Citrus Sinensis ID: 002679

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890---
Protein Sequence
MVLPNLKISLVIFSLFFLILFPVLDFPLIVYSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSCKASKSHKPASRKIWVVIVFPLLGTVALLISLIALFFIFRRRKNALQTLQSSPRGTRGFLSVLTFEGKIVYEEIIRQRMVLMMSTALEKVDKEVYTKLIYLLEKSLQSRNFIRHSQVR
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEccccccEEEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccEEEcccccccccccccEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccEEcccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEcccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccEEEccccccEEEccccccccccccEEcccccccccccHHccccccccEEEccccEEEEEccccccccccccEEEcccccccccccccccccccccEEccccccccccccccHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHccccccccccccccccccccHHHcccccccEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEEccccccEEccccccccccccHHHHcccccccccccccccccccccccccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEccccccEEEEEEcccEEEEEEEEEcccEEEEEHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHccccccccccccccccEEEEEEccccEEEEEEcccccccccccHHHHccccccEEEEccEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccEEccccccccccccEEEcccccccEEccccccccccccEEEccccccccccHHHHcccccccEEEccccccccccHHHHcccccccEEEcccccccccccccccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEccEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHHHcccEEEcccccccccccHHHHHccccEEEEEcccccccccccccccccccHHHHHccccccccccccccccccccccccccHHEEEEHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHccccccHHHccccccccEEEEEEccccEEEEEEEcccccHHHcHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MVLPNLKISLVIFSLFFLIlfpvldfplivysdsTEEVHALLKWKTSlqnhdkgsllpswtlnnatkispcawfgihcnhvgrvnsinltnvglkgtlhdfsfssfphlayldlqvnqifgiippqignisklkyldlssnsfsgtippqignlSMLKFLYLSAnqfsgrippqighLSYIEALHLFKnqlsgpiphevgglsslnelaltsnflkgsippslgnltNLAILYLHnnslsgsipseignlkslsslalgnnklcgsiplflgnltnldtlylrnnsfsssipseignlkslSILElgenrlngsiplslgnltnldtLYLYTNSlsgsipseignlkslsgleladnelsssiphylgnlTNLAAFYLYKnslsgsipseignlkslsnldlsenklsgsiphslgnlTNLAILYLHSNTLLGSIPREIGNLKSLFElqlgdnklsnsishslgnltHMTLLALYDnalsgvipeeLGNLVKLTMLtlsdnqlqgsipnlrnlTNLIRLRLNRNhltcnisesfgihpkltfidlshnnfygqissdwgkcpnlgtfdvsvnniigslppeigdssqlhvIDLSanhiigkipseiGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLdlssnrlsnsiprsLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHlseldlshnflgkeipsqICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIdisynelhgpipnstaFSDALMEALQgneglcgdikgfqsckaskshkpasrkIWVVIVFPLLGTVALLISLIALFFIFRRRKNALQtlqssprgtrgfLSVLTFEGKIVYEEIIRQRMVLMMSTALEKVDKEVYTKLIYLLEKSLQSRNFIRHSQVR
Flexible Loop (DISEMBL)
MVLPNLKISLVIFSLFFLILFPVLDFPLIVYSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSdnqlqgsipnlrNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSCKAskshkpasrkIWVVIVFPLLGTVALLISLIALFFIFRRRKNALqtlqssprgtrgflsvltfeGKIVYEEIIRQRMVLMMSTALEKVDKEVYTKLIYLlekslqsrnfirhsqvr
Low Complexity Region (SEG)
MVLPNlkislvifslfflilfpvlDFPLIVYSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSlgnltnldtlylytnslsGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPnlrnltnlirlrlnrnHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGklssliklilrrNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSCKASKSHKPASRKIWVVIVFPLLGTVallislialffifrrrKNALQTLQSSPRGTRGFLSVLTFEGKIVYEEIIRQRMVLMMSTALEKVDKEVYTKLIYLLEKSLQSRNFIRHSQVR
Disordered region (IsUnstruct)
****NLKISLVIFSLFFLILFPVLDFPLIVYSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSI***********************IPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSC*********SRKIWVVIVFPLLGTVALLISLIALFFIFRRRKNALQTLQS*PRGTRGFLSVLTFEGKIVYEEIIRQRMVLMMSTALEKVDKEVYTKLIYLLEKSL************
Disordered Region (DISOPRED)
*********LVIFSLFFLILFPVLDFPLIV**DSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDI*********************VIVFPLLGTVALLISLIALFFIF***********************LTFEGKIVYEEIIRQRMVLMMSTALEKVDKEVYTKLIYLLEKSLQSRNFIRHSQV*
Disordered Region (DISEMBL)
MVLPNLKISLVIFSLFFLILFPVLDFPLIVYSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQS**********SRKIWVVIVFPLLGTVALLISLIALFFIFRRRKNALQTLQSSPRGTRGFLSVLTFEGKIVYEEIIRQRMVLMMSTALEKVDKEVYTKLIYLLEKSLQSRNFIRHSQVR
Disordered Region (DISPRO)
**LPNLKISLVIFSLFFLILFPVLDFPLIVYSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSCKASKS*KPASRKIWVVIVFPLLGTVALLISLIALFFIFRRRKNALQTLQSSPRGTRGFLSVLTFEGKIVYEEIIRQRMVLMMSTALEKVDKEVYTKLIYLLEKSLQSRNFIRHS***
Transmembrane Helix (TMHMM)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVLPNLKISLVIFSLFFLILFPVLDFPLIVYSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSCKASKSHKPASRKIWVVIVFPLLGTVALLISLIALFFIFRRRKNALQTLQSSPRGTRGFLSVLTFEGKIVYEEIIRQRMVLMMSTALEKVDKEVYTKLIYLLEKSLQSRNFIRHSQVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	893	2.2.26 [Sep-21-2011]
Q9LP24	1120	Probable leucine-rich rep	yes	no	0.877	0.7	0.447	0.0
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.724	0.619	0.429	1e-140
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.876	0.626	0.355	1e-120
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.885	0.631	0.351	1e-119
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.808	0.655	0.386	1e-118
O49318	1124	Probable leucine-rich rep	no	no	0.759	0.603	0.369	1e-109
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.734	0.595	0.387	1e-109
Q9FL28	1173	LRR receptor-like serine/	no	no	0.838	0.638	0.346	1e-106
Q9SSL9	1123	Leucine-rich repeat recep	no	no	0.817	0.650	0.356	1e-106
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.797	0.597	0.361	1e-105

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  637 bits (1642), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/845 (44%), Positives = 524/845 (62%), Gaps = 61/845 (7%)

Query: 37  EVHALLKWKTSLQNHDKGSLLPSWT--LNNATKISPCAWFGIHCNHVGRVNSINLTNVGL 94
           E +ALLKWK++  N  K   L SW    N  T  S  +W+G+ CN  G +  +NLTN G+
Sbjct: 33  EANALLKWKSTFTNSSK---LSSWVHDANTNTSFSCTSWYGVSCNSRGSIEELNLTNTGI 89

Query: 95  KGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNL 154
           +GT  DF F S  +LAY+DL                        S N  SGTIPPQ GNL
Sbjct: 90  EGTFQDFPFISLSNLAYVDL------------------------SMNLLSGTIPPQFGNL 125

Query: 155 SMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNF 214
           S L +  LS N  +G I P +G+L  +  L+L +N L+  IP E+G + S+ +LAL+ N 
Sbjct: 126 SKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNK 185

Query: 215 LKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNL 274
           L GSIP SLGNL NL +LYL+ N L+G IP E+GN++S++ LAL  NKL GSIP  LGNL
Sbjct: 186 LTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNL 245

Query: 275 TNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNS 334
            NL  LYL  N  +  IP EIGN++S++ L L +N+L GSIP SLGNL NL  L L+ N 
Sbjct: 246 KNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNY 305

Query: 335 LSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNL 394
           L+G IP ++GN++S+  LEL++N+L+ SIP  LGNL NL   YLY+N L+G IP E+GN+
Sbjct: 306 LTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNM 365

Query: 395 KSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNK 454
           +S+ +L L+ NKL+GSIP S GNL NL  LYL+ N L G IP+E+GN++S+  L L  NK
Sbjct: 366 ESMIDLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNK 425

Query: 455 LSNSISHSLGNLT------------------------HMTLLALYDNALSGVIPEELGNL 490
           L+ S+  S GN T                        H+T L L  N  +G  PE +   
Sbjct: 426 LTGSVPDSFGNFTKLESLYLRVNHLSGAIPPGVANSSHLTTLILDTNNFTGFFPETVCKG 485

Query: 491 VKLTMLTLSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNN 549
            KL  ++L  N L+G IP +LR+  +LIR R   N  T +I E+FGI+P L FID SHN 
Sbjct: 486 RKLQNISLDYNHLEGPIPKSLRDCKSLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNK 545

Query: 550 FYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKL 609
           F+G+ISS+W K P LG   +S NNI G++P EI + +QL  +DLS N++ G++P  IG L
Sbjct: 546 FHGEISSNWEKSPKLGALIMSNNNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNL 605

Query: 610 SSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQ 669
           ++L +L L  NQL G++P+ L  L  LE LDLSSN  S+ IP++  + +KLH +NLS N+
Sbjct: 606 TNLSRLRLNGNQLSGRVPAGLSFLTNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNK 665

Query: 670 FIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEM 729
           F   IP +L KL  L++LDLSHN L  EIPSQ+ +++SL+ L+LSHNNLS  IP  FE M
Sbjct: 666 FDGSIP-RLSKLTQLTQLDLSHNQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGM 724

Query: 730 NGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDI--KGFQSCKA-SKSHKPAS 786
             L  +DIS N+L GP+P++  F  A  +AL+ N GLC +I  +  + C+   K  K  +
Sbjct: 725 IALTNVDISNNKLEGPLPDTPTFRKATADALEENIGLCSNIPKQRLKPCRELKKPKKNGN 784

Query: 787 RKIWVVIVFPLLGTVALLISLIALFFIFRRRKNALQTLQSSPRGTRGFLSVLTFEGKIVY 846
             +W+++  P+LG V +++S+ A  F +  RK  LQ  +++   T   +S+ + +GK  Y
Sbjct: 785 LVVWILV--PILG-VLVILSICANTFTYCIRKRKLQNGRNTDPETGENMSIFSVDGKFKY 841

Query: 847 EEIIR 851
           ++II 
Sbjct: 842 QDIIE 846

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  499 bits (1285), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 293/682 (42%), Positives = 418/682 (61%), Gaps = 35/682 (5%)

Query: 202 LSSLNELALTSNFLKGSIPP-SLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGN 260
           L S+  L LT+  ++G+       +L NL  + L  N  SG+I    G    L    L  
Sbjct: 92  LGSIIRLNLTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSI 151

Query: 261 NKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLG 320
           N+L G IP  LG+L+NLDTL+L  N  + SIPSEIG L  ++ + + +N L G IP S G
Sbjct: 152 NQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSFG 211

Query: 321 NLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYK 380
           NLT L  LYL+ NSLSGSIPSEIGNL +L  L L  N L+  IP   GNL N+    +++
Sbjct: 212 NLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFE 271

Query: 381 NSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIG 440
           N LSG IP EIGN+ +L  L L  NKL+G IP +LGN+  LA+L+L+ N L GSIP E+G
Sbjct: 272 NQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELG 331

Query: 441 NLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTML---- 496
            ++S+ +L++ +NKL+  +  S G LT +  L L DN LSG IP  + N  +LT+L    
Sbjct: 332 EMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANSTELTVLQLDT 391

Query: 497 --------------------TLSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTCNISESFG 535
                               TL DN  +G +P +LR+  +LIR+R   N  + +ISE+FG
Sbjct: 392 NNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISEAFG 451

Query: 536 IHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSA 595
           ++P L FIDLS+NNF+GQ+S++W +   L  F +S N+I G++PPEI + +QL  +DLS+
Sbjct: 452 VYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSS 511

Query: 596 NHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLG 655
           N I G++P  I  ++ + KL L  N+L G++PS +  L  LEYLDLSSNR S+ IP +L 
Sbjct: 512 NRITGELPESISNINRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLN 571

Query: 656 NLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSH 715
           NL +L+Y+NLS N   Q IP  L KL  L  LDLS+N L  EI SQ  ++++LE L+LSH
Sbjct: 572 NLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQFRSLQNLERLDLSH 631

Query: 716 NNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDI---KG 772
           NNLS  IP  F++M  L ++D+S+N L GPIP++ AF +A  +A +GN+ LCG +   +G
Sbjct: 632 NNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNAPPDAFEGNKDLCGSVNTTQG 691

Query: 773 FQSC---KASKSHKPASRKIWVVIVFPLLGTVALLISLIALFFIFRRRKNALQTLQSSPR 829
            + C    + KSHK   R + + I+ P++G + +L     +F  FR+R   ++    S  
Sbjct: 692 LKPCSITSSKKSHK--DRNLIIYILVPIIGAIIILSVCAGIFICFRKRTKQIEEHTDSES 749

Query: 830 GTRGFLSVLTFEGKIVYEEIIR 851
           G    LS+ +F+GK+ Y+EII+
Sbjct: 750 GGET-LSIFSFDGKVRYQEIIK 770

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  434 bits (1116), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 320/900 (35%), Positives = 454/900 (50%), Gaps = 117/900 (13%)

Query: 21  FPVLDFPLIVYSDSTEEVHALLKWKTSL-QNHDKGSLLPSWTLNNATKISPCAWFGIHCN 79
           F  L  P I+ +D    +  LL+ K SL  N  +   L  W   N+  I+ C+W G+ C+
Sbjct: 14  FSGLGQPGIINND----LQTLLEVKKSLVTNPQEDDPLRQW---NSDNINYCSWTGVTCD 66

Query: 80  HVG--RVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLD 137
           + G  RV ++NLT +GL G++  + F  F +L +LDL  N + G IP  + N++ L+ L 
Sbjct: 67  NTGLFRVIALNLTGLGLTGSISPW-FGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLF 125

Query: 138 LSSNSFSGTIPPQIG------------------------NLSMLKFLYLSANQFSGRIPP 173
           L SN  +G IP Q+G                        NL  L+ L L++ + +G IP 
Sbjct: 126 LFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPS 185

Query: 174 QIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILY 233
           Q+G L  +++L L  N L GPIP E+G  S L       N L G+IP  LG L NL IL 
Sbjct: 186 QLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILN 245

Query: 234 LHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPS 293
           L NNSL+G IPS++G +  L  L+L  N+L G IP  L +L NL TL L  N+ +  IP 
Sbjct: 246 LANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPE 305

Query: 294 EIGNLKSLSILELGENRLNGSIPLSL-GNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGL 352
           E  N+  L  L L  N L+GS+P S+  N TNL+ L L    LSG IP E+   +SL  L
Sbjct: 306 EFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQL 365

Query: 353 ELADNELSSSIPHYL------------------------GNLTNL--------------- 373
           +L++N L+ SIP  L                         NLTNL               
Sbjct: 366 DLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLP 425

Query: 374 ---------AAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAIL 424
                       +LY+N  SG IP EIGN  SL  +D+  N   G IP S+G L  L +L
Sbjct: 426 KEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLL 485

Query: 425 YLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIP 484
           +L  N L+G +P  +GN   L  L L DN+LS SI  S G L  +  L LY+N+L G +P
Sbjct: 486 HLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLP 545

Query: 485 EELGNLVKLTMLTLSDNQLQGSIP------------------------NLRNLTNLIRLR 520
           + L +L  LT + LS N+L G+I                          L N  NL RLR
Sbjct: 546 DSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLR 605

Query: 521 LNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPP 580
           L +N LT  I  + G   +L+ +D+S N   G I      C  L   D++ N + G +PP
Sbjct: 606 LGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPP 665

Query: 581 EIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLD 640
            +G  SQL  + LS+N  +  +P+E+   + L+ L L  N L G +P E+G+L  L  L+
Sbjct: 666 WLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLN 725

Query: 641 LSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHL-SELDLSHNFLGKEIP 699
           L  N+ S S+P+++G L KL+ L LS N    EIP+++ +L  L S LDLS+N    +IP
Sbjct: 726 LDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIP 785

Query: 700 SQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEA 759
           S I  +  LE L+LSHN L+  +P    +M  L Y+++S+N L G +     FS    ++
Sbjct: 786 STIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKL--KKQFSRWPADS 843

Query: 760 LQGNEGLCGDIKGFQSCKASKSHKP----ASRKIWVVIVFPLLGTVALLISLIALFFIFR 815
             GN GLCG       C   +S+      ++R + ++     L  + L+I +IALFF  R
Sbjct: 844 FLGNTGLCG--SPLSRCNRVRSNNKQQGLSARSVVIISAISALTAIGLMILVIALFFKQR 901

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  430 bits (1105), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 318/904 (35%), Positives = 445/904 (49%), Gaps = 113/904 (12%)

Query: 11  VIFSLFFLILFPVLDFPLIVYSDSTEEVHALLKWKTS-LQNHDKGSLLPSWTLNNATKIS 69
           V+ +LFFL     L        D   ++  LL+ K S + N  +  +L  W   N+   S
Sbjct: 6   VLLALFFLCFSSGLGSGQPGQRD---DLQTLLELKNSFITNPKEEDVLRDW---NSGSPS 59

Query: 70  PCAWFGIHCNHVGR-VNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFG------- 121
            C W G+ C   GR +  +NL+ +GL G++   S   F +L ++DL  N++ G       
Sbjct: 60  YCNWTGVTCG--GREIIGLNLSGLGLTGSISP-SIGRFNNLIHIDLSSNRLVGPIPTTLS 116

Query: 122 ------------------IIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLS 163
                              IP Q+G++  LK L L  N  +GTIP   GNL  L+ L L+
Sbjct: 117 NLSSSLESLHLFSNLLSGDIPSQLGSLVNLKSLKLGDNELNGTIPETFGNLVNLQMLALA 176

Query: 164 ANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSL 223
           + + +G IP + G L  ++ L L  N+L GPIP E+G  +SL   A   N L GS+P  L
Sbjct: 177 SCRLTGLIPSRFGRLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAEL 236

Query: 224 GNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLR 283
             L NL  L L +NS SG IPS++G+L S+  L L  N+L G IP  L  L NL TL L 
Sbjct: 237 NRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLS 296

Query: 284 NNSF-------------------------------------------------SSSIPSE 294
           +N+                                                  S  IP+E
Sbjct: 297 SNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAE 356

Query: 295 IGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLEL 354
           I N +SL +L+L  N L G IP SL  L  L  LYL  NSL G++ S I NL +L    L
Sbjct: 357 ISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTL 416

Query: 355 ADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHS 414
             N L   +P  +G L  L   YLY+N  SG +P EIGN   L  +D   N+LSG IP S
Sbjct: 417 YHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSS 476

Query: 415 LGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLAL 474
           +G L +L  L+L  N L+G+IP  +GN   +  + L DN+LS SI  S G LT + L  +
Sbjct: 477 IGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMI 536

Query: 475 YDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP------------------------NL 510
           Y+N+L G +P+ L NL  LT +  S N+  GSI                          L
Sbjct: 537 YNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLEL 596

Query: 511 RNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVS 570
              TNL RLRL +N  T  I  +FG   +L+ +D+S N+  G I  + G C  L   D++
Sbjct: 597 GKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLN 656

Query: 571 VNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSEL 630
            N + G +P  +G    L  + LS+N  +G +P+EI  L++++ L L  N L G +P E+
Sbjct: 657 NNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEI 716

Query: 631 GSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHL-SELDL 689
           G+L  L  L+L  N+LS  +P ++G L KL  L LS N    EIP+++ +L  L S LDL
Sbjct: 717 GNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDL 776

Query: 690 SHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS 749
           S+N     IPS I  +  LE L+LSHN L   +P    +M  L Y+++SYN L G +   
Sbjct: 777 SYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKL--K 834

Query: 750 TAFSDALMEALQGNEGLCGDIKGFQSCKASKSHKPASRKIWVVI-VFPLLGTVALLISLI 808
             FS    +A  GN GLCG      +   SK+ +  S K  V+I     L  +AL++ +I
Sbjct: 835 KQFSRWQADAFVGNAGLCGSPLSHCNRAGSKNQRSLSPKTVVIISAISSLAAIALMVLVI 894

Query: 809 ALFF 812
            LFF
Sbjct: 895 ILFF 898

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  425 bits (1093), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 304/787 (38%), Positives = 419/787 (53%), Gaps = 65/787 (8%)

Query: 52  DKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAY 111
           D    L +W  N++    PC W G+ C++                      +SS P +  
Sbjct: 43  DAKQNLRNWNSNDSV---PCGWTGVMCSN----------------------YSSDPEVLS 77

Query: 112 LDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRI 171
           L+L    + G + P IG +  LK LDLS N  SG IP +IGN S L+ L L+ NQF G I
Sbjct: 78  LNLSSMVLSGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEI 137

Query: 172 PPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAI 231
           P +IG L  +E L ++ N++SG +P E+G L SL++L   SN + G +P S+GNL  L  
Sbjct: 138 PVEIGKLVSLENLIIYNNRISGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTS 197

Query: 232 LYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSI 291
                N +SGS+PSEIG  +SL  L L  N+L G +P  +G L  L  + L  N FS  I
Sbjct: 198 FRAGQNMISGSLPSEIGGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFI 257

Query: 292 PSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSG 351
           P EI N  SL  L L +N+L G IP  LG+L +L+ LYLY N L+G+IP EIGNL     
Sbjct: 258 PREISNCTSLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIE 317

Query: 352 LELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSI 411
           ++ ++N L+  IP  LGN+  L   YL++N L+G+IP E+  LK+LS LDLS N L+G I
Sbjct: 318 IDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPI 377

Query: 412 PHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTL 471
           P     L  L +L L  N+L G+IP ++G    L+ L + DN LS  I   L   ++M +
Sbjct: 378 PLGFQYLRGLFMLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMII 437

Query: 472 LALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNIS 531
           L L  N LSG IP                         +     L++LRL RN+L     
Sbjct: 438 LNLGTNNLSGNIPT-----------------------GITTCKTLVQLRLARNNLVGRFP 474

Query: 532 ESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVI 591
            +      +T I+L  N F G I  + G C  L    ++ N   G LP EIG  SQL  +
Sbjct: 475 SNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREIGMLSQLGTL 534

Query: 592 DLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIP 651
           ++S+N + G++PSEI     L +L +  N   G LPSE+GSL QLE L LS+N LS +IP
Sbjct: 535 NISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIP 594

Query: 652 RSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLS-ELDLSHNFLGKEIPSQICNMRSLEM 710
            +LGNL +L  L +  N F   IP +L  L  L   L+LS+N L  EIP ++ N+  LE 
Sbjct: 595 VALGNLSRLTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEF 654

Query: 711 LNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGD- 769
           L L++NNLS  IP  F  ++ LL  + SYN L GPIP      +  M +  GNEGLCG  
Sbjct: 655 LLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIP---LLRNISMSSFIGNEGLCGPP 711

Query: 770 ----IKGFQSCKASKSHKPA---SRKIWVVIVFPLLGTVALLISLIALFFIFRRRKNALQ 822
               I+      +  + KP    S KI + I   ++G V+L+  LIAL     RR   ++
Sbjct: 712 LNQCIQTQPFAPSQSTGKPGGMRSSKI-IAITAAVIGGVSLM--LIALIVYLMRR--PVR 766

Query: 823 TLQSSPR 829
           T+ SS +
Sbjct: 767 TVASSAQ 773

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  397 bits (1020), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 267/723 (36%), Positives = 384/723 (53%), Gaps = 45/723 (6%)

Query: 64  NATKISPCAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGII 123
           N    +PC W G++C+  G  +S N   V                   LDL    + GI+
Sbjct: 59  NGIDETPCNWIGVNCSSQGSSSSSNSLVV-----------------TSLDLSSMNLSGIV 101

Query: 124 PPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEA 183
            P IG +  L YL+L+ N+ +G IP +IGN S L+ ++L+ NQF G IP +I  LS + +
Sbjct: 102 SPSIGGLVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQFGGSIPVEINKLSQLRS 161

Query: 184 LHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSI 243
            ++  N+LSGP+P E+G L +L EL   +N L G +P SLGNL  L       N  SG+I
Sbjct: 162 FNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTTFRAGQNDFSGNI 221

Query: 244 PSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSI 303
           P+EIG   +L  L L  N + G +P  +G L  L  + L  N FS  IP +IGNL SL  
Sbjct: 222 PTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFIPKDIGNLTSLET 281

Query: 304 LELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSI 363
           L L  N L G IP  +GN+ +L  LYLY N L+G+IP E+G L  +  ++ ++N LS  I
Sbjct: 282 LALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLSGEI 341

Query: 364 PHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAI 423
           P  L  ++ L   YL++N L+G IP+E+  L++L+ LDLS N L+G IP    NLT++  
Sbjct: 342 PVELSKISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQ 401

Query: 424 LYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVI 483
           L L  N+L G IP+ +G    L+ +   +N+LS  I   +   +++ LL L  N + G I
Sbjct: 402 LQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSNLILLNLGSNRIFGNI 461

Query: 484 PEELGNLVKLTMLTLSDNQLQGSIPN-LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTF 542
           P  +     L  L +  N+L G  P  L  L NL  + L++N  +  +    G   KL  
Sbjct: 462 PPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQR 521

Query: 543 IDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKI 602
           + L+ N F   + ++  K  NL TF+VS N++ G +P EI +   L  +DLS N  IG +
Sbjct: 522 LHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSL 581

Query: 603 PSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHY 662
           P E                        LGSL QLE L LS NR S +IP ++GNL  L  
Sbjct: 582 PPE------------------------LGSLHQLEILRLSENRFSGNIPFTIGNLTHLTE 617

Query: 663 LNLSTNQFIQEIPIKLEKLIHLS-ELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDF 721
           L +  N F   IP +L  L  L   ++LS+N    EIP +I N+  L  L+L++N+LS  
Sbjct: 618 LQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGE 677

Query: 722 IPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSCKASKS 781
           IP  FE ++ LL  + SYN L G +P++  F +  + +  GN+GLCG     +SC  S S
Sbjct: 678 IPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCGG--HLRSCDPSHS 735

Query: 782 HKP 784
             P
Sbjct: 736 SWP 738

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  396 bits (1017), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 266/686 (38%), Positives = 360/686 (52%), Gaps = 30/686 (4%)

Query: 15  LFFLILFPVLDFPLIVYSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWF 74
           + FL +  +  F  I+     EE   LL++K  L  +D    L SW   N    +PC W 
Sbjct: 5   ICFLAIVILCSFSFILVRSLNEEGRVLLEFKAFL--NDSNGYLASW---NQLDSNPCNWT 59

Query: 75  GIHCNHVGRVNSINLTNVGLKGTLHDF--------------SFSSFP---------HLAY 111
           GI C H+  V S++L  + L GTL                 +F S P          L  
Sbjct: 60  GIACTHLRTVTSVDLNGMNLSGTLSPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEV 119

Query: 112 LDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRI 171
           LDL  N+  G+IP Q+  I  LK L L  N   G+IP QIGNLS L+ L + +N  +G I
Sbjct: 120 LDLCTNRFHGVIPIQLTMIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVI 179

Query: 172 PPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAI 231
           PP +  L  +  +   +N  SG IP E+ G  SL  L L  N L+GS+P  L  L NL  
Sbjct: 180 PPSMAKLRQLRIIRAGRNGFSGVIPSEISGCESLKVLGLAENLLEGSLPKQLEKLQNLTD 239

Query: 232 LYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSI 291
           L L  N LSG IP  +GN+  L  LAL  N   GSIP  +G LT +  LYL  N  +  I
Sbjct: 240 LILWQNRLSGEIPPSVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEI 299

Query: 292 PSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSG 351
           P EIGNL   + ++  EN+L G IP   G++ NL  L+L+ N L G IP E+G L  L  
Sbjct: 300 PREIGNLIDAAEIDFSENQLTGFIPKEFGHILNLKLLHLFENILLGPIPRELGELTLLEK 359

Query: 352 LELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSI 411
           L+L+ N L+ +IP  L  L  L    L+ N L G IP  IG   + S LD+S N LSG I
Sbjct: 360 LDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPI 419

Query: 412 PHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTL 471
           P        L +L L SN L G+IPR++   KSL +L LGDN+L+ S+   L NL ++T 
Sbjct: 420 PAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTA 479

Query: 472 LALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSI-PNLRNLTNLIRLRLNRNHLTCNI 530
           L L+ N LSG I  +LG L  L  L L++N   G I P + NLT ++   ++ N LT +I
Sbjct: 480 LELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHI 539

Query: 531 SESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHV 590
            +  G    +  +DLS N F G I+ + G+   L    +S N + G +P   GD ++L  
Sbjct: 540 PKELGSCVTIQRLDLSGNKFSGYIAQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRLME 599

Query: 591 IDLSANHIIGKIPSEIGKLSSL-IKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNS 649
           + L  N +   IP E+GKL+SL I L +  N L G +P  LG+L  LE L L+ N+LS  
Sbjct: 600 LQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGE 659

Query: 650 IPRSLGNLVKLHYLNLSTNQFIQEIP 675
           IP S+GNL+ L   N+S N  +  +P
Sbjct: 660 IPASIGNLMSLLICNISNNNLVGTVP 685

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  388 bits (997), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 289/833 (34%), Positives = 405/833 (48%), Gaps = 84/833 (10%)

Query: 16  FFLILFPVLDFPLIVYSDSTE-EVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWF 74
           F ++      F + +   S E E+ AL  +K  + N   G +L  WT+  + +   C W 
Sbjct: 8   FLILTLTFFFFGIALAKQSFEPEIEALKSFKNGISNDPLG-VLSDWTIIGSLR--HCNWT 64

Query: 75  GIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLK 134
           GI C+  G V S++L                            Q+ G++ P I N++ L+
Sbjct: 65  GITCDSTGHVVSVSLLE-------------------------KQLEGVLSPAIANLTYLQ 99

Query: 135 YLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGP 194
            LDL+SNSF+G IP +IG L+ L  L L  N FSG IP  I  L  I  L L  N LSG 
Sbjct: 100 VLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGD 159

Query: 195 IPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLS 254
           +P E+   SSL  +    N L G IP  LG+L +L +     N L+GSIP  IG L +L+
Sbjct: 160 VPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLT 219

Query: 255 SLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGS 314
            L L  N+L G IP   GNL NL +L L  N     IP+EIGN  SL  LEL +N+L G 
Sbjct: 220 DLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGK 279

Query: 315 IPLSLGNLTNLDTLYLYTNSLSGSIPS------------------------EIGNLKSLS 350
           IP  LGNL  L  L +Y N L+ SIPS                        EIG L+SL 
Sbjct: 280 IPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLESLE 339

Query: 351 GLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGS 410
            L L  N  +   P  + NL NL    +  N++SG +P+++G L +L NL   +N L+G 
Sbjct: 340 VLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGP 399

Query: 411 IPHSLGNLTNLAILYLHSNTLLGSIPREIG-----------------------NLKSLFE 447
           IP S+ N T L +L L  N + G IPR  G                       N  +L  
Sbjct: 400 IPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLET 459

Query: 448 LQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSI 507
           L + DN L+ ++   +G L  + +L +  N+L+G IP E+GNL  L +L L  N   G I
Sbjct: 460 LSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRI 519

Query: 508 P-NLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGT 566
           P  + NLT L  LR+  N L   I E       L+ +DLS+N F GQI + + K  +L  
Sbjct: 520 PREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTY 579

Query: 567 FDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLIL----RRNQL 622
             +  N   GS+P  +   S L+  D+S N + G IP E+  L+SL  + L      N L
Sbjct: 580 LSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGEL--LASLKNMQLYLNFSNNLL 637

Query: 623 FGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKL 681
            G +P ELG L  ++ +DLS+N  S SIPRSL     +  L+ S N     IP ++ + +
Sbjct: 638 TGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGM 697

Query: 682 IHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNE 741
             +  L+LS N    EIP    NM  L  L+LS NNL+  IP     ++ L ++ ++ N 
Sbjct: 698 DMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNN 757

Query: 742 LHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSCKASKSHKPASRKIWVVIV 794
           L G +P S  F +     L GN  LCG  K  + C   +     S++  V+++
Sbjct: 758 LKGHVPESGVFKNINASDLMGNTDLCGSKKPLKPCTIKQKSSHFSKRTRVILI 810

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SSL9|PEPR1_ARATH Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1

 Score =  386 bits (991), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 276/775 (35%), Positives = 404/775 (52%), Gaps = 45/775 (5%)

Query: 59  SWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQ 118
           +W +N A++ +PC WFGI C+    V S+N T   + G L          L  LDL  N 
Sbjct: 53  TWKIN-ASEATPCNWFGITCDDSKNVASLNFTRSRVSGQLGP-EIGELKSLQILDLSTNN 110

Query: 119 IFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHL 178
             G IP  +GN +KL  LDLS N FS  IP  + +L  L+ LYL  N  +G +P  +  +
Sbjct: 111 FSGTIPSTLGNCTKLATLDLSENGFSDKIPDTLDSLKRLEVLYLYINFLTGELPESLFRI 170

Query: 179 SYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNS 238
             ++ L+L  N L+GPIP  +G    L EL++ +N   G+IP S+GN ++L ILYLH N 
Sbjct: 171 PKLQVLYLDYNNLTGPIPQSIGDAKELVELSMYANQFSGNIPESIGNSSSLQILYLHRNK 230

Query: 239 LSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNL 298
           L GS+P  +  L +L++L +GNN L G +     N  NL TL L  N F   +P  +GN 
Sbjct: 231 LVGSLPESLNLLGNLTTLFVGNNSLQGPVRFGSPNCKNLLTLDLSYNEFEGGVPPALGNC 290

Query: 299 KSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNE 358
            SL  L +    L+G+IP SLG L NL  L L  N LSGSIP+E+GN  SL+ L+L DN+
Sbjct: 291 SSLDALVIVSGNLSGTIPSSLGMLKNLTILNLSENRLSGSIPAELGNCSSLNLLKLNDNQ 350

Query: 359 LSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNL 418
           L   IP  LG L  L +  L++N  SG IP EI   +SL+ L + +N L+G +P  +  +
Sbjct: 351 LVGGIPSALGKLRKLESLELFENRFSGEIPIEIWKSQSLTQLLVYQNNLTGELPVEMTEM 410

Query: 419 TNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNA 478
             L I  L +N+  G+IP  +G   SL E+    NKL+  I  +L +   + +L L  N 
Sbjct: 411 KKLKIATLFNNSFYGAIPPGLGVNSSLEEVDFIGNKLTGEIPPNLCHGRKLRILNLGSNL 470

Query: 479 LSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHP 538
           L G IP  +G+   +    L +N L G +P             +++H             
Sbjct: 471 LHGTIPASIGHCKTIRRFILRENNLSGLLP-----------EFSQDH------------- 506

Query: 539 KLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHI 598
            L+F+D + NNF G I    G C NL + ++S N   G +PP++G+   L  ++LS N +
Sbjct: 507 SLSFLDFNSNNFEGPIPGSLGSCKNLSSINLSRNRFTGQIPPQLGNLQNLGYMNLSRNLL 566

Query: 599 IGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLV 658
            G +P+++    SL +  +  N L G +PS   +   L  L LS NR S  IP+ L  L 
Sbjct: 567 EGSLPAQLSNCVSLERFDVGFNSLNGSVPSNFSNWKGLTTLVLSENRFSGGIPQFLPELK 626

