 (481)
T ss_pred ccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccc
Confidence 446667777888888888777665555555666666777888888766555411 0 00
Q ss_pred -----------------EEEeeccCCc-cccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeee
Q 002615 663 -----------------CVYKLPCGGS-IFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCIT 724 (900)
Q Consensus 663 -----------------~~w~~~~~~~-~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~ 724 (900)
++-.+..+.. +.++-.+. .++.++.++++..-..||.++ |+++-....+..........
T Consensus 247 ~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEt--ge~v~~LtGHd~ELtHcstH 323 (481)
T KOG0300|consen 247 NRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVET--GEVVNILTGHDSELTHCSTH 323 (481)
T ss_pred ccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeeeccccceeeeecc--CceeccccCcchhccccccC
Confidence 0000000001 11111122 246677888999888999888 88776655444333333333
Q ss_pred eCCCEEEEEeecCcEEEEC-CCCCE-EeeecCC-CceeccccccccCCCeEEEEeeCCeEEEEeCCCCc-eeeEEecCCc
Q 002615 725 SANRHVICCLVDGHVVALD-SSGSI-IWRCRTG-GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGN-LLWEYSVGDP 800 (900)
Q Consensus 725 ~~~~~i~~~~~~g~v~~~d-~~G~~-~w~~~~~-~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~-~~w~~~~~~~ 800 (900)
+....++..+.|..+..|| ...-. +-.+... ..+.+ +.+..++.++.|+.|.++.+||..+-. .+-++...++
T Consensus 324 ptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS---~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~ 400 (481)
T KOG0300|consen 324 PTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTS---VVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSP 400 (481)
T ss_pred CcceEEEEeccCceeEeccchhhcceeeeecccccceeE---EEEecCCceeecCCCceEEEeeeccccCcceeeecCCc
Confidence 4455666667777777777 32111 1111111 11111 124457789999999999999987642 3445555444
Q ss_pred eecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecCcccccccccccceeeeeeeccCCccccCceeeC----C
Q 002615 801 ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIG----G 876 (900)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~~~----~ 876 (900)
+...... .....|.+.-++..|++||.+........... -.-+..+++..+..+ .
T Consensus 401 ~NRvavs------------~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrts---------RqgHrRMV~c~AW~eehp~c 459 (481)
T KOG0300|consen 401 ANRVAVS------------KGHPIIAIPHDNRQVRLFDLNGNRLARLPRTS---------RQGHRRMVTCCAWLEEHPAC 459 (481)
T ss_pred cceeEee------------cCCceEEeccCCceEEEEecCCCccccCCccc---------ccccceeeeeeeccccCccc
Confidence 3222211 11446777778888999999854222211110 011122333333222 4
Q ss_pred EEEEeeeCCeEEEEEcccc
Q 002615 877 RVFVGCRDDYIYCIALETQ 895 (900)
Q Consensus 877 ~l~vg~~dg~l~~ld~~tg 895 (900)
.||.++.|..++-|+..+-
T Consensus 460 nLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 460 NLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccccccccceeeeeEeccc
Confidence 6888888999999887654
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0018 Score=61.64 Aligned_cols=233 Identities=11% Similarity=0.119 Sum_probs=131.3
Q ss_pred eeEecCCCEEEEEeeCCEEEEEECCCCcE---EEEEecCCceeeeeeE-eC-CCCEEEEecCCCeEEEEECCCCeEEEee
Q 002615 593 AAVLADFSQVVVGCYKGKIYFLDYLTGDI---YWTFQTCGEVKCQPVV-DA-PRQLIWCGSHDHNLYALDFRNYRCVYKL 667 (900)
Q Consensus 593 ~~~~~~~~~i~vg~~dg~l~~~d~~tG~~---~w~~~~~~~~~~~~~~-~~-~~~~i~~gs~dg~l~~~d~~~g~~~w~~ 667 (900)
+.+.-.+.+|...+.|+.|..|...++.. +-....+........+ .+ .++.|..+++||.+..|...+| .|..
T Consensus 17 a~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g--~w~k 94 (299)
T KOG1332|consen 17 AQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG--RWTK 94 (299)
T ss_pred hhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC--chhh
Confidence 34444567888999999999998765432 3333333332223233 22 3456677899999999998887 5653
Q ss_pred cc----CCccccCceeec--cCCEEEEEeCCCcEEEEEcCCCCceeeeEe----ecCCcceeeeee--------------
Q 002615 668 PC----GGSIFGSPAIDE--VHDVLYVASTSGRLTAISVKALPFHTLWLH----ELEVPAFASLCI-------------- 723 (900)
Q Consensus 668 ~~----~~~~~~~~~~~~--~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~----~~~~~~~~s~~~-------------- 723 (900)
.. +.....+....+ -+-.|.+++.||.+..++.++. | .|.. ..+.....+...
T Consensus 95 ~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~-g--~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~ 171 (299)
T KOG1332|consen 95 AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS-G--GWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGP 171 (299)
T ss_pred hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC-C--CccchhhhhccccccceeeecCcCCCccccccCc
Confidence 22 222222222222 1245788999999999988763 2 2221 111111111111
Q ss_pred eeCCCEEEEEeecCcEEEEC-CCCCEEeeecC--CC------ceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeE
Q 002615 724 TSANRHVICCLVDGHVVALD-SSGSIIWRCRT--GG------PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWE 794 (900)
Q Consensus 724 ~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~--~~------~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~ 794 (900)
...-.++..|+.|..+-+++ .++ .|.... .+ .+.-.|.+.. ....|..++.||++..|-.....-.|+
T Consensus 172 ~~~~krlvSgGcDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl-~~s~iAS~SqDg~viIwt~~~e~e~wk 248 (299)
T KOG1332|consen 172 AAKVKRLVSGGCDNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGL-PKSTIASCSQDGTVIIWTKDEEYEPWK 248 (299)
T ss_pred ccccceeeccCCccceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCC-CceeeEEecCCCcEEEEEecCccCccc
Confidence 11124677888888888888 555 343321 11 1122221111 234688889999999998663335676
Q ss_pred EecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeec
Q 002615 795 YSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 841 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~ 841 (900)
..+-.+.. .+. ...+....++.+.++..|+++.+|..+.
T Consensus 249 ~tll~~f~-~~~-------w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 249 KTLLEEFP-DVV-------WRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ccccccCC-cce-------EEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 55444311 111 1122334489999999999999997763
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0091 Score=64.50 Aligned_cols=293 Identities=17% Similarity=0.201 Sum_probs=156.2
Q ss_pred cccccccc--ccccccceEEe-----eCCceEEEEecCCCeEEEEECCCCc-----EEEEEecCCcee---eceeEec-C
Q 002615 535 ELWKVHME--SCVDASPLVVL-----KDSDIYLFVGSHSHKFICADAKRSS-----VLWEIKLEGRIE---CSAAVLA-D 598 (900)
Q Consensus 535 ~~W~~~~~--~~v~~sp~v~~-----~~~~~~v~igs~~g~l~~~d~~tG~-----~~w~~~~~~~~~---~~~~~~~-~ 598 (900)
.-|+...+ ...+...+.+. .++...|++||++|.|..|++..+. ++-+..+...|. +..-++. +
T Consensus 8 ewWst~~~~~e~~d~~~l~v~~~~~~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~ 87 (418)
T PF14727_consen 8 EWWSTKCGENEEFDQGSLCVGNLDNSPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSE 87 (418)
T ss_pred heeeccCCCCCcCcCceEEEEcccCCCCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCC
Confidence 34776653 33444444442 2356799999999999999996544 333344443321 1111111 1
Q ss_pred CCEEEEEeeCC-EEEEEECCCCc-----E-----EEEEecC--CceeeeeeEeC--CCCEEEEecCCCeEEEEECCCCeE
Q 002615 599 FSQVVVGCYKG-KIYFLDYLTGD-----I-----YWTFQTC--GEVKCQPVVDA--PRQLIWCGSHDHNLYALDFRNYRC 663 (900)
Q Consensus 599 ~~~i~vg~~dg-~l~~~d~~tG~-----~-----~w~~~~~--~~~~~~~~~~~--~~~~i~~gs~dg~l~~~d~~~g~~ 663 (900)
...+.|-.-.. .+|.+-..+|. . ....... ....+...+.. +...|.+-+.||.|..|+.+. .
T Consensus 88 ~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~--~ 165 (418)
T PF14727_consen 88 DLQLAVLHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES--F 165 (418)
T ss_pred cceEEEecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc--E
Confidence 11233321111 23433333333 1 1111111 11111111211 145677889999999998654 3
Q ss_pred EEeeccCCccccCc-eeeccCCEEEEEeCCCcEEEEEcC---------------------CCCceeeeEeecCCcceeee
Q 002615 664 VYKLPCGGSIFGSP-AIDEVHDVLYVASTSGRLTAISVK---------------------ALPFHTLWLHELEVPAFASL 721 (900)
Q Consensus 664 ~w~~~~~~~~~~~~-~~~~~~~~l~v~t~~g~l~~~~~~---------------------~~~g~~~w~~~~~~~~~~s~ 721 (900)
......++.....| ++....+.+++++.+..+.+|... ...-..-|++..+.....-.
T Consensus 166 ~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~ 245 (418)
T PF14727_consen 166 AFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQ 245 (418)
T ss_pred EEEEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEE
Confidence 33333333333333 333345677888877778777521 11123568888887664322
Q ss_pred eeee--C-CCEEEEEeecCcEEEECCCCCEEeeecCCCceecccc--ccccCC----CeEEEEeeCCeEEEEeCCCCcee
Q 002615 722 CITS--A-NRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPC--TSFALP----SQVLICSRNGSIYSFEQESGNLL 792 (900)
Q Consensus 722 ~~~~--~-~~~i~~~~~~g~v~~~d~~G~~~w~~~~~~~~~~~~~--~~~~~~----~~l~~g~~dg~l~~~d~~tG~~~ 792 (900)
.+.. . ...++.| ...+++++.+|++.|..+.+....+... +....+ ..+.+++.++.+..|. +.+++
T Consensus 246 v~~~~~~~~~IvvLg--er~Lf~l~~~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~ 321 (418)
T PF14727_consen 246 VVRFSSSESDIVVLG--ERSLFCLKDNGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLV 321 (418)
T ss_pred EEEcCCCCceEEEEe--cceEEEEcCCCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEE
Confidence 2221 1 2334444 4689999988999998876554322211 101111 2489999999999995 57899
Q ss_pred eEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecC
Q 002615 793 WEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 842 (900)
Q Consensus 793 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~ 842 (900)
|.-++.....+.... ......+.|.+=+.+|.|.+--..+.
T Consensus 322 WsA~l~~~PVal~v~---------~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 322 WSAQLPHVPVALSVA---------NFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred EecCCCCCCEEEEec---------ccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 988875543322111 11122677888888898877766544
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0049 Score=60.08 Aligned_cols=228 Identities=16% Similarity=0.100 Sum_probs=132.7
Q ss_pred eCCceEEEEec-CCCeEEEEECCCCcEEEEEecCCceee-ceeEecCCCEEEEEeeCCEEEEEECCCCcEE-EEEec--C
Q 002615 554 KDSDIYLFVGS-HSHKFICADAKRSSVLWEIKLEGRIEC-SAAVLADFSQVVVGCYKGKIYFLDYLTGDIY-WTFQT--C 628 (900)
Q Consensus 554 ~~~~~~v~igs-~~g~l~~~d~~tG~~~w~~~~~~~~~~-~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~-w~~~~--~ 628 (900)
.+.++.||.+. ..|.+-.+|+.||+.. .+.++..-.- .+++.+| +..|+......|.++|.+|++.. |.... .
T Consensus 69 papdG~VWft~qg~gaiGhLdP~tGev~-~ypLg~Ga~Phgiv~gpd-g~~Witd~~~aI~R~dpkt~evt~f~lp~~~a 146 (353)
T COG4257 69 PAPDGAVWFTAQGTGAIGHLDPATGEVE-TYPLGSGASPHGIVVGPD-GSAWITDTGLAIGRLDPKTLEVTRFPLPLEHA 146 (353)
T ss_pred cCCCCceEEecCccccceecCCCCCceE-EEecCCCCCCceEEECCC-CCeeEecCcceeEEecCcccceEEeecccccC
Confidence 34678788765 4677889999999986 4666543222 3344445 45787655547999999888764 44332 2
Q ss_pred CceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeE-EEeeccCCccccCceeeccCCEEEEEeCCC-cEEEEEcCCCCce
Q 002615 629 GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRC-VYKLPCGGSIFGSPAIDEVHDVLYVASTSG-RLTAISVKALPFH 706 (900)
Q Consensus 629 ~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~-~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g-~l~~~~~~~~~g~ 706 (900)
....-++++++ .+++|.....|.--.+|+.++.+ +|....++.... +|..+ ++.+|+++..| .|..+|+.+ |.
T Consensus 147 ~~nlet~vfD~-~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyG-i~atp-dGsvwyaslagnaiaridp~~--~~ 221 (353)
T COG4257 147 DANLETAVFDP-WGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYG-ICATP-DGSVWYASLAGNAIARIDPFA--GH 221 (353)
T ss_pred CCcccceeeCC-CccEEEeeccccceecCcccCceeeeccCCCCCCcc-eEECC-CCcEEEEeccccceEEccccc--CC
Confidence 23345566765 57788766666666788877542 344443433333 33443 47888887544 566777766 42
Q ss_pred eeeEeecCCcce--eeeeeeeCCCEEEEEee-cCcEEEEC-CCCC-EEeeecCCCceeccccccccCCCeEEEE-eeCCe
Q 002615 707 TLWLHELEVPAF--ASLCITSANRHVICCLV-DGHVVALD-SSGS-IIWRCRTGGPIFAGPCTSFALPSQVLIC-SRNGS 780 (900)
Q Consensus 707 ~~w~~~~~~~~~--~s~~~~~~~~~i~~~~~-~g~v~~~d-~~G~-~~w~~~~~~~~~~~~~~~~~~~~~l~~g-~~dg~ 780 (900)
.. .+....... +.-......+.+|+.+. .+.++.|| .+-. ..|.+....+ -...+..+..+.+|+. ..-|.
T Consensus 222 ae-v~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~a--rpys~rVD~~grVW~sea~aga 298 (353)
T COG4257 222 AE-VVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKA--RPYSMRVDRHGRVWLSEADAGA 298 (353)
T ss_pred cc-eecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCC--CcceeeeccCCcEEeeccccCc
Confidence 11 111111100 11122334678888865 46899999 4332 2244433222 1112345667889985 34577
Q ss_pred EEEEeCCCCce
Q 002615 781 IYSFEQESGNL 791 (900)
Q Consensus 781 l~~~d~~tG~~ 791 (900)
|..||+++-++
T Consensus 299 i~rfdpeta~f 309 (353)
T COG4257 299 IGRFDPETARF 309 (353)
T ss_pred eeecCcccceE
Confidence 89999887655
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.028 Score=62.51 Aligned_cols=267 Identities=17% Similarity=0.147 Sum_probs=153.8
Q ss_pred CceEEEEecC-CCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEE-eeCCEEEEEECCCCcEEE-EEecCCcee
Q 002615 556 SDIYLFVGSH-SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVG-CYKGKIYFLDYLTGDIYW-TFQTCGEVK 632 (900)
Q Consensus 556 ~~~~v~igs~-~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg-~~dg~l~~~d~~tG~~~w-~~~~~~~~~ 632 (900)
.+..++.++. ++.+..|+..+++.......+........+.+++..++++ +.|+.+..||..++.... .+..+....
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 245 (466)
T COG2319 166 DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV 245 (466)
T ss_pred CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce
Confidence 3446666665 8999999999888877776655444455666666545555 789999999988787776 344333322
Q ss_pred eeeeEeCCCCEEEEecCCCeEEEEECCCCeE-EEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEe
Q 002615 633 CQPVVDAPRQLIWCGSHDHNLYALDFRNYRC-VYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLH 711 (900)
Q Consensus 633 ~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~-~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~ 711 (900)
...+.+++..+..++.++.+..||...... ......+........+.+....+..++.++.+..|+..+ .......
T Consensus 246 -~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~ 322 (466)
T COG2319 246 -VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET--GKLLSSL 322 (466)
T ss_pred -eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCC--CceEEEe
Confidence 224555555777889999999999886654 444422222222223443456677677777788887765 4444443
Q ss_pred e--cCCcceeeeeeeeCC-CEEEEE-eecCcEEEEC-CCCCEEeeecCCCceeccccccccCCCeEE-EEeeCCeEEEEe
Q 002615 712 E--LEVPAFASLCITSAN-RHVICC-LVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVL-ICSRNGSIYSFE 785 (900)
Q Consensus 712 ~--~~~~~~~s~~~~~~~-~~i~~~-~~~g~v~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~-~g~~dg~l~~~d 785 (900)
. .+........+ ..+ ..+..+ ..++.+..++ ................... ... . ..+. .+..++.+..|+
T Consensus 323 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~-~~~~~~~~~~~~~~~~~ 398 (466)
T COG2319 323 TLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVS-FSP-D-GRVVSSGSTDGTVRLWD 398 (466)
T ss_pred eecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEE-ECC-C-CCEEEEecCCCceEEEe
Confidence 3 22222233333 222 355555 4566677777 4444333332222211111 111 1 2222 256778889998
Q ss_pred CCCCceeeEEecC-CceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeec
Q 002615 786 QESGNLLWEYSVG-DPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 841 (900)
Q Consensus 786 ~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~ 841 (900)
............. ..+....... .+..++.+..++.+..|+...
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 399 LSTGSLLRNLDGHTSRVTSLDFSP------------DGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cccCeeeeeccCCCCcEEEEEECC------------CCcEEEEecCCCcEEEEeccC
Confidence 8877766555443 2222222111 255666677888899888763
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.045 Score=57.44 Aligned_cols=190 Identities=11% Similarity=0.142 Sum_probs=97.8
Q ss_pred eeeeeEeCCCCEEEE-ecCC--CeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceee
Q 002615 632 KCQPVVDAPRQLIWC-GSHD--HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTL 708 (900)
Q Consensus 632 ~~~~~~~~~~~~i~~-gs~d--g~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~ 708 (900)
.++|++.. +.||. ..++ |+||..|.+........+.. ....--+ ..++.+|++ +..|.+|.||+.+.+ +
T Consensus 228 vS~PmIV~--~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFt-dYY~R~~-nsDGkrIvF-q~~GdIylydP~td~---l 299 (668)
T COG4946 228 VSSPMIVG--ERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFT-DYYPRNA-NSDGKRIVF-QNAGDIYLYDPETDS---L 299 (668)
T ss_pred cCCceEEc--ceEEEEecccCccceEEeccCCchhhhcCCch-hcccccc-CCCCcEEEE-ecCCcEEEeCCCcCc---c
Confidence 34555553 44554 4444 57888886543332222211 1111111 122355554 456889999998733 3
Q ss_pred eEeecCCcc--------eeeee-----eee-CCCEEEEEeecCcEEEECCCCCEEeeecCCCceeccccccccCCCeEEE
Q 002615 709 WLHELEVPA--------FASLC-----ITS-ANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLI 774 (900)
Q Consensus 709 w~~~~~~~~--------~~s~~-----~~~-~~~~i~~~~~~g~v~~~d~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~ 774 (900)
-+.+.+-+. +..+. ... +++++...+ -|..+.++..+...-+....+.+-... + ....+.+.+
T Consensus 300 ekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iqv~~~~~VrY~r-~-~~~~e~~vi 376 (668)
T COG4946 300 EKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQVGKKGGVRYRR-I-QVDPEGDVI 376 (668)
T ss_pred eeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEEcCCCCceEEEE-E-ccCCcceEE
Confidence 333332111 11111 111 233333333 466777763222222332222221111 1 122347888
Q ss_pred EeeCC-eEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecCcc
Q 002615 775 CSRNG-SIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVT 844 (900)
Q Consensus 775 g~~dg-~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~ 844 (900)
|+.|| .|-.+|..+|+..-...--+.+.+... ..++..+.++.....|+++|.++|.-
T Consensus 377 gt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~v------------s~dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 377 GTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKV------------SPDGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred eccCCceEEEEecCCceEEEeeCCccceEEEEE------------cCCCcEEEEEcCceEEEEEEecCCCe
Confidence 99998 899999998887654433333333221 22367899999999999999998843
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0073 Score=67.72 Aligned_cols=175 Identities=13% Similarity=0.081 Sum_probs=98.1
Q ss_pred EEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecC---CCeEEEEECCCCeEEEeeccCCccccCceeeccCCEE
Q 002615 610 KIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH---DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVL 686 (900)
Q Consensus 610 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~---dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l 686 (900)
.|+.+|...+... .+..+......|.+.+++..|+..+. +..||.||..+|+........+ ....+...+++..|
T Consensus 183 ~l~~~d~dg~~~~-~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~l 260 (435)
T PRK05137 183 RLAIMDQDGANVR-YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPG-MTFAPRFSPDGRKV 260 (435)
T ss_pred EEEEECCCCCCcE-EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCC-cccCcEECCCCCEE
Confidence 6888886544433 33334445567888887777666543 4679999999887643333333 34466777766676
Q ss_pred EEE-eCCC--cEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeec---CcEEEEC-CCCCEEeeecCCCcee
Q 002615 687 YVA-STSG--RLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVD---GHVVALD-SSGSIIWRCRTGGPIF 759 (900)
Q Consensus 687 ~v~-t~~g--~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~---g~v~~~d-~~G~~~w~~~~~~~~~ 759 (900)
++. +.+| .|+.+|+++ +.. .+..........+.+.+++..++..+.. ..|+.+| .+++.. ++.......
T Consensus 261 a~~~~~~g~~~Iy~~d~~~--~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~ 336 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRS--GTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRY 336 (435)
T ss_pred EEEEecCCCceEEEEECCC--Cce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcc
Confidence 544 4343 488889876 443 2222222222445667777777766532 2588888 544432 232221112
Q ss_pred ccccccccCCCeEEEEeeC---CeEEEEeCCCCce
Q 002615 760 AGPCTSFALPSQVLICSRN---GSIYSFEQESGNL 791 (900)
Q Consensus 760 ~~~~~~~~~~~~l~~g~~d---g~l~~~d~~tG~~ 791 (900)
..+..+. .++.|++.+.+ ..++.+|.+++..
T Consensus 337 ~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d~~~~~~ 370 (435)
T PRK05137 337 STPVWSP-RGDLIAFTKQGGGQFSIGVMKPDGSGE 370 (435)
T ss_pred cCeEECC-CCCEEEEEEcCCCceEEEEEECCCCce
Confidence 2222222 34456555433 2588888765543
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00018 Score=79.05 Aligned_cols=147 Identities=12% Similarity=0.036 Sum_probs=93.2
Q ss_pred CceEEEEecCCCeEEEEECCC---CcEEEEEecCCceeeceeEecC-CCEEEEEeeCCEEEEEECCCCcEEEEEecCCce
Q 002615 556 SDIYLFVGSHSHKFICADAKR---SSVLWEIKLEGRIECSAAVLAD-FSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV 631 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~t---G~~~w~~~~~~~~~~~~~~~~~-~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~ 631 (900)
..+.|+..+..|.|.+||+.. .+.+-.+.-+.|-..+..+..- -..|+.|+.||.|.+||.+..+-.-++....+.
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSES 178 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSES 178 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchh
Confidence 456778888899999999875 3333344555565455555442 346888999999999999877665555443322
Q ss_pred eeeeeEeCC-CCEEEEecCCCeEEEEECCC-CeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCC
Q 002615 632 KCQPVVDAP-RQLIWCGSHDHNLYALDFRN-YRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKA 702 (900)
Q Consensus 632 ~~~~~~~~~-~~~i~~gs~dg~l~~~d~~~-g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~ 702 (900)
.--..+.+. ...+..+..+|.|..||+.. .++..++..+.......-..++...|..|+.|+.+..||..+
T Consensus 179 iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~ 251 (839)
T KOG0269|consen 179 IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTD 251 (839)
T ss_pred hhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccC
Confidence 222223333 34455566678899999864 233333444444444444555456667777889999999764
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0061 Score=68.19 Aligned_cols=180 Identities=15% Similarity=0.151 Sum_probs=106.3
Q ss_pred CeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEE-eeCC--EEEEEECCCCcEEEEEecCCceeeeeeEeCCCCE
Q 002615 567 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVG-CYKG--KIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL 643 (900)
Q Consensus 567 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg-~~dg--~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 643 (900)
..|+.+|..+|+.......... ..++.++++++.+++. +.++ .||.+|..+++..-. .........+.+.+++..
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~-~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~s~dg~~ 291 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGM-NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL-TNGPGIDTEPSWSPDGKS 291 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCC-ccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC-CCCCCCCCCEEECCCCCE
Confidence 4799999999876543333332 3357888888877654 3333 599999888865422 222233345566666666
Q ss_pred EEEecC-C--CeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCC---cEEEEEcCCCCceeeeEeecCCcc
Q 002615 644 IWCGSH-D--HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSG---RLTAISVKALPFHTLWLHELEVPA 717 (900)
Q Consensus 644 i~~gs~-d--g~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g---~l~~~~~~~~~g~~~w~~~~~~~~ 717 (900)
|++.+. + ..||.+|..+++... ....+.....+.+.+++..+++.+.++ .++.+|+.+ +....... ...
T Consensus 292 l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~--~~~~~l~~--~~~ 366 (417)
T TIGR02800 292 IAFTSDRGGSPQIYMMDADGGEVRR-LTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG--GGERVLTD--TGL 366 (417)
T ss_pred EEEEECCCCCceEEEEECCCCCEEE-eecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC--CCeEEccC--CCC
Confidence 665543 2 269999988876542 333344445667776677787777654 788888876 43221111 111
Q ss_pred eeeeeeeeCCCEEEEEeecC---cEEEECCCCCEEeeec
Q 002615 718 FASLCITSANRHVICCLVDG---HVVALDSSGSIIWRCR 753 (900)
Q Consensus 718 ~~s~~~~~~~~~i~~~~~~g---~v~~~d~~G~~~w~~~ 753 (900)
...+.+.++++.++..+.++ .++.++.+|+....+.
T Consensus 367 ~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~ 405 (417)
T TIGR02800 367 DESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARLP 405 (417)
T ss_pred CCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeECC
Confidence 23445666677776665543 2344445666555443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0037 Score=69.86 Aligned_cols=260 Identities=13% Similarity=0.147 Sum_probs=131.9
Q ss_pred EEEEEECCCC-cEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeE--EEeeccCCccccCce-----e-e
Q 002615 610 KIYFLDYLTG-DIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRC--VYKLPCGGSIFGSPA-----I-D 680 (900)
Q Consensus 610 ~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~--~w~~~~~~~~~~~~~-----~-~ 680 (900)
.+|.|+.++- ...-.+.....+.+....-.+...+..|+++|.|..||...+.- .+...........++ + .
T Consensus 223 ~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~ 302 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN 302 (555)
T ss_pred eEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc
Confidence 5777776654 44445555556655444333457788899999999999987755 333322111111111 1 1
Q ss_pred ccCCEEEEEeCCCcEEEEEcCCCCc----eeeeEeec-C---Ccce--eeeee-eeCCCEEEEEeecCcEEEEC-CCCC-
Q 002615 681 EVHDVLYVASTSGRLTAISVKALPF----HTLWLHEL-E---VPAF--ASLCI-TSANRHVICCLVDGHVVALD-SSGS- 747 (900)
Q Consensus 681 ~~~~~l~v~t~~g~l~~~~~~~~~g----~~~w~~~~-~---~~~~--~s~~~-~~~~~~i~~~~~~g~v~~~d-~~G~- 747 (900)
..+..++.++.||.|..|+++...- ...-.... + .... .+..+ ..+...+++|+..|.|+.-+ ...+
T Consensus 303 ~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~ 382 (555)
T KOG1587|consen 303 EHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTP 382 (555)
T ss_pred CCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcc
Confidence 1124488888899999998664110 00000000 0 0000 11111 22356788999999998855 2211
Q ss_pred ---EEee----ec-CCCceeccccccccCCCeEEEEeeCCeEEEEeCC-CCceeeEEecCCc-eeccccccccccccccc
Q 002615 748 ---IIWR----CR-TGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQE-SGNLLWEYSVGDP-ITASAYIDEHLQLKLES 817 (900)
Q Consensus 748 ---~~w~----~~-~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~-tG~~~w~~~~~~~-~~~~~~~~~~~~~~~~~ 817 (900)
.+++ +. ..+++.+.....+ ...++..+.|.++..|... .-.++..+..... ++......
T Consensus 383 ~~~~~~~~~~~~~~h~g~v~~v~~nPF--~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSp--------- 451 (555)
T KOG1587|consen 383 APEVSYKGHSTFITHIGPVYAVSRNPF--YPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSP--------- 451 (555)
T ss_pred cccccccccccccccCcceEeeecCCC--ccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcC---------
Confidence 1111 11 1222222221112 2345555558888888765 3333322222222 22211111
Q ss_pred ccCCCeEEEEEcCCCcEEEEEeecCcccccccccccceeeeeeeccCCccccCcee--eCCEEEEeeeCCeEEEEEcc
Q 002615 818 CLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCIALE 893 (900)
Q Consensus 818 ~~~~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~--~~~~l~vg~~dg~l~~ld~~ 893 (900)
..-..++++..+|.|.+||......+ + ..+.+....+...... .+..|.+|...|.++.|++.
T Consensus 452 --trpavF~~~d~~G~l~iWDLl~~~~~-------P----v~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 452 --TRPAVFATVDGDGNLDIWDLLQDDEE-------P----VLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred --cCceEEEEEcCCCceehhhhhccccC-------C----cccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 11456778888999999998743111 0 0111111111111111 25578999999999999875
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0052 Score=66.18 Aligned_cols=162 Identities=12% Similarity=0.085 Sum_probs=115.0
Q ss_pred EEEEecCCCeEEEEECCCCcEEEEEecCCc-----eeec------------------eeEecCCCEEEEEeeCCEEEEEE
Q 002615 559 YLFVGSHSHKFICADAKRSSVLWEIKLEGR-----IECS------------------AAVLADFSQVVVGCYKGKIYFLD 615 (900)
Q Consensus 559 ~v~igs~~g~l~~~d~~tG~~~w~~~~~~~-----~~~~------------------~~~~~~~~~i~vg~~dg~l~~~d 615 (900)
+....+.+|.+..||..+++..-++.-.-+ +... .-.+.+-..++.|+..|.+..|+
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys 86 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYS 86 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEE
Confidence 344456788899999988887655432111 1000 01122334577899999999999
Q ss_pred CCCCcEEEEEecCC--ceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCC
Q 002615 616 YLTGDIYWTFQTCG--EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSG 693 (900)
Q Consensus 616 ~~tG~~~w~~~~~~--~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g 693 (900)
...|++.|++.++. ..+........-+-||.++.|+.+..|+.++++.+.++.+.....++.++.+++..+.+++ +
T Consensus 87 ~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~ 164 (541)
T KOG4547|consen 87 VAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--R 164 (541)
T ss_pred ecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--c
Confidence 99999999988643 2333333344567799999999999999999998888888888888899988666666654 6
Q ss_pred cEEEEEcCCCCceeeeEeecCCcceeeeeee
Q 002615 694 RLTAISVKALPFHTLWLHELEVPAFASLCIT 724 (900)
Q Consensus 694 ~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~ 724 (900)
.|..||.++ ++.+-++..+.....+..+.
T Consensus 165 ~ik~~~~~~--kevv~~ftgh~s~v~t~~f~ 193 (541)
T KOG4547|consen 165 QIKVLDIET--KEVVITFTGHGSPVRTLSFT 193 (541)
T ss_pred eEEEEEccC--ceEEEEecCCCcceEEEEEE
Confidence 799999998 88888877766555555443
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0078 Score=67.54 Aligned_cols=174 Identities=13% Similarity=0.176 Sum_probs=103.0
Q ss_pred CeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEe-eCC--EEEEEECCCCcEEEEEecCCceeeeeeEeCCCCE
Q 002615 567 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGC-YKG--KIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL 643 (900)
Q Consensus 567 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~-~dg--~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 643 (900)
..|+.+|..+|+........+ ....+.+++++..+++.. .+| .||.+|..+|+... ..........+.+.+++..
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g-~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~ 300 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEG-LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRT 300 (430)
T ss_pred CEEEEEECCCCCEEEccCCCC-CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCE
Confidence 469999999997654322222 233678899988876543 344 69999999887643 2223334455677777777
Q ss_pred EEEecCC---CeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCC-C--cEEEEEcCCCCceeeeEeecCCcc
Q 002615 644 IWCGSHD---HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS-G--RLTAISVKALPFHTLWLHELEVPA 717 (900)
Q Consensus 644 i~~gs~d---g~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~-g--~l~~~~~~~~~g~~~w~~~~~~~~ 717 (900)
|++.+.. ..||.+|..+|+..... ..+.....+.++++++.|++.+.. + .|+.+|+.+ |+...-... ..
T Consensus 301 i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t--g~~~~lt~~--~~ 375 (430)
T PRK00178 301 LYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR--GSVRILTDT--SL 375 (430)
T ss_pred EEEEECCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCCCEEEEEEccCCceEEEEEECCC--CCEEEccCC--CC
Confidence 7665532 36999999888754322 233334456666667777776543 2 477888876 543221111 11
Q ss_pred eeeeeeeeCCCEEEEEeec---CcEEEECCCCC
Q 002615 718 FASLCITSANRHVICCLVD---GHVVALDSSGS 747 (900)
Q Consensus 718 ~~s~~~~~~~~~i~~~~~~---g~v~~~d~~G~ 747 (900)
...+.+.+++..++..+.. ..++.++.+|.
T Consensus 376 ~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 376 DESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred CCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 1244556666666655543 23555554443
|
|
| >PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A | Back alignment and domain information |
|---|
Probab=97.69 E-value=6.4e-05 Score=51.57 Aligned_cols=39 Identities=36% Similarity=0.668 Sum_probs=27.5
Q ss_pred eeeeeeccCCccccCceeeCCEEEEeeeCCeEEEEEccc
Q 002615 856 QEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALET 894 (900)
Q Consensus 856 ~~~~~~~l~~~~~ss~~~~~~~l~vg~~dg~l~~ld~~t 894 (900)
+++|++++++.+.++|++.++.||+++.+|.|||+|.+|
T Consensus 2 ~~~W~~~~~~~~~~~~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 2 KVLWSYDTGGPIWSSPAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp -EEEEEE-SS---S--EECTSEEEEE-TTSEEEEEETT-
T ss_pred ceeEEEECCCCcCcCCEEECCEEEEEcCCCEEEEEeCCC
Confidence 456778888888899999999999999999999999875
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.045 Score=59.28 Aligned_cols=182 Identities=13% Similarity=0.165 Sum_probs=105.1
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcce-eeeeeeeCCCEEEEEeecCcEEEEC-C----------------
Q 002615 683 HDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAF-ASLCITSANRHVICCLVDGHVVALD-S---------------- 744 (900)
Q Consensus 683 ~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~-~s~~~~~~~~~i~~~~~~g~v~~~d-~---------------- 744 (900)
.+.|.|-+.||.+..|+-+. .......+.-.. .....+...+.+++++.+..+.+|. .
T Consensus 145 ~~~IcVQS~DG~L~~feqe~----~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~ 220 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQES----FAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTE 220 (418)
T ss_pred ceEEEEEecCceEEEEeCCc----EEEEEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccccccc
Confidence 36789999999999998664 232333332111 1223444556677776666676664 1
Q ss_pred ----CCCE---EeeecCCCceecccccccc-CCCeEEEEeeCCeEEEEeCCCCceeeEEecCCceeccc-cccccccccc
Q 002615 745 ----SGSI---IWRCRTGGPIFAGPCTSFA-LPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASA-YIDEHLQLKL 815 (900)
Q Consensus 745 ----~G~~---~w~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~-~~~~~~~~~~ 815 (900)
+++. -|++..+..+....++... ....|++-+ ...++|++ .+|+++|..+++-...+.. +....
T Consensus 221 ~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~-~~G~l~~~krLd~~p~~~~~Y~~~~----- 293 (418)
T PF14727_consen 221 QDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLK-DNGSLRFQKRLDYNPSCFCPYRVPW----- 293 (418)
T ss_pred ccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEc-CCCeEEEEEecCCceeeEEEEEeec-----
Confidence 2332 4888888876655443322 223344444 45699999 5799999888765443322 11100
Q ss_pred ccccCCCeEEEEEcCCCcEEEEEeecCcccccccccccceeeeeeeccCCccccCcee----eCCEEEEeeeCCeEEEE
Q 002615 816 ESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM----IGGRVFVGCRDDYIYCI 890 (900)
Q Consensus 816 ~~~~~~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~----~~~~l~vg~~dg~l~~l 890 (900)
.........+.+++.++.+.+|.-. ++.|..+++...++--+. .+|.|.+-+.+|.|-+-
T Consensus 294 ~~~~~~~~~llV~t~t~~LlVy~d~---------------~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~ 357 (418)
T PF14727_consen 294 YNEPSTRLNLLVGTHTGTLLVYEDT---------------TLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVS 357 (418)
T ss_pred ccCCCCceEEEEEecCCeEEEEeCC---------------eEEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEE
Confidence 0000012358999999999999643 778888775543321111 14666666667766543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0065 Score=67.88 Aligned_cols=208 Identities=13% Similarity=0.084 Sum_probs=113.9
Q ss_pred CCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCC---CeEEEEECCCCeEEEeeccCCccccCceeeccCC
Q 002615 608 KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD---HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHD 684 (900)
Q Consensus 608 dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~d---g~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~ 684 (900)
+..|+.+|...+. ......+......|.+.+++..|++.+.+ ..|+.||..+|+........+ ....+...+++.
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g-~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG-HNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC-ccCceeECCCCC
Confidence 3578888854333 33333344455678888887777666543 369999999886543333333 233567777667
Q ss_pred EEEEEe-CCCc--EEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEe-ecCc--EEEEC-CCCCEEeeecCCCc
Q 002615 685 VLYVAS-TSGR--LTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCL-VDGH--VVALD-SSGSIIWRCRTGGP 757 (900)
Q Consensus 685 ~l~v~t-~~g~--l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~-~~g~--v~~~d-~~G~~~w~~~~~~~ 757 (900)
.|+++. .+|. |+.+|.++ ++. .+...+......+.+.+++..+++.+ .+|. |+.++ ..+.... .....
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~--~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~-l~~~~- 335 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANG--GTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL-VGGRG- 335 (429)
T ss_pred EEEEEEecCCcEEEEEEECCC--CCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-ecCCC-
Confidence 777654 4664 66777765 432 22222222334566777777666554 3443 44555 3333321 11111
Q ss_pred eeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEE
Q 002615 758 IFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHIL 837 (900)
Q Consensus 758 ~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~ 837 (900)
. .+.+ ...+..|++.+.+ .++.+|..+|+....... .. ...+ +..+++..+++++.+|...+|
T Consensus 336 -~-~~~~-SpDG~~ia~~~~~-~i~~~Dl~~g~~~~lt~~-~~-~~~~-----------~~sPdG~~i~~~s~~g~~~~l 398 (429)
T PRK01742 336 -Y-SAQI-SADGKTLVMINGD-NVVKQDLTSGSTEVLSST-FL-DESP-----------SISPNGIMIIYSSTQGLGKVL 398 (429)
T ss_pred -C-CccC-CCCCCEEEEEcCC-CEEEEECCCCCeEEecCC-CC-CCCc-----------eECCCCCEEEEEEcCCCceEE
Confidence 1 1211 1124456666554 477899988875421111 11 1111 123347788888888877777
Q ss_pred Ee
Q 002615 838 RV 839 (900)
Q Consensus 838 d~ 839 (900)
+.
T Consensus 399 ~~ 400 (429)
T PRK01742 399 QL 400 (429)
T ss_pred EE
Confidence 65
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.04 Score=68.13 Aligned_cols=231 Identities=12% Similarity=0.173 Sum_probs=127.9
Q ss_pred CceEEEEec-CCCeEEEEECCCCcEEEEEecCCc--------------eeeceeEecCCCEEEEEee-CCEEEEEECCCC
Q 002615 556 SDIYLFVGS-HSHKFICADAKRSSVLWEIKLEGR--------------IECSAAVLADFSQVVVGCY-KGKIYFLDYLTG 619 (900)
Q Consensus 556 ~~~~v~igs-~~g~l~~~d~~tG~~~w~~~~~~~--------------~~~~~~~~~~~~~i~vg~~-dg~l~~~d~~tG 619 (900)
.++.+||.. .+++|+.+|.. |+..-.....+. .....++..+++.|||... ++.|..+|..++
T Consensus 578 ~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~ 656 (1057)
T PLN02919 578 LNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNE 656 (1057)
T ss_pred CCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCC
Confidence 366777765 46789999976 554433322100 0124556667777888754 467888998777
Q ss_pred cEEEEEecC-------C------c---eeeeeeEeCCCCEEEEe-cCCCeEEEEECCCCeEEEeeccC-------Cc---
Q 002615 620 DIYWTFQTC-------G------E---VKCQPVVDAPRQLIWCG-SHDHNLYALDFRNYRCVYKLPCG-------GS--- 672 (900)
Q Consensus 620 ~~~w~~~~~-------~------~---~~~~~~~~~~~~~i~~g-s~dg~l~~~d~~~g~~~w~~~~~-------~~--- 672 (900)
.+.-....+ + . ......+++.++.+|+. +.++.|+.||..+|...- +... +.
T Consensus 657 ~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~ 735 (1057)
T PLN02919 657 TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGT 735 (1057)
T ss_pred EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccccCCCCccc
Confidence 653211100 0 0 01123455556777776 456789999998876532 1111 00
Q ss_pred --c---ccCceeeccCCEEEEEeC-CCcEEEEEcCCCCceeeeEeec-----------C---C----cce---eeeeeee
Q 002615 673 --I---FGSPAIDEVHDVLYVAST-SGRLTAISVKALPFHTLWLHEL-----------E---V----PAF---ASLCITS 725 (900)
Q Consensus 673 --~---~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~w~~~~-----------~---~----~~~---~s~~~~~ 725 (900)
. -...+++++++.||++.. ++.|..||+++ +...+.... + . ..+ ....+..
T Consensus 736 ~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t--g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~ 813 (1057)
T PLN02919 736 STSFAQPSGISLSPDLKELYIADSESSSIRALDLKT--GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK 813 (1057)
T ss_pred cccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC--CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC
Confidence 0 112345665667887764 57899999886 443322110 0 0 001 1223333
Q ss_pred CCCEEEEE-eecCcEEEEC-CCCCEEeeecCCCc----------eecccc-ccccCCCeEEEEe-eCCeEEEEeCCCCce
Q 002615 726 ANRHVICC-LVDGHVVALD-SSGSIIWRCRTGGP----------IFAGPC-TSFALPSQVLICS-RNGSIYSFEQESGNL 791 (900)
Q Consensus 726 ~~~~i~~~-~~~g~v~~~d-~~G~~~w~~~~~~~----------~~~~~~-~~~~~~~~l~~g~-~dg~l~~~d~~tG~~ 791 (900)
++.+|++ +.++.|..+| .++.+......+.. .+..|. +....++.+|++. .++.|..||.++++.
T Consensus 814 -dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 814 -DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred -CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 3456665 4577899999 66665433322210 122231 2344467788874 577899999998875
|
|
| >PF01011 PQQ: PQQ enzyme repeat family | Back alignment and domain information |
|---|
Probab=97.67 E-value=8.1e-05 Score=50.24 Aligned_cols=37 Identities=41% Similarity=0.706 Sum_probs=32.1
Q ss_pred CEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeee
Q 002615 600 SQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPV 636 (900)
Q Consensus 600 ~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~ 636 (900)
+.||+++.+|.|+++|.+||+++|+++.+..+.+.|+
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~~~~~p~ 37 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKFQTGPPVDSSPI 37 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEEESSSGGGSCBE
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEeeeCCCCCccCcC
Confidence 3689999999999999999999999998877666553
|
; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A .... |
| >PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=6.4e-05 Score=51.56 Aligned_cols=39 Identities=23% Similarity=0.369 Sum_probs=27.8
Q ss_pred cccccccccccccccceEEeeCCceEEEEecCCCeEEEEECCC
Q 002615 534 QELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKR 576 (900)
Q Consensus 534 ~~~W~~~~~~~v~~sp~v~~~~~~~~v~igs~~g~l~~~d~~t 576 (900)
+++|+++++..+.++|++ .++.||+++.+|.|+++|++|
T Consensus 2 ~~~W~~~~~~~~~~~~~v----~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 2 KVLWSYDTGGPIWSSPAV----AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp -EEEEEE-SS---S--EE----CTSEEEEE-TTSEEEEEETT-
T ss_pred ceeEEEECCCCcCcCCEE----ECCEEEEEcCCCEEEEEeCCC
Confidence 367999999999999988 789999999999999999875
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.007 Score=69.85 Aligned_cols=108 Identities=12% Similarity=0.065 Sum_probs=82.7
Q ss_pred eeCCceEEEEecCCCeEEEEECCC----------C----cEEEE----EecCCceeeceeEecCCCEEEEEeeCCEEEEE
Q 002615 553 LKDSDIYLFVGSHSHKFICADAKR----------S----SVLWE----IKLEGRIECSAAVLADFSQVVVGCYKGKIYFL 614 (900)
Q Consensus 553 ~~~~~~~v~igs~~g~l~~~d~~t----------G----~~~w~----~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~ 614 (900)
+..++.++++||.|..|..|.... | ...|+ +..++.-....+.++++.+++.++.|+.|..|
T Consensus 77 ~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 77 FSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIW 156 (942)
T ss_pred ECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEE
Confidence 556788999999999888888762 1 12343 22333333456778888889999999999999
Q ss_pred ECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCC
Q 002615 615 DYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRN 660 (900)
Q Consensus 615 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~ 660 (900)
|..+.+.+-.+..+...+....+++-+.++.+-++|+.|..|+..+
T Consensus 157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d 202 (942)
T KOG0973|consen 157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD 202 (942)
T ss_pred ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccc
Confidence 9999988877777766666667888888888889999999998655
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.018 Score=60.04 Aligned_cols=205 Identities=15% Similarity=0.145 Sum_probs=112.2
Q ss_pred ceeEecCCC-EEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEE--Eeec
Q 002615 592 SAAVLADFS-QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCV--YKLP 668 (900)
Q Consensus 592 ~~~~~~~~~-~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~--w~~~ 668 (900)
++...++.+ .+|+--..+.|+.||+.+|+.. .+..++.+.+...++ .++.|++..+ .++.++.+++..+ +...
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~~~~~~~~~d-~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSPGGFSSGALID-AGGRLIACEH--GVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECCCCcccceeec-CCCeEEEEcc--ccEEEeccCCceeEEeccc
Confidence 455555555 4566667789999998888553 233445554443444 4566665543 4666676666552 2222
Q ss_pred cCCcc---ccCceeeccCCEEEEEeCC------------CcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEE
Q 002615 669 CGGSI---FGSPAIDEVHDVLYVASTS------------GRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICC 733 (900)
Q Consensus 669 ~~~~~---~~~~~~~~~~~~l~v~t~~------------g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~ 733 (900)
..+.. .....+++ .+.+|+++.. |.||.+++. |...-.....-..-...++++++..+|+.
T Consensus 105 ~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~---g~~~~l~~~~~~~~NGla~SpDg~tly~a 180 (307)
T COG3386 105 EDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPD---GGVVRLLDDDLTIPNGLAFSPDGKTLYVA 180 (307)
T ss_pred cCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCC---CCEEEeecCcEEecCceEECCCCCEEEEE
Confidence 22211 22223444 5889998876 457777753 22222111111111355677777777776
Q ss_pred e-ecCcEEEEC-C--CCCEE----eeecCCCceeccccccccCCCeEEEEeeCC--eEEEEeCCCCceeeEEecCCceec
Q 002615 734 L-VDGHVVALD-S--SGSII----WRCRTGGPIFAGPCTSFALPSQVLICSRNG--SIYSFEQESGNLLWEYSVGDPITA 803 (900)
Q Consensus 734 ~-~~g~v~~~d-~--~G~~~----w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg--~l~~~d~~tG~~~w~~~~~~~~~~ 803 (900)
. ..+.++.++ . +|.+- +......+ -.......+.++.+|+....+ .|.+|+++ |+++-++.++....+
T Consensus 181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~-G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t 258 (307)
T COG3386 181 DTPANRIHRYDLDPATGPIGGRRGFVDFDEEP-GLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPT 258 (307)
T ss_pred eCCCCeEEEEecCcccCccCCcceEEEccCCC-CCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCc
Confidence 4 346777776 2 23221 11111000 011122356789999765543 89999998 999988888854444
Q ss_pred ccc
Q 002615 804 SAY 806 (900)
Q Consensus 804 ~~~ 806 (900)
.++
T Consensus 259 ~~~ 261 (307)
T COG3386 259 NPA 261 (307)
T ss_pred cce
Confidence 433
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0099 Score=56.85 Aligned_cols=230 Identities=14% Similarity=0.114 Sum_probs=123.9
Q ss_pred CceEEEEecCCCeEEEEECCCCc---EEEEEecCCceeeceeEec--CCCEEEEEeeCCEEEEEECCCCcEEEEEe----
Q 002615 556 SDIYLFVGSHSHKFICADAKRSS---VLWEIKLEGRIECSAAVLA--DFSQVVVGCYKGKIYFLDYLTGDIYWTFQ---- 626 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~---~~w~~~~~~~~~~~~~~~~--~~~~i~vg~~dg~l~~~d~~tG~~~w~~~---- 626 (900)
.+.+|...+.|+.|..|...+.. .+-++..+......+.... -|+.+...+|||.+..|.-++| .|+..
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g--~w~k~~e~~ 99 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG--RWTKAYEHA 99 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC--chhhhhhhh
Confidence 35677778888888888865533 3333443433323333332 4556777889999999997777 56422
Q ss_pred cCCceeeeeeEeC--CCCEEEEecCCCeEEEEECCCCeEEEee----cc---C-CccccCceeec----------cCCEE
Q 002615 627 TCGEVKCQPVVDA--PRQLIWCGSHDHNLYALDFRNYRCVYKL----PC---G-GSIFGSPAIDE----------VHDVL 686 (900)
Q Consensus 627 ~~~~~~~~~~~~~--~~~~i~~gs~dg~l~~~d~~~g~~~w~~----~~---~-~~~~~~~~~~~----------~~~~l 686 (900)
.+.....+..+.+ .+-.|.+++.||.|..++.++- -.|.. .+ + ..+...|...+ .-.++
T Consensus 100 ~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~-g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krl 178 (299)
T KOG1332|consen 100 AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS-GGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRL 178 (299)
T ss_pred hhcccceeecccccccceEEEEeeCCCcEEEEEEcCC-CCccchhhhhccccccceeeecCcCCCccccccCccccccee
Confidence 2222222223332 2446888999999988876543 11211 11 1 11111221111 02457
Q ss_pred EEEeCCCcEEEEEcCCCCceeeeEeec----CCccee----eeeeeeCCCEEEEEeecCcEEEECCCCC-EEeeecCCCc
Q 002615 687 YVASTSGRLTAISVKALPFHTLWLHEL----EVPAFA----SLCITSANRHVICCLVDGHVVALDSSGS-IIWRCRTGGP 757 (900)
Q Consensus 687 ~v~t~~g~l~~~~~~~~~g~~~w~~~~----~~~~~~----s~~~~~~~~~i~~~~~~g~v~~~d~~G~-~~w~~~~~~~ 757 (900)
..|..|..+..|..++ + .|..+. +..... .|........+..++.||++..+..+.+ .-|+.+.-.+
T Consensus 179 vSgGcDn~VkiW~~~~--~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~ 254 (299)
T KOG1332|consen 179 VSGGCDNLVKIWKFDS--D--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE 254 (299)
T ss_pred eccCCccceeeeecCC--c--chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccccc
Confidence 7788888888888776 4 454332 221111 1222122346788889999999982222 3466554333
Q ss_pred eeccccc---cccCCCeEEEEeeCCeEEEEeCCCCceeeE
Q 002615 758 IFAGPCT---SFALPSQVLICSRNGSIYSFEQESGNLLWE 794 (900)
Q Consensus 758 ~~~~~~~---~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~ 794 (900)
|..++. ....++.|-++..|+.+.+|- ++..=.|+
T Consensus 255 -f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk-e~~~Gkw~ 292 (299)
T KOG1332|consen 255 -FPDVVWRVSWSLSGNILAVSGGDNKVTLWK-ENVDGKWE 292 (299)
T ss_pred -CCcceEEEEEeccccEEEEecCCcEEEEEE-eCCCCcEE
Confidence 111110 122345666677778888886 33443443
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.064 Score=60.84 Aligned_cols=184 Identities=13% Similarity=0.099 Sum_probs=108.0
Q ss_pred EEEecCCCeEEEEECCCCcEEEEEecCC------ceeeceeEecCCCEEEEEeeCCEEEEEECCCC---c------EEEE
Q 002615 560 LFVGSHSHKFICADAKRSSVLWEIKLEG------RIECSAAVLADFSQVVVGCYKGKIYFLDYLTG---D------IYWT 624 (900)
Q Consensus 560 v~igs~~g~l~~~d~~tG~~~w~~~~~~------~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG---~------~~w~ 624 (900)
.....+...++.|+..++. |.....+ ....+..+++++.++.+|..||.|..|. .-| . +.|.
T Consensus 174 ~~~i~~~~~~~~~~v~~~~--~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~-d~~~~~~~~t~t~lHWH 250 (792)
T KOG1963|consen 174 FKGIVHMCKIHIYFVPKHT--KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWR-DFGSSDDSETCTLLHWH 250 (792)
T ss_pred EEEEEEeeeEEEEEecccc--eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEe-ccccccccccceEEEec
Confidence 3333455558888877665 4332221 1124567888988999999999999996 333 1 2343
Q ss_pred EecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCC
Q 002615 625 FQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALP 704 (900)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~ 704 (900)
+.++ ....+..++.+||.|+..+-+..|...+++...--.+++.+... ++.++++...+...|..+..+...+
T Consensus 251 ---~~~V-~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i-~vS~ds~~~sl~~~DNqI~li~~~d-- 323 (792)
T KOG1963|consen 251 ---HDEV-NSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHI-VVSPDSDLYSLVLEDNQIHLIKASD-- 323 (792)
T ss_pred ---cccc-ceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEE-EEcCCCCeEEEEecCceEEEEeccc--
Confidence 1233 34566678899999999999999999998844433444444333 3334455555555677777776533
Q ss_pred ceeeeEeecC-----------CcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeec
Q 002615 705 FHTLWLHELE-----------VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCR 753 (900)
Q Consensus 705 g~~~w~~~~~-----------~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~ 753 (900)
.+..-....- ........+.+.-+.+...+..|.|..|| .+.+.+.++.
T Consensus 324 l~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~ 384 (792)
T KOG1963|consen 324 LEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQ 384 (792)
T ss_pred hhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEE
Confidence 2222221111 11112333444345566666788888888 5555555543
|
|
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0001 Score=83.49 Aligned_cols=88 Identities=19% Similarity=0.351 Sum_probs=56.1
Q ss_pred EecCceEEEcc--CC--cEEEEcccCCcEEECceeeChHHHHHHHhCC-----CCeeEEEEEEeecCCceEEEEEEEEec
Q 002615 220 FRTGDFARRIQ--SG--DLVFLGRKDRTIKINGQRMALEEIEHTLRGH-----PDVVDTAVVSHKHQGELVILVAFIVLK 290 (900)
Q Consensus 220 ~~TGDl~~~~~--~G--~l~~~GR~dd~ik~~G~rv~~~~iE~~l~~~-----~~v~~~~v~~~~~~~~~~~l~~~v~~~ 290 (900)
|+.||+++... ++ .+.|+||.+.++.+.|+++.-.+|+.++.+. -.+.+..+............+.++++.
T Consensus 371 Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~ 450 (528)
T PF03321_consen 371 YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELE 450 (528)
T ss_dssp EEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEEC
T ss_pred eecCCEEEEeeccCCCcEEEEeccCCceeecceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeC
Confidence 99999999742 34 7999999999999999999999999998874 345566665552222223566677776
Q ss_pred CCCCchHHHHHHHHHHHHhhC
Q 002615 291 EKKTSSEIFLSSIKSWVSSKL 311 (900)
Q Consensus 291 ~~~~~~~~~~~~l~~~l~~~l 311 (900)
... ...+.+.+.+.+.|
T Consensus 451 ~~~----~~~~~~~~~lD~~L 467 (528)
T PF03321_consen 451 GEP----DDLEELAKALDESL 467 (528)
T ss_dssp S-H----HHHHHHHHHHHHCS
T ss_pred CCc----hHHHHHHHHHHHHh
Confidence 552 12334444454444
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.036 Score=62.78 Aligned_cols=265 Identities=14% Similarity=0.176 Sum_probs=146.7
Q ss_pred eCCceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCC---CEEEEEeeCCEEEEEECCCCcEEEEEecCCc
Q 002615 554 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADF---SQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE 630 (900)
Q Consensus 554 ~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~---~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~ 630 (900)
+.+..++++-+ ...|..|-..||++.-....+.....+..+.+.. .++|+.+.+|.|..||-..|+++..+..+..
T Consensus 25 SnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~ 103 (792)
T KOG1963|consen 25 SNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLP 103 (792)
T ss_pred ccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCc
Confidence 33455666554 4569999999999876444333322333443322 4678899999999999999999988877655
Q ss_pred eeee---eeEeCCCCEEEEecCCCe-EEEEECCCCeEEEeeccC------C-----ccccCceeeccCCEEEEEeCCCcE
Q 002615 631 VKCQ---PVVDAPRQLIWCGSHDHN-LYALDFRNYRCVYKLPCG------G-----SIFGSPAIDEVHDVLYVASTSGRL 695 (900)
Q Consensus 631 ~~~~---~~~~~~~~~i~~gs~dg~-l~~~d~~~g~~~w~~~~~------~-----~~~~~~~~~~~~~~l~v~t~~g~l 695 (900)
+... |...+..-.++++..+.. ++....+..+....+... + ...-.+..+...+.+.....+..+
T Consensus 104 v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~ 183 (792)
T KOG1963|consen 104 VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKI 183 (792)
T ss_pred eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeE
Confidence 4332 222222333444443322 222222222221111110 0 001122333333433333344557
Q ss_pred EEEEcCCCCceeeeEeec------CCcceeeeeeeeCCCEEEEEeecCcEEEECCCC---C------EEeeecC-CCcee
Q 002615 696 TAISVKALPFHTLWLHEL------EVPAFASLCITSANRHVICCLVDGHVVALDSSG---S------IIWRCRT-GGPIF 759 (900)
Q Consensus 696 ~~~~~~~~~g~~~w~~~~------~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d~~G---~------~~w~~~~-~~~~~ 759 (900)
+.|+... +. |.... +...+....+.+.+..+.+|..+|.|..+...| . .-|.... ..-.+
T Consensus 184 ~~~~v~~--~~--~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~f 259 (792)
T KOG1963|consen 184 HIYFVPK--HT--KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSF 259 (792)
T ss_pred EEEEecc--cc--eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEE
Confidence 7777665 22 22211 111123445566677777888889998887222 1 2254321 11112
Q ss_pred ccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEe
Q 002615 760 AGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 839 (900)
Q Consensus 760 ~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~ 839 (900)
+ ..+..||.|...|.+..|..+|++...=-.+++++....... ++....+...|+.|.++..
T Consensus 260 S------~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~------------ds~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 260 S------SDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSP------------DSDLYSLVLEDNQIHLIKA 321 (792)
T ss_pred e------cCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcC------------CCCeEEEEecCceEEEEec
Confidence 2 235689999999999999999998554445566554433332 2677777888999999877
Q ss_pred ec
Q 002615 840 NL 841 (900)
Q Consensus 840 ~~ 841 (900)
.+
T Consensus 322 ~d 323 (792)
T KOG1963|consen 322 SD 323 (792)
T ss_pred cc
Confidence 43
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.055 Score=60.18 Aligned_cols=221 Identities=12% Similarity=0.088 Sum_probs=117.6
Q ss_pred CeEEEEECCCCcEEEEEecCCceeeceeEecCCCE---EEEEeeC--CEEEEEECCCCcEEEEEecCCceeeeeeEeCCC
Q 002615 567 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQ---VVVGCYK--GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPR 641 (900)
Q Consensus 567 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~---i~vg~~d--g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~ 641 (900)
..|+..|.+.++.. .+........++.+++|+.. +|+...+ ..||..++.+|+..-.....+. ...|.+++++
T Consensus 165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~-~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGN-QLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCC-ccceEECCCC
Confidence 36777787655443 23323333457899999864 3344333 3699999988876543333333 3457788877
Q ss_pred CEEEEec-CCC--eEEE--EECCC---CeEEEeeccCCccccCceeeccCCEEEEEeC-CC--cEEEEEcCCCCceeeeE
Q 002615 642 QLIWCGS-HDH--NLYA--LDFRN---YRCVYKLPCGGSIFGSPAIDEVHDVLYVAST-SG--RLTAISVKALPFHTLWL 710 (900)
Q Consensus 642 ~~i~~gs-~dg--~l~~--~d~~~---g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~g--~l~~~~~~~~~g~~~w~ 710 (900)
..|+..+ .+| .+|. |+..+ |+..............|...+++..|++.+. +| .++.++.....+. .-.
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~-~~~ 321 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS-PRL 321 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc-eEE
Confidence 6665543 222 3444 56554 3333333222234456788877776766553 44 4777766431122 111
Q ss_pred eecCCcceeeeeeeeCCCEEEEEeec---CcEEEEC-CCCCEEeeecCCCceeccccccccCCCeEEEEee---CCeEEE
Q 002615 711 HELEVPAFASLCITSANRHVICCLVD---GHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSR---NGSIYS 783 (900)
Q Consensus 711 ~~~~~~~~~s~~~~~~~~~i~~~~~~---g~v~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~---dg~l~~ 783 (900)
..........+..+++++.++..... ..|+.+| .+|+.. .+.........+.... ++..|++.+. ...||.
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSp-DG~~L~f~~~~~g~~~L~~ 399 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAI-DSLHLVYSAGNSNESELYL 399 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECC-CCCEEEEEECCCCCceEEE
Confidence 22222223456677788877665443 3588889 677653 2221111112222211 2334554432 346888
Q ss_pred EeCCCCcee
Q 002615 784 FEQESGNLL 792 (900)
Q Consensus 784 ~d~~tG~~~ 792 (900)
+|..+|+..
T Consensus 400 vdl~~g~~~ 408 (428)
T PRK01029 400 ISLITKKTR 408 (428)
T ss_pred EECCCCCEE
Confidence 888877654
|
|
| >PF01011 PQQ: PQQ enzyme repeat family | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00025 Score=47.86 Aligned_cols=37 Identities=30% Similarity=0.534 Sum_probs=32.4
Q ss_pred CEEEEecCCCeEEEEECCCCeEEEeeccCCccccCce
Q 002615 642 QLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPA 678 (900)
Q Consensus 642 ~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~ 678 (900)
+.||+++.+|.|+++|.++|+.+|+++.+....+.|+
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~~~~~p~ 37 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKFQTGPPVDSSPI 37 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEEESSSGGGSCBE
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEeeeCCCCCccCcC
Confidence 4689999999999999999999999998877766653
|
; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A .... |
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00042 Score=79.91 Aligned_cols=229 Identities=16% Similarity=0.147 Sum_probs=130.5
Q ss_pred eEEEEecCCCeEEEEECCC---CcE---EEEEec-CCceeeceeEecCCC-EEEEEeeCCEEEEEECCCCcEEEEEe---
Q 002615 558 IYLFVGSHSHKFICADAKR---SSV---LWEIKL-EGRIECSAAVLADFS-QVVVGCYKGKIYFLDYLTGDIYWTFQ--- 626 (900)
Q Consensus 558 ~~v~igs~~g~l~~~d~~t---G~~---~w~~~~-~~~~~~~~~~~~~~~-~i~vg~~dg~l~~~d~~tG~~~w~~~--- 626 (900)
|.|.-|..||.|..||+.. +.. +-++.. .+.+ ...-+....+ .+..|..+|.|+.||..+-+.-.+..
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V-~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~ 159 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPV-LGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQA 159 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCce-eeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCC
Confidence 5566677899999999875 211 111111 2222 2234444433 77888899999999987643322221
Q ss_pred cCCceeeeeeEeCC-CCEEEEecCCCeEEEEECCCCeEEEeeccCCc-c-ccCceeecc-CCEEEEEeCCC---cEEEEE
Q 002615 627 TCGEVKCQPVVDAP-RQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS-I-FGSPAIDEV-HDVLYVASTSG---RLTAIS 699 (900)
Q Consensus 627 ~~~~~~~~~~~~~~-~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~-~-~~~~~~~~~-~~~l~v~t~~g---~l~~~~ 699 (900)
..+.+.+ ..+... ..++..++.+|....||++..+.+-++...+. . .+.....++ ...|++++.+. .+..||
T Consensus 160 ~~~eI~~-lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWD 238 (1049)
T KOG0307|consen 160 PPSEIKC-LSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWD 238 (1049)
T ss_pred CcccceE-eccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeec
Confidence 1112221 112111 12244567788999999988777666544332 2 223333332 24578887654 456677
Q ss_pred cCCCCceeeeEeecCCcceeeeeeeeCC-CEEEEEeecCcEEEEC-CCCCEEeeecCCCc-eeccccccccCCCeEEEEe
Q 002615 700 VKALPFHTLWLHELEVPAFASLCITSAN-RHVICCLVDGHVVALD-SSGSIIWRCRTGGP-IFAGPCTSFALPSQVLICS 776 (900)
Q Consensus 700 ~~~~~g~~~w~~~~~~~~~~s~~~~~~~-~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~-~~~~~~~~~~~~~~l~~g~ 776 (900)
++.. -.++..+..+.....+...+..+ ..++.+..|+.++|++ .+|+++.++...+. .+... ..--..+.+-+.+
T Consensus 239 lR~a-ssP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~-w~pr~P~~~A~as 316 (1049)
T KOG0307|consen 239 LRFA-SSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQ-WCPRNPSVMAAAS 316 (1049)
T ss_pred cccc-CCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeee-ecCCCcchhhhhe
Confidence 5431 22333344444444555555555 6777888899999999 99999988876443 22111 1111223455667
Q ss_pred eCCeEEEEeCCCCc
Q 002615 777 RNGSIYSFEQESGN 790 (900)
Q Consensus 777 ~dg~l~~~d~~tG~ 790 (900)
-+|.|-.+...++.
T Consensus 317 fdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 317 FDGKISIYSLQGTD 330 (1049)
T ss_pred eccceeeeeeecCC
Confidence 78888888876553
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.14 Score=56.64 Aligned_cols=173 Identities=10% Similarity=0.012 Sum_probs=102.1
Q ss_pred CeEEEEECCCCcEEEEEecCCceeeceeEecCCCE-EEEEeeC---CEEEEEECCCCcEEEEEecCCceeeeeeEeCCCC
Q 002615 567 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQ-VVVGCYK---GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQ 642 (900)
Q Consensus 567 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~-i~vg~~d---g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~ 642 (900)
..|+..|.+..... .+...+ ...++.++++++. ++..+++ ..||.+|..+|+........+ ....+.+.+++.
T Consensus 169 ~~l~~~d~dg~~~~-~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g-~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTYQK-VIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQG-MLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCcee-EEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCC-cEEeeEECCCCC
Confidence 35666665433222 222233 4557899999885 6665554 469999999998765444333 334466777766
Q ss_pred EEEEe-cC--CCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCC-C--cEEEEEcCCCCceeeeEeecCCc
Q 002615 643 LIWCG-SH--DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS-G--RLTAISVKALPFHTLWLHELEVP 716 (900)
Q Consensus 643 ~i~~g-s~--dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~-g--~l~~~~~~~~~g~~~w~~~~~~~ 716 (900)
.|++. +. +..||.+|..+|+...-.. .......|...+++..|++.+.. | .||.+|+++ |+..- ......
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~~LT~-~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~--g~~~r-lt~~g~ 321 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLTQITN-YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS--GSVEQ-VVFHGK 321 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEEEccc-CCCccCccEECCCCCEEEEEECCCCCceEEEEECCC--CCeEe-CccCCC
Confidence 65543 32 3579999998886543222 22244567777777788887643 2 688999876 54311 111111
Q ss_pred ceeeeeeeeCCCEEEEEeec---------CcEEEEC-CCCCE
Q 002615 717 AFASLCITSANRHVICCLVD---------GHVVALD-SSGSI 748 (900)
Q Consensus 717 ~~~s~~~~~~~~~i~~~~~~---------g~v~~~d-~~G~~ 748 (900)
. ...++++++.++..... ..|+.+| .+|+.
T Consensus 322 -~-~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 322 -N-NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred -c-CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence 1 23566677766554432 3678888 66653
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.19 Score=53.03 Aligned_cols=227 Identities=10% Similarity=0.026 Sum_probs=103.9
Q ss_pred CceEEEEecCC--CeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceee
Q 002615 556 SDIYLFVGSHS--HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 633 (900)
Q Consensus 556 ~~~~v~igs~~--g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 633 (900)
++..||.+..+ .+++.+|+.||+..--....+......++++++..+|--..+..|+.+|++|++..-.+..+...+.
T Consensus 47 G~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g 126 (386)
T PF14583_consen 47 GRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKG 126 (386)
T ss_dssp S-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEE
T ss_pred CCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCccccc
Confidence 34456655544 4799999999998755554433223567777767764433345899999999988777777666553
Q ss_pred eeeE-eCCCCEEEEec-----------------------CCCeEEEEECCCCeEEEeeccC---CccccCceeeccCCEE
Q 002615 634 QPVV-DAPRQLIWCGS-----------------------HDHNLYALDFRNYRCVYKLPCG---GSIFGSPAIDEVHDVL 686 (900)
Q Consensus 634 ~~~~-~~~~~~i~~gs-----------------------~dg~l~~~d~~~g~~~w~~~~~---~~~~~~~~~~~~~~~l 686 (900)
.... ...++..++|. -...|+.+|+++|+..-.+.-. +.+..+|.-. +.|
T Consensus 127 ~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp---~li 203 (386)
T PF14583_consen 127 YGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDP---TLI 203 (386)
T ss_dssp EEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEE---EEE
T ss_pred ccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCC---CEE
Confidence 2222 23334445441 1246888999998754333221 2333344321 333
Q ss_pred EEEeC------CCcEEEEEcCCCCceeeeEeecCCccee--eeeeeeCCCEEEEEee-----cCcEEEEC-CCCCEEeee
Q 002615 687 YVAST------SGRLTAISVKALPFHTLWLHELEVPAFA--SLCITSANRHVICCLV-----DGHVVALD-SSGSIIWRC 752 (900)
Q Consensus 687 ~v~t~------~g~l~~~~~~~~~g~~~w~~~~~~~~~~--s~~~~~~~~~i~~~~~-----~g~v~~~d-~~G~~~w~~ 752 (900)
.++-. +.++..++.+ |+..|......+... .--...++..++.-+. +..|+.+| .+++..|-.
T Consensus 204 ~fCHEGpw~~Vd~RiW~i~~d---g~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~ 280 (386)
T PF14583_consen 204 MFCHEGPWDLVDQRIWTINTD---GSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM 280 (386)
T ss_dssp EEEE-S-TTTSS-SEEEEETT---S---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE
T ss_pred EEeccCCcceeceEEEEEEcC---CCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE
Confidence 33321 3356666644 555565543332221 1223455655554332 23577788 777665433
Q ss_pred cCCCceeccccccccCCCeEEEEeeCC-----------------eEEEEeCCCCcee
Q 002615 753 RTGGPIFAGPCTSFALPSQVLICSRNG-----------------SIYSFEQESGNLL 792 (900)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~l~~g~~dg-----------------~l~~~d~~tG~~~ 792 (900)
..+. ++ -.....++.+++|...+ .||.++.+.+...
T Consensus 281 ~~p~---~~-H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~ 333 (386)
T PF14583_consen 281 EMPW---CS-HFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR 333 (386)
T ss_dssp EE-S---EE-EEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE
T ss_pred eCCc---ee-eeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee
Confidence 3221 11 11122467787774322 4666777766643
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.011 Score=60.45 Aligned_cols=185 Identities=11% Similarity=0.038 Sum_probs=104.9
Q ss_pred CceEEEEecCCCeEEEEECCCCcEEE-------EEecCCceeeceeEec-CCCEEEEEeeCCEEEEEECCCCcEEEEEec
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLW-------EIKLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDIYWTFQT 627 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~~~w-------~~~~~~~~~~~~~~~~-~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~ 627 (900)
.+..|..||.|..+..|..-.+-... .+..+.+-...+...+ ..+.+...+.|..+..||..||+.+-+...
T Consensus 93 nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~h 172 (472)
T KOG0303|consen 93 NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDH 172 (472)
T ss_pred CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCC
Confidence 46678888999999999854332211 1222222111122222 123456667789999999999999888774
Q ss_pred CCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccc-cCceeeccCCEEEEEe----CCCcEEEEEcCC
Q 002615 628 CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIF-GSPAIDEVHDVLYVAS----TSGRLTAISVKA 702 (900)
Q Consensus 628 ~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~-~~~~~~~~~~~l~v~t----~~g~l~~~~~~~ 702 (900)
++.+ .+..+..++..+.+.+.|..|..||+.+|++++....+...- .-.++.. ++.++... .+..+-.||+++
T Consensus 173 pd~i-~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 173 PDMV-YSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA-SGKIFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred CCeE-EEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec-cCceeeeccccccccceeccCccc
Confidence 4444 445566667788888999999999999999999874433222 2222222 23333322 234455666554
Q ss_pred CC-ceeeeEeecCCcceeeeeeeeCCCEEEEEee-cCcEEEEC
Q 002615 703 LP-FHTLWLHELEVPAFASLCITSANRHVICCLV-DGHVVALD 743 (900)
Q Consensus 703 ~~-g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~-~g~v~~~d 743 (900)
.+ .-.+...+.+.. ..-+-...+.+.+|.++. |+.|..|.
T Consensus 251 l~eP~~~~elDtSnG-vl~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 251 LEEPIALQELDTSNG-VLLPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred ccCcceeEEeccCCc-eEEeeecCCCCEEEEEecCCcceEEEE
Confidence 11 001111221111 122233445667777664 56676666
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.095 Score=64.88 Aligned_cols=247 Identities=16% Similarity=0.181 Sum_probs=125.1
Q ss_pred eeEecCCCEEEEEe-eCCEEEEEECCCCcEEEEEecCCc--------------eeeeeeEeCCCCEEEEecC-CCeEEEE
Q 002615 593 AAVLADFSQVVVGC-YKGKIYFLDYLTGDIYWTFQTCGE--------------VKCQPVVDAPRQLIWCGSH-DHNLYAL 656 (900)
Q Consensus 593 ~~~~~~~~~i~vg~-~dg~l~~~d~~tG~~~w~~~~~~~--------------~~~~~~~~~~~~~i~~gs~-dg~l~~~ 656 (900)
..++..++.+||.. .++.|+.+|. +|...-.+...+. .....+++.+++.||++.. ++.|..+
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~-~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~i 651 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDL-DGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREI 651 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeC-CCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEE
Confidence 44554456677764 4667888885 4555433322110 1123345555677888654 4678889
Q ss_pred ECCCCeEEEeecc--------CC-----ccccC---ceeeccCCEEEEEe-CCCcEEEEEcCCCCceeeeEeecC-----
Q 002615 657 DFRNYRCVYKLPC--------GG-----SIFGS---PAIDEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHELE----- 714 (900)
Q Consensus 657 d~~~g~~~w~~~~--------~~-----~~~~~---~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~~----- 714 (900)
|..++...-.... ++ ..... .++++.++.+|++. .++.++.+|..+ |........+
T Consensus 652 d~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~--g~v~~~~G~G~~~~~ 729 (1057)
T PLN02919 652 DFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISD--GVTRVFSGDGYERNL 729 (1057)
T ss_pred ecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCC--CeEEEEecCCccccC
Confidence 9887754321110 00 01222 35555467888875 467888898776 4332110000
Q ss_pred -C-----cce---eeeeeeeCCCEEEEEe-ecCcEEEEC-CCCCEEeeecC-----------C---C----ceeccc-cc
Q 002615 715 -V-----PAF---ASLCITSANRHVICCL-VDGHVVALD-SSGSIIWRCRT-----------G---G----PIFAGP-CT 764 (900)
Q Consensus 715 -~-----~~~---~s~~~~~~~~~i~~~~-~~g~v~~~d-~~G~~~w~~~~-----------~---~----~~~~~~-~~ 764 (900)
. ..+ ....+..+++.+|++. .++.|..+| .+|...+.... + + ..+..| .+
T Consensus 730 ~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv 809 (1057)
T PLN02919 730 NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV 809 (1057)
T ss_pred CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence 0 001 1234555667677765 457899999 66654332110 0 0 011122 22
Q ss_pred cccCCCeEEEEe-eCCeEEEEeCCCCceeeEEecCCceecc-ccccccccc-ccccccCCCeEEEEEcCCCcEEEEEeec
Q 002615 765 SFALPSQVLICS-RNGSIYSFEQESGNLLWEYSVGDPITAS-AYIDEHLQL-KLESCLSIDRLVCICTSSGSIHILRVNL 841 (900)
Q Consensus 765 ~~~~~~~l~~g~-~dg~l~~~d~~tG~~~w~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~l~~g~~~G~v~~~d~~~ 841 (900)
..+.++.+|++. .++.|..||.+++.+......+...+.. ......+.. .+.....++..+++.+.++.|++||.++
T Consensus 810 avd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 810 LCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred eEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 334566788874 5778999999888766433222110000 000000000 0001112244444445678899999987
Q ss_pred C
Q 002615 842 D 842 (900)
Q Consensus 842 ~ 842 (900)
+
T Consensus 890 ~ 890 (1057)
T PLN02919 890 G 890 (1057)
T ss_pred C
Confidence 6
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0003 Score=76.84 Aligned_cols=156 Identities=12% Similarity=0.053 Sum_probs=109.7
Q ss_pred eeCCceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCcee
Q 002615 553 LKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK 632 (900)
Q Consensus 553 ~~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~ 632 (900)
++-....|-.|+.+|.|..||+..++....+..+.....+..+.+-+.+...|+.|+.+..||.+..-....+..+..+.
T Consensus 78 f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv 157 (825)
T KOG0267|consen 78 FDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVV 157 (825)
T ss_pred cCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCccee
Confidence 33456678889999999999999998876655544334455677766556668889999999987444555666666666
Q ss_pred eeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeE
Q 002615 633 CQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWL 710 (900)
Q Consensus 633 ~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~ 710 (900)
-...+.+++..+..|+.|..+..||...|+..-.|+.+..-..++-..+.+-.+--|+.++.+..||+++ .+.+-+
T Consensus 158 ~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet--fe~I~s 233 (825)
T KOG0267|consen 158 DVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET--FEVISS 233 (825)
T ss_pred EEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccce--eEEeec
Confidence 6777888888888899999999999999999877774322222222333222344567788899999876 444433
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.025 Score=56.23 Aligned_cols=278 Identities=9% Similarity=0.084 Sum_probs=131.1
Q ss_pred eeceeEecCCCEEEEEeeCCEEEEEECCCCcEEE----EEecCCceeeeeeEeCCCCEEEEecC-CCeEEEEECC---CC
Q 002615 590 ECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYW----TFQTCGEVKCQPVVDAPRQLIWCGSH-DHNLYALDFR---NY 661 (900)
Q Consensus 590 ~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w----~~~~~~~~~~~~~~~~~~~~i~~gs~-dg~l~~~d~~---~g 661 (900)
.+..+++.+|.++...|.|+.|..|+.++=...- +...+-.-.+..++.++-.-+++... ...|+.|-.. +|
T Consensus 89 vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG 168 (420)
T KOG2096|consen 89 VTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDG 168 (420)
T ss_pred eeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccC
Confidence 4577899999999999999999999977632210 11111112233345544343443333 3356665432 12
Q ss_pred eEEEee-ccC----CccccCc----eeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEE
Q 002615 662 RCVYKL-PCG----GSIFGSP----AIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVIC 732 (900)
Q Consensus 662 ~~~w~~-~~~----~~~~~~~----~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~ 732 (900)
..-..+ ..+ ......+ -+.+....|..++.+..+..|+++ |+.+-+.+.........++++++..+.+
T Consensus 169 ~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk---Gq~L~~idtnq~~n~~aavSP~GRFia~ 245 (420)
T KOG2096|consen 169 SGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK---GQLLQSIDTNQSSNYDAAVSPDGRFIAV 245 (420)
T ss_pred CCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC---CceeeeeccccccccceeeCCCCcEEEE
Confidence 211100 000 0001111 122222345556667778888876 6777666554433334455556666665
Q ss_pred EeecCcEEEEC----CCCCE-----EeeecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEEecCCce--
Q 002615 733 CLVDGHVVALD----SSGSI-----IWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPI-- 801 (900)
Q Consensus 733 ~~~~g~v~~~d----~~G~~-----~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~-- 801 (900)
+...--+.+|. ++|+. +++++.........+. .....++...+.||.+..||.+ +.++..-+..+
T Consensus 246 ~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aF-sn~S~r~vtvSkDG~wriwdtd---VrY~~~qDpk~Lk 321 (420)
T KOG2096|consen 246 SGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAF-SNSSTRAVTVSKDGKWRIWDTD---VRYEAGQDPKILK 321 (420)
T ss_pred ecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeee-CCCcceeEEEecCCcEEEeecc---ceEecCCCchHhh
Confidence 55444454443 34432 1222211110111111 1124578888999999999964 22211111100
Q ss_pred -eccccccc---ccccccccccCCCeEEEEEcCCCcEEEEEeecCcccccccccccceeeeee-eccCCccccCcee-eC
Q 002615 802 -TASAYIDE---HLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAK-LELQGDIFSSPVM-IG 875 (900)
Q Consensus 802 -~~~~~~~~---~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~ss~~~-~~ 875 (900)
...|..+. -..| ...+++..++ .+....|.+|..++|. .... -+.++..+++... .+
T Consensus 322 ~g~~pl~aag~~p~RL---~lsP~g~~lA-~s~gs~l~~~~se~g~-------------~~~~~e~~h~~~Is~is~~~~ 384 (420)
T KOG2096|consen 322 EGSAPLHAAGSEPVRL---ELSPSGDSLA-VSFGSDLKVFASEDGK-------------DYPELEDIHSTTISSISYSSD 384 (420)
T ss_pred cCCcchhhcCCCceEE---EeCCCCcEEE-eecCCceEEEEcccCc-------------cchhHHHhhcCceeeEEecCC
Confidence 00011000 0000 0122344443 3444567778776651 1111 1234444555444 35
Q ss_pred CEEEEeeeCCeEEEEE
Q 002615 876 GRVFVGCRDDYIYCIA 891 (900)
Q Consensus 876 ~~l~vg~~dg~l~~ld 891 (900)
|+..+.|.|.++..+.
T Consensus 385 g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 385 GKYIATCGDRYVRVIR 400 (420)
T ss_pred CcEEeeecceeeeeec
Confidence 6777777788777765
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.13 Score=51.53 Aligned_cols=277 Identities=18% Similarity=0.238 Sum_probs=135.0
Q ss_pred eeEecCCCEEEEEeeCC-EEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCC------CeEEEEECCCCeEEE
Q 002615 593 AAVLADFSQVVVGCYKG-KIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD------HNLYALDFRNYRCVY 665 (900)
Q Consensus 593 ~~~~~~~~~i~vg~~dg-~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~d------g~l~~~d~~~g~~~w 665 (900)
+.+..|.+-..++..+| .||-.|+-.-...-++..++ ....-++...+-..++|+.+ ..|..||-...+++-
T Consensus 11 vs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G-~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~ 89 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGG-FKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCII 89 (346)
T ss_pred EEEccCCceEEEEecCceEEEecCchhhhhhhccccCc-hhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEEE
Confidence 45555555566666655 34444431111111222222 22222222222333455433 468999866667776
Q ss_pred eeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeC-CCEEEE--EeecCcEEEE
Q 002615 666 KLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSA-NRHVIC--CLVDGHVVAL 742 (900)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~-~~~i~~--~~~~g~v~~~ 742 (900)
.+...+.+.+ ..+. .++|++... +.++.|...+. -+.+...+...+.-.-.+++.. +..+++ |..-|.|...
T Consensus 90 el~f~~~I~~-V~l~--r~riVvvl~-~~I~VytF~~n-~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~ 164 (346)
T KOG2111|consen 90 ELSFNSEIKA-VKLR--RDRIVVVLE-NKIYVYTFPDN-PKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIV 164 (346)
T ss_pred EEEeccceee-EEEc--CCeEEEEec-CeEEEEEcCCC-hhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEE
Confidence 6655555443 2233 366666654 56888876531 3334333332211111111111 111111 2233555555
Q ss_pred C-CCCCEE--eeecCCCceeccccccccCCCeE-EEEeeCCe-EEEEeCCCCceeeEEecCC---ceecccccccccccc
Q 002615 743 D-SSGSII--WRCRTGGPIFAGPCTSFALPSQV-LICSRNGS-IYSFEQESGNLLWEYSVGD---PITASAYIDEHLQLK 814 (900)
Q Consensus 743 d-~~G~~~--w~~~~~~~~~~~~~~~~~~~~~l-~~g~~dg~-l~~~d~~tG~~~w~~~~~~---~~~~~~~~~~~~~~~ 814 (900)
| ..-+.- -.+.... ....|+....+|.+ ..++..|+ |+.||..+|+++-++.-+. .++...+..+
T Consensus 165 dL~~~~~~~p~~I~AH~--s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~----- 237 (346)
T KOG2111|consen 165 DLASTKPNAPSIINAHD--SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN----- 237 (346)
T ss_pred EhhhcCcCCceEEEccc--CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC-----
Confidence 5 211110 0011100 11123333345554 44566776 5789999999998876554 3455444433
Q ss_pred cccccCCCeEEEEEcCCCcEEEEEeecCccccc---------ccccccc--eeeeeeeccCCccccCcee----eC-CEE
Q 002615 815 LESCLSIDRLVCICTSSGSIHILRVNLDVTGKE---------NQSKDHM--VQEFAKLELQGDIFSSPVM----IG-GRV 878 (900)
Q Consensus 815 ~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~~~~---------~~~~~~~--~~~~~~~~l~~~~~ss~~~----~~-~~l 878 (900)
..++++.++.|+|++|..+....... .+..+.. .+.++++.++.. ++.+ .+ +.+
T Consensus 238 -------~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~---~~~~~~fg~~~nsv 307 (346)
T KOG2111|consen 238 -------SSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQG---TQCIIAFGSETNTV 307 (346)
T ss_pred -------ccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCC---CcEEEEecCCCCeE
Confidence 78999999999999998876432222 0111111 233344555532 2222 23 678
Q ss_pred EEeeeCCeEEEEEc
Q 002615 879 FVGCRDDYIYCIAL 892 (900)
Q Consensus 879 ~vg~~dg~l~~ld~ 892 (900)
.+-|.||..|.+..
T Consensus 308 i~i~~Dgsy~k~~f 321 (346)
T KOG2111|consen 308 IAICADGSYYKFKF 321 (346)
T ss_pred EEEEeCCcEEEEEe
Confidence 88888988886643
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.029 Score=52.73 Aligned_cols=190 Identities=16% Similarity=0.204 Sum_probs=120.2
Q ss_pred ceEEEEecCCCeEEE--EECCCCcEE---EEEecCCceeeceeEecC---CCEEEE--EeeCCEEEEEECCCCcEEEEEe
Q 002615 557 DIYLFVGSHSHKFIC--ADAKRSSVL---WEIKLEGRIECSAAVLAD---FSQVVV--GCYKGKIYFLDYLTGDIYWTFQ 626 (900)
Q Consensus 557 ~~~v~igs~~g~l~~--~d~~tG~~~---w~~~~~~~~~~~~~~~~~---~~~i~v--g~~dg~l~~~d~~tG~~~w~~~ 626 (900)
+..+..||.|..|.. ||.+|.+.. -++..++....-.++.++ ++.|.+ |..|-.||.-|-.+|+....+.
T Consensus 101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 556667777776554 444443221 134444432223344322 334444 3345678888888887766554
Q ss_pred cCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeecc----CC---ccccCceeeccCCEEEEEeCCCcEEEEE
Q 002615 627 TCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC----GG---SIFGSPAIDEVHDVLYVASTSGRLTAIS 699 (900)
Q Consensus 627 ~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~----~~---~~~~~~~~~~~~~~l~v~t~~g~l~~~~ 699 (900)
.+..-.-. .+.-++-.+..|+.|.++..||+.-..++..... +| .-..+.++++.+..+..|-.+.....||
T Consensus 181 ghtghila-lyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lyd 259 (350)
T KOG0641|consen 181 GHTGHILA-LYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYD 259 (350)
T ss_pred CCcccEEE-EEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence 43322221 2222345567789999999999987767665433 22 3345567777666667777888899999
Q ss_pred cCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEECCCCCEE
Q 002615 700 VKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSII 749 (900)
Q Consensus 700 ~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d~~G~~~ 749 (900)
+.. |..+.++..+...+.+..+.+.-.++..+++|..|..-|-.|.+.
T Consensus 260 irg--~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla 307 (350)
T KOG0641|consen 260 IRG--GRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLA 307 (350)
T ss_pred eeC--CceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchh
Confidence 997 888888877766666777777777899999998888877556553
|
|
| >PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0011 Score=56.02 Aligned_cols=87 Identities=22% Similarity=0.266 Sum_probs=51.9
Q ss_pred ceeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCc----hHHHHHHHHHHHHhhCCCCccCCEEEEc
Q 002615 248 GQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTS----SEIFLSSIKSWVSSKLPLAMIPNRFVFM 323 (900)
Q Consensus 248 G~rv~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~~~v~~~~~~~~----~~~~~~~l~~~l~~~l~~~~~P~~~~~v 323 (900)
|.+|+|..||++|.++|++.....+.....+....+...++..+.... .+.+.++|++.+++.+.-- .--.++..
T Consensus 1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv~-~~V~lv~~ 79 (96)
T PF14535_consen 1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGVR-PEVELVPP 79 (96)
T ss_dssp TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS--EEEEEE-T
T ss_pred CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCce-EEEEEECC
Confidence 789999999999999999994433333333455667777888775432 2445567777777776532 12233444
Q ss_pred CCcCCCCCCCcch
Q 002615 324 DSLPMTSSGKVDY 336 (900)
Q Consensus 324 ~~lP~t~~GKidr 336 (900)
.+||++ .||..|
T Consensus 80 gtLpr~-~~K~~R 91 (96)
T PF14535_consen 80 GTLPRS-EGKAKR 91 (96)
T ss_dssp T-S----SSSS-S
T ss_pred CCccCC-CCcceE
Confidence 569997 578665
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.04 Score=56.15 Aligned_cols=170 Identities=18% Similarity=0.156 Sum_probs=117.4
Q ss_pred eEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecC-CceeeeeeEeCCCC--EE
Q 002615 568 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC-GEVKCQPVVDAPRQ--LI 644 (900)
Q Consensus 568 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~--~i 644 (900)
.+..++.+.+..+-++..+..+. .+--+.++++|.= ...||.+|..+-+++.++..- .......++..... ++
T Consensus 69 ~Lkv~~~Kk~~~ICe~~fpt~IL---~VrmNr~RLvV~L-ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~yl 144 (391)
T KOG2110|consen 69 KLKVVHFKKKTTICEIFFPTSIL---AVRMNRKRLVVCL-EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYL 144 (391)
T ss_pred eEEEEEcccCceEEEEecCCceE---EEEEccceEEEEE-cccEEEEecccceeehhhhccCCCccceEeeccCCCCceE
Confidence 47777877777776666665542 3333445666654 455999999999998876653 22232333333332 33
Q ss_pred E-Eec-CCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEE-EEcCCCCceeeeEeecCCcc--ee
Q 002615 645 W-CGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTA-ISVKALPFHTLWLHELEVPA--FA 719 (900)
Q Consensus 645 ~-~gs-~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~-~~~~~~~g~~~w~~~~~~~~--~~ 719 (900)
. -++ ..|.|+.||..+-+.+-.+..+....+..++..++..|..++..|++.+ +...+ |+.+.++..+... +.
T Consensus 145 Ayp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~--G~kl~eFRRG~~~~~Iy 222 (391)
T KOG2110|consen 145 AYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE--GQKLYEFRRGTYPVSIY 222 (391)
T ss_pred EecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC--ccEeeeeeCCceeeEEE
Confidence 2 233 3588999999998888888888888888889887888888999997765 56665 8888887665432 34
Q ss_pred eeeeeeCCCEEEEEeecCcEEEEC
Q 002615 720 SLCITSANRHVICCLVDGHVVALD 743 (900)
Q Consensus 720 s~~~~~~~~~i~~~~~~g~v~~~d 743 (900)
+.++..+...+.+.+..++|++|.
T Consensus 223 SL~Fs~ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 223 SLSFSPDSQFLAASSNTETVHIFK 246 (391)
T ss_pred EEEECCCCCeEEEecCCCeEEEEE
Confidence 666777777777777778888876
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0058 Score=67.75 Aligned_cols=187 Identities=12% Similarity=0.071 Sum_probs=103.6
Q ss_pred eCCceEEEEecCCCeEEEEECCCCcEEEEEecCCc--e-eeceeE---ecCCCEEEEEeeCCEEEEEECCC---CcEEEE
Q 002615 554 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR--I-ECSAAV---LADFSQVVVGCYKGKIYFLDYLT---GDIYWT 624 (900)
Q Consensus 554 ~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~--~-~~~~~~---~~~~~~i~vg~~dg~l~~~d~~t---G~~~w~ 624 (900)
.+..+.+.+|-.--.||+++...-.+.-....+.+ . ++..-+ ..+.+.|++.+.+|.|.+||+.. .+++..
T Consensus 49 r~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~ 128 (839)
T KOG0269|consen 49 RDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTV 128 (839)
T ss_pred CCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccccchhhhH
Confidence 34445555554444577777664433222221211 1 111111 12334688888899999999765 333333
Q ss_pred EecCCceeeeeeEeC-CCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeecc-CCEEEEEeCCCcEEEEEcCC
Q 002615 625 FQTCGEVKCQPVVDA-PRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEV-HDVLYVASTSGRLTAISVKA 702 (900)
Q Consensus 625 ~~~~~~~~~~~~~~~-~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~-~~~l~v~t~~g~l~~~~~~~ 702 (900)
|.-+........+.. ...+|+.|+.||.+.+||++..+-.-.+.......-...+.+. ++....+..+|.|..||++.
T Consensus 129 f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRq 208 (839)
T KOG0269|consen 129 FNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQ 208 (839)
T ss_pred hhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccC
Confidence 333333222222222 3477889999999999999876554444332211111112221 34555566788999999874
Q ss_pred CCceeeeEe--ecCCcceeeeeeeeCCCEEEEEeecCcEEEEC
Q 002615 703 LPFHTLWLH--ELEVPAFASLCITSANRHVICCLVDGHVVALD 743 (900)
Q Consensus 703 ~~g~~~w~~--~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d 743 (900)
-..|.. ..+..........++...+..|+.|+.+.+||
T Consensus 209 ---p~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 209 ---PDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred ---chhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 223332 23333334555666667777888899999998
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.091 Score=58.04 Aligned_cols=181 Identities=10% Similarity=-0.012 Sum_probs=104.5
Q ss_pred EEEecC---CCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEee---CCEEEEEECCCCcEEEEEecCCceee
Q 002615 560 LFVGSH---SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY---KGKIYFLDYLTGDIYWTFQTCGEVKC 633 (900)
Q Consensus 560 v~igs~---~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~---dg~l~~~d~~tG~~~w~~~~~~~~~~ 633 (900)
++..+. ...||.+|..+|+..--....+. ...+.+++|+..+++... +..||.+|..+|+..- .........
T Consensus 203 i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~-~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~~~d~ 280 (419)
T PRK04043 203 FYYTSYGERKPTLYKYNLYTGKKEKIASSQGM-LVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYPGIDV 280 (419)
T ss_pred EEEEEccCCCCEEEEEECCCCcEEEEecCCCc-EEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE-cccCCCccC
Confidence 555443 34799999999987544433332 335678999887766532 3579999988886532 222222345
Q ss_pred eeeEeCCCCEEEEecCC---CeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCC---------CcEEEEEcC
Q 002615 634 QPVVDAPRQLIWCGSHD---HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS---------GRLTAISVK 701 (900)
Q Consensus 634 ~~~~~~~~~~i~~gs~d---g~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~---------g~l~~~~~~ 701 (900)
.+.+.+++..|+..+.. ..||.+|..+|+....... +.. .+..+++++.|.+.+.. ..++.+|++
T Consensus 281 ~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~ 357 (419)
T PRK04043 281 NGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTN 357 (419)
T ss_pred ccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECC
Confidence 67788887777776532 2699999998876433222 221 23566656666554432 368888877
Q ss_pred CCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecC---cEEEECCCCCEE
Q 002615 702 ALPFHTLWLHELEVPAFASLCITSANRHVICCLVDG---HVVALDSSGSII 749 (900)
Q Consensus 702 ~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g---~v~~~d~~G~~~ 749 (900)
+ |.. ...... .....+.+.+++..++..+..+ .++.++.+|...
T Consensus 358 ~--g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~ 404 (419)
T PRK04043 358 S--DYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKS 404 (419)
T ss_pred C--CCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCee
Confidence 6 432 122222 1223456666666665554322 244444444433
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.054 Score=53.96 Aligned_cols=271 Identities=13% Similarity=0.111 Sum_probs=145.8
Q ss_pred eeCCceEEEEecCCCeEEEEECCCCcEEE----EEecCCceeeceeEecCCCEEEEEeeCC-EEEEEEC--C-CCcE---
Q 002615 553 LKDSDIYLFVGSHSHKFICADAKRSSVLW----EIKLEGRIECSAAVLADFSQVVVGCYKG-KIYFLDY--L-TGDI--- 621 (900)
Q Consensus 553 ~~~~~~~v~igs~~g~l~~~d~~tG~~~w----~~~~~~~~~~~~~~~~~~~~i~vg~~dg-~l~~~d~--~-tG~~--- 621 (900)
+..++.++...+.|+.|..||.++=...- +..++-...+.+.+.+|-.-+++.+..| .||+|.. + +|..
T Consensus 94 FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~ 173 (420)
T KOG2096|consen 94 FSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHH 173 (420)
T ss_pred EcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcc
Confidence 44456777888889999999987622110 0111111223456777766677766554 4665542 2 2332
Q ss_pred --EEE---Eec-CCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcE
Q 002615 622 --YWT---FQT-CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRL 695 (900)
Q Consensus 622 --~w~---~~~-~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l 695 (900)
.|. |.- +.......-+.+...+|..++.|..|..|+.+ |+.+..++.........++++++..|.++...-.+
T Consensus 174 ~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDV 252 (420)
T KOG2096|consen 174 FVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDV 252 (420)
T ss_pred cccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCc
Confidence 121 110 01111112233345566778888899999988 88887777655444555666655556665555556
Q ss_pred EEEEcC-CCCce-----eeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEECCCCCEEeeec-------CC-Cc---e
Q 002615 696 TAISVK-ALPFH-----TLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCR-------TG-GP---I 758 (900)
Q Consensus 696 ~~~~~~-~~~g~-----~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d~~G~~~w~~~-------~~-~~---~ 758 (900)
..|.+- +..|+ ...+.+.+.......++..+..+++..+.||....||.+ +.+... .+ .+ .
T Consensus 253 kVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd--VrY~~~qDpk~Lk~g~~pl~aa 330 (420)
T KOG2096|consen 253 KVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD--VRYEAGQDPKILKEGSAPLHAA 330 (420)
T ss_pred eEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc--ceEecCCCchHhhcCCcchhhc
Confidence 666531 11132 222333333334556677777889999999999988732 112111 11 00 0
Q ss_pred ecccc-ccccCCCeEEEEeeCCeEEEEeCCCCceeeEEe-cCCceecccccccccccccccccCCCeEEEEEcCCCcEEE
Q 002615 759 FAGPC-TSFALPSQVLICSRNGSIYSFEQESGNLLWEYS-VGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHI 836 (900)
Q Consensus 759 ~~~~~-~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~ 836 (900)
-+.|+ .....++.++..+....|..|..++|+..-.++ .++.-++....+. .+.+++.++ |..+.+
T Consensus 331 g~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-----------~g~~~atcG-dr~vrv 398 (420)
T KOG2096|consen 331 GSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSS-----------DGKYIATCG-DRYVRV 398 (420)
T ss_pred CCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecC-----------CCcEEeeec-ceeeee
Confidence 11221 112235677777777788888888887653322 2222223222222 255555554 556777
Q ss_pred EE
Q 002615 837 LR 838 (900)
Q Consensus 837 ~d 838 (900)
+.
