Citrus Sinensis ID: 002622

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------90
MASTTVTWSPTSLQLRLALNCWSSSCNSPSVLVRSRFKKLNRPVHLRCFGPSAGRRRGCSLSIRSESNAESFSGWSESGNDGEQSIESQKKGGLGGIVQAGVAGVVLFAGLTFAALSLSKRSTSRPREQMEPLTAAQDVSIVPDHKIDKFEEYGYAGNNVKQDDRSLESKTALTSPKLPEPEVVSGTENASPLEGSDSILDANLPESASEITGENPIDVEPSSFSNPTDLGNDGSKFSRIFSDSSSISSSHAPIEPLAAVISVSSDTTVEPQILPKGDTETVASPSTIKNVEQSEKPLLSGEDSSSSMEVHDLNKNGSSGTSVSPSIFPFSNEKETCDLNESNSSSFTESPPTGSSSSPAGIPAPSVVSAALQVLPGKVLVPAVVDQVQGQALSALQVLKVIEADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVEKLTQRFKT
cccccccccccccHHHHHccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
cccEEEEcccccHEEEEEHcccccccccccEEEEcccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHcccccccHHHcccccccccccEEEcccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccEEccccccccccccHHHHHHHHHHHHHHHHcccccccccHHcccccccccccccccccccHHHHHHHHHcccccccccccccccccccccEEcccccccHHHHHHccccccccccccccHHHHHHHcccccHHHccHHHHHHHHHHHHcccHHHHHHHHcccEcccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccEHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
masttvtwsptSLQLRLALNcwssscnspsvlVRSRfkklnrpvhlrcfgpsagrrrgcslsirsesnaesfsgwsesgndgeqsiesqkkgglggivqAGVAGVVLFAGLTFAALSLskrstsrpreqmepltaaqdvsivpdhkidkfeeygyagnnvkqddrslesktaltspklpepevvsgtenasplegsdsildanlpesaseitgenpidvepssfsnptdlgndgskfsrifsdsssissshapiePLAAVIsvssdttvepqilpkgdtetvaspstiknveqsekpllsgedssssmevhdlnkngssgtsvspsifpfsneketcdlnesnsssftespptgsssspagipapSVVSAALQvlpgkvlvpAVVDQVQGQALSALQVLKVIEAdvkpgdlcirREYARWLVSASStltrstmskvypamyienvtdlafdditpedpdfssiqgLAEAGLISsklshrdllneepgpifflpesplsrqDLVSWKMALEKRQLPEANKKILYQLSgfididkinpdawPALLADLTAGEQGIIALAFGctrlfqpdkpvtNAQAAVALAIGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRwerqgikvvvdkdlreeSDAAVMWVNagkqfsvdqTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVEKLTQRFKT
masttvtwsptslQLRLALNCWSSSCNSPSVLVRsrfkklnrpvhlrcfgpsagrrrgCSLSIrsesnaesfsgwsesgnDGEQSIESQKKGGLGGIVQAGVAGVVLFAGLTFAALslskrstsrpreqmepltaaqdvsivpDHKIDKFEEYGYagnnvkqddrslESKTaltspklpepevvSGTENASPLEGSDSILDANLPESASEITGENPIDVEPSSFSNPTDLGNDGSKFSRIFSDSSSISSSHAPIEPLAAVISVSsdttvepqilpkgdtetvaspstiknveqsekPLLSGEDSSSSMEVHDLNKNGSSGTSVSPSIFPFSNEKETCDLNESNSSSFTESPPTGSSSSPAGIPAPSVVSAALQVLPGKVLVPAVVDQVQGQALSALQVLKVIEADVKPGDLCIRREYARWlvsasstltrstmskvYPAMYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESfekelsmerekidvVEKMAEEARQELerlraerevdkIALMKERAAIESEMEILSKLRREVEEQLeslmsnkveisyeKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKAlegardrwerqgikvvvdkdlrEESDAAVMWVNagkqfsvdqtvSRAQSLVDKLKAMandvsgkskEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLtegakrvagdcregvekltqrfkt
MASTTVTWSPTSLQLRLALNCWSSSCNSPSVLVRSRFKKLNRPVHLRCFGPSAGRRRGCSLSIRSESNAESFSGWSESGNDGEQSIESQKKgglggivqagvagvvlFAGLTFAALSLSKRSTSRPREQMEPLTAAQDVSIVPDHKIDKFEEYGYAGNNVKQDDRSLESKTALTSPKLPEPEVVSGTENASPLEGSDSILDANLPESASEITGENPIDVEPSSFSNPTDLGNDGskfsrifsdsssisssHAPIEPLAAVISVSSDTTVEPQILPKGDTETVASPSTIKNVEQSEKPLLSGEDSSSSMEVHDLNKNGSSGTSVSPSIFPFSNEKETCDLNESNsssftespptgsssspagipapsvvsaaLQVLPGKVLVPAVVDQVQGQALSALQVLKVIEADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDAVNEELQRIeaesaaenavsehsaLVAEVEKEINESFEKELSMEREKIDVVEKMaeearqelerlraereVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVEKLTQRFKT
******TWSPTSLQLRLALNCWSSSCNSPSVLVRSRFKKLNRPVHLRCFG*******************************************LGGIVQAGVAGVVLFAGLTFAALS****************************KIDKFEEYGY*******************************************************************************************************************************************************************************************************************VVSAALQVLPGKVLVPAVVDQVQGQALSALQVLKVIEADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITP*******IQGLAEAGLI**************GPIFFLPE**LSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIG*********************************************************************************************************************************************************************************WERQGIKVVVDKDLREESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKA*********************************************************
*******WSPTSLQLRLALNCWSSS************************************************************************VQAGVAGVVLFAGLTFAA*************************************************************************************************************************************************************ILPKGDTET************************************************************************************************KVLVPAVVDQVQGQALSALQV***********DLCIRREYARWLVSASSTLT***************VTDLAFDDITPEDPDFSSIQGLAEAGLISSKLSH*****EEPGPIFFLPESPLSRQDLVSWKMALEKRQLP*****ILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEA**A*****************************************************************************************************************************************************************************************************************************************************************************************************************L*Q****
***********SLQLRLALNCWSSSCNSPSVLVRSRFKKLNRPVHLRCFGPSAGRRRGCSLSI****************************GGLGGIVQAGVAGVVLFAGLTFAALSLS************PLTAAQDVSIVPDHKIDKFEEYGYAGNNVKQDDRSLESKTALTSP****************LEGSDSILDANLPESASEITGENPIDVEPSSFSNPTDLGNDGSKFSRIFS*********APIEPLAAVISVSSDTTVEPQILPKGDTETVASPSTIK*********************************VSPSIFPFSNEKET*************************IPAPSVVSAALQVLPGKVLVPAVVDQVQGQALSALQVLKVIEADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDAVNEELQRIE*************ALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMA***********************RWERQGIKVVVDKDLREESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVEKLTQRFKT
**STTVTWSPTSLQLRLALNCWSSSCNSPSVLVRSRFKKLNRPVHLRCFGPSA****************************************LGGIVQAGVAGVVLFAGLTFAALSLS****************************************************************************************************************************************************TVEPQILPKGDTETVASPSTIKNV*************************************************************************************GKVLVPAVVDQVQGQALSALQVLKVIEADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISS************GPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVEKLTQRFKT
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASTTVTWSPTSLQLRLALNCWSSSCNSPSVLVRSRFKKLNRPVHLRCFGPSAGRRRGCSLSIRSESNAESFSGWSESGNDGEQSIESQKKGGLGGIVQAGVAGVVLFAGLTFAALSLSKRSTSRPREQMEPLTAAQDVSIVPDHKIDKFEEYGYAGNNVKQDDRSLESKTALTSPKLPEPEVVSGTENASPLEGSDSILDANLPESASEITGENPIDVEPSSFSNPTDLGNDGSKFSRIFSDSSSISSSHAPIEPLAAVISVSSDTTVEPQILPKGDTETVASPSTIKNVEQSEKPLLSGEDSSSSMEVHDLNKNGSSGTSVSPSIFPFSNEKETCDLNESNSSSFTESPPTGSSSSPAGIPAPSVVSAALQVLPGKVLVPAVVDQVQGQALSALQVLKVIEADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKVExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSMAxxxxxxxxxxxxxxxxxxxxxxxxxxxxGIKVVVDKDLREESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVEKLTQRFKT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query899 2.2.26 [Sep-21-2011]
Q8IDX63130 Reticulocyte-binding prot yes no 0.183 0.052 0.246 0.0002
>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum (isolate 3D7) GN=PF13_0198 PE=3 SV=1 Back     alignment and function desciption
 Score = 48.5 bits (114), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 94/195 (48%), Gaps = 30/195 (15%)