Query: 659 KLHYLNLSTNQFIQEIPIK---LEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSH 715
           KL  L ++ N F  EIP     +E LI+  +LDLS N L  EIP+++ ++  L  LN+S+
Sbjct: 627 KLSTLQIARNAFGGEIPSSIGLIEDLIY--DLDLSGNGLTGEIPAKLGDLIKLTRLNISN 684

Query: 716 NNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALME--ALQGNEGLC------ 767
           NNL+  +    + +  LL++D+S N+  GPIP++      L E  +  GN  LC      
Sbjct: 685 NNLTGSL-SVLKGLTSLLHVDVSNNQFTGPIPDNLE-GQLLSEPSSFSGNPNLCIPHSFS 742

Query: 768 ---GDIKGFQSCK-ASKSHKPASRKIWVVIVFPLLGTVALLISLIALFFIFRRRK 818
                    + CK  SKS K       +V++  L   + L++ L  +F   RRRK
Sbjct: 743 ASNNSRSALKYCKDQSKSRKSGLSTWQIVLIAVLSSLLVLVVVLALVFICLRRRK 797

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  383 bits (983), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 287/793 (36%), Positives = 397/793 (50%), Gaps = 81/793 (10%)

Query: 67  KISPCAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQ 126
           KI P  W      ++  + +++L+   L G L     S  P L YLDL  N   G +PP 
Sbjct: 104 KIPPEIW------NLKHLQTLDLSGNSLTGLLPRL-LSELPQLLYLDLSDNHFSGSLPPS 156

Query: 127 IG-NISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALH 185
              ++  L  LD+S+NS SG IPP+IG LS L  LY+  N FSG+IP +IG++S ++   
Sbjct: 157 FFISLPALSSLDVSNNSLSGEIPPEIGKLSNLSNLYMGLNSFSGQIPSEIGNISLLKNFA 216

Query: 186 LFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPS 245
                 +GP+P E+  L  L +L L+ N LK SIP S G L NL+IL L +  L G IP 
Sbjct: 217 APSCFFNGPLPKEISKLKHLAKLDLSYNPLKCSIPKSFGELHNLSILNLVSAELIGLIPP 276

Query: 246 EIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILE 305
           E+GN KSL SL L  N L G +PL L  +  L T     N  S S+PS +G  K L  L 
Sbjct: 277 ELGNCKSLKSLMLSFNSLSGPLPLELSEIPLL-TFSAERNQLSGSLPSWMGKWKVLDSLL 335

Query: 306 LGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPH 365
           L  NR +G IP  + +   L  L L +N LSGSIP E+    SL  ++L+ N LS +I  
Sbjct: 336 LANNRFSGEIPHEIEDCPMLKHLSLASNLLSGSIPRELCGSGSLEAIDLSGNLLSGTIEE 395

Query: 366 YLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILY 425
                ++L    L  N ++GSIP ++  L  L  LDL  N  +G IP SL   TNL    
Sbjct: 396 VFDGCSSLGELLLTNNQINGSIPEDLWKLP-LMALDLDSNNFTGEIPKSLWKSTNLMEFT 454

Query: 426 LHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPE 485
              N L G +P EIGN  SL  L L DN+L+  I   +G LT +++L L  N   G IP 
Sbjct: 455 ASYNRLEGYLPAEIGNAASLKRLVLSDNQLTGEIPREIGKLTSLSVLNLNANMFQGKIPV 514

Query: 486 ELGNLVKLTMLTLSDNQLQGSIPN-LRNLTNLIRLRLNRNHLTCNISESFGIH------P 538
           ELG+   LT L L  N LQG IP+ +  L  L  L L+ N+L+ +I      +      P
Sbjct: 515 ELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMP 574

Query: 539 KLTFI------DLSHNNFYGQISSDWGKC------------------------PNLGTFD 568
            L+F+      DLS+N   G I  + G+C                         NL   D
Sbjct: 575 DLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSRLTNLTILD 634

Query: 569 VSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPS 628
           +S N + GS+P E+G+S +L  ++L+ N + G IP   G L SL+KL L +N+L G +P+
Sbjct: 635 LSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPA 694

Query: 629 ELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELD 688
            LG+L +L ++DLS N LS  +   L  + KL  L +  N+F  EIP +L  L  L  LD
Sbjct: 695 SLGNLKELTHMDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLD 754

Query: 689 LSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPN 748
           +S N L  EIP++IC + +LE LNL+ NN                        L G +P+
Sbjct: 755 VSENLLSGEIPTKICGLPNLEFLNLAKNN------------------------LRGEVPS 790

Query: 749 STAFSDALMEALQGNEGLCGDIKGFQSCKASKSHKPASRKIWVVIVFPLLGTVALLISLI 808
                D     L GN+ LCG + G   CK   +     R  W +        + L  ++I
Sbjct: 791 DGVCQDPSKALLSGNKELCGRVVG-SDCKIEGTKL---RSAWGI------AGLMLGFTII 840

Query: 809 ALFFIFRRRKNAL 821
              F+F  R+ A+
Sbjct: 841 VFVFVFSLRRWAM 853

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	893
297846638	1123	hypothetical protein ARALYDRAFT_473694 [	0.881	0.700	0.459	0.0
15219699	1120	putative leucine-rich repeat receptor-li	0.877	0.7	0.447	1e-179
357439013	1131	Receptor protein kinase-like protein [Me	0.900	0.710	0.424	1e-175
356577797	1204	PREDICTED: probable LRR receptor-like se	0.908	0.673	0.427	1e-175
224589418	845	leucine-rich repeat receptor-like protei	0.845	0.893	0.453	1e-174
224145445	1163	predicted protein [Populus trichocarpa]	0.885	0.680	0.465	1e-172
357439001	1150	Receptor protein kinase-like protein [Me	0.930	0.722	0.426	1e-167
357439011	1191	Receptor protein kinase-like protein [Me	0.930	0.697	0.426	1e-167
224146638	1188	predicted protein [Populus trichocarpa]	0.891	0.670	0.431	1e-165
357439017	1157	Receptor-like protein kinase [Medicago t	0.916	0.707	0.414	1e-163

>gi|297846638|ref|XP_002891200.1| hypothetical protein ARALYDRAFT_473694 [Arabidopsis lyrata subsp. lyrata] gi|297337042|gb|EFH67459.1| hypothetical protein ARALYDRAFT_473694 [Arabidopsis lyrata subsp. lyrata]

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/845 (45%), Positives = 528/845 (62%), Gaps = 58/845 (6%)

Query: 37  EVHALLKWKTSLQNHDKGSLLPSWT--LNNATKISPCAWFGIHCNHVGRVNSINLTNVGL 94
           E +ALLKWK++  N    S L SW    N     S  +W+G+ CN  G +  +NLT+  +
Sbjct: 33  EANALLKWKSTFTNQSHSSKLSSWVNDANTNPSFSCTSWYGVFCNSRGSIEKLNLTDNAI 92

Query: 95  KGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNL 154
           +GT  DF FSS P+LA +DL +N+                        FSGTIPPQ GNL
Sbjct: 93  EGTFQDFPFSSLPNLASIDLSMNR------------------------FSGTIPPQFGNL 128

Query: 155 SMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNF 214
           S L +  LS N  +  IPP +G+L  +  L L  N L+G IP ++G + S+  L L+ N 
Sbjct: 129 SKLIYFDLSTNHLTREIPPSLGNLKNLTVLDLHHNYLTGVIPPDLGNMESMTYLELSHNK 188

Query: 215 LKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNL 274
           L GSIP SLGNL NL +LYL+ N L+G IP E+GN++S+  L L  NKL GSIP  LGNL
Sbjct: 189 LTGSIPSSLGNLKNLTVLYLYQNYLTGVIPPELGNMESMIDLELSTNKLTGSIPSSLGNL 248

Query: 275 TNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNS 334
            NL  LYL +N  +  IP E+GN++S+  LEL +N+L GSIP SLGNL NL  LYLY N 
Sbjct: 249 KNLTVLYLHHNYLTGVIPPELGNMESMIDLELSDNKLTGSIPSSLGNLKNLTVLYLYKNY 308

Query: 335 LSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNL 394
           L+G IP E+GN++S++ L+L++N+L+ SIP  LGNL NL   YL+ N L+G IP E+GNL
Sbjct: 309 LTGVIPPELGNMESMTYLDLSENKLTGSIPSSLGNLKNLTVLYLHHNYLTGVIPPELGNL 368

Query: 395 KSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNK 454
           +S+ +L+LS+NKL+GSIP SLGNL NL +LYLH N L G IP E+GN++S+ +L L  N 
Sbjct: 369 ESMIDLELSDNKLTGSIPSSLGNLKNLTVLYLHHNYLTGVIPPELGNMESMIDLALSQNN 428

Query: 455 LSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTML------------------ 496
           L+ SI  S GN T +  L L DN LSG IP  + N  +LT L                  
Sbjct: 429 LTGSIPSSFGNFTKLESLYLRDNHLSGTIPRGVANSSELTELLLDINNFTGFLPENICKG 488

Query: 497 ------TLSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNN 549
                 +L  N L+G IP +LR+  +LIR +   N    NISE+FG++P L FIDLSHN 
Sbjct: 489 GKLQNFSLDYNHLEGHIPKSLRDCKSLIRAKFVGNKFIGNISEAFGVYPDLDFIDLSHNK 548

Query: 550 FYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKL 609
           F G+ISS+W K P LG   +S NNI G++PPEI +  QL  +DLS N++ G++P  IG L
Sbjct: 549 FNGEISSNWQKSPKLGALIMSNNNITGAIPPEIWNMKQLGELDLSTNNLTGELPEAIGNL 608

Query: 610 SSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQ 669
           + L KL+L  N+L G++P+ L  L  LE LDLSSNR S+ IP++  + +KLH +NLS N 
Sbjct: 609 TGLSKLLLNGNKLSGRVPTGLSFLTNLESLDLSSNRFSSQIPQTFDSFLKLHEMNLSKNN 668

Query: 670 FIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEM 729
           F   IP  L KL  L+ LDLSHN L  EIPSQ+ +++SL+ LNLSHNNLS FIP  FE M
Sbjct: 669 FDGRIP-GLTKLTQLTHLDLSHNQLDGEIPSQLSSLQSLDKLNLSHNNLSGFIPTTFESM 727

Query: 730 NGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDI--KGFQSCKA-SKSHKPAS 786
             L +IDIS N+L GP+P++ AF +A  +AL+GN GLC +I  +  +SC+   K  K  +
Sbjct: 728 KALTFIDISNNKLEGPLPDNPAFQNATSDALEGNRGLCSNIPKQRLKSCRGFQKPKKNGN 787

Query: 787 RKIWVVIVFPLLGTVALLISLIALFFIFRRRKNALQTLQSSPRGTRGFLSVLTFEGKIVY 846
             +W+++  P+LG + +L S+ A  F +  RK      +++   T   +S+ + +GK  Y
Sbjct: 788 LLVWILV--PILGALVIL-SICAGAFTYYIRKRKPHNGRNTDSETGENMSIFSVDGKFKY 844

Query: 847 EEIIR 851
           ++II 
Sbjct: 845 QDIIE 849

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219699|ref|NP_174809.1| putative leucine-rich repeat receptor-like protein [Arabidopsis thaliana] gi|75175345|sp|Q9LP24.1|Y1571_ARATH RecName: Full=Probable leucine-rich repeat receptor-like protein kinase At1g35710; Flags: Precursor gi|8778966|gb|AAF79881.1|AC021198_1 Contains similarity to receptor protein kinase-like protein from Arabidopsis thaliana gb|AL161513. It contains a eukaryotic protein kinase domain PF|00069. EST gb|AI997574 comes from this gene [Arabidopsis thaliana] gi|332193703|gb|AEE31824.1| putative leucine-rich repeat receptor-like protein [Arabidopsis thaliana]

 Score =  637 bits (1642), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 378/845 (44%), Positives = 524/845 (62%), Gaps = 61/845 (7%)

Query: 37  EVHALLKWKTSLQNHDKGSLLPSWT--LNNATKISPCAWFGIHCNHVGRVNSINLTNVGL 94
           E +ALLKWK++  N  K   L SW    N  T  S  +W+G+ CN  G +  +NLTN G+
Sbjct: 33  EANALLKWKSTFTNSSK---LSSWVHDANTNTSFSCTSWYGVSCNSRGSIEELNLTNTGI 89

Query: 95  KGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNL 154
           +GT  DF F S  +LAY+DL                        S N  SGTIPPQ GNL
Sbjct: 90  EGTFQDFPFISLSNLAYVDL------------------------SMNLLSGTIPPQFGNL 125

Query: 155 SMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNF 214
           S L +  LS N  +G I P +G+L  +  L+L +N L+  IP E+G + S+ +LAL+ N 
Sbjct: 126 SKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNK 185

Query: 215 LKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNL 274
           L GSIP SLGNL NL +LYL+ N L+G IP E+GN++S++ LAL  NKL GSIP  LGNL
Sbjct: 186 LTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNL 245

Query: 275 TNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNS 334
            NL  LYL  N  +  IP EIGN++S++ L L +N+L GSIP SLGNL NL  L L+ N 
Sbjct: 246 KNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNY 305

Query: 335 LSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNL 394
           L+G IP ++GN++S+  LEL++N+L+ SIP  LGNL NL   YLY+N L+G IP E+GN+
Sbjct: 306 LTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNM 365

Query: 395 KSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNK 454
           +S+ +L L+ NKL+GSIP S GNL NL  LYL+ N L G IP+E+GN++S+  L L  NK
Sbjct: 366 ESMIDLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNK 425

Query: 455 LSNSISHSLGNLT------------------------HMTLLALYDNALSGVIPEELGNL 490
           L+ S+  S GN T                        H+T L L  N  +G  PE +   
Sbjct: 426 LTGSVPDSFGNFTKLESLYLRVNHLSGAIPPGVANSSHLTTLILDTNNFTGFFPETVCKG 485

Query: 491 VKLTMLTLSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNN 549
            KL  ++L  N L+G IP +LR+  +LIR R   N  T +I E+FGI+P L FID SHN 
Sbjct: 486 RKLQNISLDYNHLEGPIPKSLRDCKSLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNK 545

Query: 550 FYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKL 609
           F+G+ISS+W K P LG   +S NNI G++P EI + +QL  +DLS N++ G++P  IG L
Sbjct: 546 FHGEISSNWEKSPKLGALIMSNNNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNL 605

Query: 610 SSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQ 669
           ++L +L L  NQL G++P+ L  L  LE LDLSSN  S+ IP++  + +KLH +NLS N+
Sbjct: 606 TNLSRLRLNGNQLSGRVPAGLSFLTNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNK 665

Query: 670 FIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEM 729
           F   IP +L KL  L++LDLSHN L  EIPSQ+ +++SL+ L+LSHNNLS  IP  FE M
Sbjct: 666 FDGSIP-RLSKLTQLTQLDLSHNQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGM 724

Query: 730 NGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDI--KGFQSCKA-SKSHKPAS 786
             L  +DIS N+L GP+P++  F  A  +AL+ N GLC +I  +  + C+   K  K  +
Sbjct: 725 IALTNVDISNNKLEGPLPDTPTFRKATADALEENIGLCSNIPKQRLKPCRELKKPKKNGN 784

Query: 787 RKIWVVIVFPLLGTVALLISLIALFFIFRRRKNALQTLQSSPRGTRGFLSVLTFEGKIVY 846
             +W+++  P+LG V +++S+ A  F +  RK  LQ  +++   T   +S+ + +GK  Y
Sbjct: 785 LVVWILV--PILG-VLVILSICANTFTYCIRKRKLQNGRNTDPETGENMSIFSVDGKFKY 841

Query: 847 EEIIR 851
           ++II 
Sbjct: 842 QDIIE 846

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357439013|ref|XP_003589783.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355478831|gb|AES60034.1| Receptor protein kinase-like protein [Medicago truncatula]

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 367/865 (42%), Positives = 526/865 (60%), Gaps = 61/865 (7%)

Query: 16  FFLILFPVLDFPLIVYSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCA-WF 74
           FF +   V+  P    +D   E  ALLKWK SL NH   +LL SW  NN     PC+ W 
Sbjct: 17  FFFVF--VMATPYAATNDQGSEADALLKWKASLDNHSN-ALLSSWIGNN-----PCSSWE 68

Query: 75  GIHCNHVGR-VNSINLTNVGLKGTLHDFSFSSF-----------------PH-------L 109
           GI C++  + +N +NLT++GLKGTL   +FSS                  PH       L
Sbjct: 69  GITCDYKSKSINKVNLTDIGLKGTLQSLNFSSLTKIHTLVLTNNFLYGVVPHHIGEMSSL 128

Query: 110 AYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSG 169
             LDL VN + G IP  IGN+SK+ YLDLS N  +G IP +I  L  L FL ++ NQ  G
Sbjct: 129 KTLDLSVNNLSGTIPNSIGNLSKISYLDLSFNYLTGIIPFEITQLVSLYFLSMATNQLIG 188

Query: 170 RIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNL 229
            IP +IG+L  +E L +  N L+G +P E+G L+ L EL L++N+L G+IP ++GNL+NL
Sbjct: 189 HIPREIGNLVNLERLDIQLNNLTGSVPQEIGFLTKLAELDLSANYLSGTIPSTIGNLSNL 248

Query: 230 AILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSS 289
             LYL+ N L GSIPSE+GNL SL ++ L  N L G IP  +GNL NL+++ L +N  S 
Sbjct: 249 HWLYLYQNHLMGSIPSEVGNLYSLFTIQLLGNHLSGPIPSSIGNLVNLNSIRLDHNDLSG 308

Query: 290 SIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSL 349
            IP  IG L +L  ++L +N+++G +P ++GNLT L  LYL +N+L+G IP  IGNL +L
Sbjct: 309 EIPISIGKLVNLDTIDLSDNKISGPLPSTIGNLTKLTVLYLSSNALTGQIPPSIGNLVNL 368

Query: 350 SGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSG 409
             ++L++N+LS  IP  +GNLT ++   L+ N+L+G +P  IGN+ +L  + LSENKLSG
Sbjct: 369 DTIDLSENKLSRPIPSTVGNLTKVSILSLHSNALTGQLPPSIGNMVNLDTIYLSENKLSG 428

Query: 410 SIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHM 469
            IP ++GNLT L  L L SN+L G+IP+ + N+ +L  LQL  N                
Sbjct: 429 PIPSTIGNLTKLNSLSLFSNSLTGNIPKVMNNIANLESLQLASNN--------------- 473

Query: 470 TLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTC 528
                     +G +P  +    KLT  + S+NQ  G IP +L+  ++LIR+RL +N +T 
Sbjct: 474 ---------FTGHLPLNICAGRKLTKFSASNNQFTGPIPKSLKKCSSLIRVRLQQNQITD 524

Query: 529 NISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQL 588
           NI+++FG++P L +++LS NNFYG IS +WGKC NL +  +S NN+ GS+P E+G ++QL
Sbjct: 525 NITDAFGVYPNLDYMELSDNNFYGHISPNWGKCKNLTSLQISNNNLTGSIPQELGGATQL 584

Query: 589 HVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSN 648
             ++LS+NH+ GKIP E+G LS LIKL +  N L G++P ++ SL  L  L+L  N LS 
Sbjct: 585 QELNLSSNHLTGKIPEELGNLSLLIKLSISNNNLLGEVPVQIASLQALTALELEKNNLSG 644

Query: 649 SIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSL 708
            IPR LG L +L +LNLS N+F   IP++ ++L  + +LDLS N +   IPS +  +  L
Sbjct: 645 FIPRRLGRLSELIHLNLSQNKFEGNIPVEFDQLKVIEDLDLSENVMSGTIPSMLGQLNHL 704

Query: 709 EMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCG 768
           + LNLSHNNLS  IP  + EM  L  +DISYN+L GPIP+ TAF  A +EAL+ N+GLCG
Sbjct: 705 QTLNLSHNNLSGTIPLSYGEMLSLTIVDISYNQLEGPIPSITAFQKAPIEALRNNKGLCG 764

Query: 769 DIKGFQSCKASKS--HKPASRKIWVVIVFPLLGTVALLISLIALFFIFRRRKNALQTLQS 826
           ++ G   C  S    H   +  I V+++   LGT+ L      + ++F +  +  +   +
Sbjct: 765 NVSGLVCCSTSGGNFHSHKTSNILVLVLPLTLGTLLLAFFAYGISYLFCQTSSTKEDNHA 824

Query: 827 SPRGTRGFLSVLTFEGKIVYEEIIR 851
               T    ++ +F+GK+VYE II 
Sbjct: 825 EEFQTENLFAIWSFDGKMVYETIIE 849

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577797|ref|XP_003557009.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Glycine max]

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 383/895 (42%), Positives = 532/895 (59%), Gaps = 84/895 (9%)

Query: 32  SDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTN 91
           S+   E +ALLKWK+SL N  + SL  SW+ NN     PC W GI C+    V++INLTN
Sbjct: 31  SEIASEANALLKWKSSLDNQSRASL-SSWSGNN-----PCIWLGIACDEFNSVSNINLTN 84

Query: 92  VGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI 151
           VGL+GTL + +FS  P++  L++  N + G IPPQIG++SKL  LDLS N  SG IP  I
Sbjct: 85  VGLRGTLQNLNFSLLPNILTLNMSHNSLNGTIPPQIGSLSKLARLDLSDNFLSGEIPSTI 144

Query: 152 GNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALT 211
           GNLS L +L    N  SG IP  IG+L  ++++ L KN+LSG IP  +G LS L+ L++ 
Sbjct: 145 GNLSNLYYLSFYDNSLSGAIPSSIGNLVNLDSMILHKNKLSGSIPFIIGNLSKLSVLSIY 204

Query: 212 SNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFL 271
           SN L G IP S+GNL N+  L L+ N LSGSIP  IGNL  LS L +  N+L G IP  +
Sbjct: 205 SNELTGPIPTSIGNLVNMDSLLLYENKLSGSIPFTIGNLSKLSGLYISLNELTGPIPASI 264

Query: 272 GNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLY 331
           GNL NL+ + L  N  S SIP  IGNL  LS L +  N L G IP S+GNL NLD++ L+
Sbjct: 265 GNLVNLEAMRLFKNKLSGSIPFNIGNLSKLSKLSIHSNELTGPIPASIGNLVNLDSMILH 324

Query: 332 TNSLSGSIP------------------------SEIGNLKSLSGLELADNELSSSIPHYL 367
            N LSGSIP                        + IGNL  L  L L +N+LS SIP  +
Sbjct: 325 KNKLSGSIPFIIGNLSKFSVLSISFNELTGPIPASIGNLVHLDSLLLEENKLSGSIPFTI 384

Query: 368 GNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLH 427
           GNL+ L+  Y+  N L+G IP+ IGNL +L  + L +NKLSGSIP ++GNL+ L+ L +H
Sbjct: 385 GNLSKLSGLYISLNELTGPIPASIGNLVNLEAMRLFKNKLSGSIPFTIGNLSKLSKLSIH 444

Query: 428 SNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEEL 487
           SN L G IP  IGNL  L  L L +NKLS SI  ++GNL+ +++L++  N L+G IP  +
Sbjct: 445 SNELTGPIPASIGNLVHLDSLLLEENKLSGSIPFTIGNLSKLSVLSISLNELTGSIPSTI 504

Query: 488 GNL------------------VKLTMLT------LSDNQLQGSIP--------------- 508
           GNL                  ++++MLT      L+DN   G +P               
Sbjct: 505 GNLSNVRELFFIGNELGGKIPIEMSMLTALESLQLADNNFIGHLPQNICIGGTLKNFTAG 564

Query: 509 ----------NLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDW 558
                     +L+N ++LIR+RL RN LT +I+++FG+ P L +I+LS NNFYGQ+S +W
Sbjct: 565 DNNFIGPIPVSLKNCSSLIRVRLQRNQLTGDITDAFGVLPNLDYIELSDNNFYGQLSPNW 624

Query: 559 GKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILR 618
           GK  +L +  +S NN+ G +PPE+  +++L  + LS+NH+ G IP ++  L  L  L L 
Sbjct: 625 GKFRSLTSLRISNNNLSGVIPPELAGATKLQRLQLSSNHLTGNIPHDLCNLP-LFDLSLD 683

Query: 619 RNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL 678
            N L G +P E+ S+ +L+ L L SN+LS  IP+ LGNL+ L  ++LS N F   IP +L
Sbjct: 684 NNNLTGNVPKEIASMQKLQILKLGSNKLSGLIPKQLGNLLNLWNMSLSQNNFQGNIPSEL 743

Query: 679 EKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDIS 738
            KL  L+ LDL  N L   IPS    ++SLE LNLSHNNLS  +   F++M  L  IDIS
Sbjct: 744 GKLKSLTSLDLGGNSLRGTIPSMFGELKSLETLNLSHNNLSGNL-SSFDDMTSLTSIDIS 802

Query: 739 YNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSCKAS--KSHKPASRKIWVVIVFP 796
           YN+  GP+PN  AF +A +EAL+ N+GLCG++ G + C  S  KSH    +K+ +VI+  
Sbjct: 803 YNQFEGPLPNILAFHNAKIEALRNNKGLCGNVTGLEPCSTSSGKSHNHMRKKVMIVILPL 862

Query: 797 LLGTVALLISLIALFFIFRRRKNALQTLQSSPRGTRGFLSVLTFEGKIVYEEIIR 851
            LG + L +    +++   +     +  Q++   T    ++ +F+GK+V+E II 
Sbjct: 863 TLGILILALFAFGVWYHLCQTSTNKED-QATSIQTPNIFAIWSFDGKMVFENIIE 916

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224589418|gb|ACN59243.1| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana]

 Score =  620 bits (1598), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 370/816 (45%), Positives = 508/816 (62%), Gaps = 61/816 (7%)

Query: 37  EVHALLKWKTSLQNHDKGSLLPSWT--LNNATKISPCAWFGIHCNHVGRVNSINLTNVGL 94
           E +ALLKWK++  N  K   L SW    N  T  S  +W+G+ CN  G +  +NLTN G+
Sbjct: 33  EANALLKWKSTFTNSSK---LSSWVHDANTNTSFSCTSWYGVSCNSRGSIEELNLTNTGI 89

Query: 95  KGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNL 154
           +GT  DF F S  +LAY+DL                        S N  SGTIPPQ GNL
Sbjct: 90  EGTFQDFPFISLSNLAYVDL------------------------SMNLLSGTIPPQFGNL 125

Query: 155 SMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNF 214
           S L +  LS N  +G I P +G+L  +  L+L +N L+  IP E+G + S+ +LAL+ N 
Sbjct: 126 SKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNK 185

Query: 215 LKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNL 274
           L GSIP SLGNL NL +LYL+ N L+G IP E+GN++S++ LAL  NKL GSIP  LGNL
Sbjct: 186 LTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNL 245

Query: 275 TNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNS 334
            NL  LYL  N  +  IP EIGN++S++ L L +N+L GSIP SLGNL NL  L L+ N 
Sbjct: 246 KNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNY 305

Query: 335 LSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNL 394
           L+G IP ++GN++S+  LEL++N+L+ SIP  LGNL NL   YLY+N L+G IP E+GN+
Sbjct: 306 LTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNM 365

Query: 395 KSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNK 454
           +S+ +L L+ NKL+GSIP S GNL NL  LYL+ N L G IP+E+GN++S+  L L  NK
Sbjct: 366 ESMIDLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNK 425

Query: 455 LSNSISHSLGNLT------------------------HMTLLALYDNALSGVIPEELGNL 490
           L+ S+  S GN T                        H+T L L  N  +G  PE +   
Sbjct: 426 LTGSVPDSFGNFTKLESLYLRVNHLSGAIPPGVANSSHLTTLILDTNNFTGFFPETVCKG 485

Query: 491 VKLTMLTLSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNN 549
            KL  ++L  N L+G IP +LR+  +LIR R   N  T +I E+FGI+P L FID SHN 
Sbjct: 486 RKLQNISLDYNHLEGPIPKSLRDCKSLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNK 545

Query: 550 FYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKL 609
           F+G+ISS+W K P LG   +S NNI G++P EI + +QL  +DLS N++ G++P  IG L
Sbjct: 546 FHGEISSNWEKSPKLGALIMSNNNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNL 605

Query: 610 SSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQ 669
           ++L +L L  NQL G++P+ L  L  LE LDLSSN  S+ IP++  + +KLH +NLS N+
Sbjct: 606 TNLSRLRLNGNQLSGRVPAGLSFLTNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNK 665

Query: 670 FIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEM 729
           F   IP +L KL  L++LDLSHN L  EIPSQ+ +++SL+ L+LS+NNLS  IP  FE M
Sbjct: 666 FDGSIP-RLSKLTQLTQLDLSHNQLDGEIPSQLSSLQSLDKLDLSYNNLSGLIPTTFEGM 724

Query: 730 NGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDI--KGFQSCKA-SKSHKPAS 786
             L  +DIS N+L GP+P++  F  A  +AL+ N GLC +I  +  + C+   K  K  +
Sbjct: 725 IALTNVDISNNKLEGPLPDTPTFRKATADALEENIGLCSNIPKQRLKPCRELKKPKKNGN 784

Query: 787 RKIWVVIVFPLLGTVALLISLIALFFIFRRRKNALQ 822
             +W+++  P+LG V +++S+ A  F +  RK  LQ
Sbjct: 785 LVVWILV--PILG-VLVILSICANTFTYCIRKRKLQ 817

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145445|ref|XP_002325645.1| predicted protein [Populus trichocarpa] gi|222862520|gb|EEF00027.1| predicted protein [Populus trichocarpa]

 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 386/829 (46%), Positives = 515/829 (62%), Gaps = 38/829 (4%)

Query: 30  VYSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCA-WFGIHCNHVGRVNSIN 88
           V   +  E  ALLKWK SL N  + SLL SW       ISPC  W GI C+  G V +++
Sbjct: 54  VAGGNNTEAEALLKWKASLDNQSQ-SLLSSWF-----GISPCINWTGITCDSSGSVTNLS 107

Query: 89  LTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIP 148
           L + GL+GTL+D +FSSFP+L  L+LQ                         NS  GT+P
Sbjct: 108 LPHFGLRGTLYDLNFSSFPNLFSLNLQ------------------------RNSIHGTVP 143

Query: 149 PQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNEL 208
             I NL  +  L L  N  +G IP +IG +  +  L+L  N LSG IP E+G L+SL+ L
Sbjct: 144 SGIDNLPKITELNLCDNNLTGSIPSKIGLMKSLNILYLCGNILSGSIPCEIGKLTSLSLL 203

Query: 209 ALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIP 268
           +L++N L G IP S+GNLTNL++L+L  N LSG IPS IGN+  L  L L  N L G IP
Sbjct: 204 SLSANNLTGVIPFSIGNLTNLSLLHLFQNQLSGPIPSSIGNMSFLIDLQLQQNNLTGFIP 263

Query: 269 LFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTL 328
             +GNL +L  LYL  N  S SIP EIG L+SL+ L+   N L G+IP S+GNLTNL   
Sbjct: 264 SSVGNLRSLSILYLWGNKLSGSIPGEIGLLESLNDLDFSSNNLTGAIPNSIGNLTNLSFF 323

Query: 329 YLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIP 388
           +L+ N LSG IP+ IGN+  L  +EL  N L  SIP  +GNL  L+ FYL++N LSG IP
Sbjct: 324 HLFQNQLSGPIPTSIGNMIMLIDVELGQNNLIGSIPTSVGNLRKLSIFYLWRNKLSGFIP 383

Query: 389 SEIGNLKSLSNLDLS---ENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSL 445
            EIG L+SL++LD S   EN L+G IP S+GNL NL+ LYL  N L G +P EIG LKSL
Sbjct: 384 QEIGLLESLNDLDFSKLDENNLNGLIPSSIGNLKNLSFLYLGENNLYGYVPSEIGKLKSL 443

Query: 446 FELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQG 505
            +L  G+NKL  S+   + NLTH+  L L  N  +G +P+EL +   L      +N   G
Sbjct: 444 EKLTFGENKLRGSLPLKMNNLTHLKFLDLSYNEFTGHLPQELCHGEVLERFIACNNYFSG 503

Query: 506 SIP-NLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNL 564
           SIP +L+N T L RLRL+RN LT NISE FGI+P L ++DLS+NNFYG++S  WG   N+
Sbjct: 504 SIPKSLKNCTGLHRLRLDRNQLTGNISEDFGIYPHLNYVDLSYNNFYGELSLKWGDYRNI 563

Query: 565 GTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFG 624
            +  +S NN+ G +P E+G ++QL +IDLS+NH+ G IP E+G L  L  L L  N L G
Sbjct: 564 TSLKISNNNVSGEIPAELGKATQLQLIDLSSNHLEGTIPKELGGLKLLYNLTLSNNHLSG 623

Query: 625 QLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHL 684
            +PS++  L  L+ LDL+SN LS SIP+ LG    L  LNLS N+F   IP ++  L  L
Sbjct: 624 AIPSDIKMLSSLKILDLASNNLSGSIPKQLGECSNLLLLNLSNNKFTNSIPQEMGFLRSL 683

Query: 685 SELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHG 744
            +LDLS NFL +EIP Q+  ++ LE LN+SHN LS  IPR F+++  L  +DISYNELHG
Sbjct: 684 QDLDLSCNFLAQEIPWQLGQLQMLETLNVSHNMLSGLIPRTFKDLLSLTVVDISYNELHG 743

Query: 745 PIPNSTAFSDALMEALQGNEGLCGDIKGFQSC---KASKSHKPASRKIWVVIVFPLLGTV 801
           PIP++ AF +A  EAL+ N G+CG+  G + C   K+S++ K  S K+ ++IV PLLG++
Sbjct: 744 PIPDTKAFHNASFEALRDNMGICGNASGLKPCNLPKSSRTVKRKSNKLVILIVLPLLGSL 803

Query: 802 ALLISLIALFFIFRRRKNALQTLQSSPRGTRGFLSVLTFEGKIVYEEII 850
            L++ +I   FI R+R    +    +    R   ++L  +GK++YE II
Sbjct: 804 LLVLVVIGALFILRQRARKRKAEPGNIEQDRNLFTILGHDGKLLYENII 852

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357439001|ref|XP_003589777.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355478825|gb|AES60028.1| Receptor protein kinase-like protein [Medicago truncatula]

 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 370/868 (42%), Positives = 503/868 (57%), Gaps = 37/868 (4%)

Query: 15  LFFLILFPVLDFPLIVYSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWF 74
           L+F  +F +   P       + E +ALLKWK S  N  K SLL SW  N      PC W 
Sbjct: 14  LWFFCMFVMATSPHASSKTQSSEANALLKWKASFDNQSK-SLLSSWIGN-----KPCNWV 67

Query: 75  GIHCNHVGR-VNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKL 133
           GI C+   + +  I+L ++GLKGTL + + SS P +  L L+ N  FG++P  IG +S L
Sbjct: 68  GITCDGKSKSIYKIHLASIGLKGTLQNLNISSLPKIHSLVLRNNSFFGVVPHHIGVMSNL 127

Query: 134 KYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSG 193
           + LDLS N  SG++P  IGN S L +L LS N  SG I   +G L+ I  L L  NQL G
Sbjct: 128 ETLDLSLNELSGSVPNTIGNFSKLSYLDLSFNYLSGSISISLGKLAKITNLKLHSNQLFG 187

Query: 194 PIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPS-------- 245
            IP E+G L +L  L L +N L G IP  +G L  L  L L  N LSG+IPS        
Sbjct: 188 HIPREIGNLVNLQRLYLGNNSLSGFIPREIGFLKQLGELDLSMNHLSGAIPSTIGNLSNL 247