T Consensus 399 ~~ 400 (420)
T KOG2096|consen 399 IR 400 (420)
T ss_pred ec
Confidence 64
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.27 Score=50.36 Aligned_cols=237 Identities=13% Similarity=0.141 Sum_probs=127.7
Q ss_pred eeCCceEEEEecCC---CeE--EEEECCCCcEEE--EEecCCceeeceeEecCCCEEEEEeeCC-EEEEEECC-CCcEEE
Q 002615 553 LKDSDIYLFVGSHS---HKF--ICADAKRSSVLW--EIKLEGRIECSAAVLADFSQVVVGCYKG-KIYFLDYL-TGDIYW 623 (900)
Q Consensus 553 ~~~~~~~v~igs~~---g~l--~~~d~~tG~~~w--~~~~~~~~~~~~~~~~~~~~i~vg~~dg-~l~~~d~~-tG~~~w 623 (900)
...+...||++..+ |.+ |.||.++|++.. +....+...+...++.++.+++++.|.+ .|.++-.+ +|.+.-
T Consensus 47 ~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~ 126 (346)
T COG2706 47 VNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQP 126 (346)
T ss_pred ECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcccc
Confidence 45556688987654 444 556666687643 2333333335667888888999998864 45555443 365432
Q ss_pred EEe---cCCc---------eeeeeeEeCCCCEEEEecC-CCeEEEEECCCCeEEEeecc---CCccccCceeeccCCEEE
Q 002615 624 TFQ---TCGE---------VKCQPVVDAPRQLIWCGSH-DHNLYALDFRNYRCVYKLPC---GGSIFGSPAIDEVHDVLY 687 (900)
Q Consensus 624 ~~~---~~~~---------~~~~~~~~~~~~~i~~gs~-dg~l~~~d~~~g~~~w~~~~---~~~~~~~~~~~~~~~~l~ 687 (900)
..+ ..+. -.-...++++++.|++.+- ...++.|+.+.|+..-.... .|.--...++.+++...|
T Consensus 127 ~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY 206 (346)
T COG2706 127 VVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAY 206 (346)
T ss_pred ceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEE
Confidence 211 1111 0123345666667766532 23588888888765432211 222233456667677777
Q ss_pred EEe-CCCcEEEEEcCCCCce--eeeEeecC------CcceeeeeeeeCCCEEEEEeec-CcEEE--EC-CCCCEEe--ee
Q 002615 688 VAS-TSGRLTAISVKALPFH--TLWLHELE------VPAFASLCITSANRHVICCLVD-GHVVA--LD-SSGSIIW--RC 752 (900)
Q Consensus 688 v~t-~~g~l~~~~~~~~~g~--~~w~~~~~------~~~~~s~~~~~~~~~i~~~~~~-g~v~~--~d-~~G~~~w--~~ 752 (900)
+-+ .++.|.+|..++..|+ .+.....- ....+..++..++..+|++... ..|.+ +| .+|++.. ..
T Consensus 207 ~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~ 286 (346)
T COG2706 207 LVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT 286 (346)
T ss_pred EEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe
Confidence 766 4778888777653343 22222221 1223566777778888887532 23444 45 4454432 12
Q ss_pred cCCCceecccc-cc-ccCCCeEEEEeeCC---eEEEEeCCCCcee
Q 002615 753 RTGGPIFAGPC-TS-FALPSQVLICSRNG---SIYSFEQESGNLL 792 (900)
Q Consensus 753 ~~~~~~~~~~~-~~-~~~~~~l~~g~~dg---~l~~~d~~tG~~~ 792 (900)
.+.+. .|- .. ...++.|++...++ .+|..|.+||++.
T Consensus 287 ~teg~---~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 287 PTEGQ---FPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred ccCCc---CCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence 22221 111 11 22244566655443 5788899999875
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.041 Score=54.85 Aligned_cols=171 Identities=12% Similarity=0.083 Sum_probs=102.2
Q ss_pred EEEEEecCCceeeeeeEeCCCCEEEEecCC---CeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeC-CCcEE
Q 002615 621 IYWTFQTCGEVKCQPVVDAPRQLIWCGSHD---HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST-SGRLT 696 (900)
Q Consensus 621 ~~w~~~~~~~~~~~~~~~~~~~~i~~gs~d---g~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~ 696 (900)
++-+++........-.....++.+|-++.- ..|..+|+++|+...+..++...++--+..- ++.||.-|+ ++..+
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEE
Confidence 344454444444444433234678776532 2599999999999999988877766433222 488999997 67788
Q ss_pred EEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecC--CC-ceeccccccccCCCeE
Q 002615 697 AISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT--GG-PIFAGPCTSFALPSQV 772 (900)
Q Consensus 697 ~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~--~~-~~~~~~~~~~~~~~~l 772 (900)
.||.++ .+.+-++..... .-.++.+++.++....+..++.+| .+-+..-+++. .+ ++-... -....+|.|
T Consensus 114 ~yd~~t--l~~~~~~~y~~E---GWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LN-ELE~i~G~I 187 (264)
T PF05096_consen 114 VYDPNT--LKKIGTFPYPGE---GWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLN-ELEYINGKI 187 (264)
T ss_dssp EEETTT--TEEEEEEE-SSS-----EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EE-EEEEETTEE
T ss_pred EEcccc--ceEEEEEecCCc---ceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcE-eEEEEcCEE
Confidence 999887 777766655542 234556788888887788999999 77666544432 21 111111 012236788
Q ss_pred EEE-eeCCeEEEEeCCCCceeeEEecC
Q 002615 773 LIC-SRNGSIYSFEQESGNLLWEYSVG 798 (900)
Q Consensus 773 ~~g-~~dg~l~~~d~~tG~~~w~~~~~ 798 (900)
|+- .....|..+|++||++.-.+++.
T Consensus 188 yANVW~td~I~~Idp~tG~V~~~iDls 214 (264)
T PF05096_consen 188 YANVWQTDRIVRIDPETGKVVGWIDLS 214 (264)
T ss_dssp EEEETTSSEEEEEETTT-BEEEEEE-H
T ss_pred EEEeCCCCeEEEEeCCCCeEEEEEEhh
Confidence 876 34667999999999998766543
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.096 Score=55.25 Aligned_cols=99 Identities=11% Similarity=0.117 Sum_probs=47.5
Q ss_pred EECCCCcEEEEEecCCc-----eeeceeEecCCCEEEEEee-C--CEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCE
Q 002615 572 ADAKRSSVLWEIKLEGR-----IECSAAVLADFSQVVVGCY-K--GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL 643 (900)
Q Consensus 572 ~d~~tG~~~w~~~~~~~-----~~~~~~~~~~~~~i~vg~~-d--g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 643 (900)
.|+.||..+-++.-... .....++..+|.+++.++. + ..+|.+|+++|++..-....+......++.+++..
T Consensus 15 ~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~ 94 (386)
T PF14583_consen 15 IDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRA 94 (386)
T ss_dssp E-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSE
T ss_pred eCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCe
Confidence 57778776544432221 2235677888876665544 3 47999999999887544433222223344455566
Q ss_pred EEEecCCCeEEEEECCCCeEEEeeccC
Q 002615 644 IWCGSHDHNLYALDFRNYRCVYKLPCG 670 (900)
Q Consensus 644 i~~gs~dg~l~~~d~~~g~~~w~~~~~ 670 (900)
+|.-..+..|+.+|+++++..-.+...
T Consensus 95 ~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 95 LYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp EEEEETTTEEEEEETTT--EEEEEE--
T ss_pred EEEEECCCeEEEEECCcCcEEEEEECC
Confidence 544444568999999998765444443
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0074 Score=58.32 Aligned_cols=140 Identities=11% Similarity=0.092 Sum_probs=79.1
Q ss_pred EEEecCCCeEEEEECCCCeEEEeeccCC------ccccCceeec----cCCEEEEEeCCCcEEEEEcCCCCceeee--Ee
Q 002615 644 IWCGSHDHNLYALDFRNYRCVYKLPCGG------SIFGSPAIDE----VHDVLYVASTSGRLTAISVKALPFHTLW--LH 711 (900)
Q Consensus 644 i~~gs~dg~l~~~d~~~g~~~w~~~~~~------~~~~~~~~~~----~~~~l~v~t~~g~l~~~~~~~~~g~~~w--~~ 711 (900)
+.+|-.+|++..||..++..+-.+.... .....|+.+- .-++=..|+.+..+..|+++..+|...- ..
T Consensus 168 llaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~ 247 (323)
T KOG0322|consen 168 LLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEI 247 (323)
T ss_pred EEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceE
Confidence 4556678999999999985543332211 1112222211 0011122333445666766654454332 33
Q ss_pred ecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCCceeccccccccCC-CeEEEEeeCCeEEEEe
Q 002615 712 ELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALP-SQVLICSRNGSIYSFE 785 (900)
Q Consensus 712 ~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~l~~~d 785 (900)
....+......+-++++.+..+++|+++.+|+ +++..+.-.+.... ...++.+..+ +.+..++.|+.|..|+
T Consensus 248 ~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa--gvn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 248 TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA--GVNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred EecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc--ceeEEEeCCCCchhhhccCCceEEeee
Confidence 44556666777778888889999999999999 88887644332211 1111112222 4566677788777765
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.012 Score=62.50 Aligned_cols=147 Identities=10% Similarity=0.076 Sum_probs=87.2
Q ss_pred CEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeec-cCCccccCce
Q 002615 600 SQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLP-CGGSIFGSPA 678 (900)
Q Consensus 600 ~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~-~~~~~~~~~~ 678 (900)
+.+.+.+.||.+..++ ++|++......+.....+.-+.+++.-+++.+.||.+..|. ++|-..-... .+.++. +..
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~-c~~ 152 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIR-CAR 152 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeE-EEE
Confidence 3577788899999998 78888777666655555566666666788888899999998 4443221111 111221 122
Q ss_pred eeccC-CEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEECCCCCEEeeec
Q 002615 679 IDEVH-DVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCR 753 (900)
Q Consensus 679 ~~~~~-~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d~~G~~~w~~~ 753 (900)
..++. ..+|+. .+.++.=.+.....-+.|+- +.....+......++.+..|+.|-..-+||..|..++.-.
T Consensus 153 W~p~S~~vl~c~--g~h~~IKpL~~n~k~i~WkA--HDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~ 224 (737)
T KOG1524|consen 153 WAPNSNSIVFCQ--GGHISIKPLAANSKIIRWRA--HDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSA 224 (737)
T ss_pred ECCCCCceEEec--CCeEEEeecccccceeEEec--cCcEEEEeecCccccceeecCCceeEEeecccCcccccCC
Confidence 22222 334432 23444433333223455553 3333444445556778888888888888997788876544
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.02 Score=58.23 Aligned_cols=106 Identities=16% Similarity=0.172 Sum_probs=71.8
Q ss_pred CCCeEEEEeeCCeEEEEeCCCCce---eeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecCcc
Q 002615 768 LPSQVLICSRNGSIYSFEQESGNL---LWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVT 844 (900)
Q Consensus 768 ~~~~l~~g~~dg~l~~~d~~tG~~---~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~ 844 (900)
.++.+..++-||.|..||..++.. +.....++.+....+.. ...+++.|+++|.+.+||.+.-..
T Consensus 269 E~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr------------~~~lLasG~DdGt~~iwDLR~~~~ 336 (440)
T KOG0302|consen 269 EDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR------------REPLLASGGDDGTLSIWDLRQFKS 336 (440)
T ss_pred cCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC------------CcceeeecCCCceEEEEEhhhccC
Confidence 345677778899999999998843 22322233332221111 145899999999999999985433
Q ss_pred cccccccccceeeeeeeccCCccccCceee---CCEEEEeeeCCeEEEEEcccc
Q 002615 845 GKENQSKDHMVQEFAKLELQGDIFSSPVMI---GGRVFVGCRDDYIYCIALETQ 895 (900)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~l~~~~~ss~~~~---~~~l~vg~~dg~l~~ld~~tg 895 (900)
+ +.+..++.+...+++.-.. +..+-+++.|+.+-.||+...
T Consensus 337 ~----------~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 337 G----------QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred C----------CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 2 4456666666666665554 577888899999999998643
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.011 Score=59.10 Aligned_cols=227 Identities=12% Similarity=0.120 Sum_probs=127.5
Q ss_pred EEEEecCCCeEEEEECCCCeEEEeeccCCccccCcee-eccCCEEEEEeCCCcEEEEEcCCCCceeeeEe---ecCCcce
Q 002615 643 LIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAI-DEVHDVLYVASTSGRLTAISVKALPFHTLWLH---ELEVPAF 718 (900)
Q Consensus 643 ~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~-~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~---~~~~~~~ 718 (900)
.+.+|+.-|.|+.+|+.++++.-.+..+|.-++..-. ....+.|+.++.|..+..||+++ ...+--+ ..+....
T Consensus 107 ~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~--~~Cv~VfGG~egHrdeV 184 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT--DVCVAVFGGVEGHRDEV 184 (385)
T ss_pred eEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC--CeEEEEecccccccCcE
Confidence 3555667889999999999887766655543333322 22346788999999999999998 6655443 2333444
Q ss_pred eeeeeeeCCCEEEEEeecCcEEEEC-CCCCE------EeeecC------------CCceeccc--------cccccCCCe
Q 002615 719 ASLCITSANRHVICCLVDGHVVALD-SSGSI------IWRCRT------------GGPIFAGP--------CTSFALPSQ 771 (900)
Q Consensus 719 ~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~------~w~~~~------------~~~~~~~~--------~~~~~~~~~ 771 (900)
.+..+..+++++..++.|-.+..|+ ...+. ...+.. .-|.|++. |+... ++.
T Consensus 185 LSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~-gd~ 263 (385)
T KOG1034|consen 185 LSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF-GDF 263 (385)
T ss_pred EEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH-hhh
Confidence 5667777888999999999998887 42211 111111 11122111 11111 234
Q ss_pred EEEEeeCCeEEEEeCCCCcee--eE--------------EecCC-ceecccccccccccccccccCCCeEEEEEcCCCcE
Q 002615 772 VLICSRNGSIYSFEQESGNLL--WE--------------YSVGD-PITASAYIDEHLQLKLESCLSIDRLVCICTSSGSI 834 (900)
Q Consensus 772 l~~g~~dg~l~~~d~~tG~~~--w~--------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v 834 (900)
++.=+-++.|.||-+ |++. |. ++.+. .+...-+. .-+-...+++|...|.+
T Consensus 264 ilSkscenaI~~w~p--gkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~----------~d~~~~~la~gnq~g~v 331 (385)
T KOG1034|consen 264 ILSKSCENAIVCWKP--GKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFA----------FDPWQKMLALGNQSGKV 331 (385)
T ss_pred eeecccCceEEEEec--chhhhhhhccCCCccceeeeeEeccCccceEEEEEe----------ecHHHHHHhhccCCCcE
Confidence 444455678888876 2221 11 11111 00000000 01115678889999999
Q ss_pred EEEEeecCcccccccccccceeeeeeeccCCcccc--CceeeCCEEEEeeeCCeEEEEEcc
Q 002615 835 HILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFS--SPVMIGGRVFVGCRDDYIYCIALE 893 (900)
Q Consensus 835 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s--s~~~~~~~l~vg~~dg~l~~ld~~ 893 (900)
++||.++...... +++. . ...+..+. +...++..|...|.|+.+..||..
T Consensus 332 ~vwdL~~~ep~~~-------ttl~-~-s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 332 YVWDLDNNEPPKC-------TTLT-H-SKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEECCCCCCccC-------ceEE-e-ccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9999986532111 0111 0 11111121 122245677788999999999864
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.021 Score=60.74 Aligned_cols=169 Identities=12% Similarity=0.087 Sum_probs=102.9
Q ss_pred ceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeee
Q 002615 557 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPV 636 (900)
Q Consensus 557 ~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~ 636 (900)
.+.+.+.|.||.+..++. +|++......+.....+.-..++|.-++....||.+..|. ++|-+.-+..-.+....+..
T Consensus 75 ~d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred cceEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEE
Confidence 456777788998888874 4777666665554444556677877788888999999998 78866543322333344445
Q ss_pred EeCCCC-EEEEecCCCeEEE--EECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeec
Q 002615 637 VDAPRQ-LIWCGSHDHNLYA--LDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 713 (900)
Q Consensus 637 ~~~~~~-~i~~gs~dg~l~~--~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 713 (900)
+.++.+ .+|+.. ++++. +.+...-+.|+.+ ..+.-+.-.....+.+..|..|-+...||.. |..+.....
T Consensus 153 W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAH--DGiiL~~~W~~~s~lI~sgGED~kfKvWD~~---G~~Lf~S~~ 225 (737)
T KOG1524|consen 153 WAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAH--DGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ---GANLFTSAA 225 (737)
T ss_pred ECCCCCceEEecC--CeEEEeecccccceeEEecc--CcEEEEeecCccccceeecCCceeEEeeccc---CcccccCCh
Confidence 665544 455543 34443 3444455667653 2222222223334667777888888888865 777776666
Q ss_pred CCcceeeeeeeeCCCEEEEEee
Q 002615 714 EVPAFASLCITSANRHVICCLV 735 (900)
Q Consensus 714 ~~~~~~s~~~~~~~~~i~~~~~ 735 (900)
+...+.+.+..++ ....++++
T Consensus 226 ~ey~ITSva~npd-~~~~v~S~ 246 (737)
T KOG1524|consen 226 EEYAITSVAFNPE-KDYLLWSY 246 (737)
T ss_pred hccceeeeeeccc-cceeeeee
Confidence 5555556666555 33444444
|
|
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0063 Score=65.15 Aligned_cols=156 Identities=17% Similarity=0.236 Sum_probs=90.6
Q ss_pred hcHHHHHHHH----HHcCeeEEEecHHHHHHHHHHHhhccCCCCCC-CcCEEEEec------cCCC-hhhHHHHHhhCC-
Q 002615 48 KNLISIIHFL----QAYSISRLTTVPSLMRVVLPALQSQHNMHVPS-SLKLLVLSG------EVLP-LSMWDIISKLFP- 114 (900)
Q Consensus 48 ~~~~~~~~~l----~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~-~lr~v~~gG------e~l~-~~~~~~~~~~~~- 114 (900)
.+...++..+ .+.++..++++|.++-.++..+++......++ ..+++-.|| |.++ .++.+.+.+.|.
T Consensus 175 ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv 254 (365)
T PF04443_consen 175 LDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGV 254 (365)
T ss_pred cCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHHHHHHHHHHCC
Confidence 4566666655 34567889999998877776666554433333 445555554 5675 566677777772
Q ss_pred --CceEEeecCccccccccceecccCCccccccCCCCcceeeeccCCcEEEEecCCC----CCCCccEEEEccccccccc
Q 002615 115 --NISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDT----VKPDEGEIYAGGLCLSNGY 188 (900)
Q Consensus 115 --~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~----~~~~~GEl~v~g~~~~~gY 188 (900)
..++++.||+||...... .+... -.+.|.. +.+.|+++ +.|+.|-|-+-.+... .
T Consensus 255 ~~~~~i~~~ygmtEl~s~~~--~~~~~--------------~~~~p~w-V~iRDp~tl~~~~~Ge~Gli~vidl~~~-s- 315 (365)
T PF04443_consen 255 IPIENIYDMYGMTELNSQAY--ECGHG--------------HFHVPPW-VIIRDPETLEPLPPGETGLIQVIDLANT-S- 315 (365)
T ss_pred CCHHHeeeeeeccccchhhe--eCCCC--------------cccCCCe-EEEECCCCCcCCCCCCeeEEEEEccccc-C-
Confidence 248999999999764322 22111 0122223 66777765 2334455544332100 0
Q ss_pred cCCCCCCccchhccCCcccccCcCCCCCcceEecCceEEEccC--------CcEEEEcccCCcEEECcee
Q 002615 189 FSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS--------GDLVFLGRKDRTIKINGQR 250 (900)
Q Consensus 189 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~--------G~l~~~GR~dd~ik~~G~r 250 (900)
.-+..-|.|+|.+..+ .++.++||.+.- .++|-.
T Consensus 316 ---------------------------~p~~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~a-e~RGCs 357 (365)
T PF04443_consen 316 ---------------------------YPGFILTEDLGVLHGDDDCGCRKGKYFEVLGRADGA-EIRGCS 357 (365)
T ss_pred ---------------------------CCcEEEEcceeeecCCCCCCCccCCEEEEEeCCCCC-ccCCcH
Confidence 1123679999987654 279999998743 334433
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.11 Score=51.84 Aligned_cols=151 Identities=17% Similarity=0.171 Sum_probs=94.9
Q ss_pred CceEEEEecC---CCeEEEEECCCCcEEEEEecCCceee-ceeEecCCCEEEEEee-CCEEEEEECCCCcEEEEEecCCc
Q 002615 556 SDIYLFVGSH---SHKFICADAKRSSVLWEIKLEGRIEC-SAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTCGE 630 (900)
Q Consensus 556 ~~~~v~igs~---~g~l~~~d~~tG~~~w~~~~~~~~~~-~~~~~~~~~~i~vg~~-dg~l~~~d~~tG~~~w~~~~~~~ 630 (900)
.++.+|-++. ...|..+|+.||+++.+..++.+... ..++.. +.||.-++ ++..+.||..+-+.+-++...++
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~E 131 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGE 131 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTEEEEEEE-SSS
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccceEEEEEecCCc
Confidence 3567777763 23799999999999999998876532 233333 47888886 67889999999988887776654
Q ss_pred eeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeecc--CC-ccccCceeeccCCEEEEEeC-CCcEEEEEcCCCCce
Q 002615 631 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC--GG-SIFGSPAIDEVHDVLYVAST-SGRLTAISVKALPFH 706 (900)
Q Consensus 631 ~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~--~~-~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~ 706 (900)
-... .. ++..+|.......|+.+|+++-+...+... .+ ++..---+.-.++.||+.-+ ...|.++|+.+ |+
T Consensus 132 GWGL--t~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~t--G~ 206 (264)
T PF05096_consen 132 GWGL--TS-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPET--GK 206 (264)
T ss_dssp --EE--EE-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT---B
T ss_pred ceEE--Ec-CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCC--Ce
Confidence 4332 12 356788877778999999998877665544 22 11111111112478887765 45688899988 98
Q ss_pred eeeEeec
Q 002615 707 TLWLHEL 713 (900)
Q Consensus 707 ~~w~~~~ 713 (900)
+.-.++.
T Consensus 207 V~~~iDl 213 (264)
T PF05096_consen 207 VVGWIDL 213 (264)
T ss_dssp EEEEEE-
T ss_pred EEEEEEh
Confidence 8766654
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.2 Score=49.75 Aligned_cols=181 Identities=11% Similarity=0.111 Sum_probs=108.5
Q ss_pred CCEEEEecCCCeEEEEECCCCe-EEE--eeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeee-EeecCCc
Q 002615 641 RQLIWCGSHDHNLYALDFRNYR-CVY--KLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLW-LHELEVP 716 (900)
Q Consensus 641 ~~~i~~gs~dg~l~~~d~~~g~-~~w--~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w-~~~~~~~ 716 (900)
.+++|++.++.+|..+|..+-. +.. .+...+ ......+ .++..|++..+..+..+|..+.+.-++- ++....
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~g-yaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~- 171 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDG-YAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPG- 171 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccCCc-eEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCC-
Confidence 4788999888899999986532 221 122211 1112223 2588999997777888998763322222 121111
Q ss_pred ceeeeeeeeCCCEEEEEeecCcEEEEC-CC---CCEEeeecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCcee
Q 002615 717 AFASLCITSANRHVICCLVDGHVVALD-SS---GSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLL 792 (900)
Q Consensus 717 ~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~---G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~ 792 (900)
..+-....++++.|++..++++...| ++ -.++-++..+....+. ...++..|+.-.+-.+...|..+-+-.
T Consensus 172 -~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv----~vsdnr~y~vvy~egvlivd~s~~ssp 246 (370)
T COG5276 172 -GDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSV----SVSDNRAYLVVYDEGVLIVDVSGPSSP 246 (370)
T ss_pred -CCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEE----EecCCeeEEEEcccceEEEecCCCCCc
Confidence 11223445688999999999999999 43 2344455555433332 234678888888878999997766655
Q ss_pred eEEe---cCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecC
Q 002615 793 WEYS---VGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 842 (900)
Q Consensus 793 w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~ 842 (900)
|.+. ...+...+ .....+...|+...+..+-+.|.++.
T Consensus 247 ~~~gsyet~~p~~~s------------~v~Vs~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 247 TVFGSYETSNPVSIS------------TVPVSGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred eEeeccccCCccccc------------ceecccceeeeeccccCceeEeccCC
Confidence 6443 22221111 11233788888888877888877654
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.48 Score=51.82 Aligned_cols=225 Identities=13% Similarity=0.175 Sum_probs=136.7
Q ss_pred eEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeC-CEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEE
Q 002615 568 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK-GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWC 646 (900)
Q Consensus 568 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~d-g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~ 646 (900)
.+..++.......-....+........+...+..+|+.+.+ +.+..+|..+-+..-....+. ......++++++.+|+
T Consensus 54 ~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV 132 (381)
T COG3391 54 DVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYV 132 (381)
T ss_pred eeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEE
Confidence 46666655333222222222222355677777889988754 789999977766665554443 3334456667788999
Q ss_pred ecC---CCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEe-CCCcEEEEEcCCCCceeeeEeecC---Ccce-
Q 002615 647 GSH---DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHELE---VPAF- 718 (900)
Q Consensus 647 gs~---dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~~---~~~~- 718 (900)
+.. ++.+..+|..+++.+-....+... ...++++++..+|+.. .++.+..+|.++ ..+|+ ... ....
T Consensus 133 ~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~---~~v~~-~~~~~~~~~~~ 207 (381)
T COG3391 133 ANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG---NSVVR-GSVGSLVGVGT 207 (381)
T ss_pred EecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCC---cceec-cccccccccCC
Confidence 765 688999999999887775554423 4456666678798887 577899999664 55554 211 1111
Q ss_pred --eeeeeeeCCCEEEEEeec---CcEEEEC-CCCCEEee-ecCCCceeccccccccCCCeEEEEee-CCeEEEEeCCCCc
Q 002615 719 --ASLCITSANRHVICCLVD---GHVVALD-SSGSIIWR-CRTGGPIFAGPCTSFALPSQVLICSR-NGSIYSFEQESGN 790 (900)
Q Consensus 719 --~s~~~~~~~~~i~~~~~~---g~v~~~d-~~G~~~w~-~~~~~~~~~~~~~~~~~~~~l~~g~~-dg~l~~~d~~tG~ 790 (900)
....+..++..+|+.... +.+..+| .++...+. ...+.. ........-.+..+|+... .+.++.+|..+.+
T Consensus 208 ~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 208 GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred CCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 233455667778887654 4888999 77777654 333321 0000111223456676633 4789999988877
Q ss_pred eeeEEecCC
Q 002615 791 LLWEYSVGD 799 (900)
Q Consensus 791 ~~w~~~~~~ 799 (900)
+.-....+.
T Consensus 287 v~~~~~~~~ 295 (381)
T COG3391 287 VVKTGPTGN 295 (381)
T ss_pred eeeeecccc
Confidence 765544433
|
|
| >CHL00124 acpP acyl carrier protein; Validated | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0013 Score=53.88 Aligned_cols=67 Identities=16% Similarity=0.212 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHhcccCC--cccccCCCccc-cCcchHHHHHHHHHh------CCCchhhhcCCCHHHHHHHHHhhc
Q 002615 359 SDLLQVIRKAFGHALMV--EEVLHHDNFFT-MGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 425 (900)
Q Consensus 359 ~~~~~~~~~~~~~~l~~--~~i~~~~~Ff~-lGgdSl~a~~l~~~l------~~~~~~~~~~~t~~~l~~~l~~~~ 425 (900)
.++.+.+++++++.+++ ..+..+++|.+ +|.|||.++.|...+ .++...+...+|+..++.++..+.
T Consensus 4 ~~i~~~l~~ii~~~~~~~~~~i~~d~~l~~dlg~DSl~~~eli~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~ 79 (82)
T CHL00124 4 NDIFEKVQSIVAEQLGIEKSEVTLDANFTRDLGADSLDVVELVMAIEEKFDIEIPDEDAEKISTLQEAVDFISQKI 79 (82)
T ss_pred HHHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCccCHHHHHHcCCHHHHHHHHHHHh
Confidence 46777888888888877 46999999988 999999999987755 467777999999999999998754
|
|
| >smart00823 PKS_PP Phosphopantetheine attachment site | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0013 Score=54.31 Aligned_cols=65 Identities=23% Similarity=0.384 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcccCCcc---cccCCCccccCcchHHHHHHHHHh------CCCchhhhcCCCHHHHHHHHHhh
Q 002615 360 DLLQVIRKAFGHALMVEE---VLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 424 (900)
Q Consensus 360 ~~~~~~~~~~~~~l~~~~---i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~~t~~~l~~~l~~~ 424 (900)
.+...+...|...++... +..+.+||++|+||+.++++...+ .++...++.+||+..|+.++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~dSl~~~~~~~~l~~~~~~~i~~~~~~~~~t~~~l~~~i~~~ 85 (86)
T smart00823 12 LLLDLVREQVAAVLGHAAAEAIDPDRPFRDLGLDSLTAVELRNRLEAATGLRLPATLVFDHPTPAALAEHLAAE 85 (86)
T ss_pred HHHHHHHHHHHHHHCCCccccCCCCCCHHHcCchHHHHHHHHHHHHHHHCCCCChHHHHcCCCHHHHHHHHHHh
Confidence 456677788887776632 478889999999999999887643 47788899999999999888653
|
Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups PUBMED:5321311. |
| >PRK00982 acpP acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0013 Score=53.16 Aligned_cols=65 Identities=17% Similarity=0.199 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcccCCc--ccccCCCc-cccCcchHHHHHHHHHh------CCCchhhhcCCCHHHHHHHHHhh
Q 002615 360 DLLQVIRKAFGHALMVE--EVLHHDNF-FTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 424 (900)
Q Consensus 360 ~~~~~~~~~~~~~l~~~--~i~~~~~F-f~lGgdSl~a~~l~~~l------~~~~~~~~~~~t~~~l~~~l~~~ 424 (900)
++.+.++++++++++.+ .+..+.+| -++|-|||.+++|...+ .++...+.+.+|+..|+.++..+
T Consensus 3 ~i~~~l~~~l~~~l~~~~~~i~~d~~l~~dlglDSl~~~~li~~le~~f~i~i~~~~~~~~~ti~~l~~~l~~~ 76 (78)
T PRK00982 3 EIFEKVKKIIVEQLGVDEEEVTPEASFVDDLGADSLDTVELVMALEEEFGIEIPDEDAEKIKTVGDAVDYIEKH 76 (78)
T ss_pred HHHHHHHHHHHHHHCCCHHHCCCCcchHhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHcCcHHHHHHHHHHh
Confidence 46677888888888774 58888999 79999999999998765 47778899999999999999764
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.026 Score=58.91 Aligned_cols=200 Identities=7% Similarity=0.014 Sum_probs=100.9
Q ss_pred CCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeee--------EeecCCc-ceeeeee-eeCCCEEEEEeecCcE
Q 002615 670 GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLW--------LHELEVP-AFASLCI-TSANRHVICCLVDGHV 739 (900)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w--------~~~~~~~-~~~s~~~-~~~~~~i~~~~~~g~v 739 (900)
.|.+...-....+...|...+..+.++.||....+....- +...+.. .+ +... ....+.+..++.++.+
T Consensus 124 ~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~-glsWn~~~~g~Lls~~~d~~i 202 (422)
T KOG0264|consen 124 DGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGY-GLSWNRQQEGTLLSGSDDHTI 202 (422)
T ss_pred CccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccc-ccccccccceeEeeccCCCcE
Confidence 3444333333333355566678889999986653332221 1111111 11 1111 1235788888899999
Q ss_pred EEEC-C-CCCE---E---eeecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCC--ceeeEEecC-Cceecccccc
Q 002615 740 VALD-S-SGSI---I---WRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESG--NLLWEYSVG-DPITASAYID 808 (900)
Q Consensus 740 ~~~d-~-~G~~---~---w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG--~~~w~~~~~-~~~~~~~~~~ 808 (900)
.++| . .+.. + -.+.....+..-........+.+-..+.|+.|..||..++ +..-..+.+ .++.+..+-
T Consensus 203 ~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn- 281 (422)
T KOG0264|consen 203 CLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN- 281 (422)
T ss_pred EEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC-
Confidence 9998 3 2221 1 0111111111000011112233444577899999998853 222222222 222222221
Q ss_pred cccccccccccCCCeEEEEEcCCCcEEEEEeecCcccccccccccceeeeeeeccCCccccCcee---eCCEEEEeeeCC
Q 002615 809 EHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM---IGGRVFVGCRDD 885 (900)
Q Consensus 809 ~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~---~~~~l~vg~~dg 885 (900)
..++..++.|+.|++|.+||.++= .+.+-.++.+...+...-. .+..|-.++.|+
T Consensus 282 ----------p~~~~ilAT~S~D~tV~LwDlRnL------------~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~ 339 (422)
T KOG0264|consen 282 ----------PFNEFILATGSADKTVALWDLRNL------------NKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDR 339 (422)
T ss_pred ----------CCCCceEEeccCCCcEEEeechhc------------ccCceeccCCCcceEEEEeCCCCCceeEecccCC
Confidence 122778889999999999999853 1222233333332222111 234566677899
Q ss_pred eEEEEEcc
Q 002615 886 YIYCIALE 893 (900)
Q Consensus 886 ~l~~ld~~ 893 (900)
.+..||+.
T Consensus 340 rl~vWDls 347 (422)
T KOG0264|consen 340 RLNVWDLS 347 (422)
T ss_pred cEEEEecc
Confidence 99999985
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0007 Score=74.09 Aligned_cols=165 Identities=13% Similarity=-0.003 Sum_probs=107.0
Q ss_pred EecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCe
Q 002615 583 IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR 662 (900)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~ 662 (900)
+..+....-+..+......|..|+.+|.|.+||++.+++..+...+-....+..+.+...+...|+.|+.+..||.+...
T Consensus 66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G 145 (825)
T KOG0267|consen 66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG 145 (825)
T ss_pred eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC
Confidence 44444444467777777788899999999999999998776544333223333455544444458889999999998777
Q ss_pred EEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEE
Q 002615 663 CVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVAL 742 (900)
Q Consensus 663 ~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~ 742 (900)
|...+..+..+.....+.+.+..+..++.+..+..||... |+..-.++.+.....++.+.+.+-.+-.|+.|+.+-.+
T Consensus 146 c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a--gk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~ 223 (825)
T KOG0267|consen 146 CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA--GKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFW 223 (825)
T ss_pred ceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccc--cccccccccccccccccccCchhhhhccCCCCceeeee
Confidence 8777765444445555666555777788889999999877 88776666443322333332222234445666777777
Q ss_pred C-CCCCEE
Q 002615 743 D-SSGSII 749 (900)
Q Consensus 743 d-~~G~~~ 749 (900)
| .+-+.+
T Consensus 224 dletfe~I 231 (825)
T KOG0267|consen 224 DLETFEVI 231 (825)
T ss_pred ccceeEEe
Confidence 6 544443
|
|
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.086 Score=55.02 Aligned_cols=146 Identities=12% Similarity=0.213 Sum_probs=77.6
Q ss_pred eCCEEEEEECCCCcEEEEEecCCcee---------------------------eeeeEeCCCCEEEEecCCCeEEEEECC
Q 002615 607 YKGKIYFLDYLTGDIYWTFQTCGEVK---------------------------CQPVVDAPRQLIWCGSHDHNLYALDFR 659 (900)
Q Consensus 607 ~dg~l~~~d~~tG~~~w~~~~~~~~~---------------------------~~~~~~~~~~~i~~gs~dg~l~~~d~~ 659 (900)
.|+.++.+|++||+++|.....+.+. -+.-...++.+|+..-+-..|+++|.+
T Consensus 94 ~d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~ 173 (299)
T PF14269_consen 94 LDDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPS 173 (299)
T ss_pred ecceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEecccCEEEEEECC
Confidence 36679999999999998754321110 001112233445444455789999999
Q ss_pred CCeEEEeeccC-Ccc-------cc---Cceee---ccCCEEEE-Ee----------CCCcEEEEEcCCCCceeeeEee-c
Q 002615 660 NYRCVYKLPCG-GSI-------FG---SPAID---EVHDVLYV-AS----------TSGRLTAISVKALPFHTLWLHE-L 713 (900)
Q Consensus 660 ~g~~~w~~~~~-~~~-------~~---~~~~~---~~~~~l~v-~t----------~~g~l~~~~~~~~~g~~~w~~~-~ 713 (900)
+|+++|+.... +.- ++ .+-+. +..+.|-+ -. ..+.++.+|..+.+-+.++.+. .
T Consensus 174 tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~ 253 (299)
T PF14269_consen 174 TGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDH 253 (299)
T ss_pred CCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecC
Confidence 99999997433 110 10 01111 01122222 11 2456777777763333334333 1
Q ss_pred CCcce----eeeeeeeCCCEEEEE-eecCcEEEECCCCCEEeeec
Q 002615 714 EVPAF----ASLCITSANRHVICC-LVDGHVVALDSSGSIIWRCR 753 (900)
Q Consensus 714 ~~~~~----~s~~~~~~~~~i~~~-~~~g~v~~~d~~G~~~w~~~ 753 (900)
..+.+ .+....+ +|.++++ +..+.+.=++.+|+++|++.
T Consensus 254 ~~~~~s~~~G~~Q~L~-nGn~li~~g~~g~~~E~~~~G~vv~~~~ 297 (299)
T PF14269_consen 254 PDGFYSPSQGSAQRLP-NGNVLIGWGNNGRISEFTPDGEVVWEAQ 297 (299)
T ss_pred CCcccccCCCcceECC-CCCEEEecCCCceEEEECCCCCEEEEEE
Confidence 22221 2223333 4555555 44567777778899999874
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.2 Score=55.80 Aligned_cols=181 Identities=13% Similarity=0.101 Sum_probs=92.1
Q ss_pred CEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCE---EEEecCC--CeEEEEECCCCeEEEeeccCCccccCceeeccC
Q 002615 609 GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL---IWCGSHD--HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVH 683 (900)
Q Consensus 609 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~---i~~gs~d--g~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~ 683 (900)
..|+..|...+.. ..+..+......|.+.+++.. +|+...+ ..||..+..+|+........+. ...|..++++
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~-~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGN-QLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCC-ccceEECCCC
Confidence 3688888554433 233334444567888887653 3444333 3699999988876544444443 3357777766
Q ss_pred CEEEEEeC-CC--cEEE--EEcCCCC-ceeeeEeecCCcceeeeeeeeCCCEEEEEe-ecC--cEEEEC-C-CCCEEeee
Q 002615 684 DVLYVAST-SG--RLTA--ISVKALP-FHTLWLHELEVPAFASLCITSANRHVICCL-VDG--HVVALD-S-SGSIIWRC 752 (900)
Q Consensus 684 ~~l~v~t~-~g--~l~~--~~~~~~~-g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~-~~g--~v~~~d-~-~G~~~w~~ 752 (900)
..|++.+. .| .++. ++..... |+..............+.+.+++..++..+ .+| .++.++ . .|...-.+
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 67766542 22 3444 4544311 222222211112224566777777666554 334 466665 2 22222222
Q ss_pred cCCCceeccccccccCCCeEEEEeeC---CeEEEEeCCCCcee
Q 002615 753 RTGGPIFAGPCTSFALPSQVLICSRN---GSIYSFEQESGNLL 792 (900)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~l~~g~~d---g~l~~~d~~tG~~~ 792 (900)
.........+..+. .+..|++.+.+ ..|+.+|.++|+..
T Consensus 323 t~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~g~~~ 364 (428)
T PRK01029 323 TKKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLATGRDY 364 (428)
T ss_pred ccCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCCCCeE
Confidence 21111112222222 23445554432 36899999988764
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0041 Score=66.45 Aligned_cols=209 Identities=14% Similarity=0.107 Sum_probs=114.5
Q ss_pred cCCccccccccccccccccccccceE--EeeCCceEEEEecCCCeEEEEE------CCCCc---EEEE-EecCCceeece
Q 002615 526 PRNKRGFIQELWKVHMESCVDASPLV--VLKDSDIYLFVGSHSHKFICAD------AKRSS---VLWE-IKLEGRIECSA 593 (900)
Q Consensus 526 ~~~~~~~~~~~W~~~~~~~v~~sp~v--~~~~~~~~v~igs~~g~l~~~d------~~tG~---~~w~-~~~~~~~~~~~ 593 (900)
+.+....+..+|++.-.+ .|++ +.......+|.|++||.|.+|+ +.+.- .+-. +..+..-....
T Consensus 327 ~~s~~~~~epi~tfraH~----gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l 402 (577)
T KOG0642|consen 327 KKSAEKDVEPILTFRAHE----GPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLL 402 (577)
T ss_pred CCccccceeeeEEEeccc----CceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeee
Confidence 344455677778876532 2322 2334577999999999999993 33221 1111 11111111234
Q ss_pred eEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEe--CCCCEEEEecCCCeEEEEECCCCeEEEeecc--
Q 002615 594 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVD--APRQLIWCGSHDHNLYALDFRNYRCVYKLPC-- 669 (900)
Q Consensus 594 ~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~-- 669 (900)
.++....++...+.||+++.|+...... -.|...........++ ..+-.+.+.+. .+..+++.+.++...+..
T Consensus 403 ~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~--~~~~~~~~~~ev~s~~~~~~ 479 (577)
T KOG0642|consen 403 ALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASF--RFGYTSIDDMEVVSDLLIFE 479 (577)
T ss_pred eecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhc--ccccccchhhhhhhheeecc
Confidence 4555556788888999999999766555 2333222111111111 11111112222 122222222222221111
Q ss_pred ----CC----ccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEE
Q 002615 670 ----GG----SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVA 741 (900)
Q Consensus 670 ----~~----~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~ 741 (900)
++ +-....+..+..+..|.+-.++.+..+|..+ |+++.....+...+.+.++.+.+.++..++.++.+..
T Consensus 480 s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~--~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l 557 (577)
T KOG0642|consen 480 SSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT--GKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRL 557 (577)
T ss_pred ccCCCcccccCccceEEecCCCCeeEecccCCceecccccc--cccchheeeccceecceeecCCCceEEeecCCceeeh
Confidence 11 0111122333446677777888899998777 8888887777777778888888888888888887776
Q ss_pred EC
Q 002615 742 LD 743 (900)
Q Consensus 742 ~d 743 (900)
+.
T Consensus 558 ~k 559 (577)
T KOG0642|consen 558 WK 559 (577)
T ss_pred hh
Confidence 65
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.016 Score=59.20 Aligned_cols=183 Identities=14% Similarity=0.174 Sum_probs=109.7
Q ss_pred CCEEEEecCCCeEEEEECCCCeEEEee-------ccC----CccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeee
Q 002615 641 RQLIWCGSHDHNLYALDFRNYRCVYKL-------PCG----GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLW 709 (900)
Q Consensus 641 ~~~i~~gs~dg~l~~~d~~~g~~~w~~-------~~~----~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w 709 (900)
+..|..||.|..+..|.+-.+...... ..+ |.+...|.. .+.|+.++.+..+..||..+ |+.+-
T Consensus 94 D~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA---~NVLlsag~Dn~v~iWnv~t--geali 168 (472)
T KOG0303|consen 94 DCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTA---PNVLLSAGSDNTVSIWNVGT--GEALI 168 (472)
T ss_pred CceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccc---hhhHhhccCCceEEEEeccC--Cceee
Confidence 456677788888888875443222111 111 112222222 25566777889999999998 88887
Q ss_pred EeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCCceeccccccccCCCeEEEEe----eCCeEEEE
Q 002615 710 LHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICS----RNGSIYSF 784 (900)
Q Consensus 710 ~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~----~dg~l~~~ 784 (900)
+.+ +.....+..+..++..+...+.|..|.++| .+|++++........-..-++ +..++.++... .+..+-.|
T Consensus 169 ~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Rai-fl~~g~i~tTGfsr~seRq~aLw 246 (472)
T KOG0303|consen 169 TLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAI-FLASGKIFTTGFSRMSERQIALW 246 (472)
T ss_pred ecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeE-EeccCceeeeccccccccceecc
Confidence 776 555556777877888888889999999999 999999876322111111111 22233344332 24456667
Q ss_pred eCCCCce---eeEEecCCceecccccccccccccccccCCCeEEEEEc-CCCcEEEEEeecC
Q 002615 785 EQESGNL---LWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICT-SSGSIHILRVNLD 842 (900)
Q Consensus 785 d~~tG~~---~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~~G~v~~~d~~~~ 842 (900)
|+++-+. .-+++..+ .+..||.+.+ .+.+|.++ -||.|+.|+..+.
T Consensus 247 dp~nl~eP~~~~elDtSn-Gvl~PFyD~d-----------t~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 247 DPNNLEEPIALQELDTSN-GVLLPFYDPD-----------TSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred CcccccCcceeEEeccCC-ceEEeeecCC-----------CCEEEEEecCCcceEEEEecCC
Confidence 6654221 22333333 3445666653 45666554 5889999988765
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.031 Score=61.84 Aligned_cols=105 Identities=10% Similarity=0.063 Sum_probs=72.0
Q ss_pred CceEEEEecCCCeEEEEECCCCcEEEEEe-cCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcE---EEEEe---cC
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWEIK-LEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDI---YWTFQ---TC 628 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~---~w~~~---~~ 628 (900)
...++.+|+..|.||.|+..+|+.+-... ....+.+..+++.+..++.+|+..|.|..+-...+.. ..... .+
T Consensus 44 t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~ 123 (726)
T KOG3621|consen 44 TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSH 123 (726)
T ss_pred CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccC
Confidence 36789999999999999999887653322 1344555667777777788888888776665444322 11111 12
Q ss_pred CceeeeeeEeCCCCEEEEecCCCeEEEEECCC
Q 002615 629 GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRN 660 (900)
Q Consensus 629 ~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~ 660 (900)
+..+++..++.+...+|.|...|.|.+..+.+
T Consensus 124 ~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 124 KCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CceEEEEEecccccEEeecCCCceEEEEEech
Confidence 33456667787888899999999888776655
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.031 Score=63.17 Aligned_cols=204 Identities=16% Similarity=0.230 Sum_probs=104.4
Q ss_pred eeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCc-eeeeeeEeCCCCEEEEecCC-C----eEEEEECCCC-----
Q 002615 593 AAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE-VKCQPVVDAPRQLIWCGSHD-H----NLYALDFRNY----- 661 (900)
Q Consensus 593 ~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~~~~~~i~~gs~d-g----~l~~~d~~~g----- 661 (900)
.++++.++.|++|+.+|.|..+| ..-+....++.... +....-.......+++-..| + .|..||++.-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred eEEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 46677788999999999999998 33333333333222 22222223222344443322 2 4666665421
Q ss_pred -eEE---Eeecc--C--CccccCceeeccCCEEEEEeCCCcEEEEEcC--CCCce-eeeEeecCCcceeeeeeeeCCCE-
Q 002615 662 -RCV---YKLPC--G--GSIFGSPAIDEVHDVLYVASTSGRLTAISVK--ALPFH-TLWLHELEVPAFASLCITSANRH- 729 (900)
Q Consensus 662 -~~~---w~~~~--~--~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~--~~~g~-~~w~~~~~~~~~~s~~~~~~~~~- 729 (900)
.++ ..+.. + ..+.++.++..+-..+.+|-.+|.|+++.-+ .+.|. .........+ .....+..++..
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~p-ITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEP-ITGLALRSDGKSV 186 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCC-ceeeEEecCCcee
Confidence 233 11221 1 2344555666656778999999999988522 11122 1111222222 233444444444
Q ss_pred EEEEeecCcEEEECCCCCE-Eee-ecCCCceeccccccccCC-CeEEEEeeCCeEEEEeCCCCceeeEEecCCcee
Q 002615 730 VICCLVDGHVVALDSSGSI-IWR-CRTGGPIFAGPCTSFALP-SQVLICSRNGSIYSFEQESGNLLWEYSVGDPIT 802 (900)
Q Consensus 730 i~~~~~~g~v~~~d~~G~~-~w~-~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~ 802 (900)
+|+++. ..|..|.-+|+. .-. .+..+ .+..|...... +.+.++ .+..|+.|+...-+..|.+..+..-.
T Consensus 187 lFv~Tt-~~V~~y~l~gr~p~~~~ld~~G--~~lnCss~~~~t~qfIca-~~e~l~fY~sd~~~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 187 LFVATT-EQVMLYSLSGRTPSLKVLDNNG--ISLNCSSFSDGTYQFICA-GSEFLYFYDSDGRGPCFAFEVGEKKE 258 (933)
T ss_pred EEEEec-ceeEEEEecCCCcceeeeccCC--ccceeeecCCCCccEEEe-cCceEEEEcCCCcceeeeecCCCeEE
Confidence 566665 456666622332 222 22222 12223223222 234444 45569999988777889888766543
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.15 Score=59.15 Aligned_cols=291 Identities=11% Similarity=0.053 Sum_probs=136.0
Q ss_pred eCCceEEEEecCCCeEEEEECCCCcEEEEEecCCce---eeceeEec--CCCEEEEEeeCCEEEEEECCCCcEEEEEecC
Q 002615 554 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRI---ECSAAVLA--DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC 628 (900)
Q Consensus 554 ~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~---~~~~~~~~--~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~ 628 (900)
+.-...++++...-.|..||-..|+.+-.+..+... .+..++.+ |...+.+++.||.|..|+. -...|. ..
T Consensus 1073 hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~--y~~~~~--~~ 1148 (1387)
T KOG1517|consen 1073 HPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD--YADKWK--KP 1148 (1387)
T ss_pred cCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc--cccccC--Cc
Confidence 334455666654556888888888877666654321 12233332 3346778888888887752 111220 00
Q ss_pred CceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceee
Q 002615 629 GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTL 708 (900)
Q Consensus 629 ~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~ 708 (900)
.-+. .+..-.+.+......|-+..|... .|.|+++..-..|..||... -...
T Consensus 1149 eLVT---aw~~Ls~~~~~~r~~~~v~dWqQ~-----------------------~G~Ll~tGd~r~IRIWDa~~--E~~~ 1200 (1387)
T KOG1517|consen 1149 ELVT---AWSSLSDQLPGARGTGLVVDWQQQ-----------------------SGHLLVTGDVRSIRIWDAHK--EQVV 1200 (1387)
T ss_pred eeEE---eeccccccCccCCCCCeeeehhhh-----------------------CCeEEecCCeeEEEEEeccc--ceeE
Confidence 0000 000000111111111222222211 25566655555677777664 2222
Q ss_pred eEeecCCcce-eeeee-eeCCCEEEEEeecCcEEEEC-CCC-----CEEeeecCC-CceeccccccccCCCeEEEEeeCC
Q 002615 709 WLHELEVPAF-ASLCI-TSANRHVICCLVDGHVVALD-SSG-----SIIWRCRTG-GPIFAGPCTSFALPSQVLICSRNG 779 (900)
Q Consensus 709 w~~~~~~~~~-~s~~~-~~~~~~i~~~~~~g~v~~~d-~~G-----~~~w~~~~~-~~~~~~~~~~~~~~~~l~~g~~dg 779 (900)
-....+.... .+... ...++.+.+|..||.+..|| ..- -..|+--.. .++.... +.....+.|+.|+.+|
T Consensus 1201 ~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~s-lq~~G~~elvSgs~~G 1279 (1387)
T KOG1517|consen 1201 ADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLS-LQRQGLGELVSGSQDG 1279 (1387)
T ss_pred eecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEE-eecCCCcceeeeccCC
Confidence 2222221111 11111 12256788888899999999 322 123443221 1222211 1111234799999999
Q ss_pred eEEEEeCCCCceee--EEec----CCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecCccccccccccc
Q 002615 780 SIYSFEQESGNLLW--EYSV----GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDH 853 (900)
Q Consensus 780 ~l~~~d~~tG~~~w--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~ 853 (900)
.|+.||.......- +... ++..+ ...+.+ ....++.|+. +.|.+|+..............
T Consensus 1280 ~I~~~DlR~~~~e~~~~iv~~~~yGs~lT-al~VH~-----------hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~- 1345 (1387)
T KOG1517|consen 1280 DIQLLDLRMSSKETFLTIVAHWEYGSALT-ALTVHE-----------HAPIIASGSA-QLIKIYSLSGEQLNIIKYNPG- 1345 (1387)
T ss_pred eEEEEecccCcccccceeeeccccCccce-eeeecc-----------CCCeeeecCc-ceEEEEecChhhhcccccCcc-
Confidence 99999987632111 1111 11111 112222 2556666665 889999987543322210000
Q ss_pred ceeeeeeeccCCccccCceeeC--CEEEEeeeCCeEEEEEcccccc
Q 002615 854 MVQEFAKLELQGDIFSSPVMIG--GRVFVGCRDDYIYCIALETQHL 897 (900)
Q Consensus 854 ~~~~~~~~~l~~~~~ss~~~~~--~~l~vg~~dg~l~~ld~~tg~~ 897 (900)
+ ....-...++..++. =.+.+|..|..+-+|....+++
T Consensus 1346 ----F--~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1346 ----F--MGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred ----c--ccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcCC
Confidence 0 000001123333333 2456677788887877665543
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.11 Score=48.88 Aligned_cols=136 Identities=15% Similarity=0.100 Sum_probs=97.5
Q ss_pred CCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEec----CC---ceeeeeeE
Q 002615 565 HSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT----CG---EVKCQPVV 637 (900)
Q Consensus 565 ~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~----~~---~~~~~~~~ 637 (900)
.|..||.-|-.+|+....+..+..-. -..++=++-.+..|+.|.+|.+||+.-...+..... ++ ..+....+
T Consensus 161 gdc~iy~tdc~~g~~~~a~sghtghi-lalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v 239 (350)
T KOG0641|consen 161 GDCKIYITDCGRGQGFHALSGHTGHI-LALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV 239 (350)
T ss_pred CcceEEEeecCCCCcceeecCCcccE-EEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence 46678888888888776666554322 234444555777899999999999876655544322 11 34455667
Q ss_pred eCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcC
Q 002615 638 DAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVK 701 (900)
Q Consensus 638 ~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~ 701 (900)
++.+..+..|-.|..-..||+..|..+.++..+..-+.+.-+++....++.++.+..+..-|++
T Consensus 240 dpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 240 DPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred CCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 8877888888888888999999999999988776655556666655678888888888877766
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0062 Score=70.68 Aligned_cols=227 Identities=15% Similarity=0.131 Sum_probs=122.1
Q ss_pred CEEEEEeeCCEEEEEECCC---CcE---EEEEec-CCceeeeeeEeCC-CCEEEEecCCCeEEEEECCCCeEEEeeccCC
Q 002615 600 SQVVVGCYKGKIYFLDYLT---GDI---YWTFQT-CGEVKCQPVVDAP-RQLIWCGSHDHNLYALDFRNYRCVYKLPCGG 671 (900)
Q Consensus 600 ~~i~vg~~dg~l~~~d~~t---G~~---~w~~~~-~~~~~~~~~~~~~-~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~ 671 (900)
+.|.-|+.||.|..||+.. +.. +-++.. .+.+.. .-+... ++.+..|+.+|.|+.||+++-+.- +..++
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~g-LDfN~~q~nlLASGa~~geI~iWDlnn~~tP--~~~~~ 157 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLG-LDFNPFQGNLLASGADDGEILIWDLNKPETP--FTPGS 157 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceee-eeccccCCceeeccCCCCcEEEeccCCcCCC--CCCCC
Confidence 4677788999999999755 211 222222 344444 333333 346777889999999998763221 11111
Q ss_pred c-cccC-ceeec---cCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcc--eeeeeeeeCC-CEEEEEeecCc---EE
Q 002615 672 S-IFGS-PAIDE---VHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPA--FASLCITSAN-RHVICCLVDGH---VV 740 (900)
Q Consensus 672 ~-~~~~-~~~~~---~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~--~~s~~~~~~~-~~i~~~~~~g~---v~ 740 (900)
. .... -++.- ....+..++.+|+...||++. .+++-........ .+.....+++ ..+++++.|.+ |.
T Consensus 158 ~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~--~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pviq 235 (1049)
T KOG0307|consen 158 QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK--KKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQ 235 (1049)
T ss_pred CCCcccceEeccchhhhHHhhccCCCCCceeccccC--CCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeE
Confidence 1 0000 01111 113345567788999999886 3444444333221 2233333332 35666665543 33
Q ss_pred EEC-C-CCCEEeeec-CCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEEecCCceeccccccccccccccc
Q 002615 741 ALD-S-SGSIIWRCR-TGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLES 817 (900)
Q Consensus 741 ~~d-~-~G~~~w~~~-~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 817 (900)
.+| + .-..+-.++ ....+.+.... ..++..++.+..|+.++|||.+||+++-++...++.+....+
T Consensus 236 lWDlR~assP~k~~~~H~~GilslsWc-~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w---------- 304 (1049)
T KOG0307|consen 236 LWDLRFASSPLKILEGHQRGILSLSWC-PQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQW---------- 304 (1049)
T ss_pred eecccccCCchhhhcccccceeeeccC-CCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeee----------
Confidence 444 1 111111111 11122332211 112345677778999999999999999887765543332211
Q ss_pred ccCCCeEEEEEcCCCcEEEEEeecC
Q 002615 818 CLSIDRLVCICTSSGSIHILRVNLD 842 (900)
Q Consensus 818 ~~~~~~~l~~g~~~G~v~~~d~~~~ 842 (900)
+...-+.+.+++-+|.|-++...+.
T Consensus 305 ~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 305 CPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred cCCCcchhhhheeccceeeeeeecC
Confidence 1112457777888999999988765
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.61 Score=47.93 Aligned_cols=282 Identities=16% Similarity=0.165 Sum_probs=132.1
Q ss_pred EEEEEeeC----CEEEEEECC--CCcEEEEEec--CCceeeeeeEeCCCCEEEEecC---CCeE--EEEECCCCeEEEe-
Q 002615 601 QVVVGCYK----GKIYFLDYL--TGDIYWTFQT--CGEVKCQPVVDAPRQLIWCGSH---DHNL--YALDFRNYRCVYK- 666 (900)
Q Consensus 601 ~i~vg~~d----g~l~~~d~~--tG~~~w~~~~--~~~~~~~~~~~~~~~~i~~gs~---dg~l--~~~d~~~g~~~w~- 666 (900)
.+|+|++. ..||.|+.. +|++ |..+. .....+...+.++.+.+|++-. +|++ |.+|..+|+....
T Consensus 4 ~~YiGtyT~~~s~gI~v~~ld~~~g~l-~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln 82 (346)
T COG2706 4 TVYIGTYTKRESQGIYVFNLDTKTGEL-SLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLN 82 (346)
T ss_pred EEEEeeecccCCCceEEEEEeCccccc-chhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEee
Confidence 58888875 468777655 4443 22111 1122233456666678888743 4555 5556666765433
Q ss_pred -eccCCccccCceeeccCCEEEEEeCC-CcEEEEEcCCCCceeeeEee-----cC-------CcceeeeeeeeCCCEEEE
Q 002615 667 -LPCGGSIFGSPAIDEVHDVLYVASTS-GRLTAISVKALPFHTLWLHE-----LE-------VPAFASLCITSANRHVIC 732 (900)
Q Consensus 667 -~~~~~~~~~~~~~~~~~~~l~v~t~~-g~l~~~~~~~~~g~~~w~~~-----~~-------~~~~~s~~~~~~~~~i~~ 732 (900)
....+......+++.++..|++++.. |.+..+-+++ .|.+.-... .. .+......+.+++.++++
T Consensus 83 ~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~-dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v 161 (346)
T COG2706 83 RQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQA-DGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVV 161 (346)
T ss_pred ccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEccc-CCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEE
Confidence 33344433455667766788888865 4455555543 243221111 11 011123345566667776
Q ss_pred Eee-cCcEEEEC-CCCCEEeeecCCCceecccc--ccccCCCeEEEEee-CCeEEEEeCCC--CceeeE--E-ecCCcee
Q 002615 733 CLV-DGHVVALD-SSGSIIWRCRTGGPIFAGPC--TSFALPSQVLICSR-NGSIYSFEQES--GNLLWE--Y-SVGDPIT 802 (900)
Q Consensus 733 ~~~-~g~v~~~d-~~G~~~w~~~~~~~~~~~~~--~~~~~~~~l~~g~~-dg~l~~~d~~t--G~~~w~--~-~~~~~~~ 802 (900)
..- ...++.|+ .+|++.-.....-+.-+.|- +........|+.+. +++|-+|..+. |++.-- . .++....
T Consensus 162 ~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~ 241 (346)
T COG2706 162 PDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFT 241 (346)
T ss_pred eecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccC
Confidence 542 34688888 77765322111111112221 11112345565543 66666655443 544311 1 1111110
Q ss_pred cccccccccccccccccCCCeEEEEEcCC-CcEEEEEeecCcccccccccccceeeeeeeccCCccccCcee--eCCEEE
Q 002615 803 ASAYIDEHLQLKLESCLSIDRLVCICTSS-GSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVF 879 (900)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~-G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~--~~~~l~ 879 (900)
...... .-....+++++|++... ..|.+|..... .++ ..........+..-....+ .++.|+
T Consensus 242 g~~~~a------aIhis~dGrFLYasNRg~dsI~~f~V~~~-~g~--------L~~~~~~~teg~~PR~F~i~~~g~~Li 306 (346)
T COG2706 242 GTNWAA------AIHISPDGRFLYASNRGHDSIAVFSVDPD-GGK--------LELVGITPTEGQFPRDFNINPSGRFLI 306 (346)
T ss_pred CCCcee------EEEECCCCCEEEEecCCCCeEEEEEEcCC-CCE--------EEEEEEeccCCcCCccceeCCCCCEEE
Confidence 000000 01123447788887642 24666655422 110 1222222333321111122 456777
Q ss_pred EeeeCC---eEEEEEcccccccc
Q 002615 880 VGCRDD---YIYCIALETQHLEE 899 (900)
Q Consensus 880 vg~~dg---~l~~ld~~tg~~~~ 899 (900)
+...++ .+|..|.+||++..
T Consensus 307 aa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 307 AANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred EEccCCCcEEEEEEcCCCceEEe
Confidence 765432 35666888888753
|
|
| >PRK09184 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0028 Score=52.05 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHhcccCC-----cccccCCCccc--cCcchHHHHHHHHHh----CCCc-----hhhhcCCCHHHHHHHHH
Q 002615 359 SDLLQVIRKAFGHALMV-----EEVLHHDNFFT--MGGNSIAAAHVAHNL----GIDM-----RLIYNFPTPSKLEIALL 422 (900)
Q Consensus 359 ~~~~~~~~~~~~~~l~~-----~~i~~~~~Ff~--lGgdSl~a~~l~~~l----~~~~-----~~~~~~~t~~~l~~~l~ 422 (900)
+++++.++++..+.|++ ++|..+..||. +|.|||.++.|...+ ++.+ ..+..++|++.|+.+|.
T Consensus 5 ~~l~~~l~~~I~e~l~~~~i~~~~I~~d~~l~~~dLglDSld~velv~~lE~~fgi~i~~~~~~~~~~~~TV~~l~~~I~ 84 (89)
T PRK09184 5 TALERELAELIVEELNLEDVQPESIDADAPLYGEGLGLDSIDILEIALVISKRYGFQLRSDNPDNQRIFASLRALAAYVA 84 (89)
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHCCCCcccccccCCCcHHHHHHHHHHHHHHHCCcCCCcchhhhhccCCHHHHHHHHH
Confidence 46788899999888874 46899999866 999999999987654 4544 33667899999999997
Q ss_pred hhc
Q 002615 423 EKK 425 (900)
Q Consensus 423 ~~~ 425 (900)
.+.
T Consensus 85 ~~~ 87 (89)
T PRK09184 85 AHR 87 (89)
T ss_pred Hhh
Confidence 643
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.03 Score=60.56 Aligned_cols=120 Identities=8% Similarity=0.052 Sum_probs=93.1
Q ss_pred ceEEEEecCCCeEEEEECCCCcEEEEEecCCc--eeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeee
Q 002615 557 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGR--IECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 634 (900)
Q Consensus 557 ~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~--~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 634 (900)
...+..|+..|.|..|+...|++.|++..+.. .........+-+.+|.++.|+.+..|+.+++...-.+......+++
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~s 149 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSS 149 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccce
Confidence 34577799999999999999999999875432 2223333445567999999999999999999887666666667777
Q ss_pred eeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCce
Q 002615 635 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPA 678 (900)
Q Consensus 635 ~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~ 678 (900)
.++.++++.+.+++ +.|..||.++++++-+|..++...++..
T Consensus 150 l~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~ 191 (541)
T KOG4547|consen 150 LCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLS 191 (541)
T ss_pred EEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEE
Confidence 78888777777775 5799999999999999988776555443
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.52 Score=50.36 Aligned_cols=213 Identities=15% Similarity=0.150 Sum_probs=113.3
Q ss_pred eEEEEECCCCcEEEEEecCCce-eecee---Eec----CCCEEEEEee---------C-CEEEEEECCCC-----cE--E
Q 002615 568 KFICADAKRSSVLWEIKLEGRI-ECSAA---VLA----DFSQVVVGCY---------K-GKIYFLDYLTG-----DI--Y 622 (900)
Q Consensus 568 ~l~~~d~~tG~~~w~~~~~~~~-~~~~~---~~~----~~~~i~vg~~---------d-g~l~~~d~~tG-----~~--~ 622 (900)
.|..+|..+.+.+-.+.+...- ..+.+ +.. ...+++||+. . |.|+.|+..+. ++ +
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 4788888888887776665431 11111 222 1457888874 2 88999998874 22 3
Q ss_pred EEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCe-EEEeeccCCcc-ccCceeeccCCEEEEEeCCCcEEEEEc
Q 002615 623 WTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR-CVYKLPCGGSI-FGSPAIDEVHDVLYVASTSGRLTAISV 700 (900)
Q Consensus 623 w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~-~~w~~~~~~~~-~~~~~~~~~~~~l~v~t~~g~l~~~~~ 700 (900)
......+.+.+...+ ++.++++. ++.|+.++....+ ..-........ ..+.... ++.+++|.....+..+..
T Consensus 83 ~~~~~~g~V~ai~~~---~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF---NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEESS-EEEEEEE---TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEeecCcceEhhhh---CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 344556666554444 35666655 5678888877766 44443333322 2222233 489999998777776643
Q ss_pred CCCCceeeeEe-ecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-C-C------CC--E--EeeecCCCceecc---ccc
Q 002615 701 KALPFHTLWLH-ELEVPAFASLCITSANRHVICCLVDGHVVALD-S-S------GS--I--IWRCRTGGPIFAG---PCT 764 (900)
Q Consensus 701 ~~~~g~~~w~~-~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~-~------G~--~--~w~~~~~~~~~~~---~~~ 764 (900)
+....+...-- +.......+..+..+++.++++..+|.++.+. . + +. . +-.+..+..+.+. ...
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~ 236 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLI 236 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEee
Confidence 32112222211 12222223334442445888888889988876 2 1 22 1 2333444443332 111
Q ss_pred cc-cCC-----CeEEEEeeCCeEEEEeC
Q 002615 765 SF-ALP-----SQVLICSRNGSIYSFEQ 786 (900)
Q Consensus 765 ~~-~~~-----~~l~~g~~dg~l~~~d~ 786 (900)
.. ... ..++.+|.+|.++++-+
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l~p 264 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGVLIP 264 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred ecCCCCcccccceEEEEecCCEEEEEEe
Confidence 11 111 24889999999997765
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.34 Score=52.98 Aligned_cols=195 Identities=16% Similarity=0.128 Sum_probs=126.1
Q ss_pred CCceEEEEecC-CCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEee---CCEEEEEECCCCcEEEEEecCCc
Q 002615 555 DSDIYLFVGSH-SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY---KGKIYFLDYLTGDIYWTFQTCGE 630 (900)
Q Consensus 555 ~~~~~v~igs~-~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~---dg~l~~~d~~tG~~~w~~~~~~~ 630 (900)
..+.++|+.+. ++.+..+|..+-++.-....+. ......++.+++.+|+... ++.+..+|..++++.-....+..
T Consensus 83 ~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~ 161 (381)
T COG3391 83 PAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNT 161 (381)
T ss_pred CCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCC
Confidence 34666887764 4779999988777665555443 2335678888889999876 68999999999988766555432
Q ss_pred eeeeeeEeCCCCEEEEec-CCCeEEEEECCCCeEE-EeeccC---CccccCceeeccCCEEEEEeCC---CcEEEEEcCC
Q 002615 631 VKCQPVVDAPRQLIWCGS-HDHNLYALDFRNYRCV-YKLPCG---GSIFGSPAIDEVHDVLYVASTS---GRLTAISVKA 702 (900)
Q Consensus 631 ~~~~~~~~~~~~~i~~gs-~dg~l~~~d~~~g~~~-w~~~~~---~~~~~~~~~~~~~~~l~v~t~~---g~l~~~~~~~ 702 (900)
. ...+++++++.+|+.. .++.+..+|.++-... +..... +..-....+..++..+|+.... +.+..+|..+
T Consensus 162 P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~ 240 (381)
T COG3391 162 P-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT 240 (381)
T ss_pred c-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC
Confidence 2 4456677778788875 6788999996654444 221111 1112233455566778887655 4888888777
Q ss_pred CCceeeeEe-ecCCcceeeeeeeeCCCEEEEEeec-CcEEEEC-CCCCEEeeec
Q 002615 703 LPFHTLWLH-ELEVPAFASLCITSANRHVICCLVD-GHVVALD-SSGSIIWRCR 753 (900)
Q Consensus 703 ~~g~~~w~~-~~~~~~~~s~~~~~~~~~i~~~~~~-g~v~~~d-~~G~~~w~~~ 753 (900)
+...+.. .............+++..+|+.... +.+..+| .+..+.-...
T Consensus 241 --~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 241 --GNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred --ceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 7776652 2222112234556677888887543 7888888 6666554443
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.013 Score=57.73 Aligned_cols=146 Identities=16% Similarity=0.136 Sum_probs=79.8
Q ss_pred ceEEEEecCCCeEEEEECCCCcEEE--EEecCCceeeceeEec-CCCEEEEEeeCCEEEEEECC-CCcEEEE-EecCCce
Q 002615 557 DIYLFVGSHSHKFICADAKRSSVLW--EIKLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYL-TGDIYWT-FQTCGEV 631 (900)
Q Consensus 557 ~~~v~igs~~g~l~~~d~~tG~~~w--~~~~~~~~~~~~~~~~-~~~~i~vg~~dg~l~~~d~~-tG~~~w~-~~~~~~~ 631 (900)
+..++++-..|.+...+-..+.+.- +.+.+.--...+.++. +.+.+|.|+.||.+.+||.+ .++.+|+ .+.+..-
T Consensus 133 ~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 133 GTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred CceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 3346666666655544433332221 1112221111233332 33579999999999999988 6778887 3344333
Q ss_pred eeeeeEe-CCCCEEEEecCCCeEEEEECCC-CeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCC
Q 002615 632 KCQPVVD-APRQLIWCGSHDHNLYALDFRN-YRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKA 702 (900)
Q Consensus 632 ~~~~~~~-~~~~~i~~gs~dg~l~~~d~~~-g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~ 702 (900)
+++.... +....|++|++|..+..||.++ |+++.....+|.++...-.....+.++++....+....+.+.
T Consensus 213 V~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~ 285 (339)
T KOG0280|consen 213 VVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSD 285 (339)
T ss_pred eEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecc
Confidence 3332222 2345799999999999999884 566666666555543221111123444444333355555444
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.015 Score=59.17 Aligned_cols=150 Identities=16% Similarity=0.145 Sum_probs=94.8
Q ss_pred cccccceEEeeCCceEEEEecCCCeEEEEECCCCcEEEEEecCC------ceeeceeEecCC-CEEEEEeeCCEEEEEEC
Q 002615 544 CVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEG------RIECSAAVLADF-SQVVVGCYKGKIYFLDY 616 (900)
Q Consensus 544 ~v~~sp~v~~~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~------~~~~~~~~~~~~-~~i~vg~~dg~l~~~d~ 616 (900)
.++-||. ..+.+..|...+.|+.|-+.+|. |.+.-.. .++ -...++.. +.+..++-||.|..||.
T Consensus 216 ~LdWSp~-----~~g~LlsGDc~~~I~lw~~~~g~--W~vd~~Pf~gH~~SVE-DLqWSptE~~vfaScS~DgsIrIWDi 287 (440)
T KOG0302|consen 216 GLDWSPI-----KTGRLLSGDCVKGIHLWEPSTGS--WKVDQRPFTGHTKSVE-DLQWSPTEDGVFASCSCDGSIRIWDI 287 (440)
T ss_pred eeecccc-----cccccccCccccceEeeeeccCc--eeecCccccccccchh-hhccCCccCceEEeeecCceEEEEEe
Confidence 3566774 36777777777789999998876 8754221 121 23344433 34555667999999999
Q ss_pred CCCcE---EEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCC---CeEEEeeccCCccccCceeecc-CCEEEEE
Q 002615 617 LTGDI---YWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRN---YRCVYKLPCGGSIFGSPAIDEV-HDVLYVA 689 (900)
Q Consensus 617 ~tG~~---~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~---g~~~w~~~~~~~~~~~~~~~~~-~~~l~v~ 689 (900)
++|.. +.+...++.+. ..-+......|..|+.||++..||+++ ++++-.++.+...+++....+. ...+.++
T Consensus 288 Rs~~~~~~~~~kAh~sDVN-VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaas 366 (440)
T KOG0302|consen 288 RSGPKKAAVSTKAHNSDVN-VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAAS 366 (440)
T ss_pred cCCCccceeEeeccCCcee-eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEec
Confidence 99833 32222222221 122333334688899999999999865 5566666666655555555432 3456677
Q ss_pred eCCCcEEEEEcCC
Q 002615 690 STSGRLTAISVKA 702 (900)
Q Consensus 690 t~~g~l~~~~~~~ 702 (900)
+.+..+..||+..
T Consensus 367 g~D~QitiWDlsv 379 (440)
T KOG0302|consen 367 GEDNQITIWDLSV 379 (440)
T ss_pred cCCCcEEEEEeec
Confidence 7888899998663
|
|
| >smart00564 PQQ beta-propeller repeat | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0023 Score=41.58 Aligned_cols=28 Identities=36% Similarity=0.599 Sum_probs=25.6
Q ss_pred CceEEEEecCCCeEEEEECCCCcEEEEE
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWEI 583 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~~~w~~ 583 (900)
.++.+|+++.+|.|+++|..+|+.+|++
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 4668999999999999999999999985
|
Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases. |
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.18 Score=52.89 Aligned_cols=143 Identities=14% Similarity=0.089 Sum_probs=84.5
Q ss_pred CEEEEEeeCCEEEEEECCCCcE-------EEEEecCCceeeeeeEeCCC-CEEEEecCCCeEEEEECCCC--eEEEeecc
Q 002615 600 SQVVVGCYKGKIYFLDYLTGDI-------YWTFQTCGEVKCQPVVDAPR-QLIWCGSHDHNLYALDFRNY--RCVYKLPC 669 (900)
Q Consensus 600 ~~i~vg~~dg~l~~~d~~tG~~-------~w~~~~~~~~~~~~~~~~~~-~~i~~gs~dg~l~~~d~~~g--~~~w~~~~ 669 (900)
+.+..++.|+.+..||...... .-.+..+..+.--..+.... ..+-..+.|+.|..||.+++ ++......
T Consensus 191 g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a 270 (422)
T KOG0264|consen 191 GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA 270 (422)
T ss_pred eeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc
Confidence 5788889999999999764322 12233333333222233222 33344577899999999852 33333333
Q ss_pred CCccccCceeecc-CCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEE-EEeecCcEEEEC
Q 002615 670 GGSIFGSPAIDEV-HDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVI-CCLVDGHVVALD 743 (900)
Q Consensus 670 ~~~~~~~~~~~~~-~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~-~~~~~g~v~~~d 743 (900)
+..-..+..+.+- +..|..|+.+++|..||+++.. +.+.....+.........++....++ +++.|+++.++|
T Consensus 271 h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~-~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWD 345 (422)
T KOG0264|consen 271 HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN-KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWD 345 (422)
T ss_pred cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc-cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEe
Confidence 3333333334332 3456667789999999998732 34555555555555555556655554 455789999999
|
|
| >KOG2103 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.04 Score=62.00 Aligned_cols=119 Identities=9% Similarity=0.156 Sum_probs=75.1
Q ss_pred ccccccccccccceEEeeCCceEEEEecCCCeEEEEECCCCcEEEEEecCCceee-ceeEecCCCEEEEEeeCCEEEEEE
Q 002615 537 WKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIEC-SAAVLADFSQVVVGCYKGKIYFLD 615 (900)
Q Consensus 537 W~~~~~~~v~~sp~v~~~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~-~~~~~~~~~~i~vg~~dg~l~~~d 615 (900)
|+...-+....+.+. ......++++.+..|.+..+|+.||++.|+...+..... ...+. -++......++.||
T Consensus 28 wr~~~vG~~k~~~~~-~~t~~~rlivsT~~~vlAsL~~~tGei~WRqvl~~~~~~~~~~~~-----~~iS~dg~~lr~wn 101 (910)
T KOG2103|consen 28 WRQQLVGVKKVNFLV-YDTKSKRLIVSTEKGVLASLNLRTGEIIWRQVLEPKTSGLGVPLT-----NTISVDGRYLRSWN 101 (910)
T ss_pred hhhhcccceeEEEEe-ecCCCceEEEEeccchhheecccCCcEEEEEeccCCCcccCccee-----EEEccCCcEEEeec
Confidence 776654433333333 445678999999999999999999999999876643211 11111 13333334689999
Q ss_pred CCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeecc
Q 002615 616 YLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC 669 (900)
Q Consensus 616 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~ 669 (900)
..+|...|........... .+....+..+.+. +..+.|+..|+...
T Consensus 102 ~~~g~l~~~i~l~~g~~~~-~~~v~~~i~v~~g-------~~~~~g~l~w~~~~ 147 (910)
T KOG2103|consen 102 TNNGILDWEIELADGFKGL-LLEVNKGIAVLNG-------HTRKFGELKWVESF 147 (910)
T ss_pred CCCceeeeeccccccccee-EEEEccceEEEcc-------eeccccceeehhhc
Confidence 9999999998876653222 2222233333322 45567888887654
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.012 Score=63.64 Aligned_cols=188 Identities=13% Similarity=0.054 Sum_probs=108.5
Q ss_pred CceEEEEecCCCeEEEEECCCCcEEE-------EEecCCceeeceeEec-CCCEEEEEeeCCEEEEEECCCCcEEEEEec
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLW-------EIKLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDIYWTFQT 627 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~~~w-------~~~~~~~~~~~~~~~~-~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~ 627 (900)
+..++.+++.+|.|..|-...+-.-- .+..+..-.++.-+.+ ..+.+.+.+||-+|..||+.+++..-++..
T Consensus 639 D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~g 718 (1012)
T KOG1445|consen 639 DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVG 718 (1012)
T ss_pred ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheecc
Confidence 46688899999988888765542211 1112221112222222 123567789999999999999998877776
Q ss_pred CCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeE-EEeeccCCccc-cCceeeccCCEEEEEeC----CCcEEEEEcC
Q 002615 628 CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRC-VYKLPCGGSIF-GSPAIDEVHDVLYVAST----SGRLTAISVK 701 (900)
Q Consensus 628 ~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~-~w~~~~~~~~~-~~~~~~~~~~~l~v~t~----~g~l~~~~~~ 701 (900)
+..-.-..++++++..+.+.+.||.|++|++.+++. ++.-+...... +-....-++..+++... ...+..||.+
T Consensus 719 HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 719 HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQ 798 (1012)
T ss_pred CcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhh
Confidence 665556667888888899999999999999988753 33222111111 11111112244444332 3456677777
Q ss_pred CCCceeeeEeecCC-cceeeeeeeeCCCEEEEEe-ecCcEEEEC
Q 002615 702 ALPFHTLWLHELEV-PAFASLCITSANRHVICCL-VDGHVVALD 743 (900)
Q Consensus 702 ~~~g~~~w~~~~~~-~~~~s~~~~~~~~~i~~~~-~~g~v~~~d 743 (900)
+..+..+....... +...-+....+.+.+++.+ .|..|++|.
T Consensus 799 ~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yE 842 (1012)
T KOG1445|consen 799 TLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYE 842 (1012)
T ss_pred hccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEE
Confidence 65556665544321 1112233344455555544 355677775
|
|
| >PRK12449 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0044 Score=50.38 Aligned_cols=66 Identities=9% Similarity=0.098 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHhcccCC--cccccCCCcc-ccCcchHHHHHHHHHh------CCCchhhhcCCCHHHHHHHHHhh
Q 002615 359 SDLLQVIRKAFGHALMV--EEVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 424 (900)
Q Consensus 359 ~~~~~~~~~~~~~~l~~--~~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~~t~~~l~~~l~~~ 424 (900)
+++.+.+++++++.++. ..+..+.+|. ++|-||+..+.|...+ .++...+.+.+|+..++.+|..+
T Consensus 4 ~~i~~~l~~il~~~~~~~~~~i~~~~~l~~dlg~DSl~~~~li~~lE~~f~i~i~~~~~~~~~ti~~l~~~l~~~ 78 (80)
T PRK12449 4 EEIFERLINLIQKQRSYLSLAITEQTHLKDDLAVDSIELVEFIINVEDEFHIAIPDEDVEDMVSMGDLLDYLVQR 78 (80)
T ss_pred HHHHHHHHHHHHHHhCCCccccCCCCcHHHHcCCcHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHHHh
Confidence 46778888999988876 4688899995 9999999999987654 36777899999999999999764
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.066 Score=59.35 Aligned_cols=109 Identities=16% Similarity=0.260 Sum_probs=70.7
Q ss_pred eEecCCCEEEEEeeCCEEEEEECCCCcEEEEEe-cCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCC---eEEEeecc
Q 002615 594 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQ-TCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY---RCVYKLPC 669 (900)
Q Consensus 594 ~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g---~~~w~~~~ 669 (900)
+++..++++.+|+..|.||.|+-..|+.+.... ....+.+...+.+...++.+|+..|.|..+-...+ .......+
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~ 119 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPC 119 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccc
Confidence 556666789999999999999977776543322 12334445555666667777888777766644432 22222222
Q ss_pred C---CccccCceeeccCCEEEEEeCCCcEEEEEcCC
Q 002615 670 G---GSIFGSPAIDEVHDVLYVASTSGRLTAISVKA 702 (900)
Q Consensus 670 ~---~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~ 702 (900)
+ +...+....+.++-.+|.|...|.|.+..++.
T Consensus 120 d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 120 DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 2 33445555666677899999999998877664
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.37 Score=52.99 Aligned_cols=158 Identities=18% Similarity=0.205 Sum_probs=95.4
Q ss_pred ceeEecCCCEE-EEEeeC---CEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEE-EEecCCC--eEEEEECCCCeEE
Q 002615 592 SAAVLADFSQV-VVGCYK---GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI-WCGSHDH--NLYALDFRNYRCV 664 (900)
Q Consensus 592 ~~~~~~~~~~i-~vg~~d---g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i-~~gs~dg--~l~~~d~~~g~~~ 664 (900)
.+..++++..+ |+.-+. ..+|.+|..+|+..-.....+ ....|.+.+++..| ++...|| .||.+|..++. +
T Consensus 197 ~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g-~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~ 274 (425)
T COG0823 197 TPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG-NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-L 274 (425)
T ss_pred ccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCC-ccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-c
Confidence 45566655443 232222 358999999887655444333 33445666665554 4445454 48999988776 5
Q ss_pred EeeccCCccccCceeeccCCEEEEEeCCC---cEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeec-Cc--
Q 002615 665 YKLPCGGSIFGSPAIDEVHDVLYVASTSG---RLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVD-GH-- 738 (900)
Q Consensus 665 w~~~~~~~~~~~~~~~~~~~~l~v~t~~g---~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~-g~-- 738 (900)
++......+...|.+.+++..|++.+..+ .|+.+|.+. +..-++.........+.+.++++.+...+.. |.
T Consensus 275 ~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g---~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~ 351 (425)
T COG0823 275 PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEG---SQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWD 351 (425)
T ss_pred eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCC---CceeEeeccCCCCcCccCCCCCCEEEEEeccCCcee
Confidence 56555556666888888888888777543 577777774 4334444443333466777788877776643 33
Q ss_pred EEEEC-CCCCEEeeecCC
Q 002615 739 VVALD-SSGSIIWRCRTG 755 (900)
Q Consensus 739 v~~~d-~~G~~~w~~~~~ 755 (900)
+..+| .+|.. |+.-..
T Consensus 352 i~~~~~~~~~~-~~~lt~ 368 (425)
T COG0823 352 IDKNDLASGGK-IRILTS 368 (425)
T ss_pred eEEeccCCCCc-EEEccc
Confidence 66666 55543 554433
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.074 Score=61.59 Aligned_cols=205 Identities=14% Similarity=0.212 Sum_probs=107.7
Q ss_pred CCEEEEecCCCeEEEEECCCCeEEEeeccCCc---cccCceeecc--CCEEEEEeCCCcEEEEEcCCCCceeeeEeecCC
Q 002615 641 RQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS---IFGSPAIDEV--HDVLYVASTSGRLTAISVKALPFHTLWLHELEV 715 (900)
Q Consensus 641 ~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~---~~~~~~~~~~--~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~ 715 (900)
...++++.....+..||-+.++++-.|+.+.. ..+...+.+. ...+++++.||.|..|+. ....|. .
T Consensus 1076 ~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~----y~~~~~----~ 1147 (1387)
T KOG1517|consen 1076 EPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD----YADKWK----K 1147 (1387)
T ss_pred CceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc----cccccC----C
Confidence 34566666566788999888888877766532 2233333221 235788888998888762 223331 1
Q ss_pred cceeeeeeeeCCCEEEEEeecCcEEEECCCCCE-EeeecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeE
Q 002615 716 PAFASLCITSANRHVICCLVDGHVVALDSSGSI-IWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWE 794 (900)
Q Consensus 716 ~~~~s~~~~~~~~~i~~~~~~g~v~~~d~~G~~-~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~ 794 (900)
+...+ +...-.+.+.... .+|-+ -|+. ..|.+++++.-..|..||....++.-.
T Consensus 1148 ~eLVT-aw~~Ls~~~~~~r---------~~~~v~dWqQ---------------~~G~Ll~tGd~r~IRIWDa~~E~~~~d 1202 (1387)
T KOG1517|consen 1148 PELVT-AWSSLSDQLPGAR---------GTGLVVDWQQ---------------QSGHLLVTGDVRSIRIWDAHKEQVVAD 1202 (1387)
T ss_pred ceeEE-eeccccccCccCC---------CCCeeeehhh---------------hCCeEEecCCeeEEEEEecccceeEee
Confidence 10000 0000001111100 11211 1322 234566665556789999887666655
Q ss_pred EecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecCcccccccccccceeeeeeeccCCccccCceee
Q 002615 795 YSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMI 874 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~~ 874 (900)
+..++....+... .....++.+++|..||.|++||.+.... +..+..+....-...++.--+-.
T Consensus 1203 iP~~s~t~vTaLS---------~~~~~gn~i~AGfaDGsvRvyD~R~a~~-------ds~v~~~R~h~~~~~Iv~~slq~ 1266 (1387)
T KOG1517|consen 1203 IPYGSSTLVTALS---------ADLVHGNIIAAGFADGSVRVYDRRMAPP-------DSLVCVYREHNDVEPIVHLSLQR 1266 (1387)
T ss_pred cccCCCccceeec---------ccccCCceEEEeecCCceEEeecccCCc-------cccceeecccCCcccceeEEeec
Confidence 5444322111111 1223378999999999999999875421 12222222221111111110111
Q ss_pred --CCEEEEeeeCCeEEEEEccc
Q 002615 875 --GGRVFVGCRDDYIYCIALET 894 (900)
Q Consensus 875 --~~~l~vg~~dg~l~~ld~~t 894 (900)
-++|+.||.+|-++.||+..
T Consensus 1267 ~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1267 QGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred CCCcceeeeccCCeEEEEeccc
Confidence 24799999999999999876
|
|
| >TIGR00517 acyl_carrier acyl carrier protein | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0054 Score=49.40 Aligned_cols=66 Identities=15% Similarity=0.234 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHhcccCCc--ccccCCCcc-ccCcchHHHHHHHHHh------CCCchhhhcCCCHHHHHHHHHhh
Q 002615 359 SDLLQVIRKAFGHALMVE--EVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 424 (900)
Q Consensus 359 ~~~~~~~~~~~~~~l~~~--~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~~t~~~l~~~l~~~ 424 (900)
+++.+.+++++++.++.+ .+..+.+|+ ++|.|||..+.|...+ .++...+...+|+..++.++.++
T Consensus 2 ~~i~~~l~~il~~~~~~~~~~i~~~~~l~~dlglDSl~~veli~~lE~~f~i~i~~~~~~~~~tv~~l~~~i~~~ 76 (77)
T TIGR00517 2 QEIFEKVKAIIKEQLNVDEDQVTPDASFVEDLGADSLDTVELVMALEEEFDIEIPDEEAEKIATVGDAVDYIEEN 76 (77)
T ss_pred hHHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCCCCHHHHHHCCcHHHHHHHHHhc
Confidence 356778888888888774 588888986 6999999999987654 36677889999999999998753
|
S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site. |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.19 Score=52.05 Aligned_cols=69 Identities=14% Similarity=0.122 Sum_probs=52.8
Q ss_pred ceeEecC-CCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCC
Q 002615 592 SAAVLAD-FSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRN 660 (900)
Q Consensus 592 ~~~~~~~-~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~ 660 (900)
...+++. .+.+.+++.+..|..+|.++-...-.+..+..+.++.---++...||.|..+|.|+.||...
T Consensus 198 dlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 198 DLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred hhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 4455554 34688888899999999999888877777766665543334567899999999999999865
|
|
| >PRK05883 acyl carrier protein; Validated | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0076 Score=49.94 Aligned_cols=70 Identities=19% Similarity=0.174 Sum_probs=58.1
Q ss_pred ccchHHHHHHHHHHhcccCC--cccccCCCcc-ccCcchHHHHHHHHHh------CCCchhhhcCCCHHHHHHHHHhhc
Q 002615 356 TKASDLLQVIRKAFGHALMV--EEVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 425 (900)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~--~~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~~t~~~l~~~l~~~~ 425 (900)
...+++.+.+.+++++.|++ ..|..+++|+ ++|-|||..+.+...| +++...+...+|+..|..++..+.
T Consensus 10 ~~~~~I~~~l~~iia~~l~v~~~~I~~d~~l~~dlg~DSL~~v~lv~~lE~~fgI~i~~ee~~~~~TV~dl~~~v~~~~ 88 (91)
T PRK05883 10 SSPSTVSATLLSILRDDLNVDLTRVTPDARLVDDVGLDSVAFAVGMVAIEERLGVALSEEDLLSCDTVGDLEAAIAAKV 88 (91)
T ss_pred CCHHHHHHHHHHHHHHHhCCChhhCCCCCchhhccCCChHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHHc
Confidence 34567889999999999987 4688999995 7999999988876544 477788999999999999998754
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.77 Score=47.80 Aligned_cols=223 Identities=14% Similarity=0.136 Sum_probs=106.7
Q ss_pred CceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEE----------
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTF---------- 625 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~---------- 625 (900)
.+..|++|+.+| |+.++.... ..|.......-.....+.++-+.+++-+ |+.|+.++..+-...-..
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~-~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDP-SKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCC-ccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 578999999998 999998322 2232222211123445555555555554 688999987654332210
Q ss_pred ---ecC--Cceeeee--eEeCCCCEEEEecCCCeEEEEECCC--C---eEEEeeccCCccccCceeeccCCEEEEEeCCC
Q 002615 626 ---QTC--GEVKCQP--VVDAPRQLIWCGSHDHNLYALDFRN--Y---RCVYKLPCGGSIFGSPAIDEVHDVLYVASTSG 693 (900)
Q Consensus 626 ---~~~--~~~~~~~--~~~~~~~~i~~gs~dg~l~~~d~~~--g---~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g 693 (900)
... ..+.... ........+.++. ...+..|.... . +....+.....+.+. ... ++.+++|+.++
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i-~~~--~~~i~v~~~~~ 158 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPPSSI-AFL--GNKICVGTSKG 158 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCcEEE-EEe--CCEEEEEeCCc
Confidence 111 1111111 0011122233333 33544443322 1 344445555433332 222 48899998665
Q ss_pred cEEEEEcCCCCceeeeEeecCCcc---------eeee-eeeeCCCEEEEEeecCcEEEECCCCC------EEeeecCCCc
Q 002615 694 RLTAISVKALPFHTLWLHELEVPA---------FASL-CITSANRHVICCLVDGHVVALDSSGS------IIWRCRTGGP 757 (900)
Q Consensus 694 ~l~~~~~~~~~g~~~w~~~~~~~~---------~~s~-~~~~~~~~i~~~~~~g~v~~~d~~G~------~~w~~~~~~~ 757 (900)
...+|+++ +....-....... ...+ .+...++.+.++. +..-..+|.+|+ +.|......-
T Consensus 159 -f~~idl~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~-~~~g~fv~~~G~~~r~~~i~W~~~p~~~ 234 (275)
T PF00780_consen 159 -FYLIDLNT--GSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY-DNIGVFVNKNGEPSRKSTIQWSSAPQSV 234 (275)
T ss_pred -eEEEecCC--CCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe-cceEEEEcCCCCcCcccEEEcCCchhEE
Confidence 88889886 5443332221111 0011 1122223444443 333334454453 2343321111
Q ss_pred eeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEEecC
Q 002615 758 IFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVG 798 (900)
Q Consensus 758 ~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~ 798 (900)
.+ ....|++.. ++.+..++..+|+++-.+...
T Consensus 235 ~~--------~~pyli~~~-~~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 235 AY--------SSPYLIAFS-SNSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred EE--------ECCEEEEEC-CCEEEEEECcCCcEEEEEECC
Confidence 11 123455544 456999999999987766544
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.1 Score=58.84 Aligned_cols=142 Identities=18% Similarity=0.259 Sum_probs=80.9
Q ss_pred CCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCce---eeeeeEeCCCC
Q 002615 566 SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV---KCQPVVDAPRQ 642 (900)
Q Consensus 566 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~---~~~~~~~~~~~ 642 (900)
.+..+++|.+ |.++|...............++| .+++++. ..++.+| -.|+++|.+..+... .......++++
T Consensus 127 ~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG-~ll~~~~-~~~~e~D-~~G~v~~~~~l~~~~~~~HHD~~~l~nGn 202 (477)
T PF05935_consen 127 SSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNG-NLLIGSG-NRLYEID-LLGKVIWEYDLPGGYYDFHHDIDELPNGN 202 (477)
T ss_dssp EEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS--EEEEEB-TEEEEE--TT--EEEEEE--TTEE-B-S-EEE-TTS-
T ss_pred CceEEEECCC-ccEEEEEccCccccceeeEcCCC-CEEEecC-CceEEEc-CCCCEEEeeecCCcccccccccEECCCCC
Confidence 5679999975 99999988765432223445554 5555554 7899999 579999998887643 22233344555
Q ss_pred EEEEecC-------------CCeEEEEECCCCeEEEeeccCCcc---------------------------ccCceeecc
Q 002615 643 LIWCGSH-------------DHNLYALDFRNYRCVYKLPCGGSI---------------------------FGSPAIDEV 682 (900)
Q Consensus 643 ~i~~gs~-------------dg~l~~~d~~~g~~~w~~~~~~~~---------------------------~~~~~~~~~ 682 (900)
.|+.+.. ...|..+| .+|+++|.+++.... ..+...++.
T Consensus 203 ~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~ 281 (477)
T PF05935_consen 203 LLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPS 281 (477)
T ss_dssp EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETT
T ss_pred EEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCC
Confidence 5555541 34689999 999999987652110 112234444
Q ss_pred CCEEEEEeCCC-cEEEEEcCCCCceeeeEeecC
Q 002615 683 HDVLYVASTSG-RLTAISVKALPFHTLWLHELE 714 (900)
Q Consensus 683 ~~~l~v~t~~g-~l~~~~~~~~~g~~~w~~~~~ 714 (900)
++.|++.+... .|..+|.++ +++.|....+
T Consensus 282 dd~iivSsR~~s~V~~Id~~t--~~i~Wilg~~ 312 (477)
T PF05935_consen 282 DDSIIVSSRHQSAVIKIDYRT--GKIKWILGPP 312 (477)
T ss_dssp TTEEEEEETTT-EEEEEE-TT--S-EEEEES-S
T ss_pred CCeEEEEcCcceEEEEEECCC--CcEEEEeCCC
Confidence 67788877644 789999777 9999988654
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.16 Score=51.97 Aligned_cols=150 Identities=7% Similarity=0.015 Sum_probs=89.2
Q ss_pred ceeEecCCCEEEEEeeCCEEEEEECCCC------cEEEEEec-CCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEE
Q 002615 592 SAAVLADFSQVVVGCYKGKIYFLDYLTG------DIYWTFQT-CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCV 664 (900)
Q Consensus 592 ~~~~~~~~~~i~vg~~dg~l~~~d~~tG------~~~w~~~~-~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~ 664 (900)
...++.++.+++.|..|-.+..|+.+.- +++-.... +....-+..+...+..+|.|..++++..-|.++.+.+
T Consensus 61 AlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi 140 (609)
T KOG4227|consen 61 ALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSI 140 (609)
T ss_pred eeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceee
Confidence 3456677778888888888888875421 22211111 1122334556666778999999999999999999988
Q ss_pred EeeccCC---ccccCceeeccCCEEEEEeCCCcEEEEEcCCCC--ceeeeEeecCCcceeeeeeeeC-CCEEEEEeecCc
Q 002615 665 YKLPCGG---SIFGSPAIDEVHDVLYVASTSGRLTAISVKALP--FHTLWLHELEVPAFASLCITSA-NRHVICCLVDGH 738 (900)
Q Consensus 665 w~~~~~~---~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~--g~~~w~~~~~~~~~~s~~~~~~-~~~i~~~~~~g~ 738 (900)
..+.... .++.- ...+.++.+.+.|.+|.+..||..... ++++--.. ....|.+..+.+. ...+.+.+..++
T Consensus 141 ~V~~~~~~~~~VY~m-~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN-~~~~F~t~~F~P~~P~Li~~~~~~~G 218 (609)
T KOG4227|consen 141 YVANENNNRGDVYHM-DQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN-SGKNFYTAEFHPETPALILVNSETGG 218 (609)
T ss_pred eeecccCcccceeec-ccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC-CCccceeeeecCCCceeEEeccccCC
Confidence 8775532 33321 122235788889999999999976421 22222111 1222333333332 234455555666
Q ss_pred EEEEC
Q 002615 739 VVALD 743 (900)
Q Consensus 739 v~~~d 743 (900)
+.+||
T Consensus 219 ~~~~D 223 (609)
T KOG4227|consen 219 PNVFD 223 (609)
T ss_pred CCcee
Confidence 77776
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.2 Score=56.49 Aligned_cols=145 Identities=16% Similarity=0.232 Sum_probs=80.4
Q ss_pred CCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcc---eeeeeeee
Q 002615 649 HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPA---FASLCITS 725 (900)
Q Consensus 649 ~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~---~~s~~~~~ 725 (900)
.....+.+| .+|.++|............... .++.+++++. ..++.+|.. |+.+|.+...... .......+
T Consensus 126 ~~~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l-~nG~ll~~~~-~~~~e~D~~---G~v~~~~~l~~~~~~~HHD~~~l~ 199 (477)
T PF05935_consen 126 SSSYTYLID-NNGDVRWYLPLDSGSDNSFKQL-PNGNLLIGSG-NRLYEIDLL---GKVIWEYDLPGGYYDFHHDIDELP 199 (477)
T ss_dssp BEEEEEEEE-TTS-EEEEE-GGGT--SSEEE--TTS-EEEEEB-TEEEEE-TT-----EEEEEE--TTEE-B-S-EEE-T
T ss_pred CCceEEEEC-CCccEEEEEccCccccceeeEc-CCCCEEEecC-CceEEEcCC---CCEEEeeecCCcccccccccEECC
Confidence 356789999 6799999987654332221222 3577777775 679999976 8999998887643 34445555
Q ss_pred CCCEEEEEee-------------cCcEEEECCCCCEEeeecCCCce---ec--------------c--------cccc-c
Q 002615 726 ANRHVICCLV-------------DGHVVALDSSGSIIWRCRTGGPI---FA--------------G--------PCTS-F 766 (900)
Q Consensus 726 ~~~~i~~~~~-------------~g~v~~~d~~G~~~w~~~~~~~~---~~--------------~--------~~~~-~ 766 (900)
+++.++.+.. ...|.-+|.+|+++|........ .. . ..+. .