Query: 590  EELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELE 649
            EEL+R E E   E    E      E++++  E  +KE +++R++ + ++K  E  RQE E
Sbjct: 2751 EELKRQEQERL-EREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQE 2809

Query: 650  RLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRK 709
            RL  E+              + +++   +L+R+ +E+L+   + K +   E+ER   L+K
Sbjct: 2810 RLEREK--------------QEQLQKEEELKRQEQERLQKEEALKRQ---EQER---LQK 2849

Query: 710  EAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVV 769
            E E + QE  RL      ERK + +A      ++K   +  K +   +D   ++  +++ 
Sbjct: 2850 EEELKRQEQERL------ERKKIELAEREQHIKSKLESDMVKII---KDELTKEKDEIIK 2900

Query: 770  DKDLREESDAAVMWV 784
            +KD++        W+
Sbjct: 2901 NKDIKLRHSLEQKWL 2915
Involved in reticulocyte adhesion.
Plasmodium falciparum (isolate 3D7) (taxid: 36329)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query899
255545258976 conserved hypothetical protein [Ricinus 0.991 0.912 0.575 0.0
225464485985 PREDICTED: uncharacterized protein LOC10 0.656 0.598 0.717 0.0
302143846 1040 unnamed protein product [Vitis vinifera] 0.656 0.567 0.717 0.0
224134861592 predicted protein [Populus trichocarpa] 0.618 0.939 0.719 0.0
356529194975 PREDICTED: uncharacterized protein LOC10 0.704 0.649 0.653 0.0
224122346793 predicted protein [Populus trichocarpa] 0.621 0.704 0.708 0.0
15237846946 uncharacterized protein [Arabidopsis tha 0.972 0.923 0.498 0.0
23397269946 unknown protein [Arabidopsis thaliana] 0.972 0.923 0.497 0.0
356561542 1002 PREDICTED: uncharacterized protein LOC10 0.708 0.635 0.647 0.0
297808395947 hypothetical protein ARALYDRAFT_489250 [ 0.978 0.929 0.496 0.0
>gi|255545258|ref|XP_002513690.1| conserved hypothetical protein [Ricinus communis] gi|223547598|gb|EEF49093.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  976 bits (2523), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/984 (57%), Positives = 698/984 (70%), Gaps = 93/984 (9%)

Query: 1   MASTTV-TWSPTSLQLRLALNCWSSSC-NSPSVLV-RSRFKKLNRPVHLRC---FGPSAG 54
           MAS+   T SPTSLQLRLALNC    C  SP +L+ ++R  +++R  H  C    G    
Sbjct: 1   MASSMASTCSPTSLQLRLALNC--RKCRGSPVLLILQARATRIDRHSHKLCASHIGYGVQ 58

Query: 55  R-RRGCSLSIRSESNAESFSGWSESGNDGEQSIESQKKGGLGGIVQAGVAGVVLFAGLTF 113
           R R G   +  S + A++F+GW++SG DG+QS+E+QKK  + G+V AGVAG++L AGLTF
Sbjct: 59  RPRYGSPWTASSSAAADNFAGWTDSG-DGDQSVETQKKKWIQGMVGAGVAGIILVAGLTF 117

Query: 114 AALSLSKRSTSRPREQMEPLTAAQDVSIVPDHKIDKFEEYGYAGN--NVKQDDRSLESKT 171
           AALSLSKR+T + ++QMEPLT  Q+VS+V D + DK E+   A +  N+K++  SLE KT
Sbjct: 118 AALSLSKRTTLKTKQQMEPLTVQQEVSLVSDDEEDKIEKNTSAESSANLKEEYISLEHKT 177

Query: 172 ALTSPKLPEPEVVSGTENASPLEG-SDSILDA---------------------------- 202
             T   LP    +  T N + L G +D +L A                            
Sbjct: 178 N-TDVDLPSSPQIEETHNENKLSGDTDQLLSADNGNYIISSNDTVDNAPVQEDLQYDSAF 236

Query: 203 --------------NLPESASEITGENPIDVEPSSFSNPTDLGNDGSK-----FSRIFSD 243
                         NLPES      +N ++ EP+   N  +   + ++          S 
Sbjct: 237 DSKLGVLETTPNSTNLPESKIAKIDKNLVNGEPAYSLNIINTITEHTEAKENTIPSSDSS 296

Query: 244 SSSISSSHAPIEPLAAVISVSSDTTVEPQILPKGDTETVASPSTIKNVEQSEKPLLSGED 303
            S +  S  P+  ++  I+++SDT  E   L K   ++ AS  T + +  S   + S + 
Sbjct: 297 ISPVLKSSEPV-VVSTSITLTSDTVSEVGNLFKDGMDSEASVPTKEELNTSTNQV-STDR 354

Query: 304 SSSSMEVHDLNKNGSSGTSVSPS-IFPFSNEKETC---DLNESNSSSFTESPPTGSSSSP 359
           +SSS+E++ L ++GSSG +      +PF+N+++     D+N S +SS  ESPP   S S 
Sbjct: 355 NSSSLEMNYLTESGSSGVTSVSEWAYPFANKQDIVANDDMNLSKTSS--ESPPFSGSFSS 412

Query: 360 AGIPAPSVVSAALQVLPGKVLVPAVVDQVQGQALSALQVLKVIEADVKPGDLCIRREYAR 419
           AG+PAPS V  +LQV PGK+LVPAVVDQ  GQAL+ALQVLKVIEADV+P DLC RREYAR
Sbjct: 413 AGVPAPSAVPESLQVSPGKILVPAVVDQTHGQALAALQVLKVIEADVQPSDLCTRREYAR 472