Query: 246 ----------------EIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSS 289
                           E+G L SLS++ L +N L GSIP  + NL NLD++ L  N  S 
Sbjct: 248 YYLYLYSNHLIGSIPNEVGKLYSLSTIQLLDNNLSGSIPPSMSNLVNLDSILLHRNKLSG 307

Query: 290 SIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSL 349
            IP+ IGNL  L++L L  N L G IP S+ NL NLDT+ L+TN+LSG IP  IGNL  L
Sbjct: 308 PIPTTIGNLTKLTMLSLFSNALTGQIPPSIYNLVNLDTIVLHTNTLSGPIPFTIGNLTKL 367

Query: 350 SGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSG 409
           + L L  N L+  IPH +GNL NL +  L+ N LSG IP  I NL  L+ L L  N L+G
Sbjct: 368 TELTLFSNALTGQIPHSIGNLVNLDSIILHINKLSGPIPCTIKNLTKLTVLSLFSNALTG 427

Query: 410 SIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHM 469
            IP S+GNL NL  + + +N   G IP  IGNL  L  L    N LS +I   +  +T++
Sbjct: 428 QIPPSIGNLVNLDSITISTNKPSGPIPPTIGNLTKLSSLPPFSNALSGNIPTRMNRVTNL 487

Query: 470 TLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTC 528
            +L L DN  +G +P  +    KL   T S+N   G +P +L+N ++LIR+RL +N LT 
Sbjct: 488 EVLLLGDNNFTGQLPHNICVSGKLYWFTASNNHFTGLVPMSLKNCSSLIRVRLQKNQLTG 547

Query: 529 NISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQL 588
           NI++ FG++P L +++LS NNFYG IS +WGKC  L +  +S NN+ GS+P E+G ++QL
Sbjct: 548 NITDGFGVYPHLVYMELSDNNFYGHISPNWGKCKKLTSLQISNNNLTGSIPQELGGATQL 607

Query: 589 HVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSN 648
             ++LS+NH+ GKIP E+G LS LIKL +  N L G++P ++ SL  L  L+L  N LS 
Sbjct: 608 QELNLSSNHLTGKIPKELGNLSLLIKLSINNNNLLGEVPVQIASLQALTALELEKNNLSG 667

Query: 649 SIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSL 708
            IPR LG L +L +LNLS N+F   IPI+  +L  + +LDLS NFL   IPS +  +  +
Sbjct: 668 FIPRRLGRLSELIHLNLSQNRFEGNIPIEFGQLEVIEDLDLSGNFLNGTIPSMLGQLNHI 727

Query: 709 EMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCG 768
           + LNLSHNNLS  IP  + +M  L  +DISYN+L GPIPN  AF  A +EAL+ N+GLCG
Sbjct: 728 QTLNLSHNNLSGTIPLSYGKMLSLTIVDISYNQLEGPIPNIPAFLKAPIEALRNNKGLCG 787

Query: 769 DIKGFQSCKASKS-----HKPASRKIWVVIVFPLLGTVALLISLIALFFIFRRRKNALQT 823
           ++ G + C  S       H   + KI  +++   LGT+ L + +    ++F       + 
Sbjct: 788 NVSGLEPCSTSGGNFHNFHSHKTNKILDLVLPLTLGTLLLALFVYGFSYLFYHTSRKKEY 847

Query: 824 LQSSPRGTRGFLSVLTFEGKIVYEEIIR 851
             +    T    +  +F+GK+VYE II 
Sbjct: 848 KPTEEFQTENLFATWSFDGKMVYENIIE 875

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357439011|ref|XP_003589782.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355478830|gb|AES60033.1| Receptor protein kinase-like protein [Medicago truncatula]

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 370/868 (42%), Positives = 503/868 (57%), Gaps = 37/868 (4%)

Query: 15  LFFLILFPVLDFPLIVYSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWF 74
           L+F  +F +   P       + E +ALLKWK S  N  K SLL SW  N      PC W 
Sbjct: 14  LWFFCMFVMATSPHASSKTQSSEANALLKWKASFDNQSK-SLLSSWIGN-----KPCNWV 67

Query: 75  GIHCNHVGR-VNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKL 133
           GI C+   + +  I+L ++GLKGTL + + SS P +  L L+ N  FG++P  IG +S L
Sbjct: 68  GITCDGKSKSIYKIHLASIGLKGTLQNLNISSLPKIHSLVLRNNSFFGVVPHHIGVMSNL 127

Query: 134 KYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSG 193
           + LDLS N  SG++P  IGN S L +L LS N  SG I   +G L+ I  L L  NQL G
Sbjct: 128 ETLDLSLNELSGSVPNTIGNFSKLSYLDLSFNYLSGSISISLGKLAKITNLKLHSNQLFG 187

Query: 194 PIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPS-------- 245
            IP E+G L +L  L L +N L G IP  +G L  L  L L  N LSG+IPS        
Sbjct: 188 HIPREIGNLVNLQRLYLGNNSLSGFIPREIGFLKQLGELDLSMNHLSGAIPSTIGNLSNL 247

Query: 246 ----------------EIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSS 289
                           E+G L SLS++ L +N L GSIP  + NL NLD++ L  N  S 
Sbjct: 248 YYLYLYSNHLIGSIPNEVGKLYSLSTIQLLDNNLSGSIPPSMSNLVNLDSILLHRNKLSG 307

Query: 290 SIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSL 349
            IP+ IGNL  L++L L  N L G IP S+ NL NLDT+ L+TN+LSG IP  IGNL  L
Sbjct: 308 PIPTTIGNLTKLTMLSLFSNALTGQIPPSIYNLVNLDTIVLHTNTLSGPIPFTIGNLTKL 367

Query: 350 SGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSG 409
           + L L  N L+  IPH +GNL NL +  L+ N LSG IP  I NL  L+ L L  N L+G
Sbjct: 368 TELTLFSNALTGQIPHSIGNLVNLDSIILHINKLSGPIPCTIKNLTKLTVLSLFSNALTG 427

Query: 410 SIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHM 469
            IP S+GNL NL  + + +N   G IP  IGNL  L  L    N LS +I   +  +T++
Sbjct: 428 QIPPSIGNLVNLDSITISTNKPSGPIPPTIGNLTKLSSLPPFSNALSGNIPTRMNRVTNL 487

Query: 470 TLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTC 528
            +L L DN  +G +P  +    KL   T S+N   G +P +L+N ++LIR+RL +N LT 
Sbjct: 488 EVLLLGDNNFTGQLPHNICVSGKLYWFTASNNHFTGLVPMSLKNCSSLIRVRLQKNQLTG 547

Query: 529 NISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQL 588
           NI++ FG++P L +++LS NNFYG IS +WGKC  L +  +S NN+ GS+P E+G ++QL
Sbjct: 548 NITDGFGVYPHLVYMELSDNNFYGHISPNWGKCKKLTSLQISNNNLTGSIPQELGGATQL 607

Query: 589 HVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSN 648
             ++LS+NH+ GKIP E+G LS LIKL +  N L G++P ++ SL  L  L+L  N LS 
Sbjct: 608 QELNLSSNHLTGKIPKELGNLSLLIKLSINNNNLLGEVPVQIASLQALTALELEKNNLSG 667

Query: 649 SIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSL 708
            IPR LG L +L +LNLS N+F   IPI+  +L  + +LDLS NFL   IPS +  +  +
Sbjct: 668 FIPRRLGRLSELIHLNLSQNRFEGNIPIEFGQLEVIEDLDLSGNFLNGTIPSMLGQLNHI 727

Query: 709 EMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCG 768
           + LNLSHNNLS  IP  + +M  L  +DISYN+L GPIPN  AF  A +EAL+ N+GLCG
Sbjct: 728 QTLNLSHNNLSGTIPLSYGKMLSLTIVDISYNQLEGPIPNIPAFLKAPIEALRNNKGLCG 787

Query: 769 DIKGFQSCKASKS-----HKPASRKIWVVIVFPLLGTVALLISLIALFFIFRRRKNALQT 823
           ++ G + C  S       H   + KI  +++   LGT+ L + +    ++F       + 
Sbjct: 788 NVSGLEPCSTSGGNFHNFHSHKTNKILDLVLPLTLGTLLLALFVYGFSYLFYHTSRKKEY 847

Query: 824 LQSSPRGTRGFLSVLTFEGKIVYEEIIR 851
             +    T    +  +F+GK+VYE II 
Sbjct: 848 KPTEEFQTENLFATWSFDGKMVYENIIE 875

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146638|ref|XP_002326079.1| predicted protein [Populus trichocarpa] gi|222862954|gb|EEF00461.1| predicted protein [Populus trichocarpa]

 Score =  590 bits (1520), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 395/915 (43%), Positives = 517/915 (56%), Gaps = 119/915 (13%)

Query: 13  FSLFFLILFPVLDF----PLIVYSDSTE-----------------------EVHALLKWK 45
           FS FFL LF +L      P   ++D T                        E  ALLKWK
Sbjct: 9   FSSFFLHLFVLLHMFYFSPFFAFADHTSSATPISGTTASAAKYKVAGGKITEAEALLKWK 68

Query: 46  TSLQNHDKGSLLPSWTLNNATKISPCA-WFGIHCNHVGRVNSINLTNVGLKGTLHDFSFS 104
            SL +  +  L  SW       I+PC  W GI C++ G V ++ L + GL+GTL+DF+FS
Sbjct: 69  ASLDSQSQSLLS-SWV-----GINPCINWIGIDCDNSGSVTNLTLQSFGLRGTLYDFNFS 122

Query: 105 SFPHLAYLDLQVNQIFGIIPPQIGNISK-------------------------------- 132
           SFP+L  LDL+ N + G IP QIGN+SK                                
Sbjct: 123 SFPNLLILDLRQNSLSGTIPSQIGNLSKIIELNLRDNELTGSIPSEIGFLKSLSLLSLRE 182

Query: 133 ----------------LKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIG 176
                           L  LDLS N  SG IP  IGNL  L  LYL  NQ SG IP  IG
Sbjct: 183 NKLSGFIPQEICLLETLNQLDLSINVLSGRIPNSIGNLRNLSLLYLFRNQLSGPIPSSIG 242

Query: 177 HLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHN 236
           +L  +  L L++N+LSG IP E+G L SLN+L L+SN L G IP ++GNL NL++L+L  
Sbjct: 243 NLRNLSKLFLWRNKLSGFIPQEIGLLESLNQLTLSSNILTGGIPSTIGNLRNLSLLFLWG 302

Query: 237 NSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIG 296
           N LSGSIP EI  L+SL+ L L  N L G IP F GNL +L  L+L  N  S SIP EIG
Sbjct: 303 NKLSGSIPQEIMFLESLNQLDLSYNILTGEIPKFTGNLKDLSVLFLGGNKLSGSIPQEIG 362

Query: 297 NLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELAD 356
            LKSL+ L+L  N L G IP S+GNLT+L  LYL+ N LS SIP EIG L+SL+ L L++
Sbjct: 363 LLKSLNKLDLSNNVLTGGIPYSIGNLTSLSLLYLHRNQLSSSIPQEIGLLQSLNELHLSE 422

Query: 357 NELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLG 416
            EL          L +L    L  N  +G IP+ IGNL++LS L L  NKLSG I  S+ 
Sbjct: 423 IEL----------LESLNELDLSSNIFTGEIPNSIGNLRNLSILYLESNKLSGPILLSIW 472

Query: 417 NLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYD 476
           N+T L  L L  N L G +P EIG LKSL +L    NKL   +   + NLTH+  L+L D
Sbjct: 473 NMTMLTTLALGQNNLSGYVPSEIGQLKSLEKLSFVKNKLHGPLPLEMNNLTHLKSLSLSD 532

Query: 477 NALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTCNISESFG 535
           N  +G +P+E+ +   L  LT ++N   GSIP +L+N T+L RLR +RN LT NISE FG
Sbjct: 533 NEFTGYLPQEVCHGGVLENLTAANNYFSGSIPKSLKNCTSLHRLRFDRNQLTGNISEDFG 592

Query: 536 IHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSA 595
           I+P L ++DLS+NNFYG++S  WG   N+ +  +S NN+ G +P E+G ++QL +IDL++
Sbjct: 593 IYPHLDYVDLSYNNFYGELSLKWGDYRNITSLKISNNNVSGEIPAELGKATQLQLIDLTS 652

Query: 596 NHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLG 655
           NH+ G IP E+G L  L  L L  N+L G +PS++  L  L+ LDL+SN LS SIP+ LG
Sbjct: 653 NHLEGTIPKELGGLKLLYSLTLSNNRLSGGIPSDIKMLSSLKILDLASNSLSGSIPKQLG 712

Query: 656 NLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSH 715
               L  LNLS N+F   IP ++  L  L +LDLS NFL +EIP Q+  ++ LE LN+SH
Sbjct: 713 ECSNLLLLNLSDNKFTNSIPQEIGFLRSLQDLDLSCNFLVQEIPWQLGQLQMLETLNVSH 772

Query: 716 NNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQS 775
           N LS  IPR F+ +  L  +DIS N+LHGPIP+  AF +A  EAL+ N G+CG+  G + 
Sbjct: 773 NMLSGLIPRSFKNLLSLTVVDISSNKLHGPIPDIKAFHNASFEALRDNMGICGNASGLKP 832

Query: 776 CKASKSHKPASRKIWVVIVFPLLGTVALLISLIALFFIFRRRKNALQTLQSSPRGTRGFL 835
           C   KS +   RK        LLG                 R+   Q ++      R   
Sbjct: 833 CNLPKSSRTVKRK-----SNKLLG-----------------REKLSQKIEQD----RNLF 866

Query: 836 SVLTFEGKIVYEEII 850
           ++L  +GK++YE II
Sbjct: 867 TILGHDGKLLYENII 881

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357439017|ref|XP_003589785.1| Receptor-like protein kinase [Medicago truncatula] gi|355478833|gb|AES60036.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  583 bits (1503), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 364/878 (41%), Positives = 511/878 (58%), Gaps = 60/878 (6%)

Query: 27  PLIVYSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGR-VN 85
           PL   +  + E +ALLKWK S  N  K +LL SW  N      PC W GI C+   + + 
Sbjct: 5   PLASANMQSSEANALLKWKASFDNQSK-ALLSSWIGN-----KPCNWVGITCDGKSKSIY 58

Query: 86  SINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSG 145
            I+L ++GLKGTL   +FSS P +  L L+ N  +G++P  IG +  L  LDLS N  SG
Sbjct: 59  KIHLASIGLKGTLQSLNFSSLPKIHSLVLRNNSFYGVVPHHIGLMCNLDTLDLSLNKLSG 118

Query: 146 TIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHL-FKNQLSGPIPHEVGGLSS 204
           +I   IGNLS L +L LS N  +G IP Q+  L  +   ++   N LSG +P E+G + +
Sbjct: 119 SIHNSIGNLSKLSYLDLSFNYLTGIIPAQVTQLVGLYEFYMGSNNDLSGSLPREIGRMRN 178

Query: 205 LNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLC 264
           L  L ++S  L G+IP S+G +TNL+ L +  N LSG+IP  I  +  L+ L+L NN   
Sbjct: 179 LTILDISSCNLIGAIPISIGKITNLSHLDVSQNHLSGNIPHGIWQMD-LTHLSLANNNFN 237

Query: 265 GSIPLFLGNLTNLDTLYLRNNSFSSSIPSE------------------------IGNLKS 300
           GSIP  +    NL  L+L+ +  S S+P E                        IG L +
Sbjct: 238 GSIPQSVFKSRNLQFLHLKESGLSGSMPKEFGMLGNLIDMDISSCNLTGSISTSIGKLTN 297

Query: 301 LSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELS 360
           +S L+L  N+L G IP  +GNL NL  L L  N+LSGS+P EIG LK L  L+L+ N L 
Sbjct: 298 ISYLQLYHNQLFGHIPREIGNLVNLKKLNLGYNNLSGSVPQEIGFLKQLFELDLSQNYLF 357

Query: 361 SSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTN 420
            +IP  +GNL+NL   YLY N+ SG +P+EIG L SL    LS N L G IP S+G + N
Sbjct: 358 GTIPSAIGNLSNLQLLYLYSNNFSGRLPNEIGELHSLQIFQLSYNNLYGPIPASIGEMVN 417

Query: 421 LAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALS 480
           L  ++L +N   G IP  IGNL +L  +    NKLS  +  ++GNLT ++ L+   NALS
Sbjct: 418 LNSIFLDANKFSGLIPPSIGNLVNLDTIDFSQNKLSGPLPSTIGNLTKVSELSFLSNALS 477

Query: 481 GVIPEELGNLV------------------------KLTMLTLSDNQLQGSIP-NLRNLTN 515
           G IP E+  L                         KLT     +N+  G IP +L+N ++
Sbjct: 478 GNIPTEVSLLTNLKSLQLAYNSFVGHLPHNICSSGKLTRFAAHNNKFTGPIPESLKNCSS 537

Query: 516 LIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNII 575
           LIRLRLN+N +T NI++SFG++P L +I+LS NNFYG +S +WGKC NL +  +S NN+I
Sbjct: 538 LIRLRLNQNKMTGNITDSFGVYPNLDYIELSDNNFYGYLSPNWGKCKNLTSLKISNNNLI 597

Query: 576 GSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQ 635
           GS+PPE+ +++ LH++DLS+N +IGKIP ++G LS+LI+L +  N L G++P ++ SL +
Sbjct: 598 GSIPPELAEATNLHILDLSSNQLIGKIPKDLGNLSALIQLSISNNHLSGEVPMQIASLHE 657

Query: 636 LEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLG 695
           L  LDL++N LS  IP  LG L +L  LNLS N+F   IP++L +L  + +LDLS NFL 
Sbjct: 658 LTTLDLATNNLSGFIPEKLGRLSRLLQLNLSQNKFEGNIPVELGQLNVIEDLDLSGNFLN 717

Query: 696 KEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDA 755
             IP+ +  +  LE LNLSHNNL   IP  F +M  L  +DISYN L GPIPN TAF  A
Sbjct: 718 GTIPTMLGQLNRLETLNLSHNNLYGNIPLSFFDMLSLTTVDISYNRLEGPIPNITAFQRA 777

Query: 756 LMEALQGNEGLCGDIKGFQSCKASKS--HKPASRKIWVVIVFPLLGTVALLISLIALFFI 813
            +EA + N+GLCG++ G + C  S    H   + KI V+++   LG + L + +  + + 
Sbjct: 778 PVEAFRNNKGLCGNVSGLEPCSTSGGNFHSHKTNKILVLVLSLTLGPLLLALFVYGISYQ 837

Query: 814 FRRRKNALQTLQSSPRGTRGFLSVLTFEGKIVYEEIIR 851
           F    +  +        T    ++ +F+GK+VYE II 
Sbjct: 838 FCCTSSTKEDKHVEEFQTENLFTIWSFDGKMVYENIIE 875

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	893
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.909	0.725	0.414	7.7e-158
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.751	0.642	0.381	5.2e-113
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.705	0.571	0.401	8.6e-104
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.778	0.556	0.362	3.6e-103
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.760	0.542	0.370	4.9e-101
TAIR|locus:2182870	1192	EMS1 "EXCESS MICROSPOROCYTES1"	0.784	0.588	0.36	6.2e-101
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.724	0.575	0.370	1.7e-98
TAIR|locus:2131518	1091	AT4G26540 [Arabidopsis thalian	0.706	0.578	0.373	1.1e-96
UNIPROTKB|P93194	1109	INRPK1 "Receptor-like protein	0.732	0.589	0.356	4.7e-96
TAIR|locus:2032697	1123	PEPR1 "PEP1 receptor 1" [Arabi	0.771	0.613	0.341	4.7e-96

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 1538 (546.5 bits), Expect = 7.7e-158, P = 7.7e-158
 Identities = 342/825 (41%), Positives = 476/825 (57%)

Query:    32 SDSTEEVHALLKWKTSLQNHDKGSLLPSWT--LNNATKISPCAWFGIHCNHVGRVNSINL 89
             S +  E +ALLKWK++  N  K   L SW    N  T  S  +W+G+ CN  G +  +NL
Sbjct:    28 SATIAEANALLKWKSTFTNSSK---LSSWVHDANTNTSFSCTSWYGVSCNSRGSIEELNL 84

Query:    90 TNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPP 149
             TN G++GT  DF F S  +LAY+DL +N + G IPPQ GN+SKL Y DLS+N  +G I P
Sbjct:    85 TNTGIEGTFQDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISP 144

Query:   150 QIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELA 209
              +GNL  L  LYL  N  +  IP ++G++  +  L L +N+L+G IP  +G L +L  L 
Sbjct:   145 SLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLY 204

Query:   210 LTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPL 269
             L  N+L G IPP LGN+ ++  L L  N L+GSIPS +GNLK+L  L L  N L G IP 
Sbjct:   205 LYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPP 264

Query:   270 FLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXX 329
              +GN+ ++  L L  N  + SIPS +GNLK+L++L L +N L G IP             
Sbjct:   265 EIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLE 324

Query:   330 XXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPS 389
                    GSIPS +GNLK+L+ L L +N L+  IP  LGN+ ++    L  N L+GSIPS
Sbjct:   325 LSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPS 384

Query:   390 EIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQ 449
               GNLK+L+ L L  N L+G IP  LGN+ ++  L L  N L GS+P   GN   L  L 
Sbjct:   385 SFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLY 444

Query:   450 LGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPX 509
             L  N LS +I   + N +H+T L L  N  +G  PE +    KL  ++L  N L+G IP 
Sbjct:   445 LRVNHLSGAIPPGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPK 504

Query:   510 XXXXXXXXXXXXXXXH-LTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFD 568
                            +  T +I E+FGI+P L FID SHN F+G+ISS+W K P LG   
Sbjct:   505 SLRDCKSLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPKLGALI 564

Query:   569 VSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPS 628
             +S NNI G++P EI + +QL  +DLS N++ G++P  IG            NQL G++P+
Sbjct:   565 MSNNNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPA 624

Query:   629 ELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELD 688
              L  L  LE LDLSSN  S+ IP++  + +KLH +NLS N+F   IP +L KL  L++LD
Sbjct:   625 GLSFLTNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIP-RLSKLTQLTQLD 683

Query:   689 LSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPN 748
             LSHN L  EIPSQ+ +++SL+ L+LSHNNLS  IP  FE M  L  +DIS N+L GP+P+
Sbjct:   684 LSHNQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGPLPD 743

Query:   749 STAFSDALMEALQGNEGLCGDI--KGFQSCKA-SKSHKPASRKIWVVIVFPLLGTVXXXX 805
             +  F  A  +AL+ N GLC +I  +  + C+   K  K  +  +W+++  P+LG V    
Sbjct:   744 TPTFRKATADALEENIGLCSNIPKQRLKPCRELKKPKKNGNLVVWILV--PILG-VLVIL 800

Query:   806 XXXXXXXXXXXXKNALQTLQSSPRGTRGFLSVLTFEGKIVYEEII 850
                         K  LQ  +++   T   +S+ + +GK  Y++II
Sbjct:   801 SICANTFTYCIRKRKLQNGRNTDPETGENMSIFSVDGKFKYQDII 845

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 1115 (397.6 bits), Expect = 5.2e-113, P = 5.2e-113
 Identities = 260/682 (38%), Positives = 377/682 (55%)

Query:   178 LSYIEALHLFKNQLSGPIPH-EVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHN 236
             L  I  L+L    + G         L +L  + L+ N   G+I P  G  + L    L  
Sbjct:    92 LGSIIRLNLTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSI 151

Query:   237 NSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIG 296
             N L G IP E+G+L +L +L L  NKL GSIP  +G LT +  + + +N  +  IPS  G
Sbjct:   152 NQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSFG 211

Query:   297 NLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIPSEIGNLKSLSGLELAD 356
             NL  L  L L  N L+GSIP                    G IPS  GNLK+++ L + +
Sbjct:   212 NLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFE 271

Query:   357 NELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLG 416
             N+LS  IP  +GN+T L    L+ N L+G IPS +GN+K+L+ L L  N+L+GSIP  LG
Sbjct:   272 NQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELG 331

Query:   417 NLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYD 476
              + ++  L +  N L G +P   G L +L  L L DN+LS  I   + N T +T+L L  
Sbjct:   332 EMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANSTELTVLQLDT 391

Query:   477 NALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXH-LTCNISESFG 535
             N  +G +P+ +    KL  LTL DN  +G +P                +  + +ISE+FG
Sbjct:   392 NNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISEAFG 451

Query:   536 IHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSA 595
             ++P L FIDLS+NNF+GQ+S++W +   L  F +S N+I G++PPEI + +QL  +DLS+
Sbjct:   452 VYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSS 511

Query:   596 NHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLG 655
             N I G++P  I             N+L G++PS +  L  LEYLDLSSNR S+ IP +L 
Sbjct:   512 NRITGELPESISNINRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLN 571

Query:   656 NLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSH 715
             NL +L+Y+NLS N   Q IP  L KL  L  LDLS+N L  EI SQ  ++++LE L+LSH
Sbjct:   572 NLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQFRSLQNLERLDLSH 631

Query:   716 NNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDI---KG 772
             NNLS  IP  F++M  L ++D+S+N L GPIP++ AF +A  +A +GN+ LCG +   +G
Sbjct:   632 NNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNAPPDAFEGNKDLCGSVNTTQG 691

Query:   773 FQSCK---ASKSHKPASRKIWVVIVFPLLGTVXXXXXXXXXXXXXXXXKNALQTLQSSPR 829
              + C    + KSHK   R + + I+ P++G +                   ++    S  
Sbjct:   692 LKPCSITSSKKSHK--DRNLIIYILVPIIGAIIILSVCAGIFICFRKRTKQIEEHTDSES 749

Query:   830 GTRGFLSVLTFEGKIVYEEIIR 851
             G    LS+ +F+GK+ Y+EII+
Sbjct:   750 GGET-LSIFSFDGKVRYQEIIK 770

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 1028 (366.9 bits), Expect = 8.6e-104, P = 8.6e-104
 Identities = 255/635 (40%), Positives = 340/635 (53%)

Query:   136 LDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPI 195
             L+LSS   SG + P IG L  LK L LS N  SG+IP +IG+ S +E L L  NQ  G I
Sbjct:    78 LNLSSMVLSGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEI 137

Query:   196 PHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSS 255
             P E+G L SL  L + +N + GS+P  +GNL +L+ L  ++N++SG +P  IGNLK L+S
Sbjct:   138 PVEIGKLVSLENLIIYNNRISGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTS 197

Query:   256 LALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSI 315
                G N + GS+P  +G   +L  L L  N  S  +P EIG LK LS + L EN  +G I
Sbjct:   198 FRAGQNMISGSLPSEIGGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFI 257

Query:   316 PLSXXXXXXXXXXXXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAA 375
             P                    G IP E+G+L+SL  L L  N L+ +IP  +GNL+    
Sbjct:   258 PREISNCTSLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIE 317

Query:   376 FYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSI 435
                 +N+L+G IP E+GN++ L  L L EN+L+G+IP  L  L NL+ L L  N L G I
Sbjct:   318 IDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPI 377

Query:   436 PREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTM 495
             P     L+ LF LQL  N LS +I   LG  + + +L + DN LSG IP  L     + +
Sbjct:   378 PLGFQYLRGLFMLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMII 437

Query:   496 LTLSDNQLQGSIPXXXXX-XXXXXXXXXXXHLTCNISESFGIHPKLTFIDLSHNNFYGQI 554
             L L  N L G+IP                 +L      +      +T I+L  N F G I
Sbjct:   438 LNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSI 497

Query:   555 SSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGXXXXXXX 614
               + G C  L    ++ N   G LP EIG  SQL  +++S+N + G++PSEI        
Sbjct:   498 PREVGNCSALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQR 557

Query:   615 XXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEI 674
                  N   G LPSE+GSL QLE L LS+N LS +IP +LGNL +L  L +  N F   I
Sbjct:   558 LDMCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSI 617

Query:   675 PIKLEKLIHLS-ELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLL 733
             P +L  L  L   L+LS+N L  EIP ++ N+  LE L L++NNLS  IP  F  ++ LL
Sbjct:   618 PRELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLL 677

Query:   734 YIDISYNELHGPIPNSTAFSDALMEALQGNEGLCG 768
               + SYN L GPIP     S   M +  GNEGLCG
Sbjct:   678 GYNFSYNSLTGPIPLLRNIS---MSSFIGNEGLCG 709

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1003 (358.1 bits), Expect = 3.6e-103, Sum P(2) = 3.6e-103
 Identities = 256/706 (36%), Positives = 356/706 (50%)

Query:    68 ISPCAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQI 127
             ISP  WFG   N +     ++L++  L G +   + S+   L  L L  NQ+ G IP Q+
Sbjct:    87 ISP--WFGRFDNLI----HLDLSSNNLVGPIPT-ALSNLTSLESLFLFSNQLTGEIPSQL 139

Query:   128 GNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLF 187
             G++  ++ L +  N   G IP  +GNL  L+ L L++ + +G IP Q+G L  +++L L 
Sbjct:   140 GSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQ 199

Query:   188 KNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEI 247
              N L GPIP E+G  S L       N L G+IP  LG L NL IL L NNSL+G IPS++
Sbjct:   200 DNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQL 259

Query:   248 GNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELG 307
             G +  L  L+L  N+L G IP  L +L NL TL L  N+ +  IP E  N+  L  L L 
Sbjct:   260 GEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLA 319

Query:   308 ENRLNGSIPLSX-XXXXXXXXXXXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHY 366
              N L+GS+P S                   G IP E+   +SL  L+L++N L+ SIP  
Sbjct:   320 NNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEA 379

Query:   367 LGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYL 426
             L  L  L   YL+ N+L G++   I NL +L  L L  N L G +P  +  L  L +L+L
Sbjct:   380 LFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFL 439

Query:   427 HSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEE 486
             + N   G IP+EIGN  SL  + +  N     I  S+G L  + LL L  N L G +P  
Sbjct:   440 YENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPAS 499

Query:   487 LGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXH-LTCNISESFGIHPKLTFIDL 545
             LGN  +L +L L+DNQL GSIP                + L  N+ +S      LT I+L
Sbjct:   500 LGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINL 559

Query:   546 SHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSE 605
             SHN   G I    G    L +FDV+ N     +P E+G+S  L  + L  N + GKIP  
Sbjct:   560 SHNRLNGTIHPLCGSSSYL-SFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWT 618

Query:   606 IGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNL 665
             +G            N L G +P +L    +L ++DL++N LS  IP  LG L +L  L L
Sbjct:   619 LGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKL 678

Query:   666 STNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRC 725
             S+NQF++ +P +L     L  L L  N L   IP +I N+ +L +LNL  N  S  +P+ 
Sbjct:   679 SSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQA 738

Query:   726 FEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQ-GNEGLCGDI 770
               +++ L  + +S N L G IP        L  AL        GDI
Sbjct:   739 MGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDI 784

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1002 (357.8 bits), Expect = 4.9e-101, P = 4.9e-101
 Identities = 254/685 (37%), Positives = 351/685 (51%)

Query:    81 VGRVNS---INLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLD 137
             +GR N+   I+L++  L G +     +    L  L L  N + G IP Q+G++  LK L 
Sbjct:    91 IGRFNNLIHIDLSSNRLVGPIPTTLSNLSSSLESLHLFSNLLSGDIPSQLGSLVNLKSLK 150

Query:   138 LSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPH 197
             L  N  +GTIP   GNL  L+ L L++ + +G IP + G L  ++ L L  N+L GPIP 
Sbjct:   151 LGDNELNGTIPETFGNLVNLQMLALASCRLTGLIPSRFGRLVQLQTLILQDNELEGPIPA 210

Query:   198 EVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLA 257
             E+G  +SL   A   N L GS+P  L  L NL  L L +NS SG IPS++G+L S+  L 
Sbjct:   211 EIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQYLN 270

Query:   258 LGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPL 317
             L  N+L G IP  L  L NL TL L +N+ +  I  E   +  L  L L +NRL+GS+P 
Sbjct:   271 LIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPK 330

Query:   318 SX-XXXXXXXXXXXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAF 376
             +                   G IP+EI N +SL  L+L++N L+  IP  L  L  L   
Sbjct:   331 TICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNL 390

Query:   377 YLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIP 436
             YL  NSL G++ S I NL +L    L  N L G +P  +G L  L I+YL+ N   G +P
Sbjct:   391 YLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMP 450

Query:   437 REIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTML 496
              EIGN   L E+    N+LS  I  S+G L  +T L L +N L G IP  LGN  ++T++
Sbjct:   451 VEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVI 510

Query:   497 TLSDNQLQGSIPXXXXXXXXXXXXXXXXH-LTCNISESFGIHPKLTFIDLSHNNFYGQIS 555
              L+DNQL GSIP                + L  N+ +S      LT I+ S N F G IS
Sbjct:   511 DLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSIS 570

Query:   556 SDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGXXXXXXXX 615
                G    L +FDV+ N   G +P E+G S+ L  + L  N   G+IP   G        
Sbjct:   571 PLCGSSSYL-SFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLL 629

Query:   616 XXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIP 675
                 N L G +P ELG   +L ++DL++N LS  IP  LG L  L  L LS+N+F+  +P
Sbjct:   630 DISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLP 689

Query:   676 IKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYI 735
              ++  L ++  L L  N L   IP +I N+++L  LNL  N LS  +P    +++ L  +
Sbjct:   690 TEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFEL 749

Query:   736 DISYNELHGPIPNSTAFSDALMEAL 760
              +S N L G IP        L  AL
Sbjct:   750 RLSRNALTGEIPVEIGQLQDLQSAL 774

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2182870 EMS1 "EXCESS MICROSPOROCYTES1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1001 (357.4 bits), Expect = 6.2e-101, P = 6.2e-101
 Identities = 261/725 (36%), Positives = 361/725 (49%)

Query:    67 KISPCAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQ 126
             KI P  W   +  H+    +++L+   L G L     S  P L YLDL  N   G +PP 
Sbjct:   104 KIPPEIW---NLKHL---QTLDLSGNSLTGLLPRL-LSELPQLLYLDLSDNHFSGSLPPS 156

Query:   127 IG-NISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALH 185
                ++  L  LD+S+NS SG IPP+IG LS L  LY+  N FSG+IP +IG++S ++   
Sbjct:   157 FFISLPALSSLDVSNNSLSGEIPPEIGKLSNLSNLYMGLNSFSGQIPSEIGNISLLKNFA 216

Query:   186 LFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPS 245
                   +GP+P E+  L  L +L L+ N LK SIP S G L NL+IL L +  L G IP 
Sbjct:   217 APSCFFNGPLPKEISKLKHLAKLDLSYNPLKCSIPKSFGELHNLSILNLVSAELIGLIPP 276

Query:   246 EIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILE 305
             E+GN KSL SL L  N L G +PL L  +  L T     N  S S+PS +G  K L  L 
Sbjct:   277 ELGNCKSLKSLMLSFNSLSGPLPLELSEIPLL-TFSAERNQLSGSLPSWMGKWKVLDSLL 335

Query:   306 LGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPH 365
             L  NR +G IP                    GSIP E+    SL  ++L+ N LS +I  
Sbjct:   336 LANNRFSGEIPHEIEDCPMLKHLSLASNLLSGSIPRELCGSGSLEAIDLSGNLLSGTIEE 395