T Consensus 200 nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd 279 (477)
T PF05935_consen 200 NGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD 279 (477)
T ss_dssp TS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred CCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence 5666666652 33577788899999875522111 00 0 0011 1
Q ss_pred cCCCeEEEEeeCC-eEEEEeCCCCceeeEEecCC
Q 002615 767 ALPSQVLICSRNG-SIYSFEQESGNLLWEYSVGD 799 (900)
Q Consensus 767 ~~~~~l~~g~~dg-~l~~~d~~tG~~~w~~~~~~ 799 (900)
..++.|++.++.. .|..+|..+|++.|.+..+.
T Consensus 280 ~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 280 PSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp TTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred CCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 2367788887755 89999999999999886544
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.91 Score=45.77 Aligned_cols=171 Identities=15% Similarity=0.160 Sum_probs=106.8
Q ss_pred CeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECC-CCcEEEEEecCCceeeeeeEeC--CCCE
Q 002615 567 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYL-TGDIYWTFQTCGEVKCQPVVDA--PRQL 643 (900)
Q Consensus 567 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~-tG~~~w~~~~~~~~~~~~~~~~--~~~~ 643 (900)
..|..||-...+++-++.....+. ++.+..+ .|++-- .+.||.|... +-+.+..+++....+....+.+ ....
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~-~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIK-AVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEEecccee-eEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 358889866677776666665553 3445444 555553 6679999876 4566666655332222222222 1223
Q ss_pred EEE-ecCCCeEEEEECCCCeEE--EeeccCCccccCceeeccCCEEEEEeCCCcEE-EEEcCCCCceeeeEeecCCcc--
Q 002615 644 IWC-GSHDHNLYALDFRNYRCV--YKLPCGGSIFGSPAIDEVHDVLYVASTSGRLT-AISVKALPFHTLWLHELEVPA-- 717 (900)
Q Consensus 644 i~~-gs~dg~l~~~d~~~g~~~--w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~-~~~~~~~~g~~~w~~~~~~~~-- 717 (900)
|.+ |-.-|.|...|+..-+.- -.+..+...++...+...+..|..++..|++. .||..+ |+.+.....+...
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~--g~~l~E~RRG~d~A~ 228 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED--GTLLQELRRGVDRAD 228 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC--CcEeeeeecCCchhe
Confidence 333 555688888887654431 23444555666667766566777788888765 578776 8888877655432
Q ss_pred eeeeeeeeCCCEEEEEeecCcEEEEC
Q 002615 718 FASLCITSANRHVICCLVDGHVVALD 743 (900)
Q Consensus 718 ~~s~~~~~~~~~i~~~~~~g~v~~~d 743 (900)
....++.++...+.+++..|+++.|.
T Consensus 229 iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 229 IYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred EEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 34566777777888888899999886
|
|
| >COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.006 Score=45.87 Aligned_cols=50 Identities=24% Similarity=0.255 Sum_probs=42.6
Q ss_pred CcccccCCCccccCcchHHHHHHHHHh-----CCCchhhhcCCCHHHHHHHHHhh
Q 002615 375 VEEVLHHDNFFTMGGNSIAAAHVAHNL-----GIDMRLIYNFPTPSKLEIALLEK 424 (900)
Q Consensus 375 ~~~i~~~~~Ff~lGgdSl~a~~l~~~l-----~~~~~~~~~~~t~~~l~~~l~~~ 424 (900)
.+++.+++|....|.|||.+|+|..++ .+++..++++||+..--..+...
T Consensus 15 ~~~l~dqeNLi~~GLDSiR~M~L~~~wR~~G~~i~F~~La~~PTl~aW~qLl~~~ 69 (74)
T COG3433 15 VEELDDQENLIDYGLDSIRMMALLERWRKRGADIDFAQLAANPTLAAWWQLLSTR 69 (74)
T ss_pred hhhcCchhhHHHhchhHHHHHHHHHHHHHcCCcccHHHHHhCccHHHHHHHHHhc
Confidence 356888899999999999999998876 48888999999999877776654
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.17 Score=58.23 Aligned_cols=210 Identities=9% Similarity=0.120 Sum_probs=100.2
Q ss_pred eEEEEECCCCcEEEEEec--CCceeeceeEecCCCEEEE-EeeC------CEEEEEECCCCcEEEEEecC--Cce-eeee
Q 002615 568 KFICADAKRSSVLWEIKL--EGRIECSAAVLADFSQVVV-GCYK------GKIYFLDYLTGDIYWTFQTC--GEV-KCQP 635 (900)
Q Consensus 568 ~l~~~d~~tG~~~w~~~~--~~~~~~~~~~~~~~~~i~v-g~~d------g~l~~~d~~tG~~~w~~~~~--~~~-~~~~ 635 (900)
.+.+||+.+++ |..-. +.......+..-+ +.||+ |+.+ ..+++||+.+++ |..-.+ ... ....
T Consensus 273 ~v~~yd~~~~~--W~~l~~mp~~r~~~~~a~l~-~~IYviGG~~~~~~~~~~v~~Yd~~~n~--W~~~~~m~~~R~~~~~ 347 (557)
T PHA02713 273 CILVYNINTME--YSVISTIPNHIINYASAIVD-NEIIIAGGYNFNNPSLNKVYKINIENKI--HVELPPMIKNRCRFSL 347 (557)
T ss_pred CEEEEeCCCCe--EEECCCCCccccceEEEEEC-CEEEEEcCCCCCCCccceEEEEECCCCe--EeeCCCCcchhhceeE
Confidence 57899998876 76422 2211111222233 34554 4432 358899988763 753211 111 1112
Q ss_pred eEeCCCCEEEE-ecCCC-----eEEEEECCCCeEEEeecc--CCccccCceeeccCCEEEEE-eCC--------------
Q 002615 636 VVDAPRQLIWC-GSHDH-----NLYALDFRNYRCVYKLPC--GGSIFGSPAIDEVHDVLYVA-STS-------------- 692 (900)
Q Consensus 636 ~~~~~~~~i~~-gs~dg-----~l~~~d~~~g~~~w~~~~--~~~~~~~~~~~~~~~~l~v~-t~~-------------- 692 (900)
+.. ++.||+ |+.++ .+.+||+.+. .|..-. ........+..- ++.||+- +.+
T Consensus 348 ~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~--~W~~~~~mp~~r~~~~~~~~-~g~IYviGG~~~~~~~~~~~~~~~~ 422 (557)
T PHA02713 348 AVI--DDTIYAIGGQNGTNVERTIECYTMGDD--KWKMLPDMPIALSSYGMCVL-DQYIYIIGGRTEHIDYTSVHHMNSI 422 (557)
T ss_pred EEE--CCEEEEECCcCCCCCCceEEEEECCCC--eEEECCCCCcccccccEEEE-CCEEEEEeCCCcccccccccccccc
Confidence 222 356665 55443 4889998875 476532 111111111121 3777763 322
Q ss_pred ---------CcEEEEEcCCCCceeeeEeecCCcc-eeeeeeeeCCCEEEEE-eec------CcEEEEC-CCCCEEeeecC
Q 002615 693 ---------GRLTAISVKALPFHTLWLHELEVPA-FASLCITSANRHVICC-LVD------GHVVALD-SSGSIIWRCRT 754 (900)
Q Consensus 693 ---------g~l~~~~~~~~~g~~~w~~~~~~~~-~~s~~~~~~~~~i~~~-~~~------g~v~~~d-~~G~~~w~~~~ 754 (900)
..+.+||+.+ -.|+.-..-+. ........-++.||+. +.+ ..+.+|| .+ .-.|+.-.
T Consensus 423 ~~~~~~~~~~~ve~YDP~t----d~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~-~~~W~~~~ 497 (557)
T PHA02713 423 DMEEDTHSSNKVIRYDTVN----NIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNT-YNGWELIT 497 (557)
T ss_pred cccccccccceEEEECCCC----CeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCC-CCCeeEcc
Confidence 2477888775 36765332211 1122233345666654 332 2357888 44 11376432
Q ss_pred CCceeccccccccCCCeEEEE-eeCC--eEEEEeCCCCceeeE
Q 002615 755 GGPIFAGPCTSFALPSQVLIC-SRNG--SIYSFEQESGNLLWE 794 (900)
Q Consensus 755 ~~~~~~~~~~~~~~~~~l~~g-~~dg--~l~~~d~~tG~~~w~ 794 (900)
.-+.--..+-....++.||+. +.+| .+.+||+.+. .|+
T Consensus 498 ~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~--~W~ 538 (557)
T PHA02713 498 TTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTY--EWN 538 (557)
T ss_pred ccCcccccceeEEECCEEEEEeeecceeehhhcCcccc--ccc
Confidence 211100111112235666654 4565 6788888765 465
|
|
| >smart00564 PQQ beta-propeller repeat | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0049 Score=40.02 Aligned_cols=28 Identities=29% Similarity=0.827 Sum_probs=25.5
Q ss_pred CCCeEEEEeeCCeEEEEeCCCCceeeEE
Q 002615 768 LPSQVLICSRNGSIYSFEQESGNLLWEY 795 (900)
Q Consensus 768 ~~~~l~~g~~dg~l~~~d~~tG~~~w~~ 795 (900)
.++.+|+++.+|.++++|.++|+.+|++
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 3568999999999999999999999985
|
Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases. |
| >PRK05828 acyl carrier protein; Validated | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0098 Score=48.23 Aligned_cols=67 Identities=12% Similarity=0.151 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHhc-cc--CCcccccCCCccccCcchHHHHHHHHHh------CCCchhhhcCCCHHHHHHHHHhhc
Q 002615 359 SDLLQVIRKAFGH-AL--MVEEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 425 (900)
Q Consensus 359 ~~~~~~~~~~~~~-~l--~~~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~~t~~~l~~~l~~~~ 425 (900)
.++.+.++++.++ .+ ..+.+..+.+|.+||.|||..+.|...| +++-..+....|+..+..++....
T Consensus 4 ~eI~~~i~~ii~e~~~~~~~d~i~~~~~~~dLg~DSLd~velv~~lE~~f~I~i~~e~~~~i~Tv~d~~~~v~~~~ 79 (84)
T PRK05828 4 MEILLKIKEIAKKKNFAVTLDESNINKPYRELKIDSLDMFSIIVSLESEFNIEFSDEKLMKLKNLADLILEVKELK 79 (84)
T ss_pred HHHHHHHHHHHHHhccCCCcccccCCCCHHhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHHH
Confidence 5677888888886 33 4577888899999999999999987654 356667889999999999987654
|
|
| >PRK07081 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0079 Score=48.96 Aligned_cols=64 Identities=16% Similarity=0.281 Sum_probs=47.8
Q ss_pred HHHHHHHhccc--CC--cccccCCCccccCcchHHHHHHHHHh----C--CCchhhhc--CCCHHHHHHHHHhhcC
Q 002615 363 QVIRKAFGHAL--MV--EEVLHHDNFFTMGGNSIAAAHVAHNL----G--IDMRLIYN--FPTPSKLEIALLEKKG 426 (900)
Q Consensus 363 ~~~~~~~~~~l--~~--~~i~~~~~Ff~lGgdSl~a~~l~~~l----~--~~~~~~~~--~~t~~~l~~~l~~~~~ 426 (900)
+.++++..+.+ +. +.+..+.+|+++|-|||.+++|...| + ++...+.. ++|+..|+.++.....
T Consensus 3 ~~i~~ii~~~~~~~~~~~~i~~d~~l~dlGlDSl~~v~li~~lE~~f~I~i~~~~~~~~~~~tv~~l~~~V~~~~~ 78 (83)
T PRK07081 3 NTIRTILKKVAKLEVPIDSIADDADLYEAGLSSLATVQLMLAIEDAFDIEIPDEMLNRKLFASIDALAGAVTQLQD 78 (83)
T ss_pred HHHHHHHHHHHcCCCCHHhcCCCCCHhhcCCCHHHHHHHHHHHHHHhCCcCCHHHcCHHHhccHHHHHHHHHHHHh
Confidence 45566666653 22 46889999999999999999998755 3 55555543 8999999999987653
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.019 Score=64.40 Aligned_cols=103 Identities=12% Similarity=0.041 Sum_probs=74.3
Q ss_pred eeCCceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCcee
Q 002615 553 LKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK 632 (900)
Q Consensus 553 ~~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~ 632 (900)
+...+.+|+.|+.|-.+..|...|+.++-....+..-..-..+..++-.+.++++|..|.+|.+.+|.++-....+...+
T Consensus 198 fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgav 277 (1113)
T KOG0644|consen 198 FDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAV 277 (1113)
T ss_pred eccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccce
Confidence 34456789999999999999999998887766655434445565565567788889999999999998876555555444
Q ss_pred eeeeEeCCCCEEEEecCCCeEEEEECC
Q 002615 633 CQPVVDAPRQLIWCGSHDHNLYALDFR 659 (900)
Q Consensus 633 ~~~~~~~~~~~i~~gs~dg~l~~~d~~ 659 (900)
++..+.+-. ..+.||++..||..
T Consensus 278 taiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 278 TAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred eeeccCccc----cCCCCCceEecccc
Confidence 555555421 45678889888865
|
|
| >PRK07117 acyl carrier protein; Validated | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.012 Score=47.06 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHhccc-CC--cccccCCCccccCcchHHHHHHHHHh------CCCchhhhcCCCHHHHHHHHHhh
Q 002615 359 SDLLQVIRKAFGHAL-MV--EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 424 (900)
Q Consensus 359 ~~~~~~~~~~~~~~l-~~--~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~~t~~~l~~~l~~~ 424 (900)
+++.+.++++..+.+ ++ .+|..+.+|.+||.|||..+.+...+ +++-..+-+-.|+..+..++..+
T Consensus 4 ~ei~~~v~~ii~e~~p~i~~~~I~~~~~l~DLg~DSlD~veiv~~led~f~i~I~~~~~~~i~Tv~d~v~~i~~~ 78 (79)
T PRK07117 4 QRIFDILVRHIREVLPDLDQHQFQPEDSLVDLGANSMDRAEIVIMTLESLSLKIPLVEFAGAKNIGELADLLYAK 78 (79)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHCCCCCChhhcCCChHHHHHHHHHHHHHHCCccCHHHHHhcCCHHHHHHHHHHh
Confidence 467788999999998 46 46999999999999999999987643 46667788889999999988753
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.28 Score=56.57 Aligned_cols=131 Identities=14% Similarity=0.202 Sum_probs=63.3
Q ss_pred eEEEEECCCCeEEEeeccC--Ccc-ccCceeeccCCEEEE-EeCCC-----cEEEEEcCCCCceeeeEeecCCcce-eee
Q 002615 652 NLYALDFRNYRCVYKLPCG--GSI-FGSPAIDEVHDVLYV-ASTSG-----RLTAISVKALPFHTLWLHELEVPAF-ASL 721 (900)
Q Consensus 652 ~l~~~d~~~g~~~w~~~~~--~~~-~~~~~~~~~~~~l~v-~t~~g-----~l~~~~~~~~~g~~~w~~~~~~~~~-~s~ 721 (900)
.+++||+.+.+ |..-.. .+. ..+.+.. ++.||+ |+.++ .+.+||+.+ ..|+.-..-+.. ...
T Consensus 321 ~v~~Yd~~~n~--W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~----~~W~~~~~mp~~r~~~ 392 (557)
T PHA02713 321 KVYKINIENKI--HVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGD----DKWKMLPDMPIALSSY 392 (557)
T ss_pred eEEEEECCCCe--EeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCC----CeEEECCCCCcccccc
Confidence 48899988764 643221 111 1112222 367766 43332 377888775 368763332211 111
Q ss_pred eeeeCCCEEEE-Eeec-----------------------CcEEEEC-CCCCEEeeecCCCcee-ccccccccCCCeEEEE
Q 002615 722 CITSANRHVIC-CLVD-----------------------GHVVALD-SSGSIIWRCRTGGPIF-AGPCTSFALPSQVLIC 775 (900)
Q Consensus 722 ~~~~~~~~i~~-~~~~-----------------------g~v~~~d-~~G~~~w~~~~~~~~~-~~~~~~~~~~~~l~~g 775 (900)
.....++.+|+ |+.+ ..+.+|| .+. .|+.-..-+.. ..++ ....++.||+.
T Consensus 393 ~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td--~W~~v~~m~~~r~~~~-~~~~~~~IYv~ 469 (557)
T PHA02713 393 GMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN--IWETLPNFWTGTIRPG-VVSHKDDIYVV 469 (557)
T ss_pred cEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCC--eEeecCCCCcccccCc-EEEECCEEEEE
Confidence 22233566665 4332 2477788 443 47643221111 1111 12335677775
Q ss_pred e-eC------CeEEEEeCCC-CceeeEE
Q 002615 776 S-RN------GSIYSFEQES-GNLLWEY 795 (900)
Q Consensus 776 ~-~d------g~l~~~d~~t-G~~~w~~ 795 (900)
+ .+ ..+.+||+++ . .|+.
T Consensus 470 GG~~~~~~~~~~ve~Ydp~~~~--~W~~ 495 (557)
T PHA02713 470 CDIKDEKNVKTCIFRYNTNTYN--GWEL 495 (557)
T ss_pred eCCCCCCccceeEEEecCCCCC--CeeE
Confidence 3 22 2468899886 4 4764
|
|
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.27 Score=51.34 Aligned_cols=145 Identities=17% Similarity=0.140 Sum_probs=81.8
Q ss_pred CCeEEEEECCCCcEEEEEecCCce---------------------------eeceeEecCCCEEEEEeeCCEEEEEECCC
Q 002615 566 SHKFICADAKRSSVLWEIKLEGRI---------------------------ECSAAVLADFSQVVVGCYKGKIYFLDYLT 618 (900)
Q Consensus 566 ~g~l~~~d~~tG~~~w~~~~~~~~---------------------------~~~~~~~~~~~~i~vg~~dg~l~~~d~~t 618 (900)
++.++.+|..||+++|+...-+-+ ..++....+|++++..-.-..||++|..|
T Consensus 95 d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~t 174 (299)
T PF14269_consen 95 DDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPST 174 (299)
T ss_pred cceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEecccCEEEEEECCC
Confidence 456899999999999986532111 12333445566666666667899999999
Q ss_pred CcEEEEEecCCc---------eee--eeeEe---CCCCEEEEe-----------cCCCeEEEEECCCCeEEEeeccC---
Q 002615 619 GDIYWTFQTCGE---------VKC--QPVVD---APRQLIWCG-----------SHDHNLYALDFRNYRCVYKLPCG--- 670 (900)
Q Consensus 619 G~~~w~~~~~~~---------~~~--~~~~~---~~~~~i~~g-----------s~dg~l~~~d~~~g~~~w~~~~~--- 670 (900)
|+++|+...... ... -+-+. ++.+.|-+- ...+.++.+|..+.+..+.....
T Consensus 175 G~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~ 254 (299)
T PF14269_consen 175 GKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHP 254 (299)
T ss_pred CcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCC
Confidence 999998743300 000 01111 111222211 12356888888877655443321
Q ss_pred Ccc----ccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeec
Q 002615 671 GSI----FGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 713 (900)
Q Consensus 671 ~~~----~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 713 (900)
..+ ..+.-..++++.++-=+..|.+.-++.+ |+++|.+..
T Consensus 255 ~~~~s~~~G~~Q~L~nGn~li~~g~~g~~~E~~~~---G~vv~~~~f 298 (299)
T PF14269_consen 255 DGFYSPSQGSAQRLPNGNVLIGWGNNGRISEFTPD---GEVVWEAQF 298 (299)
T ss_pred CcccccCCCcceECCCCCEEEecCCCceEEEECCC---CCEEEEEEC
Confidence 111 2222333334444444556777777655 888988653
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.09 Score=54.61 Aligned_cols=160 Identities=15% Similarity=0.138 Sum_probs=93.8
Q ss_pred ceeEecCCCEEEEEeeCCEEEEEE-CCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEE-Eeecc
Q 002615 592 SAAVLADFSQVVVGCYKGKIYFLD-YLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCV-YKLPC 669 (900)
Q Consensus 592 ~~~~~~~~~~i~vg~~dg~l~~~d-~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~-w~~~~ 669 (900)
..++..++..+-+|..||.++.|+ +..-.++-....+.++... .+.+++..|..-+.| ...+|+..+|..+ |+...
T Consensus 149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL-~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDL-DFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred EEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccc-eeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 456777888999999999999999 4444444444455566543 456666565555556 7899999998544 33222
Q ss_pred CC-ccccCceeec--cCCEEEEEeC---CCcEEEEEcCCCCce--eeeEeec-CCcceeeeeeeeCCCEEEEEeecCcEE
Q 002615 670 GG-SIFGSPAIDE--VHDVLYVAST---SGRLTAISVKALPFH--TLWLHEL-EVPAFASLCITSANRHVICCLVDGHVV 740 (900)
Q Consensus 670 ~~-~~~~~~~~~~--~~~~l~v~t~---~g~l~~~~~~~~~g~--~~w~~~~-~~~~~~s~~~~~~~~~i~~~~~~g~v~ 740 (900)
+. ..++.+-+.. .+..+++++. .+.+..+++...++. ..|+... .....++..+..++..+.+|+.+|.|.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 22 2333333322 1235555553 344554443321110 1111111 123457788888899999999999999
Q ss_pred EEC-CCCCEEeeec
Q 002615 741 ALD-SSGSIIWRCR 753 (900)
Q Consensus 741 ~~d-~~G~~~w~~~ 753 (900)
.++ .+-+.+...+
T Consensus 307 i~~~~~lq~~~~vk 320 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVK 320 (398)
T ss_pred EEEeceeeeeEeeh
Confidence 999 5555544433
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.16 E-value=1.6 Score=43.78 Aligned_cols=199 Identities=14% Similarity=0.193 Sum_probs=105.7
Q ss_pred eeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeec----c-CCcc----ccCceeeccCCEEEEEeCCCcEEEEEcC
Q 002615 631 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLP----C-GGSI----FGSPAIDEVHDVLYVASTSGRLTAISVK 701 (900)
Q Consensus 631 ~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~----~-~~~~----~~~~~~~~~~~~l~v~t~~g~l~~~~~~ 701 (900)
......++..+..+.+++.|+++..||.++..-.|... + ++.+ ++.|-+ ++.+..++.|+++..|.-.
T Consensus 15 lihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEf---GqvvA~cS~Drtv~iWEE~ 91 (361)
T KOG2445|consen 15 LIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEF---GQVVATCSYDRTVSIWEEQ 91 (361)
T ss_pred eeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccc---cceEEEEecCCceeeeeec
Confidence 33444566677889999999999999976655445432 2 2333 333433 4677888999999999752
Q ss_pred CCC---ceeeeEeecC----Ccceeeeeeee--CCCEEEEEeecCcEEEEC-CC-CCE-EeeecCCCc---------eec
Q 002615 702 ALP---FHTLWLHELE----VPAFASLCITS--ANRHVICCLVDGHVVALD-SS-GSI-IWRCRTGGP---------IFA 760 (900)
Q Consensus 702 ~~~---g~~~w~~~~~----~~~~~s~~~~~--~~~~i~~~~~~g~v~~~d-~~-G~~-~w~~~~~~~---------~~~ 760 (900)
..+ -...|..... ........+.+ -+=.+.+++.||.+..|+ .+ ..+ .|++...-. ...
T Consensus 92 ~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~ 171 (361)
T KOG2445|consen 92 EKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQP 171 (361)
T ss_pred ccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCc
Confidence 111 1235643221 11112222222 234567778899999998 32 222 376542211 111
Q ss_pred ccccc----ccCCCeEEEEeeC-----CeEEEEeCCCCceeeEE-----ecCCceecccccccccccccccccCCCeEEE
Q 002615 761 GPCTS----FALPSQVLICSRN-----GSIYSFEQESGNLLWEY-----SVGDPITASAYIDEHLQLKLESCLSIDRLVC 826 (900)
Q Consensus 761 ~~~~~----~~~~~~l~~g~~d-----g~l~~~d~~tG~~~w~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 826 (900)
..|+. -.....|.+|+.+ +.++.|....+.-+|.. ....++....+... ....-..++
T Consensus 172 ~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn--------~Gr~y~~lA 243 (361)
T KOG2445|consen 172 CFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN--------IGRSYHLLA 243 (361)
T ss_pred ceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc--------cCCceeeEE
Confidence 11222 1123456666654 24555544444444532 12223322222111 122256889
Q ss_pred EEcCCCcEEEEEeec
Q 002615 827 ICTSSGSIHILRVNL 841 (900)
Q Consensus 827 ~g~~~G~v~~~d~~~ 841 (900)
+++.|| |++|+...
T Consensus 244 vA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKV 257 (361)
T ss_pred EeecCc-EEEEEEee
Confidence 999999 99999874
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.091 Score=51.98 Aligned_cols=109 Identities=12% Similarity=0.107 Sum_probs=66.1
Q ss_pred eEecCCCEEEEEeeCCEEEEEECCCCcEEE--EEecCC-ceeeeeeEeCCCCEEEEecCCCeEEEEECC-CCeEEEee-c
Q 002615 594 AVLADFSQVVVGCYKGKIYFLDYLTGDIYW--TFQTCG-EVKCQPVVDAPRQLIWCGSHDHNLYALDFR-NYRCVYKL-P 668 (900)
Q Consensus 594 ~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w--~~~~~~-~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~-~g~~~w~~-~ 668 (900)
-++..+..++++-.+|.+-..+...+.+.. ..+.++ +......-..+.+.+|.|+.|+.+.+||.+ .++.+|.- +
T Consensus 128 D~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~k 207 (339)
T KOG0280|consen 128 DISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSK 207 (339)
T ss_pred EeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecce
Confidence 344555678888888877766644443322 111222 222222222345789999999999999998 67888872 2
Q ss_pred cC-CccccCceeeccCCEEEEEeCCCcEEEEEcCC
Q 002615 669 CG-GSIFGSPAIDEVHDVLYVASTSGRLTAISVKA 702 (900)
Q Consensus 669 ~~-~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~ 702 (900)
.+ ..+.+.-...+.+..|+.|+.+-.+..||.++
T Consensus 208 vH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 208 VHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred eeecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence 22 12222111122346899999999999999774
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.27 Score=46.39 Aligned_cols=152 Identities=13% Similarity=0.066 Sum_probs=93.7
Q ss_pred ceEEEEecC---CCeEEEEECCCCcEEEEEecC-CceeeceeEecCCCEEEEEee-CCEEEEEECCCCcEEEEEecCCce
Q 002615 557 DIYLFVGSH---SHKFICADAKRSSVLWEIKLE-GRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTCGEV 631 (900)
Q Consensus 557 ~~~v~igs~---~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~i~vg~~-dg~l~~~d~~tG~~~w~~~~~~~~ 631 (900)
++.++.++. ...|+.+|+.+|++.|+.++. +.+. .--+..-++.+|.-++ +|.-+.+|+.|-+.+-++...++-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~F-gEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVF-GEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCcccc-ccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence 446666553 246999999999999998877 3332 2233344567888886 567789999998888777766654
Q ss_pred eeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeecc--CC-ccccCceeeccCCEEEEEeC-CCcEEEEEcCCCCcee
Q 002615 632 KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC--GG-SIFGSPAIDEVHDVLYVAST-SGRLTAISVKALPFHT 707 (900)
Q Consensus 632 ~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~--~~-~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~ 707 (900)
... .. ++..++.++....++.-|+++-...-+... .| ++..-.-+.-.++.+|..-+ ...+.++++++ |++
T Consensus 134 WgL--t~-d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~s--GrV 208 (262)
T COG3823 134 WGL--TS-DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDS--GRV 208 (262)
T ss_pred eee--ec-CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCC--CcE
Confidence 432 22 345688877777888889887544433322 12 11111111112355655433 34578888887 887
Q ss_pred eeEeecC
Q 002615 708 LWLHELE 714 (900)
Q Consensus 708 ~w~~~~~ 714 (900)
+--++..
T Consensus 209 ~~widlS 215 (262)
T COG3823 209 VAWIDLS 215 (262)
T ss_pred EEEEEcc
Confidence 6555544
|
|
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.13 Score=58.76 Aligned_cols=43 Identities=19% Similarity=0.446 Sum_probs=38.5
Q ss_pred EecCceEEEcc----CCcEEEEcccCCcEEECceeeChHHHHHHHhC
Q 002615 220 FRTGDFARRIQ----SGDLVFLGRKDRTIKINGQRMALEEIEHTLRG 262 (900)
Q Consensus 220 ~~TGDl~~~~~----~G~l~~~GR~dd~ik~~G~rv~~~~iE~~l~~ 262 (900)
|+.||.+++.. .-.|.|+||.+.++.+.|+++.-.+++.++.+
T Consensus 410 Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~~ 456 (597)
T PLN02249 410 YRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVEN 456 (597)
T ss_pred eecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHHH
Confidence 89999999753 24699999999999999999999999998876
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.061 Score=58.44 Aligned_cols=105 Identities=13% Similarity=0.085 Sum_probs=72.6
Q ss_pred CCCEEEEEeeCCEEEEEECCCCcE-------EEEEecCCceeeeeeEeC-CCCEEEEecCCCeEEEEECCCCeEEEeecc
Q 002615 598 DFSQVVVGCYKGKIYFLDYLTGDI-------YWTFQTCGEVKCQPVVDA-PRQLIWCGSHDHNLYALDFRNYRCVYKLPC 669 (900)
Q Consensus 598 ~~~~i~vg~~dg~l~~~d~~tG~~-------~w~~~~~~~~~~~~~~~~-~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~ 669 (900)
|...+.|+|.||.|..|....+-. .-....+....++.-+.+ ..+.+.++++|-+|..||..+++..-++..
T Consensus 639 D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~g 718 (1012)
T KOG1445|consen 639 DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVG 718 (1012)
T ss_pred ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheecc
Confidence 345799999999998887665432 122333444444444443 235677889999999999999987777665
Q ss_pred CCccccCceeeccCCEEEEEeCCCcEEEEEcCC
Q 002615 670 GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKA 702 (900)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~ 702 (900)
+..-+-..+.++++..+.....||.+..|++..
T Consensus 719 HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 719 HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred CcCceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence 544444455555567777778899999999886
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.073 Score=53.74 Aligned_cols=146 Identities=14% Similarity=0.199 Sum_probs=92.1
Q ss_pred CCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCC-----eEEEeeccCCccccCceeecc
Q 002615 608 KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY-----RCVYKLPCGGSIFGSPAIDEV 682 (900)
Q Consensus 608 dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g-----~~~w~~~~~~~~~~~~~~~~~ 682 (900)
+..+-..|.+||... .|...+.+.+. -+...++.++.|+.+|.|+.+|+..+ .+..++..+..+.+--.+.-.
T Consensus 233 sqqv~L~nvetg~~q-sf~sksDVfAl-Qf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s 310 (425)
T KOG2695|consen 233 SQQVLLTNVETGHQQ-SFQSKSDVFAL-QFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFS 310 (425)
T ss_pred cceeEEEEeeccccc-ccccchhHHHH-HhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccc
Confidence 444667788888654 24444444332 23334688999999999999999764 333344445555554444434
Q ss_pred CCEEEEEeCCCcEEEEEcCCC-CceeeeEeecCCccee--eeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCC
Q 002615 683 HDVLYVASTSGRLTAISVKAL-PFHTLWLHELEVPAFA--SLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG 755 (900)
Q Consensus 683 ~~~l~v~t~~g~l~~~~~~~~-~g~~~w~~~~~~~~~~--s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~ 755 (900)
+..|.+...+|.|..||.... .++-+-++..+.+... -..+...++.|+.++.|-....|. .+|.++-+.+..
T Consensus 311 ~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 311 QQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred cceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 678888889999999998741 1222556655544321 223445678888888887777777 777777655433
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.08 E-value=2.2 Score=44.61 Aligned_cols=117 Identities=14% Similarity=0.086 Sum_probs=74.1
Q ss_pred ccceEEeeCCceEEEEecCCCeEEEEECC--------C----CcEEEEEec----CCceeeceeEecCCCEEEEEeeCCE
Q 002615 547 ASPLVVLKDSDIYLFVGSHSHKFICADAK--------R----SSVLWEIKL----EGRIECSAAVLADFSQVVVGCYKGK 610 (900)
Q Consensus 547 ~sp~v~~~~~~~~v~igs~~g~l~~~d~~--------t----G~~~w~~~~----~~~~~~~~~~~~~~~~i~vg~~dg~ 610 (900)
+--++.+...++.+..|+.+|.+.+|-.. + .++.|...- +..-..-.+.++++..+.+|+.|..
T Consensus 67 aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns 146 (434)
T KOG1009|consen 67 AVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNS 146 (434)
T ss_pred eeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccce
Confidence 33344455566677888888888888654 2 134465321 1111123567788889999999999
Q ss_pred EEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeE
Q 002615 611 IYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRC 663 (900)
Q Consensus 611 l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~ 663 (900)
++.||...|...-...-+.......++++-+..|..-+.|...+.+++...+.
T Consensus 147 ~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~ 199 (434)
T KOG1009|consen 147 VRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQV 199 (434)
T ss_pred EEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeee
Confidence 99999999998876665555544445555555555555565566555544333
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.05 E-value=1.1 Score=48.00 Aligned_cols=219 Identities=15% Similarity=0.172 Sum_probs=111.8
Q ss_pred EEEEEECCCCcEEEEEecCC--ceeeeeeE--eC----CCCEEEEecC---------C-CeEEEEECCCC-------eEE
Q 002615 610 KIYFLDYLTGDIYWTFQTCG--EVKCQPVV--DA----PRQLIWCGSH---------D-HNLYALDFRNY-------RCV 664 (900)
Q Consensus 610 ~l~~~d~~tG~~~w~~~~~~--~~~~~~~~--~~----~~~~i~~gs~---------d-g~l~~~d~~~g-------~~~ 664 (900)
.|..+|+.+.+.+-++.... .+.+...+ .. ....|++|+. . |.++.|+..+. +.+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 46677777777766555432 22222122 11 1456777643 2 88999998874 233
Q ss_pred EeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCce-eeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC
Q 002615 665 YKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFH-TLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD 743 (900)
Q Consensus 665 w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~-~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d 743 (900)
......+++.+-..+ ++.++++. ++.++.|+.+. .+ ..-.-....+. ....+...++.+++|....++..+.
T Consensus 83 ~~~~~~g~V~ai~~~---~~~lv~~~-g~~l~v~~l~~--~~~l~~~~~~~~~~-~i~sl~~~~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF---NGRLVVAV-GNKLYVYDLDN--SKTLLKKAFYDSPF-YITSLSVFKNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEESS-EEEEEEE---TTEEEEEE-TTEEEEEEEET--TSSEEEEEEE-BSS-SEEEEEEETTEEEEEESSSSEEEEE
T ss_pred EEEeecCcceEhhhh---CCEEEEee-cCEEEEEEccC--cccchhhheecceE-EEEEEeccccEEEEEEcccCEEEEE
Confidence 445556666554444 36766555 67799999887 33 22222222222 2333444577999998877777664
Q ss_pred --CCCC-EEeeecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCC-------C--cee--eEEecCCceecc---cc
Q 002615 744 --SSGS-IIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQES-------G--NLL--WEYSVGDPITAS---AY 806 (900)
Q Consensus 744 --~~G~-~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~t-------G--~~~--w~~~~~~~~~~~---~~ 806 (900)
..+. ...-.....+.....+.....++.++++..+|.++.+.... + ++. -.+.++..+... ..
T Consensus 156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l 235 (321)
T PF03178_consen 156 YDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSL 235 (321)
T ss_dssp EETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--S
T ss_pred EEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEe
Confidence 4343 33222222232222222221224888888899888776431 2 232 345555554433 11
Q ss_pred cccccccccccccCCCeEEEEEcCCCcEEEEEe
Q 002615 807 IDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 839 (900)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~ 839 (900)
... ...........++.++.+|.|.++-+
T Consensus 236 ~~~----~~~~~~~~~~~i~~~T~~G~Ig~l~p 264 (321)
T PF03178_consen 236 IPR----SGSSESPNRPQILYGTVDGSIGVLIP 264 (321)
T ss_dssp S------SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred eec----CCCCcccccceEEEEecCCEEEEEEe
Confidence 100 00000111356888899999987655
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.26 Score=48.05 Aligned_cols=113 Identities=12% Similarity=0.097 Sum_probs=63.1
Q ss_pred CCCeEEEEeeCCeEEEEeCCCCcee-eEEecCC-ceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecC---
Q 002615 768 LPSQVLICSRNGSIYSFEQESGNLL-WEYSVGD-PITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD--- 842 (900)
Q Consensus 768 ~~~~l~~g~~dg~l~~~d~~tG~~~-w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~--- 842 (900)
..+.+.+|+.+|.+-.||..+..-. -.+..+. .+.-.-|.. .....++++++||.+|-||.++.
T Consensus 191 qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHp-----------k~p~~Lft~sedGslw~wdas~~~l~ 259 (319)
T KOG4714|consen 191 QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHP-----------KNPEHLFTCSEDGSLWHWDASTTFLS 259 (319)
T ss_pred cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccC-----------CCchheeEecCCCcEEEEcCCCceEE
Confidence 3567888999999999998765211 0111111 111111111 12678999999999999998742
Q ss_pred ----cccccccccccceee-eeeec-cCCc--cccCceeeCCEEEEeeeCCeEEEEE
Q 002615 843 ----VTGKENQSKDHMVQE-FAKLE-LQGD--IFSSPVMIGGRVFVGCRDDYIYCIA 891 (900)
Q Consensus 843 ----~~~~~~~~~~~~~~~-~~~~~-l~~~--~~ss~~~~~~~l~vg~~dg~l~~ld 891 (900)
.+...-|...+..+- +.... ++.. .+++.-+.+..|+-|+.-+.+|.++
T Consensus 260 i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 260 ISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 222233433333222 11111 1111 2334445678888898888888764
|
|
| >PRK05350 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.02 Score=46.65 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHhcccCC--cccccCCCc-cccCcchHHHHHHHHHh------CCCchhhhcCCCHHHHHHHHHhhc
Q 002615 359 SDLLQVIRKAFGHALMV--EEVLHHDNF-FTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 425 (900)
Q Consensus 359 ~~~~~~~~~~~~~~l~~--~~i~~~~~F-f~lGgdSl~a~~l~~~l------~~~~~~~~~~~t~~~l~~~l~~~~ 425 (900)
+++.+.++++.++.+++ ..+..+.+| -++|-|||..+.|...| .++...+...+|+..++.++..+.
T Consensus 5 ~~i~~~v~~ii~~~~~~~~~~i~~d~~l~~dlg~DSld~veli~~lE~~fgI~i~~~~~~~~~Tv~dlv~~v~~~~ 80 (82)
T PRK05350 5 EEILERLRAILVELFEIDPEDITPEANLYEDLDLDSIDAVDLVVHLQKLTGKKIKPEEFKSVRTVQDVVDAVERLL 80 (82)
T ss_pred HHHHHHHHHHHHHHhCCCHHHCCCCccchhhcCCCHHHHHHHHHHHHHHHCCccCHHHHhhcCcHHHHHHHHHHHh
Confidence 46778888888888876 468888885 78999999999987654 367778999999999999998654
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.15 Score=53.07 Aligned_cols=148 Identities=10% Similarity=0.010 Sum_probs=86.4
Q ss_pred eeCCceEEEEecCCCeEEEEE-CCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEE-EEEecCC-
Q 002615 553 LKDSDIYLFVGSHSHKFICAD-AKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIY-WTFQTCG- 629 (900)
Q Consensus 553 ~~~~~~~v~igs~~g~l~~~d-~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~-w~~~~~~- 629 (900)
+..++..+-+|..||.++.|+ +..-.++-+...+..+. ...+++|+..+..-+.| ....|+..+|..+ |..+...
T Consensus 152 f~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~-DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~ 229 (398)
T KOG0771|consen 152 FNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVK-DLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKD 229 (398)
T ss_pred EcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccc-cceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccc
Confidence 344567888999999999999 65545544444455543 57889998777666666 6899999999443 2211111
Q ss_pred ceeeeeeEeC--CCCEEEEecC---CCeEEEEECCC--C--eEEEeecc-CCccccCceeeccCCEEEEEeCCCcEEEEE
Q 002615 630 EVKCQPVVDA--PRQLIWCGSH---DHNLYALDFRN--Y--RCVYKLPC-GGSIFGSPAIDEVHDVLYVASTSGRLTAIS 699 (900)
Q Consensus 630 ~~~~~~~~~~--~~~~i~~gs~---dg~l~~~d~~~--g--~~~w~~~~-~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~ 699 (900)
......-+.. ....+++.+. .+.+..+|... + -..|+... .....++..++.++..+.+||.+|.+..++
T Consensus 230 ~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~ 309 (398)
T KOG0771|consen 230 EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYD 309 (398)
T ss_pred hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEE
Confidence 1112222221 1123333321 23344433211 0 01111111 233567778888788899999999999999
Q ss_pred cCC
Q 002615 700 VKA 702 (900)
Q Consensus 700 ~~~ 702 (900)
..+
T Consensus 310 ~~~ 312 (398)
T KOG0771|consen 310 AKS 312 (398)
T ss_pred ece
Confidence 776
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=95.91 E-value=2.6 Score=43.79 Aligned_cols=146 Identities=19% Similarity=0.151 Sum_probs=70.5
Q ss_pred ecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEee--------
Q 002615 596 LADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKL-------- 667 (900)
Q Consensus 596 ~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~-------- 667 (900)
...++.+++|+.+| ||.++..+....-+......+... .+.+.-+.+++-+ |+.|++++..+-...-..
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql-~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQL-SVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEE-EEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 34567899998887 999997222221111111123333 3333445555544 588999987654332210
Q ss_pred -----ccC---C-ccccCceeeccCCEEEEEeCCCcEEEEEcCCC--Cc-eeeeEeecCCcceeeeeeeeCCCEEEEEee
Q 002615 668 -----PCG---G-SIFGSPAIDEVHDVLYVASTSGRLTAISVKAL--PF-HTLWLHELEVPAFASLCITSANRHVICCLV 735 (900)
Q Consensus 668 -----~~~---~-~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~--~g-~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~ 735 (900)
... + ..+...........+.++. ...+..|..... .. +.+-+....... .+..+. ++.+++|..
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~-~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPP-SSIAFL--GNKICVGTS 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCc-EEEEEe--CCEEEEEeC
Confidence 111 1 1111000111122344444 345666655431 12 334444444322 222332 677888864
Q ss_pred cCcEEEEC-CCCCEE
Q 002615 736 DGHVVALD-SSGSII 749 (900)
Q Consensus 736 ~g~v~~~d-~~G~~~ 749 (900)
.....+| .++...
T Consensus 157 -~~f~~idl~~~~~~ 170 (275)
T PF00780_consen 157 -KGFYLIDLNTGSPS 170 (275)
T ss_pred -CceEEEecCCCCce
Confidence 4577888 666654
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG2103 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.17 Score=57.29 Aligned_cols=122 Identities=15% Similarity=0.174 Sum_probs=75.0
Q ss_pred CcEEEEEecCCce-eeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceee--eeeEeCCCCEEEEecCCCeE
Q 002615 577 SSVLWEIKLEGRI-ECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC--QPVVDAPRQLIWCGSHDHNL 653 (900)
Q Consensus 577 G~~~w~~~~~~~~-~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~--~~~~~~~~~~i~~gs~dg~l 653 (900)
|++.|+..+-+.. .....+.....+++|.++.|-|-.+|..||++.|+.-.+..... .++. -++......+
T Consensus 24 gkfdwr~~~vG~~k~~~~~~~t~~~rlivsT~~~vlAsL~~~tGei~WRqvl~~~~~~~~~~~~------~~iS~dg~~l 97 (910)
T KOG2103|consen 24 GKFDWRQQLVGVKKVNFLVYDTKSKRLIVSTEKGVLASLNLRTGEIIWRQVLEPKTSGLGVPLT------NTISVDGRYL 97 (910)
T ss_pred hhcchhhhcccceeEEEEeecCCCceEEEEeccchhheecccCCcEEEEEeccCCCcccCccee------EEEccCCcEE
Confidence 6677776554422 12334555567899999999999999999999998655432221 1111 1344444579
Q ss_pred EEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecC
Q 002615 654 YALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE 714 (900)
Q Consensus 654 ~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~ 714 (900)
+.||.++|...|+...... +....+....+..++ +| +..+. |+..|.....
T Consensus 98 r~wn~~~g~l~~~i~l~~g-~~~~~~~v~~~i~v~---~g----~~~~~--g~l~w~~~~~ 148 (910)
T KOG2103|consen 98 RSWNTNNGILDWEIELADG-FKGLLLEVNKGIAVL---NG----HTRKF--GELKWVESFS 148 (910)
T ss_pred EeecCCCceeeeecccccc-cceeEEEEccceEEE---cc----eeccc--cceeehhhcc
Confidence 9999999999999887655 333333322232222 22 33344 7888876544
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.62 Score=47.87 Aligned_cols=156 Identities=12% Similarity=0.090 Sum_probs=94.5
Q ss_pred ccccccceEEeeCCceEEEEecCCCeEEEEECCC------CcEEEEEecCC-ceeeceeEecCCCEEEEEeeCCEEEEEE
Q 002615 543 SCVDASPLVVLKDSDIYLFVGSHSHKFICADAKR------SSVLWEIKLEG-RIECSAAVLADFSQVVVGCYKGKIYFLD 615 (900)
Q Consensus 543 ~~v~~sp~v~~~~~~~~v~igs~~g~l~~~d~~t------G~~~w~~~~~~-~~~~~~~~~~~~~~i~vg~~dg~l~~~d 615 (900)
+||.| +-++..+..+..|..+-.+..|+... -+++-....+. ....+..+...+.++|.|..+|.+..-|
T Consensus 57 GCiNA---lqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD 133 (609)
T KOG4227|consen 57 GCINA---LQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD 133 (609)
T ss_pred cccce---eeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence 45553 33445577888888888888887642 12221111111 1223556666667899999999999999
Q ss_pred CCCCcEEEEEecCC---ceeeeeeEeCCCCEEEEecCCCeEEEEECCCC----eEEEeeccCCccccCceeeccCCEEEE
Q 002615 616 YLTGDIYWTFQTCG---EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY----RCVYKLPCGGSIFGSPAIDEVHDVLYV 688 (900)
Q Consensus 616 ~~tG~~~w~~~~~~---~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g----~~~w~~~~~~~~~~~~~~~~~~~~l~v 688 (900)
.++.+.+..+.... .+.. .-..+.++.+.+.+.++.+..||.... .++.-...+....+...-......|.+
T Consensus 134 iEt~qsi~V~~~~~~~~~VY~-m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~ 212 (609)
T KOG4227|consen 134 IETKQSIYVANENNNRGDVYH-MDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILV 212 (609)
T ss_pred cccceeeeeecccCcccceee-cccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEe
Confidence 99998887765443 3332 223344677888888999999997653 233322323333332222222355677
Q ss_pred EeCCCcEEEEEcCC
Q 002615 689 ASTSGRLTAISVKA 702 (900)
Q Consensus 689 ~t~~g~l~~~~~~~ 702 (900)
++..+++-.||...
T Consensus 213 ~~~~~G~~~~D~R~ 226 (609)
T KOG4227|consen 213 NSETGGPNVFDRRM 226 (609)
T ss_pred ccccCCCCceeecc
Confidence 77777788888653
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.86 E-value=1.4 Score=44.14 Aligned_cols=120 Identities=11% Similarity=-0.014 Sum_probs=69.8
Q ss_pred eceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEec----CCceeeeeeE-eC-CCCEEEEecCCCeEEEEECC-----
Q 002615 591 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT----CGEVKCQPVV-DA-PRQLIWCGSHDHNLYALDFR----- 659 (900)
Q Consensus 591 ~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~----~~~~~~~~~~-~~-~~~~i~~gs~dg~l~~~d~~----- 659 (900)
..+.+...|.++..++.|+.+..||..++.-.|.... ++......+. .+ -+..|.+.++|+++..|.-.
T Consensus 17 hdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~ 96 (361)
T KOG2445|consen 17 HDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEE 96 (361)
T ss_pred eeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccc
Confidence 3556667778899999999999999776666665432 2222222222 12 25667788999999999642
Q ss_pred CCeEEEeecc-----CCccccCceeecc--CCEEEEEeCCCcEEEEEcCCCCceeeeEe
Q 002615 660 NYRCVYKLPC-----GGSIFGSPAIDEV--HDVLYVASTSGRLTAISVKALPFHTLWLH 711 (900)
Q Consensus 660 ~g~~~w~~~~-----~~~~~~~~~~~~~--~~~l~v~t~~g~l~~~~~~~~~g~~~w~~ 711 (900)
.....|.... .+.+. ...+.+. +=.+..++.+|.|..|+.-+.-.-..|+.
T Consensus 97 ~~~~~Wv~~ttl~DsrssV~-DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L 154 (361)
T KOG2445|consen 97 AHGRRWVRRTTLVDSRSSVT-DVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL 154 (361)
T ss_pred cccceeEEEEEeecCCccee-EEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence 1223565332 11111 1111111 23466677899999998654222345654
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.79 E-value=5.6 Score=46.71 Aligned_cols=70 Identities=19% Similarity=0.182 Sum_probs=44.7
Q ss_pred eeeceeEecCCCEEEEEeeCCEEEEEECC-CCcEEEEEe-----cCCceeeeeeEeCCCCEEEEecCCC--eEEEEEC
Q 002615 589 IECSAAVLADFSQVVVGCYKGKIYFLDYL-TGDIYWTFQ-----TCGEVKCQPVVDAPRQLIWCGSHDH--NLYALDF 658 (900)
Q Consensus 589 ~~~~~~~~~~~~~i~vg~~dg~l~~~d~~-tG~~~w~~~-----~~~~~~~~~~~~~~~~~i~~gs~dg--~l~~~d~ 658 (900)
+.+.+.+..++....++..+|.||.+-.. +|+..|... .+.....+.+..-+++.+|+||..| .+..++.
T Consensus 259 ~~~~~~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng~lFvGS~~gdSqLi~L~~ 336 (1096)
T KOG1897|consen 259 IVCYGRVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNGVLFVGSRFGDSQLIKLNT 336 (1096)
T ss_pred EEEcccccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCceEEEeccCCceeeEEccc
Confidence 44555666777777789999999988776 888887632 1222222222233579999998755 4555543
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.79 E-value=1.4 Score=49.88 Aligned_cols=184 Identities=14% Similarity=0.107 Sum_probs=96.7
Q ss_pred ceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEe--cC--CCEEEEEeeCCEEEEEECCCCcEEEEEecCCcee
Q 002615 557 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVL--AD--FSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK 632 (900)
Q Consensus 557 ~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~--~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~ 632 (900)
.-.+.++...|.|..+|...+..+-.+..+.......+.. .+ ...+.+-.....|..||..||+..|++.....+.
T Consensus 79 ~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iL 158 (1062)
T KOG1912|consen 79 QLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEIL 158 (1062)
T ss_pred ceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcce
Confidence 4456777788999999988876653333322111122221 11 1345555566789999999999999998877776
Q ss_pred eeeeEeCC--CCEEEEecCCCeEEEEECC-------CCeEEEeecc-------------CCccccCc------------e
Q 002615 633 CQPVVDAP--RQLIWCGSHDHNLYALDFR-------NYRCVYKLPC-------------GGSIFGSP------------A 678 (900)
Q Consensus 633 ~~~~~~~~--~~~i~~gs~dg~l~~~d~~-------~g~~~w~~~~-------------~~~~~~~~------------~ 678 (900)
++-.+++- ...++.|+ .|.+...+.- .|+......- +....+.| +
T Consensus 159 s~f~~DPfd~rh~~~l~s-~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~fa 237 (1062)
T KOG1912|consen 159 SCFRVDPFDSRHFCVLGS-KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFA 237 (1062)
T ss_pred eeeeeCCCCcceEEEEcc-CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhh
Confidence 65455442 23333343 3444443321 1222221111 01111111 1
Q ss_pred eeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCC--cceeeeeeeeCCCEEEEEeecCcEEEEC
Q 002615 679 IDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV--PAFASLCITSANRHVICCLVDGHVVALD 743 (900)
Q Consensus 679 ~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~--~~~~s~~~~~~~~~i~~~~~~g~v~~~d 743 (900)
+.+.-..+.+.+....++.+|++- -..+-...... ..|....+....+.+|+.-.||.+..+-
T Consensus 238 f~p~~rn~lfi~~prellv~dle~--~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 238 FSPHWRNILFITFPRELLVFDLEY--ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred cChhhhceEEEEeccceEEEcchh--hceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence 122223444556666799999774 33444433322 2234444455556677777777665543
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=95.73 E-value=2.9 Score=42.98 Aligned_cols=224 Identities=13% Similarity=0.066 Sum_probs=120.0
Q ss_pred ceEEEEecCCC-eEEEEECCCCcEEEEEecC-Cc-eeeceeEecCCCEEEEEee-----CCEEEEEECCC-CcEEEEEec
Q 002615 557 DIYLFVGSHSH-KFICADAKRSSVLWEIKLE-GR-IECSAAVLADFSQVVVGCY-----KGKIYFLDYLT-GDIYWTFQT 627 (900)
Q Consensus 557 ~~~v~igs~~g-~l~~~d~~tG~~~w~~~~~-~~-~~~~~~~~~~~~~i~vg~~-----dg~l~~~d~~t-G~~~w~~~~ 627 (900)
...|.++-.-| .++.||..+|+..-....+ ++ .+.-.++++||.++|+.-. .|.|-+||... -+.+-.+.+
T Consensus 17 ~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s 96 (305)
T PF07433_consen 17 PEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPS 96 (305)
T ss_pred CeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecC
Confidence 44566666544 5778999999987544433 33 3456789999999998643 47888999873 344444555
Q ss_pred CCceeeeeeEeCCCCEEEEe------------------cCCCeEEEEECCCCeEEEeeccC----CccccCceeeccCCE
Q 002615 628 CGEVKCQPVVDAPRQLIWCG------------------SHDHNLYALDFRNYRCVYKLPCG----GSIFGSPAIDEVHDV 685 (900)
Q Consensus 628 ~~~~~~~~~~~~~~~~i~~g------------------s~dg~l~~~d~~~g~~~w~~~~~----~~~~~~~~~~~~~~~ 685 (900)
++--.-...+.+++..|+++ +.+-.|..+|..+|+++-+..+. ....-...+.. .+.
T Consensus 97 ~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G~ 175 (305)
T PF07433_consen 97 HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DGT 175 (305)
T ss_pred CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecC-CCc
Confidence 44222223344444455554 23446788889999887665552 22223334444 355
Q ss_pred EEEEeC-CC-------cEEEEEcCCCCceeeeEeecCC-------cceeeeeeeeCCCEEEEEee-cCcEEEEC-CCCCE
Q 002615 686 LYVAST-SG-------RLTAISVKALPFHTLWLHELEV-------PAFASLCITSANRHVICCLV-DGHVVALD-SSGSI 748 (900)
Q Consensus 686 l~v~t~-~g-------~l~~~~~~~~~g~~~w~~~~~~-------~~~~s~~~~~~~~~i~~~~~-~g~v~~~d-~~G~~ 748 (900)
++++.. .| .+..++. |+.+-...... ....+.++..+++.+.+.+. .+.+..|| .+|+.
T Consensus 176 V~~a~Q~qg~~~~~~PLva~~~~----g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~ 251 (305)
T PF07433_consen 176 VAFAMQYQGDPGDAPPLVALHRR----GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRL 251 (305)
T ss_pred EEEEEecCCCCCccCCeEEEEcC----CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCE
Confidence 665542 11 1111111 11111111111 12255666666666666654 45677787 88887
Q ss_pred EeeecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCc
Q 002615 749 IWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGN 790 (900)
Q Consensus 749 ~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~ 790 (900)
+-.....+.. .+....++ .++.+..|.+...+....+
T Consensus 252 ~~~~~l~D~c----Gva~~~~~-f~~ssG~G~~~~~~~~~~~ 288 (305)
T PF07433_consen 252 LGSVPLPDAC----GVAPTDDG-FLVSSGQGQLIRLSPDGPQ 288 (305)
T ss_pred eeccccCcee----eeeecCCc-eEEeCCCccEEEccCcccc
Confidence 6544432211 01112223 5555556666666544433
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.52 Score=54.92 Aligned_cols=182 Identities=11% Similarity=0.027 Sum_probs=110.3
Q ss_pred CceEEEEecCCCeEEEEECCCCcEEEEEecCCce--eeceeEecCCC--EEEEEeeCCEEEEEECCCCcEEEEEecCCce
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRI--ECSAAVLADFS--QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV 631 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~--~~~~~~~~~~~--~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~ 631 (900)
++.++++++.+..+..+|.+.+.+.-+.....+. .++..+-.... +++.|+.-|.|+.|++.--+.--....+...
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~ 177 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGS 177 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCc
Confidence 5677888888888999999988877666555542 22223322223 4666777888999987621111123334444
Q ss_pred eeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeecc--CCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeee
Q 002615 632 KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC--GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLW 709 (900)
Q Consensus 632 ~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~--~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w 709 (900)
.-.+.+..++.++.+.|.|..+..|++++++..-..-. ...++. .++.+ ..++.++.+-.+..|+-+ ++++-
T Consensus 178 iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~-~~~~~--n~i~t~gedctcrvW~~~---~~~l~ 251 (967)
T KOG0974|consen 178 IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA-CCFLP--NRIITVGEDCTCRVWGVN---GTQLE 251 (967)
T ss_pred eEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEE-EEecc--ceeEEeccceEEEEEecc---cceeh
Confidence 45556666788999999999999999999876541111 122333 34444 488888889888888654 44333
Q ss_pred EeecCC-cceeeeeeeeCCCEEEEEeecCcEEEEC
Q 002615 710 LHELEV-PAFASLCITSANRHVICCLVDGHVVALD 743 (900)
Q Consensus 710 ~~~~~~-~~~~s~~~~~~~~~i~~~~~~g~v~~~d 743 (900)
.+..+. ...-........-.++.+..|+++..++
T Consensus 252 ~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 252 VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 332221 1111222222333556667788777776
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.87 Score=43.10 Aligned_cols=150 Identities=12% Similarity=0.080 Sum_probs=87.1
Q ss_pred CEEEEecC---CCeEEEEECCCCeEEEeeccC-CccccCceeeccCCEEEEEeC-CCcEEEEEcCCCCceeeeEeecCCc
Q 002615 642 QLIWCGSH---DHNLYALDFRNYRCVYKLPCG-GSIFGSPAIDEVHDVLYVAST-SGRLTAISVKALPFHTLWLHELEVP 716 (900)
Q Consensus 642 ~~i~~gs~---dg~l~~~d~~~g~~~w~~~~~-~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~w~~~~~~~ 716 (900)
+.++.++. ...++.+|..+|+.+|..++. ..++.--... .++.+|.-|+ +|.-+.+|.++ .+.+-++...+.
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~-~gd~~y~LTw~egvaf~~d~~t--~~~lg~~~y~Ge 132 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITK-LGDYFYQLTWKEGVAFKYDADT--LEELGRFSYEGE 132 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceee-ccceEEEEEeccceeEEEChHH--hhhhcccccCCc
Confidence 35555432 235999999999999998876 2344433222 3588999887 56667888776 666655544433
Q ss_pred ceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEee--ecC-CCceeccccccccCCCeEEEE-eeCCeEEEEeCCCCce
Q 002615 717 AFASLCITSANRHVICCLVDGHVVALD-SSGSIIWR--CRT-GGPIFAGPCTSFALPSQVLIC-SRNGSIYSFEQESGNL 791 (900)
Q Consensus 717 ~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~--~~~-~~~~~~~~~~~~~~~~~l~~g-~~dg~l~~~d~~tG~~ 791 (900)
. -.+..++..++.+.....++..| ++-...-+ ... +.|+....- ....+|.+|.- .....|..+++++|++
T Consensus 133 G---WgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNE-LE~VdG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 133 G---WGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNE-LEWVDGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred c---eeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccc-eeeeccEEEEeeeeecceEEEcCCCCcE
Confidence 2 24555667777776555666666 43322222 111 222211110 01124555553 3455799999999998
Q ss_pred eeEEecC
Q 002615 792 LWEYSVG 798 (900)
Q Consensus 792 ~w~~~~~ 798 (900)
+-.+++.
T Consensus 209 ~~widlS 215 (262)
T COG3823 209 VAWIDLS 215 (262)
T ss_pred EEEEEcc
Confidence 7545443
|
|
| >KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.069 Score=60.83 Aligned_cols=189 Identities=19% Similarity=0.177 Sum_probs=111.6
Q ss_pred CCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEe--eccCCccccC
Q 002615 599 FSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYK--LPCGGSIFGS 676 (900)
Q Consensus 599 ~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~--~~~~~~~~~~ 676 (900)
.+.+++.+-| .+.+.+.++|.+.|...-. .+...+..... -....+-.+|.+|.+-. +..+.+ +.....+..+
T Consensus 27 e~~~~~stid-~l~a~s~~~g~~~~~l~~~-pvv~~~~~~~~-~~fl~~p~dgsly~l~~--~~sL~Klpftipelv~~~ 101 (903)
T KOG1027|consen 27 ENLLLVSTID-SLHAPSSETGFIKWTLSDD-PVVASPDGVLQ-PAFLPDPRDGSLYTLGN--NLSLTKLPFTIPELVNAS 101 (903)
T ss_pred cccccccccc-cccCccccccceeeeeccC-ccccCCccccc-cccCCCccccceeeccC--CCccccCCccchhhhccC
Confidence 3567778888 7889999999999976432 22222111110 00111233556665432 222222 2223345566
Q ss_pred ceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCC
Q 002615 677 PAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG 755 (900)
Q Consensus 677 ~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~ 755 (900)
|+-.. +|.+|.++.++..+.+|+++ |+..|.+....+. ...++.|-.+.++..+| .+-...|..+..
T Consensus 102 pcrss-dGi~ysg~k~d~~~lvD~~t--g~~~~tf~~~~~~---------~~~v~~grt~ytv~m~d~~~~~~~wn~t~~ 169 (903)
T KOG1027|consen 102 PCRSS-DGILYSGSKQDIWYLVDPKT--GEIDYTFNTAEPI---------KQLVYLGRTNYTVTMYDKNVRGKTWNTTFG 169 (903)
T ss_pred cccCC-CCeEEecccccceEEecCCc--cceeEEEecCCcc---------hhheecccceeEEecccCcccCceeecccc
Confidence 76654 79999999999999999998 9999988776532 34566666666777777 444445766544
Q ss_pred CceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEEecCCceecc
Q 002615 756 GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITAS 804 (900)
Q Consensus 756 ~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 804 (900)
......+.......-.-+..+.+|.+.-+|.++|+.+|.-+..+++...
T Consensus 170 dy~a~~~~~~~~~~~~~~~~~~~g~i~t~D~~~g~~~~~q~~~spvv~~ 218 (903)
T KOG1027|consen 170 DYSAQYPSGVRGEKMSHFHSLGNGYIVTVDSESGEKLWLQDLLSPVVAL 218 (903)
T ss_pred chhccCCCccCCceeEEEeecCCccEEeccCcccceeeccccCCceEEE
Confidence 3322222100111111223334788888999999999987776665443
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.21 Score=51.78 Aligned_cols=155 Identities=14% Similarity=0.140 Sum_probs=92.1
Q ss_pred eeCCceEEEEecCCCeEEEEECCCC---cEEEEE-ecCCceeeceeEecCCCEEEEEeeCCEEEEEECCC---CcEEEEE
Q 002615 553 LKDSDIYLFVGSHSHKFICADAKRS---SVLWEI-KLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLT---GDIYWTF 625 (900)
Q Consensus 553 ~~~~~~~v~igs~~g~l~~~d~~tG---~~~w~~-~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~t---G~~~w~~ 625 (900)
.+++...|++++.+...+.++.... ...|.. ....+. .+..+..+...+.++..-|.+|.+|.-+ |...-..
T Consensus 70 ~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~-~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~l 148 (390)
T KOG3914|consen 70 TSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRP-TAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPIL 148 (390)
T ss_pred cCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCc-ceeeeeeccceEEEEeecCCceeeeeecccccCcchhh
Confidence 4556777888887776444443322 223332 222222 2334444555677777677777776443 3222111
Q ss_pred ecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeecc-CCccccCceeeccCCEEEEEeCCCcEEEEEcCCCC
Q 002615 626 QTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC-GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALP 704 (900)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~-~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~ 704 (900)
.+-.+....++.+++..|.++..|..|++.....-..+-.+-+ +....+.+++.+ +..|+.++.|++|+.||..+
T Consensus 149 -GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~~s-- 224 (390)
T KOG3914|consen 149 -GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDITS-- 224 (390)
T ss_pred -hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEEeccc--
Confidence 1223344556677778888888888887766544333333433 234566666665 46689999999999999998
Q ss_pred ceeeeEee
Q 002615 705 FHTLWLHE 712 (900)
Q Consensus 705 g~~~w~~~ 712 (900)
|+.+-...
T Consensus 225 gk~L~t~d 232 (390)
T KOG3914|consen 225 GKLLDTCD 232 (390)
T ss_pred CCcccccc
Confidence 88875443
|
|
| >PRK07639 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.044 Score=44.92 Aligned_cols=67 Identities=12% Similarity=0.041 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHhcccCC---cccccCCCccc-cCcchHHHHHHHHHh----C--CCchhh--hcCCCHHHHHHHHHhhc
Q 002615 359 SDLLQVIRKAFGHALMV---EEVLHHDNFFT-MGGNSIAAAHVAHNL----G--IDMRLI--YNFPTPSKLEIALLEKK 425 (900)
Q Consensus 359 ~~~~~~~~~~~~~~l~~---~~i~~~~~Ff~-lGgdSl~a~~l~~~l----~--~~~~~~--~~~~t~~~l~~~l~~~~ 425 (900)
+++.+.++++.++.++. +++..+.+|++ +|.||+.+++|...| + ++-..+ -...|+..++.++..+.
T Consensus 4 ~ei~~~i~~il~e~l~~~~~~~i~~d~~l~edL~lDSld~velv~~lE~~fgi~i~d~~~~~~~~~Tv~~l~~~i~~~~ 82 (86)
T PRK07639 4 EALKNAVLKIMEEKLELKNVTHLEETMRLNEDLYIDSVMMLQLIVYIEMDVKLCVPEDEVDPKAFLTVGSLLDFMEELQ 82 (86)
T ss_pred HHHHHHHHHHHHHHhCCCccccCCCCCCcccccCCChHHHHHHHHHHHHHHCCccCHHHccHHHhCCHHHHHHHHHHhh
Confidence 45678889999888876 35788899977 999999999987654 3 444444 46889999999998765
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.52 Score=48.92 Aligned_cols=66 Identities=12% Similarity=0.079 Sum_probs=54.0
Q ss_pred CCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCc
Q 002615 640 PRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPF 705 (900)
Q Consensus 640 ~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g 705 (900)
..|.+..++.+..|..+|.++..++-.+..+..+++...-.++.+.||.|-.+|.++.||....++
T Consensus 205 ~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 205 NEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred ccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence 356788899999999999999998888888877777665555567899999999999999876433
|
|
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.4 Score=54.39 Aligned_cols=43 Identities=21% Similarity=0.489 Sum_probs=37.5
Q ss_pred EecCceEEEc----cCCcEEEEcccCCcEEECceeeChHHHHHHHhC
Q 002615 220 FRTGDFARRI----QSGDLVFLGRKDRTIKINGQRMALEEIEHTLRG 262 (900)
Q Consensus 220 ~~TGDl~~~~----~~G~l~~~GR~dd~ik~~G~rv~~~~iE~~l~~ 262 (900)
||.||+++.. ..-.+.|++|.+-+..+.|++++-.++..++.+
T Consensus 423 YrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~ 469 (612)
T PLN02620 423 YRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKN 469 (612)
T ss_pred EecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHH
Confidence 8999999974 235799999999999999999999999887765
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.064 Score=52.13 Aligned_cols=141 Identities=12% Similarity=0.145 Sum_probs=81.9
Q ss_pred EEEecCCCeEEEEECCCCcEEEEEecCCce----------eeceeEecCCCEEEEEeeCCEEEEE--ECCCCcEEE--EE
Q 002615 560 LFVGSHSHKFICADAKRSSVLWEIKLEGRI----------ECSAAVLADFSQVVVGCYKGKIYFL--DYLTGDIYW--TF 625 (900)
Q Consensus 560 v~igs~~g~l~~~d~~tG~~~w~~~~~~~~----------~~~~~~~~~~~~i~vg~~dg~l~~~--d~~tG~~~w--~~ 625 (900)
+.+|-.+|.+..||..+|...-.++....+ ..+.-+...-+.-+.|+.+-.+..| +-.+|...- ..
T Consensus 168 llaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~ 247 (323)
T KOG0322|consen 168 LLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEI 247 (323)
T ss_pred EEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceE
Confidence 567778999999999998543222211111 0111121111122445444445444 434454322 12
Q ss_pred ecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEc
Q 002615 626 QTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISV 700 (900)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~ 700 (900)
.+...-.....+-+++..+.++++||.+..|+-+++.++-..+.+..-..+.++.++-+.+..++.|++|..|++
T Consensus 248 ~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 248 TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 222222222234446677778899999999999999888776666555556666664567778888888877763
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.54 E-value=3.8 Score=42.91 Aligned_cols=115 Identities=12% Similarity=0.069 Sum_probs=72.1
Q ss_pred eEEEEecCCCeEEEEECCCC-------cEEEE--EecCCceeeceeEecCCCEEEEEeeCCEEEEEECCC-------C--
Q 002615 558 IYLFVGSHSHKFICADAKRS-------SVLWE--IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLT-------G-- 619 (900)
Q Consensus 558 ~~v~igs~~g~l~~~d~~tG-------~~~w~--~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~t-------G-- 619 (900)
+++..|+.|..|..|-...+ ++... ...+.+-...+-++++|+.+..|..+|.+.+|-..+ .
T Consensus 27 ~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~ 106 (434)
T KOG1009|consen 27 NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEA 106 (434)
T ss_pred cceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchh
Confidence 36777777776666644332 22221 222344444566788888888899899999997541 2
Q ss_pred ---cEEEEEec----CCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCc
Q 002615 620 ---DIYWTFQT----CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS 672 (900)
Q Consensus 620 ---~~~w~~~~----~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~ 672 (900)
+..|.... +..-..-..+.+++..+.+|+-|..++.||...|+..-...-+..
T Consensus 107 ~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~ 166 (434)
T KOG1009|consen 107 DLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH 166 (434)
T ss_pred hhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc
Confidence 33454321 111122234556778888999999999999999988766554443
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.50 E-value=3 Score=43.42 Aligned_cols=256 Identities=13% Similarity=0.139 Sum_probs=109.0
Q ss_pred ceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEec---CCc--e-eeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEE
Q 002615 592 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT---CGE--V-KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVY 665 (900)
Q Consensus 592 ~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~---~~~--~-~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w 665 (900)
.+.+.++ +.-|+....|.|+ ...+|-.-|+... ... . .....+.. +..|+....+.|+. . .+|-..|
T Consensus 21 dV~F~d~-~~G~~VG~~g~il--~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~ivG~~g~ll~-T-~DgG~tW 93 (302)
T PF14870_consen 21 DVAFVDP-NHGWAVGAYGTIL--KTTDGGKTWQPVSLDLDNPFDYHLNSISFDG--NEGWIVGEPGLLLH-T-TDGGKTW 93 (302)
T ss_dssp EEEESSS-S-EEEEETTTEEE--EESSTTSS-EE-----S-----EEEEEEEET--TEEEEEEETTEEEE-E-SSTTSS-
T ss_pred EEEEecC-CEEEEEecCCEEE--EECCCCccccccccCCCccceeeEEEEEecC--CceEEEcCCceEEE-e-cCCCCCc
Confidence 3444433 3444444456553 3456666676432 111 1 11222232 34455544554332 2 3344445
Q ss_pred ee-c----cCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcc--eeeeeeeeCCCEEEEEeecCc
Q 002615 666 KL-P----CGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPA--FASLCITSANRHVICCLVDGH 738 (900)
Q Consensus 666 ~~-~----~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~--~~s~~~~~~~~~i~~~~~~g~ 738 (900)
+. . ..+..+....+. ++.+++.+..|.+|.- .+ |-.-|+....... +..... ..++.+++.+..|.
T Consensus 94 ~~v~l~~~lpgs~~~i~~l~--~~~~~l~~~~G~iy~T--~D--gG~tW~~~~~~~~gs~~~~~r-~~dG~~vavs~~G~ 166 (302)
T PF14870_consen 94 ERVPLSSKLPGSPFGITALG--DGSAELAGDRGAIYRT--TD--GGKTWQAVVSETSGSINDITR-SSDGRYVAVSSRGN 166 (302)
T ss_dssp EE----TT-SS-EEEEEEEE--TTEEEEEETT--EEEE--SS--TTSSEEEEE-S----EEEEEE--TTS-EEEEETTSS
T ss_pred EEeecCCCCCCCeeEEEEcC--CCcEEEEcCCCcEEEe--CC--CCCCeeEcccCCcceeEeEEE-CCCCcEEEEECccc
Confidence 43 2 223333323333 3677777778877653 23 6678876543322 222222 34555555556677
Q ss_pred EEEECCCCCEEeeec---CCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEEecCCc---e--ecccccccc
Q 002615 739 VVALDSSGSIIWRCR---TGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDP---I--TASAYIDEH 810 (900)
Q Consensus 739 v~~~d~~G~~~w~~~---~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~---~--~~~~~~~~~ 810 (900)
++.--..|+-.|+.. ....+.+. ....++.+|+.+..|.|++=+.......|....... - +..+...
T Consensus 167 ~~~s~~~G~~~w~~~~r~~~~riq~~---gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~-- 241 (302)
T PF14870_consen 167 FYSSWDPGQTTWQPHNRNSSRRIQSM---GFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYR-- 241 (302)
T ss_dssp EEEEE-TT-SS-EEEE--SSS-EEEE---EE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEES--
T ss_pred EEEEecCCCccceEEccCccceehhc---eecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEec--
Confidence 765434455455532 22222222 234568999999888888776333444565432111 0 1111111
Q ss_pred cccccccccCCCeEEEEEcCCCcEEEEEeecCcccccccccccceeeeeeec----cCCccccCceeeCCEEEEeeeCCe
Q 002615 811 LQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLE----LQGDIFSSPVMIGGRVFVGCRDDY 886 (900)
Q Consensus 811 ~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~ss~~~~~~~l~vg~~dg~ 886 (900)
.++.+|+++.+|.|++= .+.| +.|.+.. .+++...-..+.+++-|+-..+|.
T Consensus 242 ----------~~~~~wa~gg~G~l~~S-~DgG-------------ktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ 297 (302)
T PF14870_consen 242 ----------PPNEIWAVGGSGTLLVS-TDGG-------------KTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGV 297 (302)
T ss_dssp ----------SSS-EEEEESTT-EEEE-SSTT-------------SS-EE-GGGTTSSS---EEEEEETTEEEEE-STTE
T ss_pred ----------CCCCEEEEeCCccEEEe-CCCC-------------ccceECccccCCCCceEEEEEcCCCceEEECCCcE
Confidence 25778888888866542 2222 3343332 233332222235578888888888
Q ss_pred EEEE
Q 002615 887 IYCI 890 (900)
Q Consensus 887 l~~l 890 (900)
|..|
T Consensus 298 ll~~ 301 (302)
T PF14870_consen 298 LLRY 301 (302)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8766
|
|
| >COG0236 AcpP Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.036 Score=44.92 Aligned_cols=65 Identities=18% Similarity=0.220 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcccCCc--ccccCCCcc-ccCcchHHHHHHHHHh------CCCchhhhcCCCHHHHHHHHHhh
Q 002615 360 DLLQVIRKAFGHALMVE--EVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 424 (900)
Q Consensus 360 ~~~~~~~~~~~~~l~~~--~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~~t~~~l~~~l~~~ 424 (900)
.+...++++..+.|+.+ .+..+++|. ++|.|||.++.|.-.| .++...+...+|+..++.++...
T Consensus 5 ~~~~~i~~ii~e~l~~~~~~i~~~~~~~~dlg~DSld~veLi~~lE~~f~i~i~~e~~~~~~tv~~l~~~i~~~ 78 (80)
T COG0236 5 AIEERVKDIIAEQLGVDEEEITTEASFVEDLGLDSLDLVELVMALEEEFGIEIPDEELENIKTVGDLVDYIEEL 78 (80)
T ss_pred HHHHHHHHHHHHHhCCchhhcCcccccccccCccHHHHHHHHHHHHHHHCCcCCHHHHHHHHhHHHHHHHHHHh
Confidence 46778888888888774 477778887 5999999999997654 47788889999999999998764
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.24 Score=42.12 Aligned_cols=89 Identities=13% Similarity=0.211 Sum_probs=62.5
Q ss_pred CCeEEEEeeCCeEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecCcccccc
Q 002615 769 PSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKEN 848 (900)
Q Consensus 769 ~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~~~~~ 848 (900)
.+.|++||.|..|+.|+. .++++++...+.+....... .+.+..+..+|+|-+|+..
T Consensus 15 ~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~-------------~~~F~Y~l~NGTVGvY~~~-------- 71 (111)
T PF14783_consen 15 ENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLG-------------GGRFAYALANGTVGVYDRS-------- 71 (111)
T ss_pred cceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcC-------------CCEEEEEecCCEEEEEeCc--------
Confidence 367999999999999974 47888887777665543222 5678889999999999875
Q ss_pred cccccceeeeeeeccCCccccCceeeC-----CEEEEeeeCCeE
Q 002615 849 QSKDHMVQEFAKLELQGDIFSSPVMIG-----GRVFVGCRDDYI 887 (900)
Q Consensus 849 ~~~~~~~~~~~~~~l~~~~~ss~~~~~-----~~l~vg~~dg~l 887 (900)
+.+|+.+....+.+....+- ..|.+|-.+|.+
T Consensus 72 -------~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 72 -------QRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred -------ceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 44566665555444333321 268888888865
|
|
| >PRK05087 D-alanine--poly(phosphoribitol) ligase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.043 Score=43.82 Aligned_cols=63 Identities=13% Similarity=0.189 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcccCCc--ccccCCCccccCc-chHHHHHHHHHh----C--CCchhhhc--CCCHHHHHHHHHh
Q 002615 361 LLQVIRKAFGHALMVE--EVLHHDNFFTMGG-NSIAAAHVAHNL----G--IDMRLIYN--FPTPSKLEIALLE 423 (900)
Q Consensus 361 ~~~~~~~~~~~~l~~~--~i~~~~~Ff~lGg-dSl~a~~l~~~l----~--~~~~~~~~--~~t~~~l~~~l~~ 423 (900)
+++.+++++.+..+.+ .+..++++|+.|+ |||.+++|...| + ++...+-. +.|+..++.++.+
T Consensus 3 i~~~I~~iL~~~~~~~~~~~~~d~~l~~~g~lDSl~~veli~~lE~~fgi~i~~~e~~~~~f~Tv~~i~~~v~~ 76 (78)
T PRK05087 3 FKEQVLDILEELTGEDIVSENMDEDLFEEGILDSMGTVELLVELENRFDIEVPVSEFDRDDWNTPNKIIAKVEE 76 (78)
T ss_pred HHHHHHHHHHHHhCCChhccCCccchhhccCcchHHHHHHHHHHHHHhCCccChHhcCHHhhcCHHHHHHHHHH
Confidence 5567777777776554 4668899999996 999999998665 3 55555544 7899999988865
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.33 E-value=1.2 Score=51.42 Aligned_cols=170 Identities=15% Similarity=0.169 Sum_probs=83.8
Q ss_pred EEEEEECCCCcEEEEEecCCc-eeeeeeEeCCCCEEEE-ecCC------CeEEEEECCCCeEEEeeccC----CccccCc
Q 002615 610 KIYFLDYLTGDIYWTFQTCGE-VKCQPVVDAPRQLIWC-GSHD------HNLYALDFRNYRCVYKLPCG----GSIFGSP 677 (900)
Q Consensus 610 ~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~~~~~~i~~-gs~d------g~l~~~d~~~g~~~w~~~~~----~~~~~~~ 677 (900)
.+.+||+.+++-.+....... .....++. ++.||+ |+.+ ..+++||+.+.+ |..-.. ....+ .
T Consensus 302 ~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~--W~~~a~M~~~R~~~~-v 376 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQ--WTPVAPMNTKRSDFG-V 376 (571)
T ss_pred eeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCc--eeccCCccCccccce-e
Confidence 577889888733222222221 12222232 245554 6666 357889988776 865221 11111 1
Q ss_pred eeeccCCEEEE-EeCCC-----cEEEEEcCCCCceeeeEeecCCcc-eeeeeeeeCCCEEEEEe-ec------CcEEEEC
Q 002615 678 AIDEVHDVLYV-ASTSG-----RLTAISVKALPFHTLWLHELEVPA-FASLCITSANRHVICCL-VD------GHVVALD 743 (900)
Q Consensus 678 ~~~~~~~~l~v-~t~~g-----~l~~~~~~~~~g~~~w~~~~~~~~-~~s~~~~~~~~~i~~~~-~~------g~v~~~d 743 (900)
+.- ++.||+ |..+| .+-+||+.+ ..|....+-.. ........-++.+|+.+ .+ ..+.+||
T Consensus 377 ~~l--~g~iYavGG~dg~~~l~svE~YDp~~----~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YD 450 (571)
T KOG4441|consen 377 AVL--DGKLYAVGGFDGEKSLNSVECYDPVT----NKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYD 450 (571)
T ss_pred EEE--CCEEEEEeccccccccccEEEecCCC----CcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEc
Confidence 222 366665 44443 466777664 56776543322 23333444566776643 22 3467888
Q ss_pred -CCCCEEeeecCCCcee-ccccccccCCCeEEEE-eeCC-----eEEEEeCCCCceeeEE
Q 002615 744 -SSGSIIWRCRTGGPIF-AGPCTSFALPSQVLIC-SRNG-----SIYSFEQESGNLLWEY 795 (900)
Q Consensus 744 -~~G~~~w~~~~~~~~~-~~~~~~~~~~~~l~~g-~~dg-----~l~~~d~~tG~~~w~~ 795 (900)
.++ .|+....-+.- +... ....++.||+. +.+| .+.+||+++. .|+.
T Consensus 451 P~t~--~W~~~~~M~~~R~~~g-~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~--~W~~ 505 (571)
T KOG4441|consen 451 PETN--TWTLIAPMNTRRSGFG-VAVLNGKIYVVGGFDGTSALSSVERYDPETN--QWTM 505 (571)
T ss_pred CCCC--ceeecCCcccccccce-EEEECCEEEEECCccCCCccceEEEEcCCCC--ceeE
Confidence 544 36543221111 1111 12235566654 4444 3788888765 4554
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.32 E-value=1.4 Score=50.91 Aligned_cols=212 Identities=16% Similarity=0.227 Sum_probs=102.5
Q ss_pred CeEEEEECCCCcEEEEEe--cC-CceeeceeEecCCCEEE-EEeeC-C-----EEEEEECCCCcEEEEEecCCce--eee
Q 002615 567 HKFICADAKRSSVLWEIK--LE-GRIECSAAVLADFSQVV-VGCYK-G-----KIYFLDYLTGDIYWTFQTCGEV--KCQ 634 (900)
Q Consensus 567 g~l~~~d~~tG~~~w~~~--~~-~~~~~~~~~~~~~~~i~-vg~~d-g-----~l~~~d~~tG~~~w~~~~~~~~--~~~ 634 (900)
..+.+||+.+++ |..- .. .+...++++..+ .|| +|.++ | .+++||+.+++ |.. ..... .+.
T Consensus 301 ~~ve~yd~~~~~--w~~~a~m~~~r~~~~~~~~~~--~lYv~GG~~~~~~~l~~ve~YD~~~~~--W~~-~a~M~~~R~~ 373 (571)
T KOG4441|consen 301 RSVECYDPKTNE--WSSLAPMPSPRCRVGVAVLNG--KLYVVGGYDSGSDRLSSVERYDPRTNQ--WTP-VAPMNTKRSD 373 (571)
T ss_pred ceeEEecCCcCc--EeecCCCCcccccccEEEECC--EEEEEccccCCCcccceEEEecCCCCc--eec-cCCccCcccc
Confidence 368899999885 6532 22 233334444433 455 56667 3 68899988887 864 22111 111
Q ss_pred eeEeCCCCEEEE-ecCCC-----eEEEEECCCCeEEEeeccCCc-cccCceeeccCCEEEEEeC-C------CcEEEEEc
Q 002615 635 PVVDAPRQLIWC-GSHDH-----NLYALDFRNYRCVYKLPCGGS-IFGSPAIDEVHDVLYVAST-S------GRLTAISV 700 (900)
Q Consensus 635 ~~~~~~~~~i~~-gs~dg-----~l~~~d~~~g~~~w~~~~~~~-~~~~~~~~~~~~~l~v~t~-~------g~l~~~~~ 700 (900)
..+..-++.||+ |+.|| .+-+||+.+. .|..-..-. ..+......-++.||+... + ..+.+||+
T Consensus 374 ~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~--~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP 451 (571)
T KOG4441|consen 374 FGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTN--KWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDP 451 (571)
T ss_pred ceeEEECCEEEEEeccccccccccEEEecCCCC--cccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcC
Confidence 111112355664 65554 4778887754 465433111 1111111112477776442 2 34678887
Q ss_pred CCCCceeeeEeecCCcce-eeeeeeeCCCEEEE-EeecC-----cEEEEC-CCCCEEeeecCCCce-eccccccccCCCe
Q 002615 701 KALPFHTLWLHELEVPAF-ASLCITSANRHVIC-CLVDG-----HVVALD-SSGSIIWRCRTGGPI-FAGPCTSFALPSQ 771 (900)
Q Consensus 701 ~~~~g~~~w~~~~~~~~~-~s~~~~~~~~~i~~-~~~~g-----~v~~~d-~~G~~~w~~~~~~~~-~~~~~~~~~~~~~ 771 (900)
.+ -.|+....-+.. ........++.||+ |+.++ .+.+|| .+. .|+.-..-.. .+...+ ...++.
T Consensus 452 ~t----~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~--~W~~v~~m~~~rs~~g~-~~~~~~ 524 (571)
T KOG4441|consen 452 ET----NTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETN--QWTMVAPMTSPRSAVGV-VVLGGK 524 (571)
T ss_pred CC----CceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCC--ceeEcccCccccccccE-EEECCE
Confidence 75 467664432211 11223333555555 44444 267788 432 3554321111 111111 222445
Q ss_pred EEE-EeeCC-----eEEEEeCCCCceeeEEe
Q 002615 772 VLI-CSRNG-----SIYSFEQESGNLLWEYS 796 (900)
Q Consensus 772 l~~-g~~dg-----~l~~~d~~tG~~~w~~~ 796 (900)
+|+ |..+| .+-+||+.+. .|+..
T Consensus 525 ly~vGG~~~~~~l~~ve~ydp~~d--~W~~~ 553 (571)
T KOG4441|consen 525 LYAVGGFDGNNNLNTVECYDPETD--TWTEV 553 (571)
T ss_pred EEEEecccCccccceeEEcCCCCC--ceeeC
Confidence 554 34443 5777877765 36543
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=95.26 E-value=1.9 Score=42.01 Aligned_cols=124 Identities=10% Similarity=0.059 Sum_probs=73.7
Q ss_pred EEEEEeeCCEEEEEECCCCcEEEEEec--CCceeeeeeEeCCCCEEEE--ecCCCeEEEEECCCCeEEEeeccCCccccC
Q 002615 601 QVVVGCYKGKIYFLDYLTGDIYWTFQT--CGEVKCQPVVDAPRQLIWC--GSHDHNLYALDFRNYRCVYKLPCGGSIFGS 676 (900)
Q Consensus 601 ~i~vg~~dg~l~~~d~~tG~~~w~~~~--~~~~~~~~~~~~~~~~i~~--gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~ 676 (900)
..+.|. ..||.++..+... -.... .+. .....+.+++..+.+ |..+..+..||.+ ++.+..+.. .....
T Consensus 33 ks~~~~--~~l~~~~~~~~~~-~~i~l~~~~~-I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~--~~~n~ 105 (194)
T PF08662_consen 33 KSYYGE--FELFYLNEKNIPV-ESIELKKEGP-IHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGT--QPRNT 105 (194)
T ss_pred ceEEee--EEEEEEecCCCcc-ceeeccCCCc-eEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecC--CCceE
Confidence 344443 4588887554433 23333 223 444566776666433 5556789999986 666666542 23334
Q ss_pred ceeeccCCEEEEEeC---CCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEee
Q 002615 677 PAIDEVHDVLYVAST---SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLV 735 (900)
Q Consensus 677 ~~~~~~~~~l~v~t~---~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~ 735 (900)
...++.+..+.+++. .|.+..||.++ .+.+-+.+. ........++++.++.+++.
T Consensus 106 i~wsP~G~~l~~~g~~n~~G~l~~wd~~~--~~~i~~~~~--~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 106 ISWSPDGRFLVLAGFGNLNGDLEFWDVRK--KKKISTFEH--SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred EEECCCCCEEEEEEccCCCcEEEEEECCC--CEEeecccc--CcEEEEEEcCCCCEEEEEEe
Confidence 556666777877753 46799999886 666654432 22345566777777776654
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.21 E-value=1.5 Score=49.61 Aligned_cols=143 Identities=14% Similarity=0.160 Sum_probs=85.5
Q ss_pred CceEEEEecCCCeEEEEECCCCcEEEEEecCCceeece----------eEecC--CCEEEEEeeCCEEEEEECCCCcEEE
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSA----------AVLAD--FSQVVVGCYKGKIYFLDYLTGDIYW 623 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~----------~~~~~--~~~i~vg~~dg~l~~~d~~tG~~~w 623 (900)
..|.+..|+|+- |..+|..+-+.+-....+.....++ ..++. .-.|.++.-.|.|..+|...+..+-
T Consensus 25 ~~GLiAygshsl-V~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~ 103 (1062)
T KOG1912|consen 25 PSGLIAYGSHSL-VSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN 103 (1062)
T ss_pred ccceEEEecCce-EEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh
Confidence 356778888875 8889988777665555543211111 11111 1135556667999999998887653
Q ss_pred EEecCCceee----eeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeec-cCCEEEEEeCCCcEEEE
Q 002615 624 TFQTCGEVKC----QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDE-VHDVLYVASTSGRLTAI 698 (900)
Q Consensus 624 ~~~~~~~~~~----~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~-~~~~l~v~t~~g~l~~~ 698 (900)
.++.+..... .+.-++....+.+-.....+..||..+|+..|+++....+.+...+++ +...+.+-+..|.+...
T Consensus 104 ~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~ 183 (1062)
T KOG1912|consen 104 WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSC 183 (1062)
T ss_pred hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEE
Confidence 3433322211 122233334555555567899999999999999988766655444433 12456666666766655
Q ss_pred E
Q 002615 699 S 699 (900)
Q Consensus 699 ~ 699 (900)
+
T Consensus 184 ~ 184 (1062)
T KOG1912|consen 184 K 184 (1062)
T ss_pred e
Confidence 4
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=95.11 E-value=7.5 Score=44.23 Aligned_cols=221 Identities=11% Similarity=0.063 Sum_probs=122.4
Q ss_pred CceEEEEecC-CCeEEEEECCCCcEEEEEecCC----------------ce----eeceeEecCCCEEEEE-eeCCEEEE
Q 002615 556 SDIYLFVGSH-SHKFICADAKRSSVLWEIKLEG----------------RI----ECSAAVLADFSQVVVG-CYKGKIYF 613 (900)
Q Consensus 556 ~~~~v~igs~-~g~l~~~d~~tG~~~w~~~~~~----------------~~----~~~~~~~~~~~~i~vg-~~dg~l~~ 613 (900)
++.++|+-.. +.++-.+++++-+..--...+. .+ +..+-+.+++..++.. -+.+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 4567888663 5677777776544332222211 01 1122234455444433 35677899
Q ss_pred EECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCC----CeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEE
Q 002615 614 LDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD----HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVA 689 (900)
Q Consensus 614 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~d----g~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~ 689 (900)
+|.++-++.|+...++... ...++.+++.+|+.+++ +++...+..+...+..+...+.. ....++...+++
T Consensus 220 ID~etmeV~~qV~Vdgnpd-~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~ie----a~vkdGK~~~V~ 294 (635)
T PRK02888 220 VDAETMEVAWQVMVDGNLD-NVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIE----EAVKAGKFKTIG 294 (635)
T ss_pred EECccceEEEEEEeCCCcc-cceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHH----HhhhCCCEEEEC
Confidence 9999999999998876432 23445577888888643 34555665544433334332211 112234666663
Q ss_pred eCCCcEEEEEcCCC--Cc-eeeeEeecCCcceeeeeeeeCCCEEEEEee-cCcEEEEC-CCCCE------------Eeee
Q 002615 690 STSGRLTAISVKAL--PF-HTLWLHELEVPAFASLCITSANRHVICCLV-DGHVVALD-SSGSI------------IWRC 752 (900)
Q Consensus 690 t~~g~l~~~~~~~~--~g-~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~-~g~v~~~d-~~G~~------------~w~~ 752 (900)
++.+..+|..+. .+ +.+-....+... ....+++++.++|+++. +..+.++| .+.+. .-+.
T Consensus 295 --gn~V~VID~~t~~~~~~~v~~yIPVGKsP-HGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev 371 (635)
T PRK02888 295 --GSKVPVVDGRKAANAGSALTRYVPVPKNP-HGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP 371 (635)
T ss_pred --CCEEEEEECCccccCCcceEEEEECCCCc-cceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee
Confidence 467888996641 01 233333333322 34567788888888765 67889998 55432 2222
Q ss_pred cCCCceeccc-cccccCCCeEEEE-eeCCeEEEEeCCC
Q 002615 753 RTGGPIFAGP-CTSFALPSQVLIC-SRNGSIYSFEQES 788 (900)
Q Consensus 753 ~~~~~~~~~~-~~~~~~~~~l~~g-~~dg~l~~~d~~t 788 (900)
..+. .| ...++.+++.|+. -.|..|..||.++
T Consensus 372 evGl----GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 372 ELGL----GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccCC----CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 2221 12 1124445666665 3467788888765
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=95.07 E-value=3.2 Score=42.77 Aligned_cols=133 Identities=11% Similarity=0.085 Sum_probs=72.0
Q ss_pred EEEecCCC-eEEEEECCCCeEEEeeccC--CccccCceeeccCCEEEEE-----eCCCcEEEEEcCCCCceeeeEeecCC
Q 002615 644 IWCGSHDH-NLYALDFRNYRCVYKLPCG--GSIFGSPAIDEVHDVLYVA-----STSGRLTAISVKALPFHTLWLHELEV 715 (900)
Q Consensus 644 i~~gs~dg-~l~~~d~~~g~~~w~~~~~--~~~~~~~~~~~~~~~l~v~-----t~~g~l~~~~~~~~~g~~~w~~~~~~ 715 (900)
++++-.-| .++.||..+|+........ -..+..-+++.++..||+. +..|.|-.||... ....+-++....
T Consensus 20 vafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~-~~~ri~E~~s~G 98 (305)
T PF07433_consen 20 VAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR-GYRRIGEFPSHG 98 (305)
T ss_pred EEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC-CcEEEeEecCCC
Confidence 44443333 4677888888776544332 2234445566655666653 2357888898772 244444443332
Q ss_pred cceeeeeeeeCCCEEEEEe------------------ecCcEEEEC-CCCCEEee--ecCCCceeccccccccCCCeEEE
Q 002615 716 PAFASLCITSANRHVICCL------------------VDGHVVALD-SSGSIIWR--CRTGGPIFAGPCTSFALPSQVLI 774 (900)
Q Consensus 716 ~~~~s~~~~~~~~~i~~~~------------------~~g~v~~~d-~~G~~~w~--~~~~~~~~~~~~~~~~~~~~l~~ 774 (900)
-.-....+.+++..++++. ++-.+..+| .+|+++-+ ++......|.--+....++.+++
T Consensus 99 IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~ 178 (305)
T PF07433_consen 99 IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAF 178 (305)
T ss_pred cChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEE
Confidence 1112233444555666653 234577787 88888744 43233333433344555778888
Q ss_pred Eee
Q 002615 775 CSR 777 (900)
Q Consensus 775 g~~ 777 (900)
+..
T Consensus 179 a~Q 181 (305)
T PF07433_consen 179 AMQ 181 (305)
T ss_pred EEe
Confidence 764
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.4 Score=55.00 Aligned_cols=282 Identities=11% Similarity=0.069 Sum_probs=146.3
Q ss_pred ccccccccccccccccceEEeeCCceEEEEecCCCeEEEEEC--CCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCE
Q 002615 533 IQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADA--KRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGK 610 (900)
Q Consensus 533 ~~~~W~~~~~~~v~~sp~v~~~~~~~~v~igs~~g~l~~~d~--~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~ 610 (900)
..+.|.....+||.... .......+|+|++.|....+=+ .+|-..|....-+.+.. ...... .++.-+ +..
T Consensus 45 ~~L~~~~~~~G~vS~v~---fd~~eel~w~G~~gG~stS~~~s~~~~yssf~v~s~~~v~~-~~~~~~--~i~~ls-~~a 117 (1118)
T KOG1275|consen 45 AELISVGASYGTVSSVH---FDLHEELLWRGSSGGHSTSLLLSHRTGYSSFQVHSIDGVRR-IEPTES--GIFTLS-KTA 117 (1118)
T ss_pred cceeeeccccccccccc---cCchHHhheecccCCceeeeecccccceEEEEEeccchhhh-hhhhhh--hheeee-HHH
Confidence 34567777666654322 1225678999999887665543 33445555443322211 111111 122222 111
Q ss_pred EEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEe
Q 002615 611 IYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAS 690 (900)
Q Consensus 611 l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t 690 (900)
+ ..-...|.+...+...+.-.......-+...+..|.....+..+|..+++.........+-.. ++-.++..+++|.
T Consensus 118 l-r~~~r~gl~~~~~~~~s~~~M~~~~~~~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~--imR~Nnr~lf~G~ 194 (1118)
T KOG1275|consen 118 L-RATTRQGLPVFDFTCPSMTKMASSLHMGPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVT--IMRYNNRNLFCGD 194 (1118)
T ss_pred h-hhhhccCceeecccCCCHHHHHHHhccCCcceeecchhhheeeeecccceeeeeeeccCCceE--EEEecCcEEEeec
Confidence 1 112234555555544332111111111334566666777899999999888776655432221 2223347788999
Q ss_pred CCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEeeecCCC---ce--eccccc
Q 002615 691 TSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG---PI--FAGPCT 764 (900)
Q Consensus 691 ~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w~~~~~~---~~--~~~~~~ 764 (900)
..|.+...|+++ .+.+.+++.+....+. +...++.++.+++.++.+-+. .---.+|....-. |+ -..|.+
T Consensus 195 t~G~V~LrD~~s--~~~iht~~aHs~siSD--fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~f 270 (1118)
T KOG1275|consen 195 TRGTVFLRDPNS--FETIHTFDAHSGSISD--FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQF 270 (1118)
T ss_pred ccceEEeecCCc--Cceeeeeeccccceee--eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchh
Confidence 999999999998 8888888887765443 444677888887766553332 1111134332111 11 111110
Q ss_pred ---cccCCCeEEEEeeCCeEEEEeCCC-Cce-e--eEEecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEE
Q 002615 765 ---SFALPSQVLICSRNGSIYSFEQES-GNL-L--WEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHIL 837 (900)
Q Consensus 765 ---~~~~~~~l~~g~~dg~l~~~d~~t-G~~-~--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~ 837 (900)
.......+.+.+..|.....|..+ +.. . ......+....... ...+++.+.+|..+|.|..|
T Consensus 271 lrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fD-----------iSsn~~alafgd~~g~v~~w 339 (1118)
T KOG1275|consen 271 LRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFD-----------ISSNGDALAFGDHEGHVNLW 339 (1118)
T ss_pred hhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEE-----------ecCCCceEEEecccCcEeee
Confidence 011124577777778777776322 111 0 01111111111111 12348889999999999999
Q ss_pred Ee
Q 002615 838 RV 839 (900)
Q Consensus 838 d~ 839 (900)
..
T Consensus 340 a~ 341 (1118)
T KOG1275|consen 340 AD 341 (1118)
T ss_pred cC
Confidence 73
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=95.03 E-value=2.5 Score=43.22 Aligned_cols=225 Identities=12% Similarity=0.132 Sum_probs=117.2
Q ss_pred CceEEEEecCCCeEEEEE-CCCCcEEEEEe-cCCceee-ceeEecCCCEEEEEeeCCEEEEEECCCC----cEEEEEecC
Q 002615 556 SDIYLFVGSHSHKFICAD-AKRSSVLWEIK-LEGRIEC-SAAVLADFSQVVVGCYKGKIYFLDYLTG----DIYWTFQTC 628 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d-~~tG~~~w~~~-~~~~~~~-~~~~~~~~~~i~vg~~dg~l~~~d~~tG----~~~w~~~~~ 628 (900)
.+..||..+.|..+..|- .++|+ .|.-- ......+ ......+...+++|-.+|.++-+....- .....+..+
T Consensus 35 ~e~gv~~~s~drtvrv~lkrds~q-~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h 113 (404)
T KOG1409|consen 35 KEEGVISVSEDRTVRVWLKRDSGQ-YWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAH 113 (404)
T ss_pred CCCCeEEccccceeeeEEeccccc-cCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhh
Confidence 455677788887777764 34444 46421 1111111 2233445557999999999988764321 111112223
Q ss_pred CceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeecc--CCEEEEEeCCCcEEEEEcCCCCce
Q 002615 629 GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEV--HDVLYVASTSGRLTAISVKALPFH 706 (900)
Q Consensus 629 ~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~--~~~l~v~t~~g~l~~~~~~~~~g~ 706 (900)
.......+++.....|++.+.|..+.---.+.|+-+ ++..+..++.... -...|+|...|.+.........-.