Query: 420 WLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISSKLSHR 479
           WLV+ASS L+RST+SKVYPAMYIEN T+ AFDDITP+DPDFSSIQGLAEAGLISS+LS+ 
Sbjct: 473 WLVAASSALSRSTLSKVYPAMYIENATEPAFDDITPDDPDFSSIQGLAEAGLISSRLSNH 532

Query: 480 DLLN--EEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDKINPD 537
           DLL+  E+ GP+ F PESPLSRQDLVSWKMALEKRQLPEAN+KILYQLSGF D+DKI+PD
Sbjct: 533 DLLSPVEDQGPLNFSPESPLSRQDLVSWKMALEKRQLPEANRKILYQLSGFRDVDKIHPD 592

Query: 538 AWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDAVNEELQRIEA 597
           AWPAL+ADL+AG+QGII+LAFGCTRLFQP+KPVT AQAAVALAIGEASD VNEEL RIEA
Sbjct: 593 AWPALIADLSAGDQGIISLAFGCTRLFQPNKPVTKAQAAVALAIGEASDIVNEELARIEA 652

Query: 598 ESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREV 657
           ES AENAVS H+ALVA+VE++IN SFEKEL MEREKI+ VEKMAEEAR ELERLRAERE 
Sbjct: 653 ESMAENAVSAHNALVAQVEQDINASFEKELLMEREKINAVEKMAEEARLELERLRAEREA 712

Query: 658 DKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQE 717
           D  ALMKERA+IE+EME+LS+L+ EVEEQL++L+S+KVEISYEKERIN L+KEAENE QE
Sbjct: 713 DNFALMKERASIEAEMEVLSRLKGEVEEQLQTLLSSKVEISYEKERINKLQKEAENEKQE 772

Query: 718 IARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREES 777
           I+RLQYELEVERKALS+ARAWAEDEAKRARE AK +E ARDRWERQGIKVVVD DLREE+
Sbjct: 773 ISRLQYELEVERKALSIARAWAEDEAKRAREHAKVIEEARDRWERQGIKVVVDNDLREET 832

Query: 778 DAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKK 837
            A   WV   +QFSV+ TVSRA+ LV +LK +A++  GKSKE+INTII KIL+ IS LK+
Sbjct: 833 SAGGTWVATARQFSVEGTVSRAEKLVGELKLLADNARGKSKEVINTIIQKILVIISRLKE 892

Query: 838 WASKASMRAAELKDATILKAKGSVQE----------------------LQQSTAEFRSNL 875
           W S+A  +A ELKDA +LKAK SV+E                      LQQSTAEF   +
Sbjct: 893 WISEARTQAGELKDAAVLKAKESVEELQKNTSEFSSTIKERARGSIYGLQQSTAEFSFAM 952

Query: 876 TEGAKRVAGDCREGVEKLTQRFKT 899
            EGAKRVAGDCREGVE+LTQRFK+
Sbjct: 953 KEGAKRVAGDCREGVERLTQRFKS 976

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225464485|ref|XP_002271744.1| PREDICTED: uncharacterized protein LOC100264485 [Vitis vinifera] Back     alignment and taxonomy information
>gi|302143846|emb|CBI22707.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224134861|ref|XP_002321923.1| predicted protein [Populus trichocarpa] gi|222868919|gb|EEF06050.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356529194|ref|XP_003533181.1| PREDICTED: uncharacterized protein LOC100780360 [Glycine max] Back     alignment and taxonomy information
>gi|224122346|ref|XP_002318812.1| predicted protein [Populus trichocarpa] gi|222859485|gb|EEE97032.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15237846|ref|NP_197777.1| uncharacterized protein [Arabidopsis thaliana] gi|10176856|dbj|BAB10062.1| unnamed protein product [Arabidopsis thaliana] gi|332005846|gb|AED93229.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|23397269|gb|AAN31916.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356561542|ref|XP_003549040.1| PREDICTED: uncharacterized protein LOC100810148 [Glycine max] Back     alignment and taxonomy information
>gi|297808395|ref|XP_002872081.1| hypothetical protein ARALYDRAFT_489250 [Arabidopsis lyrata subsp. lyrata] gi|297317918|gb|EFH48340.1| hypothetical protein ARALYDRAFT_489250 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query899
TAIR|locus:2172853946 AT5G23890 [Arabidopsis thalian 0.793 0.753 0.516 5.7e-178
TAIR|locus:2156687761 AT5G52410 [Arabidopsis thalian 0.580 0.685 0.569 9.6e-161
TAIR|locus:2102375558 AT3G25680 "AT3G25680" [Arabido 0.426 0.686 0.343 6.1e-56
UNIPROTKB|G4N0Y1709 MGG_09571 "Uncharacterized pro 0.422 0.535 0.223 1.7e-05
UNIPROTKB|Q6GQ73 719 hook3 "Protein Hook homolog 3" 0.292 0.365 0.232 4.7e-05
MGI|MGI:2684999 1091 Tmf1 "TATA element modulatory 0.242 0.199 0.252 6.4e-05
UNIPROTKB|E1B7Q0 718 HOOK3 "Protein Hook homolog 3" 0.291 0.364 0.238 0.00013
UNIPROTKB|F1PQQ3 718 HOOK3 "Uncharacterized protein 0.291 0.364 0.238 0.00013
UNIPROTKB|Q86VS8 718 HOOK3 "Protein Hook homolog 3" 0.291 0.364 0.238 0.00013
UNIPROTKB|F1MM57 2042 MYH14 "Uncharacterized protein 0.278 0.122 0.262 0.00021
TAIR|locus:2172853 AT5G23890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1728 (613.3 bits), Expect = 5.7e-178, P = 5.7e-178
 Identities = 385/745 (51%), Positives = 500/745 (67%)