Query:   366 YLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILY 425
                  ++L    L  N ++GSIP ++  L  ++ LDL  N  +G IP SL   TNL    
Sbjct:   396 VFDGCSSLGELLLTNNQINGSIPEDLWKLPLMA-LDLDSNNFTGEIPKSLWKSTNLMEFT 454

Query:   426 LHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPE 485
                N L G +P EIGN  SL  L L DN+L+  I   +G LT +++L L  N   G IP 
Sbjct:   455 ASYNRLEGYLPAEIGNAASLKRLVLSDNQLTGEIPREIGKLTSLSVLNLNANMFQGKIPV 514

Query:   486 ELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXX-XXXXXXHLTCNISE--SFGIH----P 538
             ELG+   LT L L  N LQG IP                 +L+ +I    S   H    P
Sbjct:   515 ELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMP 574

Query:   539 KLTFI------DLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVID 592
              L+F+      DLS+N   G I  + G+C  L    +S N++ G +P  +   + L ++D
Sbjct:   575 DLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSRLTNLTILD 634

Query:   593 LSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPR 652
             LS N + G IP E+G            NQL G +P   G L  L  L+L+ N+L   +P 
Sbjct:   635 LSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPA 694

Query:   653 SLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLN 712
             SLGNL +L +++LS N    E+  +L  +  L  L +  N    EIPS++ N+  LE L+
Sbjct:   695 SLGNLKELTHMDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLD 754

Query:   713 LSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKG 772
             +S N LS  IP     +  L +++++ N L G +P+     D     L GN+ LCG + G
Sbjct:   755 VSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVPSDGVCQDPSKALLSGNKELCGRVVG 814

Query:   773 FQSCK 777
                CK
Sbjct:   815 -SDCK 818

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009556 "microsporogenesis" evidence=IMP

GO:0010234 "tapetal cell fate specification" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
 Identities = 241/651 (37%), Positives = 332/651 (50%)

Query:   136 LDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPI 195
             LDLSS + SG + P IG L  L +L L+ N  +G IP +IG+ S +E + L  NQ  G I
Sbjct:    90 LDLSSMNLSGIVSPSIGGLVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQFGGSI 149

Query:   196 PHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSS 255
             P E+  LS L    + +N L G +P  +G+L NL  L  + N+L+G +P  +GNL  L++
Sbjct:   150 PVEINKLSQLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTT 209

Query:   256 LALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSI 315
                G N   G+IP  +G   NL  L L  N  S  +P EIG L  L  + L +N+ +G I
Sbjct:   210 FRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFI 269

Query:   316 PLSXXXXXXXXXXXXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAA 375
             P                    G IPSEIGN+KSL  L L  N+L+ +IP  LG L+ +  
Sbjct:   270 PKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVME 329

Query:   376 FYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSI 435
                 +N LSG IP E+  +  L  L L +NKL+G IP+ L  L NLA L L  N+L G I
Sbjct:   330 IDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPI 389

Query:   436 PREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTM 495
             P    NL S+ +LQL  N LS  I   LG  + + ++   +N LSG IP  +     L +
Sbjct:   390 PPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSNLIL 449

Query:   496 LTLSDNQLQGSIPXXXXXXXXXXXXXXXXH-LTCNISESFGIHPKLTFIDLSHNNFYGQI 554
             L L  N++ G+IP                + LT            L+ I+L  N F G +
Sbjct:   450 LNLGSNRIFGNIPPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPL 509

Query:   555 SSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGXXXXXXX 614
               + G C  L    ++ N    +LP EI   S L   ++S+N + G IPSEI        
Sbjct:   510 PPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQR 569

Query:   615 XXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEI 674
                  N   G LP ELGSL QLE L LS NR S +IP ++GNL  L  L +  N F   I
Sbjct:   570 LDLSRNSFIGSLPPELGSLHQLEILRLSENRFSGNIPFTIGNLTHLTELQMGGNLFSGSI 629

Query:   675 PIKLEKLIHLS-ELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLL 733
             P +L  L  L   ++LS+N    EIP +I N+  L  L+L++N+LS  IP  FE ++ LL
Sbjct:   630 PPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSLL 689

Query:   734 YIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSCKASKSHKP 784
               + SYN L G +P++  F +  + +  GN+GLCG     +SC  S S  P
Sbjct:   690 GCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCGG--HLRSCDPSHSSWP 738

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2131518 AT4G26540 [Arabidopsis thaliana (taxid:3702)]

 Score = 961 (343.3 bits), Expect = 1.1e-96, P = 1.1e-96
 Identities = 241/645 (37%), Positives = 337/645 (52%)

Query:    36 EEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVGLK 95
             ++  ALL WK+ L  +  G    SW   +    SPC W G+ CN  G V+ I L  + L+
Sbjct:    27 QQGQALLSWKSQL--NISGDAFSSW---HVADTSPCNWVGVKCNRRGEVSEIQLKGMDLQ 81

Query:    96 GTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLS 155
             G+L   S  S   L  L L    + G+IP +IG+ ++L+ LDLS NS SG IP +I  L 
Sbjct:    82 GSLPVTSLRSLKSLTSLTLSSLNLTGVIPKEIGDFTELELLDLSDNSLSGDIPVEIFRLK 141

Query:   156 MLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNF- 214
              LK L L+ N   G IP +IG+LS +  L LF N+LSG IP  +G L +L  L    N  
Sbjct:   142 KLKTLSLNTNNLEGHIPMEIGNLSGLVELMLFDNKLSGEIPRSIGELKNLQVLRAGGNKN 201

Query:   215 LKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNL 274
             L+G +P  +GN  NL +L L   SLSG +P+ IGNLK + ++A+  + L G IP  +G  
Sbjct:   202 LRGELPWEIGNCENLVMLGLAETSLSGKLPASIGNLKRVQTIAIYTSLLSGPIPDEIGYC 261

Query:   275 TNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXX 334
             T L  LYL  NS S SIP+ IG LK L  L L +N L G IP                  
Sbjct:   262 TELQNLYLYQNSISGSIPTTIGGLKKLQSLLLWQNNLVGKIPTELGNCPELWLIDFSENL 321

Query:   335 XXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNL 394
               G+IP   G L++L  L+L+ N++S +IP  L N T L    +  N ++G IPS + NL
Sbjct:   322 LTGTIPRSFGKLENLQELQLSVNQISGTIPEELTNCTKLTHLEIDNNLITGEIPSLMSNL 381

Query:   395 KSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNK 454
             +SL+     +NKL+G+IP SL     L  + L  N+L GSIP+EI  L++L +L L  N 
Sbjct:   382 RSLTMFFAWQNKLTGNIPQSLSQCRELQAIDLSYNSLSGSIPKEIFGLRNLTKLLLLSND 441

Query:   455 LSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXX 514
             LS  I   +GN T++  L L  N L+G IP E+GNL  L  + +S+N+L GSIP      
Sbjct:   442 LSGFIPPDIGNCTNLYRLRLNGNRLAGSIPSEIGNLKNLNFVDISENRLVGSIPPAISGC 501

Query:   515 XXXXXXXXXXHLTCNISESF-GIH-PK-LTFIDLSHNNFYGQISSDWGKCPNLGTFDVSV 571
                       H T ++S S  G   PK L FID S N     +    G    L   +++ 
Sbjct:   502 ESLEFLDL--H-TNSLSGSLLGTTLPKSLKFIDFSDNALSSTLPPGIGLLTELTKLNLAK 558

Query:   572 NNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXXX-NQLFGQLPSEL 630
             N + G +P EI     L +++L  N   G+IP E+G             N+  G++PS  
Sbjct:   559 NRLSGEIPREISTCRSLQLLNLGENDFSGEIPDELGQIPSLAISLNLSCNRFVGEIPSRF 618

Query:   631 GSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIP 675
               L  L  LD+S N+L+ ++   L +L  L  LN+S N F  ++P
Sbjct:   619 SDLKNLGVLDVSHNQLTGNL-NVLTDLQNLVSLNISYNDFSGDLP 662

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

UNIPROTKB|P93194 INRPK1 "Receptor-like protein kinase" [Ipomoea nil (taxid:35883)]

 Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
 Identities = 234/657 (35%), Positives = 327/657 (49%)

Query:   112 LDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRI 171
             L+L    I G   P+I ++  LK + LS N F G+IP Q+GN S+L+ + LS+N F+G I
Sbjct:    73 LNLSSYGISGEFGPEISHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFTGNI 132

Query:   172 PPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAI 231
             P  +G L  +  L LF N L GP P  +  +  L  +  T N L GSIP ++GN++ L  
Sbjct:   133 PDTLGALQNLRNLSLFFNSLIGPFPESLLSIPHLETVYFTGNGLNGSIPSNIGNMSELTT 192

Query:   232 LYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSI 291
             L+L +N  SG +PS +GN+ +L  L L +N L G++P+ L NL NL  L +RNNS   +I
Sbjct:   193 LWLDDNQFSGPVPSSLGNITTLQELYLNDNNLVGTLPVTLNNLENLVYLDVRNNSLVGAI 252

Query:   292 PSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIPSEIGNLKSLSG 351
             P +  + K +  + L  N+  G +P                    G IPS  G L  L  
Sbjct:   253 PLDFVSCKQIDTISLSNNQFTGGLPPGLGNCTSLREFGAFSCALSGPIPSCFGQLTKLDT 312

Query:   352 LELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSI 411
             L LA N  S  IP  LG   ++    L +N L G IP E+G L  L  L L  N LSG +
Sbjct:   313 LYLAGNHFSGRIPPELGKCKSMIDLQLQQNQLEGEIPGELGMLSQLQYLHLYTNNLSGEV 372

Query:   412 PHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTL 471
             P S+  + +L  L L+ N L G +P ++  LK L  L L +N  +  I   LG  + + +
Sbjct:   373 PLSIWKIQSLQSLQLYQNNLSGELPVDMTELKQLVSLALYENHFTGVIPQDLGANSSLEV 432

Query:   472 LALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXHLTCNIS 531
             L L  N  +G IP  L +  KL  L L  N L+GS+P                +      
Sbjct:   433 LDLTRNMFTGHIPPNLCSQKKLKRLLLGYNYLEGSVPSDLGGCSTLERLILEENNLRGGL 492

Query:   532 ESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVI 591
               F     L F DLS NNF G I    G   N+    +S N + GS+PPE+G   +L  +
Sbjct:   493 PDFVEKQNLLFFDLSGNNFTGPIPPSLGNLKNVTAIYLSSNQLSGSIPPELGSLVKLEHL 552

Query:   592 DLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIP 651
             +LS N + G +PSE+             N L G +PS LGSL +L  L L  N  S  IP
Sbjct:   553 NLSHNILKGILPSELSNCHKLSELDASHNLLNGSIPSTLGSLTELTKLSLGENSFSGGIP 612

Query:   652 RSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEML 711
              SL    KL  L L  N    +IP  +  L  L  L+LS N L  ++P  +  ++ LE L
Sbjct:   613 TSLFQSNKLLNLQLGGNLLAGDIP-PVGALQALRSLNLSSNKLNGQLPIDLGKLKMLEEL 671

Query:   712 NLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS-TAFSDALMEALQGNEGLC 767
             ++SHNNLS  + R    +  L +I+IS+N   GP+P S T F ++   +  GN  LC
Sbjct:   672 DVSHNNLSGTL-RVLSTIQSLTFINISHNLFSGPVPPSLTKFLNSSPTSFSGNSDLC 727

GO:0005524 "ATP binding" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=NAS

GO:0019199 "transmembrane receptor protein kinase activity" evidence=NAS

TAIR|locus:2032697 PEPR1 "PEP1 receptor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
 Identities = 242/709 (34%), Positives = 360/709 (50%)

Query:   108 HLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQF 167
             ++A L+   +++ G + P+IG +  L+ LDLS+N+FSGTIP  +GN + L  L LS N F
Sbjct:    76 NVASLNFTRSRVSGQLGPEIGELKSLQILDLSTNNFSGTIPSTLGNCTKLATLDLSENGF 135

Query:   168 SGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLT 227
             S +IP  +  L  +E L+L+ N L+G +P  +  +  L  L L  N L G IP S+G+  
Sbjct:   136 SDKIPDTLDSLKRLEVLYLYINFLTGELPESLFRIPKLQVLYLDYNNLTGPIPQSIGDAK 195

Query:   228 NLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSF 287
              L  L ++ N  SG+IP  IGN  SL  L L  NKL GS+P  L  L NL TL++ NNS 
Sbjct:   196 ELVELSMYANQFSGNIPESIGNSSSLQILYLHRNKLVGSLPESLNLLGNLTTLFVGNNSL 255

Query:   288 SSSIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIPSEIGNLK 347
                +     N K+L  L+L  N   G +P +                  G+IPS +G LK
Sbjct:   256 QGPVRFGSPNCKNLLTLDLSYNEFEGGVPPALGNCSSLDALVIVSGNLSGTIPSSLGMLK 315

Query:   348 SLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKL 407
             +L+ L L++N LS SIP  LGN ++L    L  N L G IPS +G L+ L +L+L EN+ 
Sbjct:   316 NLTILNLSENRLSGSIPAELGNCSSLNLLKLNDNQLVGGIPSALGKLRKLESLELFENRF 375

Query:   408 SGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLT 467
             SG IP  +    +L  L ++ N L G +P E+  +K L    L +N    +I   LG  +
Sbjct:   376 SGEIPIEIWKSQSLTQLLVYQNNLTGELPVEMTEMKKLKIATLFNNSFYGAIPPGLGVNS 435

Query:   468 HMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXHLT 527
              +  +    N L+G IP  L +  KL +L L  N L G+IP                +  
Sbjct:   436 SLEEVDFIGNKLTGEIPPNLCHGRKLRILNLGSNLLHGTIPASIGHCKTIRRFILRENNL 495

Query:   528 CNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQ 587
               +   F     L+F+D + NNF G I    G C NL + ++S N   G +PP++G+   
Sbjct:   496 SGLLPEFSQDHSLSFLDFNSNNFEGPIPGSLGSCKNLSSINLSRNRFTGQIPPQLGNLQN 555

Query:   588 LHVIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLS 647
             L  ++LS N + G +P+++             N L G +PS   +   L  L LS NR S
Sbjct:   556 LGYMNLSRNLLEGSLPAQLSNCVSLERFDVGFNSLNGSVPSNFSNWKGLTTLVLSENRFS 615

Query:   648 NSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL---EKLIHLSELDLSHNFLGKEIPSQICN 704
               IP+ L  L KL  L ++ N F  EIP  +   E LI+  +LDLS N L  EIP+++ +
Sbjct:   616 GGIPQFLPELKKLSTLQIARNAFGGEIPSSIGLIEDLIY--DLDLSGNGLTGEIPAKLGD 673

Query:   705 MRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALME--ALQG 762
             +  L  LN+S+NNL+  +    + +  LL++D+S N+  GPIP++      L E  +  G
Sbjct:   674 LIKLTRLNISNNNLTGSLS-VLKGLTSLLHVDVSNNQFTGPIPDNLE-GQLLSEPSSFSG 731

Query:   763 NEGLC---------GDIKGFQSCK-ASKSHKPASRKIWVVIVFPLLGTV 801
             N  LC               + CK  SKS K +    W +++  +L ++
Sbjct:   732 NPNLCIPHSFSASNNSRSALKYCKDQSKSRK-SGLSTWQIVLIAVLSSL 779

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0001653 "peptide receptor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0045087 "innate immune response" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0004383 "guanylate cyclase activity" evidence=IDA

GO:0006955 "immune response" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	893
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-115
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-23
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-19
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-14
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-13
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-12
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-07
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	7e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-05
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  374 bits (963), Expect = e-115
 Identities = 258/674 (38%), Positives = 345/674 (51%), Gaps = 85/674 (12%)

Query: 153 NLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLS-SLNELALT 211
           N S +  + LS    SG+I   I  L YI+ ++L  NQLSGPIP ++   S SL  L L+
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 212 SNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFL 271
           +N   GSIP   G++ NL  L L NN LSG IP++IG+  SL  L LG N L G IP  L
Sbjct: 127 NNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184

Query: 272 GNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLY 331
            NLT                        SL  L L  N+L G IP  LG + +L  +YL 
Sbjct: 185 TNLT------------------------SLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220

Query: 332 TNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI 391
            N+LSG IP EIG L SL+ L+L  N L+  IP  LGNL NL   +LY+N LSG IP  I
Sbjct: 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI 280

Query: 392 GNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLG 451
            +L+ L +LDLS+N LSG IP  +  L NL IL+L SN   G IP  + +L  L  LQL 
Sbjct: 281 FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW 340

Query: 452 DNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-NL 510
            NK S  I  +LG   ++T+L L  N L+G IPE L +   L  L L  N L+G IP +L
Sbjct: 341 SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL 400

Query: 511 RNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVS 570
               +L R+RL  N  +  +   F   P + F+D+S+NN  G+I+S     P+L    ++
Sbjct: 401 GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA 460

Query: 571 VNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSEL 630
            N   G LP   G S +L  +DLS N   G +P ++G LS L++L L  N+L G++P EL
Sbjct: 461 RNKFFGGLPDSFG-SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL 519

Query: 631 GSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLS 690
            S  +L  LDLS N+LS  IP S                   E+P+       LS+LDLS
Sbjct: 520 SSCKKLVSLDLSHNQLSGQIPASFS-----------------EMPV-------LSQLDLS 555

Query: 691 HNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNST 750
            N L  EIP  + N+ SL  +N+SHN+L                        HG +P++ 
Sbjct: 556 QNQLSGEIPKNLGNVESLVQVNISHNHL------------------------HGSLPSTG 591

Query: 751 AFSDALMEALQGNEGLCGDIK--GFQSCKASKSHKPASRKIWVVIVFPLLGTVALLISLI 808
           AF      A+ GN  LCG     G   CK     +      W   +   LG   L+++L+
Sbjct: 592 AFLAINASAVAGNIDLCGGDTTSGLPPCK-----RVRKTPSWWFYITCTLG-AFLVLALV 645

Query: 809 ALFFIFRRRKNALQ 822
           A  F+F R +N L+
Sbjct: 646 AFGFVFIRGRNNLE 659

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  105 bits (264), Expect = 3e-23
 Identities = 69/183 (37%), Positives = 103/183 (56%), Gaps = 2/183 (1%)

Query: 84  VNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSF 143
           V  ++++N  L+G ++   +   P L  L L  N+ FG +P   G+  +L+ LDLS N F
Sbjct: 430 VYFLDISNNNLQGRINSRKWD-MPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQF 487

Query: 144 SGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLS 203
           SG +P ++G+LS L  L LS N+ SG IP ++     + +L L  NQLSG IP     + 
Sbjct: 488 SGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMP 547

Query: 204 SLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKL 263
            L++L L+ N L G IP +LGN+ +L  + + +N L GS+PS    L   +S   GN  L
Sbjct: 548 VLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDL 607

Query: 264 CGS 266
           CG 
Sbjct: 608 CGG 610

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 92.2 bits (229), Expect = 4e-19
 Identities = 56/156 (35%), Positives = 79/156 (50%), Gaps = 21/156 (13%)

Query: 31  YSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCA-----WFGIHC---NHVG 82
                EEV AL   K+SL        LP     N     PC      W G  C   +  G
Sbjct: 367 SKTLLEEVSALQTLKSSLG-------LPLRFGWNG---DPCVPQQHPWSGADCQFDSTKG 416

Query: 83  R--VNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSS 140
           +  ++ + L N GL+G + +   S   HL  ++L  N I G IPP +G+I+ L+ LDLS 
Sbjct: 417 KWFIDGLGLDNQGLRGFIPN-DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSY 475

Query: 141 NSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIG 176
           NSF+G+IP  +G L+ L+ L L+ N  SGR+P  +G
Sbjct: 476 NSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 81.4 bits (201), Expect = 8e-16
 Identities = 41/89 (46%), Positives = 56/89 (62%)

Query: 232 LYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSI 291
           L L N  L G IP++I  L+ L S+ L  N + G+IP  LG++T+L+ L L  NSF+ SI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 292 PSEIGNLKSLSILELGENRLNGSIPLSLG 320
           P  +G L SL IL L  N L+G +P +LG
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 79.1 bits (195), Expect = 5e-15
 Identities = 40/93 (43%), Positives = 57/93 (61%)

Query: 180 YIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSL 239
           +I+ L L    L G IP+++  L  L  + L+ N ++G+IPPSLG++T+L +L L  NS 
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 240 SGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLG 272
           +GSIP  +G L SL  L L  N L G +P  LG
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 78.7 bits (194), Expect = 6e-15
 Identities = 40/92 (43%), Positives = 55/92 (59%)

Query: 253 LSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLN 312
           +  L L N  L G IP  +  L +L ++ L  NS   +IP  +G++ SL +L+L  N  N
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 313 GSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIG 344
           GSIP SLG LT+L  L L  NSLSG +P+ +G
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 77.9 bits (192), Expect = 1e-14
 Identities = 41/97 (42%), Positives = 57/97 (58%), Gaps = 1/97 (1%)

Query: 383 LSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNL 442
           L G IP++I  L+ L +++LS N + G+IP SLG++T+L +L L  N+  GSIP  +G L
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 443 KSLFELQLGDNKLSNSISHSLGN-LTHMTLLALYDNA 478
            SL  L L  N LS  +  +LG  L H       DNA
Sbjct: 490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 77.5 bits (191), Expect = 1e-14
 Identities = 58/192 (30%), Positives = 82/192 (42%), Gaps = 30/192 (15%)

Query: 639 LDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEI 698
           L L +  L   IP  +  L  L  +NLS N     IP  L  +  L  LDLS+N     I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 699 PSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALME 758
           P  +  + SL +LNL+ N+LS  +P     + G L        LH    N   F+D    
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP---AALGGRL--------LHRASFN---FTD---- 524

Query: 759 ALQGNEGLCGDIKGFQSCKASKSHKPASRKIWVVIVFPLLGTVALLISLIALFFIFRRRK 818
               N GLCG I G ++C     H     KI +        +VA L  +I     ++RR+
Sbjct: 525 ----NAGLCG-IPGLRAC---GPHLSVGAKIGIA----FGVSVAFLFLVICAMCWWKRRQ 572

Query: 819 NALQTLQSSPRG 830
           N L+  + + R 
Sbjct: 573 NILRAQRIAARE 584

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 77.5 bits (191), Expect = 1e-14
 Identities = 40/92 (43%), Positives = 57/92 (61%)

Query: 349 LSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLS 408
           + GL L +  L   IP+ +  L +L +  L  NS+ G+IP  +G++ SL  LDLS N  +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 409 GSIPHSLGNLTNLAILYLHSNTLLGSIPREIG 440
           GSIP SLG LT+L IL L+ N+L G +P  +G
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 76.8 bits (189), Expect = 3e-14
 Identities = 39/92 (42%), Positives = 53/92 (57%)

Query: 277 LDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLS 336
           +D L L N      IP++I  L+ L  + L  N + G+IP SLG++T+L+ L L  NS +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 337 GSIPSEIGNLKSLSGLELADNELSSSIPHYLG 368
           GSIP  +G L SL  L L  N LS  +P  LG
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 74.2 bits (182), Expect = 7e-14
 Identities = 107/336 (31%), Positives = 158/336 (47%), Gaps = 12/336 (3%)

Query: 410 SIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHM 469
           S   S      L+    H+     ++     NL+S+   +L  N  SN++     +L+ +
Sbjct: 10  SALSSNTLREVLSSNTYHTTPQSINLNFPDSNLESVAVNRLALNLSSNTLLLLPSSLSRL 69

Query: 470 TLLALYDNAL--SGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLT 527
             L L   +   S    E L NL+ L  L L+ N+L+ +I  L  LTNL  L L+ N++T
Sbjct: 70  LSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNIT 129

Query: 528 CNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQ 587
                   +   L  +DLS N     + S     PNL   D+S N++   LP  + + S 
Sbjct: 130 DIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSN 187

Query: 588 LHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLS 647
           L+ +DLS N I   +P EI  LS+L +L L  N +  +L S L +L  L  L+LS+N+L 
Sbjct: 188 LNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE 245

Query: 648 NSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRS 707
           + +P S+GNL  L  L+LS NQ I  I   L  L +L ELDLS N L   +P     +  
Sbjct: 246 D-LPESIGNLSNLETLDLSNNQ-ISSIS-SLGSLTNLRELDLSGNSLSNALPLIALLLLL 302

Query: 708 LEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 743
           LE+L    N L        +  + LL  +I  N   
Sbjct: 303 LELLL---NLLLTLKALELKLNSILLNNNILSNGET 335

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 74.9 bits (184), Expect = 1e-13
 Identities = 44/102 (43%), Positives = 60/102 (58%), Gaps = 3/102 (2%)

Query: 169 GRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTN 228
           G IP  I  L ++++++L  N + G IP  +G ++SL  L L+ N   GSIP SLG LT+
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 229 LAILYLHNNSLSGSIPSEIGN--LKSLSSLALGNNKLCGSIP 268
           L IL L+ NSLSG +P+ +G   L   S     N  LCG IP
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG-IP 532

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 74.1 bits (182), Expect = 1e-13
 Identities = 44/113 (38%), Positives = 62/113 (54%), Gaps = 1/113 (0%)

Query: 325 LDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLS 384
           +D L L    L G IP++I  L+ L  + L+ N +  +IP  LG++T+L    L  NS +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 385 GSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGN-LTNLAILYLHSNTLLGSIP 436
           GSIP  +G L SL  L+L+ N LSG +P +LG  L + A      N  L  IP
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 73.8 bits (181), Expect = 1e-13
 Identities = 109/342 (31%), Positives = 149/342 (43%), Gaps = 16/342 (4%)

Query: 85  NSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGI--IPPQIGNISKLKYLDLSSNS 142
            ++N   + L         SS   L  LDL              + N+  L  LDL+ N 
Sbjct: 45  VAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNR 104

Query: 143 FSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSY-IEALHLFKNQLSGPIPHEVGG 201
               I   +  L+ L  L L  N  +  IPP IG L   ++ L L  N++   +P  +  
Sbjct: 105 LRSNISE-LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRN 161

Query: 202 LSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNN 261
           L +L  L L+ N L   +P  L NL+NL  L L  N +S  +P EI  L +L  L L NN
Sbjct: 162 LPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNN 219

Query: 262 KLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGN 321
            +   +   L NL NL  L L NN     +P  IGNL +L  L+L  N++  S   SLG+
Sbjct: 220 SII-ELLSSLSNLKNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNNQI--SSISSLGS 275

Query: 322 LTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKN 381
           LTNL  L L  NSLS ++P     L     LEL  N L +     L   + L    +  N
Sbjct: 276 LTNLRELDLSGNSLSNALPLIALLLLL---LELLLNLLLTLKALELKLNSILLNNNILSN 332

Query: 382 SLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAI 423
               S P  +  L+SL+NL   +N L  S  +        AI
Sbjct: 333 GE-TSSPEALSILESLNNLWTLDNALDESNLNRYIVKNPNAI 373

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.0 bits (174), Expect = 1e-12
 Identities = 34/91 (37%), Positives = 53/91 (58%)

Query: 543 IDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKI 602
           + L +    G I +D  K  +L + ++S N+I G++PP +G  + L V+DLS N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 603 PSEIGKLSSLIKLILRRNQLFGQLPSELGSL 633
           P  +G+L+SL  L L  N L G++P+ LG  
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 69.2 bits (169), Expect = 3e-12
 Identities = 90/243 (37%), Positives = 131/243 (53%), Gaps = 8/243 (3%)

Query: 285 NSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIG 344
           ++    +PS +  L SL +L       +     +L NL  L +L L  N L  +I SE+ 
Sbjct: 56  SNTLLLLPSSLSRLLSLDLLSPSGIS-SLDGSENLLNLLPLPSLDLNLNRLRSNI-SELL 113

Query: 345 NLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSE 404
            L +L+ L+L +N ++   P      +NL    L  N +  S+PS + NL +L NLDLS 
Sbjct: 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172

Query: 405 NKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLG 464
           N LS  +P  L NL+NL  L L  N +   +P EI  L +L EL L +N +   +S SL 
Sbjct: 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLS-SLS 229

Query: 465 NLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRN 524
           NL +++ L L +N L   +PE +GNL  L  L LS+NQ+  SI +L +LTNL  L L+ N
Sbjct: 230 NLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS-SISSLGSLTNLRELDLSGN 287

Query: 525 HLT 527
            L+
Sbjct: 288 SLS 290

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.1 bits (169), Expect = 5e-12
 Identities = 36/89 (40%), Positives = 50/89 (56%)

Query: 208 LALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSI 267
           L L +  L+G IP  +  L +L  + L  NS+ G+IP  +G++ SL  L L  N   GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 268 PLFLGNLTNLDTLYLRNNSFSSSIPSEIG 296
           P  LG LT+L  L L  NS S  +P+ +G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.8 bits (163), Expect = 3e-11
 Identities = 38/94 (40%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 600 GKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVK 659
           G IP++I KL  L  + L  N + G +P  LGS+  LE LDLS N  + SIP SLG L  
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 660 LHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHN 692
           L  LNL+ N     +P  L  +L+H +  + + N
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.8 bits (158), Expect = 1e-10
 Identities = 33/85 (38%), Positives = 48/85 (56%)

Query: 424 LYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVI 483
           L L +  L G IP +I  L+ L  + L  N +  +I  SLG++T + +L L  N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 484 PEELGNLVKLTMLTLSDNQLQGSIP 508
           PE LG L  L +L L+ N L G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.4 bits (149), Expect = 1e-09
 Identities = 32/80 (40%), Positives = 43/80 (53%)

Query: 576 GSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQ 635
           G +P +I     L  I+LS N I G IP  +G ++SL  L L  N   G +P  LG L  
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 636 LEYLDLSSNRLSNSIPRSLG 655
           L  L+L+ N LS  +P +LG
Sbjct: 492 LRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 62/271 (22%), Positives = 95/271 (35%), Gaps = 59/271 (21%)

Query: 481 GVIPEELGNLVKLTMLTLSDNQLQ----GSIPNLRNLTNLIRLRLNRN--------HLTC 528
             + + L     L  L LSDN L     G + +L   ++L  L+LN N         L  
Sbjct: 71  QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130

Query: 529 NISESFGIHPKLTFIDLSHNNFYGQISSDWGK----CPNLGTFDVSVNNI----IGSLPP 580
            + +     P L  + L  N   G       K      +L   +++ N I    I +L  
Sbjct: 131 GLKDL---PPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187

Query: 581 EIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLD 640
            +  +  L V+DL+ N +          L+  +                  SL  LE L+
Sbjct: 188 GLKANCNLEVLDLNNNGL---TDEGASALAETLA-----------------SLKSLEVLN 227

Query: 641 LSSNRLSNSI-----PRSLGNLVKLHYLNLSTNQFIQEIPIKL-----EKLIHLSELDLS 690
           L  N L+++         L   + L  L+LS N    +    L     EK   L ELDL 
Sbjct: 228 LGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLL-ELDLR 286

Query: 691 HNFLGKEI-----PSQICNMRSLEMLNLSHN 716
            N  G+E       S +     LE L +  +
Sbjct: 287 GNKFGEEGAQLLAESLLEPGNELESLWVKDD 317

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 36 EEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCN 79
          ++  ALL +K+SL N D    L SW  ++     PC+W G+ C+
Sbjct: 3  DDRDALLAFKSSL-NGDPSGALSSWNPSS---SDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.7 bits (104), Expect = 7e-06
 Identities = 21/60 (35%), Positives = 32/60 (53%)

Query: 683 HLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 742
           +L  LDLS+N L          + +L++L+LS NNL+   P  F  +  L  +D+S N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.7 bits (116), Expect = 1e-05
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 500 DNQ-LQGSIPN-LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSD 557
           DNQ L+G IPN +  L +L  + L+ N +  NI  S G    L  +DLS+N+F G I   
Sbjct: 426 DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485

Query: 558 WGKCPNLGTFDVSVNNIIGSLPPEIG 583
            G+  +L   +++ N++ G +P  +G
Sbjct: 486 LGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.0 bits (109), Expect = 8e-05
 Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 2/103 (1%)

Query: 472 LALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTCNI 530
           L L +  L G IP ++  L  L  + LS N ++G+IP +L ++T+L  L L+ N    +I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 531 SESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGT-FDVSVN 572
            ES G    L  ++L+ N+  G++ +  G        F+ + N
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 80/277 (28%), Positives = 115/277 (41%), Gaps = 24/277 (8%)

Query: 250 LKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGEN 309
           L  L ++ L  +K    IP  L   TNL+TL L + S    +PS I  L  L  L++   
Sbjct: 633 LTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC 691

Query: 310 RLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGN 369
                +P  + NL +L  L L   S   S P    N+  L   E A  E  S++   L N
Sbjct: 692 ENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLR--LEN 748

Query: 370 LTNLAAFYLYKNSLSGSIPSEIGNLK----SLSNLDLSENKLSGSIPHSLGNLTNLAILY 425
           L  L    +    L   +      +     SL+ L LS+      +P S+ NL  L  L 
Sbjct: 749 LDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLE 808

Query: 426 LHSNTLLGSIPREIGNLKSLFELQL-GDNKLSN--SISHSLGNLTHMTLLALYDNALSGV 482
           + +   L ++P  I NL+SL  L L G ++L     IS      T+++ L L    +  V
Sbjct: 809 IENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS------TNISDLNLSRTGIEEV 861

Query: 483 IP---EELGNLVKLTMLTLSDNQLQGSIPNLRNLTNL 516
            P   E+  NL  L M     N LQ    N+  L +L
Sbjct: 862 -PWWIEKFSNLSFLDMNGC--NNLQRVSLNISKLKHL 895

syringae 6; Provisional. Length = 1153

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 17/124 (13%)

Query: 636 LEYLDLSSNRLSNSIPRSLGNLV----KLHYLNLSTNQF----IQEIPIKLEKLIHLSEL 687
           LE L L  NRL  +   +L   +     L  LNL+ N      I+ +   L+   +L  L
Sbjct: 139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVL 198

Query: 688 DLSHNFLGKEIPSQIC----NMRSLEMLNLSHNNLSDFIPRCF-----EEMNGLLYIDIS 738
           DL++N L  E  S +     +++SLE+LNL  NNL+D                LL + +S
Sbjct: 199 DLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS 258

Query: 739 YNEL 742
            N++
Sbjct: 259 CNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 19/60 (31%), Positives = 29/60 (48%)

Query: 444 SLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQL 503
           +L  L L +N+L+     +   L ++ +L L  N L+ + PE    L  L  L LS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 635 QLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIK-LEKLIHLSELDLSHN 692
            L+ LDLS+NRL+     +   L  L  L+LS N  +  I  +    L  L  LDLS N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNN-LTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 45/178 (25%), Positives = 69/178 (38%), Gaps = 21/178 (11%)

Query: 301 LSILELGENRLN-GSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLE---LAD 356
           LS+ E G       S+   L     L  L L  N+L       + +L   S L+   L +
Sbjct: 58  LSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNN 117

Query: 357 NELSSSI-PHYLGNLT----NLAAFYLYKNSLSG----SIPSEIGNLKSLSNLDLSENKL 407
           N L           L      L    L +N L G    ++   +   + L  L+L+ N +
Sbjct: 118 NGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177

Query: 408 SG----SIPHSLGNLTNLAILYLHSNTL--LGSIPREIG--NLKSLFELQLGDNKLSN 457
                 ++   L    NL +L L++N L   G+        +LKSL  L LGDN L++
Sbjct: 178 GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 22/60 (36%), Positives = 28/60 (46%)