T Consensus 114 ~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~l-----g~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~ 188 (404)
T KOG1409|consen 114 QARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRL-----GGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQ 188 (404)
T ss_pred hcceeeEEecCCceeEEEeccccceEEEeeccCCcc-----cceEeeccCCCCceeeEEEEecccccceEEEEEeecCCc
Confidence 333344455544556666666654432222222211 2223322222110 125677777777766554432244
Q ss_pred eeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-C--CCCEEeeec-CCCceeccccccccCCCeEEEEeeCCeEE
Q 002615 707 TLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-S--SGSIIWRCR-TGGPIFAGPCTSFALPSQVLICSRNGSIY 782 (900)
Q Consensus 707 ~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~--~G~~~w~~~-~~~~~~~~~~~~~~~~~~l~~g~~dg~l~ 782 (900)
++.+...+............++.++.|..+..+..+| . .|.. .... ..+.+..... ...-..++....||.|.
T Consensus 189 ~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~-~el~gh~~kV~~l~~--~~~t~~l~S~~edg~i~ 265 (404)
T KOG1409|consen 189 LITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA-YELQGHNDKVQALSY--AQHTRQLISCGEDGGIV 265 (404)
T ss_pred eEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCccee-eeeccchhhhhhhhh--hhhheeeeeccCCCeEE
Confidence 5555555544445556666778899999898999998 2 3322 2211 1111111111 11234688888899999
Q ss_pred EEeCCCC
Q 002615 783 SFEQESG 789 (900)
Q Consensus 783 ~~d~~tG 789 (900)
+||.+..
T Consensus 266 ~w~mn~~ 272 (404)
T KOG1409|consen 266 VWNMNVK 272 (404)
T ss_pred EEeccce
Confidence 9997653
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.73 Score=53.00 Aligned_cols=180 Identities=16% Similarity=0.180 Sum_probs=110.8
Q ss_pred CceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeee
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 635 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 635 (900)
+..++..|.++..+..+|..++++.........- ..++-.++..+++|...|+|...|+.+-+.+.++..+....+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~--v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD- 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG--VTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD- 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCc--eEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceee-
Confidence 3445677777778999999999887666555421 1233345568999999999999999999999999887765543
Q ss_pred eEeCCCCEEEEecCCCe---------EEEEECCCCeEEEeeccC-Cc--cccCceeeccCCEEEEEeCCCcEEEEEcCCC
Q 002615 636 VVDAPRQLIWCGSHDHN---------LYALDFRNYRCVYKLPCG-GS--IFGSPAIDEVHDVLYVASTSGRLTAISVKAL 703 (900)
Q Consensus 636 ~~~~~~~~i~~gs~dg~---------l~~~d~~~g~~~w~~~~~-~~--~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~ 703 (900)
++-.++.+++.+..+. |.+||++..+.+--+... ++ +.-.|.+ ..++.|.+..|.....|..+.
T Consensus 223 -fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl---~t~~~V~S~sGq~q~vd~~~l 298 (1118)
T KOG1275|consen 223 -FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSL---TTRLAVTSQSGQFQFVDTATL 298 (1118)
T ss_pred -eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccc---cceEEEEecccceeecccccc
Confidence 4444566666554433 344555443332222111 11 1112222 256788888888877773321
Q ss_pred Ccee---eeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC
Q 002615 704 PFHT---LWLHELEVPAFASLCITSANRHVICCLVDGHVVALD 743 (900)
Q Consensus 704 ~g~~---~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d 743 (900)
+.+ ........+......++..++.+.+|..+|.|..|.
T Consensus 299 -sNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 299 -SNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred -CCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 111 111222223345556667778888888888888887
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=94.82 E-value=1.2 Score=37.92 Aligned_cols=93 Identities=14% Similarity=0.199 Sum_probs=64.6
Q ss_pred CCceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeee
Q 002615 555 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 634 (900)
Q Consensus 555 ~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 634 (900)
|....|.+||.|..|+.|+- .+++++....+.+.. ......+++..+..+|+|-.|+. .+.+|+.+....+.+.
T Consensus 13 dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~--L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~~~~ 86 (111)
T PF14783_consen 13 DGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTS--LCSLGGGRFAYALANGTVGVYDR--SQRLWRIKSKNQVTSM 86 (111)
T ss_pred CCcceEEEecCCcEEEEEeC--CcEEEEEecccceEE--EEEcCCCEEEEEecCCEEEEEeC--cceeeeeccCCCeEEE
Confidence 34578999999999999984 478888887777632 22233356777888999999983 5678999877776665
Q ss_pred eeEeCCC---CEEEEecCCCeE
Q 002615 635 PVVDAPR---QLIWCGSHDHNL 653 (900)
Q Consensus 635 ~~~~~~~---~~i~~gs~dg~l 653 (900)
..++.++ .-|++|-.+|.+
T Consensus 87 ~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 87 AFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred EEEcCCCCCceEEEEEecCCeE
Confidence 5554321 136666555543
|
|
| >PTZ00171 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.068 Score=48.60 Aligned_cols=68 Identities=15% Similarity=0.174 Sum_probs=56.8
Q ss_pred chHHHHHHHHHHhcccCC--cccccCCCcc-ccCcchHHHHHHHHHh------CCCchhhhcCCCHHHHHHHHHhhc
Q 002615 358 ASDLLQVIRKAFGHALMV--EEVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 425 (900)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~--~~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~~t~~~l~~~l~~~~ 425 (900)
.+++.+.+.+++++.+++ +.+.++.+|. ++|-|||..+.|...| .++..++-...|+..+..++.++.
T Consensus 68 ~~~v~~~l~eiiae~l~vd~~~I~~ds~~~~dLg~DSLd~veLv~~LEdeFgI~Ipded~~~i~TV~dlvd~V~~~~ 144 (148)
T PTZ00171 68 KEDVLTRVKKVVKNFEKVDASKITPESNFVKDLGADSLDVVELLIAIEQEFNLTIPDHDAEKIKTVQDAIDYIEQNN 144 (148)
T ss_pred HHHHHHHHHHHHHHHhCCCHhhCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCccCHHHHHHCCCHHHHHHHHHHHH
Confidence 467888999999988876 4588899987 9999999999987655 467777889999999999997654
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.71 E-value=1.4 Score=50.99 Aligned_cols=169 Identities=9% Similarity=0.134 Sum_probs=77.5
Q ss_pred EEEEEECCCCcEEEEEec--CCce-eeeeeEeCCCCEEE-EecCC-----CeEEEEECCCCeEEEeeccC--Ccccc-Cc
Q 002615 610 KIYFLDYLTGDIYWTFQT--CGEV-KCQPVVDAPRQLIW-CGSHD-----HNLYALDFRNYRCVYKLPCG--GSIFG-SP 677 (900)
Q Consensus 610 ~l~~~d~~tG~~~w~~~~--~~~~-~~~~~~~~~~~~i~-~gs~d-----g~l~~~d~~~g~~~w~~~~~--~~~~~-~~ 677 (900)
.+++||+.+++ |..-. .... ....+.. ++.|| +|+.+ ..+++||+.++ .|..... .+... +.
T Consensus 312 ~v~~yd~~~~~--W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~lp~~r~~~~~ 385 (534)
T PHA03098 312 SVVSYDTKTKS--WNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGES--KWREEPPLIFPRYNPCV 385 (534)
T ss_pred cEEEEeCCCCe--eeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCC--ceeeCCCcCcCCccceE
Confidence 58899987764 54221 1111 1122222 24454 45543 34788888765 4654221 11111 11
Q ss_pred eeeccCCEEEEEeC---C----CcEEEEEcCCCCceeeeEeecCCcce-eeeeeeeCCCEEEEEe-ec--------CcEE
Q 002615 678 AIDEVHDVLYVAST---S----GRLTAISVKALPFHTLWLHELEVPAF-ASLCITSANRHVICCL-VD--------GHVV 740 (900)
Q Consensus 678 ~~~~~~~~l~v~t~---~----g~l~~~~~~~~~g~~~w~~~~~~~~~-~s~~~~~~~~~i~~~~-~~--------g~v~ 740 (900)
+.. ++.+|+.+. + ..+..||+.+ ..|+.-...+.. ........++.+|+.+ .+ ..+.
T Consensus 386 ~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t----~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 459 (534)
T PHA03098 386 VNV--NNLIYVIGGISKNDELLKTVECFSLNT----NKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVE 459 (534)
T ss_pred EEE--CCEEEEECCcCCCCcccceEEEEeCCC----CeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEE
Confidence 222 467776432 1 3578888775 357654332211 1111222355565543 21 1278
Q ss_pred EEC-CCCCEEeeecCCCce-eccccccccCCCeEEEEee------CCeEEEEeCCCCceeeEE
Q 002615 741 ALD-SSGSIIWRCRTGGPI-FAGPCTSFALPSQVLICSR------NGSIYSFEQESGNLLWEY 795 (900)
Q Consensus 741 ~~d-~~G~~~w~~~~~~~~-~~~~~~~~~~~~~l~~g~~------dg~l~~~d~~tG~~~w~~ 795 (900)
+|| .++ .|+.-..-+. ...... ...++.||+.+. ...+++||+++. .|+.
T Consensus 460 ~yd~~~~--~W~~~~~~~~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~ 517 (534)
T PHA03098 460 SYNPVTN--KWTELSSLNFPRINASL-CIFNNKIYVVGGDKYEYYINEIEVYDDKTN--TWTL 517 (534)
T ss_pred EecCCCC--ceeeCCCCCcccccceE-EEECCEEEEEcCCcCCcccceeEEEeCCCC--EEEe
Confidence 888 544 3654321111 011111 112556665432 236788887755 4653
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=94.68 E-value=5.5 Score=40.20 Aligned_cols=193 Identities=18% Similarity=0.177 Sum_probs=93.5
Q ss_pred eeceeEecCCCEEEEE-eeCCEEEEEECCCCcEEEEEecCCce-eeeeeEeCCCCEEEEec-CCCeEEEEECCC--Ce--
Q 002615 590 ECSAAVLADFSQVVVG-CYKGKIYFLDYLTGDIYWTFQTCGEV-KCQPVVDAPRQLIWCGS-HDHNLYALDFRN--YR-- 662 (900)
Q Consensus 590 ~~~~~~~~~~~~i~vg-~~dg~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~~~~~~i~~gs-~dg~l~~~d~~~--g~-- 662 (900)
.+..++.++.+.+|+- ...+.|+.++. +|+++.++...+.- .-...+. .++.+++.+ .++.++.++... ..
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~-g~~~~vl~~Er~~~L~~~~~~~~~~~~~ 101 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYL-GNGRYVLSEERDQRLYIFTIDDDTTSLD 101 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTEEEEEEE----TT--
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEE-CCCEEEEEEcCCCcEEEEEEeccccccc
Confidence 4566777777777654 45678999994 69999888775421 1112222 334555544 367888887632 11
Q ss_pred --EEEeeccC-----CccccCceeeccCCEEEEEeCCC--cEEEEEcCCCCceeee--Eeec-----CCcceeeeeeeeC
Q 002615 663 --CVYKLPCG-----GSIFGSPAIDEVHDVLYVASTSG--RLTAISVKALPFHTLW--LHEL-----EVPAFASLCITSA 726 (900)
Q Consensus 663 --~~w~~~~~-----~~~~~~~~~~~~~~~l~v~t~~g--~l~~~~~~~~~g~~~w--~~~~-----~~~~~~s~~~~~~ 726 (900)
...++.++ +.-+=..+.+..+++++++-... .++.++.......... .... .....++..+.+.
T Consensus 102 ~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~ 181 (248)
T PF06977_consen 102 RADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPR 181 (248)
T ss_dssp EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETT
T ss_pred hhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCC
Confidence 11223322 11133456677678888887553 4566654110011111 1111 1112355566666
Q ss_pred CCEEEEEee-cCcEEEECCCCCEEeeecCCCce------eccc-cccccCCCeEEEEeeCCeEEEE
Q 002615 727 NRHVICCLV-DGHVVALDSSGSIIWRCRTGGPI------FAGP-CTSFALPSQVLICSRNGSIYSF 784 (900)
Q Consensus 727 ~~~i~~~~~-~g~v~~~d~~G~~~w~~~~~~~~------~~~~-~~~~~~~~~l~~g~~dg~l~~~ 784 (900)
.+.+|+-+. +..|..+|.+|+++-........ +..| .+..+.+|+||+.+.-+..|+|
T Consensus 182 t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 182 TGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp TTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred CCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 677766554 56677788888876444433211 1111 2345567888888877766765
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.57 E-value=1.5 Score=48.25 Aligned_cols=133 Identities=16% Similarity=0.195 Sum_probs=85.1
Q ss_pred CeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEE-eeCC--EEEEEECCCCcEEEEEecCCceeeeeeEeCCCCE
Q 002615 567 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVG-CYKG--KIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL 643 (900)
Q Consensus 567 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg-~~dg--~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 643 (900)
..++.+|.++|+..-.....+ ....+.+++|+.+|+.. +.|| .||.+|..++. +++......+-..|.+.+++..
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g-~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ 295 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNG-NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSK 295 (425)
T ss_pred ceEEEEeccCCccceeeccCC-ccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCE
Confidence 458889999887654443332 23467888988876554 4444 58999976665 5665555566668888888888
Q ss_pred EEEecCCC---eEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCC-Cc--EEEEEcCC
Q 002615 644 IWCGSHDH---NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS-GR--LTAISVKA 702 (900)
Q Consensus 644 i~~gs~dg---~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~-g~--l~~~~~~~ 702 (900)
|+..++.+ .||.+|.+.+... +....+.-.+.|...+++..+.+.+.. |. +..+++.+
T Consensus 296 ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 296 IVFTSDRGGRPQIYLYDLEGSQVT-RLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred EEEEeCCCCCcceEEECCCCCcee-EeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence 77766543 4888898877653 333333334477777777777666643 33 44455544
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=94.56 E-value=10 Score=43.23 Aligned_cols=129 Identities=7% Similarity=0.008 Sum_probs=73.9
Q ss_pred CCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeec----CcEEEEC-CCCCEEeeecCCCceeccccccc
Q 002615 692 SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVD----GHVVALD-SSGSIIWRCRTGGPIFAGPCTSF 766 (900)
Q Consensus 692 ~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~----g~v~~~d-~~G~~~w~~~~~~~~~~~~~~~~ 766 (900)
.+.+.++|.++ .+..|+....... ....+..+++.+|+.+++ ..+..++ .+...+..+....-. . ..
T Consensus 214 ~~~vSvID~et--meV~~qV~Vdgnp-d~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~ie---a--~v 285 (635)
T PRK02888 214 RSLFTAVDAET--MEVAWQVMVDGNL-DNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIE---E--AV 285 (635)
T ss_pred eEEEEEEECcc--ceEEEEEEeCCCc-ccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHH---H--hh
Confidence 45677888776 8899998876643 233455578888888643 2334444 222222222211100 0 01
Q ss_pred cCCCeEEEEeeCCeEEEEeCCC----C-ceeeEEecCCceecccccccccccccccccCCCeEEEEEcC-CCcEEEEEee
Q 002615 767 ALPSQVLICSRNGSIYSFEQES----G-NLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTS-SGSIHILRVN 840 (900)
Q Consensus 767 ~~~~~l~~g~~dg~l~~~d~~t----G-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~G~v~~~d~~ 840 (900)
..+...+++ ++.|-.+|..+ + +++..+.++.......+ .+++.+++++.. ++.+-++|..
T Consensus 286 kdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~v------------SPDGkylyVanklS~tVSVIDv~ 351 (635)
T PRK02888 286 KAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNT------------SPDGKYFIANGKLSPTVTVIDVR 351 (635)
T ss_pred hCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCCCccceEE------------CCCCCEEEEeCCCCCcEEEEECh
Confidence 123355553 56799999888 3 56666666554433222 223677776654 7889999987
Q ss_pred cC
Q 002615 841 LD 842 (900)
Q Consensus 841 ~~ 842 (900)
+.
T Consensus 352 k~ 353 (635)
T PRK02888 352 KL 353 (635)
T ss_pred hh
Confidence 54
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=94.54 E-value=1.9 Score=42.00 Aligned_cols=128 Identities=15% Similarity=0.132 Sum_probs=78.8
Q ss_pred CceEEEEecCCCeEEEEECCCCcEEEEEecCCc-eeeceeEecCCCEEEE--EeeCCEEEEEECCCCcEEEEEecCCcee
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR-IECSAAVLADFSQVVV--GCYKGKIYFLDYLTGDIYWTFQTCGEVK 632 (900)
Q Consensus 556 ~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~~~~~~i~v--g~~dg~l~~~d~~tG~~~w~~~~~~~~~ 632 (900)
..+..|.|. ..|+.++..+... -...+... .......++++..+++ |..+..+..||.+ ++.+..+.. ...
T Consensus 30 ~~~ks~~~~--~~l~~~~~~~~~~-~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~--~~~ 103 (194)
T PF08662_consen 30 KSGKSYYGE--FELFYLNEKNIPV-ESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGT--QPR 103 (194)
T ss_pred cCcceEEee--EEEEEEecCCCcc-ceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecC--CCc
Confidence 444555543 3477777665433 23333221 2346778888887544 4456789999975 777766643 222
Q ss_pred eeeeEeCCCCEEEEecC---CCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeC
Q 002615 633 CQPVVDAPRQLIWCGSH---DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST 691 (900)
Q Consensus 633 ~~~~~~~~~~~i~~gs~---dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~ 691 (900)
-...+++.+..+++++. .|.|..||.++.+.+-+..... ......++++..+..++.
T Consensus 104 n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~--~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 104 NTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD--ATDVEWSPDGRYLATATT 163 (194)
T ss_pred eEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc--EEEEEEcCCCCEEEEEEe
Confidence 34567777788887653 4679999999888886655433 344455665666666654
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=94.52 E-value=9.4 Score=42.17 Aligned_cols=185 Identities=12% Similarity=0.158 Sum_probs=93.5
Q ss_pred ccceEEeeCCceEEEEecCCC-eEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEE
Q 002615 547 ASPLVVLKDSDIYLFVGSHSH-KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTF 625 (900)
Q Consensus 547 ~sp~v~~~~~~~~v~igs~~g-~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~ 625 (900)
+.|+.+..+....+-.++... .|..|+.. |+.+++............++.+. .+++-..||.++.+|.. |+. ++
T Consensus 40 gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~-G~~--~f 114 (410)
T PF04841_consen 40 GGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF-GEF--QF 114 (410)
T ss_pred CceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC-Cce--ee
Confidence 345655555444443344433 48888764 88888876654333456676654 56666789999999965 666 55
Q ss_pred ecCCceeeeee--------EeCCCCEEEEecCCCeEEEEECCCCeEEEee--ccCCcc---------ccCceeeccCCEE
Q 002615 626 QTCGEVKCQPV--------VDAPRQLIWCGSHDHNLYALDFRNYRCVYKL--PCGGSI---------FGSPAIDEVHDVL 686 (900)
Q Consensus 626 ~~~~~~~~~~~--------~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~--~~~~~~---------~~~~~~~~~~~~l 686 (900)
..+..+....+ .....|. ++-+.++.+|.++-......++. ...+.. ...+.+.......
T Consensus 115 sl~~~i~~~~v~e~~i~~~~~~~~Gi-vvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~ 193 (410)
T PF04841_consen 115 SLGEEIEEEKVLECRIFAIWFYKNGI-VVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVE 193 (410)
T ss_pred chhhhccccCcccccccccccCCCCE-EEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceE
Confidence 55443322211 1122443 33455677888765443323221 111110 0011122222333
Q ss_pred EEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC
Q 002615 687 YVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD 743 (900)
Q Consensus 687 ~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d 743 (900)
+....++.++.++... .+. ... ...+...+++++++.+.+-+.+|.+.+.+
T Consensus 194 i~~~~g~~i~~i~~~~--~~~---i~~-~~~i~~iavSpng~~iAl~t~~g~l~v~s 244 (410)
T PF04841_consen 194 ILLANGETIYIIDENS--FKQ---IDS-DGPIIKIAVSPNGKFIALFTDSGNLWVVS 244 (410)
T ss_pred EEEecCCEEEEEEccc--ccc---ccC-CCCeEEEEECCCCCEEEEEECCCCEEEEE
Confidence 3334445555555332 111 111 11234555666666676666677776666
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.49 Score=50.28 Aligned_cols=278 Identities=13% Similarity=0.079 Sum_probs=139.6
Q ss_pred EeeCCceEEEEecCCCeEEEEECCCCcEEEEEecCCce-eeceeEe--cCCCEEEEEeeCCEEEEEE-CCCCcEEEEE--
Q 002615 552 VLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRI-ECSAAVL--ADFSQVVVGCYKGKIYFLD-YLTGDIYWTF-- 625 (900)
Q Consensus 552 ~~~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~--~~~~~i~vg~~dg~l~~~d-~~tG~~~w~~-- 625 (900)
.+...+..+..||.+-.+..||-.+++..-.+..+... +...-+. .+...|+..+.||.+..=. ..+|.+..+.
T Consensus 149 ~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl 228 (559)
T KOG1334|consen 149 HFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRL 228 (559)
T ss_pred eecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceec
Confidence 34556778888999999999999888877666544321 1111121 2223455556666553221 1445443221
Q ss_pred -ecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccC---Cc---cccCceeecc-CCEEEEEeCCCcEEE
Q 002615 626 -QTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG---GS---IFGSPAIDEV-HDVLYVASTSGRLTA 697 (900)
Q Consensus 626 -~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~---~~---~~~~~~~~~~-~~~l~v~t~~g~l~~ 697 (900)
+..+.+....+...+...++..+.|+.+.-+|+..+.+.-++.+. .. -..+.++++. .+.+.++..+..+..
T Consensus 229 ~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~Rv 308 (559)
T KOG1334|consen 229 APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARV 308 (559)
T ss_pred ccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhh
Confidence 222333333333334456788888999999998876554333331 11 1122222221 234555555666666
Q ss_pred EEcCCCCce----eeeEeec-----CCcce-eeeeeeeCCCEEEEEeecCcEEEEC---CCCCEE----------ee-ec
Q 002615 698 ISVKALPFH----TLWLHEL-----EVPAF-ASLCITSANRHVICCLVDGHVVALD---SSGSII----------WR-CR 753 (900)
Q Consensus 698 ~~~~~~~g~----~~w~~~~-----~~~~~-~s~~~~~~~~~i~~~~~~g~v~~~d---~~G~~~----------w~-~~ 753 (900)
||......+ .+-++-. ..+.. ...+...+++.+.+.-.+-.+|.|+ ..|... -+ ++
T Consensus 309 YD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYK 388 (559)
T KOG1334|consen 309 YDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYK 388 (559)
T ss_pred hcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhc
Confidence 664321111 0111100 01111 1222333455566665667788887 244111 01 11
Q ss_pred CCCceecccccccc--CCCeEEEEeeCCeEEEEeCCCCceeeEEecCCceecccccccccccccccccCCCeEEEEEcCC
Q 002615 754 TGGPIFAGPCTSFA--LPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSS 831 (900)
Q Consensus 754 ~~~~~~~~~~~~~~--~~~~l~~g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~ 831 (900)
...+--....+.+. ....+..|+.=|+|+.|+.++|+++-.+.....++...- +.+....++..+-+
T Consensus 389 GHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLE-----------pHP~~PvLAsSGid 457 (559)
T KOG1334|consen 389 GHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLE-----------PHPHLPVLASSGID 457 (559)
T ss_pred ccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccC-----------CCCCCchhhccCCc
Confidence 00000001111111 245788888889999999999998765544433322211 11224456666667
Q ss_pred CcEEEEEee
Q 002615 832 GSIHILRVN 840 (900)
Q Consensus 832 G~v~~~d~~ 840 (900)
-.|.+|-+.
T Consensus 458 ~DVKIWTP~ 466 (559)
T KOG1334|consen 458 HDVKIWTPL 466 (559)
T ss_pred cceeeecCC
Confidence 778888664
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.65 Score=54.41 Aligned_cols=131 Identities=18% Similarity=0.172 Sum_probs=80.2
Q ss_pred CCCeEEEEECCCCcEEEEEecCCce-eeceeEec-----CCCEEEEEeeCCEEEEEECCC-C-cEEEE----EecCCcee
Q 002615 565 HSHKFICADAKRSSVLWEIKLEGRI-ECSAAVLA-----DFSQVVVGCYKGKIYFLDYLT-G-DIYWT----FQTCGEVK 632 (900)
Q Consensus 565 ~~g~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~~-----~~~~i~vg~~dg~l~~~d~~t-G-~~~w~----~~~~~~~~ 632 (900)
+...||.+|+.+|+++-+...+..+ ....+... .....++|-.+..|++||++- | +++|. +.......
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 5678999999999997665555433 11111110 124688999899999999875 3 35552 22222222
Q ss_pred eeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeecc---CCccccCceeeccCCEEEEEeCCCcEEEEEcC
Q 002615 633 CQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC---GGSIFGSPAIDEVHDVLYVASTSGRLTAISVK 701 (900)
Q Consensus 633 ~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~---~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~ 701 (900)
.+....+|.|.+|+.+|.|..||. .|+. -+..+ +.++.. ..+.. +|.-+++|..-.|..++..
T Consensus 582 --~~aTt~~G~iavgs~~G~IRLyd~-~g~~-AKT~lp~lG~pI~~-iDvt~-DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 582 --CFATTEDGYIAVGSNKGDIRLYDR-LGKR-AKTALPGLGDPIIG-IDVTA-DGKWILATCKTYLLLIDTL 647 (794)
T ss_pred --EEEecCCceEEEEeCCCcEEeecc-cchh-hhhcCCCCCCCeeE-EEecC-CCcEEEEeecceEEEEEEe
Confidence 233445799999999999999994 3422 22222 223333 33333 3666677777778888753
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PRK08172 putative acyl carrier protein IacP; Validated | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.12 Score=41.89 Aligned_cols=66 Identities=9% Similarity=0.141 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcccCC--cccccCCCc-cccCcchHHHHHHHHHh------CCCchhhhcCCCHHHHHHHHHhhc
Q 002615 360 DLLQVIRKAFGHALMV--EEVLHHDNF-FTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 425 (900)
Q Consensus 360 ~~~~~~~~~~~~~l~~--~~i~~~~~F-f~lGgdSl~a~~l~~~l------~~~~~~~~~~~t~~~l~~~l~~~~ 425 (900)
++.+.+++++++.|++ ..+..+.+| =++|-|||..+.|...| .++...+.+..|+..+..++..+.
T Consensus 4 ~i~~~v~~iiae~l~v~~~~i~~d~~l~~dL~~DSld~v~lv~~lEe~F~I~i~~~d~~~i~Tv~di~~~v~~~~ 78 (82)
T PRK08172 4 DIEARVKKVITSCIAVDVDSINGQTHLVEDLYADSLDLIDIVFGLSEEFDISCNENDLPDMTTFADICRVVKKSL 78 (82)
T ss_pred cHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHCCCHHHHHHHHHHHH
Confidence 5677889999999877 468999999 56999999999987655 467778899999999999998754
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=1.9 Score=49.84 Aligned_cols=130 Identities=15% Similarity=0.188 Sum_probs=63.7
Q ss_pred eEEEEECCCCcEEEEEecC---CceeeceeEecCCCEEE-EEeeC-----CEEEEEECCCCcEEEEEecC--Cce-eeee
Q 002615 568 KFICADAKRSSVLWEIKLE---GRIECSAAVLADFSQVV-VGCYK-----GKIYFLDYLTGDIYWTFQTC--GEV-KCQP 635 (900)
Q Consensus 568 ~l~~~d~~tG~~~w~~~~~---~~~~~~~~~~~~~~~i~-vg~~d-----g~l~~~d~~tG~~~w~~~~~--~~~-~~~~ 635 (900)
.+++||..+++ |..... .+...+.+ ..+ +.|| +|+.+ ..+++||+.++ .|+.... ... ..+.
T Consensus 312 ~v~~yd~~~~~--W~~~~~~~~~R~~~~~~-~~~-~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~lp~~r~~~~~ 385 (534)
T PHA03098 312 SVVSYDTKTKS--WNKVPELIYPRKNPGVT-VFN-NRIYVIGGIYNSISLNTVESWKPGES--KWREEPPLIFPRYNPCV 385 (534)
T ss_pred cEEEEeCCCCe--eeECCCCCcccccceEE-EEC-CEEEEEeCCCCCEecceEEEEcCCCC--ceeeCCCcCcCCccceE
Confidence 58899998766 753221 12222222 233 3455 45443 35888998765 4764221 111 1111
Q ss_pred eEeCCCCEEEE-ecC--C----CeEEEEECCCCeEEEeeccC--CccccCceeeccCCEEEEEe-CC--------CcEEE
Q 002615 636 VVDAPRQLIWC-GSH--D----HNLYALDFRNYRCVYKLPCG--GSIFGSPAIDEVHDVLYVAS-TS--------GRLTA 697 (900)
Q Consensus 636 ~~~~~~~~i~~-gs~--d----g~l~~~d~~~g~~~w~~~~~--~~~~~~~~~~~~~~~l~v~t-~~--------g~l~~ 697 (900)
+.. ++.||+ |+. + ..+++||+.+++ |..... .......+... ++.||+.+ .+ ..+++
T Consensus 386 ~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~ 460 (534)
T PHA03098 386 VNV--NNLIYVIGGISKNDELLKTVECFSLNTNK--WSKGSPLPISHYGGCAIYH-DGKIYVIGGISYIDNIKVYNIVES 460 (534)
T ss_pred EEE--CCEEEEECCcCCCCcccceEEEEeCCCCe--eeecCCCCccccCceEEEE-CCEEEEECCccCCCCCcccceEEE
Confidence 222 355665 432 1 358899988754 654221 11111122222 36666643 21 13788
Q ss_pred EEcCCCCceeeeEee
Q 002615 698 ISVKALPFHTLWLHE 712 (900)
Q Consensus 698 ~~~~~~~g~~~w~~~ 712 (900)
||+.+ ..|+.-
T Consensus 461 yd~~~----~~W~~~ 471 (534)
T PHA03098 461 YNPVT----NKWTEL 471 (534)
T ss_pred ecCCC----CceeeC
Confidence 88775 357653
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.18 E-value=4.1 Score=46.94 Aligned_cols=196 Identities=13% Similarity=0.076 Sum_probs=93.8
Q ss_pred eCCceEEEEecCCCeEEEEECCCCcEEEEEec-CCceeeceeEecCCCEEEEEeeC-C----EEEEEECCCC---c-E--
Q 002615 554 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKL-EGRIECSAAVLADFSQVVVGCYK-G----KIYFLDYLTG---D-I-- 621 (900)
Q Consensus 554 ~~~~~~v~igs~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~i~vg~~d-g----~l~~~d~~tG---~-~-- 621 (900)
....+.|++|+.+|.|..+|.. =+....+.. ...+....-..++...++.-..| + .|..||++.- . +
T Consensus 32 ~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c 110 (933)
T KOG2114|consen 32 SSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQC 110 (933)
T ss_pred cCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcce
Confidence 3457889999999999998843 222222222 12222222222332344433333 2 4566664321 1 1
Q ss_pred E---EEEe----cCCceeeeeeEeCCCCEEEEecCCCeEEEEECC----CCe-EEEeeccCCccccCceeeccCCE-EEE
Q 002615 622 Y---WTFQ----TCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFR----NYR-CVYKLPCGGSIFGSPAIDEVHDV-LYV 688 (900)
Q Consensus 622 ~---w~~~----~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~----~g~-~~w~~~~~~~~~~~~~~~~~~~~-l~v 688 (900)
. -.+. +.....++.++..+-..|++|-.+|.|+++.-+ .|. ........+++. ...+..++.. +++
T Consensus 111 ~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pIT-gL~~~~d~~s~lFv 189 (933)
T KOG2114|consen 111 LYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPIT-GLALRSDGKSVLFV 189 (933)
T ss_pred eeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCce-eeEEecCCceeEEE
Confidence 1 1111 123344556666667789999999999998421 121 111122223333 3333332333 677
Q ss_pred EeCCCcEEEEEcCCCCceeeeE-eecCCcceeeeeeeeCCCEEEEEeecCcEEEECCCC-CEEeeecCC
Q 002615 689 ASTSGRLTAISVKALPFHTLWL-HELEVPAFASLCITSANRHVICCLVDGHVVALDSSG-SIIWRCRTG 755 (900)
Q Consensus 689 ~t~~g~l~~~~~~~~~g~~~w~-~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d~~G-~~~w~~~~~ 755 (900)
+|... +..|.+... + +.-. .+..+-............. ++++.+..++.|+.+| .+-|.+..+
T Consensus 190 ~Tt~~-V~~y~l~gr-~-p~~~~ld~~G~~lnCss~~~~t~q-fIca~~e~l~fY~sd~~~~cfaf~~g 254 (933)
T KOG2114|consen 190 ATTEQ-VMLYSLSGR-T-PSLKVLDNNGISLNCSSFSDGTYQ-FICAGSEFLYFYDSDGRGPCFAFEVG 254 (933)
T ss_pred Eecce-eEEEEecCC-C-cceeeeccCCccceeeecCCCCcc-EEEecCceEEEEcCCCcceeeeecCC
Confidence 77654 777776631 1 2222 2222221112222211222 3344456788888444 344666543
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=94.02 E-value=13 Score=41.90 Aligned_cols=62 Identities=16% Similarity=0.197 Sum_probs=37.1
Q ss_pred EEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCe
Q 002615 601 QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR 662 (900)
Q Consensus 601 ~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~ 662 (900)
.+++|..||.|..|..+.......+..++..+....+.+....+.+.+.|+.++.||.+.-+
T Consensus 71 ~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e 132 (764)
T KOG1063|consen 71 EMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDE 132 (764)
T ss_pred eEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCc
Confidence 68999999988888877444444444444222222233222222233578999999986555
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.84 Score=47.47 Aligned_cols=80 Identities=16% Similarity=0.149 Sum_probs=52.5
Q ss_pred ccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEEe
Q 002615 672 SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIW 750 (900)
Q Consensus 672 ~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~w 750 (900)
.+....++.+++..|+.+..+..|.+..... --.+-.+-.+...|.+.....++..++.++.|++++.|| .+|+.+.
T Consensus 152 Sml~dVavS~D~~~IitaDRDEkIRvs~ypa--~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 152 SMLLDVAVSPDDQFIITADRDEKIRVSRYPA--TFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLD 229 (390)
T ss_pred hhhheeeecCCCCEEEEecCCceEEEEecCc--ccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCCccc
Confidence 4455566677677888888888888766543 122333334333343333334556689999999999999 9999885
Q ss_pred eec
Q 002615 751 RCR 753 (900)
Q Consensus 751 ~~~ 753 (900)
.+.
T Consensus 230 t~d 232 (390)
T KOG3914|consen 230 TCD 232 (390)
T ss_pred ccc
Confidence 554
|
|
| >KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.29 Score=56.04 Aligned_cols=186 Identities=15% Similarity=0.233 Sum_probs=102.9
Q ss_pred ceEEEEecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcEEE--EEecCCceeee
Q 002615 557 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYW--TFQTCGEVKCQ 634 (900)
Q Consensus 557 ~~~v~igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w--~~~~~~~~~~~ 634 (900)
...+++.+-| .+.+.+..+|.+.|...-..-+. ++.-... --..-+-.+|.+|.+-- +.-+. .+.....+..+
T Consensus 27 e~~~~~stid-~l~a~s~~~g~~~~~l~~~pvv~-~~~~~~~-~~fl~~p~dgsly~l~~--~~sL~Klpftipelv~~~ 101 (903)
T KOG1027|consen 27 ENLLLVSTID-SLHAPSSETGFIKWTLSDDPVVA-SPDGVLQ-PAFLPDPRDGSLYTLGN--NLSLTKLPFTIPELVNAS 101 (903)
T ss_pred cccccccccc-cccCccccccceeeeeccCcccc-CCccccc-cccCCCccccceeeccC--CCccccCCccchhhhccC
Confidence 3556666667 68888889999999865332111 1110000 00111234566665432 22222 23333344445
Q ss_pred eeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecC
Q 002615 635 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE 714 (900)
Q Consensus 635 ~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~ 714 (900)
|+-. .+|.+|+|+.++..|.+|+++|+..|.++...++ ...+|.+-.+.++..+|.++ -...|.....
T Consensus 102 pcrs-sdGi~ysg~k~d~~~lvD~~tg~~~~tf~~~~~~---------~~~v~~grt~ytv~m~d~~~--~~~~wn~t~~ 169 (903)
T KOG1027|consen 102 PCRS-SDGILYSGSKQDIWYLVDPKTGEIDYTFNTAEPI---------KQLVYLGRTNYTVTMYDKNV--RGKTWNTTFG 169 (903)
T ss_pred cccC-CCCeEEecccccceEEecCCccceeEEEecCCcc---------hhheecccceeEEecccCcc--cCceeecccc
Confidence 5444 5799999999999999999999999998876632 24556665555566666444 3344544333
Q ss_pred CcceeeeeeeeCCCE-EEEEeecCcEEEEC-CCCCEEeeecCCCcee
Q 002615 715 VPAFASLCITSANRH-VICCLVDGHVVALD-SSGSIIWRCRTGGPIF 759 (900)
Q Consensus 715 ~~~~~s~~~~~~~~~-i~~~~~~g~v~~~d-~~G~~~w~~~~~~~~~ 759 (900)
......+.......+ -+..+.+|.+..+| ..|+.+|.-+...+++
T Consensus 170 dy~a~~~~~~~~~~~~~~~~~~~g~i~t~D~~~g~~~~~q~~~spvv 216 (903)
T KOG1027|consen 170 DYSAQYPSGVRGEKMSHFHSLGNGYIVTVDSESGEKLWLQDLLSPVV 216 (903)
T ss_pred chhccCCCccCCceeEEEeecCCccEEeccCcccceeeccccCCceE
Confidence 211111111111111 12222367788889 8899999877655544
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.95 Score=53.10 Aligned_cols=142 Identities=13% Similarity=0.170 Sum_probs=84.9
Q ss_pred CCEEEEe-cCCCeEEEEECCCCeEEEeeccCCcc--cc-Ccee---eccCCEEEEEeCCCcEEEEEcCCCCceeeeEee-
Q 002615 641 RQLIWCG-SHDHNLYALDFRNYRCVYKLPCGGSI--FG-SPAI---DEVHDVLYVASTSGRLTAISVKALPFHTLWLHE- 712 (900)
Q Consensus 641 ~~~i~~g-s~dg~l~~~d~~~g~~~w~~~~~~~~--~~-~~~~---~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~- 712 (900)
...|+.. .....||.+|++.|+++-.++.+..+ .. .|.. .-.+...++|-.+..|+.+|++-...+++|...
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444443 35678999999999998555554322 11 1110 001356788888889999999864334555321
Q ss_pred --cCCcceeeeeeeeCCCEEEEEeecCcEEEECCCCCEEe-eec-CCCceeccccccccCCCeEEEEeeCCeEEEEeC
Q 002615 713 --LEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIW-RCR-TGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQ 786 (900)
Q Consensus 713 --~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d~~G~~~w-~~~-~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~ 786 (900)
.....|++ .....+|.|.+|+.+|.|..||..|+..- .++ .+.||.... ...+|.-+++|-+-.|..++.
T Consensus 573 ~Y~~~~~Fs~-~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iD---vt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 573 QYSSKNNFSC-FATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGID---VTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred ccccCCCceE-EEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEE---ecCCCcEEEEeecceEEEEEE
Confidence 12333443 34456899999999999999996564311 111 233444332 334666666666677777764
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.75 E-value=7.1 Score=37.92 Aligned_cols=41 Identities=17% Similarity=0.373 Sum_probs=32.5
Q ss_pred ccCCCeEEEEeeC-CeEEEEeCCCCceeeEEecCCceecccc
Q 002615 766 FALPSQVLICSRN-GSIYSFEQESGNLLWEYSVGDPITASAY 806 (900)
Q Consensus 766 ~~~~~~l~~g~~d-g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 806 (900)
.+.+|+||+++.+ |.|+.+|+.||+++-++.++.+-+++.+
T Consensus 219 ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitscc 260 (310)
T KOG4499|consen 219 IDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCC 260 (310)
T ss_pred EccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEE
Confidence 4568899999875 5799999999999999888866544433
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.72 Score=46.91 Aligned_cols=147 Identities=13% Similarity=0.225 Sum_probs=90.0
Q ss_pred EecCCCeEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCCEEEEEECCCCcE--EE---EEecCCceeeeee
Q 002615 562 VGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDI--YW---TFQTCGEVKCQPV 636 (900)
Q Consensus 562 igs~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~--~w---~~~~~~~~~~~~~ 636 (900)
+|... .+...|..||-... +.....+ .+.-+...++.++.||.+|.|+.+|+..+.. .| .+-.+..+.+.-+
T Consensus 230 ~G~sq-qv~L~nvetg~~qs-f~sksDV-fAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~ 306 (425)
T KOG2695|consen 230 VGLSQ-QVLLTNVETGHQQS-FQSKSDV-FALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQI 306 (425)
T ss_pred ccccc-eeEEEEeecccccc-cccchhH-HHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhh
Confidence 34434 47778888876442 3333222 1334445457899999999999999887522 23 3333445544444
Q ss_pred EeCCCCEEEEecCCCeEEEEECCCCeE---EEeeccCCcc--ccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEe
Q 002615 637 VDAPRQLIWCGSHDHNLYALDFRNYRC---VYKLPCGGSI--FGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLH 711 (900)
Q Consensus 637 ~~~~~~~i~~gs~dg~l~~~d~~~g~~---~w~~~~~~~~--~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~ 711 (900)
+.-++..+.+.+.+|.|..||..--++ +..+..+.+. ....-+.+.++.|+.+..|-....|.++. |..+-+.
T Consensus 307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~--ghLl~ti 384 (425)
T KOG2695|consen 307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS--GHLLCTI 384 (425)
T ss_pred hccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEeccc--Cceeecc
Confidence 443567788888899999999865444 4444332211 11223445567788877788777888776 7666554
Q ss_pred ec
Q 002615 712 EL 713 (900)
Q Consensus 712 ~~ 713 (900)
..
T Consensus 385 pf 386 (425)
T KOG2695|consen 385 PF 386 (425)
T ss_pred CC
Confidence 33
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.23 Score=56.17 Aligned_cols=106 Identities=11% Similarity=0.017 Sum_probs=69.8
Q ss_pred ceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCC
Q 002615 592 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG 671 (900)
Q Consensus 592 ~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~ 671 (900)
++++...+.+|+.|+.|-.+..|..+|+..+-....+..-+....+...+-.+..+|.|..|.+|-+.+|.++-....+.
T Consensus 195 ca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrght 274 (1113)
T KOG0644|consen 195 CAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHT 274 (1113)
T ss_pred eeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccc
Confidence 56777778899999999989999999988876665554444444444434446668889889999988887765544332
Q ss_pred ccccCceeeccCCEEEEEeCCCcEEEEEcC
Q 002615 672 SIFGSPAIDEVHDVLYVASTSGRLTAISVK 701 (900)
Q Consensus 672 ~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~ 701 (900)
.-..+..+.+ .. ..+.+|.+..||..
T Consensus 275 gavtaiafsP--~~--sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 275 GAVTAIAFSP--RA--SSSDDGTCRIWDAR 300 (1113)
T ss_pred cceeeeccCc--cc--cCCCCCceEecccc
Confidence 2222233332 11 34567878777754
|
|
| >PLN02247 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.52 Score=53.66 Aligned_cols=44 Identities=16% Similarity=0.367 Sum_probs=38.4
Q ss_pred EecCceEEEc----cCCcEEEEcccCCcEEECceeeChHHHHHHHhCC
Q 002615 220 FRTGDFARRI----QSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGH 263 (900)
Q Consensus 220 ~~TGDl~~~~----~~G~l~~~GR~dd~ik~~G~rv~~~~iE~~l~~~ 263 (900)
||.||+++.. ..-.+.|++|.+.+..+.|++++-.++..++.+.
T Consensus 417 YrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~a 464 (606)
T PLN02247 417 YRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQA 464 (606)
T ss_pred EecCCEEEEeeecCCCceEEEEecCCceeecccccCCHHHHHHHHHHH
Confidence 8999999974 3357999999999999999999999998888763
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.62 Score=57.65 Aligned_cols=175 Identities=13% Similarity=0.167 Sum_probs=102.0
Q ss_pred EEEEEeeCCEEEEEECCCCcEEEEEecCCcee-eeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccCCccccCcee
Q 002615 601 QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK-CQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAI 679 (900)
Q Consensus 601 ~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~-~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~ 679 (900)
+-+.|+.||.+..|.-..|+.+-.+.+.+..+ +...+...++..-++..||.|-.|... -++.-..+++..-.
T Consensus 2222 ~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~----- 2295 (2439)
T KOG1064|consen 2222 YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKAL----- 2295 (2439)
T ss_pred eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccc-----
Confidence 44567889988888877777665555544332 233344455666666777877777654 23333333332211
Q ss_pred eccCCEEEEE---------eCCCcEEEEEcCCCCceeeeEeecCCcceeeeeeeeCCCEEEEEeecCcEEEEC-CCCCEE
Q 002615 680 DEVHDVLYVA---------STSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSII 749 (900)
Q Consensus 680 ~~~~~~l~v~---------t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~~~~~g~v~~~d-~~G~~~ 749 (900)
.+..+++ +.++.+..||..-..+.-+-. .++..........+....++.|+.+|.++.|| ..-+++
T Consensus 2296 ---~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~ 2371 (2439)
T KOG1064|consen 2296 ---SDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLR 2371 (2439)
T ss_pred ---cceeeeehhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHH
Confidence 1233333 245677777755322221211 33333334445566677889999999999999 665665
Q ss_pred eeecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEEe
Q 002615 750 WRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYS 796 (900)
Q Consensus 750 w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~~ 796 (900)
.+++. .+....+..|+..|.+..|+...-.++.+++
T Consensus 2372 h~~~~-----------~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2372 HTFQA-----------LDTREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred HHhhh-----------hhhhheeeccCcccceEEEEccccchhhcCc
Confidence 44432 1134567777888888888877655555443
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=93.26 E-value=16 Score=40.55 Aligned_cols=221 Identities=13% Similarity=0.103 Sum_probs=105.9
Q ss_pred eEEEEECCCCcEEEEEecCCceeeceeEecCCCEEEEEeeCC-----------EEEEEECCCCc----EEEEEecCCcee
Q 002615 568 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKG-----------KIYFLDYLTGD----IYWTFQTCGEVK 632 (900)
Q Consensus 568 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg-----------~l~~~d~~tG~----~~w~~~~~~~~~ 632 (900)
.|+.+|..+|+.+-.. .......++...+++..+|....+. .||++...++. +++.-..+....
T Consensus 151 ~l~v~Dl~tg~~l~d~-i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~ 229 (414)
T PF02897_consen 151 TLRVFDLETGKFLPDG-IENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWF 229 (414)
T ss_dssp EEEEEETTTTEEEEEE-EEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSE
T ss_pred EEEEEECCCCcCcCCc-ccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEE
Confidence 5999999999876432 1111111267778766665554332 37888877663 333322222213
Q ss_pred eeeeEeCCCCEEEEecC---C-CeEEEEECCCC---eEEEee--ccCCccccCceeeccCCEEEEEeC----CCcEEEEE
Q 002615 633 CQPVVDAPRQLIWCGSH---D-HNLYALDFRNY---RCVYKL--PCGGSIFGSPAIDEVHDVLYVAST----SGRLTAIS 699 (900)
Q Consensus 633 ~~~~~~~~~~~i~~gs~---d-g~l~~~d~~~g---~~~w~~--~~~~~~~~~~~~~~~~~~l~v~t~----~g~l~~~~ 699 (900)
.....+.++..+++.+. + ..+|.+|..++ ...|+. .-....... +...++.+|+-|. ++.|+.++
T Consensus 230 ~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~--v~~~~~~~yi~Tn~~a~~~~l~~~~ 307 (414)
T PF02897_consen 230 VSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY--VDHHGDRLYILTNDDAPNGRLVAVD 307 (414)
T ss_dssp EEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE--EEEETTEEEEEE-TT-TT-EEEEEE
T ss_pred EEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE--EEccCCEEEEeeCCCCCCcEEEEec
Confidence 33445556677666422 2 45888888775 222221 111111111 2222577888764 46888888
Q ss_pred cCCCCceeeeEee-cC-CcceeeeeeeeCCCEEEEEeecC---cEEEECCC-CCEEeeecCCCceeccccccccCCCeEE
Q 002615 700 VKALPFHTLWLHE-LE-VPAFASLCITSANRHVICCLVDG---HVVALDSS-GSIIWRCRTGGPIFAGPCTSFALPSQVL 773 (900)
Q Consensus 700 ~~~~~g~~~w~~~-~~-~~~~~s~~~~~~~~~i~~~~~~g---~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~~~~~~l~ 773 (900)
+++..- .-|... .. .....-..+...++.+++....+ .|.+++.. +.......................+.++
T Consensus 308 l~~~~~-~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~ 386 (414)
T PF02897_consen 308 LADPSP-AEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELR 386 (414)
T ss_dssp TTSTSG-GGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEE
T ss_pred cccccc-ccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEE
Confidence 876221 124321 11 11111112222355555554333 45666744 5555554433221101101122344555
Q ss_pred EEee----CCeEEEEeCCCCcee
Q 002615 774 ICSR----NGSIYSFEQESGNLL 792 (900)
Q Consensus 774 ~g~~----dg~l~~~d~~tG~~~ 792 (900)
+.-. -+.+|.+|.++|+..
T Consensus 387 ~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 387 FSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEETTEEEEEEEEETTTTCEE
T ss_pred EEEeCCCCCCEEEEEECCCCCEE
Confidence 5432 357999999999863
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=93.20 E-value=15 Score=40.08 Aligned_cols=134 Identities=12% Similarity=0.150 Sum_probs=66.6
Q ss_pred CEEEEEeecCcEEEECCCCCEEeeecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCce----eeEE-ecCC---
Q 002615 728 RHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNL----LWEY-SVGD--- 799 (900)
Q Consensus 728 ~~i~~~~~~g~v~~~d~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~----~w~~-~~~~--- 799 (900)
+.+++.+..|.++.-...|...|+............+....++.+|+.+.+|.++.-+ ..|+. .|.. ....
T Consensus 250 G~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~-d~G~~~~~~~f~~~~~~~~~~ 328 (398)
T PLN00033 250 GDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSK-GTGLTEEDFDFEEADIKSRGF 328 (398)
T ss_pred CCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEec-CCCCcccccceeecccCCCCc
Confidence 4444444455555544556655653221111111112234567889888888877654 44531 2221 1111
Q ss_pred ceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecCcccccccccccceeeeeeec----cCCccccCce-ee
Q 002615 800 PITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLE----LQGDIFSSPV-MI 874 (900)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~ss~~-~~ 874 (900)
.++...+. +++.+|+++.+|.++... ..| +.|.... .+.+.. ... ..
T Consensus 329 ~l~~v~~~-------------~d~~~~a~G~~G~v~~s~-D~G-------------~tW~~~~~~~~~~~~ly-~v~f~~ 380 (398)
T PLN00033 329 GILDVGYR-------------SKKEAWAAGGSGILLRST-DGG-------------KSWKRDKGADNIAANLY-SVKFFD 380 (398)
T ss_pred ceEEEEEc-------------CCCcEEEEECCCcEEEeC-CCC-------------cceeEccccCCCCccee-EEEEcC
Confidence 11111111 266778888888666553 222 3333322 222222 222 34
Q ss_pred CCEEEEeeeCCeEEEE
Q 002615 875 GGRVFVGCRDDYIYCI 890 (900)
Q Consensus 875 ~~~l~vg~~dg~l~~l 890 (900)
+++.|+...+|.|..+
T Consensus 381 ~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 381 DKKGFVLGNDGVLLRY 396 (398)
T ss_pred CCceEEEeCCcEEEEe
Confidence 5899999999988766
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.65 Score=50.06 Aligned_cols=90 Identities=16% Similarity=0.060 Sum_probs=66.0
Q ss_pred eceeEecCCCEEEEEeeCCEEEEEECCCCcEEEEEecCCceeeeeeEeCCCCEEEEecCCCeEEEEECCCCeEEEeeccC
Q 002615 591 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG 670 (900)
Q Consensus 591 ~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~l~~~d~~~g~~~w~~~~~ 670 (900)
...++++|+.++.+-+.||.|..||..+-+++-.++.--.-..+..+.+++.+|++|..|.-|.+|....++++-+-+.+
T Consensus 294 n~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGH 373 (636)
T KOG2394|consen 294 NEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGH 373 (636)
T ss_pred cceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccc
Confidence 35678899999999999999999998876664322211111234567889999999999999999999988888665555
Q ss_pred CccccCceee
Q 002615 671 GSIFGSPAID 680 (900)
Q Consensus 671 ~~~~~~~~~~ 680 (900)
....+..+++
T Consensus 374 kSWVs~VaFD 383 (636)
T KOG2394|consen 374 KSWVSVVAFD 383 (636)
T ss_pred ccceeeEeec
Confidence 5555555554
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.14 E-value=14 Score=39.53 Aligned_cols=217 Identities=12% Similarity=0.114 Sum_probs=96.7
Q ss_pred EEEecCCCeEEEEECCCCeEEEeecc-----CCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCceeeeEeecCCc--
Q 002615 644 IWCGSHDHNLYALDFRNYRCVYKLPC-----GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVP-- 716 (900)
Q Consensus 644 i~~gs~dg~l~~~d~~~g~~~w~~~~-----~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~-- 716 (900)
.|+....+.|+. ..++-.-|+... .+..+....+. .+.+++.+..|.++.-+ + +-..|+......
T Consensus 102 ~~~~G~~g~i~~--S~DgG~tW~~~~~~~~~~~~~~~i~~~~--~~~~~~~g~~G~i~~S~--D--gG~tW~~~~~~~~g 173 (334)
T PRK13684 102 GWIVGQPSLLLH--TTDGGKNWTRIPLSEKLPGSPYLITALG--PGTAEMATNVGAIYRTT--D--GGKNWEALVEDAAG 173 (334)
T ss_pred EEEeCCCceEEE--ECCCCCCCeEccCCcCCCCCceEEEEEC--CCcceeeeccceEEEEC--C--CCCCceeCcCCCcc
Confidence 455545555554 344555565432 12222211122 34566666677665432 2 556777533211
Q ss_pred ceeeeeeeeCCCEEEEEeecCcEEEECCCCCEEeeecCCCceeccccccccCCCeEEEEeeCCeEEEEeCCCCceeeEE-
Q 002615 717 AFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEY- 795 (900)
Q Consensus 717 ~~~s~~~~~~~~~i~~~~~~g~v~~~d~~G~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~l~~~d~~tG~~~w~~- 795 (900)
.+....... ++.+++.+..|.++.-..+|...|+............+....++.+|+....|.++ +...++-..|+.
T Consensus 174 ~~~~i~~~~-~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~-~~s~d~G~sW~~~ 251 (334)
T PRK13684 174 VVRNLRRSP-DGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIR-FNDPDDLESWSKP 251 (334)
T ss_pred eEEEEEECC-CCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEE-EccCCCCCccccc
Confidence 122233333 34455555566666543344445654322111111111233456777777777554 422334456763
Q ss_pred ecCCceecccccccccccccccccCCCeEEEEEcCCCcEEEEEeecCcccccccccccceeeeeeec----cCCccccCc
Q 002615 796 SVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLE----LQGDIFSSP 871 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~G~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~ss~ 871 (900)
..+.......+.. .... .++.+|++..+|.++.- .+.| +.|.... ++.......
T Consensus 252 ~~~~~~~~~~l~~-------v~~~-~~~~~~~~G~~G~v~~S-~d~G-------------~tW~~~~~~~~~~~~~~~~~ 309 (334)
T PRK13684 252 IIPEITNGYGYLD-------LAYR-TPGEIWAGGGNGTLLVS-KDGG-------------KTWEKDPVGEEVPSNFYKIV 309 (334)
T ss_pred cCCccccccceee-------EEEc-CCCCEEEEcCCCeEEEe-CCCC-------------CCCeECCcCCCCCcceEEEE
Confidence 2211100000000 0001 14457777778866532 2222 2222221 111122222
Q ss_pred eeeCCEEEEeeeCCeEEEEEc
Q 002615 872 VMIGGRVFVGCRDDYIYCIAL 892 (900)
Q Consensus 872 ~~~~~~l~vg~~dg~l~~ld~ 892 (900)
...++..|+....|.|..++.
T Consensus 310 ~~~~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 310 FLDPEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred EeCCCceEEECCCceEEEecC
Confidence 235788888888898888764
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.13 E-value=5 Score=41.42 Aligned_cols=178 Identities=15% Similarity=0.141 Sum_probs=90.8
Q ss_pred EecCCCeEEEEECCCCcEEEEEec-CCceeeceeEec-CCCEEEEEeeCCEEEEEECC-CCcEEE-----------EEec
Q 002615 562 VGSHSHKFICADAKRSSVLWEIKL-EGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYL-TGDIYW-----------TFQT 627 (900)
Q Consensus 562 igs~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~-~~~~i~vg~~dg~l~~~d~~-tG~~~w-----------~~~~ 627 (900)
+++.|..|..||.++ +.--..+. ..+...+...-+ .+..+.|||..| |..|... ++..-- .++.
T Consensus 115 va~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~ 192 (445)
T KOG2139|consen 115 VATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQD 192 (445)
T ss_pred hhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeC
Confidence 445566677777665 22212211 112223334433 334688888766 5556422 221110 0111
Q ss_pred CC-ceeeeeeEeCCCCEEEEecC-CCeEEEEECCCCeEEEeeccCCccccCceeeccCCEEEEEeCCCcEEEEEcCCCCc
Q 002615 628 CG-EVKCQPVVDAPRQLIWCGSH-DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPF 705 (900)
Q Consensus 628 ~~-~~~~~~~~~~~~~~i~~gs~-dg~l~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g 705 (900)
++ ..+.+....+++..+..++. +..+..||+.+|..+--...+..-++-...+++++.++.++-++....|+.+..--
T Consensus 193 pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt 272 (445)
T KOG2139|consen 193 PGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWT 272 (445)
T ss_pred CCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccce
Confidence 11 22344445555555555554 46799999999876543333333344445566788999999999888885443111
Q ss_pred eeeeEeecCCcceeeeeeeeCCCEEEE-EeecCcEEEEC
Q 002615 706 HTLWLHELEVPAFASLCITSANRHVIC-CLVDGHVVALD 743 (900)
Q Consensus 706 ~~~w~~~~~~~~~~s~~~~~~~~~i~~-~~~~g~v~~~d 743 (900)
+..|... .....+.+..+.+..+.. ++..-.+|.+.
T Consensus 273 ~erw~lg--sgrvqtacWspcGsfLLf~~sgsp~lysl~ 309 (445)
T KOG2139|consen 273 KERWILG--SGRVQTACWSPCGSFLLFACSGSPRLYSLT 309 (445)
T ss_pred ecceecc--CCceeeeeecCCCCEEEEEEcCCceEEEEe
Confidence 2333322 223344455555555433 33444555544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 900 | ||||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 6e-31 | ||
| 3dhv_A | 512 | Crystal Structure Of Dlta Protein In Complex With D | 2e-26 | ||
| 3fcc_A | 512 | Crystal Structure Of Dlta Protein In Complex With A | 2e-26 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 2e-26 | ||
| 3e7w_A | 511 | Crystal Structure Of Dlta: Implications For The Rea | 1e-24 | ||
| 4gr5_A | 570 | Crystal Structure Of Slgn1deltaasub In Complex With | 8e-22 | ||
| 4dg8_A | 620 | Structure Of Pa1221, An Nrps Protein Containing Ade | 1e-19 | ||
| 3l8c_A | 521 | Structure Of Probable D-Alanine--Poly(Phosphoribito | 8e-18 | ||
| 2p2b_A | 652 | Acetyl-coa Synthetase, V386a Mutation Length = 652 | 2e-16 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 2e-16 | ||
| 2p20_A | 652 | Acetyl-Coa Synthetase, R584a Mutation Length = 652 | 3e-16 | ||
| 2p2q_A | 652 | Acetyl-Coa Synthetase, R584e Mutation Length = 652 | 3e-16 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 4e-16 | ||
| 2p2f_A | 652 | Acetyl-coa Synthetase, Wild-type With Acetate, Amp, | 4e-16 | ||
| 2p2m_A | 652 | Acetyl-Coa Synthetase, R194a Mutation Length = 652 | 4e-16 | ||
| 2p2j_A | 652 | Acetyl-Coa Synthetase, K609a Mutation Length = 652 | 2e-15 | ||
| 3vnq_A | 544 | Co-crystal Structure Of Nrps Adenylation Protein Cy | 2e-14 | ||
| 3ipl_A | 501 | Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig | 4e-13 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 6e-13 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 2e-12 | ||
| 1mdb_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb-adeny | 2e-11 | ||
| 3o82_A | 544 | Structure Of Base N-Terminal Domain From Acinetobac | 3e-11 | ||
| 1ry2_A | 663 | Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe | 4e-11 | ||
| 1md9_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb And A | 4e-11 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 1e-10 | ||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 7e-10 | ||
| 3ite_A | 562 | The Third Adenylation Domain Of The Fungal Sidn Non | 3e-09 | ||
| 2wd9_A | 569 | Crystal Structure Of Human Acyl-coa Synthetase Medi | 3e-09 | ||
| 3b7w_A | 570 | Crystal Structure Of Human Acyl-Coa Synthetase Medi | 3e-09 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 5e-09 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 2e-08 | ||
| 3rg2_A | 617 | Structure Of A Two-Domain Nrps Fusion Protein Conta | 1e-07 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 3e-07 | ||
| 4gr4_A | 469 | Crystal Structure Of Slgn1deltaasub Length = 469 | 9e-07 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 2e-06 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 3e-06 | ||
| 3hxj_A | 330 | Crystal Structure Of Pyrrolo-quinoline Quinone (pqq | 3e-06 | ||
| 3hxj_A | 330 | Crystal Structure Of Pyrrolo-quinoline Quinone (pqq | 5e-04 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 2e-05 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 1e-04 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 2e-04 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 2e-04 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 3e-04 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 3e-04 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 9e-04 |
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512 | Back alignment and structure |
|
| >pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
| >pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511 | Back alignment and structure |
|
| >pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570 | Back alignment and structure |
|
| >pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing Adenylation And Pcp Domains Length = 620 | Back alignment and structure |
|
| >pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521 | Back alignment and structure |
|
| >pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
| >pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 | Back alignment and structure |
|
| >pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544 | Back alignment and structure |
|
| >pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 | Back alignment and structure |
|
| >pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544 | Back alignment and structure |
|
| >pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663 | Back alignment and structure |
|
| >pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non- Ribosomal Peptide Synthetase Length = 562 | Back alignment and structure |
|
| >pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569 | Back alignment and structure |
|
| >pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|3HXJ|A Chain A, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh) From Methanococcus Maripaludis, Northeast Structural Genomics Consortium Target Mrr86 Length = 330 | Back alignment and structure |
|
| >pdb|3HXJ|A Chain A, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh) From Methanococcus Maripaludis, Northeast Structural Genomics Consortium Target Mrr86 Length = 330 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 232 bits (595), Expect = 2e-63
Identities = 95/439 (21%), Positives = 190/439 (43%), Gaps = 63/439 (14%)
Query: 1 MQDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAY 60
D ++ L ++ +F +F +++L A L++ + + +
Sbjct: 638 HVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADE-HTLLDTERLTDLILQE 696
Query: 61 SISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILN 120
+++ + +L ++ L+ ++ GE + ++ ++N
Sbjct: 697 NVNVMFATTALFNLLT-----DAGEDWMKGLRCILFGGERASVPHVRKALRIMGPGKLIN 751
Query: 121 LYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI-VLVESDTVKPDE----- 174
YG TE + T LP ++ S+PIG PISN + +L +E
Sbjct: 752 CYGPTEGTVFATAHVVHDLPD-----SISSLPIGKPISNASVYIL--------NEQSQLQ 798
Query: 175 -----GEIYAGGLCLSNGYF--SEST---FMPSEYVKLHNNSICNCSVSCGSQTYFRTGD 224
GE+ G+ +S GY ++ T F+ + + G Y RTGD
Sbjct: 799 PFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKP-------------GETLY-RTGD 844
Query: 225 FARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILV 284
AR + G + + GR D +KI G R+ LEEIE L+ +P V D VV+ +H+ +
Sbjct: 845 LARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASIN 904
Query: 285 AFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTS 344
A++V + + ++ + +K+ + +LP M+P F F+D LP+T++GKV+ L
Sbjct: 905 AYLVNRTQLSAED-----VKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQ 959
Query: 345 FTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAH----- 399
++ + + + + I + L +++ HD+FF +GG+++ A A
Sbjct: 960 DQLAEEWIGPRNEMEETIAQI---WSEVLGRKQIGIHDDFFALGGHALKAMTAASRIKKE 1016
Query: 400 -NLGIDMRLIYNFPTPSKL 417
+ + ++L++ PT + +
Sbjct: 1017 LGIDLPVKLLFEAPTIAGI 1035
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 219 bits (560), Expect = 1e-62
Identities = 94/358 (26%), Positives = 155/358 (43%), Gaps = 50/358 (13%)
Query: 1 MQDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAY 60
+ +P+ G ++ L + SF + + + + TL + + L+
Sbjct: 175 ICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTK-DAVNKPKVLFEELKKS 233
Query: 61 SISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILN 120
++ T+ PS +++ L + + + + GEVLP+S+ + + FP I N
Sbjct: 234 GLNVWTSTPSFVQMCL--MDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFN 291
Query: 121 LYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI-VLVESDTVKPDE----- 174
YG TE + T + +S +S+P+G + +I ++ DE
Sbjct: 292 TYGPTEATVAVTSVEITND----VISRSESLPVGFAKPDMNIFIM--------DEEGQPL 339
Query: 175 -----GEIYAGGLCLSNGYF--SEST---FMPSEYVKLHNNSICNCSVSCGSQTYFRTGD 224
GEI G +S GY E T F E G Y RTGD
Sbjct: 340 PEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHE----------------GQWAY-RTGD 382
Query: 225 FARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILV 284
A IQ G + GR D IK++G RM LEEIE +R V V+ ++ G + L+
Sbjct: 383 -AGFIQDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLI 441
Query: 285 AFIVLKEKKTSSEIFLSS-IKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSA 341
A IV +E + E L+S IK +++ LP MIP +F++ D + MT++GK+D +
Sbjct: 442 AAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGE 499
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 217 bits (555), Expect = 7e-62
Identities = 98/350 (28%), Positives = 161/350 (46%), Gaps = 34/350 (9%)
Query: 1 MQDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAY 60
+ + L ++ L + SF + + +++T TL ++ + L+
Sbjct: 176 AVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK-DMIARPKDLFASLEQS 234
Query: 61 SISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILN 120
I T+ PS + L +++ + + ++K + GEVLP + + + FP +I+N
Sbjct: 235 DIQVWTSTPSFAEMCL--MEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMN 292
Query: 121 LYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI-VLVESDTVKPD--EGEI 177
YG TE + T + KS+P+G S+C + ++ E T+ PD +GEI
Sbjct: 293 TYGPTEATVAVTGIHVTEEV----LDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEI 348
Query: 178 YAGGLCLSNGYF--SEST---FMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSG 232
G +S GY E T F + + Y +TGD A +++G
Sbjct: 349 VIVGPSVSVGYLGSPELTEKAFTMIDGERA----------------Y-KTGD-AGYVENG 390
Query: 233 DLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEK 292
L + GR D IK++G RM LEEIEH LR V +V K + L+A +V E
Sbjct: 391 LLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEH 450
Query: 293 KTSSEIFLSS-IKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSA 341
E L+S IK ++ +LP MIP +F++ S+PMT +GKVD L +
Sbjct: 451 SFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLS 500
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Length = 330 | Back alignment and structure |
|---|
Score = 210 bits (536), Expect = 3e-61
Identities = 65/362 (17%), Positives = 128/362 (35%), Gaps = 48/362 (13%)
Query: 534 QELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSA 593
+ W+ + + +D+SP++ + +++GS + + A SV W K IEC
Sbjct: 10 KIKWEFLIGNSIDSSPILA---KNGTIYLGSSNKN-LYAINTDGSVKWFFKSGEIIECRP 65
Query: 594 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNL 653
++ D + G K+Y ++ G W F T + + +++ S D +L
Sbjct: 66 SIGKD-GTIYFGS--DKVYAIN-PDGTEKWRFDTKKAIVSDFTIFE--DILYVTSMDGHL 119
Query: 654 YALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 713
YA++ + ++ +I+ +P + E +YV S L AI+ W +
Sbjct: 120 YAIN-TDGTEKWRFKTKKAIYATPIVSE-DGTIYVGSNDNYLYAINPDG---TEKWRFKT 174
Query: 714 EVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVL 773
++ I V A++ G+ W G P S +
Sbjct: 175 NDAITSAASIGKDGTIYFG---SDKVYAINPDGTEKWNFYAGYWTVTRPAISED--GTIY 229
Query: 774 ICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGS 833
+ S +G +Y+ G W + G I +S I + + G
Sbjct: 230 VTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGN------------TDTIYFGSYDGH 276
Query: 834 IHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMI-GGRVFVGCRDDYIYCIAL 892
++ + + G E E I ++PV+ G ++ G R+ Y +
Sbjct: 277 LYAI----NPDGTE----------KWNFETGSWIIATPVIDENGTIYFGTRNGKFYALFN 322
Query: 893 ET 894
Sbjct: 323 LE 324
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Length = 330 | Back alignment and structure |
|---|
Score = 181 bits (462), Expect = 4e-51
Identities = 59/314 (18%), Positives = 112/314 (35%), Gaps = 36/314 (11%)
Query: 534 QELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSA 593
W ++ P + D ++ GS + A + W + I
Sbjct: 50 SVKWFFKSGEIIECRPSI---GKDGTIYFGSDK---VYAINPDGTEKWRFDTKKAIVSDF 103
Query: 594 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNL 653
+ D + V G +Y ++ G W F+T + P+V I+ GS+D+ L
Sbjct: 104 TIFEDI--LYVTSMDGHLYAIN-TDGTEKWRFKTKKAIYATPIVSEDG-TIYVGSNDNYL 159
Query: 654 YALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 713
YA++ + ++ +I + +I + +Y S ++ AI+ W
Sbjct: 160 YAIN-PDGTEKWRFKTNDAITSAASIGK-DGTIYFGS--DKVYAINPDG---TEKWNFYA 212
Query: 714 EVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVL 773
I S + + +DGH+ A++ G+ WR +TG I + P +
Sbjct: 213 GYWTVTRPAI-SEDGTIYVTSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNT--DTIY 269
Query: 774 ICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGS 833
S +G +Y+ G W + G I A+ IDE + + T +G
Sbjct: 270 FGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDE------------NGTIYFGTRNGK 316
Query: 834 IHILRVNLDVTGKE 847
+ L ++
Sbjct: 317 FYALF---NLEHHH 327
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Length = 330 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 9e-39
Identities = 49/262 (18%), Positives = 87/262 (33%), Gaps = 22/262 (8%)
Query: 534 QELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSA 593
E W+ + + + + + L+V S + + W K + I +
Sbjct: 88 TEKWRFDTKKAIVSDFTI----FEDILYVTSMDGHLYAINTDGT-EKWRFKTKKAIYATP 142
Query: 594 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNL 653
V D + VG +Y ++ G W F+T + + + + +
Sbjct: 143 IVSED-GTIYVGSNDNYLYAIN-PDGTEKWRFKTNDAITSAASIGKDGTIYFGS---DKV 197
Query: 654 YALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 713
YA++ + G PAI E +YV S G L AI+ W +
Sbjct: 198 YAINPDG-TEKWNFYAGYWTVTRPAISE-DGTIYVTSLDGHLYAINPDG---TEKWRFKT 252
Query: 714 EVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPS--Q 771
+S I + DGH+ A++ G+ W TG I A P +
Sbjct: 253 GKRIESSPVI-GNTDTIYFGSYDGHLYAINPDGTEKWNFETGSWIIATP----VIDENGT 307
Query: 772 VLICSRNGSIYSFEQESGNLLW 793
+ +RNG Y+ +
Sbjct: 308 IYFGTRNGKFYALFNLEHHHHH 329
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Length = 330 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 1e-14
Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 31/152 (20%)
Query: 739 VVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVG 798
+ + I W G I + P A + + S N ++Y+ G++ W + G
Sbjct: 2 LRGGVNDCKIKWEFLIGNSIDSSPI--LAKNGTIYLGSSNKNLYAINT-DGSVKWFFKSG 58
Query: 799 DPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEF 858
+ I I + D + S ++ ++ G E D
Sbjct: 59 EIIECRPSIGK------------DGTIYF--GSDKVYA----INPDGTEKWRFD------ 94
Query: 859 AKLELQGDIFSSPVMIGGRVFVGCRDDYIYCI 890
+ I S + ++V D ++Y I
Sbjct: 95 ----TKKAIVSDFTIFEDILYVTSMDGHLYAI 122
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 213 bits (546), Expect = 2e-60
Identities = 81/361 (22%), Positives = 137/361 (37%), Gaps = 53/361 (14%)
Query: 2 QDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYS 61
+ + + +L + SF + + + TL P EL + + +
Sbjct: 180 DAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPK-ELVADFKQLFTTIAQLP 238
Query: 62 ISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNL 121
+ T+ PS + + L +L GE L +S + + FP+ I+N
Sbjct: 239 VGIWTSTPSFADMAM--LSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINA 296
Query: 122 YGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI-VLVESDTVKPDE------ 174
YG TE + + + R + +PIG P + ++ DE
Sbjct: 297 YGPTEATVALSAIEITREM----VDNYTRLPIGYPKPDSPTYII--------DEDGKELS 344
Query: 175 ----GEIYAGGLCLSNGYF--SEST---FMPSEYVKLHNNSICNCSVSCGSQTYFRTGDF 225
GEI G +S GY E T F + G Y TGD
Sbjct: 345 SGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFK----------------GQPAY-HTGDI 387
Query: 226 ARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHK-HQGELVILV 284
+ L++ GR D IK G R+ LE++ L P V V + ++ L+
Sbjct: 388 GSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLL 447
Query: 285 AFIVLKEKKTSS----EIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLS 340
A+IV+K+ +IK+ V + M+P++F++ DSLP+T +GK+D +L
Sbjct: 448 AYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLI 507
Query: 341 A 341
Sbjct: 508 N 508
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 211 bits (540), Expect = 3e-59
Identities = 91/357 (25%), Positives = 159/357 (44%), Gaps = 61/357 (17%)
Query: 1 MQDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAY 60
++ + ++ + SISF + E A+LT +L + + + + ++
Sbjct: 214 FENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILK-DTINDFVKFEQYINQK 272
Query: 61 SISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILN 120
I+ +T P+ + + P S++ L+ +G +++K ++ +N
Sbjct: 273 EITVITLPPTYVVHLDPERIL--------SIQTLITAGSATS---PSLVNKWKEKVTYIN 321
Query: 121 LYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI-VLVESDTVKPDE----- 174
YG TE + T + + + SVPIG PI N I ++ DE
Sbjct: 322 AYGPTETTICATTWVATK------ETIGHSVPIGAPIQNTQIYIV--------DENLQLK 367
Query: 175 -----GEIYAGGLCLSNGYF--SEST---FMPSEYVKLHNNSICNCSVSCGSQTYFRTGD 224
GE+ GG L+ GY+ E T F+ + +V G + Y +TGD
Sbjct: 368 SVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVP-------------GEKLY-KTGD 413
Query: 225 FARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILV 284
AR + G++ +LGR D +KI G R+ LEE+E L H + +TAV HK E L
Sbjct: 414 QARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLC 473
Query: 285 AFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSA 341
A+ V ++ + ++ + S +LP MIP+ F+ +D +P+TS+GK+D L
Sbjct: 474 AYFVSEKHIPLEQ-----LRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPE 525
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 212 bits (542), Expect = 4e-59
Identities = 86/441 (19%), Positives = 150/441 (34%), Gaps = 71/441 (16%)
Query: 1 MQDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAY 60
Q + L + +SF E A+L V+ + + +
Sbjct: 195 GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLND--LGPLDPGVLRQLIGER 252
Query: 61 SISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILN 120
SL ++ + L+ L+ G++L + P + ++N
Sbjct: 253 GADSAWLTASLFNTLV-----DLDPDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVN 307
Query: 121 LYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI-VLVESDTVKPDE----- 174
YG TE + +PIG I+ + +L DE
Sbjct: 308 GYGPTENTTFTCCHVVTDDDL-----EEDDIPIGKAIAGTAVLLL--------DEHGQEI 354
Query: 175 ------GEIYAGGLCLSNGYF--SEST---FMPSEYVKLHNNSICNCSVSCGSQTYFRTG 223
GEI A G L+ GY + T F+ Y + Y RTG
Sbjct: 355 AEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYR------------GRLLRAY-RTG 401
Query: 224 DFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVIL 283
D AR + G L F+GR D +K+NG R+ L +E R P ++D A++ + G +L
Sbjct: 402 DRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLL 461
Query: 284 VAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSAST 343
A+ + + + +LP P+ V +++LP+T+ GK+D A+L
Sbjct: 462 CAWTGKAD----------ASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLR-R 510
Query: 344 SFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVA----- 398
+ + + + L E +FF GGNS+ A +
Sbjct: 511 LEEPLERCASALDPDQRGCAQL---WSELLGCEVGAADQDFFLCGGNSLLALQLVALCQS 567
Query: 399 HNLGID--MRLIYNFPTPSKL 417
G + + + +
Sbjct: 568 AGAGANLGLADLQANSRLDQF 588
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 192 bits (489), Expect = 2e-52
Identities = 73/360 (20%), Positives = 128/360 (35%), Gaps = 54/360 (15%)
Query: 1 MQDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAY 60
L G L S +F H+ E A V + + +L +
Sbjct: 215 APKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLP---RTFREL 271
Query: 61 SISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILN 120
++ VPSL+ P L L + GE + I S ++++N
Sbjct: 272 GVTHAGIVPSLLDQTG-----LVPEDAPH-LVYLGVGGEKMTPRTQQIWSSS-DRVALVN 324
Query: 121 LYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKP----DEGE 176
+YG TEV+ C+ + IG P+ + ++ + + GE
Sbjct: 325 VYGPTEVTIGCSAGRILPDS--------DTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGE 376
Query: 177 IYAGGLCLSNGYF--SEST-FMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGD 233
+ G ++NGY ++ F G + Y RTGD R
Sbjct: 377 LVIEGSLVANGYLNRPDAKGFCDIN----------------GRKMY-RTGDIVRMDADSS 419
Query: 234 LVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGEL--VILVAFIV--- 288
++FLGRKD +K+ GQR+ L E+ +R V + LV+F+
Sbjct: 420 ILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSG 479
Query: 289 ------LKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPM-TSSGKVDYASLSA 341
L+ + + +S++ LP M+P+ + + +P+ +S K D +L
Sbjct: 480 AAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEH 539
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Length = 369 | Back alignment and structure |
|---|
Score = 148 bits (374), Expect = 6e-39
Identities = 43/302 (14%), Positives = 93/302 (30%), Gaps = 32/302 (10%)
Query: 592 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDH 651
S L + + + V G ++ + TG I WT + ++ V+ P +D
Sbjct: 3 STVTLPE-TLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEP--AFLPDPNDG 59
Query: 652 NLYALDFRNYRCVYKLPC--GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLW 709
+LY L +N + KLP + SP +LY+ I +
Sbjct: 60 SLYTLGSKNNEGLTKLPFTIPELVQASPCRSS-DGILYMGKKQDIWYVIDLLTG--EKQQ 116
Query: 710 LHELEVPAFASLCITSANRHVICCLVDGHVVALDS-SGSIIWRCRTGGPIFAGPCTSFAL 768
S + + + + D+ + + W + P
Sbjct: 117 TLSSAFADSLS----PSTSLLYLGRTEYTITMYDTKTRELRWNATYFDYAASLPEDDVDY 172
Query: 769 PSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCIC 828
+ + +G + + + ESG++LW + P+ A + +++ I
Sbjct: 173 KMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQRE---------GLRKVMHIN 223
Query: 829 TSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIY 888
+ ++ L G+ + K + + ++VG +Y
Sbjct: 224 VAVETLRYLTFMSGEVGRITKWKYPF----------PKETEAKSKLTPTLYVGKYSTSLY 273
Query: 889 CI 890
Sbjct: 274 AS 275
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Length = 369 | Back alignment and structure |
|---|
Score = 97.0 bits (241), Expect = 1e-21
Identities = 38/308 (12%), Positives = 82/308 (26%), Gaps = 29/308 (9%)
Query: 529 KRGFIQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR 588
K + V ASP SD L++G + D +
Sbjct: 67 KNNEGLTKLPFTIPELVQASPCRS---SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA 123
Query: 589 IECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQ-LIWCG 647
S + S + +G + I D T ++ W P D + +
Sbjct: 124 DSLSPST----SLLYLGRTEYTITMYDTKTRELRWNATYFDYAASLPEDDVDYKMSHFVS 179
Query: 648 SHDHNLYALDFRNYRCVYKLPCGGSIFGSPAI--DEVHDVLYVASTSGRLTAISVKALPF 705
+ D + +D + ++ + + + V+++ L ++ +
Sbjct: 180 NGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLRKVMHINVAVETLRYLTFMSGEV 239
Query: 706 HTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDS---SGSIIWRCRTGGPIFAGP 762
+ + P + + + A S G + + P+ GP
Sbjct: 240 GRITKWKYPFPKETEA-KSKLTPTLYVGKYSTSLYASPSMVHEGVAVVPRGSTLPLLEGP 298
Query: 763 CTSFALPSQVLICSRNGSI-------------YSFEQESGNLLWEYSVGDPITASAYIDE 809
T S ++ + L+ + P++AS + E
Sbjct: 299 QTDGVTIGDKGESVITPSTDVKFDPGLKSKNKLNYLRNYWLLIGHHET--PLSASTKMLE 356
Query: 810 HLQLKLES 817
L
Sbjct: 357 RFPNNLPK 364
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Length = 369 | Back alignment and structure |
|---|
Score = 91.3 bits (226), Expect = 9e-20
Identities = 32/231 (13%), Positives = 63/231 (27%), Gaps = 45/231 (19%)
Query: 670 GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHT---LWLHELEVPAFASLCITSA 726
G S + + E +L+V++ G L A+S + T W + + +
Sbjct: 1 GSS---TVTLPE--TLLFVSTLDGSLHAVSKR-----TGSIKWTLKEDPVLQVPTHV--E 48
Query: 727 NRHVICCLVDGHVVALDS---SGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYS 783
+ DG + L S G + A PC S + + + Y
Sbjct: 49 EPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSS--DGILYMGKKQDIWYV 106
Query: 784 FEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDV 843
+ +G S + S L+ + + +I +
Sbjct: 107 IDLLTGEKQQTLSSAFADSLSPS---------------TSLLYLGRTEYTITMYDTK--- 148
Query: 844 TGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALET 894
T + + + V FV D + + E+
Sbjct: 149 TREL-------RWNATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSES 192
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 3e-35
Identities = 61/385 (15%), Positives = 130/385 (33%), Gaps = 65/385 (16%)
Query: 533 IQELWKVHMESCVD-----ASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEG 587
W + S + P + +D ++ + +A +W + L
Sbjct: 28 PTTAWSTSVGSGIGNFYSNLHPAL----ADNVVYAADRAGLVKALNADDGKEIWSVSLAE 83
Query: 588 RIEC--------SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDA 639
+ S V V +G K ++Y L+ G + W + GE +PVV
Sbjct: 84 KDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS- 142
Query: 640 PRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG---SIFGSPAIDEVHDVLYVASTSGRLT 696
L+ + + L AL+ + + + S+ G A V +GR++
Sbjct: 143 -DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVS 201
Query: 697 AISVKALPFHTLWLHELEVPAFAS-----LCITS----ANRHVICCLVDGHVVALD-SSG 746
A+ ++ +W + ++ + + N V +G++ ALD SG
Sbjct: 202 AVLMEQG--QMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG 259
Query: 747 SIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAY 806
I+W+ G +++ + +N + + + G LW S ++
Sbjct: 260 QIMWKRELGS--VNDFIVDG---NRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSP 314
Query: 807 IDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGD 866
+ + + + S G +H + V G+ A+ ++
Sbjct: 315 V------------LYNGNLVVGDSEGYLHWINVE---DGRFV----------AQQKVDSS 349
Query: 867 -IFSSPVMIGGRVFVGCRDDYIYCI 890
+ PV G++ + +D +Y I
Sbjct: 350 GFQTEPVAADGKLLIQAKDGTVYSI 374
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 2e-26
Identities = 45/269 (16%), Positives = 106/269 (39%), Gaps = 32/269 (11%)
Query: 534 QELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEG---RIE 590
W+ + + P+V SD + + + + + + +V W + L+ +
Sbjct: 124 TVAWQTKVAGEALSRPVV----SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179
Query: 591 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT-----------CGEVKCQPVVDA 639
+A F VVG G++ + G + W + +V PVV
Sbjct: 180 GESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV- 238
Query: 640 PRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAIS 699
+++ +++ NL ALD R+ + ++K G +D + +Y+ + R+ A++
Sbjct: 239 -NGVVFALAYNGNLTALDLRSGQIMWKRELGS--VNDFIVDG--NRIYLVDQNDRVMALT 293
Query: 700 VKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG-P 757
+ TLW + + N +++ +G++ ++ G + + +
Sbjct: 294 IDGG--VTLWTQSDLLHRLLT-SPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSG 350
Query: 758 IFAGPCTSFALPSQVLICSRNGSIYSFEQ 786
P A ++LI +++G++YS +
Sbjct: 351 FQTEP---VAADGKLLIQAKDGTVYSITR 376
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 5e-23
Identities = 43/230 (18%), Positives = 88/230 (38%), Gaps = 30/230 (13%)
Query: 676 SPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLC--------ITSAN 727
PA+ + +V+Y A +G + A++ +W L +T +
Sbjct: 48 HPALAD--NVVYAADRAGLVKALNADD--GKEIWSVSLAEKDGWFSKEPALLSGGVTVSG 103
Query: 728 RHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQ 786
HV V AL+ S G++ W+ + G + P S VLI + NG + + +
Sbjct: 104 GHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS---DGLVLIHTSNGQLQALNE 160
Query: 787 ESGNLLWEYSVGDPITASAYIDEHLQLKLES-CLSIDRLVCICTSSGSIHILRVNLDVTG 845
G + W ++ P L L+ ES + + +G + + + G
Sbjct: 161 ADGAVKWTVNLDMPS---------LSLRGESAPTTAFGAAVVGGDNGRVSAVLME---QG 208
Query: 846 KEN-QSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALET 894
+ Q + +++ D+ ++PV++ G VF + + + L +
Sbjct: 209 QMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRS 258
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376 | Back alignment and structure |
|---|
Score = 84.1 bits (208), Expect = 2e-17
Identities = 27/183 (14%), Positives = 65/183 (35%), Gaps = 19/183 (10%)
Query: 519 VNWSLEVPRNKRGFIQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSS 578
+ W + + + S VD +P+VV + +F +++ D +
Sbjct: 210 MIWQQRISQATGSTEIDRL-----SDVDTTPVVV----NGVVFALAYNGNLTALDLRSGQ 260
Query: 579 VLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT-CGEVKCQPVV 637
++W+ +L + D +++ + ++ L G WT + PV+
Sbjct: 261 IMWKRELGS----VNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL 316
Query: 638 DAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS-IFGSPAIDEVHDVLYVASTSGRLT 696
+ G + L+ ++ + R V + S P + L + + G +
Sbjct: 317 YN--GNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAAD--GKLLIQAKDGTVY 372
Query: 697 AIS 699
+I+
Sbjct: 373 SIT 375
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 5e-10
Identities = 23/154 (14%), Positives = 46/154 (29%), Gaps = 22/154 (14%)
Query: 745 SGSIIWRCRTGGPIFAGPCTSFALPS----QVLICSRNGSIYSFEQESGNLLWEYSVGDP 800
+ + W G I G S P+ V R G + + + G +W S+ +
Sbjct: 27 TPTTAWSTSVGSGI--GNFYSNLHPALADNVVYAADRAGLVKALNADDGKEIWSVSLAEK 84
Query: 801 ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAK 860
+ L + V I + ++ L + G
Sbjct: 85 DGWFSKEPALLSGGV---TVSGGHVYIGSEKAQVYALNTS---DGTVAWQT--------- 129
Query: 861 LELQGDIFSSPVMIGGRVFVGCRDDYIYCIALET 894
++ G+ S PV+ G V + + + +
Sbjct: 130 -KVAGEALSRPVVSDGLVLIHTSNGQLQALNEAD 162
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 6e-05
Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 11/110 (10%)
Query: 785 EQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVT 844
Q + W SVG I + + L D +V +G + L +
Sbjct: 24 NQFTPTTAWSTSVGSGIG-----NFYSNL---HPALADNVVYAADRAGLVKALNAD---D 72
Query: 845 GKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALET 894
GKE S ++ + + + GG V++G +Y +
Sbjct: 73 GKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSD 122
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 2e-26
Identities = 73/291 (25%), Positives = 122/291 (41%), Gaps = 42/291 (14%)
Query: 52 SIIHFLQAYSISRLTTVPSLMRVVL--PALQSQHNMHVPSSLKLLVLSGEVLPLSMWDII 109
+I L + + VP+L +L P L ++ ++++ +GE LP + +
Sbjct: 265 AIFARLVEHRPTVFYGVPTLYANMLVSPNLPARA----DVAIRICTSAGEALPREIGERF 320
Query: 110 SKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVP--IGLPISNCDIVLVES 167
+ F IL+ GSTE+ L G P+ +I L +
Sbjct: 321 TAHF-GCEILDGIGSTEML-----------HIFLSNRAGAVEYGTTGRPVPGYEIELRDE 368
Query: 168 D--TVKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVK-LHNNSICNCSVSCGSQTYFRTG 223
V E G++Y G + Y++ + + R+G
Sbjct: 369 AGHAVPDGEVGDLYIKGPSAAVMYWN----NREKSRATFLGE-------------WIRSG 411
Query: 224 DFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVIL 283
D R+ +G V+ GR D +K++GQ ++ E+E L H V++ AVV H LV
Sbjct: 412 DKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVDHG-GLVKT 470
Query: 284 VAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
AF+VLK + SEI +K++V +L P VF+D LP T++GK+
Sbjct: 471 RAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKI 521
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 4e-25
Identities = 66/324 (20%), Positives = 121/324 (37%), Gaps = 62/324 (19%)
Query: 28 FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVL---PALQSQHN 84
L ++ +V+ E + L S+ Q Y I VP+L + +++
Sbjct: 252 TLGYLICGFRVVLMYRFEEELFLRSL----QDYKIQSALLVPTLF-SFFAKSTLID-KYD 305
Query: 85 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGD--CTYFDCKRLPSI 142
+ S+L + G L + + ++K F I YG TE + T + ++
Sbjct: 306 L---SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAV 362
Query: 143 LEMSTLKSVPIGLPISNCDIVLVESDT---VKPDE-GEIYAGGLCLSNGYF-----SEST 193
G + + +V+ DT + ++ GE+ G + +GY + +
Sbjct: 363 -----------GKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNAL 411
Query: 194 FMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMAL 253
G + +GD A + + R IK G ++A
Sbjct: 412 I-----------------DKDG---WLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAP 451
Query: 254 EEIEHTLRGHPDVVDTAVVS--HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKL 311
E+E L HP++ D V GEL A +VL+ KT +E I +V+S++
Sbjct: 452 AELESILLQHPNIFDAGVAGLPDDDAGELP--AAVVVLEHGKTMTE---KEIVDYVASQV 506
Query: 312 -PLAMIPNRFVFMDSLPMTSSGKV 334
+ VF+D +P +GK+
Sbjct: 507 TTAKKLRGGVVFVDEVPKGLTGKL 530
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 4e-25
Identities = 94/414 (22%), Positives = 163/414 (39%), Gaps = 61/414 (14%)
Query: 29 LSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVP 88
L L T+V+ I + + ++ VP + + L AL +
Sbjct: 246 LGVFLAGGTVVLAADPSATLCFPLI----EKHQVNVTALVPPAVSLWLQALIEGESRAQL 301
Query: 89 SSLKLLVLSGEVLPLS-MWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMST 147
+SLKLL + G L + I +++ + ++G E + T D + + T
Sbjct: 302 ASLKLLQVGGARLSATLAARIPAEI--GCQLQQVFGMAEGLVNYTRLD---DSAEKIIHT 356
Query: 148 LKSVPIGLPISNCD---IVLVESDTVKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKLH 203
G P+ D + E + + E G + G GY+ P H
Sbjct: 357 -----QGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYK----SPQ-----H 402
Query: 204 NNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR-KDRTIKIN--GQRMALEEIEHTL 260
N S + + ++ +GD G + GR KD+ IN G+++A EEIE+ L
Sbjct: 403 NAS------AFDANGFYCSGDLISIDPEGYITVQGREKDQ---INRGGEKIAAEEIENLL 453
Query: 261 RGHPDVVDTAVVS--HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAM--I 316
HP V+ A+VS + GE A++V+KE + ++ + ++ + +A +
Sbjct: 454 LRHPAVIYAALVSMEDELMGEKS--CAYLVVKEPLRAVQV-----RRFLREQ-GIAEFKL 505
Query: 317 PNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVE 376
P+R +DSLP+T+ GKVD L + SA + + L +VI +
Sbjct: 506 PDRVECVDSLPLTAVGKVDKKQLRQWLASRASAGRASIPASKAALREVILPLLDE---SD 562
Query: 377 EVLHHDNFFTMGGNSIAAAHVAHNL-----GIDMRLIYNFPTPSKLEIALLEKK 425
E DN G +S+ +A ID ++ PT LL ++
Sbjct: 563 EPFDDDNLIDYGLDSVRMMALAARWRKVHGDIDFVMLAKNPTIDAW-WKLLSRE 615
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 5e-25
Identities = 60/324 (18%), Positives = 116/324 (35%), Gaps = 62/324 (19%)
Query: 28 FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVL---PALQSQHN 84
L ++ +V+ + + L ++ Q Y + + VP+L +L L +++
Sbjct: 254 TLGYLICGFRVVMLTKFDEETFLKTL----QDYKCTSVILVPTLF-AILNKSELLN-KYD 307
Query: 85 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSG--DCTYFDCKRLPSI 142
+ S+L + G L + + +++ F + YG TE + T + +
Sbjct: 308 L---SNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGAS 364
Query: 143 LEMSTLKSVPIGLPISNCDIVLVESDT---VKPDE-GEIYAGGLCLSNGYF-----SEST 193
G + +++ DT + P+ GE+ G L GY ++
Sbjct: 365 -----------GKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKEL 413
Query: 194 FMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMAL 253
G + TGD + + R IK G ++
Sbjct: 414 IDE-----------------EG---WLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPP 453
Query: 254 EEIEHTLRGHPDVVDTAVVS--HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKL 311
E+E L HP + D V GEL A +VL+ K +E + +V+S++
Sbjct: 454 AELESVLLQHPSIFDAGVAGVPDPVAGELP--GAVVVLESGKNMTE---KEVMDYVASQV 508
Query: 312 -PLAMIPNRFVFMDSLPMTSSGKV 334
+ F+D +P +GK+
Sbjct: 509 SNAKRLRGGVRFVDEVPKGLTGKI 532
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 3e-23
Identities = 76/326 (23%), Positives = 128/326 (39%), Gaps = 62/326 (19%)
Query: 28 FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVL---PALQSQHN 84
L + +++ P E+ L I + Y +S VP +M + + P L +H+
Sbjct: 242 MLCGLRVGAPILIMPKFEIGSLLGLI----EKYKVSIAPVVPPVM-MSIAKSPDL-DKHD 295
Query: 85 MHVPSSLKLLV-----LSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRL 139
+ SSL+++ L E+ D + FP + YG TE L
Sbjct: 296 L---SSLRMIKSGGAPLGKELE-----DTVRAKFPQARLGQGYGMTEAGPVLAMC----L 343
Query: 140 PSILEMSTLKSVPIGLPISNCDIVLVESDTVK---PDE-GEIYAGGLCLSNGYF-----S 190
E +K G + N ++ +V+ +T ++ GEI G + GY +
Sbjct: 344 AFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEAT 403
Query: 191 ESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQR 250
T G + TGD +L + R IK G +
Sbjct: 404 SRTI-----------------DKEG---WLHTGDIGYIDDDDELFIVDRLKELIKYKGFQ 443
Query: 251 MALEEIEHTLRGHPDVVDTAVVS--HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVS 308
+A E+E L HP++ D AVV + GE+ VAF+V EK ++E IK ++S
Sbjct: 444 VAPAELEALLIAHPEISDAAVVGLKDEDAGEVP--VAFVVKSEKSQATE---DEIKQYIS 498
Query: 309 SKLPLAMIPNRFVFMDSLPMTSSGKV 334
++ R F++++P SGK+
Sbjct: 499 KQVIFYKRIKRVFFIEAIPKAPSGKI 524
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 3e-22
Identities = 68/292 (23%), Positives = 110/292 (37%), Gaps = 37/292 (12%)
Query: 52 SIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISK 111
I+ L +Y I + P + R++L S + L+ V GE L +
Sbjct: 288 VILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKF---PHLQNCVTVGESLLPETLENWRA 344
Query: 112 LFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPI-----GLPISNCDIVLVE 166
+ I YG TE + L K++ I G S D+ +++
Sbjct: 345 QT-GLDIRESYGQTE--------------TGLTCMVSKTMKIKPGYMGTAASCYDVQIID 389
Query: 167 SDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFA 226
G G + + S Y +N + G ++ GD
Sbjct: 390 DKGNVLPPGTE--GDIGIRVKPIRPIGIF-SGY---VDNPDKTAANIRGD--FWLLGDRG 441
Query: 227 RRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVS--HKHQGELVILV 284
+ + G F+GR D I +G R+ E+E+ L HP VV+TAV+S +GE+V
Sbjct: 442 IKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVV--K 499
Query: 285 AFIVLKE--KKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
AF+VL E ++ V S P + F+ +LP T +GK+
Sbjct: 500 AFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKI 551
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 99.5 bits (249), Expect = 8e-22
Identities = 77/320 (24%), Positives = 132/320 (41%), Gaps = 55/320 (17%)
Query: 29 LSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQ-SQHNMHV 87
L + +V+ P I + ++ VP L V + A + ++
Sbjct: 244 LGVLYAGGRVVLSPSPSPDDAFPLI----EREKVTITALVPPLAMVWMDAASSRRDDL-- 297
Query: 88 PSSLKLLVLSGEVLPLS-MWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMS 146
SSL++L + G + + ++ ++G E + T D P + ++
Sbjct: 298 -SSLQVLQVGGAKFSAEAARRVKAVF--GCTLQQVFGMAEGLVNYTRLD---DPEEIIVN 351
Query: 147 TLKSVPIGLPIS-NCDIVLVESD--TVKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKL 202
T G P+S + + + VKP E G + G GY+
Sbjct: 352 T-----QGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYK----AEE----- 397
Query: 203 HNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR-KDRTIKIN--GQRMALEEIEHT 259
HN + S ++RTGD R + G +V GR KD+ IN G+++A EE+E+
Sbjct: 398 HNAA------SFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQ---INRGGEKVAAEEVENH 448
Query: 260 LRGHPDVVDTAVVS--HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAM-- 315
L HP V D A+VS + GE FI+ +++ + +K+++ + LA
Sbjct: 449 LLAHPAVHDAAMVSMPDQFLGERS--CVFIIPRDEAPKAA----ELKAFLRER-GLAAYK 501
Query: 316 IPNRFVFMDSLPMTSSGKVD 335
IP+R F++S P T GKV
Sbjct: 502 IPDRVEFVESFPQTGVGKVS 521
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 8e-21
Identities = 76/322 (23%), Positives = 129/322 (40%), Gaps = 56/322 (17%)
Query: 29 LSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVL---PALQSQHNM 85
L + +++ P E+ L I Q ++ VP ++ + + ++++
Sbjct: 290 LCGLRVGAAILIMPKFEINLLLELI----QRCKVTVAPMVPPIV-LAIAKSSET-EKYDL 343
Query: 86 HVPSSLKLLV-----LSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLP 140
SS++++ L E+ D ++ FPN + YG TE L
Sbjct: 344 ---SSIRVVKSGAAPLGKELE-----DAVNAKFPNAKLGQGYGMTEAGPVLAM----SLG 391
Query: 141 SILEMSTLKSVPIGLPISNCDIVLVESDTVKP----DEGEIYAGGLCLSNGYFS--ESTF 194
E +KS G + N ++ +V+ DT GEI G + GY + +T
Sbjct: 392 FAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAAT- 450
Query: 195 MPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALE 254
+I G + TGD +L + R IK G ++A
Sbjct: 451 ---------AETI----DKDG---WLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPA 494
Query: 255 EIEHTLRGHPDVVDTAVVS--HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLP 312
E+E L GHPD+ D AVV+ + GE+ VAF+V + SE +K +VS ++
Sbjct: 495 ELEALLIGHPDITDVAVVAMKEEAAGEVP--VAFVVKSKDSELSE---DDVKQFVSKQVV 549
Query: 313 LAMIPNRFVFMDSLPMTSSGKV 334
N+ F +S+P SGK+
Sbjct: 550 FYKRINKVFFTESIPKAPSGKI 571
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 2e-20
Identities = 79/317 (24%), Positives = 128/317 (40%), Gaps = 49/317 (15%)
Query: 29 LSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVP 88
L + +V+ P E I Q + ++ + VPS + + L
Sbjct: 253 LGVLHAGGCVVMAPNPEPLNCFSII----QRHQVNMASLVPSAVIMWLEKAAQ--YKDQI 306
Query: 89 SSLKLLVLSGEVLPLS-MWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMST 147
SLKLL + G P S + L N + ++G E + T D +T
Sbjct: 307 QSLKLLQVGGASFPESLARQVPEVL--NCKLQQVFGMAEGLVNYTRLD---DSDEQIFTT 361
Query: 148 LKSVPIGLPISNCD---IVLVESDTVKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKLH 203
G PIS+ D IV + V E G + G GY+ P H
Sbjct: 362 -----QGRPISSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQ----SPE-----H 407
Query: 204 NNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR-KDRTIKIN--GQRMALEEIEHTL 260
N+ Y+ +GD +R G+L +GR KD+ IN G+++A EEIE +
Sbjct: 408 NSQ------VFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQ---INRGGEKIASEEIEKLI 458
Query: 261 RGHPDVVDTAVVS--HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 318
HP+V+ A+V+ + GE AFIV + + + + + + +P+
Sbjct: 459 LLHPEVMHAALVAIVDEQFGEKS--CAFIVSRNPELKAV---VLRRHLMELGIAQYKLPD 513
Query: 319 RFVFMDSLPMTSSGKVD 335
+ ++SLP+T+ GKVD
Sbjct: 514 QIKLIESLPLTAVGKVD 530
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 94.2 bits (235), Expect = 3e-20
Identities = 64/318 (20%), Positives = 125/318 (39%), Gaps = 62/318 (19%)
Query: 28 FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHV 87
L A++ T+ + ++ I+ ++ I+ ++ VP + ++ Q +H
Sbjct: 222 LLRAVIEGFTVRIVDKFNAEQ----ILTMIKNERITHISLVPQTLNWLM-----QQGLHE 272
Query: 88 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMST 147
P +L+ ++L G L +M + + N+ I N +G TE + L + +
Sbjct: 273 PYNLQKILLGGAKLSATMIETALQY--NLPIYNSFGMTETCSQFLTATPEMLHARPD--- 327
Query: 148 LKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVK-LHNNS 206
+ +G+P +N D+ + + GE+ G + NGY P++ N
Sbjct: 328 --T--VGMPSANVDVKIKNPNK--EGHGELMIKGANVMNGYL-----YPTDLTGTFEN-- 374
Query: 207 ICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALE-----EIEHTLR 261
G YF TGD A G ++ R+ I G E +IE +
Sbjct: 375 --------G---YFNTGDIAEIDHEGYVMIYDRRKDLIISGG-----ENIYPYQIETVAK 418
Query: 262 GHPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAM--IP 317
P + D G++ + V + + +++ +++S L A +P
Sbjct: 419 QFPGISDAVCVGHPDDTWGQVP--KLYFVSESDISKAQL-----IAYLSKHL--AKYKVP 469
Query: 318 NRFVFMDSLPMTSSGKVD 335
F +D+LP TS+GK+
Sbjct: 470 KHFEKVDTLPYTSTGKLQ 487
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 3e-19
Identities = 71/322 (22%), Positives = 121/322 (37%), Gaps = 46/322 (14%)
Query: 29 LSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVP 88
+ VV + + + ++ Y + VP + V++ L+S + +
Sbjct: 240 NLMVTVGNEYVVMGMFNQEM----LAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDW 295
Query: 89 SSLKLLVLSGEVLPLSMWDIISKLF------PNISILNLYGSTEVSGDCTYFDCKRLPSI 142
S LK+ + ++ + + KL P + ++G TE T RL
Sbjct: 296 SYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLD-- 353
Query: 143 LEMSTLKSVPIGLPISNCDIVLVESDT---VKPDE-GEIYAGGLCLSNGYFS--ESTFMP 196
KS G+P+S+ ++ ++ + + E GEI G + GY+ +
Sbjct: 354 ------KSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKEN--- 404
Query: 197 SEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEI 256
+FRTGD + G L F R IK G +A E+
Sbjct: 405 -------QECWWYDEKGRK---FFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFEL 454
Query: 257 EHTLRGHPDVVDTAVVS--HKHQGELVILVAFIVLKEKKTSSEIFLS--SIKSWVSSKLP 312
E L H V+D AV+ + GE+ AFIVLK + + I WV ++
Sbjct: 455 EALLMKHEAVMDVAVIGKPDEEAGEVP--KAFIVLKPEYRGK---VDEEDIIEWVRERIS 509
Query: 313 LAMIPNRFVFMDSLPMTSSGKV 334
F++ LP T+SGK+
Sbjct: 510 GYKRVREVEFVEELPRTASGKL 531
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 3e-19
Identities = 62/329 (18%), Positives = 109/329 (33%), Gaps = 75/329 (22%)
Query: 28 FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVL--PALQSQHNM 85
+ + + TL+ P + K + + + VP+++ + P
Sbjct: 229 VIFSAMRGVTLISMPQFDATK----VWSLIVEERVCIGGAVPAILNFMRQVPEFAE---- 280
Query: 86 HVPSSLKLLVLSGEVLPLSMWDIISKL-FPNISILNLYGSTEVSGDCTYFDCKRLPSILE 144
+ + G +P + +I NI ++ Y TE G T L S
Sbjct: 281 LDAPDFRYFITGGAPMPEA---LIKIYAAKNIEVVQGYALTESCGGGTL-----LLSEDA 332
Query: 145 MSTLKSVPIGLPISNCDIVLVESD--TVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKL 202
+ S G D+ + D + EGE+ L Y++ P
Sbjct: 333 LRKAGS--AGRATMFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWN----RPEA---- 382
Query: 203 HNNSICNCSVSCGSQT-------YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALE- 254
T +FRTGD G L R I G E
Sbjct: 383 ---------------TRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGG-----EN 422
Query: 255 ----EIEHTLRGHPDVVDTAVVS--HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVS 308
EIE + G P V + AV+ + GE+ A +V + + S + I +
Sbjct: 423 VYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIA--AAIVVADQNEVSEQ----QIVEYCG 476
Query: 309 SKLPLAM--IPNRFVFMDSLPMTSSGKVD 335
++L A +P + +F +++P +GK+
Sbjct: 477 TRL--ARYKLPKKVIFAEAIPRNPTGKIL 503
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 3e-19
Identities = 63/325 (19%), Positives = 118/325 (36%), Gaps = 69/325 (21%)
Query: 28 FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHV 87
L+ V+ + + ++A+ ++ + +L + Q
Sbjct: 219 MLTLQQAGGASVIAAKFDPAQ----AARDIEAHKVTVMAEFA----PMLGNILDQAAPAQ 270
Query: 88 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMST 147