Query:   172 ALTSPKLPEPEVVSGTENASPLEGSDS--ILDANLPESASEITGENPIDVEPSSFSN--P 227
             A T P+  E E +  +E+ S L+ S    +LDA   ES++ +  EN    +P S  N  P
Sbjct:   217 AETDPETAESEKII-SESKSLLDSSTEPILLDA---ESSNLVGVENTNSEDPESLLNTEP 272

Query:   228 T---DLGNDGXXXXXXXXXXXXXXXXHAPIEPLAAVISVSS--DTTVEPQILPKGDTETV 282
             T   DL N                  +A    +  +  VSS  D+T +PQI+P  DTET 
Sbjct:   273 TNVSDLENHVNSQKEDSLSSLSGIDAYAASGTVTELPEVSSQLDSTSKPQIVPLNDTETA 332

Query:   283 -ASPSTIKNVEQSEKPLLSGEDSSSSMEVHDLNKNGSSGTSVSPSIFPFSNEKETCDLN- 340
              A+   +  V  + +   + + SS S    D++      +S SP   P S +    +LN 
Sbjct:   333 FATAEELSEVNGTPEYFETSDWSSIS----DIDTTKELESSKSP--VPESTDGSKDELNI 386

Query:   341 ESNXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQVL--PGKVLVPAVVDQVQGQALSALQV 398
              S                             + V+  PGK+LVP   DQ+Q QA +ALQV
Sbjct:   387 YSQDELDDNRMLLEIPSGGSAFSSAGIPAPFMSVIVNPGKILVPVAADQIQCQAFAALQV 446

Query:   399 LKVIEADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDP 458
             LKVIE D +P DLC RREYARWL+SASS L+R+T SKVYPAMYIENVT+LAFDDITPEDP
Sbjct:   447 LKVIETDTQPSDLCTRREYARWLISASSALSRNTTSKVYPAMYIENVTELAFDDITPEDP 506

Query:   459 DFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEAN 518
             DFSSIQGLAEAGLI+SKLS+RDLL++  G   F PES LSRQDL+SWKMALEKRQLPEA+
Sbjct:   507 DFSSIQGLAEAGLIASKLSNRDLLDDVEGTFLFSPESLLSRQDLISWKMALEKRQLPEAD 566

Query:   519 KKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVA 578
             KK+LY+LSGFIDIDKINPDAWP+++ADL+ GEQGI ALAFGCTRLFQP KPVT  QAA+A
Sbjct:   567 KKMLYKLSGFIDIDKINPDAWPSIIADLSTGEQGIAALAFGCTRLFQPHKPVTKGQAAIA 626

Query:   579 LAIGEASDAVNEELQRIXXXXXXXXXXXXXXXLVAEVEKEINESFEKELSMEREKIDVVE 638
             L+ GEASD V+EEL RI               LVAEVEK++N SFEKELSMEREKI+ VE
Sbjct:   627 LSSGEASDIVSEELARIEAESMAEKAVSAHNALVAEVEKDVNASFEKELSMEREKIEAVE 686

Query:   639 KMXXXXXXXXXXXXXXXXVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEIS 698
             KM                 + +AL+KERAA+ESEME+LS+LRR+ EE+LE LMSNK EI+
Sbjct:   687 KMAELAKVELEQLREKREEENLALVKERAAVESEMEVLSRLRRDAEEKLEDLMSNKAEIT 746

Query:   699 YEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARD 758
             +EKER+  LRKEAE E+Q I++LQYELEVERKALSMAR+WAE+EAK+AREQ +ALE AR 
Sbjct:   747 FEKERVFNLRKEAEEESQRISKLQYELEVERKALSMARSWAEEEAKKAREQGRALEEARK 806