Query: 396 SLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKL 455
           +L +LDLS N+L+     +   L NL +L L  N L    P     L SL  L L  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 20/60 (33%), Positives = 27/60 (45%)

Query: 611 SLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQF 670
           +L  L L  N+L          L  L+ LDLS N L++  P +   L  L  L+LS N  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	893
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.83
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.82
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.6
PLN03150	623	hypothetical protein; Provisional	99.6
PLN03150	623	hypothetical protein; Provisional	99.54
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.12
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.11
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.11
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.07
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.06
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.01
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.99
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.98
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.95
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.91
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.91
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.91
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.9
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.87
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.85
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.75
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.74
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.73
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.71
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.51
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.35
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.21
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.07
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.05
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.01
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.97
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.92
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.88
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.78
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.69
PRK15386	426	type III secretion protein GogB; Provisional	97.66
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.6
PRK15386	426	type III secretion protein GogB; Provisional	97.57
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.33
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.26
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.25
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.17
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.11
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.11
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.91
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.79
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.65
KOG4341	483	consensus F-box protein containing LRR [General fu	96.4
KOG4341	483	consensus F-box protein containing LRR [General fu	96.19
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.0
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.82
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.73
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.73
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.55
KOG4308	478	consensus LRR-containing protein [Function unknown	94.19
KOG4308	478	consensus LRR-containing protein [Function unknown	93.4
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.32
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.28
KOG1187	361	consensus Serine/threonine protein kinase [Signal	89.51
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	88.53
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.19
smart00370	26	LRR Leucine-rich repeats, outliers.	88.19
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	83.36
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	82.75
smart00370	26	LRR Leucine-rich repeats, outliers.	81.98
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	81.98

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.5e-78  Score=751.91  Aligned_cols=591  Identities=40%  Similarity=0.639  Sum_probs=432.7

Q ss_pred             CHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCCccCceeeCCCCCEEEEEcCCCCCccccCCccCCCCCCCCEEE
Q 002679           34 STEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLD  113 (893)
Q Consensus        34 ~~~~~~~ll~~k~~~~~~~~~~~l~~W~~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~  113 (893)
                      .++|++||++||+++.+ + .+.+.+|+    ...+||.|.||+|+..++|+.|+|+++++.|.++ ..|..+++|++|+
T Consensus        27 ~~~~~~~l~~~~~~~~~-~-~~~~~~w~----~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~-~~~~~l~~L~~L~   99 (968)
T PLN00113         27 HAEELELLLSFKSSIND-P-LKYLSNWN----SSADVCLWQGITCNNSSRVVSIDLSGKNISGKIS-SAIFRLPYIQTIN   99 (968)
T ss_pred             CHHHHHHHHHHHHhCCC-C-cccCCCCC----CCCCCCcCcceecCCCCcEEEEEecCCCccccCC-hHHhCCCCCCEEE
Confidence            46899999999999964 5 56789997    5678999999999988899999999999999887 7899999999999


Q ss_pred             CCCCCCCccCCcccc-CCCCCCEEeCCCCCCCCCCCccccCCCCCCeecCCCccCCCCCCCCCCCCCCCCEEeCCCccCC
Q 002679          114 LQVNQIFGIIPPQIG-NISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLS  192 (893)
Q Consensus       114 L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  192 (893)
                      |++|.+.+.+|..+. .+++|++|+|++|.+++.+|.  +.+++|++|+|++|.+.+.+|..++++++|++|++++|.+.
T Consensus       100 Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~  177 (968)
T PLN00113        100 LSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV  177 (968)
T ss_pred             CCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc
Confidence            999999988887654 899999999999999988885  56888999999999988888888888888888888888888


Q ss_pred             CCCCcccCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCCCCCCCCCcCC
Q 002679          193 GPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLG  272 (893)
Q Consensus       193 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~  272 (893)
                      +.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|..++
T Consensus       178 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~  257 (968)
T PLN00113        178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG  257 (968)
T ss_pred             ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh
Confidence            88888888888888888888888777777777777777777777777777777777777777777777777766666666


Q ss_pred             CCCCCCEEEeecCCCCCCCCccccCCCCCCeeecCCCcCCCCCCCCCCCCCCCCEEEccCCCCccccCCCCCCCCCCCeE
Q 002679          273 NLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGL  352 (893)
Q Consensus       273 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  352 (893)
                      ++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+..|..+..+++|+.|
T Consensus       258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  337 (968)
T PLN00113        258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL  337 (968)
T ss_pred             CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEE
Confidence            77777777777776666666666666666666666666666666655566666666666665555555555555555555


Q ss_pred             EccCCcCCCCcccccCCCcccceEecccccCCCCCCccccccccCceeccCCccccccCCccccCCCccceeeccccccc
Q 002679          353 ELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLL  432 (893)
Q Consensus       353 ~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  432 (893)
                      ++++|.+++.                        +|..++.+++|+.|++++|++.+.+|..+..+++|+.|++++|.+.
T Consensus       338 ~L~~n~l~~~------------------------~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~  393 (968)
T PLN00113        338 QLWSNKFSGE------------------------IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE  393 (968)
T ss_pred             ECcCCCCcCc------------------------CChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEec
Confidence            5555555544                        4444455555555555555555555555555556666666666666


Q ss_pred             ccCChhhhcccccccccCCCCCcCCCccccCCCCCccceEEcccCcCcccCCccccCCCCCCEEecCCCcCcCCCCCcCC
Q 002679          433 GSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRN  512 (893)
Q Consensus       433 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~  512 (893)
                      +.+|..+..+++|+.|++++|++++..|..+..++.|+.+++++|.+++.++..+..++                     
T Consensus       394 ~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---------------------  452 (968)
T PLN00113        394 GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP---------------------  452 (968)
T ss_pred             ccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCC---------------------
Confidence            66666666666666666666666666666666777777777777766654443222221                     


Q ss_pred             CCCCCEEEcCCCcCCCCCCccccCCCCCcEEeccCCcccccCCcCcCCCCCccEEEccCCccCCCCCCCcCCCCCccEEE
Q 002679          513 LTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVID  592 (893)
Q Consensus       513 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~  592 (893)
                                                +|+.|++++|++.                                         
T Consensus       453 --------------------------~L~~L~L~~n~~~-----------------------------------------  465 (968)
T PLN00113        453 --------------------------SLQMLSLARNKFF-----------------------------------------  465 (968)
T ss_pred             --------------------------CCcEEECcCceee-----------------------------------------
Confidence                                      2222222222221                                         


Q ss_pred             ccCCcccccCCccccCcccceeEEeccccccCCCcccccCCcccceecCCCCcccccccccccCCCCCCeeecccCcCCc
Q 002679          593 LSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQ  672 (893)
Q Consensus       593 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  672 (893)
                             +.+|..+                         ..++|+.|++++|++++.+|..+.++++|+.|+|++|++.+
T Consensus       466 -------~~~p~~~-------------------------~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  513 (968)
T PLN00113        466 -------GGLPDSF-------------------------GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG  513 (968)
T ss_pred             -------eecCccc-------------------------ccccceEEECcCCccCCccChhhhhhhccCEEECcCCccee
Confidence                   1111111                         11234444555555555555566666677777777777777


Q ss_pred             ccchhhhhccCccccccccccCCCcccccccCCcccceeeCCCCcCCCCCchhhhcCCCCCEEEccCCcccccCCCCccc
Q 002679          673 EIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAF  752 (893)
Q Consensus       673 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ip~~~~~  752 (893)
                      .+|..++.+++|++|+|++|.+++.+|..|..+++|++|||++|++++.+|..+..+++|+.+++++|+++|.+|..++|
T Consensus       514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~  593 (968)
T PLN00113        514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAF  593 (968)
T ss_pred             eCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchh
Confidence            77878888888888888888888888888888999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhhcCCCCCCCCCC--CCCCCC
Q 002679          753 SDALMEALQGNEGLCGDIK--GFQSCK  777 (893)
Q Consensus       753 ~~~~~~~~~gn~~lc~~~~--~~~~C~  777 (893)
                      .++...++.||+.+||..+  ...+|.
T Consensus       594 ~~~~~~~~~~n~~lc~~~~~~~~~~c~  620 (968)
T PLN00113        594 LAINASAVAGNIDLCGGDTTSGLPPCK  620 (968)
T ss_pred             cccChhhhcCCccccCCccccCCCCCc
Confidence            9999999999999998632  234564

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=5.5e-59  Score=578.72  Aligned_cols=497  Identities=39%  Similarity=0.583  Sum_probs=390.8

Q ss_pred             CCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCCCCCCCCCcCC-CCCCCCEEEeecCCCCCCCCccccCCCCCCeee
Q 002679          227 TNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLG-NLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILE  305 (893)
Q Consensus       227 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  305 (893)
                      .+++.|++++|.+++.++..+..+++|+.|++++|.+.+.+|..+. .+++|++|++++|.+++.+|.  +.+++|++|+
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~  146 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD  146 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence            4677888888888877777788888888888888888777776544 777888888888887776664  4567777777


Q ss_pred             cCCCcCCCCCCCCCCCCCCCCEEEccCCCCccccCCCCCCCCCCCeEEccCCcCCCCcccccCCCcccceEecccccCCC
Q 002679          306 LGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSG  385 (893)
Q Consensus       306 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  385 (893)
                      +++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|++.+
T Consensus       147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  226 (968)
T PLN00113        147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG  226 (968)
T ss_pred             CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777776


Q ss_pred             CCCccccccccCceeccCCccccccCCccccCCCccceeecccccccccCChhhhcccccccccCCCCCcCCCccccCCC
Q 002679          386 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGN  465 (893)
Q Consensus       386 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~  465 (893)
                      .+|..++++++|++|++++|.+.+.+|..++++++|+.|++++|.+.+.+|..+.++++|+.|++++|.+.+.+|..+..
T Consensus       227 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~  306 (968)
T PLN00113        227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ  306 (968)
T ss_pred             cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcC
Confidence            66666666677777777777666666666666666666666666666666666666666666666666555555555555


Q ss_pred             CCccceEEcccCcCcccCCccccCCCCCCEEecCCCcCcCCCCCcCCCCCCCEEEcCCCcCCCCCCccccCCCCCcEEec
Q 002679          466 LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDL  545 (893)
Q Consensus       466 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  545 (893)
                      +++|+.|++++|.+.+..|..                       +..+++|+.|++++|.+.+.+|..+..+++|+.|++
T Consensus       307 l~~L~~L~l~~n~~~~~~~~~-----------------------~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L  363 (968)
T PLN00113        307 LQNLEILHLFSNNFTGKIPVA-----------------------LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDL  363 (968)
T ss_pred             CCCCcEEECCCCccCCcCChh-----------------------HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEEC
Confidence            555555555555555444443                       455556666666666666666666777777777777


Q ss_pred             cCCcccccCCcCcCCCCCccEEEccCCccCCCCCCCcCCCCCccEEEccCCcccccCCccccCcccceeEEeccccccCC
Q 002679          546 SHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQ  625 (893)
Q Consensus       546 s~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  625 (893)
                      ++|++++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|.+.+.
T Consensus       364 s~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  443 (968)
T PLN00113        364 STNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR  443 (968)
T ss_pred             CCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCc
Confidence            77777777777777778888888888888888888888888899999999998888888888899999999999999999


Q ss_pred             CcccccCCcccceecCCCCcccccccccccCCCCCCeeecccCcCCcccchhhhhccCccccccccccCCCcccccccCC
Q 002679          626 LPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNM  705 (893)
Q Consensus       626 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  705 (893)
                      +|..+..+++|+.|++++|++.+.+|..++ .++|+.||+++|++++.+|..+.++++|+.|+|++|.+.+.+|..+.++
T Consensus       444 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  522 (968)
T PLN00113        444 INSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC  522 (968)
T ss_pred             cChhhccCCCCcEEECcCceeeeecCcccc-cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCc
Confidence            998888999999999999999998887664 5899999999999999999999999999999999999999999999999


Q ss_pred             cccceeeCCCCcCCCCCchhhhcCCCCCEEEccCCcccccCCCC
Q 002679          706 RSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS  749 (893)
Q Consensus       706 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ip~~  749 (893)
                      ++|++|+|++|.+++.+|..|..+++|+.||+++|+++|.+|..
T Consensus       523 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  566 (968)
T PLN00113        523 KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN  566 (968)
T ss_pred             cCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChh
Confidence            99999999999999999999999999999999999999999964

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.5e-39  Score=335.60  Aligned_cols=375  Identities=24%  Similarity=0.244  Sum_probs=275.2

Q ss_pred             CeEEccCCcCCCCcccccCCCcccceEecccccCCCCCCccccccccCceeccCCccccccCCccccCCCccceeecccc
Q 002679          350 SGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSN  429 (893)
Q Consensus       350 ~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n  429 (893)
                      +.|++++|.+...-+..|.++++|+++++.+|.++ .+|.....                        ..+|+.|+|.+|
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~------------------------sghl~~L~L~~N  135 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE------------------------SGHLEKLDLRHN  135 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc------------------------ccceeEEeeecc
Confidence            44555655555555555555555555555555554 34433333                        334455555555


Q ss_pred             cccccCChhhhcccccccccCCCCCcCCCccccCCCCCccceEEcccCcCcccCCccccCCCCCCEEecCCCcCcCCCC-
Q 002679          430 TLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-  508 (893)
Q Consensus       430 ~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-  508 (893)
                      .+...-.+.+..++.|+.||||.|.++.....+|..-.++++|+|++|+++......|..+.+|..|.|+.|+++...+ 
T Consensus       136 ~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r  215 (873)
T KOG4194|consen  136 LISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQR  215 (873)
T ss_pred             ccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHH
Confidence            5544444455555555555555555555555555555555566666666655555555556666666666666654433 


Q ss_pred             CcCCCCCCCEEEcCCCcCCCCCCccccCCCCCcEEeccCCcccccCCcCcCCCCCccEEEccCCccCCCCCCCcCCCCCc
Q 002679          509 NLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQL  588 (893)
Q Consensus       509 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L  588 (893)
                      .|.+++.|+.|+|..|++...---+|.++++|+.|.+..|.++..-...|..+.++++|+++.|++...-..++.+++.|
T Consensus       216 ~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L  295 (873)
T KOG4194|consen  216 SFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSL  295 (873)
T ss_pred             HhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchh
Confidence            45556666666666666655445567777777777777777776666777778888888888888877777788888889


Q ss_pred             cEEEccCCcccccCCccccCcccceeEEeccccccCCCcccccCCcccceecCCCCcccccccccccCCCCCCeeecccC
Q 002679          589 HVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTN  668 (893)
Q Consensus       589 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N  668 (893)
                      +.|++|+|.+...-++.+..+++|++|+|++|+++...++.|..+..|++|+|++|.+...-..+|..+++|+.|||++|
T Consensus       296 ~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N  375 (873)
T KOG4194|consen  296 EQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSN  375 (873)
T ss_pred             hhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCC
Confidence            99999999888888888888899999999999999999999999999999999999998877788999999999999999


Q ss_pred             cCCcccch---hhhhccCccccccccccCCCcccccccCCcccceeeCCCCcCCCCCchhhhcCCCCCEEEccCCccccc
Q 002679          669 QFIQEIPI---KLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGP  745 (893)
Q Consensus       669 ~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~  745 (893)
                      .++..|..   .|.++++|+.|++.+|++..+....|..+++||.|||.+|.|..+-|..|..+ .|+.|-+..-.|-|.
T Consensus       376 ~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCD  454 (873)
T KOG4194|consen  376 ELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCD  454 (873)
T ss_pred             eEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEe
Confidence            99877654   47889999999999999988778899999999999999999999999999999 899999988888888


Q ss_pred             CCCCc
Q 002679          746 IPNST  750 (893)
Q Consensus       746 ip~~~  750 (893)
                      |.-.|
T Consensus       455 Cql~W  459 (873)
T KOG4194|consen  455 CQLKW  459 (873)
T ss_pred             ccHHH
Confidence            87544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=7.8e-41  Score=334.31  Aligned_cols=477  Identities=31%  Similarity=0.445  Sum_probs=328.1

Q ss_pred             CCCCEEEccCCCCCCCCCCcCCCCCCCCEEEeecCCCCCCCCccccCCCCCCeeecCCCcCCCCCCCCCCCCCCCCEEEc
Q 002679          251 KSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYL  330 (893)
Q Consensus       251 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  330 (893)
                      ..|+.+.+++|.+.. +-..+.++..|.+|++.+|+++ ..|.+++.+..++.++.++|++. .+|+.++.+.+|..+++
T Consensus        45 v~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC  121 (565)
T ss_pred             cchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence            345555555555542 2233445555566666666555 34455555666666666666655 55555666666666666


Q ss_pred             cCCCCccccCCCCCCCCCCCeEEccCCcCCCCcccccCCCcccceEecccccCCCCCCccccccccCceeccCCcccccc
Q 002679          331 YTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGS  410 (893)
Q Consensus       331 ~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  410 (893)
                      +.|.+. .+|+.++.+..++.++..+|+++. .|..+.++.++..+++.+|++....|.. -+++.|++||...|.+. .
T Consensus       122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~-i~m~~L~~ld~~~N~L~-t  197 (565)
T KOG0472|consen  122 SSNELK-ELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALPENH-IAMKRLKHLDCNSNLLE-T  197 (565)
T ss_pred             ccccee-ecCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchhhCCHHH-HHHHHHHhcccchhhhh-c
Confidence            666655 445555666666666666666653 3455556666666666666666433333 33667777777666665 5


Q ss_pred             CCccccCCCccceeecccccccccCChhhhcccccccccCCCCCcCCCccccCCCCCccceEEcccCcCcccCCccccCC
Q 002679          411 IPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNL  490 (893)
Q Consensus       411 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l  490 (893)
                      +|..++.+.+|+.|++..|++. ..| .|.+|..|++++++.|++.........+++++..||+.+|++. ..|..+.-+
T Consensus       198 lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clL  274 (565)
T KOG0472|consen  198 LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLL  274 (565)
T ss_pred             CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHh
Confidence            6666677777777777777766 444 5777777777777777776555555557777777777777776 467777777


Q ss_pred             CCCCEEecCCCcCcCCCCCcCCCCCCCEEEcCCCcCCCCCCccccC-----CCCCcE----EeccCC---cc-cc----c
Q 002679          491 VKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGI-----HPKLTF----IDLSHN---NF-YG----Q  553 (893)
Q Consensus       491 ~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~----L~ls~n---~l-~~----~  553 (893)
                      .+|++||+|+|.+++..+.++++ +|+.|-+.+|++..+-.+.+..     +..|+.    =-++..   .- .+    .
T Consensus       275 rsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~  353 (565)
T KOG0472|consen  275 RSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSE  353 (565)
T ss_pred             hhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCC
Confidence            78888888888888777778887 7888888888764221111100     000110    000000   00 00    0


Q ss_pred             CCcCcCCCCCccEEEccCCccCCCCCCCcCCCCC---ccEEEccCCcccccCCccccCcccceeEEeccccccCCCcccc
Q 002679          554 ISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQ---LHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSEL  630 (893)
Q Consensus       554 ~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~---L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~  630 (893)
                      .........+.+.|+++.-+++ .+|.+......   .+..+++.|++. .+|..+..+..+.+.-...|+..+-+|..+
T Consensus       354 ~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l  431 (565)
T KOG0472|consen  354 SFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLEL  431 (565)
T ss_pred             cccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHH
Confidence            1112234456788888888877 45554433333   789999999997 889888888888766666666667889999


Q ss_pred             cCCcccceecCCCCcccccccccccCCCCCCeeecccCcCCcccchhhhhccCccccccccccCCCcccccccCCcccce
Q 002679          631 GSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEM  710 (893)
Q Consensus       631 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  710 (893)
                      +.+++|..|+|++|.+. .+|..++.+..|+.||+|.|+| ..+|..+..+..|+.+-.++|++....|+.+.++..|..
T Consensus       432 ~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrF-r~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t  509 (565)
T KOG0472|consen  432 SQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRF-RMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT  509 (565)
T ss_pred             Hhhhcceeeecccchhh-hcchhhhhhhhhheeccccccc-ccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence            99999999999999887 6899999999999999999998 678999999999999999999998888888999999999


Q ss_pred             eeCCCCcCCCCCchhhhcCCCCCEEEccCCccc
Q 002679          711 LNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH  743 (893)
Q Consensus       711 L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~  743 (893)
                      |||.+|.+.. +|..+++|++|+.|++++|+|.
T Consensus       510 LDL~nNdlq~-IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  510 LDLQNNDLQQ-IPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             eccCCCchhh-CChhhccccceeEEEecCCccC
Confidence            9999999985 6889999999999999999998

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=8.6e-38  Score=326.09  Aligned_cols=368  Identities=24%  Similarity=0.255  Sum_probs=285.8

Q ss_pred             CCCCEEECCCCCCCccCCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCeecCCCccCCCCCCCCCCCCCCCCEEeC
Q 002679          107 PHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHL  186 (893)
Q Consensus       107 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  186 (893)
                      +.-+.||+++|.++.+-+..|.++++|+.+++.+|.++ .+|...+-..+|+.|+|.+|.++..-.+++..++.|+.|||
T Consensus        78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL  156 (873)
T ss_pred             cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence            35567999999988888888889999999999988888 78877666777899999998888777777888888888888


Q ss_pred             CCccCCCCCCcccCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCCCCCC
Q 002679          187 FKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGS  266 (893)
Q Consensus       187 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  266 (893)
                      +.|.++......|..-.++++|+|++|.|+......|..+.+|.+|.|+.|+++..-+..|.++++|+.|+|..|++.-.
T Consensus       157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence            88888877777788778888888888888877778888888888888888888866666777788888888888887633


Q ss_pred             CCCcCCCCCCCCEEEeecCCCCCCCCccccCCCCCCeeecCCCcCCCCCCCCCCCCCCCCEEEccCCCCccccCCCCCCC
Q 002679          267 IPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNL  346 (893)
Q Consensus       267 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  346 (893)
                      ---.|..+++|+.|.|..|.+.......|..|.++++|+|+.|+++..-..++.+++.|+.|++++|.|...-++..+.+
T Consensus       237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft  316 (873)
T KOG4194|consen  237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT  316 (873)
T ss_pred             hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence            24456778888888888888877777777788888888888888877666777788888888888888877777777777


Q ss_pred             CCCCeEEccCCcCCCCcccccCCCcccceEecccccCCCCCCccccccccCceeccCCccccccCCc---cccCCCccce
Q 002679          347 KSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPH---SLGNLTNLAI  423 (893)
Q Consensus       347 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~---~l~~l~~L~~  423 (893)
                      ++|+.|+|++|+++...+..|..+..|++|.|++|.+...-...|..+++|++|||++|.++..+.+   .|..++.|+.
T Consensus       317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk  396 (873)
T KOG4194|consen  317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK  396 (873)
T ss_pred             ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence            8888888888888877777777777888888888877766666677777888888888877655432   3566777777


Q ss_pred             eecccccccccCChhhhcccccccccCCCCCcCCCccccCCCCCccceEEccc
Q 002679          424 LYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYD  476 (893)
Q Consensus       424 L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~  476 (893)
                      |.+.+|++......+|.+++.|++|||.+|.+..+.+.+|..+ .|+.|.+..
T Consensus       397 L~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  397 LRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             eeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            7777777775555677777777777777777777777777666 666665543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2e-40  Score=331.45  Aligned_cols=489  Identities=32%  Similarity=0.442  Sum_probs=320.0

Q ss_pred             CCCCCEEEccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCCCCCCCCCcCCCCCCCCEEE
Q 002679          202 LSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLY  281 (893)
Q Consensus       202 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  281 (893)
                      -..|+.+.+++|.+. .+.+.+.++..|.+|++++|.+. ..|++++.+..++.++.++|++. .+|..++.+.+|+.++
T Consensus        44 qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~  120 (565)
T KOG0472|consen   44 QVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD  120 (565)
T ss_pred             hcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence            344555555555555 22334566666777777777766 56666777777777777777776 5676777777777777


Q ss_pred             eecCCCCCCCCccccCCCCCCeeecCCCcCCCCCCCCCCCCCCCCEEEccCCCCccccCCCCCCCCCCCeEEccCCcCCC
Q 002679          282 LRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSS  361 (893)
Q Consensus       282 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~  361 (893)
                      +++|.+. ..|+.++.+..|+.++..+|+++ ..|.++..+.+|..+++.+|++....|..+. ++.|++||...|.++ 
T Consensus       121 ~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-  196 (565)
T KOG0472|consen  121 CSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-  196 (565)
T ss_pred             cccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-
Confidence            7777776 45556777777777777777776 5667777777777777777777644443333 777777777777665 


Q ss_pred             CcccccCCCcccceEecccccCCCCCCccccccccCceeccCCccccccCCccc-cCCCccceeecccccccccCChhhh
Q 002679          362 SIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLGSIPREIG  440 (893)
Q Consensus       362 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~  440 (893)
                      .+|..++.+.+|+.|++..|++. ..| .|.+|..|++++++.|.+. .+|... .+++++..||+.+|++. ..|..+.
T Consensus       197 tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~c  272 (565)
T KOG0472|consen  197 TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEIC  272 (565)
T ss_pred             cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHH
Confidence            46667777778888888888776 445 6778888888888888777 444443 47778888888888877 6677777


Q ss_pred             cccccccccCCCCCcCCCccccCCCCCccceEEcccCcCcccCCccccCCC---CCCEEec--CCCcCcCCCCCcCCCCC
Q 002679          441 NLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLV---KLTMLTL--SDNQLQGSIPNLRNLTN  515 (893)
Q Consensus       441 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L~L--s~n~l~~~~~~l~~~~~  515 (893)
                      -+.+|+.||+++|.+++ .|..++++ +|+.|.+.+|.+..+-.+ +-+..   -|++|.=  .+-.++..     .-..
T Consensus       273 lLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~-ii~~gT~~vLKyLrs~~~~dglS~s-----e~~~  344 (565)
T KOG0472|consen  273 LLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRRE-IISKGTQEVLKYLRSKIKDDGLSQS-----EGGT  344 (565)
T ss_pred             HhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHH-HHcccHHHHHHHHHHhhccCCCCCC-----cccc
Confidence            77788888888887775 45667777 777777777766532111 11110   0111100  00000000     0000


Q ss_pred             CCEEEcCCCcCCCCCCccccCCCCCcEEeccCCcccccCCcCcCCC--CCccEEEccCCccCCCCCCCcCCCCCccE-EE
Q 002679          516 LIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKC--PNLGTFDVSVNNIIGSLPPEIGDSSQLHV-ID  592 (893)
Q Consensus       516 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~--~~L~~L~ls~n~l~~~~p~~l~~l~~L~~-L~  592 (893)
                      -..-+    ...+..| ......+.+.|++++-+++......|...  .-....+++.|++. .+|..+..++.+.+ ++
T Consensus       345 e~~~t----~~~~~~~-~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~  418 (565)
T KOG0472|consen  345 ETAMT----LPSESFP-DIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLV  418 (565)
T ss_pred             cccCC----CCCCccc-chhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHH
Confidence            00000    0000000 01122344555555555543322222211  22556666777665 45655555554443 34


Q ss_pred             ccCCcccccCCccccCcccceeEEeccccccCCCcccccCCcccceecCCCCcccccccccccCCCCCCeeecccCcCCc
Q 002679          593 LSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQ  672 (893)
Q Consensus       593 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  672 (893)
                      +++|.+ +.+|..++.+++|+.|++++|.+. .+|..++.+..|+.||+|.|++. .+|.++..+..++.+-.++|++..
T Consensus       419 lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~  495 (565)
T KOG0472|consen  419 LSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGS  495 (565)
T ss_pred             hhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccc
Confidence            444444 477777888888888888877664 56777888888999999999887 788888888889998888899888


Q ss_pred             ccchhhhhccCccccccccccCCCcccccccCCcccceeeCCCCcCC
Q 002679          673 EIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLS  719 (893)
Q Consensus       673 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  719 (893)
                      ..|..+.++..|.+|||.+|.+ ..||..++++++|++|+|++|++.
T Consensus       496 vd~~~l~nm~nL~tLDL~nNdl-q~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  496 VDPSGLKNMRNLTTLDLQNNDL-QQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cChHHhhhhhhcceeccCCCch-hhCChhhccccceeEEEecCCccC
Confidence            8888899999999999999998 678888999999999999999998

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-35  Score=326.72  Aligned_cols=507  Identities=30%  Similarity=0.357  Sum_probs=294.7

Q ss_pred             EeCCCCCCCCCCCccccCCCCCCeecCCCccCCCCCCCCCCCCCCCCEEeCCCccCCCCCCcccCCCCCCCEEEccCCCC
Q 002679          136 LDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFL  215 (893)
Q Consensus       136 L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l  215 (893)
                      +|++..++. .||..+-.-..++.|+++.|.+....-+.+.+..+|+.||+++|++.                       
T Consensus         3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-----------------------   58 (1081)
T KOG0618|consen    3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-----------------------   58 (1081)
T ss_pred             cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-----------------------
Confidence            566666666 66766655555777777777665322233334444555555555543                       


Q ss_pred             CCCCCCCCCCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCCCCCCCCCcCCCCCCCCEEEeecCCCCCCCCccc
Q 002679          216 KGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEI  295 (893)
Q Consensus       216 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l  295 (893)
                        ..|..+..+.+|+.|+++.|.+. ..|....++.+|+++.|.+|.+. ..|..+..+.+|++|+++.|++. .+|..+
T Consensus        59 --~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i  133 (1081)
T KOG0618|consen   59 --SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVI  133 (1081)
T ss_pred             --cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhH
Confidence              33344444555555555555544 34455555555556666555554 45555555666666666666554 455555


Q ss_pred             cCCCCCCeeecCCCcCCCCCCCCCCCCCCCCEEEccCCCCccccCCCCCCCCCCCeEEccCCcCCCCcccccCCCcccce
Q 002679          296 GNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAA  375 (893)
Q Consensus       296 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~  375 (893)
                      ..++.++.++.++|.....    ++... .+.+++..|.+.+.++..+..+..  .|++.+|.+. .  ..+.++++|+.
T Consensus       134 ~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~  203 (1081)
T KOG0618|consen  134 EVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEV  203 (1081)
T ss_pred             HhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-h--hhhhhccchhh
Confidence            5566666666666521111    11111 555556666665555555555544  5666666655 1  23455556666


Q ss_pred             EecccccCCCCCCccccccccCceeccCCccccccCCccccCCCccceeecccccccccCChhhhcccccccccCCCCCc
Q 002679          376 FYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKL  455 (893)
Q Consensus       376 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l  455 (893)
                      +....|++....    -.-++|+.|+.++|.++...+.  ..-.+|+.++++.|+++ .+|+++..+.+|+.++..+|++
T Consensus       204 l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l  276 (1081)
T KOG0618|consen  204 LHCERNQLSELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRL  276 (1081)
T ss_pred             hhhhhcccceEE----ecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhH
Confidence            666665554221    1124555666666655522111  11234555555555555 3345555555555555555555


Q ss_pred             CCCccccCCCCCccceEEcccCcCcccCCccccCCCCCCEEecCCCcCcCCCCCcCCCCCCCEEEcCCCcCCCCCCcccc
Q 002679          456 SNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFG  535 (893)
Q Consensus       456 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~  535 (893)
                      +                         .+|..+...++|+.|.+.+|.+....|.....++|++|++..|.+....+..+.
T Consensus       277 ~-------------------------~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~  331 (1081)
T KOG0618|consen  277 V-------------------------ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLA  331 (1081)
T ss_pred             H-------------------------hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHh
Confidence            2                         223333333344444444444443333444555566666666555443332222


Q ss_pred             CCCC-CcEEeccCCcccccCCcCcCCCCCccEEEccCCccCCCCCCCcCCCCCccEEEccCCcccccCCccccCccccee
Q 002679          536 IHPK-LTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIK  614 (893)
Q Consensus       536 ~~~~-L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  614 (893)
                      .... +..+..+.|++....                        ...-...+.|+.|.+.+|.+++..-..+.+...|+.
T Consensus       332 v~~~~l~~ln~s~n~l~~lp------------------------~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKV  387 (1081)
T KOG0618|consen  332 VLNASLNTLNVSSNKLSTLP------------------------SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKV  387 (1081)
T ss_pred             hhhHHHHHHhhhhccccccc------------------------cccchhhHHHHHHHHhcCcccccchhhhccccceee
Confidence            2222 444444444443211                        111122345666777777776665556677777777


Q ss_pred             EEeccccccCCCcccccCCcccceecCCCCcccccccccccCCCCCCeeecccCcCCcccchhhhhccCccccccccccC
Q 002679          615 LILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFL  694 (893)
Q Consensus       615 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  694 (893)
                      |+|++|++.......+.++..|++|+||+|+++ .+|.++.++..|++|...+|++. ..| ++..++.|+.+|+|.|.+
T Consensus       388 LhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L  464 (1081)
T KOG0618|consen  388 LHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNL  464 (1081)
T ss_pred             eeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchh
Confidence            777777777666677788888999999999988 57888999999999999988874 344 888899999999999998


Q ss_pred             CCcccccccCCcccceeeCCCCcCCCCCchhhhcCCCCCEEEccCC
Q 002679          695 GKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYN  740 (893)
Q Consensus       695 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N  740 (893)
                      +...-..-..-+.|++|||++|.-....-..|..+.++..+++.-|
T Consensus       465 ~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  465 SEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             hhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            7654333223389999999999866666677888888888888877

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=3.8e-35  Score=323.00  Aligned_cols=322  Identities=34%  Similarity=0.382  Sum_probs=183.0

Q ss_pred             EECCCCCCCccCCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCeecCCCccCCCCCCCCCCCCCCCCEEeCCCccC
Q 002679          112 LDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQL  191 (893)
Q Consensus       112 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  191 (893)
                      +|++...+. .||..+-.-..++.|+++.|.+-...-+.+.+..+|+.||+++|.+. ..|..+..+..|+.|.++.|.+
T Consensus         3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i   80 (1081)
T KOG0618|consen    3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI   80 (1081)
T ss_pred             cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence            566666664 36666666667999999999876333345566777999999999887 8899999999999999999887


Q ss_pred             CCCCCcccCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCCCCCCCCCcC
Q 002679          192 SGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFL  271 (893)
Q Consensus       192 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l  271 (893)
                      .. .|.+..++.+|+++.|..|.+. ..|..+..+.+|+.|++++|.+. .+|..+..++.++.+..++|.....    +
T Consensus        81 ~~-vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----l  153 (1081)
T KOG0618|consen   81 RS-VPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----L  153 (1081)
T ss_pred             hh-Cchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----h
Confidence            63 3466666677777777666655 45556666666666666666654 4555555566666666666521111    1


Q ss_pred             CCCCCCCEEEeecCCCCCCCCccccCCCCCCeeecCCCcCCCCCCCCCCCCCCCCEEEccCCCCccccCCCCCCCCCCCe
Q 002679          272 GNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSG  351 (893)
Q Consensus       272 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  351 (893)
                      +... ++.+++..|.+.+.++..+..++.  .|+|.+|.+.   -..+..+++|+.+....|.+....    -.-++|+.
T Consensus       154 g~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~  223 (1081)
T KOG0618|consen  154 GQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE----ISGPSLTA  223 (1081)
T ss_pred             cccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE----ecCcchhe
Confidence            1111 555555555555555555554444  4566555553   123344555555555555443211    11244555