+SL+ + + + PN + +G +E SG T+ + P
Sbjct: 271 LASLRAVTGLDTPETI---ERFEATCPNATFWATFGQSETSGLSTFAPYRDRP------- 320
Query: 148 LKSVPIGLPISNCDIVLVESD--TVKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKLHN 204
KS G P+ + +V+++ + P E GEI G + GY++ +
Sbjct: 321 -KSA--GRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWN----NAAA------ 367
Query: 205 NSICNCSVSCGSQT-------YFRTGDFARRIQSGDLVFLGR---KDRTIKINGQRMALE 254
T + TGD R G L + GR K+ IK G+ +
Sbjct: 368 -------------TQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKE-LIKTGGENVYPA 413
Query: 255 EIEHTLRGHPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLP 312
E+E L+ HP + D V V E + A V K ++ + ++ +V+S +
Sbjct: 414 EVEGALKQHPAIADAVVIGVPDPQWSEAI--KAVCVCKPGESIAA---DALAEFVASLI- 467
Query: 313 LAM--IPNRFVFMDSLPMTSSGKVD 335
A P VF+++LP + G +D
Sbjct: 468 -ARYKKPKHVVFVEALPKDAKGAID 491
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 5e-19
Identities = 67/323 (20%), Positives = 118/323 (36%), Gaps = 66/323 (20%)
Query: 29 LSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTT---VPSLMRVVL--PALQSQH 83
+ +++ P + K L ++R T VP+ +L P L
Sbjct: 216 NVTLFARGSMIFLPKFDPDK-------ILDL--MARATVLMGVPTFYTRLLQSPRLTK-- 264
Query: 84 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTY-FDCKRLPSI 142
++L + L S ++L YG TE + + + +D R+P
Sbjct: 265 --ETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTSNPYDGDRVPG- 320
Query: 143 LEMSTLKSVPIGLPISNCDIVLVESDT---VKPDE-GEIYAGGLCLSNGYF-----SEST 193
+V G + + + +T + + G I G + GY+ ++S
Sbjct: 321 -------AV--GPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSE 371
Query: 194 FMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMAL 253
F G +F TGD + + G + LGR + G +
Sbjct: 372 F-----------------RDDG---FFITGDLGKIDERGYVHILGRGKDLVITGGFNVYP 411
Query: 254 EEIEHTLRGHPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKL 311
+EIE + P VV++AV V H GE V A +V + T E + + + +L
Sbjct: 412 KEIESEIDAMPGVVESAVIGVPHADFGEGV--TAVVVRDKGATIDE---AQVLHGLDGQL 466
Query: 312 PLAMIPNRFVFMDSLPMTSSGKV 334
+P + +F+D LP + GKV
Sbjct: 467 AKFKMPKKVIFVDDLPRNTMGKV 489
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 9e-19
Identities = 60/267 (22%), Positives = 102/267 (38%), Gaps = 62/267 (23%)
Query: 89 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTY-FDCKRLPSILEMST 147
+ +LLV LP+ + I+ ++ YG TE + + D +
Sbjct: 272 AGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTETLMNTSVRADGEPRAG------ 324
Query: 148 LKSVPIGLPISNCDIVLVESDT---VKPDEGEIYAGGLCLS-----NGYFSESTFMPSEY 199
+V G+P+ ++ LVE D D + G + + Y + P
Sbjct: 325 --TV--GVPLPGVELRLVEEDGTPIAALDGESV--GEIQVRGPNLFTEYLN----RPDA- 373
Query: 200 VKLHNNSICNCSVSCGSQT--------YFRTGDFARRIQSGDLVFLGR--KDRTIKINGQ 249
T +FRTGD A R G + +GR D IK G
Sbjct: 374 ------------------TAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATD-LIKSGGY 414
Query: 250 RMALEEIEHTLRGHPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWV 307
++ EIE+ L HP+V + AV GE + VA+IV + ++ L ++ V
Sbjct: 415 KIGAGEIENALLEHPEVREAAVTGEPDPDLGERI--VAWIVPADP--AAPPALGTLADHV 470
Query: 308 SSKLPLAMIPNRFVFMDSLPMTSSGKV 334
+++L P ++D++P GK+
Sbjct: 471 AARLAPHKRPRVVRYLDAVPRNDMGKI 497
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 1e-18
Identities = 63/325 (19%), Positives = 113/325 (34%), Gaps = 64/325 (19%)
Query: 28 FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHV 87
++A+ T VV + +Q ++ L P+ + + A +
Sbjct: 215 LVAALALDGTYVVVEEFRPVD----ALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLK 270
Query: 88 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMST 147
SL+ + +G +P ++ + + + P +N+YG+TE + +
Sbjct: 271 LDSLRHVTFAGATMPDAVLETVHQHLP-GEKVNIYGTTEAMNSLYMRQ-PKTGTE----- 323
Query: 148 LKSVPIGLPISNCDIVLVESDT-----VKPDE-GEI-YAGGLCLSNGYFSESTFMPSEYV 200
P ++ +V V E GE+ A GY + P
Sbjct: 324 ------MAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLN----QPQA-- 371
Query: 201 KLHNNSICNCSVSCGSQT-------YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMAL 253
T ++RT D A G + LGR D I G+ +
Sbjct: 372 -----------------TAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHP 414
Query: 254 EEIEHTLRGHPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKL 311
EIE L P V + V ++ + G+ V A +V + +T S ++ ++ S
Sbjct: 415 SEIERVLGTAPGVTEVVVIGLADQRWGQSV--TACVVPRLGETLSA---DALDTFCRSSE 469
Query: 312 PLAM--IPNRFVFMDSLPMTSSGKV 334
LA P R+ +D LP + KV
Sbjct: 470 -LADFKRPKRYFILDQLPKNALNKV 493
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 1e-17
Identities = 69/295 (23%), Positives = 120/295 (40%), Gaps = 55/295 (18%)
Query: 57 LQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNI 116
Y ++ P++ R ++ S +N S+LK V++GE L +++ + I
Sbjct: 312 ASKYGVTTFCAPPTIYRFLIKEDLSHYNF---STLKYAVVAGEPLNPEVFNRFLEFT-GI 367
Query: 117 SILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPI-----GLPISNCDIVLVESD--T 169
++ +G TE + ++T + G P I L++ D
Sbjct: 368 KLMEGFGQTE----TV----------VTIATFPWMEPKPGSIGKPTPGYKIELMDRDGRL 413
Query: 170 VKP-DEGEI---YAGG--LCLSNGYFSESTFMPSEYVK-LHNNSICNCSVSCGSQTYFRT 222
+ +EGEI G + L Y + P + H+ Y+ T
Sbjct: 414 CEVGEEGEIVINTMEGKPVGLFVHYGKD----PERTEETWHDG-------------YYHT 456
Query: 223 GDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVS--HKHQGEL 280
GD A + G L F+GR D IK +G ++ E+E L HP V++ A+ +G++
Sbjct: 457 GDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQV 516
Query: 281 VILVAFIVLKEKKTSSEIFLSSIKSWVSSKL-PLAMIPNRFVFMDSLPMTSSGKV 334
+ A IVL + T S+ + ++ V + P P F+ LP T SGK+
Sbjct: 517 I--KATIVLTKDYTPSDSLKNELQDHVKNVTAPYKY-PRIIEFVPELPKTISGKI 568
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 85.6 bits (213), Expect = 2e-17
Identities = 74/331 (22%), Positives = 131/331 (39%), Gaps = 68/331 (20%)
Query: 30 SAILTACTLVVP-PIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVP 88
+A L V+P P ++ S++ ++ VP++ + L+S H
Sbjct: 239 AATLVGAKQVLPGPRLDPA----SLVELFDGEGVTFTAGVPTVWLALADYLESTG--HRL 292
Query: 89 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 148
+L+ LV+ G P S+ ++ + + YG TE S + +S
Sbjct: 293 KTLRRLVVGGSAAPRSLIARFERM--GVEVRQGYGLTETSPVVVQ--NFVKSHLESLSEE 348
Query: 149 KSVPI----GLPISNCDIVLVESDT--VKPD---EGEIYAGGLCLSNGYF-----SESTF 194
+ + + GLPI + + + + V D GE+ G ++ GY+ + S
Sbjct: 349 EKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSAL 408
Query: 195 MPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT---IKINGQRM 251
P G +FRTGD A + G ++ KDR IK G
Sbjct: 409 TPD-----------------G---FFRTGDIAVWDEEG---YVEIKDRLKDLIKSGG--- 442
Query: 252 ALE-----EIEHTLRGHPDVVDTAVVSHKHQ--GELVILVAFIVLKEKKTSSEIFLSSIK 304
E ++E+ L GHP V + AVV+ H E +A +V + +K + E +
Sbjct: 443 --EWISSVDLENALMGHPKVKEAAVVAIPHPKWQERP--LAVVVPRGEKPTPE---ELNE 495
Query: 305 SWVSSKLPLAMIPNRFVFMDSLPMTSSGKVD 335
+ + +P+ +VF + +P TS+GK
Sbjct: 496 HLLKAGFAKWQLPDAYVFAEEIPRTSAGKFL 526
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 1e-16
Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 17/130 (13%)
Query: 217 QTYFR-------TGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDT 269
QTYF +GD ARR + G GR D + ++G R+ EIE L HP + +
Sbjct: 486 QTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEA 545
Query: 270 AVVSHKH----QGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKL-PLAMIPNRFVFMD 324
AVV H Q + A++ L + S + +++WV ++ PLA P+ + D
Sbjct: 546 AVVGIPHAIKGQA----IYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLA-TPDVLHWTD 600
Query: 325 SLPMTSSGKV 334
SLP T SGK+
Sbjct: 601 SLPKTRSGKI 610
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 8e-15
Identities = 40/137 (29%), Positives = 58/137 (42%), Gaps = 24/137 (17%)
Query: 217 QTYFR-------TGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDT 269
TY TGD A + + G + LGR D + ++G R++ EIE + P V +
Sbjct: 495 DTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAEC 554
Query: 270 AVVSHKH----QGELVILVAFIVLKEKKTSSEIFLSS-------IKSWVSSKL-PLAMIP 317
AVV Q + AF+VLK K + S + V + P A P
Sbjct: 555 AVVGFNDDLTGQA----VAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFA-AP 609
Query: 318 NRFVFMDSLPMTSSGKV 334
+ +D LP T SGK+
Sbjct: 610 KLIILVDDLPKTRSGKI 626
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 4e-12
Identities = 38/198 (19%), Positives = 69/198 (34%), Gaps = 29/198 (14%)
Query: 151 VPIGLPISNCDIVLVESDTVKPD--EGEIYAGGLCLSNGYF-----SESTFMPSEYVKLH 203
V G PI I+ ++ GEI+ ++ GY+ + F
Sbjct: 374 VSSGNPIQEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAF--------- 424
Query: 204 NNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGH 263
I + S Y RTGD + +L GR I I G+ ++IE +L
Sbjct: 425 AGKIKD---DERSAIYLRTGDLGF-LHENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHS 480
Query: 264 PDVV---DTAVVSHKHQG-ELVILVAFIVLKE-KKTSSEIFLSSIKSWVSSKLPLAMIPN 318
P A + + + ++ + + + + + I V L +
Sbjct: 481 PLHHVLGKCAAFVIQEEHEYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLE--VH 538
Query: 319 RFVFMD--SLPMTSSGKV 334
V + ++P T+SGK+
Sbjct: 539 TIVLIPLKAMPHTTSGKI 556
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Length = 276 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 1e-07
Identities = 28/206 (13%), Positives = 64/206 (31%), Gaps = 13/206 (6%)
Query: 602 VVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY 661
+V G KI ++ T +I W + +C V I S+ + R+
Sbjct: 8 LVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMIT-RDG 65
Query: 662 RCV--YKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLH---ELEVP 716
R + P G + + + + + ++ + +++K E
Sbjct: 66 RELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHA 125
Query: 717 AFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALP--SQVLI 774
F + +++ V + +G ++ + G P +S L ++
Sbjct: 126 QFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVKLSG----TPFSSAFLDNGDCLVA 181
Query: 775 CSRNGSIYSFEQESGNLLWEYSVGDP 800
C ES ++ + D
Sbjct: 182 CGDAHCFVQLNLESNRIVRRVNANDI 207
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 1e-05
Identities = 95/570 (16%), Positives = 172/570 (30%), Gaps = 160/570 (28%)
Query: 134 FDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNG-----Y 188
FDCK + +M KS+ L D +++ D G + LS
Sbjct: 33 FDCK---DVQDM--PKSI---LSKEEIDHIIMSKD---AVSGTLRLFWTLLSKQEEMVQK 81
Query: 189 FSESTFMPSEY----VKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVF----LGRK 240
F E Y + S ++ Y D R+ + + VF + R
Sbjct: 82 FVEEVLRI-NYKFLMSPIKTEQR---QPSMMTRMYIEQRD---RLYNDNQVFAKYNVSRL 134
Query: 241 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGE----LVILVAFIVLKEKKTSS 296
+K+ R AL E LR +V+ + G + + V + K
Sbjct: 135 QPYLKL---RQALLE----LRPAKNVL----I-DGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 297 EIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADET 356
+IF ++K+ S + L M+ +D ++ S S +S H
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDP---------NWTSRSDHSSNIKLRIHSIQAE 233
Query: 357 KASDLLQVIRKAFGHALMV------EEVLHHDNFFTMG------------GNSIAAAHVA 398
LL+ K + + L+V + N F + + ++AA
Sbjct: 234 L-RRLLK--SKPYENCLLVLLNVQNAKAW---NAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 399 HNLGIDMRLIYNFPTPSKLEIALLEKKGLCNLDVSAD---------ANWKLNL--EEDKE 447
H + TP +++ +LL K LD +L++ E ++
Sbjct: 288 HISLDHHSMTL---TPDEVK-SLLLKY----LDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 448 HQFHSGYSRTENHAVVSKRLKVNSTKYFKPELHHH---------KD-GLP-------WN- 489
+ N ++ ++ S +P + +P W
Sbjct: 340 GLATWDNWKHVNCDKLTTIIES-SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 490 -LSSVPMS-----CSFSRCNKVMHEEKIRGNDLCGVNWSLEVPRNKRGFIQELWKVHMES 543
+ S M +S K E I + LE+ ++ + +H S
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-----YLELKVK----LENEYALH-RS 448
Query: 544 CVDA----------SPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKL-----EGR 588
VD + D Y +G H +R ++ + L E +
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN--IEHPERMTLFRMVFLDFRFLEQK 506
Query: 589 IE-------CSAAVLADFSQVVVGCYKGKI 611
I S ++L Q+ YK I
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKF--YKPYI 534
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* Length = 599 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 1e-05
Identities = 17/137 (12%), Positives = 44/137 (32%), Gaps = 10/137 (7%)
Query: 670 GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRH 729
G G + D ++ ++ + + + + N
Sbjct: 391 GYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYE 450
Query: 730 VICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGP-CTSFALPSQVLICSRNGSIYSFEQE 787
+ G + A + +G W ++ G T+ L V + +G + + + +
Sbjct: 451 GL-----GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDL---VFYGTLDGYLKARDSD 502
Query: 788 SGNLLWEYSVGDPITAS 804
+G+LLW++ +
Sbjct: 503 TGDLLWKFKIPSGAIGY 519
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 2e-05
Identities = 38/185 (20%), Positives = 60/185 (32%), Gaps = 42/185 (22%)
Query: 53 IIHFLQAYSISRLTTVPSLMRVVL--PALQSQHNMHVPSSLKLLVLSGEVLPLSMWD-II 109
+ + L I L T P ++R +L P + + SL + L G L L I
Sbjct: 197 VQNTLMNQDIRFLVTTPPVLRELLKRPEVVL----QMKQSLAQITLGGTELNLDEIKFIA 252
Query: 110 SKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDT 169
S++ P+ YGST G S+L S + V +V+S T
Sbjct: 253 SEILPDCEFSASYGSTSALGVS--------RSLLITSESQQVIYDSFSPFITYDVVDSIT 304
Query: 170 VKP-DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARR 228
+ + GE G + +++ S F P D A R
Sbjct: 305 AQTVEYGER--GNVIVTH--LSPWAFYPR----------------------VAERDTAIR 338
Query: 229 IQSGD 233
+
Sbjct: 339 LPGVS 343
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 45/300 (15%), Positives = 92/300 (30%), Gaps = 64/300 (21%)
Query: 54 IHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLF 113
+ ++ + + PS M ++ + Q SSLK+ + E ++ + +
Sbjct: 177 VQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV 236
Query: 114 PNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE---SDTV 170
I L++YG +EV G +C + D E T
Sbjct: 237 -GIDALDIYGLSEVMGPGVACECVETKDGPVIWE-------------DHFYPEIIDPVTG 282
Query: 171 KP-DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFAR-- 227
+ +G G L ++ E+ MP + +RT D
Sbjct: 283 EVLPDGSQ--GELVFTS-LTKEA--MP-----VIR---------------YRTRDLTALL 317
Query: 228 --------RIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTA--VVSHK-H 276
R+ GR D + + G + +IE + P + +S H
Sbjct: 318 PPTARAMRRLAK----ITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGH 373
Query: 277 QGELVILV---AFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGK 333
L + V + ++ + + + ++ + +P T++GK
Sbjct: 374 MDRLDLAVELRSEAAASVTDGERAALARELQHRIKTMVGVSSGV-TVLAAGGIPATATGK 432
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} Length = 339 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 4e-05
Identities = 32/234 (13%), Positives = 65/234 (27%), Gaps = 34/234 (14%)
Query: 559 YLFVGSHSHKFICADAKRSSVLWEIKLEG-----RIECSAAVLADFSQVVVGCYKGKIYF 613
L D + ++W I+ E I+ + + + ++ G IY+
Sbjct: 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYY 71
Query: 614 LDYLTGDIYWTFQTCGEVKCQPVVDAPRQL------------IWCGSHDHNLYALDFRNY 661
+ G V P+ + ++ GS +Y ++ N
Sbjct: 72 FNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNG 131
Query: 662 RCVYKLPCGGSIFGSPA------------IDEVHDVLYVASTSGRLTAISVKALPFH--- 706
+ G + + E +++ + T L S ++
Sbjct: 132 EIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHSYDGASYNVTY 191
Query: 707 TLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT-GGPI 758
+ W + A S + I D ++A D W T G I
Sbjct: 192 STWQQNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFRIARWVSPTFPGII 245
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} Length = 339 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 2e-04
Identities = 24/225 (10%), Positives = 64/225 (28%), Gaps = 32/225 (14%)
Query: 602 VVVGCYKGKIYFLDYLTGDIYWTFQT-----CGEVKCQPVVDAPRQLIWCGSHDHNLYAL 656
++ +G ++ +D G I W+ + E++ ++ LI D N+Y
Sbjct: 13 LIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYF 72
Query: 657 D---------FRNYRCVYKLPC---GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALP 704
+ + V P + + +Y S + I++
Sbjct: 73 NAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE 132
Query: 705 FHTLWLHELEVPAFASLCITSANRHVICCLVDGHV---------VALDSSGSIIWRCRTG 755
+ + + F S + + I ++ + + S +
Sbjct: 133 IISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHSYDGASYNVTYS 192
Query: 756 ------GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWE 794
+ +F+ + R+ S+ + + + W
Sbjct: 193 TWQQNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFRIARWV 237
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 Length = 582 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 4e-05
Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 35/147 (23%)
Query: 682 VHDVLYVASTSGRLTAISVKALPFHT---LWLHELEVPAFASLCITSANRHVICC----- 733
V+YV ++ RL A+ K T LW + +P C NR
Sbjct: 67 SDGVIYVTASYSRLFALDAK-----TGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVF 121
Query: 734 --LVDGHVVALD-SSGSIIWR----------CRTGGPIFAGPCTSFALPSQVLICSR--- 777
+D VVAL+ ++G ++W+ TG P + ++ S
Sbjct: 122 FGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTG--KVLLIHGSSGDE 179
Query: 778 ---NGSIYSFEQESGNLLWE-YSVGDP 800
G +++ + ++G +W V
Sbjct: 180 FGVVGRLFARDPDTGEEIWMRPFVEGH 206
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} Length = 689 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 24/164 (14%), Positives = 51/164 (31%), Gaps = 37/164 (22%)
Query: 663 CVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHT---LWLHELEVP--A 717
YKL + +P + V V+Y + A+ + +W ++ +
Sbjct: 52 WSYKLDLDRGVEATPIV--VDGVMYTTGPFSVVYALDAR-----DGRLIWKYDPQSDRHR 104
Query: 718 FASLCITSANRH-------VICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALP 769
C + NR V ++DG + A+D +G W T + +
Sbjct: 105 AGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRS----YTIT 160
Query: 770 SQVLICSRN-------------GSIYSFEQESGNLLWEYSVGDP 800
+ + G + +++ E+G W +
Sbjct: 161 GAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPG 204
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 Length = 668 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 1e-04
Identities = 28/163 (17%), Positives = 57/163 (34%), Gaps = 38/163 (23%)
Query: 664 VYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHT---LWLHELEVP--AF 718
L + +P V+Y + + R+ A+ + LW ++ EV
Sbjct: 49 YMDLDNTRGLEATPLF--HDGVIYTSMSWSRVIAVDAA-----SGKELWRYDPEVAKVKA 101
Query: 719 ASLCITSANRHVICC-------LVDGHVVALDS-SGSIIWRCRTGGPIFAGPCTSFALPS 770
+ C + NR V +DG ++ALD+ +G IW +T P +++
Sbjct: 102 RTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPA-----KPYSITG 156
Query: 771 QVLICSR-------------NGSIYSFEQESGNLLWEYSVGDP 800
+ G + +++ ++G L W +
Sbjct: 157 APRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPG 199
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 Length = 677 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 2e-04
Identities = 33/161 (20%), Positives = 59/161 (36%), Gaps = 32/161 (19%)
Query: 664 VYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHT---LWLHELEVP--AF 718
Y L + +P + V ++YV+++ + AI + T +W ++ ++
Sbjct: 60 SYNLESTRGVEATPVV--VDGIMYVSASWSVVHAIDTR-----TGNRIWTYDPQIDRSTG 112
Query: 719 ASLCITSANR-------HVICCLVDGHVVALDS-SGSIIWRCRTGGPIFAGPCTSFALP- 769
C NR V DG ++ALD+ +G +W T G T P
Sbjct: 113 FKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNT-FEGQKGSLTITGAPR 171
Query: 770 --SQVLICSRN-------GSIYSFEQESGNLLWE-YSVGDP 800
+I G I +++ E+G W +SV
Sbjct: 172 VFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGD 212
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 Length = 677 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 4e-04
Identities = 24/199 (12%), Positives = 52/199 (26%), Gaps = 15/199 (7%)
Query: 609 GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLP 668
G + LD G + A D + P
Sbjct: 337 GFFFVLDRTNGKFISAKN----FVPVNWASGYDKHGK---PIGIAAARDGSKPQDAVPGP 389
Query: 669 CGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANR 728
G + + + ++Y+ + + + + + +
Sbjct: 390 YGAHNWHPMSFNPQTGLVYLPAQ--NVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFN 447
Query: 729 HVICCLVD-GHVVALD-SSGSIIWRCRTGGPIFAGP-CTSFALPSQVLICSRNGSIYSFE 785
G ++A D + W P G T+ + V + +G + ++
Sbjct: 448 AEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNV---VFQGTADGRLVAYH 504
Query: 786 QESGNLLWEYSVGDPITAS 804
+G LWE G + A+
Sbjct: 505 AATGEKLWEAPTGTGVVAA 523
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 44/272 (16%), Positives = 87/272 (31%), Gaps = 57/272 (20%)
Query: 54 IHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLF 113
+ +Q + + PS M + ++ Q V SSL++ + E M I +
Sbjct: 175 VQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM 234
Query: 114 PNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE---SDTV 170
I +++YG +EV G +C + D E +T
Sbjct: 235 -GIDAVDIYGLSEVMGPGVASECVETKDGPTIWE-------------DHFYPEIIDPETG 280
Query: 171 KP-DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFAR-- 227
+ +GE+ G L ++ E+ +P + +RT D R
Sbjct: 281 EVLPDGEL--GELVFTS-LTKEA--LP-----IIR---------------YRTRDLTRLL 315
Query: 228 --------RIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGE 279
R++ GR D + + G + +IE L + + +G
Sbjct: 316 PGTARTMRRMEK----ITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGP 371
Query: 280 LVILVAFIVLKEKKTSSEIFLSSIKSWVSSKL 311
L +L + + + K ++ +
Sbjct: 372 LDVLTLNVEPCPETAPDTAAIQVAKQALAYDI 403
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* Length = 571 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 3e-04
Identities = 32/200 (16%), Positives = 66/200 (33%), Gaps = 67/200 (33%)
Query: 623 WTFQT--CGEVKCQP-VVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAI 679
W+F T + P V+ + + +N YAL+
Sbjct: 44 WSFSTGVLNGHEGAPLVIG--DMMYVHSAFPNNTYALN---------------------- 79
Query: 680 DEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAF--ASLCITSANR-------HV 730
+ G++ +W H+ + A A +C +R +
Sbjct: 80 ---------LNDPGKI------------VWQHKPKQDASTKAVMCCDVVDRGLAYGAGQI 118
Query: 731 ICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQ-VLICSRNGS-------I 781
+ +GH++ALD +G I W P T ++ ++ +G+ +
Sbjct: 119 VKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAV 178
Query: 782 YSFEQESGNLLWE-YSVGDP 800
+F+ ++G L W ++ G
Sbjct: 179 NAFDLKTGELKWRAFATGSD 198
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* Length = 571 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 4e-04
Identities = 19/143 (13%), Positives = 38/143 (26%), Gaps = 12/143 (8%)
Query: 664 VYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCI 723
+ G G + D LY + + + +
Sbjct: 378 ICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNG 437
Query: 724 TSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGP-CTSFALPSQVLICSRNGSI 781
+ G + A D ++G W + G T L V + +G +
Sbjct: 438 PTKKEM-------GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGL---VWYATLDGYL 487
Query: 782 YSFEQESGNLLWEYSVGDPITAS 804
+ + + G LW + + S
Sbjct: 488 KALDNKDGKELWNFKMPSGGIGS 510
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 900 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 2e-57 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 2e-49 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 1e-43 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 6e-41 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 9e-40 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 9e-32 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 4e-31 | |
| d2ad6a1 | 571 | b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy c | 4e-08 | |
| d2ad6a1 | 571 | b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy c | 9e-07 | |
| d2ad6a1 | 571 | b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy c | 4e-05 | |
| d2ad6a1 | 571 | b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy c | 0.004 | |
| d1flga_ | 582 | b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas a | 7e-07 | |
| d1flga_ | 582 | b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas a | 1e-06 | |
| d1flga_ | 582 | b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas a | 2e-05 | |
| d1flga_ | 582 | b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas a | 0.003 | |
| d1kv9a2 | 560 | b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogen | 1e-06 | |
| d1kv9a2 | 560 | b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogen | 5e-05 | |
| d1kv9a2 | 560 | b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogen | 4e-04 | |
| d1kb0a2 | 573 | b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogen | 3e-06 | |
| d1kb0a2 | 573 | b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogen | 4e-06 | |
| d1kb0a2 | 573 | b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogen | 3e-04 | |
| d1w6sa_ | 596 | b.70.1.1 (A:) Methanol dehydrogenase, heavy chain | 7e-06 | |
| d1w6sa_ | 596 | b.70.1.1 (A:) Methanol dehydrogenase, heavy chain | 9e-06 | |
| d1w6sa_ | 596 | b.70.1.1 (A:) Methanol dehydrogenase, heavy chain | 5e-04 | |
| d1w6sa_ | 596 | b.70.1.1 (A:) Methanol dehydrogenase, heavy chain | 0.001 | |
| d2gdwa1 | 76 | a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), | 2e-04 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 207 bits (527), Expect = 2e-57
Identities = 63/347 (18%), Positives = 124/347 (35%), Gaps = 28/347 (8%)
Query: 1 MQDLYPLHGEELLLFKTSISFID-HLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQA 59
+ ++ H ++ + ++ H + T ++ + + +
Sbjct: 285 FKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDK 344
Query: 60 YSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLF--PNIS 117
+ ++ L T P+ +R ++ SSL++L GE + W+ K
Sbjct: 345 HQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCP 404
Query: 118 ILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDT--VKPDE- 174
+++ + TE G + LK+ P LV+++ +
Sbjct: 405 VVDTWWQTETGGFMITPLPGAIE-------LKAGSATRPFFGVQPALVDNEGHPQEGATE 457
Query: 175 GEIYAGGLC--LSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSG 232
G + + F + Y N + +GD ARR + G
Sbjct: 458 GNLVITDSWPGQARTLFGDHERFEQTYFSTFKN-------------MYFSGDGARRDEDG 504
Query: 233 DLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEK 292
GR D + ++G R+ EIE L HP + + AVV H + + A++ L
Sbjct: 505 YYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHG 564
Query: 293 KTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASL 339
+ S + +++WV ++ P+ + DSLP T SGK+ L
Sbjct: 565 EEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRIL 611
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 183 bits (465), Expect = 2e-49
Identities = 73/352 (20%), Positives = 126/352 (35%), Gaps = 28/352 (7%)
Query: 1 MQDLYPLHGEELLLFKTSISFID-HLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQA 59
M+ + H E++ I +I H +L C +V N +
Sbjct: 272 MRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDE 331
Query: 60 YSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPN--IS 117
+ +++ P+ +R++ A S H SL+ L GE + +W+ S+ I
Sbjct: 332 HKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIP 391
Query: 118 ILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDT---VKPDE 174
I++ Y TE P ++ +K P D V+++ +T +
Sbjct: 392 IVDTYWQTESGSHLVT------PLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSH 445
Query: 175 GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDL 234
E + Y+ + N Y+ TGD A + + G +
Sbjct: 446 AEGVLAVKAAWPSFARTIWKNHDRYLDTYLN---------PYPGYYFTGDGAAKDKDGYI 496
Query: 235 VFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKT 294
LGR D + ++G R++ EIE + P V + AVV + AF+VLK K +
Sbjct: 497 WILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSS 556
Query: 295 SSEI-------FLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASL 339
S + V + P + +D LP T SGK+ L
Sbjct: 557 WSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRIL 608
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 164 bits (415), Expect = 1e-43
Identities = 71/346 (20%), Positives = 132/346 (38%), Gaps = 32/346 (9%)
Query: 1 MQDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAY 60
+ D L ++++L + ++ +A L V+P + S++
Sbjct: 203 LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPR---LDPASLVELFDGE 259
Query: 61 SISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILN 120
++ VP++ + + H +L+ LV+ G P S+ ++ + +
Sbjct: 260 GVTFTAGVPTVWLALADY--LESTGHRLKTLRRLVVGGSAAPRSLIARFERM--GVEVRQ 315
Query: 121 LYGSTEVSGDCTYFDCKRLPSIL--EMSTLKSVPIGLPISNCDIVLVESDT--VKPDE-- 174
YG TE S K L E GLPI + + + + V D
Sbjct: 316 GYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKA 375
Query: 175 -GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGD 233
GE+ G ++ GY+ S +FRTGD A + G
Sbjct: 376 LGEVQLKGPWITGGYYGNEEATRSALTP---------------DGFFRTGDIAVWDEEGY 420
Query: 234 LVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKK 293
+ R IK G+ ++ ++E+ L GHP V + AVV+ H +A +V + +K
Sbjct: 421 VEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEK 480
Query: 294 TSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASL 339
+ E + + + +P+ +VF + +P TS+GK +L
Sbjct: 481 PTPE---ELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRAL 523
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 156 bits (395), Expect = 6e-41
Identities = 64/321 (19%), Positives = 114/321 (35%), Gaps = 34/321 (10%)
Query: 24 HLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQH 83
H + L ++ + + LQ Y I VP+L + +
Sbjct: 241 HHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKS--TLI 298
Query: 84 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSIL 143
+ + S+L + G L + + ++K F I YG TE + I
Sbjct: 299 DKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL---------IT 349
Query: 144 EMSTLKSVPIGLPISNCDIVLVESDTVKP----DEGEIYAGGLCLSNGYFSESTFMPSEY 199
K +G + + +V+ DT K GE+ G + +GY + +
Sbjct: 350 PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALI 409
Query: 200 VKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHT 259
K + +GD A + + R IK G ++A E+E
Sbjct: 410 DK---------------DGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 454
Query: 260 LRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKL-PLAMIPN 318
L HP++ D V + A +VL+ KT +E I +V+S++ +
Sbjct: 455 LLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTE---KEIVDYVASQVTTAKKLRG 511
Query: 319 RFVFMDSLPMTSSGKVDYASL 339
VF+D +P +GK+D +
Sbjct: 512 GVVFVDEVPKGLTGKLDARKI 532
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 152 bits (384), Expect = 9e-40
Identities = 74/261 (28%), Positives = 124/261 (47%), Gaps = 26/261 (9%)
Query: 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPS 141
+ S++ L+ +G S+ + K ++ +N YG TE + T +
Sbjct: 270 HLDPERILSIQTLITAGSATSPSLVN---KWKEKVTYINAYGPTETTICATTWVAT---- 322
Query: 142 ILEMSTLKSVPIGLPISNCDIVLVESDT--VKPDE-GEIYAGGLCLSNGYFSESTFMPSE 198
+ + SVPIG PI N I +V+ + E GE+ GG L+ GY+ +
Sbjct: 323 --KETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQK 380
Query: 199 YVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEH 258
+V + + ++TGD AR + G++ +LGR D +KI G R+ LEE+E
Sbjct: 381 FVD---------NPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVES 431
Query: 259 TLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 318
L H + +TAV HK E L A+ V ++ + ++ + S +LP MIP+
Sbjct: 432 ILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQ-----LRQFSSEELPTYMIPS 486
Query: 319 RFVFMDSLPMTSSGKVDYASL 339
F+ +D +P+TS+GK+D L
Sbjct: 487 YFIQLDKMPLTSNGKIDRKQL 507
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 128 bits (321), Expect = 9e-32
Identities = 56/288 (19%), Positives = 102/288 (35%), Gaps = 26/288 (9%)
Query: 53 IIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKL 112
+ +Q ++ L P+ + + A + SL+ + +G +P ++ + + +
Sbjct: 236 ALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQH 295
Query: 113 FPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKP 172
P +N+YG+TE K T + G + +
Sbjct: 296 LPG-EKVNIYGTTEAMNSLYMRQPK---------TGTEMAPGFFSEVRIVRIGGGVDEIV 345
Query: 173 DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSG 232
GE + S+ F P + + ++RT D A G
Sbjct: 346 ANGEEGELIVAASDSAFVGYLNQPQATAEKLQD------------GWYRTSDVAVWTPEG 393
Query: 233 DLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEK 292
+ LGR D I G+ + EIE L P V + V+ Q + A +V +
Sbjct: 394 TVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLG 453
Query: 293 KTSSEIFLSSIKSWV-SSKLPLAMIPNRFVFMDSLPMTSSGKVDYASL 339
+T S ++ ++ SS+L P R+ +D LP + KV L
Sbjct: 454 ETLSA---DALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQL 498
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 127 bits (318), Expect = 4e-31
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 33/262 (12%)
Query: 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSI 142
SSL++L + G + +F + + D + +
Sbjct: 292 SRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEI--- 348
Query: 143 LEMSTLKSVPIGLPISNCDIVLVESDTVKP----DEGEIYAGGLCLSNGYFSESTFMPSE 198
G P+S D V D + + G + G GY+
Sbjct: 349 ------IVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYY--------- 393
Query: 199 YVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEH 258
+ + + S ++RTGD R + G +V GR I G+++A EE+E+
Sbjct: 394 ------KAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVEN 447
Query: 259 TLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK-LPLAMIP 317
L HP V D A+VS Q FI+ +++ + +K+++ + L IP
Sbjct: 448 HLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAA----ELKAFLRERGLAAYKIP 503
Query: 318 NRFVFMDSLPMTSSGKVDYASL 339
+R F++S P T GKV +L
Sbjct: 504 DRVEFVESFPQTGVGKVSKKAL 525
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 571 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 54.6 bits (130), Expect = 4e-08
Identities = 25/203 (12%), Positives = 50/203 (24%), Gaps = 13/203 (6%)
Query: 603 VVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR 662
G +Y L+ G++ + V VD D
Sbjct: 320 SHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPV---RDPEFATRMDHKGT 376
Query: 663 CVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLC 722
+ G G + D LY + + + +
Sbjct: 377 NICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPN 436
Query: 723 ITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSI 781
+ G + A D ++G W + G + V + +G +
Sbjct: 437 GPTKKEM-------GQIRAFDLTTGKAKWTKWEKFAAWGGTLYT--KGGLVWYATLDGYL 487
Query: 782 YSFEQESGNLLWEYSVGDPITAS 804
+ + + G LW + + S
Sbjct: 488 KALDNKDGKELWNFKMPSGGIGS 510
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 571 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 50.3 bits (119), Expect = 9e-07
Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 1/85 (1%)
Query: 609 GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLP 668
G+I D TG WT + L+W + D L ALD ++ + ++
Sbjct: 444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKG-GLVWYATLDGYLKALDNKDGKELWNFK 502
Query: 669 CGGSIFGSPAIDEVHDVLYVASTSG 693
GSP Y+ S G
Sbjct: 503 MPSGGIGSPMTYSFKGKQYIGSMYG 527
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 571 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 44.9 bits (105), Expect = 4e-05
Identities = 31/198 (15%), Positives = 57/198 (28%), Gaps = 25/198 (12%)
Query: 623 WTFQT--CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCV---YKLPCGGSIFGSP 677
W+F T + P+V + + +N YAL+ + + +K S
Sbjct: 44 WSFSTGVLNGHEGAPLV-IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVM 102
Query: 678 AIDEVH-------DVLYVASTSGRLTAI-SVKALPFHTLWLHELEVPAFASLCITSANRH 729
D V + +G L A+ + + + + +V + + A
Sbjct: 103 CCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDT 162
Query: 730 VI------CCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIY 782
V+ V G V A D +G + WR G + G
Sbjct: 163 VLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGS----DDSVRLAKDFNSANPHYGQFG 218
Query: 783 SFEQESGNLLWEYSVGDP 800
+ W+ G
Sbjct: 219 LGTKTWEGDAWKIGGGTN 236
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 571 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 38.4 bits (88), Expect = 0.004
Identities = 45/303 (14%), Positives = 80/303 (26%), Gaps = 44/303 (14%)
Query: 547 ASPLVVLKDSDIYLFVGSHSHKFICADAKRS-SVLWEIKLEGRIECSAAVLADFSQVVVG 605
+PLV+ +Y + + + ++W+ K + A + D +
Sbjct: 56 GAPLVI--GDMMY-VHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLA 112
Query: 606 CYKGKIYF---------LDYLTGDIYWTFQTCGEVKC-----QPVVDAPRQLIWCGSHDH 651
G+I LD TG I W + C P V L+ C +
Sbjct: 113 YGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAEL 172
Query: 652 ----NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFH- 706
+ A D + ++ GS + + G T
Sbjct: 173 GVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIG 232
Query: 707 --TLWLHELEVPAFASLCITSAN--------RHVICCLVDGHVVALDSSGSIIWRCRTGG 756
T W P S N R +G W +
Sbjct: 233 GGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTP 292
Query: 757 -----------PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASA 805
+ + + + RNG +Y+ +E+GNL+ V +
Sbjct: 293 HDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352
Query: 806 YID 808
+D
Sbjct: 353 KVD 355
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 582 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 50.3 bits (119), Expect = 7e-07
Identities = 32/210 (15%), Positives = 63/210 (30%), Gaps = 23/210 (10%)
Query: 602 VVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAP------RQLIWCGSHDHNLYA 655
G Y +D G + F + +D R+ +
Sbjct: 339 TAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKH 398
Query: 656 LDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV 715
+ GG + A + + YV + W E+
Sbjct: 399 GKAVEVSPPFL---GGKNWNPMAYSQDTGLFYVPANH-----------WKEDYWTEEVSY 444
Query: 716 PAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLI 774
++ + G + A+D SG ++W + P++AG + V
Sbjct: 445 TKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLA--TAGNLVFT 502
Query: 775 CSRNGSIYSFEQESGNLLWEYSVGDPITAS 804
+ +G +F+ +SG LW++ G I +
Sbjct: 503 GTGDGYFKAFDAKSGKELWKFQTGSGIVSP 532
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 582 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 50.0 bits (118), Expect = 1e-06
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Query: 607 YKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYK 666
+ G + +D ++G + W + + + A L++ G+ D A D ++ + ++K
Sbjct: 464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGN-LVFTGTGDGYFKAFDAKSGKELWK 522
Query: 667 LPCGGSIFGSPAIDEVHDVLYVASTSG 693
G I P E Y+ T G
Sbjct: 523 FQTGSGIVSPPITWEQDGEQYLGVTVG 549
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 582 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 45.7 bits (107), Expect = 2e-05
Identities = 32/202 (15%), Positives = 56/202 (27%), Gaps = 20/202 (9%)
Query: 569 FICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC 628
F D + I A D +G+ L +
Sbjct: 348 FYVVDRSNGKLQNAFPFVDNITW--ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVS 405
Query: 629 -----GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVH 683
G+ L + ++ G D+
Sbjct: 406 PPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHV 465
Query: 684 DVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD 743
G L A+ + +W H+ +P +A + + +A V DG+ A D
Sbjct: 466 ---------GSLRAMDPVSGK--VVWEHKEHLPLWAGV-LATAGNLVFTGTGDGYFKAFD 513
Query: 744 S-SGSIIWRCRTGGPIFAGPCT 764
+ SG +W+ +TG I + P T
Sbjct: 514 AKSGKELWKFQTGSGIVSPPIT 535
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 582 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 38.8 bits (89), Expect = 0.003
Identities = 26/142 (18%), Positives = 48/142 (33%), Gaps = 26/142 (18%)
Query: 675 GSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANR------ 728
+ V+YV ++ RL A+ A LW + +P C NR
Sbjct: 62 SQAIV--SDGVIYVTASYSRLFALD--AKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYG 117
Query: 729 -HVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSF-------ALPSQVLI------ 774
V +D VVAL+ + + + AG + +VL+
Sbjct: 118 DKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSG 177
Query: 775 --CSRNGSIYSFEQESGNLLWE 794
G +++ + ++G +W
Sbjct: 178 DEFGVVGRLFARDPDTGEEIWM 199
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Length = 560 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Score = 49.6 bits (117), Expect = 1e-06
Identities = 36/213 (16%), Positives = 68/213 (31%), Gaps = 23/213 (10%)
Query: 602 VVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY 661
++ G Y LD G + + G+V VD G +
Sbjct: 317 LMQAPKNGFFYVLDRTNGKLISAEKF-GKVTWAEKVDLAT-----GRPVEAPGVRYEKEP 370
Query: 662 RCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVP--AFA 719
++ P G + S + + ++Y I + +P + V AF
Sbjct: 371 IVMWPSPFGAHNWHSMSFNPGTGLVY----------IPYQEVPGVYRNEGKDFVTRKAFN 420
Query: 720 SLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGP-CTSFALPSQVLICSR 777
+ + V +V G ++A D W+ G T+ L V +
Sbjct: 421 TAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNL---VFQGTA 477
Query: 778 NGSIYSFEQESGNLLWEYSVGDPITASAYIDEH 810
G ++++ + G LW++ I A+ E
Sbjct: 478 AGQMHAYSADKGEALWQFEAQSGIVAAPMTFEL 510
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Length = 560 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Score = 44.6 bits (104), Expect = 5e-05
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 1/85 (1%)
Query: 609 GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLP 668
G + D + W + A L++ G+ ++A +++
Sbjct: 438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGN-LVFQGTAAGQMHAYSADKGEALWQFE 496
Query: 669 CGGSIFGSPAIDEVHDVLYVASTSG 693
I +P E+ YVA +G
Sbjct: 497 AQSGIVAAPMTFELAGRQYVAIMAG 521
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Length = 560 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Score = 41.5 bits (96), Expect = 4e-04
Identities = 33/171 (19%), Positives = 56/171 (32%), Gaps = 24/171 (14%)
Query: 534 QELWKVHMESC--VDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWE-----IKLE 586
W + +++ ++A+PL D ++ + I DA LW K++
Sbjct: 45 GLAWYMDLDNTRGLEATPLFH----DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVK 100
Query: 587 GRIECSAAVLADFS----QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC------QPV 636
R C AV + +V VG G++ LD TG W+ QT K V
Sbjct: 101 ARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV 160
Query: 637 VDAPRQLIWCGSHDH---NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHD 684
V + G+ + A D + ++ P
Sbjct: 161 VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELR 211
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Length = 573 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Score = 48.4 bits (114), Expect = 3e-06
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
Query: 609 GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLP 668
G++ D + W+ + + A +++ G+ D L A +++ P
Sbjct: 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGN-VVFQGTADGRLVAYHAATGEKLWEAP 515
Query: 669 CGGSIFGSPAIDEVHDVLYVASTSG 693
G + +P+ V YV+ G
Sbjct: 516 TGTGVVAAPSTYMVDGRQYVSVAVG 540
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Length = 573 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Score = 48.0 bits (113), Expect = 4e-06
Identities = 25/201 (12%), Positives = 57/201 (28%), Gaps = 11/201 (5%)
Query: 605 GCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCV 664
G + LD G + + + D +
Sbjct: 333 APKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPY-- 390
Query: 665 YKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCIT 724
G + + + ++Y+ + + + + K F+ + + +
Sbjct: 391 -----GAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT-AK 444
Query: 725 SANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYS 783
N G ++A D + W P G T+ + V + +G + +
Sbjct: 445 FFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTT--AGNVVFQGTADGRLVA 502
Query: 784 FEQESGNLLWEYSVGDPITAS 804
+ +G LWE G + A+
Sbjct: 503 YHAATGEKLWEAPTGTGVVAA 523
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Length = 573 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Score = 41.9 bits (97), Expect = 3e-04
Identities = 34/179 (18%), Positives = 60/179 (33%), Gaps = 13/179 (7%)
Query: 629 GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSP--AIDEVHDVL 686
+ L++ + + + +D + + P G G+ +
Sbjct: 392 AHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGP-GKPQSGTGWNTAKFFNAEP 450
Query: 687 YVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDS-S 745
+ GRL A A W E P +T+A V DG +VA + +
Sbjct: 451 PKSKPFGRLLAWDPVAQ--KAAWSVEHVSPWNGGT-LTTAGNVVFQGTADGRLVAYHAAT 507
Query: 746 GSIIWRCRTGGPIFAGPCTSFALPSQ-VLICSRNGSIYSF-----EQESGNLLWEYSVG 798
G +W TG + A P T Q V + G +Y E++ ++ + VG
Sbjct: 508 GEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG 566
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} Length = 596 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Score = 47.3 bits (111), Expect = 7e-06
Identities = 13/137 (9%), Positives = 40/137 (29%), Gaps = 12/137 (8%)
Query: 671 GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHV 730
G + D ++ ++ + + + +
Sbjct: 392 YHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPG-------PKG 444
Query: 731 ICCLVD--GHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQE 787
+ G + A + +G W ++ G + V + +G + + + +
Sbjct: 445 DRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMAT--AGDLVFYGTLDGYLKARDSD 502
Query: 788 SGNLLWEYSVGDPITAS 804
+G+LLW++ +
Sbjct: 503 TGDLLWKFKIPSGAIGY 519
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} Length = 596 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Score = 46.9 bits (110), Expect = 9e-06
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 1/85 (1%)
Query: 609 GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLP 668
G+I + +TGD W V + A L++ G+ D L A D ++K
Sbjct: 453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAG-DLVFYGTLDGYLKARDSDTGDLLWKFK 511
Query: 669 CGGSIFGSPAIDEVHDVLYVASTSG 693
G P YVA G
Sbjct: 512 IPSGAIGYPMTYTHKGTQYVAIYYG 536
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} Length = 596 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Score = 41.1 bits (95), Expect = 5e-04
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 692 SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIW 750
G++ A A+ W + + +A V +DG++ A D +G ++W
Sbjct: 452 LGQIKAY--NAITGDYKWEKMERFAVWGGT-MATAGDLVFYGTLDGYLKARDSDTGDLLW 508
Query: 751 RCRTGGPIFAGPCT 764
+ + P T
Sbjct: 509 KFKIPSGAIGYPMT 522
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} Length = 596 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Score = 39.9 bits (92), Expect = 0.001
Identities = 36/215 (16%), Positives = 66/215 (30%), Gaps = 31/215 (14%)
Query: 623 WTFQT--CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFR-------------NYRCVYKL 667
WTF T + P+V ++ S +N +AL N
Sbjct: 44 WTFSTGLLNGHEGAPLV-VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVA 102
Query: 668 PCGGSIFG---SPAIDEVHDVLYVASTSGRLTAISVKAL-PFHTLWLHELEVPAFASLCI 723
C G P + ++ G + A++ + + +++V + ++
Sbjct: 103 CCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAP 162
Query: 724 TSANRHVI------CCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICS 776
VI V G++ A D +G +WR GP S
Sbjct: 163 YVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQ 222
Query: 777 RNGSIYSFEQES----GNLLWEYSVGDPITASAYI 807
+ ++E ++ G W + DP T Y
Sbjct: 223 KGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYF 257
|
| >d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]} Length = 76 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Peptidyl carrier domain domain: Peptidyl carrier protein (PCP), thioester domain species: Bacillus brevis [TaxId: 1393]
Score = 38.7 bits (90), Expect = 2e-04
Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 358 ASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNS------IAAAHVAHNLGIDMRLIYNF 411
+ + + + + L V + DNFF +GG+S A H + + + +++++
Sbjct: 5 TNAVESKLAEIWERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFAQ 64
Query: 412 PTPSKL 417
PT L
Sbjct: 65 PTIKAL 70
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 900 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 100.0 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 100.0 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 100.0 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 100.0 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 100.0 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 99.96 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 99.96 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 99.95 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 99.95 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 99.94 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.92 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.91 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.9 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.89 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.89 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.88 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.88 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.88 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.87 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.87 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.86 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.86 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.86 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.85 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.84 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.8 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.78 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.77 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.77 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.76 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.75 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.73 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.73 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.68 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.68 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.68 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.67 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.67 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.67 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.62 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.62 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.58 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.57 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.57 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.51 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.5 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.49 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.47 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.46 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.41 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.39 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.36 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.35 | |
| d2gdwa1 | 76 | Peptidyl carrier protein (PCP), thioester domain { | 99.3 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.22 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.22 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.18 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.11 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.0 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.92 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.86 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.83 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.74 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.7 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.63 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.58 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.49 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.42 | |
| d1nq4a_ | 95 | Oxytetracycline polyketide synthase acyl carrier { | 98.41 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.37 | |
| d1vkua_ | 85 | Acyl carrier protein {Thermotoga maritima [TaxId: | 98.36 | |
| d2af8a_ | 86 | Actinorhodin polyketide synthase acyl carrier prot | 98.35 | |
| d1klpa_ | 115 | Acyl carrier protein {Mycobacterium tuberculosis [ | 98.32 | |
| d2jq4a1 | 83 | Hypothetical protein Atu2571 {Agrobacterium tumefa | 98.3 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.28 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.24 | |
| d1dv5a_ | 80 | apo-D-alanyl carrier protein {Lactobacillus casei | 98.2 | |
| d2pnga1 | 76 | Type I fatty acid synthase ACP domain {Rat (Rattus | 98.19 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.15 | |
| d1or5a_ | 82 | Frenolicin polyketide synthase acyl carrier protei | 98.13 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.89 | |
| d1f80d_ | 74 | Acyl carrier protein {Bacillus subtilis [TaxId: 14 | 97.87 | |
| d1t8ka_ | 77 | Acyl carrier protein {Escherichia coli [TaxId: 562 | 97.45 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.99 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 96.79 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 95.97 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 95.54 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 95.52 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 94.71 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 92.89 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 91.53 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 84.63 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 84.34 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=0 Score=408.15 Aligned_cols=325 Identities=19% Similarity=0.269 Sum_probs=281.0
Q ss_pred CCCCCCCCCEEEECCCCCHHHHHHH-HHHHHHHCCEEEECCCHHHHHCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHH
Q ss_conf 6589998848998067404748999-999989199599569145323699999999983801999047899999998750
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~l~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~ 81 (900)
..++++++|++++.+|++|++++.. ++.+|.+|+++++.+......+|..+++.++++++|++.++|+++++++.....
T Consensus 287 ~~~~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~ 366 (643)
T d1pg4a_ 287 YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK 366 (643)
T ss_dssp HHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG
T ss_pred HHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCH
T ss_conf 96198988789992776998888999999998588999956888879999999999997993998059999999857510
Q ss_pred CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 458899999579999636899646999986599--955995007421135510000368861000378885203202589
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFP--NISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISN 159 (900)
Q Consensus 82 ~~~~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~ 159 (900)
.....++++||.+++|||++++++++++.+.++ ++.+++.||+||++..++...... ......++|+|+++
T Consensus 367 ~~~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~~-------~~~~~gs~G~p~~g 439 (643)
T d1pg4a_ 367 AIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA-------IELKAGSATRPFFG 439 (643)
T ss_dssp GTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTT-------CCBCTTCCBSBCTT
T ss_pred HCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECHHHCCCEEEECCCCC-------CCCCCCCCCCCCCC
T ss_conf 02456887637999986789999999999985888863997263212066578248876-------67777766304479
Q ss_pred CEEEEECCCCC---CCCCCEEEECCC--CCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCE
Q ss_conf 48999659998---999668999265--3152125999878100102477665567678898635752962898069939
Q 002615 160 CDIVLVESDTV---KPDEGEIYAGGL--CLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDL 234 (900)
Q Consensus 160 ~~~~i~d~~~~---~~~~Gel~v~g~--~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l 234 (900)
++++++|+++. .++.|||+++|+ .++.||+++++.+.+.+.. ..++||+|||++++++||.+
T Consensus 440 ~~v~ivd~~g~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~-------------~~~g~~~TGDl~~~d~dG~l 506 (643)
T d1pg4a_ 440 VQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFS-------------TFKNMYFSGDGARRDEDGYY 506 (643)
T ss_dssp CCEEEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHS-------------SSTTSEEEEEEEEECTTSCE
T ss_pred CEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHCHHHHCC-------------CCCCEEECCCEEEECCCCEE
T ss_conf 78999989998988996579999568886555005782234321202-------------68985874878999899209
Q ss_pred EEECCCCCCEEECCEEECHHHHHHHHHCCCCEEEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 99810599278995640847899999479990089999761488348999999953888863888999999998209978
Q 002615 235 VFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLA 314 (900)
Q Consensus 235 ~~~GR~d~~ik~~G~ri~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~ 314 (900)
+++||+||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.++|||+++++....+.+..+|+++++++|+.+
T Consensus 507 ~i~GR~dd~ik~~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~~~i~~~~~~~L~~~ 586 (643)
T d1pg4a_ 507 WITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPL 586 (643)
T ss_dssp EEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGG
T ss_pred EEECCCCCEEEECCEEECHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99526641899899999889999999849982569999888799985999999978999999889999999998538866
Q ss_pred CCCCEEEECCCCCCCCCCCCCHHHHCCCCCCCC
Q ss_conf 427779981875799999731342113343322
Q 002615 315 MIPNRFVFMDSLPMTSSGKVDYASLSASTSFTI 347 (900)
Q Consensus 315 ~~p~~~~~v~~lP~t~~GKidr~~L~~~~~~~~ 347 (900)
++|+.++++++||+|++|||+|++|++++..+.
T Consensus 587 ~vP~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~~ 619 (643)
T d1pg4a_ 587 ATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDT 619 (643)
T ss_dssp GCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC-
T ss_pred CCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf 686489997988879986822899998753784
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=389.18 Aligned_cols=327 Identities=21% Similarity=0.282 Sum_probs=277.1
Q ss_pred CCCCCCCCCEEEECCCCCHHHHHH-HHHHHHHHCCEEEECCCHHHHHCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHH
Q ss_conf 658999884899806740474899-9999989199599569145323699999999983801999047899999998750
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQ-EFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~ 81 (900)
..++++++|++++.+|++|+.+.. .++.+|..|+++++.+......++..+++.++++++|.+.++|++++.+......
T Consensus 274 ~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~ 353 (640)
T d1ry2a_ 274 YTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDS 353 (640)
T ss_dssp HHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTT
T ss_pred HHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEECCHHHHHHHHHCCCC
T ss_conf 63289834300001560335468999999997198899955887779999999999970862897172899999856411
Q ss_pred CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 458899999579999636899646999986599--955995007421135510000368861000378885203202589
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFP--NISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISN 159 (900)
Q Consensus 82 ~~~~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~ 159 (900)
.....++++||.+++|||++++++++++.+.++ ...+++.||+||++..+....... .....+.++|+|+++
T Consensus 354 ~~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~------~~~~~~gs~G~p~~g 427 (640)
T d1ry2a_ 354 YIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGG------VTPMKPGSASFPFFG 427 (640)
T ss_dssp SSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTT------CCCCCTTCCCEECTT
T ss_pred CCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCC
T ss_conf 12337887358999943457689999999860887641785200222454222356777------677777644325578
Q ss_pred CEEEEECCCCC-----CCCCCEEEECC--CCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCEEEECCCC
Q ss_conf 48999659998-----99966899926--531521259998781001024776655676788986357529628980699
Q 002615 160 CDIVLVESDTV-----KPDEGEIYAGG--LCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSG 232 (900)
Q Consensus 160 ~~~~i~d~~~~-----~~~~Gel~v~g--~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~dg 232 (900)
++++++|+++. ...+|||++.+ +.++.||+++++.+.+.|.. ...+||+|||++++++||
T Consensus 428 ~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~-------------~~~gw~~TGDlg~~d~dG 494 (640)
T d1ry2a_ 428 IDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLN-------------PYPGYYFTGDGAAKDKDG 494 (640)
T ss_dssp CCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTS-------------SSTTSEEEEEEEEECTTC
T ss_pred CEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHCC-------------CCCCEEECCCCEEECCCC
T ss_conf 6589983799852578772489999705787546614697787864136-------------899767749820499998
Q ss_pred CEEEECCCCCCEEECCEEECHHHHHHHHHCCCCEEEEEEEEEECCCCEEEEEEEEEECCCCCCH-------HHHHHHHHH
Q ss_conf 3999810599278995640847899999479990089999761488348999999953888863-------888999999
Q 002615 233 DLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSS-------EIFLSSIKS 305 (900)
Q Consensus 233 ~l~~~GR~d~~ik~~G~ri~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~a~v~~~~~~~~~-------~~~~~~l~~ 305 (900)
+++|+||+||+||++|+||+|.+||++|.+||.|.+|+|++.+++..++.++|||++++..... ..+.++|++
T Consensus 495 ~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~ 574 (640)
T d1ry2a_ 495 YIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVF 574 (640)
T ss_dssp CEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHH
T ss_pred CEEEEECCCCEEEECCEEECHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 78998747788999999998899999998499832799998887989848999999737887663315789999999999
Q ss_pred HHHHHCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCCCCC
Q ss_conf 9982099784277799818757999997313421133433223
Q 002615 306 WVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTIS 348 (900)
Q Consensus 306 ~l~~~l~~~~~p~~~~~v~~lP~t~~GKidr~~L~~~~~~~~~ 348 (900)
+++++|+.+++|+.++++++||+|++|||+|++|++++..+..
T Consensus 575 ~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~~~ 617 (640)
T d1ry2a_ 575 TVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGESD 617 (640)
T ss_dssp HHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC----
T ss_pred HHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 9985488877860999969888899857229999999848765
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=360.94 Aligned_cols=318 Identities=22% Similarity=0.294 Sum_probs=267.2
Q ss_pred CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCEEEECCCHHHHHCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHC
Q ss_conf 65899988489980674047489999999891995995691453236999999999838019990478999999987504
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~ 82 (900)
..+.+..+|++++.+|++|..++...+.++..|+++++.++ ..++..+...++++++|.+.++|+++..++......
T Consensus 205 ~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~g~~~v~~~~---~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~ 281 (534)
T d1v25a_ 205 DGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGP---RLDPASLVELFDGEGVTFTAGVPTVWLALADYLEST 281 (534)
T ss_dssp TTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTT---CCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEECCEEEECCC---CCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 02354446634323642441431000000120312562143---333100000112124443346715666666542024
Q ss_pred CCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEECCCCCCCC--CCCCCCCCCEEEECCCCC
Q ss_conf 588999995799996368996469999865999559950074211355100003688610--003788852032025894
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSI--LEMSTLKSVPIGLPISNC 160 (900)
Q Consensus 83 ~~~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~--~~~~~~~~~~~G~p~~~~ 160 (900)
. .++++||.+++||+++++...+.+.+. +.++++.||+||++..++.......... .........++|+|++++
T Consensus 282 ~--~~~~~lr~~~~gG~~~~~~~~~~~~~~--~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~ 357 (534)
T d1v25a_ 282 G--HRLKTLRRLVVGGSAAPRSLIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV 357 (534)
T ss_dssp T--CCCSSCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTC
T ss_pred C--CCCCCEEEEEEECCCCCHHHHHHHHHH--CCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCC
T ss_conf 4--554431499994687887899999984--982365036543356122034676555667311356666400013783
Q ss_pred EEEEECCCCCC-----CCCCEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCEE
Q ss_conf 89996599989-----9966899926531521259998781001024776655676788986357529628980699399
Q 002615 161 DIVLVESDTVK-----PDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLV 235 (900)
Q Consensus 161 ~~~i~d~~~~~-----~~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~ 235 (900)
+++|+|+++.. ++.|||+++|+.++.||+++++.+...|. .++||+|||++++++||.++
T Consensus 358 ~~~i~d~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~---------------~dg~~~TGDlg~~~~~G~l~ 422 (534)
T d1v25a_ 358 RLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALT---------------PDGFFRTGDIAVWDEEGYVE 422 (534)
T ss_dssp EEEEECTTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBC---------------TTSCEEEEEEEEECTTCCEE
T ss_pred EEEEECCCCCCCCCCCCEEEEEEECCCCCCCEECCCHHHHHHHCC---------------CCCCCCCCCEEEECCCCCEE
T ss_conf 899999999997789980689997578646612488255123053---------------68987569664898991489
Q ss_pred EECCCCCCEEECCEEECHHHHHHHHHCCCCEEEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 98105992789956408478999994799900899997614883489999999538888638889999999982099784
Q 002615 236 FLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAM 315 (900)
Q Consensus 236 ~~GR~d~~ik~~G~ri~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 315 (900)
++||+|++||++|+||+|.+||++|.+||.|.+|+|++.+++..++.++|+|+++......+ +.++..+++.||.++
T Consensus 423 ~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~~~~~~~~---~~~~~~~~~~l~~~~ 499 (534)
T d1v25a_ 423 IKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPE---ELNEHLLKAGFAKWQ 499 (534)
T ss_dssp EEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC----------------------CCCTTT
T ss_pred EECCCCCEEEECCEEECHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCHH---HHHHHHHHHCCCCCC
T ss_conf 91365647998999998899999998199814699999987999969999999689999989---999999983699677
Q ss_pred CCCEEEECCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 277799818757999997313421133433
Q 002615 316 IPNRFVFMDSLPMTSSGKVDYASLSASTSF 345 (900)
Q Consensus 316 ~p~~~~~v~~lP~t~~GKidr~~L~~~~~~ 345 (900)
+|+.++++++||+|++|||||++|++.+..
T Consensus 500 ~P~~i~~~~~lP~t~~GKi~R~~lr~~~~~ 529 (534)
T d1v25a_ 500 LPDAYVFAEEIPRTSAGKFLKRALREQYKN 529 (534)
T ss_dssp SCSBC--------------CCTTHHHHSTT
T ss_pred CCCEEEEECCCCCCCCCCCCHHHHHHHHHH
T ss_conf 863899979878798856429999999976
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=0 Score=349.87 Aligned_cols=309 Identities=20% Similarity=0.234 Sum_probs=267.9
Q ss_pred CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCEEEECCCHHHHHCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 58999884899806740474899999998919959956914532369999999998380199904789999999875045
Q 002615 4 LYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQH 83 (900)
Q Consensus 4 ~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~ 83 (900)
.+.+.++|+++..+|++|..+....+..+..++..+... ..++......+..+++|.+.++|+++..+........
T Consensus 225 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~ 300 (541)
T d1lcia_ 225 GNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY----RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDK 300 (541)
T ss_dssp SCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS----SCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 333443332222122222222222222222222222222----2223116778765201223357642112223442100
Q ss_pred CCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCCCEEE
Q ss_conf 88999995799996368996469999865999559950074211355100003688610003788852032025894899
Q 002615 84 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 163 (900)
Q Consensus 84 ~~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 163 (900)
.++++||.+++||+++++.+.+.+.+.++...+++.||+||++..++..+.. .....++|+|+++++++
T Consensus 301 --~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~---------~~~~~svG~p~~~~~~~ 369 (541)
T d1lcia_ 301 --YDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG---------DDKPGAVGKVVPFFEAK 369 (541)
T ss_dssp --SCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECCCC------------CCCCBEECTTCEEE
T ss_pred --CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCC---------CCCCCCCCCCCCCCEEE
T ss_conf --1355221788645534454321111246775266357765247538866755---------68777631055897799
Q ss_pred EECCCC----CCCCCCEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCEEEECC
Q ss_conf 965999----8999668999265315212599987810010247766556767889863575296289806993999810
Q 002615 164 LVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 239 (900)
Q Consensus 164 i~d~~~----~~~~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~~~GR 239 (900)
|+|++. +.++.|||+++|+.++.||+++++.+...|. .++||+|||+++++++|.++++||
T Consensus 370 i~d~d~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~---------------~~~~~~TGDl~~~~~~G~~~~~GR 434 (541)
T d1lcia_ 370 VVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALID---------------KDGWLHSGDIAYWDEDEHFFIVDR 434 (541)
T ss_dssp EECTTTCCBCCTTCCEEEEEESTTSCSEETTBHHHHHHHBC---------------TTSCEEEEEEEEECTTCCEEEC--
T ss_pred EEECCCCCCCCCCCEEEEEECCCCCCCEECCCHHHHHHCCC---------------CCCCCCCCCEEEECCCEEEEEEEE
T ss_conf 99799995999998479999138637766789666221004---------------775434799517868817999321
Q ss_pred CCCCEEECCEEECHHHHHHHHHCCCCEEEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC-CCCC
Q ss_conf 599278995640847899999479990089999761488348999999953888863888999999998209978-4277
Q 002615 240 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLA-MIPN 318 (900)
Q Consensus 240 ~d~~ik~~G~ri~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~p~ 318 (900)
+||+||++|+||+|.+||++|.+||.|.+|+|++.+++..++.++++|+++++..... ++|+++++++++.+ ++|.
T Consensus 435 ~~d~i~~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~---~~l~~~~~~~l~~~~~~p~ 511 (541)
T d1lcia_ 435 LKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTE---KEIVDYVASQVTTAKKLRG 511 (541)
T ss_dssp ---CEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCH---HHHHHHHHHHSCGGGSCTT
T ss_pred ECCEEEECCEEECHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCH---HHHHHHHHHHCCCCCCCCC
T ss_conf 3488999999998999999998199802799999987999979999999789999999---9999999875776456971
Q ss_pred EEEECCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 799818757999997313421133433
Q 002615 319 RFVFMDSLPMTSSGKVDYASLSASTSF 345 (900)
Q Consensus 319 ~~~~v~~lP~t~~GKidr~~L~~~~~~ 345 (900)
.++++++||+|++|||||++|++++..
T Consensus 512 ~i~~v~~lP~t~~GKi~r~~l~~~~~~ 538 (541)
T d1lcia_ 512 GVVFVDEVPKGLTGKLDARKIREILIK 538 (541)
T ss_dssp EEEEESSCCC-----CCHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHH
T ss_conf 899949878698867549999999997
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=0 Score=321.57 Aligned_cols=307 Identities=28% Similarity=0.454 Sum_probs=265.1
Q ss_pred CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCEEEECCCHHHHHCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHC
Q ss_conf 65899988489980674047489999999891995995691453236999999999838019990478999999987504
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~ 82 (900)
..+++.++|++++..|++|..++..++.++..|+++++.+ .....+...+++.+..+.++.+..+|......
T Consensus 200 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 271 (514)
T d1amua_ 200 NSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIIL-KDTINDFVKFEQYINQKEITVITLPPTYVVHL------- 271 (514)
T ss_dssp HTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECC-HHHHTCHHHHHHHHHHTTCCEEEECHHHHTTS-------
T ss_pred CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHCCCCCCEEEECCCC-------
T ss_conf 2222223454421000232244321001022111001234-43333045555666653122111101101122-------
Q ss_pred CCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCCCEE
Q ss_conf 58899999579999636899646999986599955995007421135510000368861000378885203202589489
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 162 (900)
Q Consensus 83 ~~~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 162 (900)
....+++++.+++||+++++++.+++.+ +..+++.||+||++..++....... .....++.|.+.++..+
T Consensus 272 -~~~~~~~l~~~~~~G~~~~~~~~~~~~~---~~~~~~~yG~tE~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~v 341 (514)
T d1amua_ 272 -DPERILSIQTLITAGSATSPSLVNKWKE---KVTYINAYGPTETTICATTWVATKE------TIGHSVPIGAPIQNTQI 341 (514)
T ss_dssp -CTTTCCSCSEEEEESSCCCHHHHHHHTT---TSEEEEEECCGGGSSCSEEEECCSS------CCCSSCCCBEECTTEEE
T ss_pred -CCCCCCCCCEEEEECCCCCHHHHHHHCC---CEEEEEEECCCCCCEEEEECCCCCC------CCCCCCCCCCCEEEEEE
T ss_conf -2124554538998214589788543135---5169974125667335541135655------55766666640233357
Q ss_pred EEECCCC---CCCCCCEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCEEEECC
Q ss_conf 9965999---8999668999265315212599987810010247766556767889863575296289806993999810
Q 002615 163 VLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 239 (900)
Q Consensus 163 ~i~d~~~---~~~~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~~~GR 239 (900)
.+.|+++ +.++.|||+++|+.++.||++++..+.+.|...+.. .+++||+|||++++++||+++++||
T Consensus 342 ~~~d~~~~~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~---------~~~~~~~TGD~g~~d~~G~l~i~GR 412 (514)
T d1amua_ 342 YIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFV---------PGEKLYKTGDQARWLSDGNIEYLGR 412 (514)
T ss_dssp EEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSS---------TTSEEEEEEEEEEECTTSCEEEEEE
T ss_pred EEECCCCEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCC---------CCCCEEEECCEEEECCCCCEEEEEC
T ss_conf 6511463356999725999725854464203544550026751356---------8883689778789989984999942
Q ss_pred CCCCEEECCEEECHHHHHHHHHCCCCEEEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCE
Q ss_conf 59927899564084789999947999008999976148834899999995388886388899999999820997842777
Q 002615 240 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 319 (900)
Q Consensus 240 ~d~~ik~~G~ri~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~ 319 (900)
++|+||++|++|+|.+||+.|.+|+.|.+|+|++.++...+..++|++++++... .++|+++++++|+.+++|..
T Consensus 413 ~~d~i~~~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~~~~-----~~~l~~~~~~~l~~~~~p~~ 487 (514)
T d1amua_ 413 IDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIP-----LEQLRQFSSEELPTYMIPSY 487 (514)
T ss_dssp GGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCCC-----HHHHHHHHHHHSCGGGSCSE
T ss_pred CCCEEEECCEEECHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEEECCCCCC-----HHHHHHHHHHHCCCCCCCEE
T ss_conf 6687998999999999999997199826899998887889879999998289999-----99999999843875658609
Q ss_pred EEECCCCCCCCCCCCCHHHHCC
Q ss_conf 9981875799999731342113
Q 002615 320 FVFMDSLPMTSSGKVDYASLSA 341 (900)
Q Consensus 320 ~~~v~~lP~t~~GKidr~~L~~ 341 (900)
++++++||+|++|||+|++|++
T Consensus 488 i~~v~~lP~t~~GKi~R~~L~~ 509 (514)
T d1amua_ 488 FIQLDKMPLTSNGKIDRKQLPE 509 (514)
T ss_dssp EEECSSCCBCTTSSBCGGGSCC
T ss_pred EEEECCCCCCCCCCHHHHHCCC
T ss_conf 9996987879885740786079
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=315.17 Aligned_cols=310 Identities=22% Similarity=0.336 Sum_probs=254.9
Q ss_pred CCCCCCCCCEEEECCCCCHHHHHHH-H-HHHHHHCCEEEECCCHHHHHCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHH
Q ss_conf 6589998848998067404748999-9-9998919959956914532369999999998380199904789999999875
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQE-F-LSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQ 80 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~-~-~~~l~~G~~l~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~ 80 (900)
..+++.++|++++..|++|.+++.. + +..+..|.+++..+ ..++..+...+++++++.+..+|+.+..+.....
T Consensus 216 ~~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (536)
T d1mdba_ 216 EVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP----SPSPDDAFPLIEREKVTITALVPPLAMVWMDAAS 291 (536)
T ss_dssp HHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS----SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC----CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC
T ss_conf 222234433322222333222200011223123554223568----8998999999765202332222114666543013
Q ss_pred HCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCC-
Q ss_conf 0458899999579999636899646999986599955995007421135510000368861000378885203202589-
Q 002615 81 SQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISN- 159 (900)
Q Consensus 81 ~~~~~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~- 159 (900)
... ..+++++.+++||+++++.+.+++.+.+ +..+...||.+|.+..+...... ......++|.|+++
T Consensus 292 ~~~--~~~~~~~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~g~p~~~~ 360 (536)
T d1mdba_ 292 SRR--DDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMAEGLVNYTRLDDP--------EEIIVNTQGKPMSPY 360 (536)
T ss_dssp HCC--CCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECTTSCEEECCTTSC--------HHHHHHCCCEESSTT
T ss_pred CCC--CCCCCCEEEEEECCCCCCCCCCCHHHCC-CCEEEECCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCC
T ss_conf 332--2567550599841333444321012125-73221023433211233211211--------234567755677786
Q ss_pred CEEEEECCCC---CCCCCCEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCEEE
Q ss_conf 4899965999---8999668999265315212599987810010247766556767889863575296289806993999
Q 002615 160 CDIVLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVF 236 (900)
Q Consensus 160 ~~~~i~d~~~---~~~~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~~ 236 (900)
..+.+.++++ +.++.|||++.|+.++.||++++..+...+. .++||+|||++++++||.+++
T Consensus 361 ~~~~v~~~~g~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~---------------~~~~~~tGD~~~~~~dG~l~~ 425 (536)
T d1mdba_ 361 DESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFT---------------EDGFYRTGDIVRLTRDGYIVV 425 (536)
T ss_dssp CEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBC---------------TTSCEEEEEEEEECTTSCEEE
T ss_pred CEEEEECCCCCEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCC---------------CCCCCCCCCCCCCCCCCCEEC
T ss_conf 24799769897603422431413788643320023323311223---------------567533575211069986664
Q ss_pred ECCCCCCEEECCEEECHHHHHHHHHCCCCEEEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCC
Q ss_conf 81059927899564084789999947999008999976148834899999995388886388899999999820-99784
Q 002615 237 LGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK-LPLAM 315 (900)
Q Consensus 237 ~GR~d~~ik~~G~ri~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~-l~~~~ 315 (900)
+||+||+||++|+||+|.+||+.|.+||.|.+|+|++.+++..++.++|++++++..... ++|+++++++ +|.++
T Consensus 426 ~GR~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~~~~~----~~l~~~l~~~~l~~~~ 501 (536)
T d1mdba_ 426 EGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKA----AELKAFLRERGLAAYK 501 (536)
T ss_dssp EEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCCCH----HHHHHHHHHTTCCGGG
T ss_pred CCCCCEEEEECCEEECHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCH----HHHHHHHHHCCCCCCC
T ss_conf 787550899899999889999999839982579999988688985999999979999999----9999999736998675
Q ss_pred CCCEEEECCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 2777998187579999973134211334332
Q 002615 316 IPNRFVFMDSLPMTSSGKVDYASLSASTSFT 346 (900)
Q Consensus 316 ~p~~~~~v~~lP~t~~GKidr~~L~~~~~~~ 346 (900)
+|..++++++||+|++|||||++|++++..+
T Consensus 502 ~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 532 (536)
T d1mdba_ 502 IPDRVEFVESFPQTGVGKVSKKALREAISEK 532 (536)
T ss_dssp SCSEEEECSSCCBCTTSCBCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 8558999898786988675299999999988
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=0 Score=297.54 Aligned_cols=306 Identities=19% Similarity=0.246 Sum_probs=247.0
Q ss_pred CCCCCCCEEEECCCCCHHHHHHH-HHHHHHHCCEEEECCCHHHHHCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 89998848998067404748999-99998919959956914532369999999998380199904789999999875045
Q 002615 5 YPLHGEELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQH 83 (900)
Q Consensus 5 ~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~l~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~ 83 (900)
......|+.++.+|+.|..+... .+.+...++.+++.+ ..+|..+...+..++++.+..+|+.+..+........
T Consensus 191 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (503)
T d3cw9a1 191 LRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE----EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG 266 (503)
T ss_dssp CCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEECS----SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 222222222345764222222322222212234323466----5685775431111000001122222222124443334
Q ss_pred CCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCCCEEE
Q ss_conf 88999995799996368996469999865999559950074211355100003688610003788852032025894899
Q 002615 84 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 163 (900)
Q Consensus 84 ~~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 163 (900)
.....++||.+++|||+++++.+..+...+ +..+.+.||.||++..+........ .....+.+.+...+.
T Consensus 267 ~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~-~~~~~~~yg~~e~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 336 (503)
T d3cw9a1 267 SSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEAMNSLYMRQPKTG---------TEMAPGFFSEVRIVR 336 (503)
T ss_dssp TTCCCTTCCEEEECSSCCCHHHHHHHHHHC-CSEEEEEEEETTTEEEEEEESCSSS---------SEEBCCTTCCEEEEC
T ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCEEEEECCCCCC---------CCCCCCCCCCCEEEE
T ss_conf 344665147997436544453222222222-2112354454211201210122344---------444433554212565
Q ss_pred EECCCC---CCCCCCEEEECCC-CCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCEEEECC
Q ss_conf 965999---8999668999265-315212599987810010247766556767889863575296289806993999810
Q 002615 164 LVESDT---VKPDEGEIYAGGL-CLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 239 (900)
Q Consensus 164 i~d~~~---~~~~~Gel~v~g~-~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~~~GR 239 (900)
+.+..+ ..++.|++.+.+. ....+|++++..+.+.| .++||+|||++++++||.++++||
T Consensus 337 ~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~----------------~~g~~~TgD~g~~~~dG~l~~~GR 400 (503)
T d3cw9a1 337 IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL----------------QDGWYRTSDVAVWTPEGTVRILGR 400 (503)
T ss_dssp TTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE----------------ETTEEEEEEEEEECTTSCEEEEEE
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH----------------CCCCEECCCCCCCCCCCEEEECCC
T ss_conf 3024686368985220011112222222357734348773----------------188511135453024885885787
Q ss_pred CCCCEEECCEEECHHHHHHHHHCCCCEEEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHH-HHCCCCCCCC
Q ss_conf 599278995640847899999479990089999761488348999999953888863888999999998-2099784277
Q 002615 240 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVS-SKLPLAMIPN 318 (900)
Q Consensus 240 ~d~~ik~~G~ri~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~-~~l~~~~~p~ 318 (900)
+||+||++|+||+|.+||+.+.+||.|.+|+|++.+++..++.+++||+++.+..... ++++++++ ++||.+++|+
T Consensus 401 ~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~---~~l~~~~~~~~l~~~~~P~ 477 (503)
T d3cw9a1 401 VDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA---DALDTFCRSSELADFKRPK 477 (503)
T ss_dssp SSCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCH---HHHHHHHHHSSSCGGGSCS
T ss_pred CCCEEEECCEEECHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCH---HHHHHHHHHCCCCCCCCCC
T ss_conf 6786998999998899999998199815799997887889818999999678999999---9999999866899777833
Q ss_pred EEEECCCCCCCCCCCCCHHHHCCCC
Q ss_conf 7998187579999973134211334
Q 002615 319 RFVFMDSLPMTSSGKVDYASLSAST 343 (900)
Q Consensus 319 ~~~~v~~lP~t~~GKidr~~L~~~~ 343 (900)
.++++++||+|++|||||++|++..
T Consensus 478 ~i~~v~~~P~t~~GKi~R~~L~~~~ 502 (503)
T d3cw9a1 478 RYFILDQLPKNALNKVLRRQLVQQV 502 (503)
T ss_dssp EEEECSCCCBCTTSCBCHHHHHHHH
T ss_pred EEEEECCCCCCCCCCCCHHHHHHHC
T ss_conf 8999898886988682299999965
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=100.00 E-value=1.8e-31 Score=199.49 Aligned_cols=317 Identities=17% Similarity=0.257 Sum_probs=229.3
Q ss_pred CCCCCCCCCCCCC--CCCCCCEEEEECCCEEEEEECC-CCEEEEEEC-CCCCEEEEEECCCCEEE-----------CEEE
Q ss_conf 2322131001266--6335625995189629999548-980999978-99818889864992242-----------6167
Q 002615 531 GFIQELWKVHMES--CVDASPLVVLKDSDIYLFVGSH-SHKFICADA-KRSSVLWEIKLEGRIEC-----------SAAV 595 (900)
Q Consensus 531 ~~~~~~W~~~~~~--~v~~sp~v~~~~~~~~i~igs~-~g~i~~~d~-~tG~~~w~~~~~~~~~~-----------~~~~ 595 (900)
..|++.|+++++. .+.++|++ .++.+|+++. ++.++++|+ +||+++|++........ .+.+
T Consensus 38 ~~L~~aW~~~~g~~~~~~~tP~v----~~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~ 113 (571)
T d2ad6a1 38 KNVKAAWSFSTGVLNGHEGAPLV----IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY 113 (571)
T ss_dssp GGCEEEEEEECSCCSCCCSCCEE----ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE
T ss_pred HHCEEEEEEECCCCCCCCCCCEE----ECCEEEEECCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 10328999968999986429989----99999994287995999948999866888358888654420024768886265
Q ss_pred ECCCCEEEEEEECCEEEEEECCCCCEEEEEECCC-----CEEEEEEEECCCCEEEEECC------CCEEEEEECCCCEEE
Q ss_conf 3599899999648989999778984799982199-----13431267479988999447------990999987899699
Q 002615 596 LADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG-----EVKCQPVVDAPRQLIWCGSH------DHNLYALDFRNYRCV 664 (900)
Q Consensus 596 ~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~-----~~~~~~~~~~~~~~i~~gs~------dg~i~~~d~~~g~~~ 664 (900)
.++.||+++.+|.|+++|.+||+++|.+.... .+..+|++.. +.|+++.. .|.++++|.++|+.+
T Consensus 114 --~~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~--~~vivg~~~~~~~~~G~v~a~D~~TG~~~ 189 (571)
T d2ad6a1 114 --GAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAK--DTVLMGCSGAELGVRGAVNAFDLKTGELK 189 (571)
T ss_dssp --ETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET--TEEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred --ECCEEEEEECCCCEEEEEHHHHHHHCCCCCCCCCCCCCEEECCEEEC--CEEEEEECCCCCCCCCCEEEEECCCCCEE
T ss_conf --08869999179757821002112202344455443241453675758--85888502344234674799988898588
Q ss_pred EEECC--------------------------------------CCCCCCCCEEECCCCEEEEEEC---------------
Q ss_conf 84104--------------------------------------9854347536315989999917---------------
Q 002615 665 YKLPC--------------------------------------GGSIFGSPAIDEVHDVLYVAST--------------- 691 (900)
Q Consensus 665 w~~~~--------------------------------------~~~~~~~~~~~~~~~~l~v~t~--------------- 691 (900)
|++.. ++.+++.+.++...+.+|+++.
T Consensus 190 W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~ 269 (571)
T d2ad6a1 190 WRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNK 269 (571)
T ss_dssp EEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCEEEEECCCCCCCCCCCCCCCCC
T ss_conf 99704688644455554454433467555566456776314379752046330520083456403456752234566335
Q ss_pred -CCCEEEEECCCCCCEEEEEEECCCCCE---------EEEEEEECCC---EEEEEEECCCEEEEC-CCCCEEEEECCCCC
Q ss_conf -991999991798740346853078511---------1123430799---899995259199997-99977765127996
Q 002615 692 -SGRLTAISVKALPFHTLWLHELEVPAF---------ASLCITSANR---HVICCLVDGHVVALD-SSGSIIWRCRTGGP 757 (900)
Q Consensus 692 -~g~i~~~d~~~~~g~~~w~~~~~~~~~---------~s~~~~~~~~---~i~~g~~~g~i~~~d-~~G~~~w~~~~~~~ 757 (900)
...++++|.++ |+.+|.++...... ....+...++ .++.++.+|.++++| .+|+.+|..+....
T Consensus 270 ~s~svvAld~~T--G~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~ 347 (571)
T d2ad6a1 270 WTMTIWGRDLDT--GMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPA 347 (571)
T ss_dssp TTTEEEEEETTT--CCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred CCCCEEEEECCC--HHHEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCC
T ss_conf 565325441255--011001245676331465655641145511576654046326564499985689837655546775
Q ss_pred --------------E--------------ECCCC---------CCCC-CCCEEEEEEEC---------------------
Q ss_conf --------------1--------------00563---------2334-89949999428---------------------
Q 002615 758 --------------I--------------FAGPC---------TSFA-LPSQVLICSRN--------------------- 778 (900)
Q Consensus 758 --------------~--------------~~~~~---------~~~~-~~~~i~~gs~d--------------------- 778 (900)
+ ...+. ...+ ..+.+|+...+
T Consensus 348 ~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (571)
T d2ad6a1 348 VNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGA 427 (571)
T ss_dssp CCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 32234556444632237643334566725777402224346652077888628976553443343002456677532156
Q ss_pred ----------------CEEEEEECCCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf ----------------9299996889844338824993420432232200013445678809999848993999996058
Q 002615 779 ----------------GSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 842 (900)
Q Consensus 779 ----------------g~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vg~~~G~i~~~d~~~~ 842 (900)
|.|.++|+.||+.+|++....+..+.+.... ++++++++.||.++++|.++|
T Consensus 428 ~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~Ta------------gglVf~G~~dg~l~A~Da~tG 495 (571)
T d2ad6a1 428 TLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTK------------GGLVWYATLDGYLKALDNKDG 495 (571)
T ss_dssp EEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEET------------TTEEEEECTTSEEEEEETTTC
T ss_pred CEEECCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCEEEEC------------CCEEEEECCCCEEEEEECCCC
T ss_conf 30331466776667756178853677846427678999875605966------------997999778996999999998
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCCCCCCEE--ECCEEEEEE
Q ss_conf 5665555545320356530269842248636--687899943
Q 002615 843 VTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGC 882 (900)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~--~~~~l~vg~ 882 (900)
+++|++++++...++|+. .+++.||+.
T Consensus 496 -------------e~lW~~~l~~~~~a~P~ty~~dGkqYi~v 524 (571)
T d2ad6a1 496 -------------KELWNFKMPSGGIGSPMTYSFKGKQYIGS 524 (571)
T ss_dssp -------------CEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred -------------CEEEEEECCCCCEECCEEEEECCEEEEEE
T ss_conf -------------68789989999651564898899999999
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=100.00 E-value=2.5e-31 Score=198.67 Aligned_cols=332 Identities=20% Similarity=0.308 Sum_probs=235.2
Q ss_pred CCCCCCCCCCCCCC--CCCCCEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEEECCCC-----EE----ECEEEECCC
Q ss_conf 23221310012666--33562599518962999954898099997899818889864992-----24----261673599
Q 002615 531 GFIQELWKVHMESC--VDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR-----IE----CSAAVLADF 599 (900)
Q Consensus 531 ~~~~~~W~~~~~~~--v~~sp~v~~~~~~~~i~igs~~g~i~~~d~~tG~~~w~~~~~~~-----~~----~~~~~~~~~ 599 (900)
..|++.|+++++.. +.++|++ .++.||+++.++.|+|+|+.||+++|++..... .. ....+...+
T Consensus 42 ~~L~~aW~~~~~~~~~~~stPiv----~~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (560)
T d1kv9a2 42 RSLGLAWYMDLDNTRGLEATPLF----HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWG 117 (560)
T ss_dssp GGEEEEEEEECSCCSCCCCCCEE----ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEB
T ss_pred HCCEEEEEEECCCCCCCEECCEE----ECCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEC
T ss_conf 11438889978999985769999----99999997899959999689998798877987764454432246535750468
Q ss_pred CEEEEEEECCEEEEEECCCCCEEEEEECCC-----CEEEEEEEECCCCEEEEECC------CCEEEEEECCCCEEEEEEC
Q ss_conf 899999648989999778984799982199-----13431267479988999447------9909999878996998410
Q 002615 600 SQVVVGCYKGKIYFLDYLTGDIYWTFQTCG-----EVKCQPVVDAPRQLIWCGSH------DHNLYALDFRNYRCVYKLP 668 (900)
Q Consensus 600 ~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~-----~~~~~~~~~~~~~~i~~gs~------dg~i~~~d~~~g~~~w~~~ 668 (900)
+.||+++.++.|+++|..+|+.+|.+...+ .....+.+.. +.++++.. .|.|+++|.++|+.+|++.
T Consensus 118 ~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~--~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 195 (560)
T d1kv9a2 118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVK--GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (560)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEET--TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEECCCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEEEEC--CCCCCCCCCEECCCCCEEEEEECCCCEEEEEEE
T ss_conf 849997389879999777895773057667554045432004506--851036531100135538999778862776641
Q ss_pred C-------------------------------CCCCCCCCEEECCCCEEEEEEC-------------------CCCEEEE
Q ss_conf 4-------------------------------9854347536315989999917-------------------9919999
Q 002615 669 C-------------------------------GGSIFGSPAIDEVHDVLYVAST-------------------SGRLTAI 698 (900)
Q Consensus 669 ~-------------------------------~~~~~~~~~~~~~~~~l~v~t~-------------------~g~i~~~ 698 (900)
. ++.+++.+.++...+.+|+++. ...+.++
T Consensus 196 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAl 275 (560)
T d1kv9a2 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (560)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 00345567764311223456666653100267887556552143468036447887435556424667765453036873
Q ss_pred ECCCCCCEEEEEEECCCCCE--------EEE-EEEECC---CEEEEEEECCCEEEEC-CCCCEEEEECCCCCE-------
Q ss_conf 91798740346853078511--------112-343079---9899995259199997-999777651279961-------
Q 002615 699 SVKALPFHTLWLHELEVPAF--------ASL-CITSAN---RHVICCLVDGHVVALD-SSGSIIWRCRTGGPI------- 758 (900)
Q Consensus 699 d~~~~~g~~~w~~~~~~~~~--------~s~-~~~~~~---~~i~~g~~~g~i~~~d-~~G~~~w~~~~~~~~------- 758 (900)
|.++ |+..|.++...... ... .+...+ ..++.++.+|.++++| .+|+++|..+.....
T Consensus 276 d~~t--G~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~ 353 (560)
T d1kv9a2 276 RPDT--GKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDL 353 (560)
T ss_dssp CTTT--CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECT
T ss_pred CCCC--CCEEEEEECCCCCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 3776--42158871036533234565124420031179602566625765369998468882435344465443345572
Q ss_pred ------------------ECCCC----------CCCCCCCEEEEEEE---------------------------------
Q ss_conf ------------------00563----------23348994999942---------------------------------
Q 002615 759 ------------------FAGPC----------TSFALPSQVLICSR--------------------------------- 777 (900)
Q Consensus 759 ------------------~~~~~----------~~~~~~~~i~~gs~--------------------------------- 777 (900)
...+. ...-..+.+|+...
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 433 (560)
T d1kv9a2 354 ATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPA 433 (560)
T ss_dssp TTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCG
T ss_pred HHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 21321000123223355056535666545656316688871653510166200014666444444234667666667887
Q ss_pred ---CCEEEEEECCCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf ---89299996889844338824993420432232200013445678809999848993999996058566555554532
Q 002615 778 ---NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHM 854 (900)
Q Consensus 778 ---dg~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vg~~~G~i~~~d~~~~~~~~~~~~~~~~ 854 (900)
.|.+.++|+.+|+++|++..+.+....+.... ++++++|+.+|.++++|.++|
T Consensus 434 ~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~Ta------------gglVF~G~~dg~l~A~Da~tG------------ 489 (560)
T d1kv9a2 434 AVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTA------------GNLVFQGTAAGQMHAYSADKG------------ 489 (560)
T ss_dssp GGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEET------------TTEEEEECTTSEEEEEETTTC------------
T ss_pred CCCCCCEEEEECCCCEEEEECCCCCCCCCCEEEEC------------CCEEEEECCCCCEEEEECCCC------------
T ss_conf 66666468870778837310257888877405987------------998999778981999999998------------
Q ss_pred EEEEEEECCCCCCCCCCEE--ECCEEEEEE----------------------ECCEEEEEECCCC
Q ss_conf 0356530269842248636--687899943----------------------0893999981044
Q 002615 855 VQEFAKLELQGDIFSSPVM--IGGRVFVGC----------------------RDDYIYCIALETQ 895 (900)
Q Consensus 855 ~~~~~~~~l~~~~~ss~~~--~~~~l~vg~----------------------~dg~l~~ld~~tg 895 (900)
+++|+++++..+...|+. .+++.||.- ..+.|+.|.+...