Query:   759 RWERQGIKVVVDKDLRE----ESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVS 814
             RWE  G++VVVDKDL+E    E++ +++ +N  ++ SV++T  RA++L+DKLK MA  VS
Sbjct:   807 RWETNGLRVVVDKDLQETSSRETEQSIV-LNEMERSSVEETERRAKTLMDKLKEMAGTVS 865

Query:   815 GKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSN 874
             GKS+E+I T++ KI L+I+ LK++A     RA E++DA I++AKG+  +++Q T +    
Sbjct:   866 GKSREVIFTVMEKIRLWITVLKEYAVNLGKRAGEMRDAAIVRAKGAAADVEQGTVQ---- 921

Query:   875 LTEGAKRVAGDCREGVEKLTQRFKT 899
             +++  K++A +CR+GV K++QRFKT
Sbjct:   922 VSDKVKKMAEECRDGVGKISQRFKT 946
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0009536 "plastid" evidence=IDA
TAIR|locus:2156687 AT5G52410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102375 AT3G25680 "AT3G25680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G4N0Y1 MGG_09571 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|Q6GQ73 hook3 "Protein Hook homolog 3" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
MGI|MGI:2684999 Tmf1 "TATA element modulatory factor 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1B7Q0 HOOK3 "Protein Hook homolog 3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PQQ3 HOOK3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q86VS8 HOOK3 "Protein Hook homolog 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MM57 MYH14 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_XV3389
hypothetical protein (592 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query899
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 9e-10
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-09
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 6e-09
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 7e-09
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 7e-08
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-07
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-07
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 6e-07
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 8e-07
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 9e-07
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-06
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-06
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 2e-06
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 2e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-06
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 3e-06
PRK02224 880 PRK02224, PRK02224, chromosome segregation protein 4e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 8e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-05
pfam13868349 pfam13868, Trichoplein, Tumour suppressor, Mitosta 1e-05
COG1579239 COG1579, COG1579, Zn-ribbon protein, possibly nucl 1e-05
TIGR01843423 TIGR01843, type_I_hlyD, type I secretion membrane 2e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 6e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 7e-05
pfam13868349 pfam13868, Trichoplein, Tumour suppressor, Mitosta 7e-05
PRK12704 520 PRK12704, PRK12704, phosphodiesterase; Provisional 7e-05
COG4942420 COG4942, COG4942, Membrane-bound metallopeptidase 7e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 9e-05
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 9e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-04
pfam05262489 pfam05262, Borrelia_P83, Borrelia P83/100 protein 1e-04
COG2433652 COG2433, COG2433, Uncharacterized conserved protei 1e-04
pfam02463 1162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 2e-04
pfam12128 1198 pfam12128, DUF3584, Protein of unknown function (D 2e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-04
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 3e-04
COG3096 1480 COG3096, MukB, Uncharacterized protein involved in 3e-04
PRK00409782 PRK00409, PRK00409, recombination and DNA strand e 6e-04
pfam13868349 pfam13868, Trichoplein, Tumour suppressor, Mitosta 7e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 8e-04
COG1579239 COG1579, COG1579, Zn-ribbon protein, possibly nucl 8e-04
COG4372 499 COG4372, COG4372, Uncharacterized protein conserve 8e-04
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 9e-04
TIGR02680 1353 TIGR02680, TIGR02680, TIGR02680 family protein 9e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.001
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 0.001
PRK02224 880 PRK02224, PRK02224, chromosome segregation protein 0.001
PRK04778569 PRK04778, PRK04778, septation ring formation regul 0.001
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.002
COG5185622 COG5185, HEC1, Protein involved in chromosome segr 0.002
TIGR03319 514 TIGR03319, RNase_Y, ribonuclease Y 0.002
PTZ00491850 PTZ00491, PTZ00491, major vault protein; Provision 0.002
TIGR01069771 TIGR01069, mutS2, MutS2 family protein 0.002
pfam135141118 pfam13514, AAA_27, AAA domain 0.002
pfam10174 774 pfam10174, Cast, RIM-binding protein of the cytoma 0.002
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.003
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 0.003
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 0.003
COG4372 499 COG4372, COG4372, Uncharacterized protein conserve 0.003
cd01046123 cd01046, Rubrerythrin_like, rubrerythrin-like, dii 0.003
pfam01576 859 pfam01576, Myosin_tail_1, Myosin tail 0.003
PRK02224880 PRK02224, PRK02224, chromosome segregation protein 0.004
pfam00769244 pfam00769, ERM, Ezrin/radixin/moesin family 0.004
TIGR04211198 TIGR04211, SH3_and_anchor, SH3 domain protein 0.004
pfam08317321 pfam08317, Spc7, Spc7 kinetochore protein 0.004
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information 
 Score = 62.4 bits (152), Expect = 9e-10
 Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 17/189 (8%)