Q ss_pred             EEccCCcCCCCcccccCCCcccceEecccccCCCCCCccccccccCceeccCCccccccCCccccCCCccceeecccccc
Q 002679          352 LELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTL  431 (893)
Q Consensus       352 L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l  431 (893)
                      |+.++|.++...+..  .-.+|+++++++|+++ .+|++++.|.+|+.++..+|+++ .+|..+....+|+.|.+..|.+
T Consensus       224 L~a~~n~l~~~~~~p--~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel  299 (1081)
T KOG0618|consen  224 LYADHNPLTTLDVHP--VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNEL  299 (1081)
T ss_pred             eeeccCcceeecccc--ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhh
Confidence            555555554222111  1134455555555554 23355555555555555555553 3344444444455555555544


Q ss_pred             cccCChhhhcccccccccCCCCCcCC
Q 002679          432 LGSIPREIGNLKSLFELQLGDNKLSN  457 (893)
Q Consensus       432 ~~~~~~~~~~~~~L~~L~Ls~n~l~~  457 (893)
                      . -+|....+.+.|++|+|..|++..
T Consensus       300 ~-yip~~le~~~sL~tLdL~~N~L~~  324 (1081)
T KOG0618|consen  300 E-YIPPFLEGLKSLRTLDLQSNNLPS  324 (1081)
T ss_pred             h-hCCCcccccceeeeeeehhccccc
Confidence            4 333344444445555555444443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=4e-33  Score=292.74  Aligned_cols=363  Identities=27%  Similarity=0.424  Sum_probs=179.0

Q ss_pred             CCCCCEEECCCCCCCc-cCCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCeecCCCccCCCCCCCCCCCCCCCCEE
Q 002679          106 FPHLAYLDLQVNQIFG-IIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEAL  184 (893)
Q Consensus       106 l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  184 (893)
                      ++.+|-.|+++|.|+| ..|.....+++++.|.|...++. .+|+.++.|.+|++|.+++|++. .+-..++.|+.|+.+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv   83 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV   83 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence            3344445555555552 35555555566666666555554 55555666666666666666554 333445555555555


Q ss_pred             eCCCccCC-CCCCcccCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCCC
Q 002679          185 HLFKNQLS-GPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKL  263 (893)
Q Consensus       185 ~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  263 (893)
                      ++..|++. ..+|..+..+..|+.|||++|++. ..|..+..-+++-+|+|++|+|..+....+-+++.|-.||||+|++
T Consensus        84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL  162 (1255)
T KOG0444|consen   84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL  162 (1255)
T ss_pred             hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence            55555542 234555555555555555555554 4445555555555555555555522222334555555555555555


Q ss_pred             CCCCCCcCCCCCCCCEEEeecCCCCCCCCccccCCCCCCeeecCCCcCC-CCCCCCCCCCCCCCEEEccCCCCccccCCC
Q 002679          264 CGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLN-GSIPLSLGNLTNLDTLYLYTNSLSGSIPSE  342 (893)
Q Consensus       264 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~  342 (893)
                      . .+|..+..+..|++|+|++|.+.-..-..+..+++|++|.+++.+-+ ..+|.++..+.+|..++++.|.+. ..|+.
T Consensus       163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec  240 (1255)
T KOG0444|consen  163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC  240 (1255)
T ss_pred             h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence            4 34444455555555555555444322222333445555555544322 234555555555555555555554 44555


Q ss_pred             CCCCCCCCeEEccCCcCCCCcccccCCCcccceEecccccCCCCCCccccccccCceeccCCccccc-cCCccccCCCcc
Q 002679          343 IGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSG-SIPHSLGNLTNL  421 (893)
Q Consensus       343 l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L  421 (893)
                      +.++++|+.|++|+|+++.. ....+...+|++|+++.|+++ .+|+++..+++|+.|.+.+|+++- -+|..++.+.+|
T Consensus       241 ly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L  318 (1255)
T KOG0444|consen  241 LYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL  318 (1255)
T ss_pred             HhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence            55555555555555555421 122233344455555555554 444445555555555555544431 234444444444


Q ss_pred             ceeecccccccccCChhhhcccccccccCCCCCcCCCccccCCCCCccceEEcccC
Q 002679          422 AILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDN  477 (893)
Q Consensus       422 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n  477 (893)
                      +.+..++|.+. ..|+.+..|..|+.|.|+.|++.. .|.++.-++.|+.|++..|
T Consensus       319 evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreN  372 (1255)
T KOG0444|consen  319 EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLREN  372 (1255)
T ss_pred             HHHHhhccccc-cCchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCC
Confidence            44444444443 444444444444444444444432 3333444444444444444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=3.4e-33  Score=293.28  Aligned_cols=383  Identities=26%  Similarity=0.385  Sum_probs=331.0

Q ss_pred             CCEEEEEcCCCCCccc-cCCccCCCCCCCCEEECCCCCCCccCCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCee
Q 002679           82 GRVNSINLTNVGLKGT-LHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFL  160 (893)
Q Consensus        82 ~~v~~l~l~~~~l~g~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L  160 (893)
                      ..|+++|++++.++|. +| .+...++.++.|.|...++.. +|+.++.|.+|++|.+++|++. .+-..++.|+.||.+
T Consensus         7 pFVrGvDfsgNDFsg~~FP-~~v~qMt~~~WLkLnrt~L~~-vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv   83 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFP-HDVEQMTQMTWLKLNRTKLEQ-VPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV   83 (1255)
T ss_pred             ceeecccccCCcCCCCcCc-hhHHHhhheeEEEechhhhhh-ChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence            4689999999999964 55 788899999999999988854 8999999999999999999987 556778899999999


Q ss_pred             cCCCccCC-CCCCCCCCCCCCCCEEeCCCccCCCCCCcccCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCEEEccCCcC
Q 002679          161 YLSANQFS-GRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSL  239 (893)
Q Consensus       161 ~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  239 (893)
                      ++.+|++. .-+|..+.++..|..|||++|++. ..|..+..-+++-.|+|++|+|.......+.+++.|-.|||++|++
T Consensus        84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL  162 (1255)
T KOG0444|consen   84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL  162 (1255)
T ss_pred             hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence            99999985 468899999999999999999997 5688888999999999999999977667788999999999999999


Q ss_pred             CCCCCccccCCCCCCEEEccCCCCCCCCCCcCCCCCCCCEEEeecCCCC-CCCCccccCCCCCCeeecCCCcCCCCCCCC
Q 002679          240 SGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFS-SSIPSEIGNLKSLSILELGENRLNGSIPLS  318 (893)
Q Consensus       240 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~  318 (893)
                      . .+|+.+..+..|+.|+|++|.+...--..+..+++|++|.+++.+-+ ..+|.++..+.+|..+|+|.|.+. ..|+.
T Consensus       163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec  240 (1255)
T KOG0444|consen  163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC  240 (1255)
T ss_pred             h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence            8 67888999999999999999886433334556788899999987643 468888999999999999999998 78999


Q ss_pred             CCCCCCCCEEEccCCCCccccCCCCCCCCCCCeEEccCCcCCCCcccccCCCcccceEecccccCCC-CCCccccccccC
Q 002679          319 LGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSG-SIPSEIGNLKSL  397 (893)
Q Consensus       319 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L  397 (893)
                      +.++++|+.|+|++|.++ .+....+...+|++|++|.|+++ ..|..+..+++|+.|++.+|+++- -+|..++.+.+|
T Consensus       241 ly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L  318 (1255)
T KOG0444|consen  241 LYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL  318 (1255)
T ss_pred             HhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence            999999999999999998 44445667789999999999998 578999999999999999998863 579999999999


Q ss_pred             ceeccCCccccccCCccccCCCccceeecccccccccCChhhhcccccccccCCCCCcCCCccccCCCCCccceEEc
Q 002679          398 SNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLAL  474 (893)
Q Consensus       398 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  474 (893)
                      +.+..++|.+. ..|+.++.|..|+.|.|+.|.+. .+|+.+.-++.|+.||+..|.-.-..|..-..-+.++.-++
T Consensus       319 evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNI  393 (1255)
T KOG0444|consen  319 EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNI  393 (1255)
T ss_pred             HHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeec
Confidence            99999999997 88999999999999999999998 78999999999999999999654444433222244444333

>PLN03210 Resistant to P

Probab=99.92  E-value=2.5e-23  Score=258.87  Aligned_cols=364  Identities=22%  Similarity=0.259  Sum_probs=214.2

Q ss_pred             CCEEEEEcCCCCCc-cccCCccCCCCCCCCEEECCCCCC------CccCCccccCCC-CCCEEeCCCCCCCCCCCccccC
Q 002679           82 GRVNSINLTNVGLK-GTLHDFSFSSFPHLAYLDLQVNQI------FGIIPPQIGNIS-KLKYLDLSSNSFSGTIPPQIGN  153 (893)
Q Consensus        82 ~~v~~l~l~~~~l~-g~~~~~~~~~l~~L~~L~L~~n~l------~~~~~~~~~~l~-~L~~L~Ls~n~~~~~~p~~l~~  153 (893)
                      .+|.++.+.-..+. -.++..+|.++++|+.|.+..+.+      ...+|..|..++ +|+.|++.++.+. .+|..+ .
T Consensus       532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~  609 (1153)
T PLN03210        532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-R  609 (1153)
T ss_pred             ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-C
Confidence            45666655433332 123445788889999988865532      334666666664 5888888888776 677776 4


Q ss_pred             CCCCCeecCCCccCCCCCCCCCCCCCCCCEEeCCCccCCCCCCcccCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCEEE
Q 002679          154 LSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILY  233 (893)
Q Consensus       154 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  233 (893)
                      ..+|++|++++|.+. .+|..+..+++|+.|+++++.....+|. +..+++|++|++++|.....+|..++++++|+.|+
T Consensus       610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~  687 (1153)
T PLN03210        610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD  687 (1153)
T ss_pred             ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence            678888888888876 5777778888888888887765556663 67778888888888776667777778888888888


Q ss_pred             ccCCcCCCCCCccccCCCCCCEEEccCCCCCCCCCCcCCCCCCCCEEEeecCCCCCCCCccccCCCCCCeeecCCCcCCC
Q 002679          234 LHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNG  313 (893)
Q Consensus       234 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  313 (893)
                      +++|..-..+|..+ ++++|+.|++++|...+.+|..   ..+|++|++++|.+. .+|..+ .+++|+.|++.++....
T Consensus       688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~  761 (1153)
T PLN03210        688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEK  761 (1153)
T ss_pred             CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhh
Confidence            88776555666554 5777788888777655455532   346777777777765 445443 45666666666533210


Q ss_pred             CCCCCCCCCCCCCEEEccCCCCccccCCCCCCCCCCCeEEccCCcCCCCcccccCCCcccceEecccccCCCCCCccccc
Q 002679          314 SIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGN  393 (893)
Q Consensus       314 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~  393 (893)
                       +...+.                ...+......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ +
T Consensus       762 -l~~~~~----------------~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~  823 (1153)
T PLN03210        762 -LWERVQ----------------PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N  823 (1153)
T ss_pred             -cccccc----------------ccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C
Confidence             000000                0001111122344444444444444444444444444444444443333344333 3


Q ss_pred             cccCceeccCCccccccCCccccCCCccceeecccccccccCChhhhcccccccccCCCCCcCCCccccCCCCCccceEE
Q 002679          394 LKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLA  473 (893)
Q Consensus       394 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  473 (893)
                      +++|+.|++++|.....+|..   .++|+.|++++|.++ .+|..+..+++|+.|++++|+-...++..+..+++|+.++
T Consensus       824 L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~  899 (1153)
T PLN03210        824 LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD  899 (1153)
T ss_pred             ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeee
Confidence            455555555554333333322   234555555555554 3455555556666666655433333444555556666666


Q ss_pred             cccC
Q 002679          474 LYDN  477 (893)
Q Consensus       474 L~~n  477 (893)
                      +++|
T Consensus       900 l~~C  903 (1153)
T PLN03210        900 FSDC  903 (1153)
T ss_pred             cCCC
Confidence            5554

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.91  E-value=1.5e-22  Score=251.97  Aligned_cols=342  Identities=21%  Similarity=0.276  Sum_probs=218.8

Q ss_pred             CccccCCCCCCEEeCCCCC------CCCCCCccccCCC-CCCeecCCCccCCCCCCCCCCCCCCCCEEeCCCccCCCCCC
Q 002679          124 PPQIGNISKLKYLDLSSNS------FSGTIPPQIGNLS-MLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIP  196 (893)
Q Consensus       124 ~~~~~~l~~L~~L~Ls~n~------~~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  196 (893)
                      +.+|.++++|++|.+..+.      +...+|..+..++ +|+.|++.++.+. .+|..+ ...+|++|++.+|++.. ++
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~-L~  627 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEK-LW  627 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccc-cc
Confidence            3456777777777775543      2234555555543 4777777766664 556555 35666666666666542 34


Q ss_pred             cccCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCCCCCCCCCcCCCCCC
Q 002679          197 HEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTN  276 (893)
Q Consensus       197 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  276 (893)
                      ..+..+++|++|+++++.....+|. ++.+++|++|++++|.....+|..+.++++|+.|++++|..-+.+|..+ ++++
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s  705 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS  705 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence            4555566666666665544334442 5555566666665555444555555555555555555544333444433 4455


Q ss_pred             CCEEEeecCCCCCCCCccccCCCCCCeeecCCCcCCCCCCCCCCCCCCCCEEEccCCCCccccCCCCCCCCCCCeEEccC
Q 002679          277 LDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELAD  356 (893)
Q Consensus       277 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~  356 (893)
                      |+.|++++|...+.+|.                        .   ..+|++|++++|.+. .+|..+ .+++|+.|++.+
T Consensus       706 L~~L~Lsgc~~L~~~p~------------------------~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~  756 (1153)
T PLN03210        706 LYRLNLSGCSRLKSFPD------------------------I---STNISWLDLDETAIE-EFPSNL-RLENLDELILCE  756 (1153)
T ss_pred             CCEEeCCCCCCcccccc------------------------c---cCCcCeeecCCCccc-cccccc-cccccccccccc
Confidence            55555555543333332                        1   234444555554443 233332 344555555544


Q ss_pred             CcC-------CCCcccccCCCcccceEecccccCCCCCCccccccccCceeccCCccccccCCccccCCCccceeecccc
Q 002679          357 NEL-------SSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSN  429 (893)
Q Consensus       357 n~l-------~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n  429 (893)
                      +..       ....+......++|+.|++++|...+.+|.+++++++|+.|++++|...+.+|..+ ++++|+.|++++|
T Consensus       757 ~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c  835 (1153)
T PLN03210        757 MKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGC  835 (1153)
T ss_pred             cchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCC
Confidence            221       11122223345789999999998888899999999999999999987666777765 7899999999998


Q ss_pred             cccccCChhhhcccccccccCCCCCcCCCccccCCCCCccceEEcccCcCcccCCccccCCCCCCEEecCCCcCc
Q 002679          430 TLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ  504 (893)
Q Consensus       430 ~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  504 (893)
                      .....+|..   ..+|+.|++++|.++. +|.++..+++|+.|++++|.--..+|..+..+++|+.+++++|.-.
T Consensus       836 ~~L~~~p~~---~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L  906 (1153)
T PLN03210        836 SRLRTFPDI---STNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL  906 (1153)
T ss_pred             Ccccccccc---ccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence            776566543   3679999999999974 6778999999999999997655567778889999999999999744

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=2.2e-24  Score=216.76  Aligned_cols=276  Identities=21%  Similarity=0.252  Sum_probs=170.3

Q ss_pred             CCCEEEeecCCCCCCCCccccCCCCCCeeecCCCcCCCCCCCCCCCCCCCCEEEccC-CCCccccCCCCCCCCCCCeEEc
Q 002679          276 NLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYT-NSLSGSIPSEIGNLKSLSGLEL  354 (893)
Q Consensus       276 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l  354 (893)
                      .-..++|..|+|+.+.|.+|+.+++|+.|||++|.++.+-|.+|..+++|..|-+.+ |+|+......|+++..|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            455667777777766666777777777777777777766677777777766665554 6666555556777777777777


Q ss_pred             cCCcCCCCcccccCCCcccceEecccccCCCCCCccccccccCceeccCCcccc------------ccCCccccCCCccc
Q 002679          355 ADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLS------------GSIPHSLGNLTNLA  422 (893)
Q Consensus       355 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~------------~~~~~~l~~l~~L~  422 (893)
                      .-|++.......|..++++..|.+.+|.+..+--..|..+..++.+.+..|.+.            ...|..++......
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~  227 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS  227 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence            777777666677777777777777777776444446777777777777766532            11222233333333


Q ss_pred             eeecccccccccCChhhhcc-cccccccCCCCCcCC-CccccCCCCCccceEEcccCcCcccCCccccCCCCCCEEecCC
Q 002679          423 ILYLHSNTLLGSIPREIGNL-KSLFELQLGDNKLSN-SISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSD  500 (893)
Q Consensus       423 ~L~L~~n~l~~~~~~~~~~~-~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  500 (893)
                      -..+.+.++....+..+... ..+..--.+.+...+ -....|..+++|+.|++++|+++++.+.+|.+...+++|.|..
T Consensus       228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~  307 (498)
T KOG4237|consen  228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR  307 (498)
T ss_pred             hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence            33333333332222222211 111111111222222 2233466777777777777777777777777777777777777


Q ss_pred             CcCcCCCC-CcCCCCCCCEEEcCCCcCCCCCCccccCCCCCcEEeccCCccc
Q 002679          501 NQLQGSIP-NLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFY  551 (893)
Q Consensus       501 n~l~~~~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~  551 (893)
                      |++...-. .|.++..|+.|++.+|+|+...|.+|.....|..|.+-.|.+.
T Consensus       308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            77754332 4667777777777777777777777777777777777766653

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.86  E-value=4.5e-24  Score=214.52  Aligned_cols=426  Identities=25%  Similarity=0.251  Sum_probs=233.5

Q ss_pred             CCCEEEccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccC-CCCCCCCCCcCCCCCCCCEEEe
Q 002679          204 SLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGN-NKLCGSIPLFLGNLTNLDTLYL  282 (893)
Q Consensus       204 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L  282 (893)
                      .-.+++|..|+|+...+.+|+.+++|+.|||++|.|+.+-|++|.++++|..|-+.+ |+|+......|+++..|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            445677777777777777777777777777777777777777777777666655444 6676544456667777777777


Q ss_pred             ecCCCCCCCCccccCCCCCCeeecCCCcCCCCCCCCCCCCCCCCEEEccCCCCccccCCCCCCCCCCCeEEccCCcCCCC
Q 002679          283 RNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSS  362 (893)
Q Consensus       283 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~  362 (893)
                      .-|++.-...+.|..+++|..|.+.+|.+...--..|..+..++.+.+..|.+-.     ..+++.+.....       .
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~a-------~  215 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDLA-------M  215 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhhHHh-------h
Confidence            7777666666666777777777777776663333366666666666666655321     122222211100       1


Q ss_pred             cccccCCCcccceEecccccCCCCCCcccccc-ccCceeccCCccccccCC-ccccCCCccceeecccccccccCChhhh
Q 002679          363 IPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNL-KSLSNLDLSENKLSGSIP-HSLGNLTNLAILYLHSNTLLGSIPREIG  440 (893)
Q Consensus       363 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~  440 (893)
                      .|..++...-..-..+.+.++...-+..|... ..+..=-.+.+...+..| ..|..+++|+.|++++|++++.-+.+|.
T Consensus       216 ~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe  295 (498)
T KOG4237|consen  216 NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE  295 (498)
T ss_pred             chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence            11222222222233333444433322222211 111111112222222333 3467778888888888888877777788


Q ss_pred             cccccccccCCCCCcCCCccccCCCCCccceEEcccCcCcccCCccccCCCCCCEEecCCCcCcCCCC--CcCCCCCCCE
Q 002679          441 NLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP--NLRNLTNLIR  518 (893)
Q Consensus       441 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~l~~~~~L~~  518 (893)
                      +...+++|.|..|++.......|.++..|+.|+|.+|+++...|..|..+.+|.+|++-.|++.-.-.  +++..     
T Consensus       296 ~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~W-----  370 (498)
T KOG4237|consen  296 GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEW-----  370 (498)
T ss_pred             chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHH-----
Confidence            88888888888888777777777788888888888888888888888888888888877776642100  11000     


Q ss_pred             EEcCCCcCCCCCCccccCCCCCcEEeccCCcccccCCcCcCCCCCccEEEccCCccCCCCCCCcCCCCCccEEEccCCcc
Q 002679          519 LRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHI  598 (893)
Q Consensus       519 L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  598 (893)
                        +......+..+  .+....++.+++++..+...-      |..=++..   +.-++.-|   ..++-+.+..=-.|+.
T Consensus       371 --lr~~~~~~~~~--Cq~p~~~~~~~~~dv~~~~~~------c~~~ee~~---~~~s~~cP---~~c~c~~tVvRcSnk~  434 (498)
T KOG4237|consen  371 --LRKKSVVGNPR--CQSPGFVRQIPISDVAFGDFR------CGGPEELG---CLTSSPCP---PPCTCLDTVVRCSNKL  434 (498)
T ss_pred             --HhhCCCCCCCC--CCCCchhccccchhccccccc------cCCccccC---CCCCCCCC---CCcchhhhhHhhcccc
Confidence              01111111111  112223444444444332110      00000000   00000111   1122222211111222


Q ss_pred             cccCCccccCcccceeEEeccccccCCCcccccCCcccceecCCCCcccccccccccCCCCCCeeecccC
Q 002679          599 IGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTN  668 (893)
Q Consensus       599 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N  668 (893)
                      ...+|..+.  ....++++.+|.++.+..+   .+.+| .+|+++|+++..-...|.++++|.+|-||+|
T Consensus       435 lk~lp~~iP--~d~telyl~gn~~~~vp~~---~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  435 LKLLPRGIP--VDVTELYLDGNAITSVPDE---LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hhhcCCCCC--chhHHHhcccchhcccCHH---HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            223443332  2345677777777654433   56667 7888888887776778888888888888876

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.83  E-value=4.3e-20  Score=212.49  Aligned_cols=266  Identities=26%  Similarity=0.336  Sum_probs=143.8

Q ss_pred             cCceeccCCccccccCCccccCCCccceeecccccccccCChhhhcccccccccCCCCCcCCCccccCCCCCccceEEcc
Q 002679          396 SLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALY  475 (893)
Q Consensus       396 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  475 (893)
                      .-..|+++++.++ .+|..+.  ++|+.|++.+|+++. +|.   ..++|++|++++|+++.. |.   ..++|+.|+++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~Ls  270 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSIF  270 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcc-cC---cccccceeecc
Confidence            4557788888887 5666554  367888888887773 443   245677777777776643 22   13456666666


Q ss_pred             cCcCcccCCccccCCCCCCEEecCCCcCcCCCCCcCCCCCCCEEEcCCCcCCCCCCccccCCCCCcEEeccCCcccccCC
Q 002679          476 DNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQIS  555 (893)
Q Consensus       476 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~  555 (893)
                      +|.++. +|.   ...+|+.|++++|+++.. |.  ..++|+.|++++|++++. |.   ...+|+              
T Consensus       271 ~N~L~~-Lp~---lp~~L~~L~Ls~N~Lt~L-P~--~p~~L~~LdLS~N~L~~L-p~---lp~~L~--------------  325 (788)
T PRK15387        271 SNPLTH-LPA---LPSGLCKLWIFGNQLTSL-PV--LPPGLQELSVSDNQLASL-PA---LPSELC--------------  325 (788)
T ss_pred             CCchhh-hhh---chhhcCEEECcCCccccc-cc--cccccceeECCCCccccC-CC---Cccccc--------------
Confidence            666553 222   123455556666555532 21  123455555555554432 11   112344              


Q ss_pred             cCcCCCCCccEEEccCCccCCCCCCCcCCCCCccEEEccCCcccccCCccccCcccceeEEeccccccCCCcccccCCcc
Q 002679          556 SDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQ  635 (893)
Q Consensus       556 ~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  635 (893)
                                .|++++|.+++ +|..   ..+|+.|++++|++++ +|..   .++|+.|++++|++.+ +|..   ..+
T Consensus       326 ----------~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~  383 (788)
T PRK15387        326 ----------KLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSG  383 (788)
T ss_pred             ----------ccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccc
Confidence                      44444444432 2221   1245555555555542 3321   2345555555555553 3321   245


Q ss_pred             cceecCCCCcccccccccccCCCCCCeeecccCcCCcccchhhhhccCccccccccccCCCcccccccCCcccceeeCCC
Q 002679          636 LEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSH  715 (893)
Q Consensus       636 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  715 (893)
                      |+.|++++|++++ +|..   .++|+.|++++|++++ +|..   ..+|+.|++++|+++ .+|..+.++++|+.|+|++
T Consensus       384 L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~  454 (788)
T PRK15387        384 LKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG  454 (788)
T ss_pred             cceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCC
Confidence            6666666666663 3432   2456666777776654 4432   234566777777764 4566666777777777777


Q ss_pred             CcCCCCCchhhhc
Q 002679          716 NNLSDFIPRCFEE  728 (893)
Q Consensus       716 N~l~~~~p~~l~~  728 (893)
                      |+|++.+|..+..
T Consensus       455 N~Ls~~~~~~L~~  467 (788)
T PRK15387        455 NPLSERTLQALRE  467 (788)
T ss_pred             CCCCchHHHHHHH
Confidence            7777766666533

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.82  E-value=1.5e-19  Score=207.95  Aligned_cols=265  Identities=25%  Similarity=0.406  Sum_probs=150.8

Q ss_pred             CCEEeCCCCCCCCCCCccccCCCCCCeecCCCccCCCCCCCCCCCCCCCCEEeCCCccCCCCCCcccCCCCCCCEEEccC
Q 002679          133 LKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTS  212 (893)
Q Consensus       133 L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  212 (893)
                      -..|+|+.+.++ .+|..+.  .+|+.|++++|+++ .+|..   .++|++|++++|+++.. |..   .++|++|++++
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~LtsL-P~l---p~sL~~L~Ls~  271 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLTSL-PVL---PPGLLELSIFS  271 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccCcc-cCc---ccccceeeccC
Confidence            344444444444 3444332  24445555554444 23321   24455555555555432 221   23455555555


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCCCCCCCCCcCCCCCCCCEEEeecCCCCCCCC
Q 002679          213 NFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIP  292 (893)
Q Consensus       213 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~  292 (893)
                      |.++. +|..   .++|+.|++++|+++. +|..   .++|+.|++++|++++ +|..   ..+|+.|++++|++++ +|
T Consensus       272 N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP  338 (788)
T PRK15387        272 NPLTH-LPAL---PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LP  338 (788)
T ss_pred             Cchhh-hhhc---hhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-cc
Confidence            55542 2221   1345566666666652 3331   2456666666666663 3332   2346666666666653 33


Q ss_pred             ccccCCCCCCeeecCCCcCCCCCCCCCCCCCCCCEEEccCCCCccccCCCCCCCCCCCeEEccCCcCCCCcccccCCCcc
Q 002679          293 SEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTN  372 (893)
Q Consensus       293 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~  372 (893)
                      ..   ..+|+.|++++|++++ +|..   .++|+.|++++|.++. +|..   ..+|+.|++++|.+++ +|..   .++
T Consensus       339 ~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~  403 (788)
T PRK15387        339 TL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSE  403 (788)
T ss_pred             cc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccC
Confidence            31   1356777777777663 4432   2456667777777763 4432   2467777777777774 3332   256


Q ss_pred             cceEecccccCCCCCCccccccccCceeccCCccccccCCccccCCCccceeecccccccccCChhhhc
Q 002679          373 LAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGN  441 (893)
Q Consensus       373 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  441 (893)
                      |+.|++++|+++. +|..   ..+|+.|++++|+++ .+|..+.++++|+.|++++|++++..+..+..
T Consensus       404 L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        404 LKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             CCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence            7788888888774 5543   246778888888887 67888888888888888888888776665533

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.81  E-value=2.7e-19  Score=207.58  Aligned_cols=246  Identities=26%  Similarity=0.440  Sum_probs=142.7

Q ss_pred             CCCEEeCCCCCCCCCCCccccCCCCCCeecCCCccCCCCCCCCCCCCCCCCEEeCCCccCCCCCCcccCCCCCCCEEEcc
Q 002679          132 KLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALT  211 (893)
Q Consensus       132 ~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  211 (893)
                      +...|+++++.++ .+|..+.  ++|+.|+|++|.++ .+|..+.  .+|++|++++|+++. +|..+.  .+|+.|+++
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECc
Confidence            4455666665555 3454432  35666666666655 3444332  356666666666553 343332  356666666


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCCCCCCCCCcCCCCCCCCEEEeecCCCCCCC
Q 002679          212 SNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSI  291 (893)
Q Consensus       212 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  291 (893)
                      +|.+. .+|..+.  ++|+.|++++|.++ .+|..+.  ++|+.|++++|++++ +|..+.  ++|+.|++++|.++. +
T Consensus       250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-L  319 (754)
T PRK15370        250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-L  319 (754)
T ss_pred             CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-C
Confidence            66665 3444332  35666666666666 3454443  366777777776663 443332  356677777777663 3


Q ss_pred             CccccCCCCCCeeecCCCcCCCCCCCCCCCCCCCCEEEccCCCCccccCCCCCCCCCCCeEEccCCcCCCCcccccCCCc
Q 002679          292 PSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLT  371 (893)
Q Consensus       292 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~  371 (893)
                      |..+.  ++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+  .++|+.|++++|.++. +|..+.  .
T Consensus       320 P~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~-LP~~l~--~  388 (754)
T PRK15370        320 PETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTN-LPENLP--A  388 (754)
T ss_pred             Ccccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCC-CCHhHH--H
Confidence            43332  567777777777664 454442  56777777777776 345443  2567777777777774 343332  3


Q ss_pred             ccceEecccccCCCCCCccc----cccccCceeccCCcccc
Q 002679          372 NLAAFYLYKNSLSGSIPSEI----GNLKSLSNLDLSENKLS  408 (893)
Q Consensus       372 ~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~Ls~n~l~  408 (893)
                      .|+.|++++|++. .+|..+    ..++.+..|++.+|.++
T Consensus       389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            5777777777776 445433    33466778888888776

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=4.3e-18  Score=197.66  Aligned_cols=248  Identities=25%  Similarity=0.341  Sum_probs=161.7

Q ss_pred             ccccccCCCCCcCCCccccCCCCCccceEEcccCcCcccCCccccCCCCCCEEecCCCcCcCCCCCcCCCCCCCEEEcCC
Q 002679          444 SLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNR  523 (893)
Q Consensus       444 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~  523 (893)
                      +...|+++++.++. +|..+.  +.++.|++++|.++. +|..+.  .+|++|++++|.++.....+  ..+|+.|++++
T Consensus       179 ~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~  250 (754)
T PRK15370        179 NKTELRLKILGLTT-IPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTSIPATL--PDTIQEMELSI  250 (754)
T ss_pred             CceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccccCChhh--hccccEEECcC
Confidence            45678888888775 344332  578888888888884 444433  47888888888887432233  24688888888


Q ss_pred             CcCCCCCCccccCCCCCcEEeccCCcccccCCcCcCCCCCccEEEccCCccCCCCCCCcCCCCCccEEEccCCcccccCC
Q 002679          524 NHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIP  603 (893)
Q Consensus       524 n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p  603 (893)
                      |.+.. +|..+.  .+|+.|++++|+++. +|..+.  ++|+.|++++|++++ +|..+.  ++|+.|++++|+++. +|
T Consensus       251 N~L~~-LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP  320 (754)
T PRK15370        251 NRITE-LPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LP  320 (754)
T ss_pred             CccCc-CChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CC
Confidence            88773 444442  468888888888774 454432  478888888887774 444332  367777888887763 44


Q ss_pred             ccccCcccceeEEeccccccCCCcccccCCcccceecCCCCcccccccccccCCCCCCeeecccCcCCcccchhhhhccC
Q 002679          604 SEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIH  683 (893)
Q Consensus       604 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  683 (893)
                      ..+.  ++|+.|++++|.+++ +|..+  .++|+.|++++|+++ .+|..+.  ++|+.|+|++|++++ +|..+.  .+
T Consensus       321 ~~l~--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~s  389 (754)
T PRK15370        321 ETLP--PGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--AA  389 (754)
T ss_pred             cccc--ccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HH
Confidence            4332  577777888877765 44443  257777888887776 3555553  577778888877764 444443  25


Q ss_pred             ccccccccccCCCc---ccccccCCcccceeeCCCCcCCC
Q 002679          684 LSELDLSHNFLGKE---IPSQICNMRSLEMLNLSHNNLSD  720 (893)
Q Consensus       684 L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~  720 (893)
                      |+.|++++|++++.   +|..+..++.+..|++.+|+++.
T Consensus       390 L~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        390 LQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             HHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence            77777777777632   22333445677777777777763

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=3.2e-19  Score=193.49  Aligned_cols=279  Identities=23%  Similarity=0.241  Sum_probs=141.2

Q ss_pred             cccCCCCCcCC-CccccCCCCCccceEEcccCcCccc----CCccccCCCCCCEEecCCCcCcCCCCCcCCCCCCCEEEc
Q 002679          447 ELQLGDNKLSN-SISHSLGNLTHMTLLALYDNALSGV----IPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRL  521 (893)
Q Consensus       447 ~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l  521 (893)
                      .|+|..+.+++ .....+..+.+|+.++++++.++..    ++..+...+.+++++++++.+.+....+           
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~-----------   70 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGL-----------   70 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHH-----------
Confidence            45666666652 3334445556677777777766432    3333445555666666655544200000           


Q ss_pred             CCCcCCCCCCccccCCCCCcEEeccCCcccccCCcCcCCC---CCccEEEccCCccCC----CCCCCcCCC-CCccEEEc
Q 002679          522 NRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKC---PNLGTFDVSVNNIIG----SLPPEIGDS-SQLHVIDL  593 (893)
Q Consensus       522 ~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~---~~L~~L~ls~n~l~~----~~p~~l~~l-~~L~~L~L  593 (893)
                            ..++..+..+++|+.|++++|.+.+..+..+..+   ++|++|++++|++++    .+...+..+ ++|+.|++
T Consensus        71 ------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L  144 (319)
T cd00116          71 ------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL  144 (319)
T ss_pred             ------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEc
Confidence                  0111223333444444444444433222222222   225555555554442    111222333 55666666


Q ss_pred             cCCccccc----CCccccCcccceeEEeccccccCC----CcccccCCcccceecCCCCccccc----ccccccCCCCCC
Q 002679          594 SANHIIGK----IPSEIGKLSSLIKLILRRNQLFGQ----LPSELGSLIQLEYLDLSSNRLSNS----IPRSLGNLVKLH  661 (893)
Q Consensus       594 s~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~  661 (893)
                      ++|.+++.    ++..+..+++|++|++++|.+.+.    ++..+..+++|+.|++++|.+.+.    ++..+..+++|+
T Consensus       145 ~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~  224 (319)
T cd00116         145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLE  224 (319)
T ss_pred             CCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCC
Confidence            66665521    223344455666666666666532    223344455677777777666532    233455666777


Q ss_pred             eeecccCcCCcccchhhhh-----ccCccccccccccCCC----cccccccCCcccceeeCCCCcCCCC----Cchhhhc
Q 002679          662 YLNLSTNQFIQEIPIKLEK-----LIHLSELDLSHNFLGK----EIPSQICNMRSLEMLNLSHNNLSDF----IPRCFEE  728 (893)
Q Consensus       662 ~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~  728 (893)
                      .|++++|.+++.....+..     .+.|+.|++++|.++.    .+...+..++.|+++|+++|.++..    ....+..
T Consensus       225 ~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~  304 (319)
T cd00116         225 VLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLE  304 (319)
T ss_pred             EEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhh
Confidence            7777777766533333322     2567777777777652    2334455556777777777777754    3333333