T Consensus 490 -e~LW~~~l~~~~~~~P~ty~~dGkqyv~v~aG~g~~~~~~~~~~~~~~~~~~g~~l~~F~L~g~ 553 (560)
T d1kv9a2 490 -EALWQFEAQSGIVAAPMTFELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDGK 553 (560)
T ss_dssp -CEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETCC
T ss_pred -CEEEEEECCCCCCCCCEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
T ss_conf -5827998999955167799989999999991778654556664311145788988999982998
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=100.00 E-value=5.6e-30 Score=190.62 Aligned_cols=333 Identities=17% Similarity=0.240 Sum_probs=231.1
Q ss_pred CCCCCCCCCCCCC--CCCCCCEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEEECCCC-----------EEECEEEEC
Q ss_conf 2322131001266--633562599518962999954898099997899818889864992-----------242616735
Q 002615 531 GFIQELWKVHMES--CVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR-----------IECSAAVLA 597 (900)
Q Consensus 531 ~~~~~~W~~~~~~--~v~~sp~v~~~~~~~~i~igs~~g~i~~~d~~tG~~~w~~~~~~~-----------~~~~~~~~~ 597 (900)
..|++.|+++++. .+.++|++ .++.||+++.++.|+|+|+.||+++|++..... +...+.+.
T Consensus 53 ~~L~~aW~~~~~~~~~~~stPiv----~~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~- 127 (573)
T d1kb0a2 53 KDLGLAWSYNLESTRGVEATPVV----VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW- 127 (573)
T ss_dssp GGEEEEEEEECCCCSCCCCCCEE----ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE-
T ss_pred HCCEEEEEEECCCCCCCEECCEE----ECCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE-
T ss_conf 20569999989999985779999----9999999789996999958999858786798876533334566566652387-
Q ss_pred CCCEEEEEEECCEEEEEECCCCCEEEEEECCC------CEEEEEEEECCCCEEEEECC------CCEEEEEECCCCEEEE
Q ss_conf 99899999648989999778984799982199------13431267479988999447------9909999878996998
Q 002615 598 DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG------EVKCQPVVDAPRQLIWCGSH------DHNLYALDFRNYRCVY 665 (900)
Q Consensus 598 ~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~------~~~~~~~~~~~~~~i~~gs~------dg~i~~~d~~~g~~~w 665 (900)
++.+++++.++.++++|..+|+.+|+..... .....|++.. +.+++++. .|.|+++|.++|+.+|
T Consensus 128 -~~~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~--~~vivg~~~~~~~~~G~v~a~D~~TG~~~W 204 (573)
T d1kb0a2 128 -KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFK--GKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (573)
T ss_dssp -TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEET--TEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred -CCCEEEEECCCCEEEECCCCCCCEECCCCCCCCCCEEEEECCEEEEE--CCEEEEECCCCCCCCCEEEEEECCCCCCEE
T ss_conf -88189973365406661624300101467568765078601027970--627992134455432218998568865102
Q ss_pred EECCC--------------------------------CCCCCCCEEECCCCEEEEEECC-------------------CC
Q ss_conf 41049--------------------------------8543475363159899999179-------------------91
Q 002615 666 KLPCG--------------------------------GSIFGSPAIDEVHDVLYVASTS-------------------GR 694 (900)
Q Consensus 666 ~~~~~--------------------------------~~~~~~~~~~~~~~~l~v~t~~-------------------g~ 694 (900)
++... +.++..+.++...+.+|+++.+ ..
T Consensus 205 ~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~s 284 (573)
T d1kb0a2 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS 284 (573)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEECHHHCEEEECCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 55310456777777543223432358877546637987623561185433815511477754441000345666666420
Q ss_pred EEEEECCCCCCEEEEEEECCCCCE-----E----EEEEEECC---CEEEEEEECCCEEEEC-CCCCEEEEECCCCC----
Q ss_conf 999991798740346853078511-----1----12343079---9899995259199997-99977765127996----
Q 002615 695 LTAISVKALPFHTLWLHELEVPAF-----A----SLCITSAN---RHVICCLVDGHVVALD-SSGSIIWRCRTGGP---- 757 (900)
Q Consensus 695 i~~~d~~~~~g~~~w~~~~~~~~~-----~----s~~~~~~~---~~i~~g~~~g~i~~~d-~~G~~~w~~~~~~~---- 757 (900)
+.++|.++ |+..|.++...... . ......++ ..++.++.+|.++++| .+|+.+|..+....
T Consensus 285 vvAld~~t--G~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~ 362 (573)
T d1kb0a2 285 IVALDPDT--GKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS 362 (573)
T ss_dssp EEEECTTT--CCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred EEEECCCC--HHEEECCCCCCCCCCCCCCCCEEEECCEECCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 79961550--0012024436751120012201442020017972362021255531688612434422311225664344
Q ss_pred --------------------EECCCC----------CCCCCCCEEEEEEE------------------------------
Q ss_conf --------------------100563----------23348994999942------------------------------
Q 002615 758 --------------------IFAGPC----------TSFALPSQVLICSR------------------------------ 777 (900)
Q Consensus 758 --------------------~~~~~~----------~~~~~~~~i~~gs~------------------------------ 777 (900)
....+. ...-..+.+|+...
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 442 (573)
T d1kb0a2 363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (573)
T ss_dssp EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred CCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 42112200000002346663378631567766655420887616985411154253115553235577875310355322
Q ss_pred -------------CCEEEEEECCCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCC
Q ss_conf -------------8929999688984433882499342043223220001344567880999984899399999605856
Q 002615 778 -------------NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVT 844 (900)
Q Consensus 778 -------------dg~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vg~~~G~i~~~d~~~~~~ 844 (900)
-|.+.++|+.+|+.+|+++...+....+... .++++++|+.||.+++||.++|
T Consensus 443 ~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~~gg~lst------------agglVF~G~~dg~l~A~Da~TG-- 508 (573)
T d1kb0a2 443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTT------------AGNVVFQGTADGRLVAYHAATG-- 508 (573)
T ss_dssp CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE------------TTTEEEEECTTSEEEEEETTTC--
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCEEEE------------CCCEEEEECCCCEEEEEECCCC--
T ss_conf 23345688777873617875787786670516889887760798------------6998999779991999999988--
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCEE--ECCEEEEEEE------------------CCEEEEEECCCCCCC
Q ss_conf 65555545320356530269842248636--6878999430------------------893999981044333
Q 002615 845 GKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCR------------------DDYIYCIALETQHLE 898 (900)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~l~~~~~ss~~~--~~~~l~vg~~------------------dg~l~~ld~~tg~~~ 898 (900)
+++|++.+++....+|+. .+++.||.-. .+.|+.|.+......
T Consensus 509 -----------e~LW~~~~~~~~~~~P~ty~~~GkQYv~v~~G~gg~~~~~~~~~~~~~~~~~~~F~l~g~~~~ 571 (573)
T d1kb0a2 509 -----------EKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGKARM 571 (573)
T ss_dssp -----------CEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETCBCCC
T ss_pred -----------CEEEEEECCCCCCCCCEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC
T ss_conf -----------685799898994516779998999999999378753233455555789988999980996779
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=100.00 E-value=7e-29 Score=184.14 Aligned_cols=319 Identities=15% Similarity=0.209 Sum_probs=225.8
Q ss_pred CCCCCCCCCCCCCC--CCCCCCEEEEECCCEEEEEEC-CCCEEEEEEC-CCCCEEEEEECCCCEE-----------ECEE
Q ss_conf 22322131001266--633562599518962999954-8980999978-9981888986499224-----------2616
Q 002615 530 RGFIQELWKVHMES--CVDASPLVVLKDSDIYLFVGS-HSHKFICADA-KRSSVLWEIKLEGRIE-----------CSAA 594 (900)
Q Consensus 530 ~~~~~~~W~~~~~~--~v~~sp~v~~~~~~~~i~igs-~~g~i~~~d~-~tG~~~w~~~~~~~~~-----------~~~~ 594 (900)
-..|++.|+++++. .+.++|++ .++.||+.+ ..+.++++|. +||+++|++....... ..+.
T Consensus 37 v~~L~~aW~~~~~~~~~~~~tPiv----~~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~ 112 (596)
T d1w6sa_ 37 VKQLRPAWTFSTGLLNGHEGAPLV----VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLA 112 (596)
T ss_dssp GGGEEEEEEEECSCCSCCCSCCEE----ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCE
T ss_pred HHHCEEEEEEECCCCCCCEECCEE----ECCEEEEEECCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEE
T ss_conf 622218999978999985419989----9999999517899689995799887788703878864343213566665169
Q ss_pred EECC----CCEEEEEEECCEEEEEECCCCCEEEEEECCC-----CEEEEEEEECCCCEEEEECC------CCEEEEEECC
Q ss_conf 7359----9899999648989999778984799982199-----13431267479988999447------9909999878
Q 002615 595 VLAD----FSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG-----EVKCQPVVDAPRQLIWCGSH------DHNLYALDFR 659 (900)
Q Consensus 595 ~~~~----~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~-----~~~~~~~~~~~~~~i~~gs~------dg~i~~~d~~ 659 (900)
+..+ ...|++++.|+.||++|.+||+.+|.+.... .+.++|.+.. +.|++|+. .|.|+++|.+
T Consensus 113 ~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~--~~vivg~~~~e~~~~G~v~A~Da~ 190 (596)
T d1w6sa_ 113 YWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVK--DKVIIGSSGAELGVRGYLTAYDVK 190 (596)
T ss_dssp EECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET--TEEEECCBCGGGTCCCEEEEEETT
T ss_pred EECCCCCCCEEEEEEECCCCEEEECCCCCCEECCCCCCCCCCCCCCCCCCCEEC--CEEEEEECCCCCCCCCCEEEEECC
T ss_conf 832799886299998079876854365684102310146555642245881777--758993023444335732898878
Q ss_pred CCEEEEEECC--------------------------------------CCCCCCCCEEECCCCEEEEEECC---------
Q ss_conf 9969984104--------------------------------------98543475363159899999179---------
Q 002615 660 NYRCVYKLPC--------------------------------------GGSIFGSPAIDEVHDVLYVASTS--------- 692 (900)
Q Consensus 660 ~g~~~w~~~~--------------------------------------~~~~~~~~~~~~~~~~l~v~t~~--------- 692 (900)
+|+.+|++.. ++.++..+.++...+.+|+++.+
T Consensus 191 TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r 270 (596)
T d1w6sa_ 191 TGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMR 270 (596)
T ss_dssp TCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGS
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
T ss_conf 88577886535886554555445433333454554666678873334787422562215677725405645556520235
Q ss_pred -------CCEEEEECCCCCCEEEEEEECCCCCE------EEEEE----EECC---CEEEEEEECCCEEEEC-CCCCEEEE
Q ss_conf -------91999991798740346853078511------11234----3079---9899995259199997-99977765
Q 002615 693 -------GRLTAISVKALPFHTLWLHELEVPAF------ASLCI----TSAN---RHVICCLVDGHVVALD-SSGSIIWR 751 (900)
Q Consensus 693 -------g~i~~~d~~~~~g~~~w~~~~~~~~~------~s~~~----~~~~---~~i~~g~~~g~i~~~d-~~G~~~w~ 751 (900)
..+.++|+++ |+.+|.++...... ..+.+ ..++ ..++..+.+|.++++| .+|+.+|.
T Consensus 271 ~g~n~ys~sivAlD~~T--G~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~ 348 (596)
T d1w6sa_ 271 PGDNKWTMTIFGRDADT--GEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA 348 (596)
T ss_dssp CSCCTTSSEEEEEETTT--CCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCCCCCCCCCCCCCCCC--CCCCCCCCCEECCCCCCCCCCCEEEEECCCCCCCCCCCEECCCCCCCEEEECCCCCCEEEE
T ss_conf 65333444301026355--0010012403025657765421065310333355532100146543225406778825540
Q ss_pred ECCCCC--------------EEC--------------CCC----------CCCCCCCEEEEEEE----------------
Q ss_conf 127996--------------100--------------563----------23348994999942----------------
Q 002615 752 CRTGGP--------------IFA--------------GPC----------TSFALPSQVLICSR---------------- 777 (900)
Q Consensus 752 ~~~~~~--------------~~~--------------~~~----------~~~~~~~~i~~gs~---------------- 777 (900)
.+.... +.. .|. ...-..+.+|+...
T Consensus 349 ~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g 428 (596)
T d1w6sa_ 349 NKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAG 428 (596)
T ss_dssp EESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 14466565445421124532127410235776553574154443446765547777559723533432135434555456
Q ss_pred -----------------------CCEEEEEECCCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCE
Q ss_conf -----------------------892999968898443388249934204322322000134456788099998489939
Q 002615 778 -----------------------NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSI 834 (900)
Q Consensus 778 -----------------------dg~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vg~~~G~i 834 (900)
.|.|.++|+.+|+.+|+.....+....+.... ++++++|+.||.+
T Consensus 429 ~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTa------------gglVF~G~~Dg~l 496 (596)
T d1w6sa_ 429 QFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATA------------GDLVFYGTLDGYL 496 (596)
T ss_dssp SCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEET------------TTEEEEECTTSEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEECCCCCCCCCCCCEEEEC------------CCEEEEECCCCEE
T ss_conf 5311442320247566745578855389980788856233278888744146866------------9979997899959
Q ss_pred EEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEE--ECCEEEEE
Q ss_conf 999960585665555545320356530269842248636--68789994
Q 002615 835 HILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVG 881 (900)
Q Consensus 835 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~--~~~~l~vg 881 (900)
+++|.++| +++|++.++..+..+|+. .+++-||.
T Consensus 497 ~A~Da~TG-------------e~LW~~~~~~~~~a~P~tY~~dGkQYva 532 (596)
T d1w6sa_ 497 KARDSDTG-------------DLLWKFKIPSGAIGYPMTYTHKGTQYVA 532 (596)
T ss_dssp EEEETTTC-------------CEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEEECCCC-------------CEEEEEECCCCCCCCCEEEEECCEEEEE
T ss_conf 99999998-------------4836998999954077689989999999
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=7.2e-29 Score=184.06 Aligned_cols=319 Identities=17% Similarity=0.253 Sum_probs=221.5
Q ss_pred CCCCCCCCCCCCCCC----CCCCCEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEEECCCC---------EEECEEEE
Q ss_conf 223221310012666----33562599518962999954898099997899818889864992---------24261673
Q 002615 530 RGFIQELWKVHMESC----VDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR---------IECSAAVL 596 (900)
Q Consensus 530 ~~~~~~~W~~~~~~~----v~~sp~v~~~~~~~~i~igs~~g~i~~~d~~tG~~~w~~~~~~~---------~~~~~~~~ 596 (900)
-..|++.|+++++.. ..++|++ .++.||+++.++.|+++|+.||+++|++..... ....+.+
T Consensus 41 v~~L~~aW~~~~g~~~~~~~~stPiv----~~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~- 115 (582)
T d1flga_ 41 VFKLTPAWSYSFGDEKQRGQESQAIV----SDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI- 115 (582)
T ss_dssp GGGCEEEEEEECCTTCCSCCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE-
T ss_pred HHHCEEEEEEECCCCCCCCCCCCCEE----ECCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEE-
T ss_conf 62212888995899777876438989----8999999689995999968999868887688987655333444677458-
Q ss_pred CCCCEEEEEEECCEEEEEECCCCCEEEEEECCCC-----EEEEEEEECC---CCEEEEE-------CCCCEEEEEECCCC
Q ss_conf 5998999996489899997789847999821991-----3431267479---9889994-------47990999987899
Q 002615 597 ADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE-----VKCQPVVDAP---RQLIWCG-------SHDHNLYALDFRNY 661 (900)
Q Consensus 597 ~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~-----~~~~~~~~~~---~~~i~~g-------s~dg~i~~~d~~~g 661 (900)
.++.+++++.++.++++|.+||+++|.....+. ....+.+... .+.+++. ...+.++++|.++|
T Consensus 116 -~~~~i~~~t~~~~l~alda~tG~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG 194 (582)
T d1flga_ 116 -YGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTG 194 (582)
T ss_dssp -ETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTC
T ss_pred -ECCCEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEECCCEEECCCCEEEEEEEECCCCCCCCCCCCEEEECCCCC
T ss_conf -6781588648874998116666302111024777661240386670488475799990766543465463487238888
Q ss_pred EEEEEECC-----------------------------------------CCCCCCCCEEECCCCEEEEEEC---------
Q ss_conf 69984104-----------------------------------------9854347536315989999917---------
Q 002615 662 RCVYKLPC-----------------------------------------GGSIFGSPAIDEVHDVLYVAST--------- 691 (900)
Q Consensus 662 ~~~w~~~~-----------------------------------------~~~~~~~~~~~~~~~~l~v~t~--------- 691 (900)
+.+|++.. ++.+++++.++...+.+|+++.
T Consensus 195 ~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~ 274 (582)
T d1flga_ 195 EEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWA 274 (582)
T ss_dssp CEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGG
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEECCCCCEEEECCCCCCCCCCCC
T ss_conf 67898712178656224666533343234457775455557764020589862254200356645896457865333443
Q ss_pred ---------------CCCEEEEECCCCCCEEEEEEECCCCCE------EEEE---EE-ECC---CEEEEEEECCCEEEEC
Q ss_conf ---------------991999991798740346853078511------1123---43-079---9899995259199997
Q 002615 692 ---------------SGRLTAISVKALPFHTLWLHELEVPAF------ASLC---IT-SAN---RHVICCLVDGHVVALD 743 (900)
Q Consensus 692 ---------------~g~i~~~d~~~~~g~~~w~~~~~~~~~------~s~~---~~-~~~---~~i~~g~~~g~i~~~d 743 (900)
...+.++|.++ |+.+|.++...... ..+. +. ..+ ..++..+.++.++++|
T Consensus 275 ~~~~g~~~~~~dn~ys~SvvAld~~t--G~~~W~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vld 352 (582)
T d1flga_ 275 RTAKGGNPHDYDSLYTSGQVGVDPSS--GEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVD 352 (582)
T ss_dssp GSCTTSCSTTCCCTTCSEEEEECTTT--CCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCC--HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEC
T ss_conf 45678776764322212058733553--1332113322355312322344332343323445542357504644078624
Q ss_pred -CCCCEEEEECCCCC----------------------------------EECCCCC---------C-CCCCCEEEEEEE-
Q ss_conf -99977765127996----------------------------------1005632---------3-348994999942-
Q 002615 744 -SSGSIIWRCRTGGP----------------------------------IFAGPCT---------S-FALPSQVLICSR- 777 (900)
Q Consensus 744 -~~G~~~w~~~~~~~----------------------------------~~~~~~~---------~-~~~~~~i~~gs~- 777 (900)
.+|+++|..+.... ....|.. . ....+.+|+...
T Consensus 353 r~tG~~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~ 432 (582)
T d1flga_ 353 RSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANH 432 (582)
T ss_dssp TTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEECCCCCCEEEECCC
T ss_conf 66873022235667554323356665652011564445335664455428977875577411441455877705310234
Q ss_pred --------------------------------CCEEEEEECCCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf --------------------------------892999968898443388249934204322322000134456788099
Q 002615 778 --------------------------------NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLV 825 (900)
Q Consensus 778 --------------------------------dg~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 825 (900)
.|.++++|+.+|+++|++..+.+....+.... ++++
T Consensus 433 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~i~W~~~~~~p~~~g~lsta------------gglV 500 (582)
T d1flga_ 433 WKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATA------------GNLV 500 (582)
T ss_dssp EEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEET------------TTEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCCCEEEEC------------CCEE
T ss_conf 5532222335543366542667544536668877599980789958732677999745016976------------9869
Q ss_pred EEECCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEE--ECCEEEEE
Q ss_conf 998489939999960585665555545320356530269842248636--68789994
Q 002615 826 CICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVG 881 (900)
Q Consensus 826 ~vg~~~G~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~--~~~~l~vg 881 (900)
++|+.||.++++|.++| +++|+++++......|+. .+++-||.
T Consensus 501 F~Gt~dg~l~A~Da~TG-------------e~LW~~~~~~~~~~~P~ty~~~G~qYv~ 545 (582)
T d1flga_ 501 FTGTGDGYFKAFDAKSG-------------KELWKFQTGSGIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp EEECTTSEEEEEETTTC-------------CEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEECCCCEEEEEECCCC-------------CEEEEEECCCCCCCCCEEEEECCEEEEE
T ss_conf 99679996999999998-------------6867988999962167799989999999
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.96 E-value=1e-25 Score=165.27 Aligned_cols=266 Identities=14% Similarity=0.223 Sum_probs=186.5
Q ss_pred CCCCCCCCCCCCCCC-----------CCEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEEECCC-----CEEECEEEE
Q ss_conf 221310012666335-----------6259951896299995489809999789981888986499-----224261673
Q 002615 533 IQELWKVHMESCVDA-----------SPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEG-----RIECSAAVL 596 (900)
Q Consensus 533 ~~~~W~~~~~~~v~~-----------sp~v~~~~~~~~i~igs~~g~i~~~d~~tG~~~w~~~~~~-----~~~~~~~~~ 596 (900)
-+++|+++....... .+.+ .++.||+++.++.++++|.+||++.|++...+ .+..++.+.
T Consensus 84 G~~~W~~~~~~~~~~~~~~~~~~~~rg~a~----~~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~ 159 (571)
T d2ad6a1 84 GKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA 159 (571)
T ss_dssp TSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCEE----ECCEEEEEECCCCEEEEEHHHHHHHCCCCCCCCCCCCCEEECCEEE
T ss_conf 866888358888654420024768886265----0886999917975782100211220234445544324145367575
Q ss_pred CCCCEEEEEEE------CCEEEEEECCCCCEEEEEECCC--------------------------------------CEE
Q ss_conf 59989999964------8989999778984799982199--------------------------------------134
Q 002615 597 ADFSQVVVGCY------KGKIYFLDYLTGDIYWTFQTCG--------------------------------------EVK 632 (900)
Q Consensus 597 ~~~~~i~vg~~------dg~l~~~d~~tG~~~w~~~~~~--------------------------------------~~~ 632 (900)
. +.++++.. .|.|+++|+.||+++|++.... .+.
T Consensus 160 ~--~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW 237 (571)
T d2ad6a1 160 K--DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNW 237 (571)
T ss_dssp T--TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCC
T ss_pred C--CEEEEEECCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 8--85888502344234674799988898588997046886444555544544334675555664567763143797520
Q ss_pred EEEEEECCCCEEEEECC----------------CCEEEEEECCCCEEEEEECCC-CCCC-----CCCEE---ECCC---C
Q ss_conf 31267479988999447----------------990999987899699841049-8543-----47536---3159---8
Q 002615 633 CQPVVDAPRQLIWCGSH----------------DHNLYALDFRNYRCVYKLPCG-GSIF-----GSPAI---DEVH---D 684 (900)
Q Consensus 633 ~~~~~~~~~~~i~~gs~----------------dg~i~~~d~~~g~~~w~~~~~-~~~~-----~~~~~---~~~~---~ 684 (900)
..+.++...+.+|+++. ...++++|.++|+.+|.++.. ..++ ..+.+ ..++ .
T Consensus 238 ~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~ 317 (571)
T d2ad6a1 238 GWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTP 317 (571)
T ss_dssp SCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEE
T ss_pred CCCCCCHHCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCC
T ss_conf 46330520083456403456752234566335565325441255011001245676331465655641145511576654
Q ss_pred EEEEEECCCCEEEEECCCCCCEEEEEEECCCCC---------------------------------------EEEEEEEE
Q ss_conf 999991799199999179874034685307851---------------------------------------11123430
Q 002615 685 VLYVASTSGRLTAISVKALPFHTLWLHELEVPA---------------------------------------FASLCITS 725 (900)
Q Consensus 685 ~l~v~t~~g~i~~~d~~~~~g~~~w~~~~~~~~---------------------------------------~~s~~~~~ 725 (900)
.++.++.+|.++++|.++ |+.+|........ .......+
T Consensus 318 ~v~~~~k~G~l~vlDr~t--G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP 395 (571)
T d2ad6a1 318 LLSHIDRNGILYTLNREN--GNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDP 395 (571)
T ss_dssp EEEEECTTSEEEEEETTT--CCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred CEEECCCCCEEEEEECCC--CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEECC
T ss_conf 046326564499985689--837655546775322345564446322376433345667257774022243466520778
Q ss_pred CCCEEEEEEE-------------------------------------CCCEEEEC-CCCCEEEEECCCCCEECCCCCCCC
Q ss_conf 7998999952-------------------------------------59199997-999777651279961005632334
Q 002615 726 ANRHVICCLV-------------------------------------DGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFA 767 (900)
Q Consensus 726 ~~~~i~~g~~-------------------------------------~g~i~~~d-~~G~~~w~~~~~~~~~~~~~~~~~ 767 (900)
..+.+|+... .|.+.++| .+|+++|+.....+..+.+.. .
T Consensus 396 ~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~--T 473 (571)
T d2ad6a1 396 ESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLY--T 473 (571)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEE--E
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCEEE--E
T ss_conf 88628976553443343002456677532156303314667766677561788536778464276789998756059--6
Q ss_pred CCCEEEEEEECCEEEEEECCCCCEEEEEECCCCEECCCCCC
Q ss_conf 89949999428929999688984433882499342043223
Q 002615 768 LPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYID 808 (900)
Q Consensus 768 ~~~~i~~gs~dg~i~~~d~~tG~~~w~~~~~~~~~~~~~~~ 808 (900)
.++.+|+++.||.+++||.++|+.+|+++++..+.++|...
T Consensus 474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty 514 (571)
T d2ad6a1 474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTY 514 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEECCEEE
T ss_conf 69979997789969999999986878998999965156489
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=99.96 E-value=3.8e-25 Score=161.91 Aligned_cols=247 Identities=17% Similarity=0.263 Sum_probs=175.7
Q ss_pred CCEEEEEECCCCEEEEEECCCCCEEEEEECCCC-----EEECEEEECCCCEEEEEEE------CCEEEEEECCCCCEEEE
Q ss_conf 962999954898099997899818889864992-----2426167359989999964------89899997789847999
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR-----IECSAAVLADFSQVVVGCY------KGKIYFLDYLTGDIYWT 624 (900)
Q Consensus 556 ~~~~i~igs~~g~i~~~d~~tG~~~w~~~~~~~-----~~~~~~~~~~~~~i~vg~~------dg~l~~~d~~tG~~~w~ 624 (900)
.++.+|+++.++.|+++|..||+.+|++...+. +..++.+.. +.++++.. .|.|+++|..||+++|+
T Consensus 116 ~~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~--~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~ 193 (560)
T d1kv9a2 116 WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVK--GKVIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (560)
T ss_dssp EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEET--TEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEECCCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEEEEC--CCCCCCCCCEECCCCCEEEEEECCCCEEEEE
T ss_conf 68849997389879999777895773057667554045432004506--8510365311001355389997788627766
Q ss_pred EECC-------------------------------CCEEEEEEEECCCCEEEEECC-------------------CCEEE
Q ss_conf 8219-------------------------------913431267479988999447-------------------99099
Q 002615 625 FQTC-------------------------------GEVKCQPVVDAPRQLIWCGSH-------------------DHNLY 654 (900)
Q Consensus 625 ~~~~-------------------------------~~~~~~~~~~~~~~~i~~gs~-------------------dg~i~ 654 (900)
+.+. ..+...+.+++..+.+|+++. ...+.
T Consensus 194 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~siv 273 (560)
T d1kv9a2 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (560)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 41003455677643112234566666531002678875565521434680364478874355564246677654530368
Q ss_pred EEECCCCEEEEEECCCC-CCC-----CCCEE---ECCC---CEEEEEECCCCEEEEECCCCCCEEEEEEECCCCC-----
Q ss_conf 99878996998410498-543-----47536---3159---8999991799199999179874034685307851-----
Q 002615 655 ALDFRNYRCVYKLPCGG-SIF-----GSPAI---DEVH---DVLYVASTSGRLTAISVKALPFHTLWLHELEVPA----- 717 (900)
Q Consensus 655 ~~d~~~g~~~w~~~~~~-~~~-----~~~~~---~~~~---~~l~v~t~~g~i~~~d~~~~~g~~~w~~~~~~~~----- 717 (900)
++|.++|+.+|.++... ..+ ..+.+ ...+ ..++.++.+|.++++|.++ |+.+|........
T Consensus 274 Ald~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~t--G~~i~~~~~~~~~~~~~~ 351 (560)
T d1kv9a2 274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTN--GKLISAEKFGKVTWAEKV 351 (560)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT--CCEEEEEESSCCCSEEEE
T ss_pred EECCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCEEEEEECCC--CCCCCCCCCCCCCCCCCC
T ss_conf 733776421588710365332345651244200311796025666257653699984688--824353444654433455
Q ss_pred -------------------------------EEEEEEEECCCEEEEEEE-------------------------------
Q ss_conf -------------------------------111234307998999952-------------------------------
Q 002615 718 -------------------------------FASLCITSANRHVICCLV------------------------------- 735 (900)
Q Consensus 718 -------------------------------~~s~~~~~~~~~i~~g~~------------------------------- 735 (900)
....+..+..+.+++...
T Consensus 352 d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (560)
T d1kv9a2 352 DLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDV 431 (560)
T ss_dssp CTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCC
T ss_pred CHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 72213210001232233550565356665456563166888716535101662000146664444442346676666678
Q ss_pred -----CCCEEEEC-CCCCEEEEECCCCCEECCCCCCCCCCCEEEEEEECCEEEEEECCCCCEEEEEECCCCEECCCCCC
Q ss_conf -----59199997-99977765127996100563233489949999428929999688984433882499342043223
Q 002615 736 -----DGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYID 808 (900)
Q Consensus 736 -----~g~i~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~tG~~~w~~~~~~~~~~~~~~~ 808 (900)
.|.+.++| .+|+++|+++.+.+..+.+. ...++.+|+++.||.+++||.++|+++|+++++..+...|...
T Consensus 432 p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l--~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty 508 (560)
T d1kv9a2 432 PAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTL--STAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTF 508 (560)
T ss_dssp CGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEE--EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred CCCCCCCCEEEEECCCCEEEEECCCCCCCCCCEE--EECCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCEEE
T ss_conf 8766666468870778837310257888877405--9879989997789819999999985827998999955167799
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=99.95 E-value=2.1e-24 Score=157.56 Aligned_cols=264 Identities=16% Similarity=0.245 Sum_probs=179.8
Q ss_pred CCCCCCCCCCC-----------CCCCCEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEEECCCC------EEECEEEE
Q ss_conf 21310012666-----------33562599518962999954898099997899818889864992------24261673
Q 002615 534 QELWKVHMESC-----------VDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR------IECSAAVL 596 (900)
Q Consensus 534 ~~~W~~~~~~~-----------v~~sp~v~~~~~~~~i~igs~~g~i~~~d~~tG~~~w~~~~~~~------~~~~~~~~ 596 (900)
+++|+++.... +...+.+ .++.+++++.++.++++|+.||+.+|+...... ....+.+.
T Consensus 98 ~~~W~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~ 173 (573)
T d1kb0a2 98 NRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF 173 (573)
T ss_dssp EEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCEE----ECCCEEEEECCCCEEEECCCCCCCEECCCCCCCCCCEEEEECCEEEE
T ss_conf 85878679887653333456656665238----78818997336540666162430010146756876507860102797
Q ss_pred CCCCEEEEEEE------CCEEEEEECCCCCEEEEEECCC--------------------------------CEEEEEEEE
Q ss_conf 59989999964------8989999778984799982199--------------------------------134312674
Q 002615 597 ADFSQVVVGCY------KGKIYFLDYLTGDIYWTFQTCG--------------------------------EVKCQPVVD 638 (900)
Q Consensus 597 ~~~~~i~vg~~------dg~l~~~d~~tG~~~w~~~~~~--------------------------------~~~~~~~~~ 638 (900)
. +.+++|.. .|.|++||..||+++|++.+.. .+...+.++
T Consensus 174 ~--~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D 251 (573)
T d1kb0a2 174 K--GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFD 251 (573)
T ss_dssp T--TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEE
T ss_pred E--CCEEEEECCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEC
T ss_conf 0--62799213445543221899856886510255310456777777543223432358877546637987623561185
Q ss_pred CCCCEEEEECC-------------------CCEEEEEECCCCEEEEEECCCC-CCC-----CCCEE---ECC---CCEEE
Q ss_conf 79988999447-------------------9909999878996998410498-543-----47536---315---98999
Q 002615 639 APRQLIWCGSH-------------------DHNLYALDFRNYRCVYKLPCGG-SIF-----GSPAI---DEV---HDVLY 687 (900)
Q Consensus 639 ~~~~~i~~gs~-------------------dg~i~~~d~~~g~~~w~~~~~~-~~~-----~~~~~---~~~---~~~l~ 687 (900)
...+.+|.++. ...+.++|.++|+.+|.++... ..+ ..+.+ ..+ ...++
T Consensus 252 ~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~ 331 (573)
T d1kb0a2 252 AELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVIL 331 (573)
T ss_dssp TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEE
T ss_pred HHHCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHEEECCCCCCCCCCCCCCCCEEEECCEECCCCCEEEEE
T ss_conf 43381551147775444100034566666642079961550001202443675112001220144202001797236202
Q ss_pred EEECCCCEEEEECCCCCCEEEEEEECCCCC-----------------------------------EEEEEEEECCCEEEE
Q ss_conf 991799199999179874034685307851-----------------------------------111234307998999
Q 002615 688 VASTSGRLTAISVKALPFHTLWLHELEVPA-----------------------------------FASLCITSANRHVIC 732 (900)
Q Consensus 688 v~t~~g~i~~~d~~~~~g~~~w~~~~~~~~-----------------------------------~~s~~~~~~~~~i~~ 732 (900)
.++.+|.++++|.++ |+.+|........ .......+..+.+|+
T Consensus 332 ~~~k~G~l~~lDr~t--Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv 409 (573)
T d1kb0a2 332 HAPKNGFFFVLDRTN--GKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYL 409 (573)
T ss_dssp ECCTTSEEEEEETTT--CCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEE
T ss_pred ECCCCCEEEEECCCC--CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEE
T ss_conf 125553168861243--442231122566434442112200000002346663378631567766655420887616985
Q ss_pred EEEC-------------------------------------------CCEEEEC-CCCCEEEEECCCCCEECCCCCCCCC
Q ss_conf 9525-------------------------------------------9199997-9997776512799610056323348
Q 002615 733 CLVD-------------------------------------------GHVVALD-SSGSIIWRCRTGGPIFAGPCTSFAL 768 (900)
Q Consensus 733 g~~~-------------------------------------------g~i~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~ 768 (900)
...+ |.+.++| .+|+++|+++...+..+.+. ...
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~~gg~l--sta 487 (573)
T d1kb0a2 410 PAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTL--TTA 487 (573)
T ss_dssp EEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEE--EET
T ss_pred ECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCEE--EEC
T ss_conf 411154253115553235577875310355322233456887778736178757877866705168898877607--986
Q ss_pred CCEEEEEEECCEEEEEECCCCCEEEEEECCCCEECCCCC
Q ss_conf 994999942892999968898443388249934204322
Q 002615 769 PSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYI 807 (900)
Q Consensus 769 ~~~i~~gs~dg~i~~~d~~tG~~~w~~~~~~~~~~~~~~ 807 (900)
++.||+|+.||.++|||.+||+.+|+++++..+...|..
T Consensus 488 gglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~t 526 (573)
T d1kb0a2 488 GNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPST 526 (573)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred CCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEE
T ss_conf 998999779991999999988685799898994516779
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=99.95 E-value=2.1e-23 Score=151.56 Aligned_cols=247 Identities=13% Similarity=0.211 Sum_probs=176.0
Q ss_pred CEEEEEECCCCEEEEEECCCCCEEEEEECCC-----CEEECEEEECCCCEEEEEEE------CCEEEEEECCCCCEEEEE
Q ss_conf 6299995489809999789981888986499-----22426167359989999964------898999977898479998
Q 002615 557 DIYLFVGSHSHKFICADAKRSSVLWEIKLEG-----RIECSAAVLADFSQVVVGCY------KGKIYFLDYLTGDIYWTF 625 (900)
Q Consensus 557 ~~~i~igs~~g~i~~~d~~tG~~~w~~~~~~-----~~~~~~~~~~~~~~i~vg~~------dg~l~~~d~~tG~~~w~~ 625 (900)
..+||+++.++.|+++|+.||+..|++...+ .+..++.+.. +.|++|.. .|.|++||+.||+++|++
T Consensus 121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~--~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~ 198 (596)
T d1w6sa_ 121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVK--DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRA 198 (596)
T ss_dssp CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET--TEEEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CEEEEEEECCCCEEEECCCCCCEECCCCCCCCCCCCCCCCCCCEEC--CEEEEEECCCCCCCCCCEEEEECCCCCEEEEE
T ss_conf 6299998079876854365684102310146555642245881777--75899302344433573289887888577886
Q ss_pred ECC--------------------------------------CCEEEEEEEECCCCEEEEECCC----------------C
Q ss_conf 219--------------------------------------9134312674799889994479----------------9
Q 002615 626 QTC--------------------------------------GEVKCQPVVDAPRQLIWCGSHD----------------H 651 (900)
Q Consensus 626 ~~~--------------------------------------~~~~~~~~~~~~~~~i~~gs~d----------------g 651 (900)
.+. ..+...+.++...+.+|+++.+ .
T Consensus 199 ~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~ 278 (596)
T d1w6sa_ 199 YATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTM 278 (596)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSS
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 53588655455544543333345455466667887333478742256221567772540564555652023565333444
Q ss_pred EEEEEECCCCEEEEEECCC-C-----CCCCCCEEEC----CC---CEEEEEECCCCEEEEECCCCCCEEEEEEECCCCC-
Q ss_conf 0999987899699841049-8-----5434753631----59---8999991799199999179874034685307851-
Q 002615 652 NLYALDFRNYRCVYKLPCG-G-----SIFGSPAIDE----VH---DVLYVASTSGRLTAISVKALPFHTLWLHELEVPA- 717 (900)
Q Consensus 652 ~i~~~d~~~g~~~w~~~~~-~-----~~~~~~~~~~----~~---~~l~v~t~~g~i~~~d~~~~~g~~~w~~~~~~~~- 717 (900)
.+.++|.++|+.+|.++.. . .....+.+.+ ++ ..++.++.+|.++++|..+ |+.+|..+.....
T Consensus 279 sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~t--G~~i~~~~~~~~~~ 356 (596)
T d1w6sa_ 279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTD--GALVSANKLDDTVN 356 (596)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTT--CCEEEEEESSTTCC
T ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCCCCCCCCCEECCCCCCCEEEECCCC--CCEEEECCCCCCCC
T ss_conf 3010263550010012403025657765421065310333355532100146543225406778--82554014466565
Q ss_pred --------------------------------------EEEEEEEECCCEEEEEEE------------------------
Q ss_conf --------------------------------------111234307998999952------------------------
Q 002615 718 --------------------------------------FASLCITSANRHVICCLV------------------------ 735 (900)
Q Consensus 718 --------------------------------------~~s~~~~~~~~~i~~g~~------------------------ 735 (900)
.......+..+.+|+...
T Consensus 357 ~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~ 436 (596)
T d1w6sa_ 357 VFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATL 436 (596)
T ss_dssp SEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 44542112453212741023577655357415444344676554777755972353343213543455545653114423
Q ss_pred ---------------CCCEEEEC-CCCCEEEEECCCCCEECCCCCCCCCCCEEEEEEECCEEEEEECCCCCEEEEEECCC
Q ss_conf ---------------59199997-99977765127996100563233489949999428929999688984433882499
Q 002615 736 ---------------DGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGD 799 (900)
Q Consensus 736 ---------------~g~i~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~tG~~~w~~~~~~ 799 (900)
.|.+.++| .+|+++|+.....+..+.+.. ..++.+|+|+.||.+++||.+||+++|+++++.
T Consensus 437 ~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~~~~gg~ls--TagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~ 514 (596)
T d1w6sa_ 437 NMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMA--TAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS 514 (596)
T ss_dssp EEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEE--ETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCEECCCCCCCCCCCCEEE--ECCCEEEEECCCCEEEEEECCCCCEEEEEECCC
T ss_conf 202475667455788553899807888562332788887441468--669979997899959999999984836998999
Q ss_pred CEECCCCCCC
Q ss_conf 3420432232
Q 002615 800 PITASAYIDE 809 (900)
Q Consensus 800 ~~~~~~~~~~ 809 (900)
.+.+.|....
T Consensus 515 ~~~a~P~tY~ 524 (596)
T d1w6sa_ 515 GAIGYPMTYT 524 (596)
T ss_dssp CCCSCCEEEE
T ss_pred CCCCCCEEEE
T ss_conf 9540776899
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.94 E-value=3e-23 Score=150.68 Aligned_cols=268 Identities=15% Similarity=0.204 Sum_probs=179.4
Q ss_pred CCCCCCCCCCCCCC---------CCCEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEEECCCC-----EEECEEEECC
Q ss_conf 22131001266633---------562599518962999954898099997899818889864992-----2426167359
Q 002615 533 IQELWKVHMESCVD---------ASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR-----IECSAAVLAD 598 (900)
Q Consensus 533 ~~~~W~~~~~~~v~---------~sp~v~~~~~~~~i~igs~~g~i~~~d~~tG~~~w~~~~~~~-----~~~~~~~~~~ 598 (900)
-+++|+++.....+ ..+.+ .++.+++++.++.++++|++||+++|+....+. ....+.+..+
T Consensus 88 G~~lW~~~~~~~~~~~~~~~~~~rg~a~----~~~~i~~~t~~~~l~alda~tG~~~W~~~~~~~~~~~~~~~~p~~~~~ 163 (582)
T d1flga_ 88 GKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKD 163 (582)
T ss_dssp CCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEEC
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCEE----ECCCEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEECCCEEECC
T ss_conf 9868887688987655333444677458----678158864887499811666630211102477766124038667048
Q ss_pred ---CCEEEEE-------EECCEEEEEECCCCCEEEEEECCC---------------------------------------
Q ss_conf ---9899999-------648989999778984799982199---------------------------------------
Q 002615 599 ---FSQVVVG-------CYKGKIYFLDYLTGDIYWTFQTCG--------------------------------------- 629 (900)
Q Consensus 599 ---~~~i~vg-------~~dg~l~~~d~~tG~~~w~~~~~~--------------------------------------- 629 (900)
.+.+++. ...+.++++|..||+.+|++....
T Consensus 164 ~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 243 (582)
T d1flga_ 164 GKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHG 243 (582)
T ss_dssp TTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGC
T ss_pred CCEEEEEEEECCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC
T ss_conf 84757999907665434654634872388886789871217865622466653334323445777545555776402058
Q ss_pred --CEEEEEEEECCCCEEEEECC------------------------CCEEEEEECCCCEEEEEECCCC-C-----CCCCC
Q ss_conf --13431267479988999447------------------------9909999878996998410498-5-----43475
Q 002615 630 --EVKCQPVVDAPRQLIWCGSH------------------------DHNLYALDFRNYRCVYKLPCGG-S-----IFGSP 677 (900)
Q Consensus 630 --~~~~~~~~~~~~~~i~~gs~------------------------dg~i~~~d~~~g~~~w~~~~~~-~-----~~~~~ 677 (900)
.+...+.++...+.+|+++. ...+.++|.++|+.+|.++... . ....|
T Consensus 244 gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W~~q~~~~D~wd~d~~~~p 323 (582)
T d1flga_ 244 GGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNEL 323 (582)
T ss_dssp BCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCC
T ss_pred CCCCCCCCEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 98622542003566458964578653334434567877676432221205873355313321133223553123223443
Q ss_pred EEEC----CC---CEEEEEECCCCEEEEECCCCCCEEEEEEECCCCC---------------------------------
Q ss_conf 3631----59---8999991799199999179874034685307851---------------------------------
Q 002615 678 AIDE----VH---DVLYVASTSGRLTAISVKALPFHTLWLHELEVPA--------------------------------- 717 (900)
Q Consensus 678 ~~~~----~~---~~l~v~t~~g~i~~~d~~~~~g~~~w~~~~~~~~--------------------------------- 717 (900)
.+.+ .. ..++..+.+|.++++|.++ |+.+|........
T Consensus 324 ~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~t--G~~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (582)
T d1flga_ 324 VLFDYKAKDGKIVKATAHADRNGFFYVVDRSN--GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKA 401 (582)
T ss_dssp EEEEEECSSSCEEEEEEEECTTSEEEEEETTT--CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCC
T ss_pred CCCCCCCCCCCCCCEEEEECCCCCEEEECCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCE
T ss_conf 32343323445542357504644078624668--7302223566755432335666565201156444533566445542
Q ss_pred ------------EEEEEEEECCCEEEEEEE---------------------------------CCCEEEEC-CCCCEEEE
Q ss_conf ------------111234307998999952---------------------------------59199997-99977765
Q 002615 718 ------------FASLCITSANRHVICCLV---------------------------------DGHVVALD-SSGSIIWR 751 (900)
Q Consensus 718 ------------~~s~~~~~~~~~i~~g~~---------------------------------~g~i~~~d-~~G~~~w~ 751 (900)
.......+..+.+|+... .|.+.++| .+|+++|+
T Consensus 402 ~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~i~W~ 481 (582)
T d1flga_ 402 VEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWE 481 (582)
T ss_dssp EEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEE
T ss_pred EEECCCCCCCCCCCCCEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEE
T ss_conf 89778755774114414558777053102345532222335543366542667544536668877599980789958732
Q ss_pred ECCCCCEECCCCCCCCCCCEEEEEEECCEEEEEECCCCCEEEEEECCCCEECCCCCC
Q ss_conf 127996100563233489949999428929999688984433882499342043223
Q 002615 752 CRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYID 808 (900)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~tG~~~w~~~~~~~~~~~~~~~ 808 (900)
.+.+.+..+.+. ...++.||+|+.||.+++||.+||+++|+++++......|...
T Consensus 482 ~~~~~p~~~g~l--stagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty 536 (582)
T d1flga_ 482 HKEHLPLWAGVL--ATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITW 536 (582)
T ss_dssp EEESSCCCSCCE--EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred CCCCCCCCCCEE--EECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEE
T ss_conf 677999745016--9769869996799969999999986867988999962167799
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=7.6e-20 Score=130.48 Aligned_cols=269 Identities=9% Similarity=0.074 Sum_probs=188.1
Q ss_pred EECCCEEEEEECCCCEEEEEECCCCCEE---EEEE--CCCCEEECEEEECCCCEEEEEEECCEEEEEECCCC--CEEEEE
Q ss_conf 5189629999548980999978998188---8986--49922426167359989999964898999977898--479998
Q 002615 553 LKDSDIYLFVGSHSHKFICADAKRSSVL---WEIK--LEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTG--DIYWTF 625 (900)
Q Consensus 553 ~~~~~~~i~igs~~g~i~~~d~~tG~~~---w~~~--~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG--~~~w~~ 625 (900)
+..++.+|+.|+ +|.|..||..++... .... .+.....+..+++++..+++++.||.|..||.... +.....
T Consensus 59 fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 137 (337)
T d1gxra_ 59 ISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL 137 (337)
T ss_dssp ECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEE
T ss_pred ECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 989999999997-9988997736776331168764048899689999867998898861233211111111111111111
Q ss_pred ECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCEEECCCCEEEEEECCCCEEEEECCCCCC
Q ss_conf 21991343126747998899944799099998789969984104985434753631598999991799199999179874
Q 002615 626 QTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPF 705 (900)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~i~~~d~~~~~g 705 (900)
..+........+.+++..+++++.++.+..++..++++............+..+...+..+++++.++.+..+|.++ +
T Consensus 138 ~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~--~ 215 (337)
T d1gxra_ 138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE--G 215 (337)
T ss_dssp ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--T
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--C
T ss_conf 11111111111111111111111111111111111111111111111111012344432112235665532111111--0
Q ss_pred EEEEEEECCCCCEEEEEEEECCCEEEEEEECCCEEEEC-CCCCEEEEECCCCCEECCCCCCCCCCCEEEEEEECCEEEEE
Q ss_conf 03468530785111123430799899995259199997-99977765127996100563233489949999428929999
Q 002615 706 HTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSF 784 (900)
Q Consensus 706 ~~~w~~~~~~~~~~s~~~~~~~~~i~~g~~~g~i~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~i~~gs~dg~i~~~ 784 (900)
+.+.......++ .+..+.+.+..+++++.++.+..+| .+++..........+.+.. . ...+..++.++.||.|+.|
T Consensus 216 ~~~~~~~~~~~i-~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~-~-s~~g~~l~s~s~Dg~i~iw 292 (337)
T d1gxra_ 216 RQLQQHDFTSQI-FSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLK-F-AYCGKWFVSTGKDNLLNAW 292 (337)
T ss_dssp EEEEEEECSSCE-EEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEE-E-CTTSSEEEEEETTSEEEEE
T ss_pred EEECCCCCCCCE-EEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEE-E-CCCCCEEEEEECCCEEEEE
T ss_conf 000024666615-799971530300000025642111111111000012456541699-9-8999999999489969999
Q ss_pred ECCCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEE
Q ss_conf 6889844338824993420432232200013445678809999848993999996
Q 002615 785 EQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 839 (900)
Q Consensus 785 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vg~~~G~i~~~d~ 839 (900)
|..+++.+........+....+.. ++..+++++.||.|++||.
T Consensus 293 d~~~~~~~~~~~~~~~v~~~~~s~------------d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 293 RTPYGASIFQSKESSSVLSCDISV------------DDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ETTTCCEEEEEECSSCEEEEEECT------------TSCEEEEEETTSCEEEEEE
T ss_pred ECCCCCEEEECCCCCCEEEEEEEC------------CCCEEEEEECCCEEEEEEE
T ss_conf 899997999926999879999927------------9999999908996999977
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=1.3e-19 Score=129.09 Aligned_cols=304 Identities=13% Similarity=0.118 Sum_probs=200.5
Q ss_pred CCEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEECEEEECCCCEEEEEEECCEEEEEECCCCCEEEEEECCCCEE--E
Q ss_conf 96299995489809999789981888986499224261673599899999648989999778984799982199134--3
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK--C 633 (900)
Q Consensus 556 ~~~~i~igs~~g~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~--~ 633 (900)
++++++.|+.|+.|+.||..+++.+..+..+.....+..++++ +.++.++.|+.++.|+..+++............ .
T Consensus 22 ~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~ 100 (355)
T d1nexb2 22 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 100 (355)
T ss_dssp ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 8999999918990999989999399999789998899998699-999999645244321111111111110011111111
Q ss_pred EEEEECCCCEEEEECCCCEEEEEECCCCEEEEEECCCC---------------------CCCCCCEEECCCCEEEEEECC
Q ss_conf 12674799889994479909999878996998410498---------------------543475363159899999179
Q 002615 634 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG---------------------SIFGSPAIDEVHDVLYVASTS 692 (900)
Q Consensus 634 ~~~~~~~~~~i~~gs~dg~i~~~d~~~g~~~w~~~~~~---------------------~~~~~~~~~~~~~~l~v~t~~ 692 (900)
......+...++.++.|+.+..||..++.......... ...........+..++.+..+
T Consensus 101 ~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d 180 (355)
T d1nexb2 101 DIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYD 180 (355)
T ss_dssp EEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETT
T ss_pred CCCCCCCCCEEEEECCCCCEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCC
T ss_conf 11111232204554388868999856773001246520001000001123401210110022210000256334421144
Q ss_pred CCEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCEEEEEEECCCEEEEC-CCCCEEEEECCCCCEECCCCCCCCCCCE
Q ss_conf 919999917987403468530785111123430799899995259199997-9997776512799610056323348994
Q 002615 693 GRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQ 771 (900)
Q Consensus 693 g~i~~~d~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~g~~~g~i~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~ 771 (900)
+.+..++..+ ++.+..................+..++.++.++.+.+++ .++..+..+......... + ...++.
T Consensus 181 ~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~--~-~~~~~~ 255 (355)
T d1nexb2 181 NTLIVWDVAQ--MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGL--L-RLSDKF 255 (355)
T ss_dssp SCEEEEETTT--TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCE--E-EECSSE
T ss_pred CEEEEEECCC--CCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCC--C-CCCCCE
T ss_conf 2044430131--1000110001233211111121002101245636876301221111111111111111--1-232100
Q ss_pred EEEEEECCEEEEEECCCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 99994289299996889844338824993420432232200013445678809999848993999996058566555554
Q 002615 772 VLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSK 851 (900)
Q Consensus 772 i~~gs~dg~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vg~~~G~i~~~d~~~~~~~~~~~~~ 851 (900)
++.++.||.|+.||..++.......... +....+... .+..+ +++.||.|++||.+++.
T Consensus 256 l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~-----------~~~~l-~~g~d~~i~vwd~~tg~-------- 314 (355)
T d1nexb2 256 LVSAAADGSIRGWDANDYSRKFSYHHTN-LSAITTFYV-----------SDNIL-VSGSENQFNIYNLRSGK-------- 314 (355)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECTT-CCCCCEEEE-----------CSSEE-EEEETTEEEEEETTTCC--------
T ss_pred EEEEECCCCCCCCCCCCCCEECCCCCCC-CEEEEEECC-----------CCCEE-EEEECCEEEEEECCCCC--------
T ss_conf 3332011111111111111000124688-229999849-----------99899-99809979999999997--------
Q ss_pred CCCEEEEE-EECCCCCCCCCCEEECCEEE-EEEECCEEEEEE
Q ss_conf 53203565-30269842248636687899-943089399998
Q 002615 852 DHMVQEFA-KLELQGDIFSSPVMIGGRVF-VGCRDDYIYCIA 891 (900)
Q Consensus 852 ~~~~~~~~-~~~l~~~~~ss~~~~~~~l~-vg~~dg~l~~ld 891 (900)
.+. ....+...+.+....++.++ .++.||.++.+.
T Consensus 315 -----~~~~~~~~~~~~V~~v~~~~~~~~~~~s~dg~~~l~~ 351 (355)
T d1nexb2 315 -----LVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEI 351 (355)
T ss_dssp -----BCCSCTTTTCSEEEEEEEETTEEEEEEESSSCEEEEE
T ss_pred -----EEEEEECCCCCCEEEEEECCCEEEEEEECCCCEEEEE
T ss_conf -----9888845899989999983991999998989099999
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=3.6e-19 Score=126.44 Aligned_cols=273 Identities=10% Similarity=0.044 Sum_probs=184.2
Q ss_pred EECEEEECCCCEEEEEEECCEEEEEECCCCCEE---EEE--ECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCC--E
Q ss_conf 426167359989999964898999977898479---998--219913431267479988999447990999987899--6
Q 002615 590 ECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIY---WTF--QTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY--R 662 (900)
Q Consensus 590 ~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~---w~~--~~~~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~~g--~ 662 (900)
..+..+++++.+++.|+ ||.|..||..++... ... ..+.....+..+.+++..+++++.|+.+..||.... +
T Consensus 54 V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~ 132 (337)
T d1gxra_ 54 VCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR 132 (337)
T ss_dssp CCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E
T ss_pred EEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf 89999989999999997-99889977367763311687640488996899998679988988612332111111111111
Q ss_pred EEEEECCCCCCCCCCEEECCCCEEEEEECCCCEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCEEEEEEECCCEEEE
Q ss_conf 99841049854347536315989999917991999991798740346853078511112343079989999525919999
Q 002615 663 CVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVAL 742 (900)
Q Consensus 663 ~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~i~~~d~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~g~~~g~i~~~ 742 (900)
................+.+++..++.++.++.+..++..+ ++.......+.....+..+..++..+++++.++.+..+
T Consensus 133 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~--~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~ 210 (337)
T d1gxra_ 133 IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN--QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210 (337)
T ss_dssp EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1111111111111111111111111111111111111111--11111111111111101234443211223566553211
Q ss_pred C-CCCCEEEEECCCCCEECCCCCCCCCCCEEEEEEECCEEEEEECCCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCC
Q ss_conf 7-999777651279961005632334899499994289299996889844338824993420432232200013445678
Q 002615 743 D-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSI 821 (900)
Q Consensus 743 d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (900)
| .+++.+.......++.+... ...+..+++++.+|.++.|+..+++..........+....+. +.
T Consensus 211 d~~~~~~~~~~~~~~~i~~l~~--~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s------------~~ 276 (337)
T d1gxra_ 211 DLREGRQLQQHDFTSQIFSLGY--CPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFA------------YC 276 (337)
T ss_dssp ETTTTEEEEEEECSSCEEEEEE--CTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEEC------------TT
T ss_pred CCCCCEEECCCCCCCCEEEEEE--CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC------------CC
T ss_conf 1111000002466661579997--153030000002564211111111100001245654169998------------99
Q ss_pred CEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEE--ECCEEEEEEECCEEEEEECC
Q ss_conf 8099998489939999960585665555545320356530269842248636--68789994308939999810
Q 002615 822 DRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCIALE 893 (900)
Q Consensus 822 ~~~i~vg~~~G~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~--~~~~l~vg~~dg~l~~ld~~ 893 (900)
+..++.++.||.|++||..++ +........+.+. +..+ .+..|+.|+.||.+++||+.
T Consensus 277 g~~l~s~s~Dg~i~iwd~~~~-------------~~~~~~~~~~~v~-~~~~s~d~~~l~t~s~D~~I~vWdl~ 336 (337)
T d1gxra_ 277 GKWFVSTGKDNLLNAWRTPYG-------------ASIFQSKESSSVL-SCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp SSEEEEEETTSEEEEEETTTC-------------CEEEEEECSSCEE-EEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred CCEEEEEECCCEEEEEECCCC-------------CEEEECCCCCCEE-EEEEECCCCEEEEEECCCEEEEEEEE
T ss_conf 999999948996999989999-------------7999926999879-99992799999999089969999778
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=9.7e-19 Score=123.90 Aligned_cols=277 Identities=13% Similarity=0.057 Sum_probs=166.1
Q ss_pred ECCCEEEEEECCCCEEEEEECCCCCEEEEEECCC------------------CEEECEEEECCCCEEEEEEECCEEEEEE
Q ss_conf 1896299995489809999789981888986499------------------2242616735998999996489899997
Q 002615 554 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEG------------------RIECSAAVLADFSQVVVGCYKGKIYFLD 615 (900)
Q Consensus 554 ~~~~~~i~igs~~g~i~~~d~~tG~~~w~~~~~~------------------~~~~~~~~~~~~~~i~vg~~dg~l~~~d 615 (900)
..++.++..|+ ++.|..||..+|+.+..+.... ....+.++++++..+++|+.||.++.||
T Consensus 71 s~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~ 149 (388)
T d1erja_ 71 SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD 149 (388)
T ss_dssp CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCCCCEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEECCCCCCCCCCC
T ss_conf 99999999994-99489998136405766316654432443211101467789889999889998012134441111211
Q ss_pred CCCCCEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCEEECCCCEEEEEECCCCE
Q ss_conf 78984799982199134312674799889994479909999878996998410498543475363159899999179919
Q 002615 616 YLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRL 695 (900)
Q Consensus 616 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~i 695 (900)
..+++.......+........+..+...++.++.++.+..||..+.....................++..+++++.+|.+
T Consensus 150 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 229 (388)
T d1erja_ 150 IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 229 (388)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEE
T ss_conf 11111111111111111110111111111122210156541011111100001245442112368878758997389819
Q ss_pred EEEECCCCCCEEEEEEECCC-------CCEEEEEEEECCCEEEEEEECCCEEEEC-CCCCEEEEECC-------------
Q ss_conf 99991798740346853078-------5111123430799899995259199997-99977765127-------------
Q 002615 696 TAISVKALPFHTLWLHELEV-------PAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT------------- 754 (900)
Q Consensus 696 ~~~d~~~~~g~~~w~~~~~~-------~~~~s~~~~~~~~~i~~g~~~g~i~~~d-~~G~~~w~~~~------------- 754 (900)
..++..+ +.......... ....+..+.+++..+++++.++.+..|| .++........
T Consensus 230 ~i~~~~~--~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (388)
T d1erja_ 230 RVWDSET--GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 307 (388)
T ss_dssp EEEETTT--CCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECC
T ss_pred EEEECCC--CCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCC
T ss_conf 9963455--73000102443334577898789999799999999978992898751577643210134442001101245
Q ss_pred CCCEECCCCCCCCCCCEEEEEEECCEEEEEECCCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCE
Q ss_conf 99610056323348994999942892999968898443388249934204322322000134456788099998489939
Q 002615 755 GGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSI 834 (900)
Q Consensus 755 ~~~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vg~~~G~i 834 (900)
...+.+.. ....+..|++++.||.|+.||..+|+.+.++..+........... .....+.+..++.|+.||.|
T Consensus 308 ~~~v~~~~--~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~-----~~~~spd~~~l~s~s~Dg~I 380 (388)
T d1erja_ 308 KDFVLSVA--TTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN-----GSSLGPEYNVFATGSGDCKA 380 (388)
T ss_dssp SSCEEEEE--ECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-----SCTTCTTCEEEEEEETTSEE
T ss_pred CCEEEEEE--ECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEEC-----CCCCCCCCCEEEEEECCCEE
T ss_conf 53278999--889999999996989799999999969999968899789999846-----74258999999999189979
Q ss_pred EEEEEE
Q ss_conf 999960
Q 002615 835 HILRVN 840 (900)
Q Consensus 835 ~~~d~~ 840 (900)
++|+.+
T Consensus 381 ~iW~~~ 386 (388)
T d1erja_ 381 RIWKYK 386 (388)
T ss_dssp EEEEEE
T ss_pred EEEEEE
T ss_conf 997621
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=1.5e-18 Score=122.72 Aligned_cols=289 Identities=10% Similarity=0.017 Sum_probs=184.8
Q ss_pred CCCEEECEEEECCCCEEEEEEECCEEEEEECCCCCEEEEEECCC------------------CEEEEEEEECCCCEEEEE
Q ss_conf 99224261673599899999648989999778984799982199------------------134312674799889994
Q 002615 586 EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG------------------EVKCQPVVDAPRQLIWCG 647 (900)
Q Consensus 586 ~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~------------------~~~~~~~~~~~~~~i~~g 647 (900)
+.....+..+++++.++++|+ |+.|..||..+|+....+.... .......+.+++..+++|
T Consensus 61 H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~ 139 (388)
T d1erja_ 61 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 139 (388)
T ss_dssp CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEC
T ss_conf 999689999999999999994-9948999813640576631665443244321110146778988999988999801213
Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCCCEEECCCCEEEEEECCCCEEEEECCCCCCEEEEEEECCCCCEEEEEEEECC
Q ss_conf 47990999987899699841049854347536315989999917991999991798740346853078511112343079
Q 002615 648 SHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSAN 727 (900)
Q Consensus 648 s~dg~i~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~i~~~d~~~~~g~~~w~~~~~~~~~~s~~~~~~~ 727 (900)
+.||.+..||..+++.+.....+............+..++.++.++.+..++..+ .....................++
T Consensus 140 ~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~ 217 (388)
T d1erja_ 140 AEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT--GQCSLTLSIEDGVTTVAVSPGDG 217 (388)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--TEEEEEEECSSCEEEEEECSTTC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC--CCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 4441111211111111111111111111101111111111222101565410111--11100001245442112368878
Q ss_pred CEEEEEEECCCEEEEC-CCCCEEEEECCCC--------CEECCCCCCCCCCCEEEEEEECCEEEEEECCCCCEEEEEECC
Q ss_conf 9899995259199997-9997776512799--------610056323348994999942892999968898443388249
Q 002615 728 RHVICCLVDGHVVALD-SSGSIIWRCRTGG--------PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVG 798 (900)
Q Consensus 728 ~~i~~g~~~g~i~~~d-~~G~~~w~~~~~~--------~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~tG~~~w~~~~~ 798 (900)
..+++++.++.+..++ .++.......... .+.+.. ....+..+++++.||.+..||..++.........
T Consensus 218 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 295 (388)
T d1erja_ 218 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV--FTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295 (388)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEE--ECTTSSEEEEEETTSEEEEEEC------------
T ss_pred CEEEEECCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCEEEEE--ECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCC
T ss_conf 75899738981999634557300010244333457789878999--9799999999978992898751577643210134
Q ss_pred CCE--ECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEE---
Q ss_conf 934--204322322000134456788099998489939999960585665555545320356530269842248636---
Q 002615 799 DPI--TASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--- 873 (900)
Q Consensus 799 ~~~--~~~~~~~~~~~~~~~~~~~~~~~i~vg~~~G~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~--- 873 (900)
... ........ ..+........+..+++|+.+|.|++||.+++ +....++.+...+.+...
T Consensus 296 ~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~-------------~~~~~l~~H~~~V~~~~~~~~ 361 (388)
T d1erja_ 296 NSGTCEVTYIGHK-DFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-------------NPLLMLQGHRNSVISVAVANG 361 (388)
T ss_dssp ---CEEEEEECCS-SCEEEEEECGGGCEEEEEETTSEEEEEETTTC-------------CEEEEEECCSSCEEEEEECSS
T ss_pred CCCCEEEECCCCC-CEEEEEEECCCCCEEEEEECCCEEEEEECCCC-------------CEEEEEECCCCCEEEEEEECC
T ss_conf 4420011012455-32789998899999999969897999999999-------------699999688997899998467
Q ss_pred -----ECCEEEEEEECCEEEEEECC
Q ss_conf -----68789994308939999810
Q 002615 874 -----IGGRVFVGCRDDYIYCIALE 893 (900)
Q Consensus 874 -----~~~~l~vg~~dg~l~~ld~~ 893 (900)
.+..|..|+.||.|++|+.+
T Consensus 362 ~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 362 SSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp CTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CCCCCCCCEEEEEECCCEEEEEEEE
T ss_conf 4258999999999189979997621
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.88 E-value=6.1e-19 Score=125.09 Aligned_cols=269 Identities=9% Similarity=-0.023 Sum_probs=173.2
Q ss_pred CCEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEECEEEECCCCEEEEEEECCEEEEEECCCCCEEE--EEECCCCEEE
Q ss_conf 96299995489809999789981888986499224261673599899999648989999778984799--9821991343
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYW--TFQTCGEVKC 633 (900)
Q Consensus 556 ~~~~i~igs~~g~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w--~~~~~~~~~~ 633 (900)
.+..+++++ ++.++.+|..+++....+..+.....+..+++++.++++|+.||.|+.||..++.... .+..+.....
T Consensus 28 ~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 106 (311)
T d1nr0a1 28 AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK 106 (311)
T ss_dssp TSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEE
T ss_pred CCCEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 989999996-9999999999996617974788888999994899967225567367466310111100001343357543
Q ss_pred EEEEECCCCEEEEECC--CCEEEEEECCCCEEEEEECCCCCCCCCCEEECCCC-EEEEEECCCCEEEEECCCCCCEEEEE
Q ss_conf 1267479988999447--99099998789969984104985434753631598-99999179919999917987403468
Q 002615 634 QPVVDAPRQLIWCGSH--DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHD-VLYVASTSGRLTAISVKALPFHTLWL 710 (900)
Q Consensus 634 ~~~~~~~~~~i~~gs~--dg~i~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~-~l~v~t~~g~i~~~d~~~~~g~~~w~ 710 (900)
...+.+++..+++++. +..+..|+.++++.......+.....+..+.+++. .+..++.+|.+..|+.++ ++....
T Consensus 107 ~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~--~~~~~~ 184 (311)
T d1nr0a1 107 DISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP--FKFKST 184 (311)
T ss_dssp EEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT--BEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC--CCCCCC
T ss_conf 323331110001111221111111111111111111111111111111211101200011221111111111--111111
Q ss_pred EECCCCCEEEEEEEECCCEEEEEEECCCEEEEC-CCCCEEEEECCCC--------CEECCCCCCCCCCCEEEEEEECCEE
Q ss_conf 530785111123430799899995259199997-9997776512799--------6100563233489949999428929
Q 002615 711 HELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG--------PIFAGPCTSFALPSQVLICSRNGSI 781 (900)
Q Consensus 711 ~~~~~~~~~s~~~~~~~~~i~~g~~~g~i~~~d-~~G~~~w~~~~~~--------~~~~~~~~~~~~~~~i~~gs~dg~i 781 (900)
...+.....+....+++..++.++.++.+..|+ .+++....+.... .+.+.. ....+..++.++.||.|
T Consensus 185 ~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~--~s~~~~~l~tgs~Dg~v 262 (311)
T d1nr0a1 185 FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT--WSPDGTKIASASADKTI 262 (311)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEE--ECTTSSEEEEEETTSEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCEEEEEECCCEE
T ss_conf 1111111111234764221211111111100012446411222111111100246532102--47889999999379969
Q ss_pred EEEECCCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEE
Q ss_conf 9996889844338824993420432232200013445678809999848993999996
Q 002615 782 YSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 839 (900)
Q Consensus 782 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vg~~~G~i~~~d~ 839 (900)
+.||..+++++.+++.+......... ....+..+++++.+|.|.+||.
T Consensus 263 ~iwd~~t~~~~~~l~~~~~~~~~~~~----------~~~~~~~l~s~s~dG~i~~wd~ 310 (311)
T d1nr0a1 263 KIWNVATLKVEKTIPVGTRIEDQQLG----------IIWTKQALVSISANGFINFVNP 310 (311)
T ss_dssp EEEETTTTEEEEEEECCSSGGGCEEE----------EEECSSCEEEEETTCCEEEEET
T ss_pred EEEECCCCCEEEEEECCCCCCCEEEE----------EEECCCEEEEEECCCEEEEEEC
T ss_conf 99999999699999799986332999----------9951999999989997999958
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.88 E-value=6.7e-19 Score=124.85 Aligned_cols=290 Identities=10% Similarity=0.012 Sum_probs=186.9
Q ss_pred ECCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEECEEEECCCCEEEEEEECCEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf 18962999954898099997899818889864992242616735998999996489899997789847999821991343
Q 002615 554 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 633 (900)
Q Consensus 554 ~~~~~~i~igs~~g~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 633 (900)
...+..++.|+.|+.|+.||..+++.+..+..+.....+..+..++..++.+..++.+..++....+....+..+.....
T Consensus 26 sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (317)
T d1vyhc1 26 HPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS 105 (317)
T ss_dssp CSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEE
T ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 38989999993899299998999979999957888677776301111011111111101110011111111000000000
Q ss_pred EEEEECCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCEEECCCCEEEEEECCCCEEEEECCCCCCEEEEEEEC
Q ss_conf 12674799889994479909999878996998410498543475363159899999179919999917987403468530
Q 002615 634 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 713 (900)
Q Consensus 634 ~~~~~~~~~~i~~gs~dg~i~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~i~~~d~~~~~g~~~w~~~~ 713 (900)
...+.+++..+++++.|+.+..||..+++....+.............+++..++.++.++.+..++..+ ++.......
T Consensus 106 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~--~~~~~~~~~ 183 (317)
T d1vyhc1 106 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT--KECKAELRE 183 (317)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--CCEEEEECC
T ss_pred EEECCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCCEEEECCCCCCEEEEEECCCEEEEEEECC--CEEEEEEEC
T ss_conf 000169985577652675235751144303468716777630000166799999992798299975125--403478824
Q ss_pred CCCCEEEEEEEECCCEEEEEEECCCEEEECCCCCEEEEECCCCCEECCCCCCCCCCCEEEEEEECCEEEEEECCCCCEEE
Q ss_conf 78511112343079989999525919999799977765127996100563233489949999428929999688984433
Q 002615 714 EVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLW 793 (900)
Q Consensus 714 ~~~~~~s~~~~~~~~~i~~g~~~g~i~~~d~~G~~~w~~~~~~~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~tG~~~w 793 (900)
........ .+..++.............. .....+..+..++.||.++.++..+++.+.
T Consensus 184 ~~~~i~~~-------------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 241 (317)
T d1vyhc1 184 HRHVVECI-------------------SWAPESSYSSISEATGSETK---KSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 241 (317)
T ss_dssp CSSCEEEE-------------------EECCSCGGGGGGGCCSCC----------CCEEEEEETTSEEEEEETTTTEEEE
T ss_pred CCCCCEEE-------------------EEEECCCCCEEECCCCCEEE---EECCCCCEEEECCCCCEEEEEECCCCCEEE
T ss_conf 77873379-------------------98632564111034563034---302588614751699789998889996889
Q ss_pred EEECCCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEE
Q ss_conf 88249934204322322000134456788099998489939999960585665555545320356530269842248636
Q 002615 794 EYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM 873 (900)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vg~~~G~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~ 873 (900)
++..+........... .+..+++++.+|.|++||.+++ +....+..+...+.+..+
T Consensus 242 ~~~~~~~~v~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~-------------~~~~~~~~h~~~V~~~~~ 297 (317)
T d1vyhc1 242 TLVGHDNWVRGVLFHS-----------GGKFILSCADDKTLRVWDYKNK-------------RCMKTLNAHEHFVTSLDF 297 (317)
T ss_dssp EEECCSSCEEEEEECS-----------SSSCEEEEETTTEEEEECCTTS-------------CCCEEEECCSSCEEEEEE
T ss_pred EEECCCCCEEEEEECC-----------CCCEEEEEECCCEEEEEECCCC-------------CEEEEECCCCCCEEEEEE
T ss_conf 9968899879999879-----------9999999979894999999999-------------199999289998899999
Q ss_pred --ECCEEEEEEECCEEEEEE
Q ss_conf --687899943089399998
Q 002615 874 --IGGRVFVGCRDDYIYCIA 891 (900)
Q Consensus 874 --~~~~l~vg~~dg~l~~ld 891 (900)
.+..|+.|+.||.|++||
T Consensus 298 s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 298 HKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CSSSSCEEEEETTSEEEEEC
T ss_pred CCCCCEEEEEECCCEEEEEC
T ss_conf 49999999992899499829
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.3e-17 Score=117.19 Aligned_cols=303 Identities=11% Similarity=0.075 Sum_probs=199.2
Q ss_pred CCEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEECEEEECCCCEEEEEEECCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 96299995489809999789981888986499224261673599899999648989999778984799982199134312
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 635 (900)
Q Consensus 556 ~~~~i~igs~~g~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 635 (900)
.+.+|+.|+.||.|+.||..+|+.+..+..+.....+..+.+ +.++.++.|+.+..++....................
T Consensus 26 ~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~--~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (342)
T d2ovrb2 26 CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM 103 (342)
T ss_dssp ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET--TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECC--CCCCCCEECCCCCCCCCCCCCCEECCCCCCEEEEEE
T ss_conf 899999991899099998999979999948899989999479--863210000011111111000000012333047652
Q ss_pred EEECCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCEEECCCCEEEEEECCCCEEEEECCCCCCEEEEEEECCC
Q ss_conf 67479988999447990999987899699841049854347536315989999917991999991798740346853078
Q 002615 636 VVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV 715 (900)
Q Consensus 636 ~~~~~~~~i~~gs~dg~i~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~i~~~d~~~~~g~~~w~~~~~~ 715 (900)
... ...+..+..++.+..++..+++................. ....+..++.++.+..++... ++.+.....+.
T Consensus 104 ~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~d~~~--~~~~~~~~~~~ 177 (342)
T d2ovrb2 104 HLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPET--ETCLHTLQGHT 177 (342)
T ss_dssp EEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGG--TEEEEEECCCS
T ss_pred ECC--CCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCEEECC--CCCEEEEECCCCEEEEEECCC--CEEEEEECCCC
T ss_conf 024--652212344403787403556300111001111000001--333024335898699952523--43667872754
Q ss_pred CCEEEEEEEECCCEEEEEEECCCEEEEC-CCCCEEEEECCCCCEECCCCCCCCCCCEEEEEEECCEEEEEECCCCCEEEE
Q ss_conf 5111123430799899995259199997-999777651279961005632334899499994289299996889844338
Q 002615 716 PAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWE 794 (900)
Q Consensus 716 ~~~~s~~~~~~~~~i~~g~~~g~i~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~tG~~~w~ 794 (900)
.. ......++..++.++.+|.+.++| .+++.+............ + ...++.++.++.||.++.|+..+++....
T Consensus 178 ~~--~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~--~-~~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 252 (342)
T d2ovrb2 178 NR--VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG--M-ELKDNILVSGNADSTVKIWDIKTGQCLQT 252 (342)
T ss_dssp SC--EEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEE--E-EEETTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred CC--CCCCCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEE--E-ECCCCEEEEECCCCEEEEEECCCCCCCCC
T ss_conf 44--2100689999999958993999525565365674166532057--7-06899999974898899986554422111
Q ss_pred EECCCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECC-----CCCCCC
Q ss_conf 824993420432232200013445678809999848993999996058566555554532035653026-----984224
Q 002615 795 YSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLEL-----QGDIFS 869 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vg~~~G~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~s 869 (900)
+............ ...+++.++.++.||.|++||.+++ +....+.. +...+.
T Consensus 253 ~~~~~~~~~~~~~----------~~~~~~~~~s~s~Dg~i~iwd~~tg-------------~~i~~~~~~~~~~~~~~v~ 309 (342)
T d2ovrb2 253 LQGPNKHQSAVTC----------LQFNKNFVITSSDDGTVKLWDLKTG-------------EFIRNLVTLESGGSGGVVW 309 (342)
T ss_dssp ECSTTSCSSCEEE----------EEECSSEEEEEETTSEEEEEETTTC-------------CEEEEEEECTTGGGTCEEE
T ss_pred CCCCCEEEECEEE----------CCCCCCEEEEECCCCEEEEEECCCC-------------CEEEEEECCCCCCCCCCEE
T ss_conf 2210001101000----------0137984499908998999999999-------------7989986234789889789
Q ss_pred CCEEEC--CEEEEEEECC----EEEEEECCC
Q ss_conf 863668--7899943089----399998104
Q 002615 870 SPVMIG--GRVFVGCRDD----YIYCIALET 894 (900)
Q Consensus 870 s~~~~~--~~l~vg~~dg----~l~~ld~~t 894 (900)
+..... ..+.+|+.|| .|+.||+..
T Consensus 310 ~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 310 RIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp EEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEECCCCCEEEEEECCCCCEEEEEEEECCC
T ss_conf 9998799989999968999704899993899
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.87 E-value=2.5e-18 Score=121.50 Aligned_cols=266 Identities=11% Similarity=0.053 Sum_probs=167.9
Q ss_pred CCCCCCCCCCCC-----CC--EEEEECCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEECEEEECCCCEEEEEEEC
Q ss_conf 310012666335-----62--59951896299995489809999789981888986499224261673599899999648
Q 002615 536 LWKVHMESCVDA-----SP--LVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK 608 (900)
Q Consensus 536 ~W~~~~~~~v~~-----sp--~v~~~~~~~~i~igs~~g~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~d 608 (900)
+|+.++++++.. .+ .+.....+..+..+..++.+..++....+.......+........+..++..+++++.|
T Consensus 43 iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 122 (317)
T d1vyhc1 43 VWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD 122 (317)
T ss_dssp EEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred EEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCC
T ss_conf 99899997999995788867777630111101111111110111001111111100000000000016998557765267
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCEEECCCCEEEE
Q ss_conf 98999977898479998219913431267479988999447990999987899699841049854347536315989999
Q 002615 609 GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYV 688 (900)
Q Consensus 609 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v 688 (900)
+.+..||..+++....+..+........+.+++..+++++.|+.++.++..+++....+...........
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~---------- 192 (317)
T d1vyhc1 123 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS---------- 192 (317)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE----------
T ss_pred CCEEEEECCCCEEEEEECCCCCCCEEEECCCCCCEEEEEECCCEEEEEEECCCEEEEEEECCCCCCEEEE----------
T ss_conf 5235751144303468716777630000166799999992798299975125403478824778733799----------
Q ss_pred EECCCCEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCEEEEEEECCCEEEEC-CCCCEEEEECCCC-CEECCCCCCC
Q ss_conf 9179919999917987403468530785111123430799899995259199997-9997776512799-6100563233
Q 002615 689 ASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG-PIFAGPCTSF 766 (900)
Q Consensus 689 ~t~~g~i~~~d~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~g~~~g~i~~~d-~~G~~~w~~~~~~-~~~~~~~~~~ 766 (900)
+.... .... . ..............+..++.++.++.+..++ .+++.+.++.... ++.+.. . .
T Consensus 193 ---------~~~~~--~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~-~-~ 256 (317)
T d1vyhc1 193 ---------WAPES--SYSS--I-SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL-F-H 256 (317)
T ss_dssp ---------ECCSC--GGGG--G-GGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE-E-C
T ss_pred ---------EEECC--CCCE--E-ECCCCCEEEEECCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEE-E-C
T ss_conf ---------86325--6411--1-0345630343025886147516997899988899968899968899879999-8-7
Q ss_pred CCCCEEEEEEECCEEEEEECCCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEE
Q ss_conf 489949999428929999688984433882499342043223220001344567880999984899399999
Q 002615 767 ALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILR 838 (900)
Q Consensus 767 ~~~~~i~~gs~dg~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vg~~~G~i~~~d 838 (900)
..+..++.++.||.|+.||..+++.+..+..+...+....+.. .+..+++++.||.|++||
T Consensus 257 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~-----------~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 257 SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK-----------TAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp SSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECS-----------SSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECC-----------CCCEEEEEECCCEEEEEC
T ss_conf 9999999997989499999999919999928999889999949-----------999999992899499829
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=1.5e-17 Score=116.81 Aligned_cols=264 Identities=13% Similarity=0.129 Sum_probs=171.1
Q ss_pred CCEEEEEECCCCEEEEEECCCCCEEEEEECCCCEE--ECEEEECCCCEEEEEEECCEEEEEECCCCCEEEEEECCC----
Q ss_conf 96299995489809999789981888986499224--261673599899999648989999778984799982199----
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIE--CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG---- 629 (900)
Q Consensus 556 ~~~~i~igs~~g~i~~~d~~tG~~~w~~~~~~~~~--~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~---- 629 (900)
.++.++.|+.|+.++.|+..+++............ .......++..++.++.|+.+..||..++..........
T Consensus 63 ~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 142 (355)
T d1nexb2 63 HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL 142 (355)
T ss_dssp TTTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCE
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECCCCCCCEECC
T ss_conf 99999999645244321111111111110011111111111112322045543888689998567730012465200010
Q ss_pred ---------CE--------EEEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCEEECCCCEEEEEECC
Q ss_conf ---------13--------4312674799889994479909999878996998410498543475363159899999179
Q 002615 630 ---------EV--------KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS 692 (900)
Q Consensus 630 ---------~~--------~~~~~~~~~~~~i~~gs~dg~i~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~ 692 (900)
.. ........++..++.+..|+.+..||..+++.+................+.+..++.++.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 222 (355)
T d1nexb2 143 VFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD 222 (355)
T ss_dssp EESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred CEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCC
T ss_conf 00001123401210110022210000256334421144204443013110001100012332111111210021012456
Q ss_pred CCEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCEEEEEEECCCEEEEC-CCCCEEEEECCCCCEECCCCCCCCCCCE
Q ss_conf 919999917987403468530785111123430799899995259199997-9997776512799610056323348994
Q 002615 693 GRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQ 771 (900)
Q Consensus 693 g~i~~~d~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~g~~~g~i~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~ 771 (900)
+.+..++..+ +..+.....+.....+. ..+++.++.++.+|.+..|| .++.......... +....+ ...++.
T Consensus 223 ~~i~i~d~~~--~~~~~~~~~h~~~v~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~--~~~~~~ 295 (355)
T d1nexb2 223 TTIRIWDLEN--GELMYTLQGHTALVGLL--RLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTN-LSAITT--FYVSDN 295 (355)
T ss_dssp SCEEEEETTT--CCEEEEECCCSSCCCEE--EECSSEEEEECTTSEEEEEETTTCCEEEEEECTT-CCCCCE--EEECSS
T ss_pred CEEEEEECCC--CCCCCCCCCCCCCCCCC--CCCCCEEEEEECCCCCCCCCCCCCCEECCCCCCC-CEEEEE--ECCCCC
T ss_conf 3687630122--11111111111111111--2321003332011111111111111000124688-229999--849998
Q ss_pred EEEEEECCEEEEEECCCCCEEEEEEC-CCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEE
Q ss_conf 99994289299996889844338824-99342043223220001344567880999984899399999
Q 002615 772 VLICSRNGSIYSFEQESGNLLWEYSV-GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILR 838 (900)
Q Consensus 772 i~~gs~dg~i~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vg~~~G~i~~~d 838 (900)
+++++.||.|+.||.++|+++..... +...+....... +..++.++.||.+++|.
T Consensus 296 ~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~------------~~~~~~~s~dg~~~l~~ 351 (355)
T d1nexb2 296 ILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG------------KTLVAAVEKDGQSFLEI 351 (355)
T ss_dssp EEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEET------------TEEEEEEESSSCEEEEE
T ss_pred EEEEEECCEEEEEECCCCCEEEEEECCCCCCEEEEEECC------------CEEEEEEECCCCEEEEE
T ss_conf 999980997999999999798888458999899999839------------91999998989099999
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=8.8e-18 Score=118.23 Aligned_cols=283 Identities=11% Similarity=0.104 Sum_probs=185.4
Q ss_pred CCCCCCCCCCC-----CCCEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEECEEEECCCCEEEEEEECCE
Q ss_conf 31001266633-----5625995189629999548980999978998188898649922426167359989999964898
Q 002615 536 LWKVHMESCVD-----ASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGK 610 (900)
Q Consensus 536 ~W~~~~~~~v~-----~sp~v~~~~~~~~i~igs~~g~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~ 610 (900)
+|+..+++++. ..++....-....++.|+.++.+..++.................. ........+..+..++.
T Consensus 41 vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~ 118 (342)
T d2ovrb2 41 VWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR--CMHLHEKRVVSGSRDAT 118 (342)
T ss_dssp EEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE--EEEEETTEEEEEETTSE
T ss_pred EEECCCCCEEEEEECCCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCEECCCCCCEEEE--EEECCCCCCCCCCCCEE
T ss_conf 9989999799999488999899994798632100000111111110000000123330476--52024652212344403
Q ss_pred EEEEECCCCCEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCEEECCCCEEEEEE
Q ss_conf 99997789847999821991343126747998899944799099998789969984104985434753631598999991
Q 002615 611 IYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAS 690 (900)
Q Consensus 611 l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t 690 (900)
+..++..+++............... ......+..++.++.+..+|...++.+..+......... ...++..++.++
T Consensus 119 i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~ 194 (342)
T d2ovrb2 119 LRVWDIETGQCLHVLMGHVAAVRCV--QYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS--LQFDGIHVVSGS 194 (342)
T ss_dssp EEEEESSSCCEEEEEECCSSCEEEE--EECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE--EEECSSEEEEEE
T ss_pred EEEEECCCCCCEEEEECCCCCCEEE--CCCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCC--CCCCCCEEEEEE
T ss_conf 7874035563001110011110000--013330243358986999525234366787275444210--068999999995
Q ss_pred CCCCEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCEEEEEEECCCEEEEC-CCCCEEEEECCCCCE-ECCCCCCCCC
Q ss_conf 79919999917987403468530785111123430799899995259199997-999777651279961-0056323348
Q 002615 691 TSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPI-FAGPCTSFAL 768 (900)
Q Consensus 691 ~~g~i~~~d~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~g~~~g~i~~~d-~~G~~~w~~~~~~~~-~~~~~~~~~~ 768 (900)
.+|.+..++... ++.+.....+..... .+..+++.+++++.++.+.+|+ .+++........... ....++ ...
T Consensus 195 ~dg~i~~~d~~~--~~~~~~~~~~~~~v~--~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~ 269 (342)
T d2ovrb2 195 LDTSIRVWDVET--GNCIHTLTGHQSLTS--GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL-QFN 269 (342)
T ss_dssp TTSCEEEEETTT--CCEEEEECCCCSCEE--EEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEE-EEC
T ss_pred CCCEEEEEECCC--CEEEEEECCCCCCEE--EEECCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECEEEC-CCC
T ss_conf 899399952556--536567416653205--770689999997489889998655442211122100011010000-137
Q ss_pred CCEEEEEEECCEEEEEECCCCCEEEEEECCC------CEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCC----EEEEE
Q ss_conf 9949999428929999688984433882499------3420432232200013445678809999848993----99999
Q 002615 769 PSQVLICSRNGSIYSFEQESGNLLWEYSVGD------PITASAYIDEHLQLKLESCLSIDRLVCICTSSGS----IHILR 838 (900)
Q Consensus 769 ~~~i~~gs~dg~i~~~d~~tG~~~w~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~vg~~~G~----i~~~d 838 (900)
++.++.++.||.|+.||.++|+.+.++.... .+.... .. ..+..+++|+.+|. |++||
T Consensus 270 ~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~-~s-----------~~~~~la~g~~dGt~~~~l~~~D 337 (342)
T d2ovrb2 270 KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR-AS-----------NTKLVCAVGSRNGTEETKLLVLD 337 (342)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEE-EC-----------SSEEEEEEECSSSSSCCEEEEEE
T ss_pred CCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEE-EC-----------CCCCEEEEEECCCCCEEEEEEEE
T ss_conf 9844999089989999999997989986234789889789999-87-----------99989999968999704899993
Q ss_pred EEC
Q ss_conf 605
Q 002615 839 VNL 841 (900)
Q Consensus 839 ~~~ 841 (900)
.+.
T Consensus 338 f~~ 340 (342)
T d2ovrb2 338 FDV 340 (342)
T ss_dssp CCC
T ss_pred CCC
T ss_conf 899
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.86 E-value=2.2e-17 Score=115.90 Aligned_cols=271 Identities=10% Similarity=-0.022 Sum_probs=168.9
Q ss_pred ECCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEECEEEECCCCEEEEEEECCEEEEEECCCCCEEE----EEECCC
Q ss_conf 1896299995489809999789981888986499224261673599899999648989999778984799----982199
Q 002615 554 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYW----TFQTCG 629 (900)
Q Consensus 554 ~~~~~~i~igs~~g~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w----~~~~~~ 629 (900)
...+.++..|+.||.|..||..+++....+..+.....+..+.+++..+++++.|+.+..++.......+ ....+.
T Consensus 64 s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~ 143 (340)
T d1tbga_ 64 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT 143 (340)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCS
T ss_pred CCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCEEECCCCCCCCCCCCCCEECCCCC
T ss_conf 89999999997899555631021025799724653377567601211443101332010133222212221110013542
Q ss_pred CEEEEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCEEECCCCEEEEEECCCCEEEEECCCCCCEEEE
Q ss_conf 13431267479988999447990999987899699841049854347536315989999917991999991798740346
Q 002615 630 EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLW 709 (900)
Q Consensus 630 ~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~i~~~d~~~~~g~~~w 709 (900)
......... ....+.....+.....++..+.........................++.+..++.+..||..+ ++.+.
T Consensus 144 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~--~~~~~ 220 (340)
T d1tbga_ 144 GYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE--GMCRQ 220 (340)
T ss_dssp SCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT--TEEEE
T ss_pred CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCC--CCEEE
T ss_conf 110111111-111111112445432001232211111233101576300124421268760573699999999--94889
Q ss_pred EEECCCCCEEEEEEEECCCEEEEEEECCCEEEEC-CCCCEEEEECCCCCEECCCCCCCC-CCCEEEEEEECCEEEEEECC
Q ss_conf 8530785111123430799899995259199997-999777651279961005632334-89949999428929999688
Q 002615 710 LHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFA-LPSQVLICSRNGSIYSFEQE 787 (900)
Q Consensus 710 ~~~~~~~~~~s~~~~~~~~~i~~g~~~g~i~~~d-~~G~~~w~~~~~~~~~~~~~~~~~-~~~~i~~gs~dg~i~~~d~~ 787 (900)
....+.....+..+.+++..+++++.++.+..++ ........+...........+... .+..+++++.||.|+.||..
T Consensus 221 ~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~ 300 (340)
T d1tbga_ 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETT
T ss_pred EEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECC
T ss_conf 99578898589999799899999969996999752122111111122445745899998999999999797989999999
Q ss_pred CCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEE
Q ss_conf 984433882499342043223220001344567880999984899399999
Q 002615 788 SGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILR 838 (900)
Q Consensus 788 tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vg~~~G~i~~~d 838 (900)
+++.+..+..+...+....+.. ++..++.|+.||.|++||
T Consensus 301 ~~~~~~~~~~H~~~V~~l~~s~-----------d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 301 KADRAGVLAGHDNRVSCLGVTD-----------DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TCCEEEEECCCSSCEEEEEECT-----------TSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEECCCCCCEEEEEEEC-----------CCCEEEEECCCCEEEEEC
T ss_conf 9939899848999789999908-----------999999990699799859
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.86 E-value=1.1e-17 Score=117.60 Aligned_cols=272 Identities=8% Similarity=-0.031 Sum_probs=173.5
Q ss_pred CEEEECCCCEEEEEEECCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCEEEEE--ECC
Q ss_conf 616735998999996489899997789847999821991343126747998899944799099998789969984--104
Q 002615 592 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYK--LPC 669 (900)
Q Consensus 592 ~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~~g~~~w~--~~~ 669 (900)
....+++++.++.+ .++.++.+|..++.....+..+.....+..+.+++..+++|+.||.+..||..+++...+ +..
T Consensus 22 ~~a~~~~g~~l~~~-~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~ 100 (311)
T d1nr0a1 22 VLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPV 100 (311)
T ss_dssp CCEECTTSSEEEEE-ETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEEC
T ss_pred EEEECCCCCEEEEE-ECCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCCCCCCCCCC
T ss_conf 99996998999999-69999999999996617974788888999994899967225567367466310111100001343
Q ss_pred CCCCCCCCEEECCCCEEEEEECC--CCEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCE-EEEEEECCCEEEEC-CC
Q ss_conf 98543475363159899999179--9199999179874034685307851111234307998-99995259199997-99
Q 002615 670 GGSIFGSPAIDEVHDVLYVASTS--GRLTAISVKALPFHTLWLHELEVPAFASLCITSANRH-VICCLVDGHVVALD-SS 745 (900)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~v~t~~--g~i~~~d~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~-i~~g~~~g~i~~~d-~~ 745 (900)
......+..+.+++..+++++.+ ..+..++.++ ++.......+.....+..+.+++.. ++.|+.++.+.+|| .+
T Consensus 101 ~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~--~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~ 178 (311)
T d1nr0a1 101 FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP 178 (311)
T ss_dssp SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC
T ss_conf 35754332333111000111122111111111111--1111111111111111111211101200011221111111111
Q ss_pred CCEEEEECCC-CCEECCCCCCCCCCCEEEEEEECCEEEEEECCCCCEEEEEECCC--------CEECCCCCCCCCCCCCC
Q ss_conf 9777651279-96100563233489949999428929999688984433882499--------34204322322000134
Q 002615 746 GSIIWRCRTG-GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGD--------PITASAYIDEHLQLKLE 816 (900)
Q Consensus 746 G~~~w~~~~~-~~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~tG~~~w~~~~~~--------~~~~~~~~~~~~~~~~~ 816 (900)
++........ .++.+.. . ...+..+++++.||.+..|+..++.....++... .+....+
T Consensus 179 ~~~~~~~~~~~~~i~~v~-~-~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~---------- 246 (311)
T d1nr0a1 179 FKFKSTFGEHTKFVHSVR-Y-NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW---------- 246 (311)
T ss_dssp BEEEEEECCCSSCEEEEE-E-CTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEE----------
T ss_pred CCCCCCCCCCCCCCCCCC-C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------
T ss_conf 111111111111111123-4-7642212111111111000124464112221111111002465321024----------
Q ss_pred CCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCC---CCEEECCEEEEEEECCEEEEEECC
Q ss_conf 45678809999848993999996058566555554532035653026984224---863668789994308939999810
Q 002615 817 SCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFS---SPVMIGGRVFVGCRDDYIYCIALE 893 (900)
Q Consensus 817 ~~~~~~~~i~vg~~~G~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s---s~~~~~~~l~vg~~dg~l~~ld~~ 893 (900)
.+.+..+++|+.||.|++||.+++ +....+..+..... +....++.+++++.||.+..||++
T Consensus 247 --s~~~~~l~tgs~Dg~v~iwd~~t~-------------~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 247 --SPDGTKIASASADKTIKIWNVATL-------------KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp --CTTSSEEEEEETTSEEEEEETTTT-------------EEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred --CCCCCEEEEEECCCEEEEEECCCC-------------CEEEEEECCCCCCCEEEEEEECCCEEEEEECCCEEEEEECC
T ss_conf --788999999937996999999999-------------69999979998633299999519999999899979999588
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.85 E-value=1.8e-16 Score=110.48 Aligned_cols=278 Identities=13% Similarity=0.039 Sum_probs=179.5
Q ss_pred ECCCCEEECEEEECCCCEEEEEEECCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCEE
Q ss_conf 64992242616735998999996489899997789847999821991343126747998899944799099998789969
Q 002615 584 KLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRC 663 (900)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~~g~~ 663 (900)
..+.....+..+++++.+++.|+.||.|+.||..+++....+..+........+.+++..+++++.|+.+..++......
T Consensus 52 ~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~ 131 (340)
T d1tbga_ 52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG 131 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCS
T ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCEEECCCCCCCCC
T ss_conf 88789888999989999999997899555631021025799724653377567601211443101332010133222212
Q ss_pred EE----EECCCCCCCCCCEEECCCCEEEEEECCCCEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCEEEEEEECCCE
Q ss_conf 98----41049854347536315989999917991999991798740346853078511112343079989999525919
Q 002615 664 VY----KLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHV 739 (900)
Q Consensus 664 ~w----~~~~~~~~~~~~~~~~~~~~l~v~t~~g~i~~~d~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~g~~~g~i 739 (900)
.+ ............... ....+.....+.....+.... .........................++.+..++.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v 208 (340)
T d1tbga_ 132 NVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIET--GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTT--TEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEE
T ss_pred CCCCCEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCEE
T ss_conf 221110013542110111111-111111112445432001232--21111123310157630012442126876057369
Q ss_pred EEEC-CCCCEEEEECCC-CCEECCCCCCCCCCCEEEEEEECCEEEEEECCCCCEEEEEECCCC---EECCCCCCCCCCCC
Q ss_conf 9997-999777651279-961005632334899499994289299996889844338824993---42043223220001
Q 002615 740 VALD-SSGSIIWRCRTG-GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDP---ITASAYIDEHLQLK 814 (900)
Q Consensus 740 ~~~d-~~G~~~w~~~~~-~~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~tG~~~w~~~~~~~---~~~~~~~~~~~~~~ 814 (900)
..|| .+++.+..+... .++.+.. . ...+..+++++.||.++.++.........+..... +....+
T Consensus 209 ~i~d~~~~~~~~~~~~h~~~i~~v~-~-~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------- 278 (340)
T d1tbga_ 209 KLWDVREGMCRQTFTGHESDINAIC-F-FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF-------- 278 (340)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEE-E-CTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE--------
T ss_pred EEEECCCCCEEEEEECCCCCEEEEE-E-CCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEE--------
T ss_conf 9999999948899957889858999-9-79989999996999699975212211111112244574589999--------
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEE--ECCEEEEEEECCEEEEEE
Q ss_conf 34456788099998489939999960585665555545320356530269842248636--687899943089399998
Q 002615 815 LESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCIA 891 (900)
Q Consensus 815 ~~~~~~~~~~i~vg~~~G~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~--~~~~l~vg~~dg~l~~ld 891 (900)
...+..+++|+.+|.|++||..++ +....+..+...+.+..+ ++..|+.|+.||.|++||
T Consensus 279 ----s~~~~~l~~g~~dg~i~iwd~~~~-------------~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 279 ----SKSGRLLLAGYDDFNCNVWDALKA-------------DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ----CSSSCEEEEEETTSCEEEEETTTC-------------CEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ----CCCCCEEEEEECCCEEEEEECCCC-------------CEEEEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEC
T ss_conf ----899999999979798999999999-------------39899848999789999908999999990699799859
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=1.2e-16 Score=111.50 Aligned_cols=271 Identities=11% Similarity=0.008 Sum_probs=132.3
Q ss_pred EECCCCEEEEEEECCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCC
Q ss_conf 73599899999648989999778984799982199134312674799889994479909999878996998410498543
Q 002615 595 VLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIF 674 (900)
Q Consensus 595 ~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~~g~~~w~~~~~~~~~ 674 (900)
+..++.+++.|+.||.|..||..+++.+..+..+.....+..+ ++..+++++.|+.+..|+...+.............