Query: 585 SDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEA 644
             A+ ++L R+EAE             +A++ KE+ E  E E+    E+++  E+   EA
Sbjct: 728 ISALRKDLARLEAEVEQ------LEERIAQLSKELTE-LEAEIEELEERLEEAEEELAEA 780

Query: 645 RQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERI 704
             E+E L A+ E  K  L   R A++     L+ L  E     E L S +  I+  + R+
Sbjct: 781 EAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840

Query: 705 NMLRKEAENENQEIARLQY----------ELEVERKALSMARAWAEDEAKRAREQAKALE 754
             L ++ E  +++I  L            ELE E +AL   RA  E+     R + + L 
Sbjct: 841 EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900

Query: 755 GARDRWERQ 763
                 E +
Sbjct: 901 EELRELESK 909

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin Back     alignment and domain information
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein Back     alignment and domain information
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y Back     alignment and domain information
>gnl|CDD|240439 PTZ00491, PTZ00491, major vault protein; Provisional Back     alignment and domain information
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein Back     alignment and domain information
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain Back     alignment and domain information
>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>gnl|CDD|153105 cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain Back     alignment and domain information
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family Back     alignment and domain information
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein Back     alignment and domain information
>gnl|CDD|219791 pfam08317, Spc7, Spc7 kinetochore protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 899
PF0039545 SLH: S-layer homology domain; InterPro: IPR001119 98.94
PF0039545 SLH: S-layer homology domain; InterPro: IPR001119 97.77
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 96.38
KOG0018 1141 consensus Structural maintenance of chromosome pro 96.03
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 95.96
TIGR03185 650 DNA_S_dndD DNA sulfur modification protein DndD. T 95.31
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 95.13
PRK00106 535 hypothetical protein; Provisional 94.86
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 94.77
COG4942420 Membrane-bound metallopeptidase [Cell division and 94.42
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 94.27
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 94.11
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 93.92
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 93.91
PRK00106 535 hypothetical protein; Provisional 93.58
PRK12704 520 phosphodiesterase; Provisional 93.34
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 92.16
TIGR03319 514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 91.82
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 91.13
PF10186302 Atg14: UV radiation resistance protein and autopha 90.89
PRK11637428 AmiB activator; Provisional 90.74
PRK12704 520 phosphodiesterase; Provisional 90.6
TIGR03319 514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 90.22
KOG4302 660 consensus Microtubule-associated protein essential 90.06
PTZ00121 2084 MAEBL; Provisional 89.32
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 89.28
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 89.07
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 88.28
PTZ00121 2084 MAEBL; Provisional 88.27
KOG0933 1174 consensus Structural maintenance of chromosome pro 88.21
TIGR01069771 mutS2 MutS2 family protein. Function of MutS2 is u 88.0
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 87.68
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 87.62
PF12072201 DUF3552: Domain of unknown function (DUF3552); Int 87.14
KOG3850455 consensus Predicted membrane protein [Function unk 87.01
KOG05791187 consensus Ste20-like serine/threonine protein kina 86.41
PF10186302 Atg14: UV radiation resistance protein and autopha 86.25
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 86.18
PF00038312 Filament: Intermediate filament protein; InterPro: 85.36
PF05701522 WEMBL: Weak chloroplast movement under blue light; 85.33
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 85.33
PLN031881320 kinesin-12 family protein; Provisional 85.12
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 85.11
PF12072201 DUF3552: Domain of unknown function (DUF3552); Int 84.47
PRK11637428 AmiB activator; Provisional 84.33
KOG2685421 consensus Cystoskeletal protein Tektin [Cytoskelet 83.84
KOG4673 961 consensus Transcription factor TMF, TATA element m 83.57
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 83.5
TIGR00634563 recN DNA repair protein RecN. All proteins in this 83.43
PRK00409782 recombination and DNA strand exchange inhibitor pr 83.41
PRK02224 880 chromosome segregation protein; Provisional 83.17
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 82.87
PHA02562562 46 endonuclease subunit; Provisional 82.81
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 82.54
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 80.65
KOG0996 1293 consensus Structural maintenance of chromosome pro 80.43
>PF00395 SLH: S-layer homology domain; InterPro: IPR001119 S-layers are paracrystalline mono-layered assemblies of (glyco)proteins which coat the surface of bacteria [, ] Back     alignment and domain information 
Probab=98.94  E-value=7.7e-10  Score=86.74  Aligned_cols=44  Identities=27%  Similarity=0.430  Sum_probs=31.6