Q ss_pred             C-CCCCEEEccCCcc
Q 002679          729 M-NGLLYIDISYNEL  742 (893)
Q Consensus       729 l-~~L~~l~ls~N~l  742 (893)
                      . +.|+.+|+.+|++
T Consensus       305 ~~~~~~~~~~~~~~~  319 (319)
T cd00116         305 PGNELESLWVKDDSF  319 (319)
T ss_pred             cCCchhhcccCCCCC
Confidence            3 4566777766653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.69  E-value=1.1e-18  Score=189.24  Aligned_cols=276  Identities=26%  Similarity=0.296  Sum_probs=168.2

Q ss_pred             eeeccccccc-ccCChhhhcccccccccCCCCCcCCC----ccccCCCCCccceEEcccCcCcc------cCCccccCCC
Q 002679          423 ILYLHSNTLL-GSIPREIGNLKSLFELQLGDNKLSNS----ISHSLGNLTHMTLLALYDNALSG------VIPEELGNLV  491 (893)
Q Consensus       423 ~L~L~~n~l~-~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~------~~~~~~~~l~  491 (893)
                      .|+|..+.++ ......+..+..|+.++++++.++..    ++..+...+.++.++++++.+.+      .++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            4677888887 34556677788899999999998653    45556677889999999988762      2334566677


Q ss_pred             CCCEEecCCCcCcCCCC-CcCCC---CCCCEEEcCCCcCCCC----CCccccCC-CCCcEEeccCCcccccCCcCcCCCC
Q 002679          492 KLTMLTLSDNQLQGSIP-NLRNL---TNLIRLRLNRNHLTCN----ISESFGIH-PKLTFIDLSHNNFYGQISSDWGKCP  562 (893)
Q Consensus       492 ~L~~L~Ls~n~l~~~~~-~l~~~---~~L~~L~l~~n~l~~~----~~~~~~~~-~~L~~L~ls~n~l~~~~~~~~~~~~  562 (893)
                      +|+.|++++|.+.+..+ .+..+   ++|++|++++|++++.    +...+..+ ++|+.|++++|.+++....      
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~------  155 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE------  155 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH------
Confidence            88888888887764332 22222   3466666666665521    11222333 4555555555554421110      


Q ss_pred             CccEEEccCCccCCCCCCCcCCCCCccEEEccCCcccc----cCCccccCcccceeEEeccccccCC----CcccccCCc
Q 002679          563 NLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIG----KIPSEIGKLSSLIKLILRRNQLFGQ----LPSELGSLI  634 (893)
Q Consensus       563 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~  634 (893)
                                    .++..+..++.|++|++++|.+.+    .++..+..+++|+.|++++|.+.+.    ++..+..++
T Consensus       156 --------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~  221 (319)
T cd00116         156 --------------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK  221 (319)
T ss_pred             --------------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccC
Confidence                          112223344455555555555542    1222334445666666666665533    233445667


Q ss_pred             ccceecCCCCccccccccccc-----CCCCCCeeecccCcCCc----ccchhhhhccCccccccccccCCCc----cccc
Q 002679          635 QLEYLDLSSNRLSNSIPRSLG-----NLVKLHYLNLSTNQFIQ----EIPIKLEKLIHLSELDLSHNFLGKE----IPSQ  701 (893)
Q Consensus       635 ~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~  701 (893)
                      +|++|++++|.+++.....+.     ..+.|+.|++++|.++.    .+...+..+++|+++++++|.++..    ....
T Consensus       222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~  301 (319)
T cd00116         222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES  301 (319)
T ss_pred             CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence            788888888777653222222     23688888888888762    3344566667888888888888755    4444


Q ss_pred             ccCC-cccceeeCCCCcC
Q 002679          702 ICNM-RSLEMLNLSHNNL  718 (893)
Q Consensus       702 ~~~l-~~L~~L~Ls~N~l  718 (893)
                      +... +.|++||+.+|++
T Consensus       302 ~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         302 LLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HhhcCCchhhcccCCCCC
Confidence            4445 6888888888864

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=1.9e-18  Score=154.22  Aligned_cols=159  Identities=32%  Similarity=0.553  Sum_probs=112.9

Q ss_pred             ccCCCCCCCCEEECCCCCCCccCCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCeecCCCccCCCCCCCCCCCCCC
Q 002679          101 FSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSY  180 (893)
Q Consensus       101 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  180 (893)
                      +.+..+.+++.|.||+|+++- +|+.+..+.+|++|++++|+++ .+|.+++.++.|+.|+++-|++. ..|..|+.++.
T Consensus        27 ~gLf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~  103 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA  103 (264)
T ss_pred             ccccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCch
Confidence            345667788888999998875 4557888999999999999988 78888999999999999988887 78888888888


Q ss_pred             CCEEeCCCccCCC-CCCcccCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcc
Q 002679          181 IEALHLFKNQLSG-PIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALG  259 (893)
Q Consensus       181 L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  259 (893)
                      |+.|||.+|++.. ..|..|..++.|+.|+++.|.+. .+|..++++++|+.|.+..|.+- ..|..++.+++|++|.+.
T Consensus       104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiq  181 (264)
T KOG0617|consen  104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQ  181 (264)
T ss_pred             hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcc
Confidence            8888888877653 45556666666666666666555 44555555555555555555544 345555555555555555


Q ss_pred             CCCCC
Q 002679          260 NNKLC  264 (893)
Q Consensus       260 ~n~l~  264 (893)
                      +|+++
T Consensus       182 gnrl~  186 (264)
T KOG0617|consen  182 GNRLT  186 (264)
T ss_pred             cceee
Confidence            55554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.60  E-value=1.3e-17  Score=148.98  Aligned_cols=164  Identities=37%  Similarity=0.571  Sum_probs=106.1

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCeecCCCccCCCCCCCCCCCCCCCCEEeCCCccCCCCCCcccCCCCCCC
Q 002679          127 IGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLN  206 (893)
Q Consensus       127 ~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  206 (893)
                      +-++.+.+.|.||+|.++ .+|..+..+.+|++|++.+|+++ .+|.+++.+++|++|+++-|.+. ..|..|+.++.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            345677788889999998 67778899999999999999988 78888888888888888777654 4566666666666


Q ss_pred             EEEccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCCCCCCCCCcCCCCCCCCEEEeecCC
Q 002679          207 ELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNS  286 (893)
Q Consensus       207 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  286 (893)
                      .||+++|++..                       ...|..|..++.|+-|.++.|.+. .+|..++++++|+.|.++.|.
T Consensus       106 vldltynnl~e-----------------------~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdnd  161 (264)
T KOG0617|consen  106 VLDLTYNNLNE-----------------------NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDND  161 (264)
T ss_pred             hhhcccccccc-----------------------ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCc
Confidence            66666665542                       123444444444555555555554 445555555555555555555


Q ss_pred             CCCCCCccccCCCCCCeeecCCCcCCCCCCCCC
Q 002679          287 FSSSIPSEIGNLKSLSILELGENRLNGSIPLSL  319 (893)
Q Consensus       287 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~  319 (893)
                      +- .+|..++.++.|++|.+.+|+++ .+|..+
T Consensus       162 ll-~lpkeig~lt~lrelhiqgnrl~-vlppel  192 (264)
T KOG0617|consen  162 LL-SLPKEIGDLTRLRELHIQGNRLT-VLPPEL  192 (264)
T ss_pred             hh-hCcHHHHHHHHHHHHhcccceee-ecChhh
Confidence            54 44555555666666666666655 344333

>PLN03150 hypothetical protein; Provisional

Probab=99.60  E-value=4.7e-15  Score=172.34  Aligned_cols=147  Identities=37%  Similarity=0.621  Sum_probs=113.5

Q ss_pred             CCHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCC-----ccCceeeCC---C--CCEEEEEcCCCCCccccCCcc
Q 002679           33 DSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPC-----AWFGIHCNH---V--GRVNSINLTNVGLKGTLHDFS  102 (893)
Q Consensus        33 ~~~~~~~~ll~~k~~~~~~~~~~~l~~W~~~~~~~~~~c-----~w~gv~c~~---~--~~v~~l~l~~~~l~g~~~~~~  102 (893)
                      ..++|.+||+++|+++.. + .  ..+|.     + ++|     .|.||.|..   .  .+|+.|+|+++++.|.+| ..
T Consensus       369 t~~~~~~aL~~~k~~~~~-~-~--~~~W~-----g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip-~~  437 (623)
T PLN03150        369 TLLEEVSALQTLKSSLGL-P-L--RFGWN-----G-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIP-ND  437 (623)
T ss_pred             cCchHHHHHHHHHHhcCC-c-c--cCCCC-----C-CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCC-HH
Confidence            456899999999999864 3 1  24796     2 334     799999952   2  248888888888888888 67


Q ss_pred             CCCCCCCCEEECCCCCCCccCCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCeecCCCccCCCCCCCCCCCC-CCC
Q 002679          103 FSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHL-SYI  181 (893)
Q Consensus       103 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L  181 (893)
                      +..+++|++|+|++|.+.|.+|..++.+++|++|+|++|.++|.+|..++++++|++|+|++|.++|.+|..++.+ .++
T Consensus       438 i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~  517 (623)
T PLN03150        438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHR  517 (623)
T ss_pred             HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccC
Confidence            8888888888888888888888888888888888888888888888888888888888888888888888777653 345


Q ss_pred             CEEeCCCcc
Q 002679          182 EALHLFKNQ  190 (893)
Q Consensus       182 ~~L~L~~n~  190 (893)
                      ..+++.+|.
T Consensus       518 ~~l~~~~N~  526 (623)
T PLN03150        518 ASFNFTDNA  526 (623)
T ss_pred             ceEEecCCc
Confidence            566665554

>PLN03150 hypothetical protein; Provisional

Probab=99.54  E-value=1.7e-14  Score=167.69  Aligned_cols=117  Identities=29%  Similarity=0.508  Sum_probs=66.7

Q ss_pred             CCeeecccCcCCcccchhhhhccCccccccccccCCCcccccccCCcccceeeCCCCcCCCCCchhhhcCCCCCEEEccC
Q 002679          660 LHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISY  739 (893)
Q Consensus       660 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~  739 (893)
                      ++.|+|++|.+.|.+|..+..+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..++.+++|+.||+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            44555555555555555555555555555555555555555555555555566666666555555555555666666666


Q ss_pred             CcccccCCCCc--ccccchhhhhcCCCCCCCCCCCCCCCC
Q 002679          740 NELHGPIPNST--AFSDALMEALQGNEGLCGDIKGFQSCK  777 (893)
Q Consensus       740 N~l~g~ip~~~--~~~~~~~~~~~gn~~lc~~~~~~~~C~  777 (893)
                      |+++|.+|..-  .+.......+.+|+.+|+. |....|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~-p~l~~C~  538 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGI-PGLRACG  538 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCC-CCCCCCc
Confidence            66666555321  0111122346788889986 5556785

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.12  E-value=4.1e-11  Score=142.11  Aligned_cols=199  Identities=28%  Similarity=0.329  Sum_probs=126.9

Q ss_pred             CEEEEEcCCCCCccccCCccCCCCCCCCEEECCCCC--CCccCCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCee
Q 002679           83 RVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQ--IFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFL  160 (893)
Q Consensus        83 ~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L  160 (893)
                      .|+.+.+.++.+.-.   ..=...+.|++|-+.+|.  +....++.|..++.|++||||+|.--+.+|..++.|-+||+|
T Consensus       524 ~~rr~s~~~~~~~~~---~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEHI---AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             heeEEEEeccchhhc---cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            445555555443321   112234578888888885  555455568889999999999887767899999999999999


Q ss_pred             cCCCccCCCCCCCCCCCCCCCCEEeCCCccCCCCCCcccCCCCCCCEEEccCCCC--CCCCCCCCCCCCCCCEEEccCCc
Q 002679          161 YLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFL--KGSIPPSLGNLTNLAILYLHNNS  238 (893)
Q Consensus       161 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l--~~~~~~~l~~l~~L~~L~L~~n~  238 (893)
                      +++++.+. .+|..+++|+.|.+|++..+.-...+|.....+++|++|.+.....  ....-..+.++.+|+.+......
T Consensus       601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s  679 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS  679 (889)
T ss_pred             cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence            99999988 8899999999999999988876666677777788999888876542  22222334555555555553332


Q ss_pred             CCCCCCccccCCCCCC----EEEccCCCCCCCCCCcCCCCCCCCEEEeecCCCC
Q 002679          239 LSGSIPSEIGNLKSLS----SLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFS  288 (893)
Q Consensus       239 l~~~~~~~l~~l~~L~----~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  288 (893)
                      .  .+-..+..+++|.    .+.+.++... ..+..+..+.+|+.|.+.++.+.
T Consensus       680 ~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  680 V--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             h--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCc
Confidence            2  0111122222222    2222222222 23444556667777777766654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.11  E-value=1.1e-10  Score=130.34  Aligned_cols=199  Identities=40%  Similarity=0.583  Sum_probs=127.3

Q ss_pred             EEECCCCCCCccCCccccCCCCCCEEeCCCCCCCCCCCccccCCC-CCCeecCCCccCCCCCCCCCCCCCCCCEEeCCCc
Q 002679          111 YLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLS-MLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKN  189 (893)
Q Consensus       111 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  189 (893)
                      .+++..+.+...+ ..+..++.++.|++.+|.++ .+|.....+. +|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            4566665553221 23444566777777777766 5555555553 6777777777666 55556667777777777777


Q ss_pred             cCCCCCCcccCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCCCCCCCCC
Q 002679          190 QLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPL  269 (893)
Q Consensus       190 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~  269 (893)
                      +++.. |...+.++.|+.|++++|++. .+|........|+++.+++|.+. ..+..+.+++++..+.+.+|++. ..+.
T Consensus       174 ~l~~l-~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~  249 (394)
T COG4886         174 DLSDL-PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE  249 (394)
T ss_pred             hhhhh-hhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence            76643 333336667777777777776 34444445556777777777433 34455667777777777777765 3356


Q ss_pred             cCCCCCCCCEEEeecCCCCCCCCccccCCCCCCeeecCCCcCCCCCCCC
Q 002679          270 FLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLS  318 (893)
Q Consensus       270 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~  318 (893)
                      .++.++++++|++++|.++...+  ++.+.+++.|++++|.+....|..
T Consensus       250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             hhccccccceecccccccccccc--ccccCccCEEeccCccccccchhh
Confidence            67777778888888888774432  777788888888888777655543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.11  E-value=2.3e-12  Score=136.78  Aligned_cols=182  Identities=32%  Similarity=0.511  Sum_probs=145.3

Q ss_pred             CCCCCCCEEECCCCCCCccCCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCeecCCCccCCCCCCCCCCCCCCCCE
Q 002679          104 SSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEA  183 (893)
Q Consensus       104 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  183 (893)
                      -.+..-...||+.|.+.. +|..++.+..|+.+.|..|.+. .+|..++++..|.+|||+.|+++ .+|..+..|+ |+.
T Consensus        72 ~~ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv  147 (722)
T KOG0532|consen   72 YDLTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKV  147 (722)
T ss_pred             ccccchhhhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence            355666778999998864 6888888889999999999887 88899999999999999999988 7888887776 888


Q ss_pred             EeCCCccCCCCCCcccCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCCC
Q 002679          184 LHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKL  263 (893)
Q Consensus       184 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  263 (893)
                      |-+++|+++ .+|..++.+.+|.+||.+.|.+. .+|..++.+.+|+.|.++.|++. .+|..+.. -.|..||++.|++
T Consensus       148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNki  223 (722)
T KOG0532|consen  148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKI  223 (722)
T ss_pred             EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCce
Confidence            888888886 56777778888888888888887 55667788888888888888876 56666663 3578888888888


Q ss_pred             CCCCCCcCCCCCCCCEEEeecCCCCCCCCccc
Q 002679          264 CGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEI  295 (893)
Q Consensus       264 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l  295 (893)
                      . .+|..|.+|+.|++|.|.+|.+.. .|..+
T Consensus       224 s-~iPv~fr~m~~Lq~l~LenNPLqS-PPAqI  253 (722)
T KOG0532|consen  224 S-YLPVDFRKMRHLQVLQLENNPLQS-PPAQI  253 (722)
T ss_pred             e-ecchhhhhhhhheeeeeccCCCCC-ChHHH
Confidence            7 678888888888888888888773 34433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.07  E-value=3.6e-10  Score=126.12  Aligned_cols=152  Identities=43%  Similarity=0.603  Sum_probs=67.1

Q ss_pred             CCCEEEccCCcCCCCCCccccCCCCCCEEEccCCCCCCCCCCcCCCCCCCCEEEeecCCCCCCCCccccCCCCCCeeecC
Q 002679          228 NLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELG  307 (893)
Q Consensus       228 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  307 (893)
                      +|+.|++++|++. .+|..+..++.|+.|++++|+++ .+|...+..++|+.|++++|++. .+|........|+++.++
T Consensus       141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~  217 (394)
T COG4886         141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS  217 (394)
T ss_pred             hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence            4444444444444 22233444455555555555554 23333334445555555555544 233323333345555555


Q ss_pred             CCcCCCCCCCCCCCCCCCCEEEccCCCCccccCCCCCCCCCCCeEEccCCcCCCCcccccCCCcccceEecccccCCCC
Q 002679          308 ENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGS  386 (893)
Q Consensus       308 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  386 (893)
                      +|+.. ..+..+.++.++..+.+.+|++.. .+..++.+++++.|++++|.++...+  ++.+.+++.+++++|.+...
T Consensus       218 ~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         218 NNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             CCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence            55322 233344444444444444444432 13334444445555555554443222  44444444444444444433

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.06  E-value=4.7e-12  Score=134.46  Aligned_cols=175  Identities=34%  Similarity=0.546  Sum_probs=113.0

Q ss_pred             CCCCCCEEeCCCCCCCCCCCccccCCCCCCeecCCCccCCCCCCCCCCCCCCCCEEeCCCccCCCCCCcccCCCCCCCEE
Q 002679          129 NISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNEL  208 (893)
Q Consensus       129 ~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  208 (893)
                      .+.--...||+.|++. .+|..++.+..|+.+.|..|.+. .+|..+.++..|++||++.|+++                
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS----------------  134 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS----------------  134 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh----------------
Confidence            4555567788888888 78888888888888888888876 67777777777777766666654                


Q ss_pred             EccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCCCCCCCCCcCCCCCCCCEEEeecCCCC
Q 002679          209 ALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFS  288 (893)
Q Consensus       209 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  288 (893)
                               ..|..+..|+ |+.|-+++|+++ .+|..++....|..||.+.|.+. .+|..++.+.+|+.|.++.|++.
T Consensus       135 ---------~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~  202 (722)
T KOG0532|consen  135 ---------HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE  202 (722)
T ss_pred             ---------cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh
Confidence                     2333333332 566666666655 45566665666666666666665 45555666666666666666665


Q ss_pred             CCCCccccCCCCCCeeecCCCcCCCCCCCCCCCCCCCCEEEccCCCCc
Q 002679          289 SSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLS  336 (893)
Q Consensus       289 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  336 (893)
                       .+|..+..+ .|..||++.|++. .+|-.|.+|..|++|.|.+|.+.
T Consensus       203 -~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  203 -DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             -hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence             344445533 3666666666665 55666666666666666666554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.01  E-value=2.3e-10  Score=108.59  Aligned_cols=85  Identities=31%  Similarity=0.343  Sum_probs=24.7

Q ss_pred             CcccceecCCCCcccccccccccCCCCCCeeecccCcCCcccchhhhhccCccccccccccCCCcc-cccccCCccccee
Q 002679          633 LIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEI-PSQICNMRSLEML  711 (893)
Q Consensus       633 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L  711 (893)
                      +.+|+.|++++|.++..  +.+..++.|+.|++++|+++...+.....+++|++|+|++|+|...- -..+..+++|++|
T Consensus        41 l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L  118 (175)
T PF14580_consen   41 LDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL  118 (175)
T ss_dssp             -TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred             hcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence            44555555555555532  23455555666666666554432211234555555555555554321 1233444555555


Q ss_pred             eCCCCcCC
Q 002679          712 NLSHNNLS  719 (893)
Q Consensus       712 ~Ls~N~l~  719 (893)
                      +|.+|+++
T Consensus       119 ~L~~NPv~  126 (175)
T PF14580_consen  119 SLEGNPVC  126 (175)
T ss_dssp             E-TT-GGG
T ss_pred             eccCCccc
Confidence            55555554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.99  E-value=1.5e-10  Score=113.44  Aligned_cols=111  Identities=26%  Similarity=0.274  Sum_probs=55.2

Q ss_pred             CCcccceecCCCCcccccccccccCCCCCCeeecccCcCCcccchhhhhccCccccccccccCCCcccccccCCccccee
Q 002679          632 SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEML  711 (893)
Q Consensus       632 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  711 (893)
                      -.+.++.|++|+|.+...  +.+..+++|+.||||+|.++.. -.+=..+.+.+.|.|+.|.+...  +.+..+-+|..|
T Consensus       305 L~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnL  379 (490)
T KOG1259|consen  305 LAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNL  379 (490)
T ss_pred             hccceeEEeccccceeee--hhhhhcccceEeecccchhHhh-hhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheec
Confidence            344444445555544422  2244455555555555544322 11223344455555555555322  334455555666


Q ss_pred             eCCCCcCCCCC-chhhhcCCCCCEEEccCCcccccCC
Q 002679          712 NLSHNNLSDFI-PRCFEEMNGLLYIDISYNELHGPIP  747 (893)
Q Consensus       712 ~Ls~N~l~~~~-p~~l~~l~~L~~l~ls~N~l~g~ip  747 (893)
                      |+++|++.... -..+++++-|+.+.+.+||+.+.+.
T Consensus       380 Dl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  380 DLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             cccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            66666555432 2455566666666677777666544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.98  E-value=1.1e-11  Score=124.47  Aligned_cols=133  Identities=20%  Similarity=0.312  Sum_probs=67.4

Q ss_pred             CCCCEEEccCCcCCCCCC----ccccCCCCCCEEEccCCCCCCC----CCCcCCCCCCCCEEEeecCCCCCC----CCcc
Q 002679          227 TNLAILYLHNNSLSGSIP----SEIGNLKSLSSLALGNNKLCGS----IPLFLGNLTNLDTLYLRNNSFSSS----IPSE  294 (893)
Q Consensus       227 ~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~~~~  294 (893)
                      +.|+++....|++.....    ..+...+.|+.+.++.|.+...    +...+..+++|+.|||.+|.++..    +...
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka  236 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA  236 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence            345555555554432111    1233345555555555554311    112344556666666666655532    2233


Q ss_pred             ccCCCCCCeeecCCCcCCCCCCCCC-----CCCCCCCEEEccCCCCccc----cCCCCCCCCCCCeEEccCCcC
Q 002679          295 IGNLKSLSILELGENRLNGSIPLSL-----GNLTNLDTLYLYTNSLSGS----IPSEIGNLKSLSGLELADNEL  359 (893)
Q Consensus       295 l~~l~~L~~L~Ls~n~l~~~~p~~~-----~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~ls~n~l  359 (893)
                      +..+++|++|++++|.+.......+     ...|.|+.+.+.+|.++..    +...+...+.|..|++++|.+
T Consensus       237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            4455566666666666554322222     1256677777777766432    122234467777777777777

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.95  E-value=2.8e-10  Score=135.11  Aligned_cols=179  Identities=26%  Similarity=0.360  Sum_probs=127.3

Q ss_pred             CEEEEEcCCCCC-ccccCCccCCCCCCCCEEECCCCCCCccCCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCeec
Q 002679           83 RVNSINLTNVGL-KGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLY  161 (893)
Q Consensus        83 ~v~~l~l~~~~l-~g~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~  161 (893)
                      .++.+-+.++.. -..++...|..++.|++|||++|.=-+.+|..++.|-+||||+|+++.+. .+|..+++|..|.+|+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN  624 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence            466777766652 23344244888999999999998766789999999999999999999998 8999999999999999


Q ss_pred             CCCccCCCCCCCCCCCCCCCCEEeCCCcc--CCCCCCcccCCCCCCCEEEccCCCCCCCCCCCCCCCCCCC----EEEcc
Q 002679          162 LSANQFSGRIPPQIGHLSYIEALHLFKNQ--LSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLA----ILYLH  235 (893)
Q Consensus       162 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~L~  235 (893)
                      +..+.-...+|.....+.+||+|.+....  .+...-..+.++.+|+.+.......  .+-..+..+++|.    .+.+.
T Consensus       625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~  702 (889)
T KOG4658|consen  625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIE  702 (889)
T ss_pred             cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhc
Confidence            99988766777777889999999997664  2223333455666666666543332  1111223333333    23333


Q ss_pred             CCcCCCCCCccccCCCCCCEEEccCCCCCC
Q 002679          236 NNSLSGSIPSEIGNLKSLSSLALGNNKLCG  265 (893)
Q Consensus       236 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  265 (893)
                      ++... ..+..+..+.+|+.|.+.++.+..
T Consensus       703 ~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e  731 (889)
T KOG4658|consen  703 GCSKR-TLISSLGSLGNLEELSILDCGISE  731 (889)
T ss_pred             ccccc-eeecccccccCcceEEEEcCCCch
Confidence            32322 345567788999999999988764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.91  E-value=8.1e-10  Score=104.87  Aligned_cols=109  Identities=30%  Similarity=0.346  Sum_probs=44.6

Q ss_pred             CCcccceecCCCCccccccccccc-CCCCCCeeecccCcCCcccchhhhhccCccccccccccCCCcccccccCCcccce
Q 002679          632 SLIQLEYLDLSSNRLSNSIPRSLG-NLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEM  710 (893)
Q Consensus       632 ~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  710 (893)
                      +...+++|+|.+|.|+.+  +.++ .+.+|+.|||++|.++...  .+..++.|++|++++|+|+...+.....+++|++
T Consensus        17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             cccccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            556788999999998854  3465 5789999999999997653  5788999999999999997654332246899999


Q ss_pred             eeCCCCcCCCCC-chhhhcCCCCCEEEccCCcccc
Q 002679          711 LNLSHNNLSDFI-PRCFEEMNGLLYIDISYNELHG  744 (893)
Q Consensus       711 L~Ls~N~l~~~~-p~~l~~l~~L~~l~ls~N~l~g  744 (893)
                      |++++|+|.... -..++.+++|+.|++.+||++.
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            999999998753 3677889999999999999864

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.91  E-value=1.1e-10  Score=117.60  Aligned_cols=133  Identities=29%  Similarity=0.346  Sum_probs=74.0

Q ss_pred             ccceeEEeccccccCC----CcccccCCcccceecCCCCcccc----cccccccCCCCCCeeecccCcCCcccc----hh
Q 002679          610 SSLIKLILRRNQLFGQ----LPSELGSLIQLEYLDLSSNRLSN----SIPRSLGNLVKLHYLNLSTNQFIQEIP----IK  677 (893)
Q Consensus       610 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p----~~  677 (893)
                      +.|+.++..+|++..-    +...|...+.|+.+.++.|.|..    .+...|..|+.|+.|||..|-++..-.    ..
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka  236 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA  236 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence            4455555555554322    22334445556666666665431    223455666677777777776654332    33


Q ss_pred             hhhccCccccccccccCCCcccccc-----cCCcccceeeCCCCcCCCC----CchhhhcCCCCCEEEccCCcc
Q 002679          678 LEKLIHLSELDLSHNFLGKEIPSQI-----CNMRSLEMLNLSHNNLSDF----IPRCFEEMNGLLYIDISYNEL  742 (893)
Q Consensus       678 l~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~l~ls~N~l  742 (893)
                      +..+++|++|++++|.+.......|     ...|+|++|.+.+|.++..    +...+...+.|..|+|++|.+
T Consensus       237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            4455667777777776655433222     2356777777777777643    334445566677777777765

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=2.3e-10  Score=118.33  Aligned_cols=208  Identities=29%  Similarity=0.348  Sum_probs=102.1

Q ss_pred             cCCCCCCeeecCCCcCCCCCC-CCCCCCCCCCEEEccCCCCccccC--CCCCCCCCCCeEEccCCcCCCCccc-ccCCCc
Q 002679          296 GNLKSLSILELGENRLNGSIP-LSLGNLTNLDTLYLYTNSLSGSIP--SEIGNLKSLSGLELADNELSSSIPH-YLGNLT  371 (893)
Q Consensus       296 ~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~ls~n~l~~~~~~-~l~~l~  371 (893)
                      +++.+|+++.|.++....... .....|++++.|+|+.|-++...+  .....+|+|+.|+++.|.+...... .-..+ 
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l-  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL-  196 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh-
Confidence            456677777777776642211 234456666777776665543211  2234566666666666655432111 01123 


Q ss_pred             ccceEecccccCCCCCCccccccccCceeccCCcccccc-CCccccCCCccceeecccccccccCChhhhcccccccccC
Q 002679          372 NLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGS-IPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQL  450 (893)
Q Consensus       372 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L  450 (893)
                                             ++|+.|.++.|.++-. +......+|+|+.|+|..|.....-......+..|++|||
T Consensus       197 -----------------------~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdL  253 (505)
T KOG3207|consen  197 -----------------------SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDL  253 (505)
T ss_pred             -----------------------hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccc
Confidence                                   3444444444444311 1112234455555555555322222222333445566666


Q ss_pred             CCCCcCCCc-cccCCCCCccceEEcccCcCcccC-Ccc-----ccCCCCCCEEecCCCcCcC--CCCCcCCCCCCCEEEc
Q 002679          451 GDNKLSNSI-SHSLGNLTHMTLLALYDNALSGVI-PEE-----LGNLVKLTMLTLSDNQLQG--SIPNLRNLTNLIRLRL  521 (893)
Q Consensus       451 s~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~-~~~-----~~~l~~L~~L~Ls~n~l~~--~~~~l~~~~~L~~L~l  521 (893)
                      ++|++.... ....+.++.|..|+++.+.+...- |+.     ...+++|++|+++.|++..  .+..+..+++|+.|.+
T Consensus       254 s~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~  333 (505)
T KOG3207|consen  254 SNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI  333 (505)
T ss_pred             cCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence            665554321 123445566666666666655432 211     2456677777777777742  2223444555555555


Q ss_pred             CCCcCC
Q 002679          522 NRNHLT  527 (893)
Q Consensus       522 ~~n~l~  527 (893)
                      ..|.+.
T Consensus       334 ~~n~ln  339 (505)
T KOG3207|consen  334 TLNYLN  339 (505)
T ss_pred             cccccc
Confidence            555543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=1.9e-10  Score=118.96  Aligned_cols=135  Identities=25%  Similarity=0.237  Sum_probs=56.2

Q ss_pred             CCCCCcEEeccCCcccccCC--cCcCCCCCccEEEccCCccCCCCCCCc-CCCCCccEEEccCCcccc-cCCccccCccc
Q 002679          536 IHPKLTFIDLSHNNFYGQIS--SDWGKCPNLGTFDVSVNNIIGSLPPEI-GDSSQLHVIDLSANHIIG-KIPSEIGKLSS  611 (893)
Q Consensus       536 ~~~~L~~L~ls~n~l~~~~~--~~~~~~~~L~~L~ls~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~  611 (893)
                      .+++++.||++.|-++...+  .....+++|+.|+++.|++........ ..++.|+.|.++.|.++- .+...+..+|+
T Consensus       144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs  223 (505)
T KOG3207|consen  144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS  223 (505)
T ss_pred             hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence            44455555555544432211  112334455555555554432222111 124455555555555541 11122233455


Q ss_pred             ceeEEeccccccCCCcccccCCcccceecCCCCcccccc-cccccCCCCCCeeecccCcC
Q 002679          612 LIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSI-PRSLGNLVKLHYLNLSTNQF  670 (893)
Q Consensus       612 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l  670 (893)
                      |+.|+|..|...........-+..|++|||++|++.... -...+.++.|+.|+++.+.+
T Consensus       224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi  283 (505)
T KOG3207|consen  224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGI  283 (505)
T ss_pred             HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCc
Confidence            555555555422222222333444555555555544211 01234444455555554444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.87  E-value=4e-10  Score=110.47  Aligned_cols=136  Identities=28%  Similarity=0.329  Sum_probs=98.0

Q ss_pred             ccccccccCceeccCCccccccCCccccCCCccceeecccccccccCChhhhcccccccccCCCCCcCCCccccCCCCCc
Q 002679          389 SEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTH  468 (893)
Q Consensus       389 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~  468 (893)
                      ..+..++.|+++|+|+|.++ .+.++..-.|.++.|++++|.+...  ..+..+++|+.||+++|.++. +..+-..+.+
T Consensus       278 ~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGN  353 (490)
T KOG1259|consen  278 VSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGN  353 (490)
T ss_pred             EecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcC
Confidence            33445577888888888887 5566677778888888888888743  337778888888888887764 2333445677


Q ss_pred             cceEEcccCcCcccCCccccCCCCCCEEecCCCcCcCC--CCCcCCCCCCCEEEcCCCcCCCCC
Q 002679          469 MTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGS--IPNLRNLTNLIRLRLNRNHLTCNI  530 (893)
Q Consensus       469 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~l~~~~~L~~L~l~~n~l~~~~  530 (893)
                      ++.|.++.|.+...  ..++.+-+|..||+++|++...  ...+++++.|+.+.+.+|++.+..
T Consensus       354 IKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  354 IKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             EeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            88888888877643  4566777888888888888653  236777777777777777776543

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.85  E-value=3.4e-09  Score=75.22  Aligned_cols=41  Identities=37%  Similarity=0.902  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCC-CCCCCccCceeeC
Q 002679           35 TEEVHALLKWKTSLQNHDKGSLLPSWTLNNAT-KISPCAWFGIHCN   79 (893)
Q Consensus        35 ~~~~~~ll~~k~~~~~~~~~~~l~~W~~~~~~-~~~~c~w~gv~c~   79 (893)
                      ++|++||++||+++..++ .+.+.+|+   .. ..+||+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~-~~~l~~W~---~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDP-SGVLSSWN---PSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC--CCCTT-----TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhccccc-CcccccCC---CcCCCCCeeeccEEeC
Confidence            689999999999998655 67899998   22 2799999999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.75  E-value=9.3e-10  Score=122.81  Aligned_cols=19  Identities=21%  Similarity=0.205  Sum_probs=10.3

Q ss_pred             cccccCceeccCCcccccc
Q 002679          392 GNLKSLSNLDLSENKLSGS  410 (893)
Q Consensus       392 ~~l~~L~~L~Ls~n~l~~~  410 (893)
                      ...+.++.+.+..|.....
T Consensus       302 ~~~~~~~~~~~~~~~~~~~  320 (414)
T KOG0531|consen  302 SAAPTLVTLTLELNPIRKI  320 (414)
T ss_pred             cccccccccccccCccccc
Confidence            3345566666666655543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.74  E-value=1.6e-09  Score=120.91  Aligned_cols=36  Identities=39%  Similarity=0.588  Sum_probs=16.6