T Consensus 21 ~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~ 98 (293)
T d1p22a2 21 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV 98 (293)
T ss_dssp EECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCE
T ss_pred EEECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEC--CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9876999999928993999999999199999267787763423--63002100111011000002464100111111000
Q ss_pred CCCEEECCCCEEEEEECCCCEEEEECCCCCCEEEEE-EECCCCCEEEEEEEECCCEEEEEEECCCEEEEC-CCCCEEEEE
Q ss_conf 475363159899999179919999917987403468-530785111123430799899995259199997-999777651
Q 002615 675 GSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWL-HELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRC 752 (900)
Q Consensus 675 ~~~~~~~~~~~l~v~t~~g~i~~~d~~~~~g~~~w~-~~~~~~~~~s~~~~~~~~~i~~g~~~g~i~~~d-~~G~~~w~~ 752 (900)
... ....+.+..+..++.+..++........... ...+.. ...........++.++.++.+..+| .+++.+..+
T Consensus 99 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~ 174 (293)
T d1p22a2 99 LHL--RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA--AVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL 174 (293)
T ss_dssp EEE--ECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSS--CEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCC--CCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCC--CCCCCEECCCCCCCCCCCCCEEEECCCCCCEEEEE
T ss_conf 011--11110000013566306861344544421210001135--43110000022011069986041007888388997
Q ss_pred CCCCCEECCCCCCCCCCCEEEEEEECCEEEEEECCCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 27996100563233489949999428929999688984433882499342043223220001344567880999984899
Q 002615 753 RTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSG 832 (900)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vg~~~G 832 (900)
......... + ...+..++.++.||.++.||..+++.+.............. ..+..+++++.+|
T Consensus 175 ~~~~~~v~~--~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~-------------~~~~~l~sg~~dg 238 (293)
T d1p22a2 175 NGHKRGIAC--L-QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR-------------FDNKRIVSGAYDG 238 (293)
T ss_dssp ECCSSCEEE--E-EEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE-------------CCSSEEEEEETTS
T ss_pred CCCCCCCCC--C-CCCCCEEEEECCCCEEEEEECCCCEEEEEECCCCEEEEECC-------------CCCEEEEEECCCC
T ss_conf 155445322--1-68987588765899899986655614665214310000014-------------5410799986799
Q ss_pred CEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEECCEEEEEEECCEEEEEE
Q ss_conf 39999960585665555545320356530269842248636687899943089399998
Q 002615 833 SIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIA 891 (900)
Q Consensus 833 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~~~~~l~vg~~dg~l~~ld 891 (900)
.|++||...+........ ......+.-+...+.+...++..|+.++.||.+++||
T Consensus 239 ~i~iwd~~~~~~~~~~~~----~~~~~~~~~H~~~V~~v~~d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 239 KIKVWDLVAALDPRAPAG----TLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp CEEEEEHHHHTSTTSCTT----TTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred EEEEEECCCCCCCCCCCC----CEEEEEECCCCCCEEEEEECCCEEEEEECCCEEEEEC
T ss_conf 799998888864445677----5455784588998899997199999992299899959
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.80 E-value=1.3e-14 Score=99.36 Aligned_cols=265 Identities=12% Similarity=0.146 Sum_probs=176.7
Q ss_pred EEEEEE-CCCCEEEEEECCCCCEEEEEECCCCEEECEEEECCCCEEEEEE-ECCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 299995-4898099997899818889864992242616735998999996-48989999778984799982199134312
Q 002615 558 IYLFVG-SHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGC-YKGKIYFLDYLTGDIYWTFQTCGEVKCQP 635 (900)
Q Consensus 558 ~~i~ig-s~~g~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~-~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 635 (900)
.++|+. +.++.|..||..+++++.+++++... ....+++++.++|++. .++.|+.||..+++.+..+..+..... .
T Consensus 2 ~~~yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p-~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~-~ 79 (301)
T d1l0qa2 2 TFAYIANSESDNISVIDVTSNKVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQG-V 79 (301)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSSSE-EEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEE-E
T ss_pred EEEEEEECCCCEEEEEECCCCEEEEEEECCCCC-EEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCC-C
T ss_conf 699999789998999999999599999889983-69999289899999978999899999998941032000246431-1
Q ss_pred EEECCCCEEEE-ECCCCEEEEEECCCCEEEEEECCCCCCCCCCEEECCCCEEEEEE-CCCCEEEEECCCCCCEEEEEEEC
Q ss_conf 67479988999-44799099998789969984104985434753631598999991-79919999917987403468530
Q 002615 636 VVDAPRQLIWC-GSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHEL 713 (900)
Q Consensus 636 ~~~~~~~~i~~-gs~dg~i~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t-~~g~i~~~d~~~~~g~~~w~~~~ 713 (900)
.+..++..+++ +..++.++.++..+++............ ...+.+++..+++.. .++.+..++..+ +........
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~dg~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 156 (301)
T d1l0qa2 80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPL-GLALSPDGKKLYVTNNGDKTVSVINTVT--KAVINTVSV 156 (301)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEETTTTEEEEEETTT--TEEEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCE-EEEEECCCCEEEEEECCCCCEEEEECCC--CCEEEECCC
T ss_conf 0001111111111111001100124302432024444423-7876058971554201111001100014--630353156
Q ss_pred CCCCEEEEEEEECCCEEEEEEECCC-EEEEC-CCCCEEEEECCCCCEECCCCCCCCCCCEEEEEEEC---CEEEEEECCC
Q ss_conf 7851111234307998999952591-99997-99977765127996100563233489949999428---9299996889
Q 002615 714 EVPAFASLCITSANRHVICCLVDGH-VVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRN---GSIYSFEQES 788 (900)
Q Consensus 714 ~~~~~~s~~~~~~~~~i~~g~~~g~-i~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~i~~gs~d---g~i~~~d~~t 788 (900)
.... .......++..++++..+.. +..++ ...+............... + ...+..++++..+ +.++.+|..+
T Consensus 157 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~g~~~~v~~~~~~~~~v~v~D~~t 233 (301)
T d1l0qa2 157 GRSP-KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIA-V-NPEGTKAYVTNVDKYFNTVSMIDTGT 233 (301)
T ss_dssp CSSE-EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEE-E-CTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred CCCC-EEEEEECCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCEEE-C-CCCCCCCCCCCCCCEEEEEEEEECCC
T ss_conf 7884-2888604654013101211111111111000111013357750311-0-11110111100210000232365699
Q ss_pred CCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCEEEEE-ECCCCCEEEEEEECC
Q ss_conf 844338824993420432232200013445678809999-848993999996058
Q 002615 789 GNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCI-CTSSGSIHILRVNLD 842 (900)
Q Consensus 789 G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v-g~~~G~i~~~d~~~~ 842 (900)
+++...+..+..+....+.. ++..+|+ +..+|.|.+||.+++
T Consensus 234 ~~~~~~~~~~~~~~~va~sp------------dg~~l~va~~~~~~i~v~D~~t~ 276 (301)
T d1l0qa2 234 NKITARIPVGPDPAGIAVTP------------DGKKVYVALSFCNTVSVIDTATN 276 (301)
T ss_dssp TEEEEEEECCSSEEEEEECT------------TSSEEEEEETTTTEEEEEETTTT
T ss_pred CEEEEEECCCCCEEEEEEEC------------CCCEEEEEECCCCEEEEEECCCC
T ss_conf 81999984899877999918------------98999999899996999999999
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.78 E-value=3.1e-15 Score=103.11 Aligned_cols=276 Identities=10% Similarity=0.031 Sum_probs=170.3
Q ss_pred CEEEEEECCCCEEEEEECCCCCEEEEEECCC--CEEECEEEECCCCEEEE-EEECCEEEEEECCCCCEEEEEECCCCE--
Q ss_conf 6299995489809999789981888986499--22426167359989999-964898999977898479998219913--
Q 002615 557 DIYLFVGSHSHKFICADAKRSSVLWEIKLEG--RIECSAAVLADFSQVVV-GCYKGKIYFLDYLTGDIYWTFQTCGEV-- 631 (900)
Q Consensus 557 ~~~i~igs~~g~i~~~d~~tG~~~w~~~~~~--~~~~~~~~~~~~~~i~v-g~~dg~l~~~d~~tG~~~w~~~~~~~~-- 631 (900)
+.+++.++.++.|+.||..+++++.....+. ....+..+++|+.++|+ ++.++.|+.||..+|+.++....+...
T Consensus 1 ~~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~ 80 (337)
T d1pbyb_ 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER 80 (337)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred CEEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCC
T ss_conf 96999976799899999999949999987788998237999999899999978999499999999929888724777312
Q ss_pred ---EEEEEEECCCCEEEEEC------------CCCEEEEEECCCCEEEEEECCCCCCCCCCEEECCCCEEEEEECCCCEE
Q ss_conf ---43126747998899944------------799099998789969984104985434753631598999991799199
Q 002615 632 ---KCQPVVDAPRQLIWCGS------------HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLT 696 (900)
Q Consensus 632 ---~~~~~~~~~~~~i~~gs------------~dg~i~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~i~ 696 (900)
.....+.+++..++++. .+..+..+|..+++.++.......+ ....+.+++..+++++ +...
T Consensus 81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~--~~~~ 157 (337)
T d1pbyb_ 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQI-TMLAWARDGSKLYGLG--RDLH 157 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSC-CCEEECTTSSCEEEES--SSEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCEEECCCCCCEEEEECCCCCCC-EEEEECCCCCEEEEEC--CCCC
T ss_conf 540254898687757999504776203420345552120356677598841456872-1899868888899971--7750
Q ss_pred EEECCCCCCEEEEEEECCCCCEE---EE-----EEE-ECCCEEEE--------------EEECCCEEEEC-CCCCEEEEE
Q ss_conf 99917987403468530785111---12-----343-07998999--------------95259199997-999777651
Q 002615 697 AISVKALPFHTLWLHELEVPAFA---SL-----CIT-SANRHVIC--------------CLVDGHVVALD-SSGSIIWRC 752 (900)
Q Consensus 697 ~~d~~~~~g~~~w~~~~~~~~~~---s~-----~~~-~~~~~i~~--------------g~~~g~i~~~d-~~G~~~w~~ 752 (900)
.++..+ ++..+.......... .+ ... ...+.... ...++.+..++ .+|......
T Consensus 158 ~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (337)
T d1pbyb_ 158 VMDPEA--GTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE 235 (337)
T ss_dssp EEETTT--TEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred EEEEEC--CCEEEEEECCCCCCCCEECCCCCEEECCCCCCCEEEEEEEEEEECCCEEEECCCCCCEEEEECCCCCEEEEE
T ss_conf 566303--727888614775433113577631401466531246632444103660454036761799986888588898
Q ss_pred --CCCCCEECCCCCCCCCCCEEEEEEECCEEEEEECCCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf --279961005632334899499994289299996889844338824993420432232200013445678809999848
Q 002615 753 --RTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTS 830 (900)
Q Consensus 753 --~~~~~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vg~~ 830 (900)
......+... ...++....+ .++.+..||.++++.++....+..+....+.. ++..+|++..
T Consensus 236 ~~~~~~~~~~~~---~~~~~~~~~~-~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~------------dG~~l~v~~~ 299 (337)
T d1pbyb_ 236 VRIMDVFYFSTA---VNPAKTRAFG-AYNVLESFDLEKNASIKRVPLPHSYYSVNVST------------DGSTVWLGGA 299 (337)
T ss_dssp EEECSSCEEEEE---ECTTSSEEEE-EESEEEEEETTTTEEEEEEECSSCCCEEEECT------------TSCEEEEESB
T ss_pred ECCCCCCEEEEE---ECCCCEEEEE-CCCCEEEEECCCCCEEEEECCCCCEEEEEECC------------CCCEEEEEEC
T ss_conf 328875058887---4266139997-35528999898896999974899889999978------------9999999949
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 993999996058566555554532035653026984
Q 002615 831 SGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGD 866 (900)
Q Consensus 831 ~G~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 866 (900)
+|.|.+||..+. +.....++++.
T Consensus 300 ~~~i~v~D~~t~-------------~~v~~i~~~g~ 322 (337)
T d1pbyb_ 300 LGDLAAYDAETL-------------EKKGQVDLPGN 322 (337)
T ss_dssp SSEEEEEETTTC-------------CEEEEEECGGG
T ss_pred CCCEEEEECCCC-------------CEEEEEECCCC
T ss_conf 992999999987-------------69899988999
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=1.1e-14 Score=99.78 Aligned_cols=257 Identities=11% Similarity=0.047 Sum_probs=171.1
Q ss_pred CCEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEECEEEECCCCEEEEEEECCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 96299995489809999789981888986499224261673599899999648989999778984799982199134312
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 635 (900)
Q Consensus 556 ~~~~i~igs~~g~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 635 (900)
++.+++.|+.||.|..||..+++.+..+..+..... ++..++..++.|+.|+.+..|+..++...............
T Consensus 24 d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~--~v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~- 100 (293)
T d1p22a2 24 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL--CLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLH- 100 (293)
T ss_dssp CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEE--EEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEE-
T ss_pred CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEE--EEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
T ss_conf 699999992899399999999919999926778776--34236300210011101100000246410011111100001-
Q ss_pred EEECCCCEEEEECCCCEEEEEECCCCEEEEE---ECCCCCCCCCCEEECCCCEEEEEECCCCEEEEECCCCCCEEEEEEE
Q ss_conf 6747998899944799099998789969984---1049854347536315989999917991999991798740346853
Q 002615 636 VVDAPRQLIWCGSHDHNLYALDFRNYRCVYK---LPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHE 712 (900)
Q Consensus 636 ~~~~~~~~i~~gs~dg~i~~~d~~~g~~~w~---~~~~~~~~~~~~~~~~~~~l~v~t~~g~i~~~d~~~~~g~~~w~~~ 712 (900)
.....+.+..+..++.+..++..+...... ......... ........++.++.++.+..++..+ ++.+....
T Consensus 101 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~s~d~~i~~~d~~~--~~~~~~~~ 175 (293)
T d1p22a2 101 -LRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN--VVDFDDKYIVSASGDRTIKVWNTST--CEFVRTLN 175 (293)
T ss_dssp -EECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE--EEEEETTEEEEEETTSEEEEEETTT--CCEEEEEE
T ss_pred -CCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC--CCEECCCCCCCCCCCCCEEEECCCC--CCEEEEEC
T ss_conf -111110000013566306861344544421210001135431--1000002201106998604100788--83889971
Q ss_pred CCCCCEEEEEEEECCCEEEEEEECCCEEEEC-CCCCEEEEECCCCCEECCCCCCCCCCCEEEEEEECCEEEEEECCCCCE
Q ss_conf 0785111123430799899995259199997-999777651279961005632334899499994289299996889844
Q 002615 713 LEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNL 791 (900)
Q Consensus 713 ~~~~~~~s~~~~~~~~~i~~g~~~g~i~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~tG~~ 791 (900)
....... .....+..++.+..++.+..|| .+++.+............. ......++.++.||.++.||..++..
T Consensus 176 ~~~~~v~--~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~---~~~~~~l~sg~~dg~i~iwd~~~~~~ 250 (293)
T d1p22a2 176 GHKRGIA--CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI---RFDNKRIVSGAYDGKIKVWDLVAALD 250 (293)
T ss_dssp CCSSCEE--EEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE---ECCSSEEEEEETTSCEEEEEHHHHTS
T ss_pred CCCCCCC--CCCCCCCEEEEECCCCEEEEEECCCCEEEEEECCCCEEEEEC---CCCCEEEEEECCCCEEEEEECCCCCC
T ss_conf 5544532--216898758876589989998665561466521431000001---45410799986799799998888864
Q ss_pred ---------EEEEECCCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEE
Q ss_conf ---------33882499342043223220001344567880999984899399999
Q 002615 792 ---------LWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILR 838 (900)
Q Consensus 792 ---------~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vg~~~G~i~~~d 838 (900)
+..+..+...+... ..++..++.++.||.|++||
T Consensus 251 ~~~~~~~~~~~~~~~H~~~V~~v-------------~~d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 251 PRAPAGTLCLRTLVEHSGRVFRL-------------QFDEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp TTSCTTTTEEEEECCCSSCCCCE-------------EECSSCEEECCSSSEEEEEC
T ss_pred CCCCCCCEEEEEECCCCCCEEEE-------------EECCCEEEEEECCCEEEEEC
T ss_conf 44567754557845889988999-------------97199999992299899959
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.77 E-value=1.1e-14 Score=99.79 Aligned_cols=236 Identities=11% Similarity=0.004 Sum_probs=144.8
Q ss_pred CCEEEEEECCCCEEEEEECCCCCEE--EEEECCCCEEECEEEECCCCEEEEEEECCEEEEEECCCCCEEEEEEC--CCCE
Q ss_conf 9629999548980999978998188--89864992242616735998999996489899997789847999821--9913
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVL--WEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT--CGEV 631 (900)
Q Consensus 556 ~~~~i~igs~~g~i~~~d~~tG~~~--w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~--~~~~ 631 (900)
++..+.+|+.++.|..||..+++.. ..+..+.....+..+++++++++.++.|+.++.||..++........ +...
T Consensus 18 dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~ 97 (371)
T d1k8kc_ 18 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA 97 (371)
T ss_dssp TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSC
T ss_pred CCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 99999999488989999888997899999558899888999979999999997999399986203321100122322110
Q ss_pred EEEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEEC----CCCCCCCCCEEECCCCEEEEEECCCCEEEEECCCCCC--
Q ss_conf 4312674799889994479909999878996998410----4985434753631598999991799199999179874--
Q 002615 632 KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLP----CGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPF-- 705 (900)
Q Consensus 632 ~~~~~~~~~~~~i~~gs~dg~i~~~d~~~g~~~w~~~----~~~~~~~~~~~~~~~~~l~v~t~~g~i~~~d~~~~~g-- 705 (900)
.....+.+++..+++++.++.+..|+.......+... .......+....+++..+..++.+|.+..|+......
T Consensus 98 v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~ 177 (371)
T d1k8kc_ 98 ARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEE 177 (371)
T ss_dssp EEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEECCCCCCC
T ss_conf 00111111121100000257630254420334331110010111222111111111110001347679998401576431
Q ss_pred --------------EEEEEEECCCCCEEEEEEEECCCEEEEEEECCCEEEEC-CCCCEEEEECCC-CCEECCCCCCCCCC
Q ss_conf --------------03468530785111123430799899995259199997-999777651279-96100563233489
Q 002615 706 --------------HTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG-GPIFAGPCTSFALP 769 (900)
Q Consensus 706 --------------~~~w~~~~~~~~~~s~~~~~~~~~i~~g~~~g~i~~~d-~~G~~~w~~~~~-~~~~~~~~~~~~~~ 769 (900)
........+.....+..+.+++..++.++.|+.+..|| .++..+...... .++.+.. ...+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~---fs~d 254 (371)
T d1k8kc_ 178 RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVT---FITE 254 (371)
T ss_dssp CCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEE---EEET
T ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCEEEE---ECCC
T ss_conf 0012211111111011244047667478987512332100001478605886410121000001466520365---4699
Q ss_pred CEEEEEEECCEEEEEECCCCCEEEE
Q ss_conf 9499994289299996889844338
Q 002615 770 SQVLICSRNGSIYSFEQESGNLLWE 794 (900)
Q Consensus 770 ~~i~~gs~dg~i~~~d~~tG~~~w~ 794 (900)
+.+++++.|+.+..+........+.
T Consensus 255 ~~~la~g~d~~~~~~~~~~~~~~~~ 279 (371)
T d1k8kc_ 255 SSLVAAGHDCFPVLFTYDSAAGKLS 279 (371)
T ss_dssp TEEEEEETTSSCEEEEEETTTTEEE
T ss_pred CCEEEEECCCCEEEEEEECCCCEEE
T ss_conf 9799998199267877608986288
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.76 E-value=1.5e-15 Score=105.04 Aligned_cols=283 Identities=11% Similarity=-0.029 Sum_probs=108.5
Q ss_pred CEEEEEECCCCEEECEEEECCCCEEEEEEECCEEEEEECCCCCEEEEEEC-CCCEEEEEEEECCCCEEEEECCCCEEEEE
Q ss_conf 18889864992242616735998999996489899997789847999821-99134312674799889994479909999
Q 002615 578 SVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT-CGEVKCQPVVDAPRQLIWCGSHDHNLYAL 656 (900)
Q Consensus 578 ~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~i~~gs~dg~i~~~ 656 (900)
++......+.....+..+++++.+++.|+.||.|+.||..+|+....+.. +........+.++ +.+++++.|+.+..|
T Consensus 3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~-g~~~~~~~d~~v~~~ 81 (299)
T d1nr0a2 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLFTVSWDDHLKVV 81 (299)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT-SCEEEEETTTEEEEE
T ss_pred CCCEECCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECC-CEEECCCCEEEEEEE
T ss_conf 6136848888782899997999999999089929999999996889983788774899884033-112102310268873
Q ss_pred ECCCCEEEEEEC---CCCCCCCCCEEECCCCEEEEEECCCCEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCEEEEE
Q ss_conf 878996998410---49854347536315989999917991999991798740346853078511112343079989999
Q 002615 657 DFRNYRCVYKLP---CGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICC 733 (900)
Q Consensus 657 d~~~g~~~w~~~---~~~~~~~~~~~~~~~~~l~v~t~~g~i~~~d~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~g 733 (900)
+........... ..........+.++ +.+++++.++.+..++... ......... .....+.+++..++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~~~~~~~~~i~~~~~~~-----~~~~~~~~~-~~~~~~s~~~~~l~~g 154 (299)
T d1nr0a2 82 PAGGSGVDSSKAVANKLSSQPLGLAVSAD-GDIAVAACYKHIAIYSHGK-----LTEVPISYN-SSCVALSNDKQFVAVG 154 (299)
T ss_dssp CSSSSSSCTTSCCEEECSSCEEEEEECTT-SSCEEEEESSEEEEEETTE-----EEEEECSSC-EEEEEECTTSCEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCC-----CCCCCCCCC-CCCCCCCCCCCCCCCC
T ss_conf 16776201110001111344321001122-1111122222221111111-----111011112-3322111111111111
Q ss_pred EECCCEEEEC-CCCCEEE--EECCCCCEECCCCCCCCCCCEEEEEEECCEEEEEECCCCCEEEEEE---CCC-CEECCCC
Q ss_conf 5259199997-9997776--5127996100563233489949999428929999688984433882---499-3420432
Q 002615 734 LVDGHVVALD-SSGSIIW--RCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYS---VGD-PITASAY 806 (900)
Q Consensus 734 ~~~g~i~~~d-~~G~~~w--~~~~~~~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~tG~~~w~~~---~~~-~~~~~~~ 806 (900)
+.++.+..+| .+++... .......+.+.. ....+..+++++.+|.++.|+..++....... .+. .+....
T Consensus 155 ~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~- 231 (299)
T d1nr0a2 155 GQDSKVHVYKLSGASVSEVKTIVHPAEITSVA--FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS- 231 (299)
T ss_dssp ETTSEEEEEEEETTEEEEEEEEECSSCEEEEE--ECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEE-
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
T ss_conf 11111111111111111111111111111111--111111111111111111111111111111111111111111112-
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCE-EECCEEEEEEECC
Q ss_conf 232200013445678809999848993999996058566555554532035653026984224863-6687899943089
Q 002615 807 IDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPV-MIGGRVFVGCRDD 885 (900)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~i~vg~~~G~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~-~~~~~l~vg~~dg 885 (900)
+ .+.+..+++|+.||.|++||.+.+.... ......-....+.... ..++.|+.++.|+
T Consensus 232 ~-----------s~~~~~l~sgs~dg~i~iwd~~~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~ 290 (299)
T d1nr0a2 232 W-----------SPDNVRLATGSLDNSVIVWNMNKPSDHP----------IIIKGAHAMSSVNSVIWLNETTIVSAGQDS 290 (299)
T ss_dssp E-----------CTTSSEEEEEETTSCEEEEETTCTTSCC----------EEETTSSTTSCEEEEEEEETTEEEEEETTS
T ss_pred C-----------CCCCCCEEEECCCCEEEEEECCCCCCCE----------EEEECCCCCCCEEEEEECCCCEEEEEECCC
T ss_conf 4-----------6664513888289979999899997314----------898348988968999977989999992899
Q ss_pred EEEEEEC
Q ss_conf 3999981
Q 002615 886 YIYCIAL 892 (900)
Q Consensus 886 ~l~~ld~ 892 (900)
.+..||+
T Consensus 291 ~i~iWdl 297 (299)
T d1nr0a2 291 NIKFWNV 297 (299)
T ss_dssp CEEEEEC
T ss_pred EEEEEEC
T ss_conf 7999944
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.75 E-value=2.3e-14 Score=97.94 Aligned_cols=184 Identities=8% Similarity=-0.011 Sum_probs=79.1
Q ss_pred CCEEEEEECCCCEEEEEECCCCCEEEEEECC--CCEEECEEEECCCCEEEEEEECCEEEEEECCCCCEEEEEEC----CC
Q ss_conf 9629999548980999978998188898649--92242616735998999996489899997789847999821----99
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWEIKLE--GRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT----CG 629 (900)
Q Consensus 556 ~~~~i~igs~~g~i~~~d~~tG~~~w~~~~~--~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~----~~ 629 (900)
.+.++..++.|+.++.||..+++........ .....+..+.+++..+++|+.++.+..|+...+...+.... ..
T Consensus 62 ~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~ 141 (371)
T d1k8kc_ 62 DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR 141 (371)
T ss_dssp TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCC
T ss_pred CCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf 99999999799939998620332110012232211000111111121100000257630254420334331110010111
Q ss_pred CEEEEEEEECCCCEEEEECCCCEEEEEECCCCE------------------EEEEECCCCCCCCCCEEECCCCEEEEEEC
Q ss_conf 134312674799889994479909999878996------------------99841049854347536315989999917
Q 002615 630 EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR------------------CVYKLPCGGSIFGSPAIDEVHDVLYVAST 691 (900)
Q Consensus 630 ~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~~g~------------------~~w~~~~~~~~~~~~~~~~~~~~l~v~t~ 691 (900)
....+..+.+++..+.+|+.|+.+..|+...+. .......+.....+.++.+++..++.++.
T Consensus 142 ~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~ 221 (371)
T d1k8kc_ 142 STVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH 221 (371)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET
T ss_pred CCCCCCCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCC
T ss_conf 22211111111111000134767999840157643100122111111110112440476674789875123321000014
Q ss_pred CCCEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCEEEEEEECCCEEEE
Q ss_conf 991999991798740346853078511112343079989999525919999
Q 002615 692 SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVAL 742 (900)
Q Consensus 692 ~g~i~~~d~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~g~~~g~i~~~ 742 (900)
++.+..||..+ +..+.....+...+.+..+..+ +.+++++.++.+..+
T Consensus 222 d~~i~iwd~~~--~~~~~~~~~~~~~v~s~~fs~d-~~~la~g~d~~~~~~ 269 (371)
T d1k8kc_ 222 DSTVCLADADK--KMAVATLASETLPLLAVTFITE-SSLVAAGHDCFPVLF 269 (371)
T ss_dssp TTEEEEEEGGG--TTEEEEEECSSCCEEEEEEEET-TEEEEEETTSSCEEE
T ss_pred CCCCEEEEEEC--CCCEEEEECCCCCCEEEEECCC-CCEEEEECCCCEEEE
T ss_conf 78605886410--1210000014665203654699-979999819926787
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.73 E-value=6.2e-15 Score=101.30 Aligned_cols=280 Identities=10% Similarity=0.010 Sum_probs=156.8
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCEEEEEECCCC-EEECEEEECCCCEEEEEE-ECCEEEEEECCCCCEEEEEECCCCE-
Q ss_conf 8962999954898099997899818889864992-242616735998999996-4898999977898479998219913-
Q 002615 555 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR-IECSAAVLADFSQVVVGC-YKGKIYFLDYLTGDIYWTFQTCGEV- 631 (900)
Q Consensus 555 ~~~~~i~igs~~g~i~~~d~~tG~~~w~~~~~~~-~~~~~~~~~~~~~i~vg~-~dg~l~~~d~~tG~~~w~~~~~~~~- 631 (900)
.++.++++++.++.|..||+.+++++.....+.. ......+++|+.++|+.. .++.|+.||..+++..+.+......
T Consensus 6 ~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~ 85 (346)
T d1jmxb_ 6 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG 85 (346)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT
T ss_pred CCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCC
T ss_conf 99969999869997999999999899999948999704599978989999997899939999675671312310365434
Q ss_pred -----EEEEEEECCCCEEEEECC------------CCEEEEEECCCCEEEEEECCC--CCCCCCCEEECCCCEEEEEECC
Q ss_conf -----431267479988999447------------990999987899699841049--8543475363159899999179
Q 002615 632 -----KCQPVVDAPRQLIWCGSH------------DHNLYALDFRNYRCVYKLPCG--GSIFGSPAIDEVHDVLYVASTS 692 (900)
Q Consensus 632 -----~~~~~~~~~~~~i~~gs~------------dg~i~~~d~~~g~~~w~~~~~--~~~~~~~~~~~~~~~l~v~t~~ 692 (900)
.....+.+++..+|++.. ++.+..++..+++........ ...... .....++.+++.+
T Consensus 86 ~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-- 162 (346)
T d1jmxb_ 86 EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYL-MRAADDGSLYVAG-- 162 (346)
T ss_dssp EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCC-EEECTTSCEEEES--
T ss_pred CCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCEEEEEEEEEECCCCEEE-EEECCCCEEEEEC--
T ss_conf 5477417999905888899970577521565146762489985256326568873102474399-9952787899847--
Q ss_pred CCEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCEEE--------------------------EEEECCCEEEEC-CC
Q ss_conf 919999917987403468530785111123430799899--------------------------995259199997-99
Q 002615 693 GRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVI--------------------------CCLVDGHVVALD-SS 745 (900)
Q Consensus 693 g~i~~~d~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~--------------------------~g~~~g~i~~~d-~~ 745 (900)
+.+..++..+ ++.......+.... .....+++..++ .+.....+..++ .+
T Consensus 163 ~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (346)
T d1jmxb_ 163 PDIYKMDVKT--GKYTVALPLRNWNR-KGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT 239 (346)
T ss_dssp SSEEEECTTT--CCEEEEECSTTCCC-TTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTT
T ss_pred CCCEEEECCC--CCEEEEEECCCCCC-CEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCEEEEECCCCCEEEEEECCC
T ss_conf 9626998069--97899996489866-23771255289998649981676512311126732575404783499997778
Q ss_pred CCEEEEECC--CCCEECCCCCCCCCCCEEEEEEECCEEEEEECCCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCE
Q ss_conf 977765127--996100563233489949999428929999688984433882499342043223220001344567880
Q 002615 746 GSIIWRCRT--GGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDR 823 (900)
Q Consensus 746 G~~~w~~~~--~~~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (900)
+........ ...+... .....+..++... ++.++.||..+++.++....+..+....+.. ++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~------------DG~ 304 (346)
T d1jmxb_ 240 GKTHTQEFADLTELYFTG--LRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDK------------KGD 304 (346)
T ss_dssp CCEEEEEEEECSSCEEEE--EECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECS------------SSS
T ss_pred CCEEEEEEECCCCEEEEE--EEECCCCEEEEEC-CCEEEEEECCCCCEEEEECCCCCEEEEEECC------------CCC
T ss_conf 836878763156606888--9717997899942-9838999899993999974999778999968------------999
Q ss_pred EEEEECCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 999984899399999605856655555453203565302698422
Q 002615 824 LVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIF 868 (900)
Q Consensus 824 ~i~vg~~~G~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 868 (900)
.+++++.+|.|.+||.+++ +.....++++...
T Consensus 305 ~l~v~~~d~~v~v~D~~t~-------------~~i~~i~~p~g~~ 336 (346)
T d1jmxb_ 305 KLYLGGTFNDLAVFNPDTL-------------EKVKNIKLPGGDM 336 (346)
T ss_dssp CEEEESBSSEEEEEETTTT-------------EEEEEEECSSSCC
T ss_pred EEEEEECCCCEEEEECCCC-------------CEEEEEECCCCCC
T ss_conf 9999948992999999658-------------7979998899985
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.73 E-value=3.2e-13 Score=91.16 Aligned_cols=323 Identities=12% Similarity=0.046 Sum_probs=175.6
Q ss_pred EEEEECCCCEEEEEECCCCCEEEEEECCCCEEECEEEECCCCEEEEEEECCEEEEEECCCCCEEEEE--ECCC---CEEE
Q ss_conf 9999548980999978998188898649922426167359989999964898999977898479998--2199---1343
Q 002615 559 YLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTF--QTCG---EVKC 633 (900)
Q Consensus 559 ~i~igs~~g~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~--~~~~---~~~~ 633 (900)
.+...+.+|.|..||..|++++..+..+..+ ....+++|+.++++++.|+.+..||..+++..... .... ....
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~-~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~ 112 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES 112 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECCSSE-EEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred EEEEECCCCEEEEEECCCCCEEEEEECCCCE-EEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCEEE
T ss_conf 9999759997999999999599999689980-389998999999999589988999756886048999867888764588
Q ss_pred EEEEECCCCEEEEEC-CCCEEEEEECCCCEEEEEECCCCCCCCCCEEECCCCE-EEEEECCCCEEEEECCCCCCEEEEE-
Q ss_conf 126747998899944-7990999987899699841049854347536315989-9999179919999917987403468-
Q 002615 634 QPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDV-LYVASTSGRLTAISVKALPFHTLWL- 710 (900)
Q Consensus 634 ~~~~~~~~~~i~~gs-~dg~i~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~-l~v~t~~g~i~~~d~~~~~g~~~w~- 710 (900)
++.+.+++..+++++ .++.+..+|..+++++..............+...+.. ..+.+.++....+.... ++...+.
T Consensus 113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~-~~~i~~~~ 191 (426)
T d1hzua2 113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE-TGKVLLVN 191 (426)
T ss_dssp CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT-TTEEEEEE
T ss_pred EEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEECCC-CCEEEEEE
T ss_conf 50026889879996358976999857764125786226777364364278850389987878788885278-97699999
Q ss_pred ----------EECCCCCEEEEEEEECCCEEEEEEEC-CCEEEEC-CCCCEEEEECCCCCEECCCCC--CCCCCCEEEEEE
Q ss_conf ----------53078511112343079989999525-9199997-999777651279961005632--334899499994
Q 002615 711 ----------HELEVPAFASLCITSANRHVICCLVD-GHVVALD-SSGSIIWRCRTGGPIFAGPCT--SFALPSQVLICS 776 (900)
Q Consensus 711 ----------~~~~~~~~~s~~~~~~~~~i~~g~~~-g~i~~~d-~~G~~~w~~~~~~~~~~~~~~--~~~~~~~i~~gs 776 (900)
............+..++.+++++..+ ..+..++ .+++..-....+......... .....+.++...
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (426)
T d1hzua2 192 YKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTS 271 (426)
T ss_dssp CSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEE
T ss_pred ECCCCCEEEEEECCCCCCEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEC
T ss_conf 24665204577566775376137788867886420110000000255627887505874443420110069877457741
Q ss_pred --ECCEEEEEECCCC-------CEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCEEEEEE-------CCCCCEEEEEEE
Q ss_conf --2892999968898-------443388249934204322322000134456788099998-------489939999960
Q 002615 777 --RNGSIYSFEQESG-------NLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCIC-------TSSGSIHILRVN 840 (900)
Q Consensus 777 --~dg~i~~~d~~tG-------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vg-------~~~G~i~~~d~~ 840 (900)
.++.+..++.... +....+..+........ ..+++..+++. ..++.|.+||.+
T Consensus 272 ~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~-----------~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~ 340 (426)
T d1hzua2 272 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIK-----------THPKSSHLYVDTTFNPDARISQSVAVFDLK 340 (426)
T ss_dssp CTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEE-----------CCTTCSEEEECCTTCSSHHHHTCEEEEETT
T ss_pred CCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEE-----------CCCCCCEEEEEECCCCCCCCCCEEEEEECC
T ss_conf 578965988522566520330258689866887636787-----------489986188850679880228879999898
Q ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEE--ECCEEEEEE-----ECCEEEEEECCCCCCC
Q ss_conf 585665555545320356530269842248636--687899943-----0893999981044333
Q 002615 841 LDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGC-----RDDYIYCIALETQHLE 898 (900)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~--~~~~l~vg~-----~dg~l~~ld~~tg~~~ 898 (900)
++.......... + +.........+.++.+ ++.++|+.+ .++.+..||.+|+++.
T Consensus 341 t~~~~~~~~~~~---~-~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~ 401 (426)
T d1hzua2 341 NLDAKYQVLPIA---E-WADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 401 (426)
T ss_dssp CTTSCCEEECHH---H-HHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEE
T ss_pred CCCCCEEEECCC---H-HCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCCEEE
T ss_conf 787670895021---1-025677885189879999999999997248888982999999987389
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.68 E-value=1.6e-12 Score=86.95 Aligned_cols=240 Identities=9% Similarity=0.050 Sum_probs=111.8
Q ss_pred CEEEEEECCC-CEEEEEECCCCCE--EEEEECC-CCEEECEEEEC--CCCEEEEEEECCEEEEEECCCCCEEEE------
Q ss_conf 6299995489-8099997899818--8898649-92242616735--998999996489899997789847999------
Q 002615 557 DIYLFVGSHS-HKFICADAKRSSV--LWEIKLE-GRIECSAAVLA--DFSQVVVGCYKGKIYFLDYLTGDIYWT------ 624 (900)
Q Consensus 557 ~~~i~igs~~-g~i~~~d~~tG~~--~w~~~~~-~~~~~~~~~~~--~~~~i~vg~~dg~l~~~d~~tG~~~w~------ 624 (900)
+..+.+++.+ ..++.+|....+. ...+..+ .....+..+++ ++..++.|+.||.|..||..+++....
T Consensus 29 ~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~ 108 (325)
T d1pgua1 29 TNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVK 108 (325)
T ss_dssp TTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEE
T ss_pred CCEEEEEECCCEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCC
T ss_conf 79999996998799997688887650289907899988999981179997999994899779854058862156510025
Q ss_pred --EECCCCEEEEEEEECCCCEEEEEC--CCCEEEEEECCCCEEEEEECCCCCCCCCCEEECCCC-EEEEEECCCCEEEEE
Q ss_conf --821991343126747998899944--799099998789969984104985434753631598-999991799199999
Q 002615 625 --FQTCGEVKCQPVVDAPRQLIWCGS--HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHD-VLYVASTSGRLTAIS 699 (900)
Q Consensus 625 --~~~~~~~~~~~~~~~~~~~i~~gs--~dg~i~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~-~l~v~t~~g~i~~~d 699 (900)
+...........+..++..+.+++ .++.+..++..+++.+..+..+.....+..+.+.+. .+..++.++.+..|+
T Consensus 109 ~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d 188 (325)
T d1pgua1 109 SEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQ 188 (325)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEE
T ss_pred CCCCCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
T ss_conf 41136567377999899988220100124404788850233110012001234321111234320688862111221111
Q ss_pred CCCCCCEEEEEEECC---CCCEEEEEEEEC-CCEEEEEEECCCEEEEC-CCCCEEEEECCCCCEECCCCC--CCCCCCEE
Q ss_conf 179874034685307---851111234307-99899995259199997-999777651279961005632--33489949
Q 002615 700 VKALPFHTLWLHELE---VPAFASLCITSA-NRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCT--SFALPSQV 772 (900)
Q Consensus 700 ~~~~~g~~~w~~~~~---~~~~~s~~~~~~-~~~i~~g~~~g~i~~~d-~~G~~~w~~~~~~~~~~~~~~--~~~~~~~i 772 (900)
..+ ++........ .....+..+.++ +..++.++.++.+.+|| .+++.+..+............ ....+..+
T Consensus 189 ~~~--~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l 266 (325)
T d1pgua1 189 GPP--FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKF 266 (325)
T ss_dssp TTT--BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEE
T ss_pred CCC--CCCCEECCCCCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCEE
T ss_conf 221--100000000157777527763034531000011233210134300122211111111111110000003689999
Q ss_pred EEEEECCEEEEEECCCCCEEEEEECC
Q ss_conf 99942892999968898443388249
Q 002615 773 LICSRNGSIYSFEQESGNLLWEYSVG 798 (900)
Q Consensus 773 ~~gs~dg~i~~~d~~tG~~~w~~~~~ 798 (900)
+.++.|+.++.||..+++.+..+..+
T Consensus 267 ~s~s~D~~i~iwd~~~~~~~~~~~~~ 292 (325)
T d1pgua1 267 ATVGADATIRVWDVTTSKCVQKWTLD 292 (325)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECC
T ss_pred EEEECCCEEEEEECCCCCEEEEEEEC
T ss_conf 99958993999999999788999954
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.68 E-value=1.5e-12 Score=87.16 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=11.8
Q ss_pred EEEEEEECCEEEEEECCCCCEEEEEE
Q ss_conf 49999428929999688984433882
Q 002615 771 QVLICSRNGSIYSFEQESGNLLWEYS 796 (900)
Q Consensus 771 ~i~~gs~dg~i~~~d~~tG~~~w~~~ 796 (900)
.+..++.||.|++||..+++.+.++.
T Consensus 220 ~l~s~~~d~~i~iwd~~~~~~~~~l~ 245 (325)
T d1pgua1 220 FVITVGSDRKISCFDGKSGEFLKYIE 245 (325)
T ss_dssp EEEEEETTCCEEEEETTTCCEEEECC
T ss_pred ECCCCCCCCCEEEEEECCCCCCCCCC
T ss_conf 00011233210134300122211111
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.68 E-value=5e-14 Score=95.91 Aligned_cols=233 Identities=12% Similarity=0.031 Sum_probs=96.1
Q ss_pred CCEEEEE-ECCCCEEEEEECCCCCEEEEEECCCCE-----EECEEEECCCCEEEEEEE------------CCEEEEEECC
Q ss_conf 9629999-548980999978998188898649922-----426167359989999964------------8989999778
Q 002615 556 SDIYLFV-GSHSHKFICADAKRSSVLWEIKLEGRI-----ECSAAVLADFSQVVVGCY------------KGKIYFLDYL 617 (900)
Q Consensus 556 ~~~~i~i-gs~~g~i~~~d~~tG~~~w~~~~~~~~-----~~~~~~~~~~~~i~vg~~------------dg~l~~~d~~ 617 (900)
++.++|+ ++.++.|+.||..+|+.++........ .....+++++..++++.. +..+..+|..
T Consensus 44 Dg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~ 123 (337)
T d1pbyb_ 44 GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123 (337)
T ss_dssp TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT
T ss_pred CCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCEEECCCC
T ss_conf 98999999789994999999999298887247773125402548986877579995047762034203455521203566
Q ss_pred CCCEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCEE---------ECCCCEEEE
Q ss_conf 98479998219913431267479988999447990999987899699841049854347536---------315989999
Q 002615 618 TGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAI---------DEVHDVLYV 688 (900)
Q Consensus 618 tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~~g~~~w~~~~~~~~~~~~~~---------~~~~~~l~v 688 (900)
+++..+.+.....+. ...+.+++..+++++. ....+|..+++..+.............. ....+....
T Consensus 124 ~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (337)
T d1pbyb_ 124 TLSRRKAFEAPRQIT-MLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMAT 200 (337)
T ss_dssp TTEEEEEEECCSSCC-CEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEE
T ss_pred CCEEEEECCCCCCCE-EEEECCCCCEEEEECC--CCCEEEEECCCEEEEEECCCCCCCCEECCCCCEEECCCCCCCEEEE
T ss_conf 775988414568721-8998688888999717--7505663037278886147754331135776314014665312466
Q ss_pred ----E----------ECCCCEEEEECCCCCCEEEEEEEC-CCCCEEEEEEEECCCEEEEEEECCCEEEEC-CCCCEEEEE
Q ss_conf ----9----------179919999917987403468530-785111123430799899995259199997-999777651
Q 002615 689 ----A----------STSGRLTAISVKALPFHTLWLHEL-EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRC 752 (900)
Q Consensus 689 ----~----------t~~g~i~~~d~~~~~g~~~w~~~~-~~~~~~s~~~~~~~~~i~~g~~~g~i~~~d-~~G~~~w~~ 752 (900)
. +..+.+..++..+ +........ ............+...++.. ++.+.+|| .+++.+++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~ 276 (337)
T d1pbyb_ 201 PFYTARKDIDPADPTAYRTGLLTMDLET--GEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV 276 (337)
T ss_dssp EEEEEBTTSCTTSGGGEEEEEEEEETTT--CCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE
T ss_pred EEEEEEECCCEEEECCCCCCEEEEECCC--CCEEEEEECCCCCCEEEEEECCCCEEEEEC--CCCEEEEECCCCCEEEEE
T ss_conf 3244410366045403676179998688--858889832887505888742661399973--552899989889699997
Q ss_pred CCCCCEECCCCCCCC-CCCEEEEEEECCEEEEEECCCCCEEEEEECC
Q ss_conf 279961005632334-8994999942892999968898443388249
Q 002615 753 RTGGPIFAGPCTSFA-LPSQVLICSRNGSIYSFEQESGNLLWEYSVG 798 (900)
Q Consensus 753 ~~~~~~~~~~~~~~~-~~~~i~~gs~dg~i~~~d~~tG~~~w~~~~~ 798 (900)
..+..+.+.. .. .+..+|+++.+|.|.+||.++++.+-+++.+
T Consensus 277 ~~~~~~~~~~---~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~ 320 (337)
T d1pbyb_ 277 PLPHSYYSVN---VSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp ECSSCCCEEE---ECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred CCCCCEEEEE---ECCCCCEEEEEECCCCEEEEECCCCCEEEEEECC
T ss_conf 4899889999---9789999999949992999999987698999889
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.67 E-value=4.7e-14 Score=96.09 Aligned_cols=180 Identities=8% Similarity=-0.048 Sum_probs=105.7
Q ss_pred CEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEECEEEECCCCEEEEEEECC--EEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 62999954898099997899818889864992242616735998999996489--8999977898479998219913431
Q 002615 557 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKG--KIYFLDYLTGDIYWTFQTCGEVKCQ 634 (900)
Q Consensus 557 ~~~i~igs~~g~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg--~l~~~d~~tG~~~w~~~~~~~~~~~ 634 (900)
+..+..+ ..|.++.+|..+|+.+. .....++ .++.++++++.+++++.+. .++.||..+|+..-.. .+......
T Consensus 15 G~~~a~~-~~g~v~v~d~~~~~~~~-~~~~~~v-~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~-~~~~~v~~ 90 (360)
T d1k32a3 15 GDLIAFV-SRGQAFIQDVSGTYVLK-VPEPLRI-RYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFA 90 (360)
T ss_dssp GGCEEEE-ETTEEEEECTTSSBEEE-CSCCSCE-EEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECC-CCCCSEEE
T ss_pred CCEEEEE-ECCEEEEEECCCCCEEE-CCCCCCE-EEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEE-CCCCEEEE
T ss_conf 9999999-89969999899994899-1699988-8899989999999999289989999989999488750-89712774
Q ss_pred EEEECCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCEEECCCCEEEEEE----------CCCCEEEEECCCCC
Q ss_conf 26747998899944799099998789969984104985434753631598999991----------79919999917987
Q 002615 635 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAS----------TSGRLTAISVKALP 704 (900)
Q Consensus 635 ~~~~~~~~~i~~gs~dg~i~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t----------~~g~i~~~d~~~~~ 704 (900)
..+.+++..+++++.++.++.|+..+++..............+.+.+++..++++. .++.++.++..+
T Consensus 91 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~-- 168 (360)
T d1k32a3 91 MGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG-- 168 (360)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT--
T ss_pred EEECCCCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCCEEEEEEECCCCCCCEEECCCCCEEEECCCC--
T ss_conf 121145432100011111000001222100000013552023012132256652123312110002565426630455--
Q ss_pred CEEEEEEECCCCCEEEEEEEECCCEEEEEEECCCEEEEC
Q ss_conf 403468530785111123430799899995259199997
Q 002615 705 FHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD 743 (900)
Q Consensus 705 g~~~w~~~~~~~~~~s~~~~~~~~~i~~g~~~g~i~~~d 743 (900)
++......... ........+++..++.++.++.+..++
T Consensus 169 ~~~~~~~~~~~-~~~~~~~spdg~~l~~~s~~~~~~~~d 206 (360)
T d1k32a3 169 RKIFAATTENS-HDYAPAFDADSKNLYYLSYRSLDPSPD 206 (360)
T ss_dssp TEEEECSCSSS-BEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred CCEEEECCCCC-CCCCCCCCCCCCEEEEEECCCCEECCC
T ss_conf 71353035432-211001257799999995998557533
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.67 E-value=1.6e-12 Score=86.94 Aligned_cols=241 Identities=14% Similarity=0.153 Sum_probs=148.8
Q ss_pred EECCCEEEEEE-CCCCEEEEEECCCCCEEEEEECCCCEEECEEEECCCCEEEEEE-ECCEEEEEECCCCCEEEEEECCCC
Q ss_conf 51896299995-4898099997899818889864992242616735998999996-489899997789847999821991
Q 002615 553 LKDSDIYLFVG-SHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGC-YKGKIYFLDYLTGDIYWTFQTCGE 630 (900)
Q Consensus 553 ~~~~~~~i~ig-s~~g~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~-~dg~l~~~d~~tG~~~w~~~~~~~ 630 (900)
+..++.++|++ +.++.|..||..+++.+..+..+.... ...+..++..+++.+ .++.++.++..+++..........
T Consensus 39 ~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (301)
T d1l0qa2 39 ISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ-GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS 117 (301)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred EECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCC-CCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCC
T ss_conf 928989999997899989999999894103200024643-1100011111111111110011001243024320244444
Q ss_pred EEEEEEEECCCCEEEE-ECCCCEEEEEECCCCEEEEEECCCCCCCCCCEEECCCCEEEEEECCC-CEEEEECCCCCCEEE
Q ss_conf 3431267479988999-44799099998789969984104985434753631598999991799-199999179874034
Q 002615 631 VKCQPVVDAPRQLIWC-GSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSG-RLTAISVKALPFHTL 708 (900)
Q Consensus 631 ~~~~~~~~~~~~~i~~-gs~dg~i~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g-~i~~~d~~~~~g~~~ 708 (900)
... ..+.+++..+++ +..++.+..++..+++............ .....+++..+++++.+. .+..++... .+..
T Consensus 118 ~~~-~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 193 (301)
T d1l0qa2 118 PLG-LALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPK-GIAVTPDGTKVYVANFDSMSISVIDTVT--NSVI 193 (301)
T ss_dssp EEE-EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEE-EEEECTTSSEEEEEETTTTEEEEEETTT--TEEE
T ss_pred CEE-EEEECCCCEEEEEECCCCCEEEEECCCCCEEEECCCCCCCE-EEEEECCCCCEEEECCCCCCCCCCCCCC--EEEE
T ss_conf 237-87605897155420111100110001463035315678842-8886046540131012111111111110--0011
Q ss_pred EEEECCCCCEEEEEEEECCCEEEEEEEC---CCEEEEC-CCCCEEEEECCCCCEECCCCCCCCCC-CEEEEE-EECCEEE
Q ss_conf 6853078511112343079989999525---9199997-99977765127996100563233489-949999-4289299
Q 002615 709 WLHELEVPAFASLCITSANRHVICCLVD---GHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALP-SQVLIC-SRNGSIY 782 (900)
Q Consensus 709 w~~~~~~~~~~s~~~~~~~~~i~~g~~~---g~i~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~-~~i~~g-s~dg~i~ 782 (900)
......... ....+..++..++++..+ +.+..+| .+++.+.++..+....... ...+ ..+|++ ..++.|.
T Consensus 194 ~~~~~~~~~-~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va---~spdg~~l~va~~~~~~i~ 269 (301)
T d1l0qa2 194 DTVKVEAAP-SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIA---VTPDGKKVYVALSFCNTVS 269 (301)
T ss_dssp EEEECSSEE-EEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEE---ECTTSSEEEEEETTTTEEE
T ss_pred ECCCCCCCC-CEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEE---EECCCCEEEEEECCCCEEE
T ss_conf 101335775-031101111011110021000023236569981999984899877999---9189899999989999699
Q ss_pred EEECCCCCEEEEEECCCCEE
Q ss_conf 99688984433882499342
Q 002615 783 SFEQESGNLLWEYSVGDPIT 802 (900)
Q Consensus 783 ~~d~~tG~~~w~~~~~~~~~ 802 (900)
+||.++|+++-++.++....
T Consensus 270 v~D~~t~~~~~~~~vg~~P~ 289 (301)
T d1l0qa2 270 VIDTATNTITATMAVGKNPY 289 (301)
T ss_dssp EEETTTTEEEEEEECSSSEE
T ss_pred EEECCCCEEEEEEECCCCCC
T ss_conf 99999995999996899974
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.67 E-value=6.2e-13 Score=89.43 Aligned_cols=264 Identities=6% Similarity=-0.007 Sum_probs=159.1
Q ss_pred ECCCEEEEEECCCCEEEEEECCCCCEEEEEE-CCCCEEECEEEECCCCEEEEEEECCEEEEEECCCCCEE----EEEECC
Q ss_conf 1896299995489809999789981888986-49922426167359989999964898999977898479----998219
Q 002615 554 KDSDIYLFVGSHSHKFICADAKRSSVLWEIK-LEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIY----WTFQTC 628 (900)
Q Consensus 554 ~~~~~~i~igs~~g~i~~~d~~tG~~~w~~~-~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~----w~~~~~ 628 (900)
..++.+++.|+.|+.|+.||..+|+....+. .+.....+..+.+++ .+++++.|+.+..|+....... ......
T Consensus 21 s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~ 99 (299)
T d1nr0a2 21 SADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLS 99 (299)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECS
T ss_pred CCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCC-EEECCCCEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 79999999990899299999999968899837887748998840331-12102310268873167762011100011113
Q ss_pred CCEEEEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCEEECCCCEEEEEECCCCEEEEECCCCCCEEE
Q ss_conf 91343126747998899944799099998789969984104985434753631598999991799199999179874034
Q 002615 629 GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTL 708 (900)
Q Consensus 629 ~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~i~~~d~~~~~g~~~ 708 (900)
..+ ....+.+++..+..+ .++.+..|+... .. ...... ......+.+++..+++++.+|.+..++.++ ++..
T Consensus 100 ~~~-~~~~~s~~g~~~~~~-~~~~i~~~~~~~--~~-~~~~~~-~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~--~~~~ 171 (299)
T d1nr0a2 100 SQP-LGLAVSADGDIAVAA-CYKHIAIYSHGK--LT-EVPISY-NSSCVALSNDKQFVAVGGQDSKVHVYKLSG--ASVS 171 (299)
T ss_dssp SCE-EEEEECTTSSCEEEE-ESSEEEEEETTE--EE-EEECSS-CEEEEEECTTSCEEEEEETTSEEEEEEEET--TEEE
T ss_pred CCC-CCCCCCCCCCCCCCC-CCCCCCCCCCCC--CC-CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCC
T ss_conf 443-210011221111122-222221111111--11-101111-233221111111111111111111111111--1111
Q ss_pred EEE-ECCCCCEEEEEEEECCCEEEEEEECCCEEEEC-CCCCEEEEECC----CCCEECCCCCCCCCCCEEEEEEECCEEE
Q ss_conf 685-30785111123430799899995259199997-99977765127----9961005632334899499994289299
Q 002615 709 WLH-ELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT----GGPIFAGPCTSFALPSQVLICSRNGSIY 782 (900)
Q Consensus 709 w~~-~~~~~~~~s~~~~~~~~~i~~g~~~g~i~~~d-~~G~~~w~~~~----~~~~~~~~~~~~~~~~~i~~gs~dg~i~ 782 (900)
... ..+.....+..+.+++..+++++.++.+..|| .++........ ..++.+.. ....+..++.++.||.++
T Consensus 172 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~s~~~~~l~sgs~dg~i~ 249 (299)
T d1nr0a2 172 EVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS--WSPDNVRLATGSLDNSVI 249 (299)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEE--ECTTSSEEEEEETTSCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCEEEECCCCEEE
T ss_conf 111111111111111111111111111111111111111111111111111111111112--466645138882899799
Q ss_pred EEECCCCCEEEEEECC---CCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEE
Q ss_conf 9968898443388249---934204322322000134456788099998489939999960
Q 002615 783 SFEQESGNLLWEYSVG---DPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 840 (900)
Q Consensus 783 ~~d~~tG~~~w~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~vg~~~G~i~~~d~~ 840 (900)
.||..++......... .......+..+ +..++.++.||.|++||..
T Consensus 250 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~------------~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 250 VWNMNKPSDHPIIIKGAHAMSSVNSVIWLN------------ETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp EEETTCTTSCCEEETTSSTTSCEEEEEEEE------------TTEEEEEETTSCEEEEECC
T ss_pred EEECCCCCCCEEEEECCCCCCCEEEEEECC------------CCEEEEEECCCEEEEEECC
T ss_conf 998999973148983489889689999779------------8999999289979999444
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.62 E-value=8e-13 Score=88.78 Aligned_cols=275 Identities=10% Similarity=0.051 Sum_probs=138.8
Q ss_pred EEEECCCCEEEEEEECCEEEEEECCCCCEEEEEECCC-CEEEEEEEECCCCEEEEE-CCCCEEEEEECCCCEEEEEECCC
Q ss_conf 1673599899999648989999778984799982199-134312674799889994-47990999987899699841049
Q 002615 593 AAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG-EVKCQPVVDAPRQLIWCG-SHDHNLYALDFRNYRCVYKLPCG 670 (900)
Q Consensus 593 ~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~~~~~i~~g-s~dg~i~~~d~~~g~~~w~~~~~ 670 (900)
+.++.++.++++++.++.|..||+++++++.++..+. .......+.+++..+|+. ..++.++.||..+++.+......
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred CCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCC
T ss_conf 55889996999986999799999999989999994899970459997898999999789993999967567131231036
Q ss_pred CCC------CCCCEEECCCCEEEEEEC------------CCCEEEEECCCCCCEEEEEEECC-CCCEEEEEEEECCCEEE
Q ss_conf 854------347536315989999917------------99199999179874034685307-85111123430799899
Q 002615 671 GSI------FGSPAIDEVHDVLYVAST------------SGRLTAISVKALPFHTLWLHELE-VPAFASLCITSANRHVI 731 (900)
Q Consensus 671 ~~~------~~~~~~~~~~~~l~v~t~------------~g~i~~~d~~~~~g~~~w~~~~~-~~~~~s~~~~~~~~~i~ 731 (900)
... .....+.+++..+|++.. ++.+..++..+ ++........ .+..........++.++
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD--GLEAKPVRTFPMPRQVYLMRAADDGSLY 159 (346)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG--GGGBCCSEEEECCSSCCCEEECTTSCEE
T ss_pred CCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCC--CEEEEEEEEEECCCCEEEEEECCCCEEE
T ss_conf 54345477417999905888899970577521565146762489985256--3265688731024743999952787899
Q ss_pred EEEECCCEEEEC-CCCCEEEEECCCCCE---ECCCC-----CCCCCCCEEE----------------EEEECCEEEEEEC
Q ss_conf 995259199997-999777651279961---00563-----2334899499----------------9942892999968
Q 002615 732 CCLVDGHVVALD-SSGSIIWRCRTGGPI---FAGPC-----TSFALPSQVL----------------ICSRNGSIYSFEQ 786 (900)
Q Consensus 732 ~g~~~g~i~~~d-~~G~~~w~~~~~~~~---~~~~~-----~~~~~~~~i~----------------~gs~dg~i~~~d~ 786 (900)
+. ++.+..++ .+++.+......... ...+. ......+.+. ....++.+..++.
T Consensus 160 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (346)
T d1jmxb_ 160 VA--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 237 (346)
T ss_dssp EE--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred EE--CCCCEEEECCCCCEEEEEECCCCCCCEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCEEEEECCCCCEEEEEEC
T ss_conf 84--7962699806997899996489866237712552899986499816765123111267325754047834999977
Q ss_pred CCCCEEEEEECCC--CEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 8984433882499--34204322322000134456788099998489939999960585665555545320356530269
Q 002615 787 ESGNLLWEYSVGD--PITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQ 864 (900)
Q Consensus 787 ~tG~~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~vg~~~G~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~ 864 (900)
.++........+. ......... .+..++... .+.+.+||..++ +........
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~-~~~v~v~d~~~~-------------~~~~~~~~~ 291 (346)
T d1jmxb_ 238 KTGKTHTQEFADLTELYFTGLRSP------------KDPNQIYGV-LNRLAKYDLKQR-------------KLIKAANLD 291 (346)
T ss_dssp TTCCEEEEEEEECSSCEEEEEECS------------SCTTEEEEE-ESEEEEEETTTT-------------EEEEEEECS
T ss_pred CCCCEEEEEEECCCCEEEEEEEEC------------CCCEEEEEC-CCEEEEEECCCC-------------CEEEEECCC
T ss_conf 788368787631566068889717------------997899942-983899989999-------------399997499
Q ss_pred CCCCCCCEE--ECCEEEEEEECCEEEEEECCCCCCC
Q ss_conf 842248636--6878999430893999981044333
Q 002615 865 GDIFSSPVM--IGGRVFVGCRDDYIYCIALETQHLE 898 (900)
Q Consensus 865 ~~~~ss~~~--~~~~l~vg~~dg~l~~ld~~tg~~~ 898 (900)
..+ ....+ ++.+||+++.++.+.+||..+++..
T Consensus 292 ~~~-~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i 326 (346)
T d1jmxb_ 292 HTY-YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 326 (346)
T ss_dssp SCC-CEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred CCE-EEEEECCCCCEEEEEECCCCEEEEECCCCCEE
T ss_conf 977-89999689999999948992999999658797
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.62 E-value=5e-12 Score=84.07 Aligned_cols=229 Identities=10% Similarity=0.030 Sum_probs=141.1
Q ss_pred EEEEECCCCEEEEEECCCCCEEEEEECCCCEEECEEEECCCCEEEEEEECCEEEEEECCCCCE--EEEEECCC---CEEE
Q ss_conf 999954898099997899818889864992242616735998999996489899997789847--99982199---1343
Q 002615 559 YLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDI--YWTFQTCG---EVKC 633 (900)
Q Consensus 559 ~i~igs~~g~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~--~w~~~~~~---~~~~ 633 (900)
.+...+.+|.+..||..+++++-.+..+..+ ....+++|+.++|+++.||.+..||..+++. .-...... .+..
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~-~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~ 112 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAV-HISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET 112 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECSSCE-EEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred EEEEECCCCEEEEEECCCCCEEEEEECCCCE-EEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCEEE
T ss_conf 9999769997999989998399997379971-379988999999998289997899810898128899844889877698
Q ss_pred EEEEECCCCEEEE-ECCCCEEEEEECCCCEEEEEECCCCCCCC-----------CCEEECCCCEEEE-EECCCCEEEEEC
Q ss_conf 1267479988999-44799099998789969984104985434-----------7536315989999-917991999991
Q 002615 634 QPVVDAPRQLIWC-GSHDHNLYALDFRNYRCVYKLPCGGSIFG-----------SPAIDEVHDVLYV-ASTSGRLTAISV 700 (900)
Q Consensus 634 ~~~~~~~~~~i~~-gs~dg~i~~~d~~~g~~~w~~~~~~~~~~-----------~~~~~~~~~~l~v-~t~~g~i~~~d~ 700 (900)
++.+.+++..+++ +..++.+..||..+++++........... ..+...++..+++ ....+.+..++.
T Consensus 113 s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~ 192 (432)
T d1qksa2 113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY 192 (432)
T ss_dssp CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred ECCCCCCCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEC
T ss_conf 43218888889998178982799907655422540247764352201688850589987899989999816882999984
Q ss_pred CCCCCEEEEEEECCCCCEEEEEEEECCCEEEEEEEC-CCEEEEC-CCCCEEEEECCCCCEECCC---CCCCCCCCEEEEE
Q ss_conf 798740346853078511112343079989999525-9199997-9997776512799610056---3233489949999
Q 002615 701 KALPFHTLWLHELEVPAFASLCITSANRHVICCLVD-GHVVALD-SSGSIIWRCRTGGPIFAGP---CTSFALPSQVLIC 775 (900)
Q Consensus 701 ~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~g~~~-g~i~~~d-~~G~~~w~~~~~~~~~~~~---~~~~~~~~~i~~g 775 (900)
.+.....++....+... ....+.+++..+++++.+ +.+..++ .+++..+....+....... .......+.++..
T Consensus 193 ~~~~~~~~~~i~~g~~~-~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~ 271 (432)
T d1qksa2 193 TDLNNLKTTEISAERFL-HDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWAT 271 (432)
T ss_dssp TCSSEEEEEEEECCSSE-EEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEE
T ss_pred CCCCCCEEEEECCCCCC-CCCEECCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCEECCCCCCEECC
T ss_conf 37875227998336754-26538898879999516663677761445268887214862245676641014898831021
Q ss_pred EE--CCEEEEEECCCC
Q ss_conf 42--892999968898
Q 002615 776 SR--NGSIYSFEQESG 789 (900)
Q Consensus 776 s~--dg~i~~~d~~tG 789 (900)
.. ++.+.+++..+.
T Consensus 272 ~~lg~~~v~~~~~~~~ 287 (432)
T d1qksa2 272 SHMGDDSVALIGTDPE 287 (432)
T ss_dssp EBSSSSEEEEEECCTT
T ss_pred CCCCCCEEEECCCCCC
T ss_conf 3568835876245665
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.58 E-value=1.8e-11 Score=80.73 Aligned_cols=269 Identities=11% Similarity=0.073 Sum_probs=153.6
Q ss_pred CCEEEEEEC-----CCCEEEEEECCCCCEEEEEECCCCEEECEEEECCCCEEEEEE----------ECCEEEEEECCCCC
Q ss_conf 962999954-----898099997899818889864992242616735998999996----------48989999778984
Q 002615 556 SDIYLFVGS-----HSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGC----------YKGKIYFLDYLTGD 620 (900)
Q Consensus 556 ~~~~i~igs-----~~g~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~----------~dg~l~~~d~~tG~ 620 (900)
++.++|+.. ....++.||..+|+.++....+... .+.+++|+..+|+.+ .++.|..||..+++
T Consensus 12 dg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~ 89 (355)
T d2bbkh_ 12 DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL 89 (355)
T ss_dssp CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCC
T ss_conf 999999982664777671999999999499999899998--569948999999996777642015899989999999997
Q ss_pred EEEEEECCCCE-------EEEEEEECCCCEEEEEC--CCCEEEEEECCCCEEEEEECCCCCCCCCCEEECCCCEEEEEEC
Q ss_conf 79998219913-------43126747998899944--7990999987899699841049854347536315989999917
Q 002615 621 IYWTFQTCGEV-------KCQPVVDAPRQLIWCGS--HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST 691 (900)
Q Consensus 621 ~~w~~~~~~~~-------~~~~~~~~~~~~i~~gs--~dg~i~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~ 691 (900)
.+.....+... .....+.++++.+++.. .+..++.++..+++.+............+. .....+..+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 166 (355)
T d2bbkh_ 90 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPT---APDTFFMHCR 166 (355)
T ss_dssp EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEE---ETTEEEEEET
T ss_pred EEEEEECCCCCEEECCCCCCEEEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEC---CCCCEEEECC
T ss_conf 9889805886403117987349993388715773279882045430578837667705874047306---9963699938
Q ss_pred CCCEEEEECCCCCCEEEEEEEC-----CCCCEEEEEEEECCCEEEEEEECCCEEEEC-CCCCEE-EEECCCCC--EEC--
Q ss_conf 9919999917987403468530-----785111123430799899995259199997-999777-65127996--100--
Q 002615 692 SGRLTAISVKALPFHTLWLHEL-----EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSII-WRCRTGGP--IFA-- 760 (900)
Q Consensus 692 ~g~i~~~d~~~~~g~~~w~~~~-----~~~~~~s~~~~~~~~~i~~g~~~g~i~~~d-~~G~~~-w~~~~~~~--~~~-- 760 (900)
+|....+..... +...+.... .............++.++..+.++.++.++ ..+... +....... ...
T Consensus 167 dg~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (355)
T d2bbkh_ 167 DGSLAKVAFGTE-GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADG 245 (355)
T ss_dssp TSCEEEEECCSS-SCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTT
T ss_pred CCCEEEEEECCC-CEEEEEECCCCCCEECCEEEECCCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCEEEEE
T ss_conf 999899983478-7379996243330001106102153899738874699829999658990799844578441268543
Q ss_pred -CC----CCC-CCCCCEEEEEEEC----------CEEEEEECCCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCE-
Q ss_conf -56----323-3489949999428----------929999688984433882499342043223220001344567880-
Q 002615 761 -GP----CTS-FALPSQVLICSRN----------GSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDR- 823 (900)
Q Consensus 761 -~~----~~~-~~~~~~i~~gs~d----------g~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 823 (900)
.+ .+. ......+|+...+ ..++.+|..+++.+.+...+..+....+..+ +.
T Consensus 246 ~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spD------------G~~ 313 (355)
T d2bbkh_ 246 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQD------------EKP 313 (355)
T ss_dssp EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCS------------SSC
T ss_pred EECCCEEEEEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEECCC------------CCE
T ss_conf 30351089998079976788740687126517997599986788849899668998779999289------------996
Q ss_pred EEE-EECCCCCEEEEEEECC
Q ss_conf 999-9848993999996058
Q 002615 824 LVC-ICTSSGSIHILRVNLD 842 (900)
Q Consensus 824 ~i~-vg~~~G~i~~~d~~~~ 842 (900)
+++ .+..+|.|++||.+++
T Consensus 314 ~l~v~~~~d~~i~v~D~~tg 333 (355)
T d2bbkh_ 314 LLYALSTGDKTLYIHDAESG 333 (355)
T ss_dssp EEEEEETTTTEEEEEETTTC
T ss_pred EEEEEECCCCEEEEEECCCC
T ss_conf 99999789998999999999
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=1.7e-12 Score=86.90 Aligned_cols=266 Identities=12% Similarity=0.138 Sum_probs=140.0
Q ss_pred CCEEEEEECCCCEEEEEECCCCCEEEE----EECCCCEEECEEEECCC-CEEEEEEECCEEEEEECCCCCEEEEEECCC-
Q ss_conf 962999954898099997899818889----86499224261673599-899999648989999778984799982199-
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSVLWE----IKLEGRIECSAAVLADF-SQVVVGCYKGKIYFLDYLTGDIYWTFQTCG- 629 (900)
Q Consensus 556 ~~~~i~igs~~g~i~~~d~~tG~~~w~----~~~~~~~~~~~~~~~~~-~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~- 629 (900)
++.+|.+|+.|+.|+.||..+++.... ......+ .+..+.+++ ..+++|+.||.+..|+..++..........
T Consensus 22 ~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V-~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~ 100 (342)
T d1yfqa_ 22 SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL-LCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEA 100 (342)
T ss_dssp GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCE-EEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCC
T ss_pred CCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCE-EEEEEECCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 99999999799929999756998636898855899988-99999589997899812653114542044320000011111
Q ss_pred CEEEEEEEECCCCEEEEECCCCEEEEEECCCCEEE----EEECCCC--CCCCCCEEECCCCEEEEEECCCCEEEEECCCC
Q ss_conf 13431267479988999447990999987899699----8410498--54347536315989999917991999991798
Q 002615 630 EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCV----YKLPCGG--SIFGSPAIDEVHDVLYVASTSGRLTAISVKAL 703 (900)
Q Consensus 630 ~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~~g~~~----w~~~~~~--~~~~~~~~~~~~~~l~v~t~~g~i~~~d~~~~ 703 (900)
..............++.++.++.+..||..++... ....... ..............++.++.++.+..++....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~ 180 (342)
T d1yfqa_ 101 NLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC 180 (342)
T ss_dssp CSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCEEEEEEEECCCCCEEEECCCCCEEEEECCCC
T ss_conf 11111111111111111012221110202344433023000243001200000100016870246517984788760567
Q ss_pred CCEEEEEEECCC-CCEEEEE-EEECCCEEEEEEECCCEEEEC-CCCCEEE------EECC-------CCCEECCCCCCCC
Q ss_conf 740346853078-5111123-430799899995259199997-9997776------5127-------9961005632334
Q 002615 704 PFHTLWLHELEV-PAFASLC-ITSANRHVICCLVDGHVVALD-SSGSIIW------RCRT-------GGPIFAGPCTSFA 767 (900)
Q Consensus 704 ~g~~~w~~~~~~-~~~~s~~-~~~~~~~i~~g~~~g~i~~~d-~~G~~~w------~~~~-------~~~~~~~~~~~~~ 767 (900)
............ ....... ....+..+..++.+|.+..++ ......+ .... ........++...
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 260 (342)
T d1yfqa_ 181 EDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS 260 (342)
T ss_dssp TTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEEC
T ss_pred CCCCEEEEECCCCCCEEEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEECCCCCEEEEEEECCCCCCCCCCCEEEEEC
T ss_conf 63411121025422101467636999878865489959999805986401112351256555314777623543159966
Q ss_pred -CCCEEEEEEECCEEEEEECCCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCE
Q ss_conf -8994999942892999968898443388249934204322322000134456788099998489939
Q 002615 768 -LPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSI 834 (900)
Q Consensus 768 -~~~~i~~gs~dg~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vg~~~G~i 834 (900)
.++.++.|+.||.|+.||.++++.+.++...+......+. .++..+++++.++.+
T Consensus 261 p~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s------------~~~~~l~~a~sdd~~ 316 (342)
T d1yfqa_ 261 PRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA------------CSDNILCLATSDDTF 316 (342)
T ss_dssp TTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE------------ECSSEEEEEEECTHH
T ss_pred CCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEEEE------------ECCCEEEEEECCCCE
T ss_conf 98447999879998999999989498870589998799999------------479999999919927
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.57 E-value=1.8e-10 Score=74.81 Aligned_cols=267 Identities=10% Similarity=-0.014 Sum_probs=129.8
Q ss_pred CCEEEEEEC-----CCCEEEEEECCCCCEEEEEECCCCEEECEEEECCCCEEEEEEE----------CCEEEEEECCCCC
Q ss_conf 962999954-----8980999978998188898649922426167359989999964----------8989999778984
Q 002615 556 SDIYLFVGS-----HSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY----------KGKIYFLDYLTGD 620 (900)
Q Consensus 556 ~~~~i~igs-----~~g~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~----------dg~l~~~d~~tG~ 620 (900)
++.++|+.. ..+.++.+|..+|+.+..+..+... ...+++|+.++++... ++.+..||..+++
T Consensus 31 dg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~ 108 (373)
T d2madh_ 31 DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL 108 (373)
T ss_pred CCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCC
T ss_conf 997899973422578765999989999799999579886--079868999899996057753212453189999777893
Q ss_pred EEEEEECCCCEEEE-------EEEECCCCEEEEEC--CCCEEEEEECCCCEEEEEECCCCCCCCCCEEECCCCEE-EEEE
Q ss_conf 79998219913431-------26747998899944--79909999878996998410498543475363159899-9991
Q 002615 621 IYWTFQTCGEVKCQ-------PVVDAPRQLIWCGS--HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVL-YVAS 690 (900)
Q Consensus 621 ~~w~~~~~~~~~~~-------~~~~~~~~~i~~gs--~dg~i~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l-~v~t 690 (900)
..+....+...... ..+..++..+++.. .++.+..++..+++........ ....+.+.+..+ +...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~s~~g~~~~v~~~ 184 (373)
T d2madh_ 109 PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSP----TCYHIHPGAPSTFYLLC 184 (373)
T ss_pred EEEEEECCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCEEEEEECCC----EEEEEECCCCCEEEEEC
T ss_conf 88897268851368516897089985899379999869874677623687289982452----06999628991999994
Q ss_pred CCCCEEEEECCCCCCEEEEEEECCCC-----CEEEEEEEECCCEEEEEEECCCEEEEC-CCCCEEEEEC----CCCC--E
Q ss_conf 79919999917987403468530785-----111123430799899995259199997-9997776512----7996--1
Q 002615 691 TSGRLTAISVKALPFHTLWLHELEVP-----AFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCR----TGGP--I 758 (900)
Q Consensus 691 ~~g~i~~~d~~~~~g~~~w~~~~~~~-----~~~s~~~~~~~~~i~~g~~~g~i~~~d-~~G~~~w~~~----~~~~--~ 758 (900)
.+|.+..++..+ +...+....... ..........++..+..+.++.++.++ .++....... .... .
T Consensus 185 ~dg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (373)
T d2madh_ 185 AQGGLAKTDHAG--GAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKAD 262 (373)
T ss_pred CCCEEEEEECCC--CEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEEEECCCCCCEEEE
T ss_conf 799399997477--426678863003667530434588789942999258965999976899078977630564757866
Q ss_pred ECCC------C---------CCCCCCCEEEEEEECCEEEEEECCCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCE
Q ss_conf 0056------3---------233489949999428929999688984433882499342043223220001344567880
Q 002615 759 FAGP------C---------TSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDR 823 (900)
Q Consensus 759 ~~~~------~---------~~~~~~~~i~~gs~dg~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (900)
...+ . .....+..+.....++.+..+|..+++.++....+..+....+..+ +.
T Consensus 263 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spD------------G~ 330 (373)
T d2madh_ 263 TWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQD------------GG 330 (373)
T ss_pred EECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCC------------CC
T ss_conf 413674133577149975999548882478625898699998999969898668998258999989------------99
Q ss_pred E-E-EEECCCCCEEEEEEECC
Q ss_conf 9-9-99848993999996058
Q 002615 824 L-V-CICTSSGSIHILRVNLD 842 (900)
Q Consensus 824 ~-i-~vg~~~G~i~~~d~~~~ 842 (900)
. + ..+..+|.|++||..++
T Consensus 331 ~~l~vt~~~d~~v~v~D~~tg 351 (373)
T d2madh_ 331 PDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred EEEEEEECCCCEEEEEECCCC
T ss_conf 899999679992999999999
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.51 E-value=1.6e-11 Score=81.01 Aligned_cols=286 Identities=9% Similarity=0.012 Sum_probs=157.5
Q ss_pred CCCEEECEEEECCCCEEEEEEECCEEEEEECCCCCEE----EEEECCCCEEEEEEEECC-CCEEEEECCCCEEEEEECCC
Q ss_conf 9922426167359989999964898999977898479----998219913431267479-98899944799099998789
Q 002615 586 EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIY----WTFQTCGEVKCQPVVDAP-RQLIWCGSHDHNLYALDFRN 660 (900)
Q Consensus 586 ~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~----w~~~~~~~~~~~~~~~~~-~~~i~~gs~dg~i~~~d~~~ 660 (900)
+.....+..+++++..+++++.||.|+.||..++... ..+.....+.+ ..+.++ +..+++|+.|+.+..|+...
T Consensus 10 h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~-v~f~~~~~~~l~sg~~d~~v~~w~~~~ 88 (342)
T d1yfqa_ 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC-CNFIDNTDLQIYVGTVQGEILKVDLIG 88 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEE-EEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred CCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEE-EEEECCCCCEEEECCCCCCEEEEECCC
T ss_conf 9897888999589999999979992999975699863689885589998899-999589997899812653114542044
Q ss_pred CEEEEEECCCCCC-CCCCEEECCCCEEEEEECCCCEEEEECCCCCCEEEEEE--ECCCC----CEEEEEEEECCCEEEEE
Q ss_conf 9699841049854-34753631598999991799199999179874034685--30785----11112343079989999
Q 002615 661 YRCVYKLPCGGSI-FGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLH--ELEVP----AFASLCITSANRHVICC 733 (900)
Q Consensus 661 g~~~w~~~~~~~~-~~~~~~~~~~~~l~v~t~~g~i~~~d~~~~~g~~~w~~--~~~~~----~~~s~~~~~~~~~i~~g 733 (900)
+............ ............++.++.++.+..+|.+. +...... ..... .............++.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (342)
T d1yfqa_ 89 SPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRN--YGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVG 166 (342)
T ss_dssp SSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHH--HTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC--CCCCEEEECCCCCCCCCCEEEEEEEECCCCCEEEE
T ss_conf 3200000111111111111111111111101222111020234--44330230002430012000001000168702465
Q ss_pred EECCCEEEEC-CCCCEEEE----ECCCCCEECCCCCCCCCCCEEEEEEECCEEEEEECCCCCEEEE------EECCCCEE
Q ss_conf 5259199997-99977765----1279961005632334899499994289299996889844338------82499342
Q 002615 734 LVDGHVVALD-SSGSIIWR----CRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWE------YSVGDPIT 802 (900)
Q Consensus 734 ~~~g~i~~~d-~~G~~~w~----~~~~~~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~tG~~~w~------~~~~~~~~ 802 (900)
+.++.+..++ ..+..... ........... ........+..++.+|.+..++.......+. ........
T Consensus 167 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (342)
T d1yfqa_ 167 MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVA-LLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL 245 (342)
T ss_dssp ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEE-ECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT
T ss_pred CCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEE-EECCCCCEEEEECCCCEEEEEEECCCCCEEECCCCCEEEEEEECC
T ss_conf 1798478876056763411121025422101467-636999878865489959999805986401112351256555314
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECC-CCCCCCCCEEECCEEEEE
Q ss_conf 0432232200013445678809999848993999996058566555554532035653026-984224863668789994
Q 002615 803 ASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLEL-QGDIFSSPVMIGGRVFVG 881 (900)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~i~vg~~~G~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~ss~~~~~~~l~vg 881 (900)
...... .........+.++.++.|+.||.|++||.+++ +.+..+.. +.....+....++.+.++
T Consensus 246 ~~~~~~--~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~-------------~~l~~~~~~~~~~~~~~s~~~~~l~~a 310 (342)
T d1yfqa_ 246 KDTNLA--YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR-------------KKIKNFAKFNEDSVVKIACSDNILCLA 310 (342)
T ss_dssp TCCSSC--CCEEEEEECTTTCCEEEEETTSCEEEEETTTT-------------EEEEECCCCSSSEEEEEEECSSEEEEE
T ss_pred CCCCCC--CCCEEEEECCCCCEEEEECCCCEEEEEECCCC-------------CEEEEECCCCCCEEEEEEECCCEEEEE
T ss_conf 777623--54315996698447999879998999999989-------------498870589998799999479999999
Q ss_pred EECCEEEEE
Q ss_conf 308939999
Q 002615 882 CRDDYIYCI 890 (900)
Q Consensus 882 ~~dg~l~~l 890 (900)
+.|+....+
T Consensus 311 ~sdd~~~~~ 319 (342)
T d1yfqa_ 311 TSDDTFKTN 319 (342)
T ss_dssp EECTHHHHC
T ss_pred ECCCCEEEE
T ss_conf 919927883
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.50 E-value=1.1e-11 Score=82.00 Aligned_cols=170 Identities=9% Similarity=0.045 Sum_probs=81.0
Q ss_pred EEEECCCCEEEEEECCCCCEEEEEECCCCEEECEEEECCCCEEEEEEECCEEEEEECCCCCEEEEEECCCCEEEEEEEEC
Q ss_conf 99954898099997899818889864992242616735998999996489899997789847999821991343126747
Q 002615 560 LFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDA 639 (900)
Q Consensus 560 i~igs~~g~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 639 (900)
++.|+.||.|..||..++.. .+.....+..+.. +..++.++.|+.+..|+..+. ......... ...
T Consensus 24 l~sgs~Dg~v~~Wd~~~~~~-----~h~~~V~~~~~~~-~~~~~s~s~D~~v~~w~~~~~------~~~~~~~~~-~~~- 89 (287)
T d1pgua2 24 LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDNSK-AQEYSSISWDDTLKVNGITKH------EFGSQPKVA-SAN- 89 (287)
T ss_dssp TEEEETTSCEEETTTTEEEC-----CCCSCEEEEECCS-TTCCEEEETTTEEEETTEEEE------ECSSCEEEE-EEC-
T ss_pred EEEEECCCEEEEEECCCCCC-----CCCCCEEEEEECC-CCEEEEEEECCCCCCCCCCCC------CCCCCEEEE-EEC-
T ss_conf 78984899199998999888-----8778789999659-972898861012221111111------112210146-641-
Q ss_pred CCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCEEECCCCEEEEEECCC-CEEEEECCCCCCEEEEEEECC-CCC
Q ss_conf 998899944799099998789969984104985434753631598999991799-199999179874034685307-851
Q 002615 640 PRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSG-RLTAISVKALPFHTLWLHELE-VPA 717 (900)
Q Consensus 640 ~~~~i~~gs~dg~i~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g-~i~~~d~~~~~g~~~w~~~~~-~~~ 717 (900)
.++.+++...++.+..++..+++.+.......... ++...+..+++++.++ .+..++... .+........ ...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~ 164 (287)
T d1pgua2 90 NDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS---AVSLSQNYVAVGLEEGNTIQVFKLSD--LEVSFDLKTPLRAK 164 (287)
T ss_dssp SSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE---EEEECSSEEEEEETTTSCEEEEETTE--EEEEEECSSCCSSC
T ss_pred CCCCEEEEEECCCCEEEECCCEEEEEECCCCCEEE---EEECCCCCEEEECCCCCEEEEEECCC--CCEEEEEEECCCCC
T ss_conf 67856999603321000011003543101222035---65214751110002210002100012--21000121024785
Q ss_pred EEEEEEEECCCEEEEEEECCCEEEEC-CCCCE
Q ss_conf 11123430799899995259199997-99977
Q 002615 718 FASLCITSANRHVICCLVDGHVVALD-SSGSI 748 (900)
Q Consensus 718 ~~s~~~~~~~~~i~~g~~~g~i~~~d-~~G~~ 748 (900)
..+..+.+++..+++++.+|.+..|| .+++.
T Consensus 165 v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~ 196 (287)
T d1pgua2 165 PSYISISPSETYIAAGDVMGKILLYDLQSREV 196 (287)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCEEECCCCC
T ss_conf 36999516765211011111100000023321
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.49 E-value=6.3e-10 Score=71.56 Aligned_cols=240 Identities=9% Similarity=-0.028 Sum_probs=110.8
Q ss_pred EEEECCCEEEEEEC----------CCCEEEEEECCCCCEEEEEECCCCEE-------ECEEEECCCCEEEEEEEC--CEE
Q ss_conf 99518962999954----------89809999789981888986499224-------261673599899999648--989
Q 002615 551 VVLKDSDIYLFVGS----------HSHKFICADAKRSSVLWEIKLEGRIE-------CSAAVLADFSQVVVGCYK--GKI 611 (900)
Q Consensus 551 v~~~~~~~~i~igs----------~~g~i~~~d~~tG~~~w~~~~~~~~~-------~~~~~~~~~~~i~vg~~d--g~l 611 (900)
+.+..++.++++++ .++.+..||..+++..+....+.... ....++.++..+++...+ +.+
T Consensus 71 ~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~ 150 (373)
T d2madh_ 71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAV 150 (373)
T ss_pred EEECCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCE
T ss_conf 79868999899996057753212453189999777893888972688513685168970899858993799998698746
Q ss_pred EEEECCCCCEEEEEECCCCEEEEEEEECCCCE-EEEECCCCEEEEEECCCCEEEEEECCCC-----CCCCCCEEECCCCE
Q ss_conf 99977898479998219913431267479988-9994479909999878996998410498-----54347536315989
Q 002615 612 YFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL-IWCGSHDHNLYALDFRNYRCVYKLPCGG-----SIFGSPAIDEVHDV 685 (900)
Q Consensus 612 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~-i~~gs~dg~i~~~d~~~g~~~w~~~~~~-----~~~~~~~~~~~~~~ 685 (900)
..++..+++........ ....+.+++.. ++..+.++.++.++..+++..+...... ...........++.
T Consensus 151 ~~~~~~~~~~~~~~~~~----~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (373)
T d2madh_ 151 GLVVQGGSSDDQLLSSP----TCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR 226 (373)
T ss_pred EEEECCCCEEEEEECCC----EEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEEECCCCE
T ss_conf 77623687289982452----06999628991999994799399997477426678863003667530434588789942
Q ss_pred EEEEECCCCEEEEECCCCCCEEEEEEECCCC----------CEEEEEEEECCCEEE----------EEEECCCEEEEC-C
Q ss_conf 9999179919999917987403468530785----------111123430799899----------995259199997-9
Q 002615 686 LYVASTSGRLTAISVKALPFHTLWLHELEVP----------AFASLCITSANRHVI----------CCLVDGHVVALD-S 744 (900)
Q Consensus 686 l~v~t~~g~i~~~d~~~~~g~~~w~~~~~~~----------~~~s~~~~~~~~~i~----------~g~~~g~i~~~d-~ 744 (900)
++..+.++.++.++................. .........++..++ ....++.+..+| .
T Consensus 227 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 306 (373)
T d2madh_ 227 IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGL 306 (373)
T ss_pred EEEECCCCEEEEEECCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCEEEEEECC
T ss_conf 99925896599997689907897763056475786641367413357714997599954888247862589869999899
Q ss_pred CCCEEEEECCCCCEECCCCCCCCCCC-E-EEE-EEECCEEEEEECCCCCEEEEEEC
Q ss_conf 99777651279961005632334899-4-999-94289299996889844338824
Q 002615 745 SGSIIWRCRTGGPIFAGPCTSFALPS-Q-VLI-CSRNGSIYSFEQESGNLLWEYSV 797 (900)
Q Consensus 745 ~G~~~w~~~~~~~~~~~~~~~~~~~~-~-i~~-gs~dg~i~~~d~~tG~~~w~~~~ 797 (900)
+++.++....+....... ...++ . +|+ +..++.|++||..+|+.+.+...
T Consensus 307 t~~~~~~~~~~~~~~~~a---~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~ 359 (373)
T d2madh_ 307 VGQTSSQISLGHDVDAIS---VAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVE 359 (373)
T ss_pred CCCEEEEECCCCCEEEEE---ECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECC
T ss_conf 996989866899825899---99899989999967999299999999989999888
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.47 E-value=5.1e-11 Score=78.04 Aligned_cols=256 Identities=13% Similarity=0.065 Sum_probs=126.0
Q ss_pred EEEEEECCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCEEEC
Q ss_conf 99996489899997789847999821991343126747998899944799099998789969984104985434753631
Q 002615 602 VVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDE 681 (900)
Q Consensus 602 i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~~g~~~w~~~~~~~~~~~~~~~~ 681 (900)
++.|+.||.|+.||..++.. .+........+. .++.++.++.|+.+..|+..+.+ ....+. ......
T Consensus 24 l~sgs~Dg~v~~Wd~~~~~~-----~h~~~V~~~~~~-~~~~~~s~s~D~~v~~w~~~~~~------~~~~~~-~~~~~~ 90 (287)
T d1pgua2 24 LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDNS-KAQEYSSISWDDTLKVNGITKHE------FGSQPK-VASANN 90 (287)
T ss_dssp TEEEETTSCEEETTTTEEEC-----CCCSCEEEEECC-STTCCEEEETTTEEEETTEEEEE------CSSCEE-EEEECS
T ss_pred EEEEECCCEEEEEECCCCCC-----CCCCCEEEEEEC-CCCEEEEEEECCCCCCCCCCCCC------CCCCEE-EEEECC
T ss_conf 78984899199998999888-----877878999965-99728988610122211111111------122101-466416
Q ss_pred CCCEEEEEECCCCEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCEEEEEEECC-CEEEEC-CCCCEEEEECC--CCC
Q ss_conf 59899999179919999917987403468530785111123430799899995259-199997-99977765127--996
Q 002615 682 VHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDG-HVVALD-SSGSIIWRCRT--GGP 757 (900)
Q Consensus 682 ~~~~l~v~t~~g~i~~~d~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~g~~~g-~i~~~d-~~G~~~w~~~~--~~~ 757 (900)
++.+++...++.+..++..+ ++.........+ ...+...+..+++++.++ .+..++ .+.+....... ..+
T Consensus 91 -~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 164 (287)
T d1pgua2 91 -DGFTAVLTNDDDLLILQSFT--GDIIKSVRLNSP---GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAK 164 (287)
T ss_dssp -SSEEEEEETTSEEEEEETTT--CCEEEEEECSSC---EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSC
T ss_pred -CCCEEEEEECCCCEEEECCC--EEEEEECCCCCE---EEEEECCCCCEEEECCCCCEEEEEECCCCCEEEEEEECCCCC
T ss_conf -78569996033210000110--035431012220---356521475111000221000210001221000121024785
Q ss_pred EECCCCCCCCCCCEEEEEEECCEEEEEECCCCCEEEE-EECCC-CEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEE
Q ss_conf 1005632334899499994289299996889844338-82499-342043223220001344567880999984899399
Q 002615 758 IFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWE-YSVGD-PITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIH 835 (900)
Q Consensus 758 ~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~tG~~~w~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~vg~~~G~i~ 835 (900)
+.+.. ....+..+++++.+|.++.||..+++.... +..+. .+....+... . .........+.+++.|+.||.|+
T Consensus 165 v~~~~--~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~-~-~~~~~~~~~~~~l~sgs~D~~i~ 240 (287)
T d1pgua2 165 PSYIS--ISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPA-E-KGANEEEIEEDLVATGSLDTNIF 240 (287)
T ss_dssp EEEEE--ECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCC-C-------CCSCCEEEEEETTSCEE
T ss_pred EEEEE--ECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCC-C-CCCCCCCCCCCEEEEECCCCEEE
T ss_conf 36999--51676521101111110000002332110001111111100000136-5-41001267887027664999599
Q ss_pred EEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEE-ECCEEEEEEECCEEEEEEC
Q ss_conf 99960585665555545320356530269842248636-6878999430893999981
Q 002615 836 ILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM-IGGRVFVGCRDDYIYCIAL 892 (900)
Q Consensus 836 ~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~-~~~~l~vg~~dg~l~~ld~ 892 (900)
+|+.+.+. +......-+...+..... .++.++.++.|+.+..|+.
T Consensus 241 iw~~~~~~------------~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 241 IYSVKRPM------------KIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286 (287)
T ss_dssp EEESSCTT------------CCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred EEECCCCC------------EEEEEECCCCCCEEEEEECCCCEEEEEECCCEEEEEEE
T ss_conf 98889997------------58999278789858999989998999979992999997
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.46 E-value=7.6e-11 Score=77.04 Aligned_cols=308 Identities=14% Similarity=0.039 Sum_probs=162.0
Q ss_pred EEEECCCEEEEEECCCCEEEEEECCCCCE--EEEEECCC---CEEECEEEECCCCEEEE-EEECCEEEEEECCCCCEEEE
Q ss_conf 99518962999954898099997899818--88986499---22426167359989999-96489899997789847999
Q 002615 551 VVLKDSDIYLFVGSHSHKFICADAKRSSV--LWEIKLEG---RIECSAAVLADFSQVVV-GCYKGKIYFLDYLTGDIYWT 624 (900)
Q Consensus 551 v~~~~~~~~i~igs~~g~i~~~d~~tG~~--~w~~~~~~---~~~~~~~~~~~~~~i~v-g~~dg~l~~~d~~tG~~~w~ 624 (900)
+.++.++.++|+++.++.+..||..+++. .-+..... .+..++.+++|+.++++ +..++.+..||..+++.+..
T Consensus 67 v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~ 146 (432)
T d1qksa2 67 SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI 146 (432)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEE
T ss_pred EEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCCEEE
T ss_conf 99889999999982899978998108981288998448898776984321888888999817898279990765542254
Q ss_pred EECCCC-----------EEEEEEEECCCCEEE-EECCCCEEEEEECCCCEE--EEEECCCCCCCCCCEEECCCCEEEEEE
Q ss_conf 821991-----------343126747998899-944799099998789969--984104985434753631598999991
Q 002615 625 FQTCGE-----------VKCQPVVDAPRQLIW-CGSHDHNLYALDFRNYRC--VYKLPCGGSIFGSPAIDEVHDVLYVAS 690 (900)
Q Consensus 625 ~~~~~~-----------~~~~~~~~~~~~~i~-~gs~dg~i~~~d~~~g~~--~w~~~~~~~~~~~~~~~~~~~~l~v~t 690 (900)
+..+.. ......+.+++..++ ....++.+..+|..+++. ++....+.. .....+++++..+++++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~-~~~~~~spdg~~~~va~ 225 (432)
T d1qksa2 147 QSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERF-LHDGGLDGSHRYFITAA 225 (432)
T ss_dssp EECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSS-EEEEEECTTSCEEEEEE
T ss_pred ECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCEEEEECCCCC-CCCCEECCCCCEEEEEC
T ss_conf 02477643522016888505899878999899998168829999843787522799833675-42653889887999951
Q ss_pred CC-CCEEEEECCCCCCEEEEEEECCCCCE----EEEEEEECCCEEEEEEE--CCCEEEEC-CCCCEEEEECCCCCEECCC
Q ss_conf 79-91999991798740346853078511----11234307998999952--59199997-9997776512799610056
Q 002615 691 TS-GRLTAISVKALPFHTLWLHELEVPAF----ASLCITSANRHVICCLV--DGHVVALD-SSGSIIWRCRTGGPIFAGP 762 (900)
Q Consensus 691 ~~-g~i~~~d~~~~~g~~~w~~~~~~~~~----~s~~~~~~~~~i~~g~~--~g~i~~~d-~~G~~~w~~~~~~~~~~~~ 762 (900)
.+ +.+..++..+ ++..+....+.... .........+.++.... ++.+.+++ ..... +.. ...+...
T Consensus 226 ~~~~~v~v~d~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~-~~~--~~~v~~~- 299 (432)
T d1qksa2 226 NARNKLVVIDTKE--GKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH-PDN--AWKILDS- 299 (432)
T ss_dssp GGGTEEEEEETTT--TEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC-TTT--BTSEEEE-
T ss_pred CCCCEEEEEECCC--CEEEEEECCCCCCCCCCCCCCEECCCCCCEECCCCCCCCEEEECCCCCCCC-CCC--CCEEEEE-
T ss_conf 6663677761445--268887214862245676641014898831021356883587624566555-465--6577799-
Q ss_pred CCCCCCCCEEEEEEECCEEEEEECCCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf 32334899499994289299996889844338824993420432232200013445678809999848993999996058
Q 002615 763 CTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 842 (900)
Q Consensus 763 ~~~~~~~~~i~~gs~dg~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vg~~~G~i~~~d~~~~ 842 (900)
+.....+.+++++.++..+++...+... ......+..+. ++..+..+..++.+.+|+..++
T Consensus 300 -~~~~~g~~~~~~s~p~~~~lw~~~~~~~------~~~~~~sv~vp------------Dg~~la~~s~d~~~k~w~~~~~ 360 (432)
T d1qksa2 300 -FPALGGGSLFIKTHPNSQYLYVDATLNP------EAEISGSVAVF------------DIKAMTGDGSDPEFKTLPIAEW 360 (432)
T ss_dssp -EECSCSCCCCEECCTTCSEEEEECTTCS------SHHHHTCEEEE------------EGGGCCCSSSCCCEEEECHHHH
T ss_pred -EECCCCCEEEEEECCCCCCEEECCCCCC------CCCEEEEEEEE------------ECHHHCCCCCCCCEEECCCCCC
T ss_conf -8868997688872688641021126788------87703599999------------6246104556784486334344
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCCCCCCEEECCEEEEEEE-----CCEEEEEECCCCCCC
Q ss_conf 56655555453203565302698422486366878999430-----893999981044333
Q 002615 843 VTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCR-----DDYIYCIALETQHLE 898 (900)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~l~~~~~ss~~~~~~~l~vg~~-----dg~l~~ld~~tg~~~ 898 (900)
... .+...... + +-.+| ++.++|+++. +|.+.+||.+|+++.
T Consensus 361 ~~l-----~~~~~~v~-~------~~fS~--DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~ 407 (432)
T d1qksa2 361 AGI-----TEGQPRVV-Q------GEFNK--DGTEVWFSVWNGKDQESALVVVDDKTLELK 407 (432)
T ss_dssp HTC-----CSSCCEEE-E------EEECT--TSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred CCC-----CCCCCCEE-E------EEECC--CCCEEEEEEECCCCCCCCEEEEECCCCEEE
T ss_conf 445-----78998689-7------67989--999999997048888886899999995588
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.41 E-value=8.6e-10 Score=70.78 Aligned_cols=239 Identities=13% Similarity=0.115 Sum_probs=108.0
Q ss_pred EEEEECCCEEEEEEC----------CCCEEEEEECCCCCEEEEEECCCCE-------EECEEEECCCCEEEEEEE--CCE
Q ss_conf 599518962999954----------8980999978998188898649922-------426167359989999964--898
Q 002615 550 LVVLKDSDIYLFVGS----------HSHKFICADAKRSSVLWEIKLEGRI-------ECSAAVLADFSQVVVGCY--KGK 610 (900)
Q Consensus 550 ~v~~~~~~~~i~igs----------~~g~i~~~d~~tG~~~w~~~~~~~~-------~~~~~~~~~~~~i~vg~~--dg~ 610 (900)
.+.++.++.++|+.+ .++.|..||..+++.+.....+... .....++.++..+++... +..