Q ss_pred             CccCCCCCCCCh-HHHHHHHHcCCcccCcccccCCCCCCCCCccCCCCcCcHHHHH
Q 002622          449 AFDDITPEDPDF-SSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLV  503 (899)
Q Consensus       449 AF~DVppsDPyf-~yIQAAAEAGIIsGkLSG~~~~s~ddG~~tF~PD~PITRQELA  503 (899)
                      .|+||+..+|+| .+|+.|++.|||.|+.+           ++|+|+++|||+|||
T Consensus         1 ~F~Dv~~~~~~~a~~i~~~~~~gi~~G~~~-----------~~f~P~~~iTR~e~A   45 (45)
T PF00395_consen    1 PFKDVPSISWAYAEAIQWLYQLGIISGYSD-----------GTFNPNDPITRAEAA   45 (45)
T ss_dssp             -BTTB-TTSSSTTHHHHHHHHTTSS---TT-----------S---TTSB-BHHHHH
T ss_pred             CCCCCCCCcHHHHHHHHHHHHcCCcccCCC-----------CeECCCCCcCHHHhC
Confidence            499999999966 99999999999999842           389999999999986

Several S-layer proteins and some other cell wall proteins contain one or more copies of a domain of about 50-60 residues, which has been called SLH (for S-layer homology). Although it was originally proposed that SLH domains bind to peptidoglycan, it is now evident that pyruvylated secondary cell wall polymers (SCWPs), which are either teichoic acids, teichuronic acids, lipoteichoic acids or lipoglycans, serve as the anchoring structures for SLH motifs in the Gram-positive cell wall [, ]. However, the study of S-layer protein SbpA of Bacillus sphaericus revealed that SLH motifs are not sufficient for specific binding to SCWPs. Thus, the molecular basis explaining SLH affinity and specificity of interaction with cell wall polymers are not completely elucidated [].; PDB: 3PYW_A.
>PF00395 SLH: S-layer homology domain; InterPro: IPR001119 S-layers are paracrystalline mono-layered assemblies of (glyco)proteins which coat the surface of bacteria [, ] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PTZ00121 MAEBL; Provisional Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>PTZ00121 MAEBL; Provisional Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR01069 mutS2 MutS2 family protein Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG3850 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PLN03188 kinesin-12 family protein; Provisional Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton] Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>TIGR00634 recN DNA repair protein RecN Back     alignment and domain information
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query899
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-12
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 7e-11
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-09
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-08
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-10
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-07
2zuo_A861 MVP, major vault protein; repeat domains, protein- 2e-09
2zuo_A861 MVP, major vault protein; repeat domains, protein- 3e-08
2zuo_A861 MVP, major vault protein; repeat domains, protein- 1e-06
2zuo_A861 MVP, major vault protein; repeat domains, protein- 1e-04
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 7e-07
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 2e-05
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 7e-06
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 3e-05
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 3e-05
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 2e-04
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 2e-05
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 2e-04
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 2e-04
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 5e-04
1cii_A 602 Colicin IA; bacteriocin, ION channel formation, tr 4e-05
2qag_B427 Septin-6, protein NEDD5; cell cycle, cell division 5e-05
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 1e-04
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 1e-04
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 4e-04
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 1e-04
1f5n_A592 Interferon-induced guanylate-binding protein 1; GB 1e-04
3pyw_A203 S-layer protein SAP; SLH-domains, polysaccharide b 3e-04
2i1j_A575 Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, 4e-04
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 5e-04
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 8e-04
1w1w_A430 Structural maintenance of chromosome 1; cohesin, c 9e-04
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
 Score = 70.2 bits (172), Expect = 2e-12
 Identities = 39/199 (19%), Positives = 90/199 (45%), Gaps = 8/199 (4%)

Query: 583  EASDAVNEELQRIEAE-SAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMA 641
            +    + ++  ++  E    E  VS+ +  +AE E++     + +   E    ++  ++ 
Sbjct: 990  DDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLK 1049

Query: 642  EE--ARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISY 699
            +E  +RQELE+++ + E +   L ++ A +++++  L     + EE+L++ ++    +  
Sbjct: 1050 KEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALA---RLED 1106

Query: 700  EKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDR 759
            E  + N   K+       I+ LQ +LE E+ A + A     D ++        LE   D 
Sbjct: 1107 ETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDT 1166

Query: 760  WERQGIKVVVDKDLREESD 778
               Q  + +   D +++ D
Sbjct: 1167 TATQ--QELRGSDYKDDDD 1183
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256 Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1 Length = 602 Back     alignment and structure
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129 Back     alignment and structure
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 Back     alignment and structure
>3pyw_A S-layer protein SAP; SLH-domains, polysaccharide binding, GST-SLH, cell WALL, STR genomics, PSI-2, protein structure initiative; 1.80A {Bacillus anthracis} Length = 203 Back     alignment and structure
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168 Back     alignment and structure
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 899
d2es4d1280 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) 6e-07
d2es4d1280 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) 5e-04
d2es4d1280 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) 0.002
d1f5na1300 a.114.1.1 (A:284-583) Interferon-induced guanylate 1e-04
d1f5na1300 a.114.1.1 (A:284-583) Interferon-induced guanylate 6e-04
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 Back     information, alignment and structure
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00