T Consensus 51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~ 130 (355)
T d2bbkh_ 51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 130 (355)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred CEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEECCCCCCEEEEECCCCEEEEECCCCCCE
T ss_conf 56994899999999677764201589998999999999798898058864031179873499933887157732798820
Q ss_pred EEEEECCCCCEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEEC-CCCEEEEEECC-----CCCCCCCCEEECCCC
Q ss_conf 999977898479998219913431267479988999447990999987-89969984104-----985434753631598
Q 002615 611 IYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDF-RNYRCVYKLPC-----GGSIFGSPAIDEVHD 684 (900)
Q Consensus 611 l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~-~~g~~~w~~~~-----~~~~~~~~~~~~~~~ 684 (900)
++.++..+++.......+......+. .....+..+.|+....+.. ..+...+.... .......+.....+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (355)
T d2bbkh_ 131 VGVVDLEGKAFKRMLDVPDCYHIFPT---APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG 207 (355)
T ss_dssp EEEEETTTTEEEEEEECCSEEEEEEE---ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred EEEEECCCCCEEEEEECCCCCEEEEC---CCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCEECCEEEECCCCCCCC
T ss_conf 45430578837667705874047306---996369993899989998347873799962433300011061021538997
Q ss_pred EEEEEECCCCEEEEECCCCCCEEEE--EEECCCC----------CEEEEEEEECCCEEEEEEEC----------CCEEEE
Q ss_conf 9999917991999991798740346--8530785----------11112343079989999525----------919999
Q 002615 685 VLYVASTSGRLTAISVKALPFHTLW--LHELEVP----------AFASLCITSANRHVICCLVD----------GHVVAL 742 (900)
Q Consensus 685 ~l~v~t~~g~i~~~d~~~~~g~~~w--~~~~~~~----------~~~s~~~~~~~~~i~~g~~~----------g~i~~~ 742 (900)
.++..+.++.++.++... +.... ....... .........++..+++...+ ..+..+
T Consensus 208 ~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~ 285 (355)
T d2bbkh_ 208 RLVWPTYTGKIHQIDLSS--GDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVL 285 (355)
T ss_dssp EEEEEBTTSEEEEEECTT--SSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred EEEEECCCCEEEEEECCC--CCEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCEEECCCCCEEEEE
T ss_conf 388746998299996589--907998445784412685433035108999807997678874068712651799759998
Q ss_pred C-CCCCEEEEECCCCCEECCCCCCCCCCCE--EEEE-EECCEEEEEECCCCCEEEEEE
Q ss_conf 7-9997776512799610056323348994--9999-428929999688984433882
Q 002615 743 D-SSGSIIWRCRTGGPIFAGPCTSFALPSQ--VLIC-SRNGSIYSFEQESGNLLWEYS 796 (900)
Q Consensus 743 d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~--i~~g-s~dg~i~~~d~~tG~~~w~~~ 796 (900)
| .+++.+.+...+...... ....++. +++. ..++.|++||.++|+++.++.
T Consensus 286 d~~t~~~~~~~~~~~~~~~~---a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~ 340 (355)
T d2bbkh_ 286 DAKTGERLAKFEMGHEIDSI---NVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN 340 (355)
T ss_dssp ETTTCCEEEEEEEEEEECEE---EECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred ECCCCCEEEEECCCCCEEEE---EECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEE
T ss_conf 67888498996689987799---99289996999997899989999999998999992
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.39 E-value=9.3e-11 Score=76.50 Aligned_cols=148 Identities=12% Similarity=-0.050 Sum_probs=100.4
Q ss_pred EECCCEEEEEECC-C-CEEEEEECCCCCEEEEEECCCCEEECEEEECCCCEEEEEEECCEEEEEECCCCCEEEEEECCCC
Q ss_conf 5189629999548-9-8099997899818889864992242616735998999996489899997789847999821991
Q 002615 553 LKDSDIYLFVGSH-S-HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE 630 (900)
Q Consensus 553 ~~~~~~~i~igs~-~-g~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~ 630 (900)
+..++..+++++. + ..++.||..+|+..-.. .+........+++++.++++++.++.++.|+..+++.......+..
T Consensus 50 ~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~-~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (360)
T d1k32a3 50 RGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA 128 (360)
T ss_dssp ECSSSEEEEEEEETTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS
T ss_pred ECCCCCEEEEEECCCCCEEEEEECCCCCEEEEE-CCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCEEEEEECCCC
T ss_conf 989999999999289989999989999488750-8971277412114543210001111100000122210000001355
Q ss_pred EEEEEEEECCCCEEEEE----------CCCCEEEEEECCCCEEEEEECCCCCCCCCCEEECCCCEEEEEECCCCEEEEEC
Q ss_conf 34312674799889994----------47990999987899699841049854347536315989999917991999991
Q 002615 631 VKCQPVVDAPRQLIWCG----------SHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISV 700 (900)
Q Consensus 631 ~~~~~~~~~~~~~i~~g----------s~dg~i~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~i~~~d~ 700 (900)
....+.+.+++..++++ ..++.++.||..+++......... ....+...+++..|+.++.++.+..++.
T Consensus 129 ~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~s~~~~~~~~d~ 207 (360)
T d1k32a3 129 MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENS-HDYAPAFDADSKNLYYLSYRSLDPSPDR 207 (360)
T ss_dssp CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSS-BEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred CCCCHHHCCCEEEEEEECCCCCCCEEECCCCCEEEECCCCCCEEEECCCCC-CCCCCCCCCCCCEEEEEECCCCEECCCC
T ss_conf 202301213225665212331211000256542663045571353035432-2110012577999999959985575333
Q ss_pred CC
Q ss_conf 79
Q 002615 701 KA 702 (900)
Q Consensus 701 ~~ 702 (900)
..
T Consensus 208 ~~ 209 (360)
T d1k32a3 208 VV 209 (360)
T ss_dssp SS
T ss_pred CC
T ss_conf 54
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.36 E-value=3.9e-09 Score=66.85 Aligned_cols=257 Identities=11% Similarity=-0.071 Sum_probs=139.2
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEECEEEECCCCEEEEEE----------ECCEEEEEECCCCCEEEEEECCCC------
Q ss_conf 8099997899818889864992242616735998999996----------489899997789847999821991------
Q 002615 567 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGC----------YKGKIYFLDYLTGDIYWTFQTCGE------ 630 (900)
Q Consensus 567 g~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~----------~dg~l~~~d~~tG~~~w~~~~~~~------ 630 (900)
..++.+|..+++.+-....+... .+.++.++..+++.+ .++.|..||..+++..+....+..
T Consensus 46 ~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g 123 (368)
T d1mdah_ 46 TENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred CEEEEEECCCCCEEEEEECCCCC--CCEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEECCC
T ss_conf 21799708998377888578777--5139899988999755676401035678699998999938306437854210246
Q ss_pred -EEEEEEEECCCCEEEEEC-CCCEEEEEECCCCEEEEEECCCCCCCCCCEEECCCCEEEEEECCCCEEEEECCCCCCEEE
Q ss_conf -343126747998899944-799099998789969984104985434753631598999991799199999179874034
Q 002615 631 -VKCQPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTL 708 (900)
Q Consensus 631 -~~~~~~~~~~~~~i~~gs-~dg~i~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~i~~~d~~~~~g~~~ 708 (900)
......+.+++..++++. .++.+..||..+++........+.....+ ......+..+.+|.+..++.... +...
T Consensus 124 ~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~Dg~~~~~~~~~~-~~~~ 199 (368)
T d1mdah_ 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHP---GAAATHYLGSCPASLAASDLAAA-PAAA 199 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEE---EETTEEECCCCTTSCEEEECCSS-CCCC
T ss_pred CCCCCEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEECC---CCCCEEEEECCCCCEEEEEECCC-CEEE
T ss_conf 8864058878998999996899859999899893867860467523746---99823999948998899982689-6266
Q ss_pred EEEECCC----CCEEEEEEEECCCEEEEEEECCCEEEEC-CCCCEE-EEECCCCC-------E-ECCC--CCCCCCCCEE
Q ss_conf 6853078----5111123430799899995259199997-999777-65127996-------1-0056--3233489949
Q 002615 709 WLHELEV----PAFASLCITSANRHVICCLVDGHVVALD-SSGSII-WRCRTGGP-------I-FAGP--CTSFALPSQV 772 (900)
Q Consensus 709 w~~~~~~----~~~~s~~~~~~~~~i~~g~~~g~i~~~d-~~G~~~-w~~~~~~~-------~-~~~~--~~~~~~~~~i 772 (900)
|...... ............+. ++...++.++.++ ..+... +....... . .... .......+.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~ 278 (368)
T d1mdah_ 200 GIVGAQCTGAQNCSSQAAQANYPGM-LVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGI 278 (368)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTE-EEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEE
T ss_pred EEEECCCCCCCCCCEEECCCCCCCE-EEEECCCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEE
T ss_conf 6530311135666466010155868-999348977999606993699760246543045540127883568871799879
Q ss_pred EEEEECC---------EEEEEECCCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCE-EEEEE-CCCCCEEEEEEEC
Q ss_conf 9994289---------29999688984433882499342043223220001344567880-99998-4899399999605
Q 002615 773 LICSRNG---------SIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDR-LVCIC-TSSGSIHILRVNL 841 (900)
Q Consensus 773 ~~gs~dg---------~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~vg-~~~G~i~~~d~~~ 841 (900)
|+...++ .++.+|..+++.+.....+..+....+.. +++ ++|+. ..++.|++||..+
T Consensus 279 ~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~sp------------DG~~~ly~s~~~~~~v~v~D~~t 346 (368)
T d1mdah_ 279 MILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQ------------DGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp EEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECC------------SSSCEEEEEETTTTEEEEEESSS
T ss_pred EEEECCCCCEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECC------------CCCEEEEEEECCCCEEEEEECCC
T ss_conf 998358973340588649999899994868955899651799998------------99989999948999699998999
Q ss_pred C
Q ss_conf 8
Q 002615 842 D 842 (900)
Q Consensus 842 ~ 842 (900)
+
T Consensus 347 g 347 (368)
T d1mdah_ 347 D 347 (368)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.35 E-value=6.2e-09 Score=65.68 Aligned_cols=275 Identities=12% Similarity=0.056 Sum_probs=140.6
Q ss_pred EEEECCCEEEEEECCCCEEEEEECCCCCEEEE--EECCC---CEEECEEEECCCCEEEEEE-ECCEEEEEECCCCCEEEE
Q ss_conf 99518962999954898099997899818889--86499---2242616735998999996-489899997789847999
Q 002615 551 VVLKDSDIYLFVGSHSHKFICADAKRSSVLWE--IKLEG---RIECSAAVLADFSQVVVGC-YKGKIYFLDYLTGDIYWT 624 (900)
Q Consensus 551 v~~~~~~~~i~igs~~g~i~~~d~~tG~~~w~--~~~~~---~~~~~~~~~~~~~~i~vg~-~dg~l~~~d~~tG~~~w~ 624 (900)
+.++.++.++|+++.++.+..||..+++.... ..... ....++.+++|+.++++++ .++.+..+|..++.....
T Consensus 67 vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~ 146 (426)
T d1hzua2 67 SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQI 146 (426)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEE
T ss_pred EEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEE
T ss_conf 99989999999995899889997568860489998678887645885002688987999635897699985776412578
Q ss_pred EECCCCEEEEEEEECCCC-EEEEECCCCEEEEEEC-CCCEEEEEEC-----------CCCCCCCCCEEECCCCEEEEEEC
Q ss_conf 821991343126747998-8999447990999987-8996998410-----------49854347536315989999917
Q 002615 625 FQTCGEVKCQPVVDAPRQ-LIWCGSHDHNLYALDF-RNYRCVYKLP-----------CGGSIFGSPAIDEVHDVLYVAST 691 (900)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~-~i~~gs~dg~i~~~d~-~~g~~~w~~~-----------~~~~~~~~~~~~~~~~~l~v~t~ 691 (900)
...+........+..... ...+.+.++....+.. .++...+... ..+.......+.+.+..++++..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~ 226 (426)
T d1hzua2 147 VSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAAN 226 (426)
T ss_dssp EECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEET
T ss_pred EECCCCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCEEEEECCCCCEEEEEEE
T ss_conf 62267773643642788503899878787888852789769999924665204577566775376137788867886420
Q ss_pred -CCCEEEEECCCCCCEEEEEEECCCCCE--EEEEEEE-CCCEEEEEE--ECCCEEEEC-CC-------CCEEEEECCCC-
Q ss_conf -991999991798740346853078511--1123430-799899995--259199997-99-------97776512799-
Q 002615 692 -SGRLTAISVKALPFHTLWLHELEVPAF--ASLCITS-ANRHVICCL--VDGHVVALD-SS-------GSIIWRCRTGG- 756 (900)
Q Consensus 692 -~g~i~~~d~~~~~g~~~w~~~~~~~~~--~s~~~~~-~~~~i~~g~--~~g~i~~~d-~~-------G~~~w~~~~~~- 756 (900)
...+..++..+ ++..-......... ....... ..+.++... .++.+..++ .. ++........+
T Consensus 227 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~ 304 (426)
T d1hzua2 227 NSNKVAVIDSKD--RRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG 304 (426)
T ss_dssp TCSEEEEEETTT--TEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSS
T ss_pred CCCCEEEEECCC--CCEEEEECCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCC
T ss_conf 110000000255--627887505874443420110069877457741578965988522566520330258689866887
Q ss_pred CEECCCCCCCC-CCCEEEEE-------EECCEEEEEECCCCCEEEEEEC----------CCCEECCCCCCCCCCCCCCCC
Q ss_conf 61005632334-89949999-------4289299996889844338824----------993420432232200013445
Q 002615 757 PIFAGPCTSFA-LPSQVLIC-------SRNGSIYSFEQESGNLLWEYSV----------GDPITASAYIDEHLQLKLESC 818 (900)
Q Consensus 757 ~~~~~~~~~~~-~~~~i~~g-------s~dg~i~~~d~~tG~~~w~~~~----------~~~~~~~~~~~~~~~~~~~~~ 818 (900)
.+.+. ... .+..+++. ..++.+..||.++++...+... ...+.... +
T Consensus 305 ~v~~v---~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~-f----------- 369 (426)
T d1hzua2 305 GSLFI---KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPE-Y----------- 369 (426)
T ss_dssp CCCCE---ECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEE-E-----------
T ss_pred CEEEE---ECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCHHCCCCCCCCCEEEEE-E-----------
T ss_conf 63678---74899861888506798802288799998987876708950211025677885189879-9-----------
Q ss_pred CCCCEEEEEE-----CCCCCEEEEEEECC
Q ss_conf 6788099998-----48993999996058
Q 002615 819 LSIDRLVCIC-----TSSGSIHILRVNLD 842 (900)
Q Consensus 819 ~~~~~~i~vg-----~~~G~i~~~d~~~~ 842 (900)
.+++..+|+. ..+|.|.+||.+++
T Consensus 370 SpDGk~i~vs~~~~~~~~~~i~v~D~~T~ 398 (426)
T d1hzua2 370 NKRGDEVWFSVWNGKNDSSALVVVDDKTL 398 (426)
T ss_dssp CSSSSEEEEEECCCTTSCCEEEEEETTTT
T ss_pred CCCCCEEEEEEECCCCCCCEEEEEECCCC
T ss_conf 99999999997248888982999999987
|
| >d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Peptidyl carrier domain domain: Peptidyl carrier protein (PCP), thioester domain species: Bacillus brevis [TaxId: 1393]
Probab=99.30 E-value=1.9e-12 Score=86.57 Aligned_cols=67 Identities=22% Similarity=0.381 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH------CCCCHHHHCCCCHHHHHHHHH
Q ss_conf 3100899999999831039720236898001586659999999991------987102131799899999998
Q 002615 356 TKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALL 422 (900)
Q Consensus 356 ~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~~GgdSl~a~~l~~~l------~~~~~~~~~~~t~~~l~~~l~ 422 (900)
+|.+++|+.++++|+++|+.+.++.+++||++|||||.|++++.+| .+++..+|++||++.||.+|.
T Consensus 3 ~P~~~~E~~l~~i~~~vL~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~~~~l~~~~l~~~pTi~~LA~~i~ 75 (76)
T d2gdwa1 3 APTNAVESKLAEIWERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQYVA 75 (76)
T ss_dssp CCCSHHHHHHHHHHHHHTTSSCCCTTTTSSTTTCTTHHHHHHHHHHHHTTSSCCTTHHHHHSCSHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHC
T ss_conf 9678999999999999939998799989777189738899999999999889988999984999999998864
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.22 E-value=4.3e-08 Score=60.67 Aligned_cols=238 Identities=10% Similarity=0.070 Sum_probs=128.9
Q ss_pred CCEEEEEECCCCEEEEEECCCCCE------EEEEECC-CCE---EECEEEECC---CCEEEEEEECCEEEEEECCCCCE-
Q ss_conf 962999954898099997899818------8898649-922---426167359---98999996489899997789847-
Q 002615 556 SDIYLFVGSHSHKFICADAKRSSV------LWEIKLE-GRI---ECSAAVLAD---FSQVVVGCYKGKIYFLDYLTGDI- 621 (900)
Q Consensus 556 ~~~~i~igs~~g~i~~~d~~tG~~------~w~~~~~-~~~---~~~~~~~~~---~~~i~vg~~dg~l~~~d~~tG~~- 621 (900)
.+.+++.++.|+.++.||..+++. ....... ..+ ........+ ...+..++.||.+..|+...+..
T Consensus 23 ~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~ 102 (393)
T d1sq9a_ 23 CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET 102 (393)
T ss_dssp CSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT
T ss_pred ECCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCE
T ss_conf 69999999799969987898788776540467654204771676667500157998768999948991999982289820
Q ss_pred --EEEEECC--------CCEEEEEEEEC-----CCCEEEEECCCCEEEEEECCCCE---------------EEEEECC--
Q ss_conf --9998219--------91343126747-----99889994479909999878996---------------9984104--
Q 002615 622 --YWTFQTC--------GEVKCQPVVDA-----PRQLIWCGSHDHNLYALDFRNYR---------------CVYKLPC-- 669 (900)
Q Consensus 622 --~w~~~~~--------~~~~~~~~~~~-----~~~~i~~gs~dg~i~~~d~~~g~---------------~~w~~~~-- 669 (900)
.+..... .... ...+.. ....+..++.|+.+..|+..... .......
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (393)
T d1sq9a_ 103 KKVIFEKLDLLDSDMKKHSFW-ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPM 181 (393)
T ss_dssp CCEEEEEECCSCTTGGGSCEE-EEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSS
T ss_pred EEEECCCCCEEEECCCCCCEE-EEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCEECCCCEECCC
T ss_conf 565124563243115789668-9998447886542179998389819998740477534102331032000145100025
Q ss_pred -CCCCCCCCEEECCCCEEEEEECCCCEEEEECCCCCCEEEEEEECC------CCCEEEEEEEECCCEEEEEEECCC---E
Q ss_conf -985434753631598999991799199999179874034685307------851111234307998999952591---9
Q 002615 670 -GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE------VPAFASLCITSANRHVICCLVDGH---V 739 (900)
Q Consensus 670 -~~~~~~~~~~~~~~~~l~v~t~~g~i~~~d~~~~~g~~~w~~~~~------~~~~~s~~~~~~~~~i~~g~~~g~---i 739 (900)
......+..+.+ ++.++.++.+|.+..||..+ ++.+...... .....+..+.+++..++.++.|+. +
T Consensus 182 ~~~~~~~~v~~s~-dg~lasgs~Dg~i~iwd~~~--~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i 258 (393)
T d1sq9a_ 182 TPSQFATSVDISE-RGLIATGFNNGTVQISELST--LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCI 258 (393)
T ss_dssp SSCCCCCEEEECT-TSEEEEECTTSEEEEEETTT--TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEE
T ss_pred CCCCCEEEEEECC-CCEEEEEECCCCEEEEEECC--CCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCEE
T ss_conf 7898678999789-99899993898299986023--32110000111112425638770046653201124289884210
Q ss_pred EEEC-CCCCEEEEECCCC--------------CEECCCCCCCC-CCCEEEEEEECCEEEEEECCCCCEEEEEECCCC
Q ss_conf 9997-9997776512799--------------61005632334-899499994289299996889844338824993
Q 002615 740 VALD-SSGSIIWRCRTGG--------------PIFAGPCTSFA-LPSQVLICSRNGSIYSFEQESGNLLWEYSVGDP 800 (900)
Q Consensus 740 ~~~d-~~G~~~w~~~~~~--------------~~~~~~~~~~~-~~~~i~~gs~dg~i~~~d~~tG~~~w~~~~~~~ 800 (900)
.+|| .+|+.+....... .+.+. ... .+..|+.++.|+.|..||.++|+.+.++..+..
T Consensus 259 ~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l---~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~ 332 (393)
T d1sq9a_ 259 TLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL---SFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD 332 (393)
T ss_dssp EEEETTTCCEEEEECBC--------CCBSBSSCEEEE---EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGG
T ss_pred EECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEE---CCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCC
T ss_conf 0103532134443115666643102320235866600---1389888069877999899999999979999988687
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.22 E-value=4.4e-08 Score=60.62 Aligned_cols=88 Identities=11% Similarity=0.111 Sum_probs=50.5
Q ss_pred CEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEECEEEECCCCEEEEEEECCEEEEEECCCCCEEEEEECCCC----EE
Q ss_conf 62999954898099997899818889864992242616735998999996489899997789847999821991----34
Q 002615 557 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE----VK 632 (900)
Q Consensus 557 ~~~i~igs~~g~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~----~~ 632 (900)
+...|+-...+.|+.+|..+|+.. .+..+..+ .+.....+ +.+++++.+ .++.+|..+|+.......... ..
T Consensus 30 ~~l~wvDi~~~~I~r~d~~~g~~~-~~~~~~~~-~~i~~~~d-g~l~va~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~ 105 (295)
T d2ghsa1 30 GTAWWFNILERELHELHLASGRKT-VHALPFMG-SALAKISD-SKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRS 105 (295)
T ss_dssp TEEEEEEGGGTEEEEEETTTTEEE-EEECSSCE-EEEEEEET-TEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEE
T ss_pred CEEEEEECCCCEEEEEECCCCEEE-EEECCCCC-EEEEEECC-CCEEEEEEC-CCEEEECCCCEEEEEEEEECCCCCCCC
T ss_conf 999999878999999989989599-99899981-79899659-988999737-638950464513578664047876610
Q ss_pred EEEEEECCCCEEEEECC
Q ss_conf 31267479988999447
Q 002615 633 CQPVVDAPRQLIWCGSH 649 (900)
Q Consensus 633 ~~~~~~~~~~~i~~gs~ 649 (900)
....++ ..+.+|+++.
T Consensus 106 nd~~vd-~~G~iw~~~~ 121 (295)
T d2ghsa1 106 NDGRMH-PSGALWIGTM 121 (295)
T ss_dssp EEEEEC-TTSCEEEEEE
T ss_pred EEEEEC-CCCCEEEEEC
T ss_conf 135797-9999988742
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.18 E-value=1.5e-08 Score=63.31 Aligned_cols=248 Identities=11% Similarity=-0.026 Sum_probs=141.9
Q ss_pred CEEEEECCCEEEEEECC----------CCEEEEEECCCCCEEEEEECCCC-------EEECEEEECCCCEEEEEEE-CCE
Q ss_conf 25995189629999548----------98099997899818889864992-------2426167359989999964-898
Q 002615 549 PLVVLKDSDIYLFVGSH----------SHKFICADAKRSSVLWEIKLEGR-------IECSAAVLADFSQVVVGCY-KGK 610 (900)
Q Consensus 549 p~v~~~~~~~~i~igs~----------~g~i~~~d~~tG~~~w~~~~~~~-------~~~~~~~~~~~~~i~vg~~-dg~ 610 (900)
|.+....++..+|+.++ ++.|..||..++++.+....+.. ......++.|+.++++... ++.
T Consensus 68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~ 147 (368)
T d1mdah_ 68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSA 147 (368)
T ss_dssp CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSC
T ss_pred CCCEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEECCCCCCCCEEECCCCCEEEEEECCCCE
T ss_conf 75139899988999755676401035678699998999938306437854210246886405887899899999689985
Q ss_pred EEEEECCCCCEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCEE-EEEECCC----CCCCCCCEEECCCCE
Q ss_conf 99997789847999821991343126747998899944799099998789969-9841049----854347536315989
Q 002615 611 IYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRC-VYKLPCG----GSIFGSPAIDEVHDV 685 (900)
Q Consensus 611 l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~~g~~-~w~~~~~----~~~~~~~~~~~~~~~ 685 (900)
++.||..+++.......+......+ ......+..+.||.+..++...+.. .|..... ......+......+
T Consensus 148 v~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g- 223 (368)
T d1mdah_ 148 AAGLSVPGASDDQLTKSASCFHIHP---GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPG- 223 (368)
T ss_dssp EEEEEETTTEEEEEEECSSCCCCEE---EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTT-
T ss_pred EEEEECCCCCEEEEEECCCCCEECC---CCCCEEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEECCCCCCC-
T ss_conf 9999899893867860467523746---998239999489988999826896266653031113566646601015586-
Q ss_pred EEEEECCCCEEEEECCCCCCEEEEEEECCCC----------CEEEEEEEECCCEEEEEEECC---------CEEEEC-CC
Q ss_conf 9999179919999917987403468530785----------111123430799899995259---------199997-99
Q 002615 686 LYVASTSGRLTAISVKALPFHTLWLHELEVP----------AFASLCITSANRHVICCLVDG---------HVVALD-SS 745 (900)
Q Consensus 686 l~v~t~~g~i~~~d~~~~~g~~~w~~~~~~~----------~~~s~~~~~~~~~i~~g~~~g---------~i~~~d-~~ 745 (900)
.++.+.++.++.++................. ......+..+++.+|+...++ .+..+| .+
T Consensus 224 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t 303 (368)
T d1mdah_ 224 MLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV 303 (368)
T ss_dssp EEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS
T ss_pred EEEEECCCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEECCCCEEEEEECCC
T ss_conf 89993489779996069936997602465430455401278835688717998799983589733405886499998999
Q ss_pred CCEEEEECCCCCEECCCCCCCCCCCEEEEEE-ECCEEEEEECCCCCEEEEEECCCCE
Q ss_conf 9777651279961005632334899499994-2892999968898443388249934
Q 002615 746 GSIIWRCRTGGPIFAGPCTSFALPSQVLICS-RNGSIYSFEQESGNLLWEYSVGDPI 801 (900)
Q Consensus 746 G~~~w~~~~~~~~~~~~~~~~~~~~~i~~gs-~dg~i~~~d~~tG~~~w~~~~~~~~ 801 (900)
++.+.+...+..... ..+..+....+|+.. .++.|+.||..+|+.+-+++++...
T Consensus 304 ~~~~~~~~~~~~~~~-~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P 359 (368)
T d1mdah_ 304 GQTSGPISNGHDSDA-IIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP 359 (368)
T ss_dssp CCEEECCEEEEEECE-EEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCC
T ss_pred CCEEEEECCCCCEEE-EEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCC
T ss_conf 948689558996517-99998999899999489996999989999799998799998
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.11 E-value=2.2e-08 Score=62.44 Aligned_cols=152 Identities=14% Similarity=0.128 Sum_probs=90.4
Q ss_pred CEEEEEEECCEEEEEECCCCC-------------E--EEEEEC---CCCEEEEEEEECCCCEEEEECCCCEEEEEECCCC
Q ss_conf 899999648989999778984-------------7--999821---9913431267479988999447990999987899
Q 002615 600 SQVVVGCYKGKIYFLDYLTGD-------------I--YWTFQT---CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY 661 (900)
Q Consensus 600 ~~i~vg~~dg~l~~~d~~tG~-------------~--~w~~~~---~~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~~g 661 (900)
..+..++.||.+..|+..... . ...... ......+..+.+ ++.+++|+.|+.++.||..++
T Consensus 137 ~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~lasgs~Dg~i~iwd~~~~ 215 (393)
T d1sq9a_ 137 HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RGLIATGFNNGTVQISELSTL 215 (393)
T ss_dssp EEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TSEEEEECTTSEEEEEETTTT
T ss_pred CEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCEECCCCEECCCCCCCCEEEEEECC-CCEEEEEECCCCEEEEEECCC
T ss_conf 1799983898199987404775341023310320001451000257898678999789-998999938982999860233
Q ss_pred EEEEEECCC------CCCCCCCEEECCCCEEEEEECCC---CEEEEECCCCCCEEEEEEEC-------------CCCCEE
Q ss_conf 699841049------85434753631598999991799---19999917987403468530-------------785111
Q 002615 662 RCVYKLPCG------GSIFGSPAIDEVHDVLYVASTSG---RLTAISVKALPFHTLWLHEL-------------EVPAFA 719 (900)
Q Consensus 662 ~~~w~~~~~------~~~~~~~~~~~~~~~l~v~t~~g---~i~~~d~~~~~g~~~w~~~~-------------~~~~~~ 719 (900)
+.+..+... .....+.++.+++..|+.++.++ .+..||.++ |+.+..... +.....
T Consensus 216 ~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~--g~~~~~l~~~~~~~~~~~~~~gH~~~V~ 293 (393)
T d1sq9a_ 216 RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF--GERIGSLSVPTHSSQASLGEFAHSSWVM 293 (393)
T ss_dssp EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT--CCEEEEECBC--------CCBSBSSCEE
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCEEEECCCCC--CEEEEEECCCCCCCCCEEEEECCCCCEE
T ss_conf 21100001111124256387700466532011242898842100103532--1344431156666431023202358666
Q ss_pred EEEEEECCCEEEEEEECCCEEEEC-CCCCEEEEECC
Q ss_conf 123430799899995259199997-99977765127
Q 002615 720 SLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT 754 (900)
Q Consensus 720 s~~~~~~~~~i~~g~~~g~i~~~d-~~G~~~w~~~~ 754 (900)
+..+.+++..++.++.|+.|.+|| .+|+.+..++.
T Consensus 294 ~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~g 329 (393)
T d1sq9a_ 294 SLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNM 329 (393)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EECCCCCCCEEEEECCCCEEEEEECCCCCEEEEECC
T ss_conf 001389888069877999899999999979999988
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.00 E-value=4.1e-07 Score=54.88 Aligned_cols=202 Identities=9% Similarity=0.033 Sum_probs=107.5
Q ss_pred CEEEECCCCEEEE-EEECCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEECCC
Q ss_conf 6167359989999-964898999977898479998219913431267479988999447990999987899699841049
Q 002615 592 SAAVLADFSQVVV-GCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG 670 (900)
Q Consensus 592 ~~~~~~~~~~i~v-g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~~g~~~w~~~~~ 670 (900)
++......+.+|. --..+.|+.+|+++|+.. .+..+..+.+ ..... ++.+|+++.+ +++.+|..+++........
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~~~~~~~-i~~~~-dg~l~va~~~-gl~~~d~~tg~~~~l~~~~ 97 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSA-LAKIS-DSKQLIASDD-GLFLRDTATGVLTLHAELE 97 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEE-EEEEE-TTEEEEEETT-EEEEEETTTCCEEEEECSS
T ss_pred CCEEECCCCEEEEEECCCCEEEEEECCCCEEE-EEECCCCCEE-EEEEC-CCCEEEEEEC-CCEEEECCCCEEEEEEEEE
T ss_conf 87598999999999878999999989989599-9989998179-89965-9988999737-6389504645135786640
Q ss_pred C----CCCCCCEEECCCCEEEEEEC-------CCCEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCEEEEE-EECCC
Q ss_conf 8----54347536315989999917-------991999991798740346853078511112343079989999-52591
Q 002615 671 G----SIFGSPAIDEVHDVLYVAST-------SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICC-LVDGH 738 (900)
Q Consensus 671 ~----~~~~~~~~~~~~~~l~v~t~-------~g~i~~~d~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~g-~~~g~ 738 (900)
. .......+++ .+.+|+++. .+.++.+ .+ |+...... ....-.......+++.+|+. +..+.
T Consensus 98 ~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~--~~--g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~ 171 (295)
T d2ghsa1 98 SDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHV--AK--GKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNR 171 (295)
T ss_dssp TTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEE--ET--TEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCE
T ss_pred CCCCCCCCEEEEECC-CCCEEEEECCCCCCCCCEEEEEE--CC--CCEEEEEE-CCCCCCEEEECCCCCEEEEEECCCCE
T ss_conf 478766101357979-99998874264313333057662--29--96899865-06876402465877668985156632
Q ss_pred EEEEC-C-C-CCE----EEEECCCCCEECCCCCCCCCCCEEEEEEE-CCEEEEEECCCCCEEEEEECCCCEECC
Q ss_conf 99997-9-9-977----76512799610056323348994999942-892999968898443388249934204
Q 002615 739 VVALD-S-S-GSI----IWRCRTGGPIFAGPCTSFALPSQVLICSR-NGSIYSFEQESGNLLWEYSVGDPITAS 804 (900)
Q Consensus 739 i~~~d-~-~-G~~----~w~~~~~~~~~~~~~~~~~~~~~i~~gs~-dg~i~~~d~~tG~~~w~~~~~~~~~~~ 804 (900)
|+.++ . . +.. .......+.......+..+.+|+||++.. .|.|.+|++ +|+++-.+.++....++
T Consensus 172 I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~ 244 (295)
T d2ghsa1 172 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTC 244 (295)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEE
T ss_pred EEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCEEEEEECCCCEEEECC-CCCEEEEECCCCCCEEE
T ss_conf 46764535555324535788416755566632678699998953207884688569-99286686389985279
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.92 E-value=8.9e-07 Score=52.87 Aligned_cols=100 Identities=14% Similarity=0.145 Sum_probs=46.3
Q ss_pred CCEEEEEE-ECCCEEEECCCCCEEEEECCCCCEECCC-CCCCCCCCEEEEEEE--CCEEEEEECCCCCEEEEEECCCCE-
Q ss_conf 99899995-2591999979997776512799610056-323348994999942--892999968898443388249934-
Q 002615 727 NRHVICCL-VDGHVVALDSSGSIIWRCRTGGPIFAGP-CTSFALPSQVLICSR--NGSIYSFEQESGNLLWEYSVGDPI- 801 (900)
Q Consensus 727 ~~~i~~g~-~~g~i~~~d~~G~~~w~~~~~~~~~~~~-~~~~~~~~~i~~gs~--dg~i~~~d~~tG~~~w~~~~~~~~- 801 (900)
++.+|+.. ..+.++.++.+|+.++++...+. +..| .+..+.++.||++.. ++.|..|+ .+|++++++......
T Consensus 167 ~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~-~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~ 244 (279)
T d1q7fa_ 167 KQEIFISDNRAHCVKVFNYEGQYLRQIGGEGI-TNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHA 244 (279)
T ss_dssp SSEEEEEEGGGTEEEEEETTCCEEEEESCTTT-SCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCS
T ss_pred CEEEEEEECCCCCEEEEECCCCEEEEECCCCC-CCCCCCCCCCCCCEEEEEECCCCCEEEEEC-CCCCEEEEEECCCCCC
T ss_conf 00178620135510023047944453011321-148762323147869999789980899999-9999999996888889
Q ss_pred -ECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEE
Q ss_conf -204322322000134456788099998489939999960
Q 002615 802 -TASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 840 (900)
Q Consensus 802 -~~~~~~~~~~~~~~~~~~~~~~~i~vg~~~G~i~~~d~~ 840 (900)
.....++. ++.++++..++.|.+|+.+
T Consensus 245 ~p~~vav~~------------dG~l~V~~~n~~v~~fr~~ 272 (279)
T d1q7fa_ 245 QCFDVALMD------------DGSVVLASKDYRLYIYRYV 272 (279)
T ss_dssp CEEEEEEET------------TTEEEEEETTTEEEEEECS
T ss_pred CEEEEEEEC------------CCCEEEEECCCEEEEEEEE
T ss_conf 883799908------------9919999189969998722
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.86 E-value=1.4e-06 Score=51.69 Aligned_cols=247 Identities=11% Similarity=0.099 Sum_probs=111.6
Q ss_pred CCEEEEEECC--------CCEEEEEECCCCCEEEEEECC-C---CEEECEEEECCCCEEEEEEECCEEEEEECCCCCEEE
Q ss_conf 9629999548--------980999978998188898649-9---224261673599899999648989999778984799
Q 002615 556 SDIYLFVGSH--------SHKFICADAKRSSVLWEIKLE-G---RIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYW 623 (900)
Q Consensus 556 ~~~~i~igs~--------~g~i~~~d~~tG~~~w~~~~~-~---~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w 623 (900)
.++.+|+.+. +++|+.+|+.+++........ . ..-....+..+++.+|+......++.++...+...
T Consensus 27 ~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~- 105 (314)
T d1pjxa_ 27 KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEE- 105 (314)
T ss_dssp TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEE-
T ss_pred CCCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEE-
T ss_conf 9999999987540234529999999899995999977765567885306999079998999977983999947774799-
Q ss_pred EEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCEEECCCCEEEEEECCCCEEEEECCCC
Q ss_conf 98219913431267479988999447990999987899699841049854347536315989999917991999991798
Q 002615 624 TFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKAL 703 (900)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~i~~~d~~~~ 703 (900)
.......-. +.-.+ +-+.+. .+|.+|.=|.......|. .... .....+.+|.-+.+|.+..+.
T Consensus 106 ~~~~~~~g~--~~~~p--ndl~~d-~~G~lyvtd~~~~~~~~~------~~~~--~~~~~G~v~~~~~dg~~~~~~---- 168 (314)
T d1pjxa_ 106 IAKKDSEGR--RMQGC--NDCAFD-YEGNLWITAPAGEVAPAD------YTRS--MQEKFGSIYCFTTDGQMIQVD---- 168 (314)
T ss_dssp CCSBCTTSC--BCBCC--CEEEEC-TTSCEEEEECBCBCTTSC------CCBT--TSSSCEEEEEECTTSCEEEEE----
T ss_pred EEECCCCCC--CCCCC--CEEEEC-CCCCEEEECCCCCCCCCC------CCCE--ECCCCCEEEEEEECCCEEEEE----
T ss_conf 973343245--45787--278988-899899914866754320------1100--026884389995257403750----
Q ss_pred CCEEEEEEECCCCCEEEEEEEECCC----EEEEE-EECCCEEEEC--CCCCEEEE---ECCCCCEECCC-CCCCCCCCEE
Q ss_conf 7403468530785111123430799----89999-5259199997--99977765---12799610056-3233489949
Q 002615 704 PFHTLWLHELEVPAFASLCITSANR----HVICC-LVDGHVVALD--SSGSIIWR---CRTGGPIFAGP-CTSFALPSQV 772 (900)
Q Consensus 704 ~g~~~w~~~~~~~~~~s~~~~~~~~----~i~~g-~~~g~i~~~d--~~G~~~w~---~~~~~~~~~~~-~~~~~~~~~i 772 (900)
.....+ ...++..+++ .+|++ +..+.|+.|+ .+|.+.+. ..........| -+..+.+++|
T Consensus 169 -------~~~~~p--NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gnl 239 (314)
T d1pjxa_ 169 -------TAFQFP--NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNL 239 (314)
T ss_dssp -------EEESSE--EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCE
T ss_pred -------CCCCEE--EEEEECCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCE
T ss_conf -------785322--13699788776303799986024311776116765430156899713356664102578347857
Q ss_pred EEEEE-CCEEEEEECCCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCEEEEEEC-CCCCEEEEEEE
Q ss_conf 99942-8929999688984433882499342043223220001344567880999984-89939999960
Q 002615 773 LICSR-NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICT-SSGSIHILRVN 840 (900)
Q Consensus 773 ~~gs~-dg~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vg~-~~G~i~~~d~~ 840 (900)
|++.. .+.|++|+++.|+++-.+..+....+..++.. +++.+|+.+ .+|.|+.++..
T Consensus 240 yVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~-----------d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 240 LVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKP-----------QTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECT-----------TSSEEEEEETTTTEEEEEECS
T ss_pred EEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEEC-----------CCCEEEEEECCCCCEEEEECC
T ss_conf 99982799999996999979999979999878999928-----------989999998789919999789
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.83 E-value=1.7e-06 Score=51.14 Aligned_cols=226 Identities=12% Similarity=0.104 Sum_probs=116.9
Q ss_pred CCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCE------EECEEEECCCCEEEEEE--ECCEEEEEECCCCCEEEEE
Q ss_conf 8962999954-8980999978998188898649922------42616735998999996--4898999977898479998
Q 002615 555 DSDIYLFVGS-HSHKFICADAKRSSVLWEIKLEGRI------ECSAAVLADFSQVVVGC--YKGKIYFLDYLTGDIYWTF 625 (900)
Q Consensus 555 ~~~~~i~igs-~~g~i~~~d~~tG~~~w~~~~~~~~------~~~~~~~~~~~~i~vg~--~dg~l~~~d~~tG~~~w~~ 625 (900)
+.++.||+.. .++.|..||.+ |+.++.+...... .....+..+.+..++.+ .++.+..++ .+|+....+
T Consensus 31 d~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~g~~~~~~ 108 (279)
T d1q7fa_ 31 NAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKF 108 (279)
T ss_dssp CTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEE
T ss_pred CCCCCEEEEECCCCEEEEEECC-CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCC-CCCCCEEEC
T ss_conf 4999899997998989999699-99999816657886642266300012344552000047753100000-256302403
Q ss_pred ECCCC-EEEEEEEECCCCEEEEE-CCCCEEEEEECCCCEEEEEECCCCC--CCCCCEEECCCCEEEEEE-CCCCEEEEEC
Q ss_conf 21991-34312674799889994-4799099998789969984104985--434753631598999991-7991999991
Q 002615 626 QTCGE-VKCQPVVDAPRQLIWCG-SHDHNLYALDFRNYRCVYKLPCGGS--IFGSPAIDEVHDVLYVAS-TSGRLTAISV 700 (900)
Q Consensus 626 ~~~~~-~~~~~~~~~~~~~i~~g-s~dg~i~~~d~~~g~~~w~~~~~~~--~~~~~~~~~~~~~l~v~t-~~g~i~~~d~ 700 (900)
..... ......++. .+.+|+. ...+.+..++. +|+.+..+..... .....+++. .+.+|++. ..+.++.++.
T Consensus 109 ~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~-~g~i~v~d~~~~~V~~~d~ 185 (279)
T d1q7fa_ 109 GATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHCVKVFNY 185 (279)
T ss_dssp CTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEET
T ss_pred CCCCCCCCCEECCCC-CCCEEEEEECCCEEEEECC-CCCEEECCCCCCCCCCCCEEEECC-CEEEEEEECCCCCEEEEEC
T ss_conf 888642542000014-7847999632632567626-875010022001025662432012-0017862013551002304
Q ss_pred CCCCCEEEEEEECCCCCE--EEEEEEECCCEEEEEEE--CCCEEEECCCCCEEEEECCCCCEECCCCCCCCCCCEEEEEE
Q ss_conf 798740346853078511--11234307998999952--59199997999777651279961005632334899499994
Q 002615 701 KALPFHTLWLHELEVPAF--ASLCITSANRHVICCLV--DGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICS 776 (900)
Q Consensus 701 ~~~~g~~~w~~~~~~~~~--~s~~~~~~~~~i~~g~~--~g~i~~~d~~G~~~w~~~~~~~~~~~~~~~~~~~~~i~~gs 776 (900)
+ |+.+++........ ...++. .++.+|++.. +..|..|+.+|+.++.+...........+....++.+|+..
T Consensus 186 ~---G~~~~~~g~~g~~~~P~giavD-~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~ 261 (279)
T d1q7fa_ 186 E---GQYLRQIGGEGITNYPIGVGIN-SNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLAS 261 (279)
T ss_dssp T---CCEEEEESCTTTSCSEEEEEEC-TTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEEE
T ss_pred C---CCEEEEECCCCCCCCCCCCCCC-CCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEE
T ss_conf 7---9444530113211487623231-47869999789980899999999999999688888988379990899199991
Q ss_pred ECCEEEEEECCCC
Q ss_conf 2892999968898
Q 002615 777 RNGSIYSFEQESG 789 (900)
Q Consensus 777 ~dg~i~~~d~~tG 789 (900)
.++.|..|.....
T Consensus 262 ~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 262 KDYRLYIYRYVQL 274 (279)
T ss_dssp TTTEEEEEECSCC
T ss_pred CCCEEEEEEEEEE
T ss_conf 8996999872203
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.74 E-value=3.5e-06 Score=49.32 Aligned_cols=92 Identities=9% Similarity=0.027 Sum_probs=46.0
Q ss_pred CCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCEEECEEEECCCCEEEEEEE-----CCEEEEEECCCCCEEEEEECCC
Q ss_conf 962999954-8980999978998188898649922426167359989999964-----8989999778984799982199
Q 002615 556 SDIYLFVGS-HSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-----KGKIYFLDYLTGDIYWTFQTCG 629 (900)
Q Consensus 556 ~~~~i~igs-~~g~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~-----dg~l~~~d~~tG~~~w~~~~~~ 629 (900)
.++.||+.. ..+.|+.+|+.+++................+..++ .+|+... .+.++.++..++..........
T Consensus 49 ~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG-~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 127 (319)
T d2dg1a1 49 RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS 127 (319)
T ss_dssp TTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSS
T ss_pred CCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCC-CEEEEECCCCCCCEEEEEECCCCCEEEEECCCCC
T ss_conf 999999997799999999899995999994899870389999999-9999956897311049987389963644426777
Q ss_pred C-E-EEEEEEECCCCEEEEECC
Q ss_conf 1-3-431267479988999447
Q 002615 630 E-V-KCQPVVDAPRQLIWCGSH 649 (900)
Q Consensus 630 ~-~-~~~~~~~~~~~~i~~gs~ 649 (900)
. . ..-..++ .++.+|++..
T Consensus 128 ~~~~~nd~~~d-~~G~l~vtd~ 148 (319)
T d2dg1a1 128 TAYCIDDMVFD-SKGGFYFTDF 148 (319)
T ss_dssp SCCCEEEEEEC-TTSCEEEEEC
T ss_pred CCCCCCCEEEE-ECCCEEECCC
T ss_conf 55587522677-3065320013
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.70 E-value=4.8e-06 Score=48.55 Aligned_cols=145 Identities=14% Similarity=0.136 Sum_probs=86.9
Q ss_pred CEEEEEEC-CCCEEEEEECCCCC---EEEEEECCCCEEECEEEECCCCEEEEEEE-CCEEEEEECCCCC--EE-EEEECC
Q ss_conf 62999954-89809999789981---88898649922426167359989999964-8989999778984--79-998219
Q 002615 557 DIYLFVGS-HSHKFICADAKRSS---VLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGD--IY-WTFQTC 628 (900)
Q Consensus 557 ~~~i~igs-~~g~i~~~d~~tG~---~~w~~~~~~~~~~~~~~~~~~~~i~vg~~-dg~l~~~d~~tG~--~~-w~~~~~ 628 (900)
+..||+.+ .++.|+.||.++.. .+.....++.+ ....+++|+.++|+++. ++.++.|+...+. .. ......
T Consensus 3 ~~~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v-~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~ 81 (333)
T d1ri6a_ 3 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQV-QPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL 81 (333)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCC-CCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCE-EEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCC
T ss_conf 3599998789993899998399976999997579988-689995897999999778996999999689870798530136
Q ss_pred CCEEEEEEEECCCCEEEEECC-CCEEEEEECCCCEEEEEECC--CCCCCCCCEEECCCCEEEEEEC-CCCEEEEECCC
Q ss_conf 913431267479988999447-99099998789969984104--9854347536315989999917-99199999179
Q 002615 629 GEVKCQPVVDAPRQLIWCGSH-DHNLYALDFRNYRCVYKLPC--GGSIFGSPAIDEVHDVLYVAST-SGRLTAISVKA 702 (900)
Q Consensus 629 ~~~~~~~~~~~~~~~i~~gs~-dg~i~~~d~~~g~~~w~~~~--~~~~~~~~~~~~~~~~l~v~t~-~g~i~~~d~~~ 702 (900)
........+.+++..+++++. ++.+..++............ .........+.+++..++++.. ...+..++..+
T Consensus 82 ~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~ 159 (333)
T d1ri6a_ 82 PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD 159 (333)
T ss_dssp SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CCCCEEEEECCCCCEEEECCCCCCCEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCEEEECCCCCCCEEEEEEECC
T ss_conf 998549999599988742056888302200111000000100377853149886301013102565542056897326
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.63 E-value=7.8e-06 Score=47.26 Aligned_cols=72 Identities=10% Similarity=0.027 Sum_probs=37.2
Q ss_pred CEEEECCCCEEEEEEE--------CCEEEEEECCCCCEEEEEEC-CC---CEEEEEEEECCCCEEEEECCCCEEEEEECC
Q ss_conf 6167359989999964--------89899997789847999821-99---134312674799889994479909999878
Q 002615 592 SAAVLADFSQVVVGCY--------KGKIYFLDYLTGDIYWTFQT-CG---EVKCQPVVDAPRQLIWCGSHDHNLYALDFR 659 (900)
Q Consensus 592 ~~~~~~~~~~i~vg~~--------dg~l~~~d~~tG~~~w~~~~-~~---~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~ 659 (900)
.+++..++ .+|+.+. +|.|+.+|+.++........ .. .......++.+++.+|++...+.+..++.+
T Consensus 22 Gpa~d~dG-~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~ 100 (314)
T d1pjxa_ 22 GPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD 100 (314)
T ss_dssp EEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT
T ss_pred EEEEECCC-CEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECC
T ss_conf 73996999-99999875402345299999998999959999777655678853069990799989999779839999477
Q ss_pred CCEEE
Q ss_conf 99699
Q 002615 660 NYRCV 664 (900)
Q Consensus 660 ~g~~~ 664 (900)
.+...
T Consensus 101 g~~~~ 105 (314)
T d1pjxa_ 101 GTFEE 105 (314)
T ss_dssp SCEEE
T ss_pred CCEEE
T ss_conf 74799
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.58 E-value=1e-05 Score=46.51 Aligned_cols=106 Identities=13% Similarity=0.182 Sum_probs=44.6
Q ss_pred ECCCEEEEEECC-CCEEEEEECCCCCE----EEEEECCCCEEECEEEECCCCEEEEEEE-CCEEEEEECCCCCEEEEEEC
Q ss_conf 189629999548-98099997899818----8898649922426167359989999964-89899997789847999821
Q 002615 554 KDSDIYLFVGSH-SHKFICADAKRSSV----LWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQT 627 (900)
Q Consensus 554 ~~~~~~i~igs~-~g~i~~~d~~tG~~----~w~~~~~~~~~~~~~~~~~~~~i~vg~~-dg~l~~~d~~tG~~~w~~~~ 627 (900)
+.++.+||++.. ++.|..|+..++.. .......... ....+++++.+++++++ ++.+..++..+.........
T Consensus 45 spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p-~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~ 123 (333)
T d1ri6a_ 45 SPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL-THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV 123 (333)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC-SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE
T ss_pred ECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCC-EEEEECCCCCEEEECCCCCCCEEEECCCCCCCEECCCC
T ss_conf 58979999997789969999996898707985301369985-49999599988742056888302200111000000100
Q ss_pred --CCCEEEEEEEECCCCEEEEEC-CCCEEEEEECCC
Q ss_conf --991343126747998899944-799099998789
Q 002615 628 --CGEVKCQPVVDAPRQLIWCGS-HDHNLYALDFRN 660 (900)
Q Consensus 628 --~~~~~~~~~~~~~~~~i~~gs-~dg~i~~~d~~~ 660 (900)
+........+.+++..++++. .+..+..++..+
T Consensus 124 ~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~ 159 (333)
T d1ri6a_ 124 VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD 159 (333)
T ss_dssp ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CCCCCCCEEEEEEECCEEEECCCCCCCEEEEEEECC
T ss_conf 377853149886301013102565542056897326
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.49 E-value=1.8e-05 Score=45.12 Aligned_cols=202 Identities=9% Similarity=0.093 Sum_probs=100.4
Q ss_pred CEEEECCCCEEEE-EEECCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCCEEEEECC-----CCEEEEEECCCCEEEE
Q ss_conf 6167359989999-964898999977898479998219913431267479988999447-----9909999878996998
Q 002615 592 SAAVLADFSQVVV-GCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH-----DHNLYALDFRNYRCVY 665 (900)
Q Consensus 592 ~~~~~~~~~~i~v-g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~-----dg~i~~~d~~~g~~~w 665 (900)
.+++..++. +|+ -..++.|+.+++.+++................+.+ ++.+|+... .+.+..++..++....
T Consensus 44 G~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~~~~ 121 (319)
T d2dg1a1 44 GLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQD 121 (319)
T ss_dssp EEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred ECEECCCCC-EEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECC-CCCEEEEECCCCCCCEEEEEECCCCCEEEE
T ss_conf 078999999-999977999999998999959999948998703899999-999999956897311049987389963644
Q ss_pred EECCCCC--CCCCCEEECCCCEEEEEECC-------CCEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCEEEEEE-E
Q ss_conf 4104985--43475363159899999179-------919999917987403468530785111123430799899995-2
Q 002615 666 KLPCGGS--IFGSPAIDEVHDVLYVASTS-------GRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCL-V 735 (900)
Q Consensus 666 ~~~~~~~--~~~~~~~~~~~~~l~v~t~~-------g~i~~~d~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~g~-~ 735 (900)
....... ......++. .+.+|+++.. +.++.++.+. +...........-....+..+++.+|++. .
T Consensus 122 ~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg---~~~~~~~~~~~~pnGia~s~dg~~lyvad~~ 197 (319)
T d2dg1a1 122 IIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDF---RTVTPIIQNISVANGIALSTDEKVLWVTETT 197 (319)
T ss_dssp EECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTS---CCEEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred ECCCCCCCCCCCCEEEEE-CCCEEECCCCCCCCCCCCEEEEEECCC---CEEEEEEECCCEEEEEEECCCCCEEEEECCC
T ss_conf 426777555875226773-065320013540025742157884166---3357886123301000101222127874046
Q ss_pred CCCEEEEC--CCCCEEEEECCC----CCEECCC-CCCCCCCCEEEEEEE-CCEEEEEECCCCCEEEEEECCCC
Q ss_conf 59199997--999777651279----9610056-323348994999942-89299996889844338824993
Q 002615 736 DGHVVALD--SSGSIIWRCRTG----GPIFAGP-CTSFALPSQVLICSR-NGSIYSFEQESGNLLWEYSVGDP 800 (900)
Q Consensus 736 ~g~i~~~d--~~G~~~w~~~~~----~~~~~~~-~~~~~~~~~i~~gs~-dg~i~~~d~~tG~~~w~~~~~~~ 800 (900)
.+.|+.++ .+|......... ......| -+..+.+++||++.. ++.|.+|++ +|+++.++.++..
T Consensus 198 ~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~ 269 (319)
T d2dg1a1 198 ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR 269 (319)
T ss_dssp GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG
T ss_pred CCCEEEEEECCCCCEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEECC-CCCEEEEEECCCC
T ss_conf 89147999769983620246333312577641036417389999999848998999979-9959889968875
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.42 E-value=2.7e-05 Score=44.05 Aligned_cols=105 Identities=11% Similarity=0.088 Sum_probs=58.3
Q ss_pred CCEEEEEECC-CCEEEEEECCCCCEEEEEECCCCEEECEEEECCCCEEEEEE-ECCEEEEEECC--CCCEEEEEECCCC-
Q ss_conf 9629999548-98099997899818889864992242616735998999996-48989999778--9847999821991-
Q 002615 556 SDIYLFVGSH-SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGC-YKGKIYFLDYL--TGDIYWTFQTCGE- 630 (900)
Q Consensus 556 ~~~~i~igs~-~g~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~-~dg~l~~~d~~--tG~~~w~~~~~~~- 630 (900)
.+++||+... ++.|+.+|.. |+........... ....+..++. +|+.. .++.++.++.. .+...+.......
T Consensus 37 pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~~~~~~-~gla~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (302)
T d2p4oa1 37 PDGTIFVTNHEVGEIVSITPD-GNQQIHATVEGKV-SGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVETLLTLPDAI 113 (302)
T ss_dssp TTSCEEEEETTTTEEEEECTT-CCEEEEEECSSEE-EEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEEEEECTTCS
T ss_pred CCCCEEEEECCCCEEEEEECC-CCEEEEECCCCCC-CEEEECCCCC-EEEEECCCCEEEEEEECCCCCCEEECCCCCCCC
T ss_conf 998899996889989999089-9889997179985-3689867788-699832895378887101111012102357863
Q ss_pred EEEEEEEECCCCEEEEE-CCCCEEEEEECCCCEEE
Q ss_conf 34312674799889994-47990999987899699
Q 002615 631 VKCQPVVDAPRQLIWCG-SHDHNLYALDFRNYRCV 664 (900)
Q Consensus 631 ~~~~~~~~~~~~~i~~g-s~dg~i~~~d~~~g~~~ 664 (900)
......+. .++.+|++ +.++.++.++..++...
T Consensus 114 ~~n~i~~~-~~g~~~v~~~~~~~i~~~~~~~~~~~ 147 (302)
T d2p4oa1 114 FLNGITPL-SDTQYLTADSYRGAIWLIDVVQPSGS 147 (302)
T ss_dssp CEEEEEES-SSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCEEEEC-CCCCEEEECCCCCCCEEEECCCCCCE
T ss_conf 22166771-57978750356554102421687303
|
| >d1nq4a_ a.28.1.1 (A:) Oxytetracycline polyketide synthase acyl carrier {Streptomyces rimosus [TaxId: 1927]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Oxytetracycline polyketide synthase acyl carrier species: Streptomyces rimosus [TaxId: 1927]
Probab=98.41 E-value=2.5e-07 Score=56.17 Aligned_cols=69 Identities=19% Similarity=0.193 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHH------CCCCHHHHCCCCHHHHHHHHHHHC
Q ss_conf 1008999999998310397--20236898001586659999999991------987102131799899999998512
Q 002615 357 KASDLLQVIRKAFGHALMV--EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 425 (900)
Q Consensus 357 ~~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff~~GgdSl~a~~l~~~l------~~~~~~~~~~~t~~~l~~~l~~~~ 425 (900)
..+++.+.+++++++.+++ ..+..+.+|+++|+|||.+++|..+| +++...+|.+||++.|+.++..+.
T Consensus 5 t~d~l~~~lre~~~~~~~~~~~~i~~d~~f~dlG~DSl~~~el~~~le~~~gv~l~~~~~~~~~Ti~~l~~~l~~~l 81 (95)
T d1nq4a_ 5 TLSDLLTLLRECAGEEESIDLGGDVEDVAFDALGYDSLALLNTVGRIERDYGVQLGDDAVEKATTPRALIEMTNASL 81 (95)
T ss_dssp CHHHHHHHHHHHHTCSSTTCSCSCCSSSCHHHHTCCSHHHHHHHHHHHHHTCCCSCTTHHHHCCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHC
T ss_conf 79999999999986771888111336889988198498999999999987457778999953899999999999755
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.37 E-value=3.6e-05 Score=43.32 Aligned_cols=67 Identities=19% Similarity=0.127 Sum_probs=29.2
Q ss_pred CCCEEEEECCCEEEEEEC--CCCEEEEEECCCCCEEEEEECCC-CEEECEEEECCCCEEEEEEECCEEEEEE
Q ss_conf 562599518962999954--89809999789981888986499-2242616735998999996489899997
Q 002615 547 ASPLVVLKDSDIYLFVGS--HSHKFICADAKRSSVLWEIKLEG-RIECSAAVLADFSQVVVGCYKGKIYFLD 615 (900)
Q Consensus 547 ~sp~v~~~~~~~~i~igs--~~g~i~~~d~~tG~~~w~~~~~~-~~~~~~~~~~~~~~i~vg~~dg~l~~~d 615 (900)
.+|.-+.-+.++.+|+.+ ..+.+..++..+....+ ..... ......++..++ .+|+....+.+..+.
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~p~gvav~~~g-~i~v~d~~~~~i~~~ 83 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-LPFNGLYQPQGLAVDGAG-TVYVTDFNNRVVTLA 83 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEE-CCCCSCCSCCCEEECTTC-CEEEEETTTEEEEEC
T ss_pred CCCCEEEECCCCCEEEEECCCCCEEEEECCCCCEEEE-ECCCCCCCCEEEEECCCC-CEEEEEEEECEEEEE
T ss_conf 9878899969999999971899889999389966897-436986684089993899-889863100003554
|
| >d1vkua_ a.28.1.1 (A:) Acyl carrier protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Thermotoga maritima [TaxId: 2336]
Probab=98.36 E-value=5e-07 Score=54.36 Aligned_cols=69 Identities=16% Similarity=0.140 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHH------CCCCHHHHCCCCHHHHHHHHHHHC
Q ss_conf 1008999999998310397--20236898001586659999999991------987102131799899999998512
Q 002615 357 KASDLLQVIRKAFGHALMV--EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 425 (900)
Q Consensus 357 ~~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff~~GgdSl~a~~l~~~l------~~~~~~~~~~~t~~~l~~~l~~~~ 425 (900)
..+++.+.++++++++|+. .++.++.+|+++|+|||.++++...+ .++...++.++|+..|+.++..+.
T Consensus 5 ~~~~i~~~l~~iv~~~l~~~~~~i~~~~~~~dlG~DSl~~v~l~~~ie~~f~i~i~~~~~~~~~Tv~~l~~~i~~~~ 81 (85)
T d1vkua_ 5 ERKKLIAKFVEIASEKMGKDLETVDEENTFKELGFDSIDVIDLVMFFEDEFALRIEDEEISKIRKVKDLIDIVIKKL 81 (85)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCSCCTTSBTTTTTCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999999999887889988799998888658546899999999978068879999988178999999999987
|
| >d2af8a_ a.28.1.1 (A:) Actinorhodin polyketide synthase acyl carrier protein, ACT ACP {Streptomyces coelicolor, A3(2) [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Actinorhodin polyketide synthase acyl carrier protein, ACT ACP species: Streptomyces coelicolor, A3(2) [TaxId: 1902]
Probab=98.35 E-value=3.3e-07 Score=55.39 Aligned_cols=69 Identities=19% Similarity=0.128 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHH------CCCCHHHHCCCCHHHHHHHHHHHC
Q ss_conf 1008999999998310397--20236898001586659999999991------987102131799899999998512
Q 002615 357 KASDLLQVIRKAFGHALMV--EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 425 (900)
Q Consensus 357 ~~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff~~GgdSl~a~~l~~~l------~~~~~~~~~~~t~~~l~~~l~~~~ 425 (900)
..+++.+.+++.++..++. +++..+.+|+++|+|||.++++...+ +++...+|.+||++.|+.++..+.
T Consensus 6 t~d~l~~~l~e~~~~~~g~~~~~i~~d~~f~dlG~DSl~~~~l~~~l~~~~g~~l~~~~~~~~~Tv~~l~~~i~~~l 82 (86)
T d2af8a_ 6 TTDDLRRALVECAGETDGTDLSGDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLINGAL 82 (86)
T ss_dssp CHHHHHHHHHHTTCCCSCCCCSSCSCSSSHHHHTCSSHHHHHHHHHHHHHHTCCCCCSTTTTCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHH
T ss_conf 59999999999976301789320446889989199789999999999998746767989971999999999999876
|
| >d1klpa_ a.28.1.1 (A:) Acyl carrier protein {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.32 E-value=7.3e-07 Score=53.39 Aligned_cols=69 Identities=12% Similarity=0.155 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHHHCCCCCC--CCCCCCCCC-CCCCCHHHHHHHHHHH------CCCCHHHHCCCCHHHHHHHHHHHC
Q ss_conf 10089999999983103972--023689800-1586659999999991------987102131799899999998512
Q 002615 357 KASDLLQVIRKAFGHALMVE--EVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 425 (900)
Q Consensus 357 ~~~~~~~~l~~~~~~~l~~~--~i~~~~~Ff-~~GgdSl~a~~l~~~l------~~~~~~~~~~~t~~~l~~~l~~~~ 425 (900)
..+++.+.++++++++|+++ ++..+.+|+ ++|+|||.+++|...| .++...++.++|+..|+.+|....
T Consensus 4 t~~~i~~~l~~iv~~~l~~~~~~i~~~~~~~~dlG~DSl~~~~l~~~le~~f~i~i~~~~~~~~~Tv~~l~~~l~~~~ 81 (115)
T d1klpa_ 4 TQEEIIAGIAEIIEEVTGIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDLAGLRTVGDVVAYIQKLE 81 (115)
T ss_dssp CHHHHHHHHHHHHHHHTCCCTTTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTCCCCCHHHHTTCCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999999999999978890006864004553165360999999999999889999999986725999999999971
|
| >d2jq4a1 a.28.1.1 (A:1-83) Hypothetical protein Atu2571 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Hypothetical protein Atu2571 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.30 E-value=4.6e-07 Score=54.58 Aligned_cols=64 Identities=14% Similarity=0.186 Sum_probs=50.0
Q ss_pred HHHHHHHHHCCC----CCCCCCCCCCCCCCCCCHHHHHHHHHHH------CCCCHHHHC--CCCHHHHHHHHHHHC
Q ss_conf 999999983103----9720236898001586659999999991------987102131--799899999998512
Q 002615 362 LQVIRKAFGHAL----MVEEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYN--FPTPSKLEIALLEKK 425 (900)
Q Consensus 362 ~~~l~~~~~~~l----~~~~i~~~~~Ff~~GgdSl~a~~l~~~l------~~~~~~~~~--~~t~~~l~~~l~~~~ 425 (900)
++.+++++++++ ....++++++||++|+|||.+++|...| +++...++. +||+..|+.++....
T Consensus 2 ~e~i~~il~~~~~l~~~~~~i~~~~~f~dlG~DSl~~~~l~~~le~~f~v~i~~~~l~~~~~~Ti~~la~~i~~~~ 77 (83)
T d2jq4a1 2 NATIREILAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFPDNLLNRKSFASIKAIEDTVKLIL 77 (83)
T ss_dssp HHHHHHHHHHTSCCSSCGGGCCTTSCGGGGTCCHHHHHHHHHHHHHHHSCCCCHHHHSSGGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7899999999985689998859997778874740899999999999988988999999998864899999999987
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.28 E-value=6.2e-05 Score=41.94 Aligned_cols=197 Identities=10% Similarity=-0.029 Sum_probs=94.9
Q ss_pred CEEEECCCCEEEEEEECCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCCEEEEE-CCCCEEEEEECC--CCEEEEEEC
Q ss_conf 61673599899999648989999778984799982199134312674799889994-479909999878--996998410
Q 002615 592 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCG-SHDHNLYALDFR--NYRCVYKLP 668 (900)
Q Consensus 592 ~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~g-s~dg~i~~~d~~--~g~~~w~~~ 668 (900)
.+++..++..++....++.|+.++ .+|+............ ...++++ +.+|+. ..++.++.++.. .+...+...
T Consensus 32 ~iAv~pdG~l~vt~~~~~~I~~i~-p~g~~~~~~~~~~~~~-gla~~~d-G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (302)
T d2p4oa1 32 NLASAPDGTIFVTNHEVGEIVSIT-PDGNQQIHATVEGKVS-GLAFTSN-GDLVATGWNADSIPVVSLVKSDGTVETLLT 108 (302)
T ss_dssp EEEECTTSCEEEEETTTTEEEEEC-TTCCEEEEEECSSEEE-EEEECTT-SCEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred CEEECCCCCEEEEECCCCEEEEEE-CCCCEEEEECCCCCCC-EEEECCC-CCEEEEECCCCEEEEEEECCCCCCEEECCC
T ss_conf 877999988999968899899990-8998899971799853-6898677-886998328953788871011110121023
Q ss_pred CC-CCCCCCCEEECCCCEEEEEE-CCCCEEEEECCCCCCEE-EEEEECC-CC------CEEEEEEEECCCEEEEE-EECC
Q ss_conf 49-85434753631598999991-79919999917987403-4685307-85------11112343079989999-5259
Q 002615 669 CG-GSIFGSPAIDEVHDVLYVAS-TSGRLTAISVKALPFHT-LWLHELE-VP------AFASLCITSANRHVICC-LVDG 737 (900)
Q Consensus 669 ~~-~~~~~~~~~~~~~~~l~v~t-~~g~i~~~d~~~~~g~~-~w~~~~~-~~------~~~s~~~~~~~~~i~~g-~~~g 737 (900)
.. .......+... ++.+|++. ..+.++.++... +.. +|..... .. ......+..+++.+|++ +..+
T Consensus 109 ~~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~ 185 (302)
T d2p4oa1 109 LPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQ--PSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKM 185 (302)
T ss_dssp CTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTT--TEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTT
T ss_pred CCCCCCCCEEEECC-CCCEEEECCCCCCCEEEECCC--CCCEEEECCCCCCEEECCCCCCCCCCCCCCCCCEEEECCCCC
T ss_conf 57863221667715-797875035655410242168--730367518864014315763224320116983044037887
Q ss_pred CEEEEC-CCCCEEEEECCCCCEECCCCCCCCCCCEEEEEEE-CCEEEEEECCCCCEEEEE
Q ss_conf 199997-9997776512799610056323348994999942-892999968898443388
Q 002615 738 HVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSR-NGSIYSFEQESGNLLWEY 795 (900)
Q Consensus 738 ~i~~~d-~~G~~~w~~~~~~~~~~~~~~~~~~~~~i~~gs~-dg~i~~~d~~tG~~~w~~ 795 (900)
.++.++ ....................+..+.++.+|++.. ++.|..++++ |+.....
T Consensus 186 ~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~ 244 (302)
T d2p4oa1 186 LLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIA 244 (302)
T ss_dssp EEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEE
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCEEEECCC-CCEEEEE
T ss_conf 6986344333323453101589987523787999999997489918998789-9789999
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.24 E-value=7.5e-05 Score=41.42 Aligned_cols=182 Identities=9% Similarity=-0.034 Sum_probs=94.4
Q ss_pred CCEEEEEEC-CCCEEEEEECCCCCEEEEEECCC-CEEECEEEECCCCEEEEEEE--C-----------------CEEEEE
Q ss_conf 962999954-89809999789981888986499-22426167359989999964--8-----------------989999
Q 002615 556 SDIYLFVGS-HSHKFICADAKRSSVLWEIKLEG-RIECSAAVLADFSQVVVGCY--K-----------------GKIYFL 614 (900)
Q Consensus 556 ~~~~i~igs-~~g~i~~~d~~tG~~~w~~~~~~-~~~~~~~~~~~~~~i~vg~~--d-----------------g~l~~~ 614 (900)
++.++|+.. .+.+|..+|+.+++..-....+. .-.....++.++...|+.+. + ..+..+
T Consensus 82 DGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~i 161 (441)
T d1qnia2 82 DGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAI 161 (441)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEE
T ss_pred CCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 88889997389997999988778475579567887864348705699899995667754436766300145553238866
Q ss_pred ECCCCCEEEEEECCCCEEEEEEEECCCCEEEEECCCC-EEEEEECCCCEEEEEECCCCCCCCCCEEECCCCEEEEEECCC
Q ss_conf 7789847999821991343126747998899944799-099998789969984104985434753631598999991799
Q 002615 615 DYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDH-NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSG 693 (900)
Q Consensus 615 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~dg-~i~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g 693 (900)
|..+.+..|+...++.. ....+.++++.+|+.+.+. .+..++..+.+.......... -....+.+++..++++. ++
T Consensus 162 D~~t~~v~~qI~v~~~p-~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~-p~~~~~~~dGk~~~v~~-~~ 238 (441)
T d1qnia2 162 DAETMDVAWQVIVDGNL-DNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNV-ERIAAAVKAGNFKTIGD-SK 238 (441)
T ss_dssp ETTTCSEEEEEEESSCC-CCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEH-HHHHHHHHTTCCBCCTT-CC
T ss_pred CCCCCEEEEEEECCCCC-CCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCC-CCEEEEECCCCEEEECC-CC
T ss_conf 37556064787369986-54698799998999851787318985157121789996885-11079966999999699-98
Q ss_pred CEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCEEEEEE-ECCCEEEEC
Q ss_conf 19999917987403468530785111123430799899995-259199997
Q 002615 694 RLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCL-VDGHVVALD 743 (900)
Q Consensus 694 ~i~~~d~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~i~~g~-~~g~i~~~d 743 (900)
+..++.... .+.+.....+... ....+++++.++|+++ .++.+.++|
T Consensus 239 -v~vvd~~~~-~~v~~~IPvgksP-hGv~vSPDGkyl~~~~~~~~tvsv~d 286 (441)
T d1qnia2 239 -VPVVDGRGE-SEFTRYIPVPKNP-HGLNTSPDGKYFIANGKLSPTVSVIA 286 (441)
T ss_dssp -CCEEECSSS-CSSEEEECCBSSC-CCEEECTTSCEEEEECTTSSBEEEEE
T ss_pred -CEEEECCCC-CCEEEEEECCCCC-CCCEECCCCCEEEEECCCCCCEEEEE
T ss_conf -289980368-7068997179886-67268999878999077599389998
|
| >d1dv5a_ a.28.1.3 (A:) apo-D-alanyl carrier protein {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: apo-D-alanyl carrier protein domain: apo-D-alanyl carrier protein species: Lactobacillus casei [TaxId: 1582]
Probab=98.20 E-value=1.6e-06 Score=51.31 Aligned_cols=66 Identities=12% Similarity=0.138 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHCCCCCC--CCCCCCCCCCCCC-CHHHHHHHHHHHC------CCCHHHH--CCCCHHHHHHHHHHH
Q ss_conf 089999999983103972--0236898001586-6599999999919------8710213--179989999999851
Q 002615 359 SDLLQVIRKAFGHALMVE--EVLHHDNFFTMGG-NSIAAAHVAHNLG------IDMRLIY--NFPTPSKLEIALLEK 424 (900)
Q Consensus 359 ~~~~~~l~~~~~~~l~~~--~i~~~~~Ff~~Gg-dSl~a~~l~~~l~------~~~~~~~--~~~t~~~l~~~l~~~ 424 (900)
+++++.++.+++++++.+ .+.++.+||+.|| |||.+++|...++ ++...++ .++|+..|+.++.+.
T Consensus 3 e~I~~~v~~il~~~l~~~~~~i~~d~~l~e~gglDSl~~vel~~~ie~~fgi~i~~~~l~~~~~~Tv~~l~~~v~~l 79 (80)
T d1dv5a_ 3 EAIKNGVLDILADLTGSDDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVSEFDRKEWDTPNKIIAKVEQA 79 (80)
T ss_dssp HHHHHHHHHHHHHHHTSSSTTTCSSCCSSTTSSCCSHHHHHHHHHHTTTSCCCCCCSSCCTTTTTSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 79999999999999565433247886644468887899999999999998898888996487378999999999983
|
| >d2pnga1 a.28.1.1 (A:1-76) Type I fatty acid synthase ACP domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Type I fatty acid synthase ACP domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.19 E-value=6.9e-08 Score=59.47 Aligned_cols=61 Identities=20% Similarity=0.187 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHCCCCC---CCCCCCCCCCCCCCCHHHHHHHHHHH------CCCCHHHHCCCCHHHHHHHH
Q ss_conf 8999999998310397---20236898001586659999999991------98710213179989999999
Q 002615 360 DLLQVIRKAFGHALMV---EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIAL 421 (900)
Q Consensus 360 ~~~~~l~~~~~~~l~~---~~i~~~~~Ff~~GgdSl~a~~l~~~l------~~~~~~~~~~~t~~~l~~~l 421 (900)
+.++.+.++|+++|++ ++|.++++||++|+|||.|+++.+.| .+++..++ ++|+..|+...
T Consensus 4 ~~e~~l~~~va~~Lgi~~~~~I~~~~~f~~lG~DSl~a~el~~~i~~~~g~~l~~~~l~-~~Ti~~L~el~ 73 (76)
T d2pnga1 4 EAQRDLVKAVAHILGIRDLAGINLDSSLADLGLDSLMGVEVRQILEREHDLVLPIREVR-QLTLRKLQEMS 73 (76)
T ss_dssp SCCCCGGGTHHHHHTCSSCTTSCSSSCHHHHTCSSHHHHHHHHHHHHHTCCCCCHHHHT-TCCSHHHHHTS
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHH-HHHHHHHHHHH
T ss_conf 89999999999995669774579998988848747999999999999857788999999-76599999997
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.15 E-value=4.2e-05 Score=42.92 Aligned_cols=130 Identities=7% Similarity=-0.064 Sum_probs=63.5
Q ss_pred EECCCCEEEEEECCCCCEEEEEECCCC------------------------------EEECEEEECCCCEEEEEE-ECCE
Q ss_conf 954898099997899818889864992------------------------------242616735998999996-4898
Q 002615 562 VGSHSHKFICADAKRSSVLWEIKLEGR------------------------------IECSAAVLADFSQVVVGC-YKGK 610 (900)
Q Consensus 562 igs~~g~i~~~d~~tG~~~w~~~~~~~------------------------------~~~~~~~~~~~~~i~vg~-~dg~ 610 (900)
.|.++|.+..+|..+++.+.+...-.. ..+....+.||.++|+.. .++.
T Consensus 16 Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~r 95 (441)
T d1qnia2 16 SGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTR 95 (441)
T ss_dssp ECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTTTE
T ss_pred ECCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCEECCCCCCCEEEEECCCCCE
T ss_conf 68877748999678980799997675789879998886504783133225675567772210326888889997389997
Q ss_pred EEEEECCCCCEEEEEECC-CCEEEEEEEECCCCEEEEE--CCC-----------------CEEEEEECCCCEEEEEECCC
Q ss_conf 999977898479998219-9134312674799889994--479-----------------90999987899699841049
Q 002615 611 IYFLDYLTGDIYWTFQTC-GEVKCQPVVDAPRQLIWCG--SHD-----------------HNLYALDFRNYRCVYKLPCG 670 (900)
Q Consensus 611 l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~i~~g--s~d-----------------g~i~~~d~~~g~~~w~~~~~ 670 (900)
|-.+|+.+++.......+ +.......+.++++..|+. +.+ ..+.++|..+.+..|+...+
T Consensus 96 VavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~ 175 (441)
T d1qnia2 96 VARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD 175 (441)
T ss_dssp EEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES
T ss_pred EEEEECCCCCEEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECC
T ss_conf 99998877847557956788786434870569989999566775443676630014555323886637556064787369
Q ss_pred CCCCCCCEEECCCCEEEEEECC
Q ss_conf 8543475363159899999179
Q 002615 671 GSIFGSPAIDEVHDVLYVASTS 692 (900)
Q Consensus 671 ~~~~~~~~~~~~~~~l~v~t~~ 692 (900)
+.. ......+++..+|+.+.+
T Consensus 176 ~~p-~~v~~spdGk~a~vt~~n 196 (441)
T d1qnia2 176 GNL-DNTDADYTGKYATSTCYN 196 (441)
T ss_dssp SCC-CCEEECSSSSEEEEEESC
T ss_pred CCC-CCEEECCCCCEEEEEECC
T ss_conf 986-546987999989998517
|
| >d1or5a_ a.28.1.1 (A:) Frenolicin polyketide synthase acyl carrier protein, Fren ACP {Streptomyces roseofulvus [TaxId: 33902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Frenolicin polyketide synthase acyl carrier protein, Fren ACP species: Streptomyces roseofulvus [TaxId: 33902]
Probab=98.13 E-value=1.8e-06 Score=51.01 Aligned_cols=67 Identities=19% Similarity=0.203 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHH------CCCCHHHHCCCCHHHHHHHHHHHC
Q ss_conf 089999999983103972-0236898001586659999999991------987102131799899999998512
Q 002615 359 SDLLQVIRKAFGHALMVE-EVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 425 (900)
Q Consensus 359 ~~~~~~l~~~~~~~l~~~-~i~~~~~Ff~~GgdSl~a~~l~~~l------~~~~~~~~~~~t~~~l~~~l~~~~ 425 (900)
+++.+.+++.++...+.. .+..+..|+++|+|||.+++++..| +++...+|.+||+..|+.++....
T Consensus 6 e~l~~il~e~~g~~~~~~~~~d~d~~f~dlG~DSl~~~el~~~le~~~g~~l~~~~~~~~~Ti~~l~~~v~~~~ 79 (82)
T d1or5a_ 6 DDLKKLLAETAGEDDSVDLAGELDTPFVDLGYDSLALLETAAVLQQRYGIALTDETVGRLGTPRELLDEVNTTP 79 (82)
T ss_dssp HHHHHHHHHHSCCCSSCCGGGCSSSCHHHHSCCHHHHHHHHHHHHTTSCCCCSHHHHHHCCCSHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHCC
T ss_conf 99999999996887666667776858988199727699999999999847589999873899999999997315
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.89 E-value=0.00036 Score=37.38 Aligned_cols=186 Identities=14% Similarity=0.100 Sum_probs=71.4
Q ss_pred CEEEECCCCEEEEEEE--CCEEEEEECCCCCEEEEEECCC-CEEEEEEEECCCCEEEEECCCCEEEEEE-CCCCEEEEEE
Q ss_conf 6167359989999964--8989999778984799982199-1343126747998899944799099998-7899699841
Q 002615 592 SAAVLADFSQVVVGCY--KGKIYFLDYLTGDIYWTFQTCG-EVKCQPVVDAPRQLIWCGSHDHNLYALD-FRNYRCVYKL 667 (900)
Q Consensus 592 ~~~~~~~~~~i~vg~~--dg~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~~~~~i~~gs~dg~i~~~d-~~~g~~~w~~ 667 (900)
..++..++ .+|+... .+.+..++..+....+ ....+ .......++. .+.||++...+.+..+. ..++..++..
T Consensus 18 ~vavd~dG-~i~v~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~~~~~ 94 (260)
T d1rwia_ 18 GVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTTV-LPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQTVLPF 94 (260)
T ss_dssp EEEECTTC-CEEEEECSSSCEEEEEC----CEEE-CCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCEECCC
T ss_pred EEEECCCC-CEEEEECCCCCEEEEECCCCCEEEE-ECCCCCCCCEEEEECC-CCCEEEEEEEECEEEEEEECCCEEEEEE
T ss_conf 89996999-9999971899889999389966897-4369866840899938-9988986310000355421120000001
Q ss_pred CCCCCCCCCCEEECCCCEEEEEEC-CCCEEEEECCCCCCEEEEEEECCC-CCEEEEEEEECCCEEEEE-EECCCEEEECC
Q ss_conf 049854347536315989999917-991999991798740346853078-511112343079989999-52591999979
Q 002615 668 PCGGSIFGSPAIDEVHDVLYVAST-SGRLTAISVKALPFHTLWLHELEV-PAFASLCITSANRHVICC-LVDGHVVALDS 744 (900)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~l~v~t~-~g~i~~~d~~~~~g~~~w~~~~~~-~~~~s~~~~~~~~~i~~g-~~~g~i~~~d~ 744 (900)
.... .....+++. .+.+|+... +..++.++.. +...+...... .......+..+ +.+|++ ..++.+..++.
T Consensus 95 ~~~~-~p~~iavd~-~g~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~i~~~~~-g~~~v~~~~~~~i~~~d~ 168 (260)
T d1rwia_ 95 DGLN-YPEGLAVDT-QGAVYVADRGNNRVVKLAAG---SKTQTVLPFTGLNDPDGVAVDNS-GNVYVTDTDNNRVVKLEA 168 (260)
T ss_dssp CSCC-SEEEEEECT-TCCEEEEEGGGTEEEEECTT---CSSCEECCCCSCCSCCEEEECTT-CCEEEEEGGGTEEEEECT
T ss_pred EEEE-ECCCCCCCC-CCEEEEECCCCCCCCCCCCC---CCEEEEEEECCCCCCCEEEECCC-CCEEEECCCCCCCCCCCC
T ss_conf 0000-000002455-32057503355532112322---22012232036677520545489-988641025643322234
Q ss_pred CCCEEEEECCCCCEECCC-CCCCCCCCEEEEEEE-CCEEEEEECCC
Q ss_conf 997776512799610056-323348994999942-89299996889
Q 002615 745 SGSIIWRCRTGGPIFAGP-CTSFALPSQVLICSR-NGSIYSFEQES 788 (900)
Q Consensus 745 ~G~~~w~~~~~~~~~~~~-~~~~~~~~~i~~gs~-dg~i~~~d~~t 788 (900)
++...+...... +..| .+..+.++.||++.. ++.++.++...
T Consensus 169 ~~~~~~~~~~~~--~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~ 212 (260)
T d1rwia_ 169 ESNNQVVLPFTD--ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS 212 (260)
T ss_dssp TTCCEEECCCSS--CCSEEEEEECTTCCEEEEETTTTEEEEECTTC
T ss_pred CCCEEEEEECCC--CCCCCCCEEEEEEEEEEEECCCCEEEEEECCC
T ss_conf 310012221011--47876312310001343214899899996999
|
| >d1f80d_ a.28.1.1 (D:) Acyl carrier protein {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Bacillus subtilis [TaxId: 1423]
Probab=97.87 E-value=9.4e-06 Score=46.78 Aligned_cols=63 Identities=17% Similarity=0.198 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHCCCCCC--CCCCCCCCC-CCCCCHHHHHHHHHHH------CCCCHHHHCCCCHHHHHHHH
Q ss_conf 089999999983103972--023689800-1586659999999991------98710213179989999999
Q 002615 359 SDLLQVIRKAFGHALMVE--EVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIAL 421 (900)
Q Consensus 359 ~~~~~~l~~~~~~~l~~~--~i~~~~~Ff-~~GgdSl~a~~l~~~l------~~~~~~~~~~~t~~~l~~~l 421 (900)
.++.+.+++++++.|+++ .+.++.+|+ ++|.|||.++.+...+ +++...++.++|++.++.++
T Consensus 2 ~dv~~~v~~iia~~l~~~~~~i~~~~~~~~DlG~DSl~~vel~~~le~~f~i~i~~~~~~~~~Tv~~l~~~i 73 (74)
T d1f80d_ 2 ADTLERVTKIIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAEKIATVGDAVNYI 73 (74)
T ss_dssp CHHHHHHHHHHHHHSSCCSSCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCCCCHHHHHHCCBHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHH
T ss_conf 689999999999998849988698731777437528679999999999868998999986399999999987
|
| >d1t8ka_ a.28.1.1 (A:) Acyl carrier protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Escherichia coli [TaxId: 562]
Probab=97.45 E-value=0.00015 Score=39.67 Aligned_cols=67 Identities=21% Similarity=0.253 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHCCCCC--CCCCCCCCCC-CCCCCHHHHHHHHHHH------CCCCHHHHCCCCHHHHHHHHHHHC
Q ss_conf 08999999998310397--2023689800-1586659999999991------987102131799899999998512
Q 002615 359 SDLLQVIRKAFGHALMV--EEVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 425 (900)
Q Consensus 359 ~~~~~~l~~~~~~~l~~--~~i~~~~~Ff-~~GgdSl~a~~l~~~l------~~~~~~~~~~~t~~~l~~~l~~~~ 425 (900)
+++++.++++.++.+++ ..+.++++|. ++|.|||..+.|...+ .++...+...+|++.+..++..+.
T Consensus 1 s~I~~~v~~iia~~l~i~~~~i~~~~~l~~dLg~DSl~~~el~~~iE~~f~i~i~~~~~~~~~Tv~dlv~~i~~~~ 76 (77)
T d1t8ka_ 1 STIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYINGHQ 76 (77)
T ss_dssp CCHHHHHHHHHHHHHTCCGGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHCCCHHHCCCCCCCHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHCC
T ss_conf 9399999999999988898776999860120244624899999999998689989999871899999999998760
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.99 E-value=0.0052 Score=30.51 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=9.4
Q ss_pred CCEEEEEE-ECCEEEEEECCCCC
Q ss_conf 99499994-28929999688984
Q 002615 769 PSQVLICS-RNGSIYSFEQESGN 790 (900)
Q Consensus 769 ~~~i~~gs-~dg~i~~~d~~tG~ 790 (900)
++.||... .++.|+.++..+|+
T Consensus 218 ~~~ly~td~~~~~I~~~~~~~g~ 240 (266)
T d1ijqa1 218 EDKVFWTDIINEAIFSANRLTGS 240 (266)
T ss_dssp TTEEEEEETTTTEEEEEETTTCC
T ss_pred CCEEEEEECCCCEEEEEECCCCC
T ss_conf 99999998999969999998996
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.79 E-value=0.0077 Score=29.51 Aligned_cols=56 Identities=7% Similarity=-0.071 Sum_probs=33.4
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEECEEEECCCCEEEEEEECCEEEEEECCCCCEEE
Q ss_conf 9809999789981888986499224261673599899999648989999778984799
Q 002615 566 SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYW 623 (900)
Q Consensus 566 ~g~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg~l~~~d~~tG~~~w 623 (900)
.+.++.+|..+|+.. ...........+.+++|+..++.. .++.+|.++..+|+...
T Consensus 91 ~~~~~l~d~~~~~~~-~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~ 146 (470)
T d2bgra1 91 TASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYR 146 (470)
T ss_dssp EEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEE
T ss_pred CCEEEEEECCCCCCC-CCCCCCCCCCCCCCCCCCCEEEEE-ECCCCEEEECCCCCEEE
T ss_conf 734999989888513-124687423101014676413575-14641379889994653
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.97 E-value=0.023 Score=26.64 Aligned_cols=23 Identities=4% Similarity=0.131 Sum_probs=9.7
Q ss_pred CCEEEEEE-ECCEEEEEECCCCCE
Q ss_conf 99499994-289299996889844
Q 002615 769 PSQVLICS-RNGSIYSFEQESGNL 791 (900)
Q Consensus 769 ~~~i~~gs-~dg~i~~~d~~tG~~ 791 (900)
++.||... ..+.|+.+|..+|+.
T Consensus 218 ~~~lYwtd~~~~~I~~~~~~~g~~ 241 (263)
T d1npea_ 218 GKNLYYTDWKTNSVIAMDLAISKE 241 (263)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEE
T ss_pred CCEEEEEECCCCEEEEEECCCCCC
T ss_conf 999999999999799998989951
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.54 E-value=0.035 Score=25.61 Aligned_cols=78 Identities=9% Similarity=-0.013 Sum_probs=43.2
Q ss_pred EEEEEECCCCCEEEEEECCCCEEECEEEECCCCEEEEEEECC---EEEEEECCCCCEEEEEECCCCEEEEEEEECCCCEE
Q ss_conf 099997899818889864992242616735998999996489---89999778984799982199134312674799889
Q 002615 568 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKG---KIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI 644 (900)
Q Consensus 568 ~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~dg---~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i 644 (900)
.|+..|.+.+..+--.... ....++.+++||+.|+...... .++.++..++.........+ ....+.+.+++..+
T Consensus 20 ~l~i~d~dG~~~~~l~~~~-~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~i 97 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVVHRSP-QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR-HNGAPAFSPDGSKL 97 (269)
T ss_dssp EEEEEETTSCSCEEEEEES-SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSS-CEEEEEECTTSSEE
T ss_pred EEEEECCCCCCCEEEECCC-CCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCEEEEEEEEC-CCCCCEECCCCCEE
T ss_conf 9999928999767986589-842603887899989999815267513443113675067764202-45430244889864
Q ss_pred EEE
Q ss_conf 994
Q 002615 645 WCG 647 (900)
Q Consensus 645 ~~g 647 (900)
+..
T Consensus 98 ~~~ 100 (269)
T d2hqsa1 98 AFA 100 (269)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 676
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.52 E-value=0.035 Score=25.56 Aligned_cols=107 Identities=8% Similarity=0.007 Sum_probs=66.7
Q ss_pred CEEEEEECCCCEEEEEECCCCCEEEEEECCC-----CEEECEEEECCCCEEEEEE---------ECCEEEEEECCCCCEE
Q ss_conf 6299995489809999789981888986499-----2242616735998999996---------4898999977898479
Q 002615 557 DIYLFVGSHSHKFICADAKRSSVLWEIKLEG-----RIECSAAVLADFSQVVVGC---------YKGKIYFLDYLTGDIY 622 (900)
Q Consensus 557 ~~~i~igs~~g~i~~~d~~tG~~~w~~~~~~-----~~~~~~~~~~~~~~i~vg~---------~dg~l~~~d~~tG~~~ 622 (900)
+.++|. .++.++.+|..+|+..-.+.... .-..+..+++|+.+|++.+ .++.++.+|.++|+..
T Consensus 28 ~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~ 105 (470)
T d2bgra1 28 HEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI 105 (470)
T ss_dssp SEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC
T ss_pred CEEEEE--CCCCEEEEECCCCCEEEEECHHHHHHCCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEEEEECCCCCCC
T ss_conf 979997--599499998899978999701564431676540599898897999977710001046734999989888513
Q ss_pred EEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEE
Q ss_conf 998219913431267479988999447990999987899699841
Q 002615 623 WTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKL 667 (900)
Q Consensus 623 w~~~~~~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~~g~~~w~~ 667 (900)
...........+.+.+++..|... .++.++.++..+|+.....
T Consensus 106 -~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t 148 (470)
T d2bgra1 106 -TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRIT 148 (470)
T ss_dssp -CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECC
T ss_pred -CCCCCCCCCCCCCCCCCCCEEEEE-ECCCCEEEECCCCCEEEEE
T ss_conf -124687423101014676413575-1464137988999465321
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.71 E-value=0.061 Score=24.14 Aligned_cols=77 Identities=13% Similarity=0.075 Sum_probs=34.4
Q ss_pred EEEEEECCCCCEEEEEECCCCEEEEEEEECCCCEEEEECCC---CEEEEEECCCCEEEEEECCCCCCCCCCEEECCCCEE
Q ss_conf 89999778984799982199134312674799889994479---909999878996998410498543475363159899
Q 002615 610 KIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD---HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVL 686 (900)
Q Consensus 610 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~d---g~i~~~d~~~g~~~w~~~~~~~~~~~~~~~~~~~~l 686 (900)
.||..|. +|.-......+......|.+++++..|.+.+.. ..++.++..++.........+. ...+...+++..+
T Consensus 20 ~l~i~d~-dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~spdg~~i 97 (269)
T d2hqsa1 20 ELRVSDY-DGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH-NGAPAFSPDGSKL 97 (269)
T ss_dssp EEEEEET-TSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSC-EEEEEECTTSSEE
T ss_pred EEEEECC-CCCCCEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCEEEEEEEECC-CCCCEECCCCCEE
T ss_conf 9999928-9997679865898426038878999899998152675134431136750677642024-5430244889864
Q ss_pred EE
Q ss_conf 99
Q 002615 687 YV 688 (900)
Q Consensus 687 ~v 688 (900)
+.
T Consensus 98 ~~ 99 (269)
T d2hqsa1 98 AF 99 (269)
T ss_dssp EE
T ss_pred EE
T ss_conf 67
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=92.89 E-value=0.13 Score=22.12 Aligned_cols=182 Identities=9% Similarity=-0.001 Sum_probs=76.4
Q ss_pred EEEEEECC--CCEEE--EEECCCCCEEEE--EECCCC-EEECEEEECCCCEEEEEEECCEEE--EEECCCCCEEEE--EE
Q ss_conf 29999548--98099--997899818889--864992-242616735998999996489899--997789847999--82
Q 002615 558 IYLFVGSH--SHKFI--CADAKRSSVLWE--IKLEGR-IECSAAVLADFSQVVVGCYKGKIY--FLDYLTGDIYWT--FQ 626 (900)
Q Consensus 558 ~~i~igs~--~g~i~--~~d~~tG~~~w~--~~~~~~-~~~~~~~~~~~~~i~vg~~dg~l~--~~d~~tG~~~w~--~~ 626 (900)
..+++|+. ++.|+ .+|.+++++.-. ...... ..+..+++.+++.+|+.+. +.+. .++.. +...-. ..
T Consensus 3 ~~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~-~~~~~~~~~~ 80 (365)
T d1jofa_ 3 HHLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSP-TEIVHEASHP 80 (365)
T ss_dssp EEEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEET-TEEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCEEEECCCCCEEEEEEC-CCEEEEEEECC-CCEEEEEEEC
T ss_conf 199999314999899999858889389845445168999777999489899999938-94789999089-9769876412
Q ss_pred CCCCEEEEEEEECCCCEEEEEC---CCCEEEEEECCC-CEEE--EEECC--------------CCCCCCCCEEECCCCEE
Q ss_conf 1991343126747998899944---799099998789-9699--84104--------------98543475363159899
Q 002615 627 TCGEVKCQPVVDAPRQLIWCGS---HDHNLYALDFRN-YRCV--YKLPC--------------GGSIFGSPAIDEVHDVL 686 (900)
Q Consensus 627 ~~~~~~~~~~~~~~~~~i~~gs---~dg~i~~~d~~~-g~~~--w~~~~--------------~~~~~~~~~~~~~~~~l 686 (900)
.+. ..+...+.+++..+|+.. ..+.++.+.... +... ..... .++-.....+++++..+
T Consensus 81 ~~~-~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l 159 (365)
T d1jofa_ 81 IGG-HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYL 159 (365)
T ss_dssp CCS-SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred CCC-CCEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCEEEEEEECCEECCCCCCCCCCCCCCCEEEEECCCCCEE
T ss_conf 899-8678998789987999993279978998674578874206866403300476467556889811597888999989
Q ss_pred EEEECC-CCEEEEECCCCCCEEE--EEEECCC--CCEEEEEEEECCCEEEEEEE-CCCEEEEC
Q ss_conf 999179-9199999179874034--6853078--51111234307998999952-59199997
Q 002615 687 YVASTS-GRLTAISVKALPFHTL--WLHELEV--PAFASLCITSANRHVICCLV-DGHVVALD 743 (900)
Q Consensus 687 ~v~t~~-g~i~~~d~~~~~g~~~--w~~~~~~--~~~~s~~~~~~~~~i~~g~~-~g~i~~~d 743 (900)
|++... ..++.++... +|+.. ....... ..-....+.+++..+|+... ++.|.+|+
T Consensus 160 ~v~d~g~d~v~~~~~~~-~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~ 221 (365)
T d1jofa_ 160 YSADLTANKLWTHRKLA-SGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYV 221 (365)
T ss_dssp EEEETTTTEEEEEEECT-TSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEECCCCEEEEEECCC-CCCEEECCCEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEE
T ss_conf 98207998799997068-871665251111278874089998899866999515899899999
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=91.53 E-value=0.2 Score=21.13 Aligned_cols=69 Identities=20% Similarity=0.267 Sum_probs=43.2
Q ss_pred CCEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEECEEEECCCCEEEEEEE-C-----CEEEEEECCCCCE
Q ss_conf 625995189629999548980999978998188898649922426167359989999964-8-----9899997789847
Q 002615 548 SPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-K-----GKIYFLDYLTGDI 621 (900)
Q Consensus 548 sp~v~~~~~~~~i~igs~~g~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~~-d-----g~l~~~d~~tG~~ 621 (900)
+|.+. ++..+|+ .++.||.+|+.+|+.. .+......+..+.+++|+..|+.... + ..||.++..+|+.
T Consensus 7 sPdi~---G~~v~f~--~~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~ 80 (281)
T d1k32a2 7 NPDIH---GDRIIFV--CCDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI 80 (281)
T ss_dssp EEEEE---TTEEEEE--ETTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred CCCCC---CCEEEEE--ECCCEEEEECCCCCEE-EEECCCCCCCCEEECCCCCEEEEEEEECCCCCCEEEEEEEECCCCE
T ss_conf 88879---9999999--0996899989999879-9766998526779878999899998628987722899998259952
Q ss_pred E
Q ss_conf 9
Q 002615 622 Y 622 (900)
Q Consensus 622 ~ 622 (900)
.
T Consensus 81 ~ 81 (281)
T d1k32a2 81 K 81 (281)
T ss_dssp E
T ss_pred E
T ss_conf 8
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=84.63 E-value=0.57 Score=18.38 Aligned_cols=111 Identities=10% Similarity=0.062 Sum_probs=55.2
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEECEEEECCCCEEEEEE------ECCEEEEEECCC-CCEEEEEEC
Q ss_conf 8962999954898099997899818889864992242616735998999996------489899997789-847999821
Q 002615 555 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGC------YKGKIYFLDYLT-GDIYWTFQT 627 (900)
Q Consensus 555 ~~~~~i~igs~~g~i~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~vg~------~dg~l~~~d~~t-G~~~w~~~~ 627 (900)
+.+..+++++..|.+.++-...|+...-.+ ..+..+......-+.+...- .-..+|..|.+. |+. .+...
T Consensus 24 ~~d~ll~~~~seG~vni~~l~g~~~vkLtk--ePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE-~~i~s 100 (313)
T d2hu7a1 24 DGDKLLVVGFSEGSVNAYLYDGGETVKLNR--EPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEE-QRLEA 100 (313)
T ss_dssp TTTEEEEEEEETTEEEEEEESSSSCEECCS--SCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCE-EECTT
T ss_pred CCCCEEEEEECCCEEEEEEEECCEEEEEEC--CCCCCCCCCCCCCCEEEEEEEHHCCCCEEEEEEECCCCCCEE-EEECC
T ss_conf 698589998326668899996887899741--666676888667646889760124700024898705888802-47337
Q ss_pred CCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEEC
Q ss_conf 99134312674799889994479909999878996998410
Q 002615 628 CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLP 668 (900)
Q Consensus 628 ~~~~~~~~~~~~~~~~i~~gs~dg~i~~~d~~~g~~~w~~~ 668 (900)
...+.......++.+.+++|+.....+.|-++.|+...-..
T Consensus 101 pk~vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~ 141 (313)
T d2hu7a1 101 VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR 141 (313)
T ss_dssp SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEEECCCEEEEECCCCCCEEEEEEECCCEEEECC
T ss_conf 74079988652683389965567833799982895543003
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.34 E-value=0.59 Score=18.30 Aligned_cols=32 Identities=16% Similarity=0.354 Sum_probs=19.0
Q ss_pred CCCEEEEEEECCEEEEEECCCCCEEEEEECCC
Q ss_conf 89949999428929999688984433882499
Q 002615 768 LPSQVLICSRNGSIYSFEQESGNLLWEYSVGD 799 (900)
Q Consensus 768 ~~~~i~~gs~dg~i~~~d~~tG~~~w~~~~~~ 799 (900)
..|.+|+-|..|.++.||.+||..+..-....
T Consensus 266 kygiiyviTK~G~i~lyDleTgt~i~~nRIs~ 297 (327)
T d1utca2 266 KHDVVFLITKYGYIHLYDLETGTCIYMNRISG 297 (327)
T ss_dssp TTTEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred CCCEEEEEECCCEEEEEECCCCCEEEEEECCC
T ss_conf 37999999667589999756662899940478
|