Q ss_pred             ccccccccccCCCcccccccCCcccceeeCCCCcCCC
Q 002679          684 LSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSD  720 (893)
Q Consensus       684 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  720 (893)
                      |+.+++++|++.. ++..+..+..++.||+++|++..
T Consensus       234 L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~  269 (414)
T KOG0531|consen  234 LRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISN  269 (414)
T ss_pred             HHHHhcccCcccc-ccccccccccccccchhhccccc
Confidence            4455555555422 12333444455555555555544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.73  E-value=4.4e-09  Score=81.90  Aligned_cols=59  Identities=41%  Similarity=0.640  Sum_probs=33.3

Q ss_pred             CccccccccccCCCcccccccCCcccceeeCCCCcCCCCCchhhhcCCCCCEEEccCCc
Q 002679          683 HLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNE  741 (893)
Q Consensus       683 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~  741 (893)
                      +|++|++++|+++...+..|..+++|++|++++|+++...|..|..+++|+++++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            44555555555554444555555555555555555555555555555556666665554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.71  E-value=5.8e-09  Score=81.25  Aligned_cols=60  Identities=38%  Similarity=0.514  Sum_probs=41.8

Q ss_pred             CCCeeecccCcCCcccchhhhhccCccccccccccCCCcccccccCCcccceeeCCCCcC
Q 002679          659 KLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNL  718 (893)
Q Consensus       659 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  718 (893)
                      +|+.|++++|+++...+..|.++++|++|++++|.++...|..|..+++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            566667777766666666667777777777777777666666777777777777777764

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.51  E-value=3.1e-09  Score=116.21  Aligned_cols=199  Identities=23%  Similarity=0.200  Sum_probs=121.4

Q ss_pred             CCCCcEEeccCCcccccC-CcCcCCCCCccEEEccCCccCCCCCCCcCC-CCCccEEEccCCccc----------ccCCc
Q 002679          537 HPKLTFIDLSHNNFYGQI-SSDWGKCPNLGTFDVSVNNIIGSLPPEIGD-SSQLHVIDLSANHII----------GKIPS  604 (893)
Q Consensus       537 ~~~L~~L~ls~n~l~~~~-~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~----------~~~p~  604 (893)
                      +++++.+.+-.-.-.+.. |-.+..+.+|++|.+.++.+...  ..+.. -..|+.|... |.+.          |.+..
T Consensus        83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~n  159 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISN  159 (1096)
T ss_pred             HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhcccccc
Confidence            345555555443333322 55566778888888888877541  11111 0123333221 1110          11111


Q ss_pred             cccCcccceeEEeccccccCCCcccccCCcccceecCCCCcccccccccccCCCCCCeeecccCcCCcccchhhhhccCc
Q 002679          605 EIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHL  684 (893)
Q Consensus       605 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  684 (893)
                      .+ ....|...+.+.|.+. ...+.+.-++.|+.|||++|+++..  +.+..|+.|+.|||++|.+....--...++. |
T Consensus       160 s~-~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L  234 (1096)
T KOG1859|consen  160 SP-VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-L  234 (1096)
T ss_pred             ch-hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-h
Confidence            11 1234566677777764 3345566777888888888888754  3677888888888888887665554555555 8


Q ss_pred             cccccccccCCCcccccccCCcccceeeCCCCcCCCCC-chhhhcCCCCCEEEccCCccccc
Q 002679          685 SELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFI-PRCFEEMNGLLYIDISYNELHGP  745 (893)
Q Consensus       685 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~l~ls~N~l~g~  745 (893)
                      +.|+|++|.++..  ..+.++++|+.||+++|-|++.- -..+..+.+|..|.|.+||+.|.
T Consensus       235 ~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  235 QLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             eeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            8888888887654  34667888888888888887652 23345566788888888887653

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.35  E-value=2.1e-08  Score=110.00  Aligned_cols=197  Identities=24%  Similarity=0.238  Sum_probs=117.0

Q ss_pred             CCCCCEEEcCCCcCCCCC-CccccCCCCCcEEeccCCcccccCCcCcCCC-CCccEEEccCCccC----------CCCCC
Q 002679          513 LTNLIRLRLNRNHLTCNI-SESFGIHPKLTFIDLSHNNFYGQISSDWGKC-PNLGTFDVSVNNII----------GSLPP  580 (893)
Q Consensus       513 ~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~-~~L~~L~ls~n~l~----------~~~p~  580 (893)
                      +++++.+.+-.-.-.+.. |-.+..+.+|+.|.+.++.+...  ..+..+ ..|+.|-. .|.+.          |.+..
T Consensus        83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~n  159 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISN  159 (1096)
T ss_pred             HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhh-hccHHHHHHHHHHhcccccc
Confidence            445555555443322222 55566778999999999987531  111110 12222211 11110          11110


Q ss_pred             CcCCCCCccEEEccCCcccccCCccccCcccceeEEeccccccCCCcccccCCcccceecCCCCcccccccc-cccCCCC
Q 002679          581 EIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPR-SLGNLVK  659 (893)
Q Consensus       581 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~  659 (893)
                      ++ ....|.+.+.+.|.+. .....+.-++.|+.|+|++|+++...  .+..++.|+.|||+.|.+.. +|. ....|. 
T Consensus       160 s~-~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~-  233 (1096)
T KOG1859|consen  160 SP-VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK-  233 (1096)
T ss_pred             ch-hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcc-ccccchhhhh-
Confidence            00 1234666777777775 44456666777888888888876554  56678888888888888773 332 223344 


Q ss_pred             CCeeecccCcCCcccchhhhhccCccccccccccCCCccc-ccccCCcccceeeCCCCcCCC
Q 002679          660 LHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIP-SQICNMRSLEMLNLSHNNLSD  720 (893)
Q Consensus       660 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~  720 (893)
                      |..|.+++|.++..  ..+.++.+|+.||+++|-|.+.-. .-+..+.+|..|+|.+|++--
T Consensus       234 L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  234 LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            88888888877543  456778888888888887766421 234566778888888887753

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.21  E-value=1.1e-07  Score=82.95  Aligned_cols=115  Identities=20%  Similarity=0.210  Sum_probs=57.8

Q ss_pred             CCcccceecCCCCcccccccccccCCCCCCeeecccCcCCcccchhhhhccCccccccccccCCCcccccccCCccccee
Q 002679          632 SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEML  711 (893)
Q Consensus       632 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  711 (893)
                      ....|+..+|++|.+...-+..-...+.++.|+|++|.+ ..+|.++..++.|+.|+++.|.+.. .|..+..+.++-+|
T Consensus        51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~nei-sdvPeE~Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~L  128 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEI-SDVPEELAAMPALRSLNLRFNPLNA-EPRVIAPLIKLDML  128 (177)
T ss_pred             CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhh-hhchHHHhhhHHhhhcccccCcccc-chHHHHHHHhHHHh
Confidence            334455555555555532222222334556666666665 3445556666666666666666633 33344446666666


Q ss_pred             eCCCCcCCCCCchhhhcCCCCCEEEccCCcccccCCCC
Q 002679          712 NLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS  749 (893)
Q Consensus       712 ~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ip~~  749 (893)
                      |..+|.+..+.-+ +-.-+.....++.++++.+.+|-+
T Consensus       129 ds~~na~~eid~d-l~~s~~~al~~lgnepl~~~~~~k  165 (177)
T KOG4579|consen  129 DSPENARAEIDVD-LFYSSLPALIKLGNEPLGDETKKK  165 (177)
T ss_pred             cCCCCccccCcHH-HhccccHHHHHhcCCcccccCccc
Confidence            6666655543322 211122333345566666666544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=2e-08  Score=98.84  Aligned_cols=178  Identities=22%  Similarity=0.209  Sum_probs=79.6

Q ss_pred             CCCEEeCCCCCCCCC-CCccccCCCCCCeecCCCccCCCCCCCCCCCCCCCCEEeCCCcc-CCCC-CCcccCCCCCCCEE
Q 002679          132 KLKYLDLSSNSFSGT-IPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQ-LSGP-IPHEVGGLSSLNEL  208 (893)
Q Consensus       132 ~L~~L~Ls~n~~~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~-~p~~~~~l~~L~~L  208 (893)
                      +|++||||...++.. +-.-++.|.+|+.|.|.++++...+-..+++-.+|+.|+++.+. ++.. ..-.+.+|+.|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            466666666555421 11223455666666666666655555555555666666555543 1110 00123344444444


Q ss_pred             EccCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCCCC---CCCCCcCCCCCCCCEEEeecC
Q 002679          209 ALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLC---GSIPLFLGNLTNLDTLYLRNN  285 (893)
Q Consensus       209 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~---~~~p~~l~~l~~L~~L~L~~n  285 (893)
                      +++++.+....-..+-                    ..+  -++|+.|+++++.-.   ..+..-...+++|..|||++|
T Consensus       266 NlsWc~l~~~~Vtv~V--------------------~hi--se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~  323 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAV--------------------AHI--SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS  323 (419)
T ss_pred             CchHhhccchhhhHHH--------------------hhh--chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc
Confidence            4444443322111000                    000  134444555443211   001111224555666666554


Q ss_pred             C-CCCCCCccccCCCCCCeeecCCCcCCCCCCCC---CCCCCCCCEEEccCC
Q 002679          286 S-FSSSIPSEIGNLKSLSILELGENRLNGSIPLS---LGNLTNLDTLYLYTN  333 (893)
Q Consensus       286 ~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~---~~~l~~L~~L~L~~n  333 (893)
                      . ++...-..|.+++.|++|.++.|..  .+|..   +...|.|.+|++.++
T Consensus       324 v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  324 VMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             cccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            3 2222223345556666666665543  33432   344566677766554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=2.1e-08  Score=98.68  Aligned_cols=106  Identities=25%  Similarity=0.196  Sum_probs=77.1

Q ss_pred             CCCEEECCCCCCCcc-CCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCeecCCCcc-CCCC-CCCCCCCCCCCCEE
Q 002679          108 HLAYLDLQVNQIFGI-IPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQ-FSGR-IPPQIGHLSYIEAL  184 (893)
Q Consensus       108 ~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L  184 (893)
                      .|++|||++..++.. +-..++.|.+|+.|.|.++++.+.+-..+.+-.+|+.|+|+.+. ++.. .---+.+|+.|+.|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            599999999988753 33456789999999999999999998899999999999999875 2211 11125789999999


Q ss_pred             eCCCccCCCCCCcc-cCC-CCCCCEEEccCC
Q 002679          185 HLFKNQLSGPIPHE-VGG-LSSLNELALTSN  213 (893)
Q Consensus       185 ~L~~n~l~~~~p~~-~~~-l~~L~~L~L~~n  213 (893)
                      ++++|.+....-.. +.. -++|+.|++++.
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~  296 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGY  296 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence            99999876543211 111 134555555553

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.01  E-value=6e-07  Score=88.65  Aligned_cols=86  Identities=28%  Similarity=0.300  Sum_probs=57.4

Q ss_pred             CCCCCCEEECCCCCCCcc--CCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCeecCCCccCCCC-CCCCCCCCCCC
Q 002679          105 SFPHLAYLDLQVNQIFGI--IPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGR-IPPQIGHLSYI  181 (893)
Q Consensus       105 ~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L  181 (893)
                      ..++++.+||.+|.++..  +..-+.++++|++|+|+.|.+...|-..-..+.+|++|-|.+..+.-. ....+..++.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            457888888888888764  444567888888888888887643321113556788888877766422 22345666777


Q ss_pred             CEEeCCCcc
Q 002679          182 EALHLFKNQ  190 (893)
Q Consensus       182 ~~L~L~~n~  190 (893)
                      +.|+++.|.
T Consensus       149 telHmS~N~  157 (418)
T KOG2982|consen  149 TELHMSDNS  157 (418)
T ss_pred             hhhhhccch
Confidence            777777663

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.97  E-value=4.5e-07  Score=88.33  Aligned_cols=87  Identities=25%  Similarity=0.324  Sum_probs=49.2

Q ss_pred             CCCCCCEEECCCCCCCcc----CCccccCCCCCCEEeCCCCCCCCC----CC-------ccccCCCCCCeecCCCccCCC
Q 002679          105 SFPHLAYLDLQVNQIFGI----IPPQIGNISKLKYLDLSSNSFSGT----IP-------PQIGNLSMLKFLYLSANQFSG  169 (893)
Q Consensus       105 ~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~----~p-------~~l~~l~~L~~L~L~~n~l~~  169 (893)
                      .+..++.+|||+|.|...    +...+.+-.+|++.++|.- ++|.    +|       .++-+|++|+..+||.|.+..
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            355666666666666433    3334445566666666643 2221    22       234566777777777777665


Q ss_pred             CCCCC----CCCCCCCCEEeCCCccCC
Q 002679          170 RIPPQ----IGHLSYIEALHLFKNQLS  192 (893)
Q Consensus       170 ~~p~~----l~~l~~L~~L~L~~n~l~  192 (893)
                      ..|+.    +++-+.|++|.+++|.+.
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCC
Confidence            55543    345566777777666543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.92  E-value=1.3e-06  Score=76.33  Aligned_cols=137  Identities=25%  Similarity=0.299  Sum_probs=85.4

Q ss_pred             ccEEEccCCcccccCCc---cccCcccceeEEeccccccCCCcccccCCcccceecCCCCcccccccccccCCCCCCeee
Q 002679          588 LHVIDLSANHIIGKIPS---EIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLN  664 (893)
Q Consensus       588 L~~L~Ls~n~l~~~~p~---~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  664 (893)
                      +..+||+.|++. .+++   .+.....|+..+|++|.+....+..-...+.++.|++++|.++ .+|..+..++.|+.|+
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence            344556666553 2222   2333455666677777766554444445567788888888887 4677788888888888


Q ss_pred             cccCcCCcccchhhhhccCccccccccccCCCcccccccCCcccceeeCCCCcCCCCCchhhhc
Q 002679          665 LSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEE  728 (893)
Q Consensus       665 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  728 (893)
                      ++.|.+... |..+..+.+|-.||..+|.+.. ||..+-.-+..-..++.++.+.+.-+..++.
T Consensus       107 l~~N~l~~~-p~vi~~L~~l~~Lds~~na~~e-id~dl~~s~~~al~~lgnepl~~~~~~klqa  168 (177)
T KOG4579|consen  107 LRFNPLNAE-PRVIAPLIKLDMLDSPENARAE-IDVDLFYSSLPALIKLGNEPLGDETKKKLQA  168 (177)
T ss_pred             cccCccccc-hHHHHHHHhHHHhcCCCCcccc-CcHHHhccccHHHHHhcCCcccccCcccccc
Confidence            888887543 4555558888888888887743 3333322233334456778887776655543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.88  E-value=1e-06  Score=87.13  Aligned_cols=63  Identities=17%  Similarity=0.237  Sum_probs=30.3

Q ss_pred             CCCCeEEccCCcCCCC-cccccCCCcccceEecccccCCCC-CCccccccccCceeccCCccccc
Q 002679          347 KSLSGLELADNELSSS-IPHYLGNLTNLAAFYLYKNSLSGS-IPSEIGNLKSLSNLDLSENKLSG  409 (893)
Q Consensus       347 ~~L~~L~ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~  409 (893)
                      +++..+-+..|.+... -...+..+|.+..|+|+.+++... --+++.++++|..|.++++.+.+
T Consensus       199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            4455555555544332 112334445555555655555421 11234555666666666665543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.78  E-value=1.7e-06  Score=84.35  Aligned_cols=138  Identities=23%  Similarity=0.211  Sum_probs=70.4

Q ss_pred             ccccccCceeccCCccccccCCcc----ccCCCccceeecccccccccCChh-------------hhcccccccccCCCC
Q 002679          391 IGNLKSLSNLDLSENKLSGSIPHS----LGNLTNLAILYLHSNTLLGSIPRE-------------IGNLKSLFELQLGDN  453 (893)
Q Consensus       391 l~~l~~L~~L~Ls~n~l~~~~~~~----l~~l~~L~~L~L~~n~l~~~~~~~-------------~~~~~~L~~L~Ls~n  453 (893)
                      +.+|++|+..+||+|-+....|+.    ++.-+.|++|.+++|.+...-...             ..+-|.|+......|
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            455666666677666665554433    334566777777776654221111             123455666666666


Q ss_pred             CcCCCcc----ccCCCCCccceEEcccCcCccc-----CCccccCCCCCCEEecCCCcCcCCCC-----CcCCCCCCCEE
Q 002679          454 KLSNSIS----HSLGNLTHMTLLALYDNALSGV-----IPEELGNLVKLTMLTLSDNQLQGSIP-----NLRNLTNLIRL  519 (893)
Q Consensus       454 ~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~l~~~~~L~~L  519 (893)
                      ++..-..    ..+..-..|+.+.+..|.|.-.     +-..+..+.+|+.|||.+|.++-.-.     .+...+.|+.|
T Consensus       168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL  247 (388)
T COG5238         168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL  247 (388)
T ss_pred             hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence            6543111    1122224566666666655421     11123345666666666666553211     23334445666


Q ss_pred             EcCCCcCCC
Q 002679          520 RLNRNHLTC  528 (893)
Q Consensus       520 ~l~~n~l~~  528 (893)
                      .+..|-++.
T Consensus       248 ~lnDClls~  256 (388)
T COG5238         248 RLNDCLLSN  256 (388)
T ss_pred             cccchhhcc
Confidence            666655543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.69  E-value=2.7e-05  Score=55.29  Aligned_cols=35  Identities=49%  Similarity=0.756  Sum_probs=15.2

Q ss_pred             ccccccccccCCCcccccccCCcccceeeCCCCcCC
Q 002679          684 LSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLS  719 (893)
Q Consensus       684 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  719 (893)
                      |++|++++|+|+. +|..++++++|++|++++|+++
T Consensus         3 L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            4444444444432 2333444555555555555444

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.66  E-value=8.2e-05  Score=79.73  Aligned_cols=137  Identities=19%  Similarity=0.213  Sum_probs=76.4

Q ss_pred             cCCCCCccEEEccCCccCCCCCCCcCCCCCccEEEccCCcccccCCccccCcccceeEEeccccccCCCcccccCCcccc
Q 002679          558 WGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLE  637 (893)
Q Consensus       558 ~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  637 (893)
                      +..|.+++.|++++|.++ .+|.   -..+|+.|+++++.-...+|..+.  ++|++|++++|.....+|      .+|+
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP------~sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP------ESVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc------cccc
Confidence            445688888999888665 3352   234688888887654445665442  578888888873333333      3466


Q ss_pred             eecCCCCccc--ccccccccCCCCCCeeecccCcCC--cccchhhhhccCccccccccccCCCcccccccCCcccceeeC
Q 002679          638 YLDLSSNRLS--NSIPRSLGNLVKLHYLNLSTNQFI--QEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNL  713 (893)
Q Consensus       638 ~L~Ls~n~l~--~~~p~~l~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  713 (893)
                      .|+++.+...  +.+|      ++|+.|.+.+++..  ..+|..  -..+|++|++++|.... .|..+.  .+|++|++
T Consensus       116 ~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~l  184 (426)
T PRK15386        116 SLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII-LPEKLP--ESLQSITL  184 (426)
T ss_pred             eEEeCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCCccc-Cccccc--ccCcEEEe
Confidence            6666655442  1223      24556666433211  111110  11467777777776542 333332  46777777


Q ss_pred             CCCc
Q 002679          714 SHNN  717 (893)
Q Consensus       714 s~N~  717 (893)
                      +.|.
T Consensus       185 s~n~  188 (426)
T PRK15386        185 HIEQ  188 (426)
T ss_pred             cccc
Confidence            7663

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.60  E-value=4.2e-05  Score=54.28  Aligned_cols=36  Identities=44%  Similarity=0.707  Sum_probs=16.0

Q ss_pred             CCCEEECCCCCCCccCCccccCCCCCCEEeCCCCCCC
Q 002679          108 HLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFS  144 (893)
Q Consensus       108 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~  144 (893)
                      +|++|++++|+|+. +|..+++|++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            44555555555543 2333445555555555555444

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.57  E-value=0.00023  Score=76.40  Aligned_cols=35  Identities=11%  Similarity=0.155  Sum_probs=18.9

Q ss_pred             ccCCCCCCEEecCCCcCcCCCCCcCCCCCCCEEEcCCC
Q 002679          487 LGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRN  524 (893)
Q Consensus       487 ~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n  524 (893)
                      +..+..++.|++++|.+... |.  -.++|+.|.+++|
T Consensus        48 ~~~~~~l~~L~Is~c~L~sL-P~--LP~sLtsL~Lsnc   82 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESL-PV--LPNELTEITIENC   82 (426)
T ss_pred             HHHhcCCCEEEeCCCCCccc-CC--CCCCCcEEEccCC
Confidence            34456677777777755432 21  1234666666554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.33  E-value=0.00027  Score=66.71  Aligned_cols=105  Identities=25%  Similarity=0.234  Sum_probs=72.9

Q ss_pred             CcccceecCCCCcccccccccccCCCCCCeeecccCcCCcccchhhhhccCccccccccccCCCcc-cccccCCccccee
Q 002679          633 LIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEI-PSQICNMRSLEML  711 (893)
Q Consensus       633 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L  711 (893)
                      ..+...+||++|.+...  ..|..++.|..|.|++|+|+.+-|.--.-++.|++|.|.+|.|.... -..+..+|.|++|
T Consensus        41 ~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            44566777888777643  45777788888888888888777776677777888888888775431 1335677888888


Q ss_pred             eCCCCcCCCCCc---hhhhcCCCCCEEEccC
Q 002679          712 NLSHNNLSDFIP---RCFEEMNGLLYIDISY  739 (893)
Q Consensus       712 ~Ls~N~l~~~~p---~~l~~l~~L~~l~ls~  739 (893)
                      .+-+|+.+..--   ..+..+++|+.||++.
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhh
Confidence            888887765421   2345567778887764

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.26  E-value=0.00043  Score=63.39  Aligned_cols=101  Identities=15%  Similarity=0.252  Sum_probs=33.8

Q ss_pred             cccccCCcccceecCCCCcccccccccccCCCCCCeeecccCcCCcccchhhhhccCccccccccccCCCcccccccCCc
Q 002679          627 PSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMR  706 (893)
Q Consensus       627 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  706 (893)
                      ...|.++++|+.+++.++ +......+|.++++++.+++.+ .+.......|..++.|+.+++..+ +.......|.++ 
T Consensus        28 ~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-  103 (129)
T PF13306_consen   28 ENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-  103 (129)
T ss_dssp             TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--
T ss_pred             hhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-
Confidence            333444444444444442 3333333444444455555543 222223333444445555555443 333333444444 


Q ss_pred             ccceeeCCCCcCCCCCchhhhcCCCC
Q 002679          707 SLEMLNLSHNNLSDFIPRCFEEMNGL  732 (893)
Q Consensus       707 ~L~~L~Ls~N~l~~~~p~~l~~l~~L  732 (893)
                      .|+.+.+.. .+.......|.++++|
T Consensus       104 ~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen  104 NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             T--EEE-TT-B-SS----GGG-----
T ss_pred             CceEEEECC-CccEECCccccccccC
Confidence            555555543 3444444445444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.25  E-value=0.0004  Score=63.58  Aligned_cols=86  Identities=12%  Similarity=0.152  Sum_probs=39.1

Q ss_pred             CccCCCCCCCCEEECCCCCCCccCCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCeecCCCccCCCCCCCCCCCCC
Q 002679          100 DFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLS  179 (893)
Q Consensus       100 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  179 (893)
                      +.+|.++++|+.+.+.. .+..+-..+|.++++|+.+++..+ +...-...|.++.+|+.+.+.. .+.......|.+++
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence            35666666777777663 455555556666666777766654 4433334556665666666654 22222223444455


Q ss_pred             CCCEEeCCC
Q 002679          180 YIEALHLFK  188 (893)
Q Consensus       180 ~L~~L~L~~  188 (893)
                      +|+.+++..
T Consensus        82 ~l~~i~~~~   90 (129)
T PF13306_consen   82 NLKNIDIPS   90 (129)
T ss_dssp             TECEEEETT
T ss_pred             cccccccCc
Confidence            555555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.17  E-value=0.00012  Score=85.58  Aligned_cols=134  Identities=19%  Similarity=0.223  Sum_probs=69.6

Q ss_pred             CCCCEEeCCCCCCC-CCCCcccc-CCCCCCeecCCCccCCCC-CCCCCCCCCCCCEEeCCCccCCCCCCcccCCCCCCCE
Q 002679          131 SKLKYLDLSSNSFS-GTIPPQIG-NLSMLKFLYLSANQFSGR-IPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNE  207 (893)
Q Consensus       131 ~~L~~L~Ls~n~~~-~~~p~~l~-~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  207 (893)
                      .+|++||+++.... ..=|..++ .||+|+.|.+++-.+... .-....++++|+.||+|+++++..  ..++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            45666666554321 11122232 356666666655443211 112234556666666666665544  45556666666


Q ss_pred             EEccCCCCCC-CCCCCCCCCCCCCEEEccCCcCCCCC--C----ccccCCCCCCEEEccCCCCCCC
Q 002679          208 LALTSNFLKG-SIPPSLGNLTNLAILYLHNNSLSGSI--P----SEIGNLKSLSSLALGNNKLCGS  266 (893)
Q Consensus       208 L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--~----~~l~~l~~L~~L~Ls~n~l~~~  266 (893)
                      |.+.+=.+.. ..-..+.++++|++||+|........  .    +.-..+|+|+.||.|++.+.+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            6655544432 12234556777777777765433211  0    1112478899999998777643

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.11  E-value=0.00067  Score=64.07  Aligned_cols=59  Identities=24%  Similarity=0.290  Sum_probs=34.8

Q ss_pred             CCCEEECCCCCCCccCCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCeecCCCccCC
Q 002679          108 HLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFS  168 (893)
Q Consensus       108 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~  168 (893)
                      ....+||++|.+...  ..|..+++|.+|.|++|+|+.+-|.--.-+++|+.|.|.+|++.
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence            445566666666443  34556666677777777666444433344556666666666554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.11  E-value=0.00018  Score=84.02  Aligned_cols=112  Identities=24%  Similarity=0.285  Sum_probs=53.2

Q ss_pred             cccceeEEeccccccCC-CcccccCCcccceecCCCCcccccccccccCCCCCCeeecccCcCCc-ccchhhhhccCccc
Q 002679          609 LSSLIKLILRRNQLFGQ-LPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQ-EIPIKLEKLIHLSE  686 (893)
Q Consensus       609 l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~  686 (893)
                      +|+|+.|.+++=.+... ....+.++++|..||+|+.+++..  ..++++++|+.|.+.+=.+.. ..-..+.+|++|++
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            44444444444333211 122233555555555555555533  445555555555555544432 22334455566666


Q ss_pred             cccccccCCCcc--c----ccccCCcccceeeCCCCcCCCCC
Q 002679          687 LDLSHNFLGKEI--P----SQICNMRSLEMLNLSHNNLSDFI  722 (893)
Q Consensus       687 L~Ls~N~l~~~~--p----~~~~~l~~L~~L~Ls~N~l~~~~  722 (893)
                      ||+|........  .    +.-..+|.|+.||.|+..+.+.+
T Consensus       225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence            666655443221  1    11224566666666665555443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.91  E-value=0.00043  Score=68.36  Aligned_cols=82  Identities=26%  Similarity=0.348  Sum_probs=41.3

Q ss_pred             CCCCEEECCCCCCCccCCccccCCCCCCEEeCCCC--CCCCCCCccccCCCCCCeecCCCccCCCCCCCC---CCCCCCC
Q 002679          107 PHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSN--SFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQ---IGHLSYI  181 (893)
Q Consensus       107 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n--~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L  181 (893)
                      ..|+.|++.+..++..  ..|..|++|++|.+|.|  .+++.++.-..++++|++|++++|++.-  +..   +..+.+|
T Consensus        43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL  118 (260)
T KOG2739|consen   43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENL  118 (260)
T ss_pred             cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcch
Confidence            3344444444433322  23445566666666666  4444444444555666666666666541  222   3344455


Q ss_pred             CEEeCCCccCC
Q 002679          182 EALHLFKNQLS  192 (893)
Q Consensus       182 ~~L~L~~n~l~  192 (893)
                      ..|++.+|..+
T Consensus       119 ~~Ldl~n~~~~  129 (260)
T KOG2739|consen  119 KSLDLFNCSVT  129 (260)
T ss_pred             hhhhcccCCcc
Confidence            55555555444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.79  E-value=0.00071  Score=66.86  Aligned_cols=102  Identities=25%  Similarity=0.342  Sum_probs=60.1

Q ss_pred             CCcccceecCCCCcccccccccccCCCCCCeeecccC--cCCcccchhhhhccCccccccccccCCCccccc---ccCCc
Q 002679          632 SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTN--QFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQ---ICNMR  706 (893)
Q Consensus       632 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~  706 (893)
                      .+..|+.|.+.+..++..  ..|..+++|+.|++|.|  ++.+..+.....+++|++|++++|++..  +++   +..+.
T Consensus        41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~  116 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELE  116 (260)
T ss_pred             cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhc
Confidence            444555555555555432  34556667777777777  5566555555666777777777777753  222   34455


Q ss_pred             ccceeeCCCCcCCCCCc---hhhhcCCCCCEEEc
Q 002679          707 SLEMLNLSHNNLSDFIP---RCFEEMNGLLYIDI  737 (893)
Q Consensus       707 ~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~l~l  737 (893)
                      +|.+||+.+|.-+..-.   ..|.-+++|+++|-
T Consensus       117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             chhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            66677777776665421   23444556666543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.65  E-value=0.00031  Score=69.29  Aligned_cols=100  Identities=23%  Similarity=0.221  Sum_probs=61.2

Q ss_pred             CcccceecCCCCcccccccccccCCCCCCeeecccCcCCcccchhhhhccCccccccccccCCCccc-ccccCCccccee
Q 002679          633 LIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIP-SQICNMRSLEML  711 (893)
Q Consensus       633 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L  711 (893)
                      +.+.+.|++.+|.+.++  .-...++.|+.|.||-|+|+..-|  +..++.|++|+|..|.|..... .-+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            34445555555555543  233456666777777776655433  5567777777777777654422 345677888888


Q ss_pred             eCCCCcCCCCCch-----hhhcCCCCCEEE
Q 002679          712 NLSHNNLSDFIPR-----CFEEMNGLLYID  736 (893)
Q Consensus       712 ~Ls~N~l~~~~p~-----~l~~l~~L~~l~  736 (893)
                      +|..|+-.|.-+.     .+.-+++|++||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            8888887776553     344566777665

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.40  E-value=0.00015  Score=75.79  Aligned_cols=82  Identities=18%  Similarity=0.072  Sum_probs=36.1

Q ss_pred             CCCEEEccCCCCccccC--CCCCCCCCCCeEEccCCcC-CCCcc-cccCCCcccceEecccc-cCCCCCCc-cccccccC
Q 002679          324 NLDTLYLYTNSLSGSIP--SEIGNLKSLSGLELADNEL-SSSIP-HYLGNLTNLAAFYLYKN-SLSGSIPS-EIGNLKSL  397 (893)
Q Consensus       324 ~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~ls~n~l-~~~~~-~~l~~l~~L~~L~L~~n-~l~~~~~~-~l~~l~~L  397 (893)
                      .|+.|.+.++.-.+.-+  ....+++++++|++.++.. +...- ..-..+++|+++++..| .++...-. -...|++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            45666666654433211  1224566666666666542 11111 11123555666655552 22211111 12345555


Q ss_pred             ceeccCCc
Q 002679          398 SNLDLSEN  405 (893)
Q Consensus       398 ~~L~Ls~n  405 (893)
                      ++++++.+
T Consensus       219 ~~lNlSwc  226 (483)
T KOG4341|consen  219 KYLNLSWC  226 (483)
T ss_pred             HHhhhccC
Confidence            55555555

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.19  E-value=0.0002  Score=74.77  Aligned_cols=38  Identities=29%  Similarity=0.246  Sum_probs=24.8

Q ss_pred             CCcccceecCCCCcccc-cccccccCCCCCCeeecccCc
Q 002679          632 SLIQLEYLDLSSNRLSN-SIPRSLGNLVKLHYLNLSTNQ  669 (893)
Q Consensus       632 ~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~N~  669 (893)
                      .+..|..+.|++++... ..-..+..+++|+.+++-.++
T Consensus       399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             cccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            45667777777776532 233456677788888777665

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.00  E-value=0.00055  Score=67.61  Aligned_cols=100  Identities=25%  Similarity=0.142  Sum_probs=69.9

Q ss_pred             cccceeEEeccccccCCCcccccCCcccceecCCCCcccccccccccCCCCCCeeecccCcCCcccc-hhhhhccCcccc
Q 002679          609 LSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIP-IKLEKLIHLSEL  687 (893)
Q Consensus       609 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L  687 (893)
                      +.+.++|++.+|.+..+.  .+..++.|++|.||-|+|+..-  .+..|++|+.|+|..|.|...-. ..+.++++|++|
T Consensus        18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            345566777777665442  2347788888888888888653  47788889999999888755332 336788899999


Q ss_pred             ccccccCCCccccc-----ccCCcccceee
Q 002679          688 DLSHNFLGKEIPSQ-----ICNMRSLEMLN  712 (893)
Q Consensus       688 ~Ls~N~l~~~~p~~-----~~~l~~L~~L~  712 (893)
                      .|..|.-.|.-+..     +.-+|+|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            99999877765432     34566666664

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.82  E-value=0.0019  Score=74.31  Aligned_cols=13  Identities=31%  Similarity=0.350  Sum_probs=6.5

Q ss_pred             CCCCCeEEccCCc
Q 002679          346 LKSLSGLELADNE  358 (893)
Q Consensus       346 l~~L~~L~ls~n~  358 (893)
                      ++.|++|+++.+.
T Consensus       294 ~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  294 CPSLRELDLSGCH  306 (482)
T ss_pred             cCcccEEeeecCc
Confidence            4445555555443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.73  E-value=0.012  Score=34.67  Aligned_cols=10  Identities=60%  Similarity=0.524  Sum_probs=3.8

Q ss_pred             cccccccccC
Q 002679          685 SELDLSHNFL  694 (893)
Q Consensus       685 ~~L~Ls~N~l  694 (893)
                      ++|||++|++
T Consensus         3 ~~Ldls~n~l   12 (22)
T PF00560_consen    3 EYLDLSGNNL   12 (22)
T ss_dssp             SEEEETSSEE
T ss_pred             cEEECCCCcC
Confidence            3333333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.73  E-value=0.01  Score=34.89  Aligned_cols=21  Identities=52%  Similarity=0.781  Sum_probs=13.1

Q ss_pred             ccceeeCCCCcCCCCCchhhhc
Q 002679          707 SLEMLNLSHNNLSDFIPRCFEE  728 (893)
Q Consensus       707 ~L~~L~Ls~N~l~~~~p~~l~~  728 (893)
                      +|++|||++|+++ .+|..|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3667777777777 55555543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.55  E-value=0.0024  Score=73.53  Aligned_cols=62  Identities=16%  Similarity=0.108  Sum_probs=29.4

Q ss_pred             CCCCCEEEccCCC-CccccCCCCC-CCCCCCeEEccCCc-CCCC-cccccCCCcccceEecccccC
Q 002679          322 LTNLDTLYLYTNS-LSGSIPSEIG-NLKSLSGLELADNE-LSSS-IPHYLGNLTNLAAFYLYKNSL  383 (893)
Q Consensus       322 l~~L~~L~L~~n~-l~~~~~~~l~-~l~~L~~L~ls~n~-l~~~-~~~~l~~l~~L~~L~L~~n~l  383 (893)
                      +++|+.|+++.+. ++...-..+. .+++|+.|.+.++. ++.. +......++.|++|+++++..
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            4555556655554 3322211222 25666666655554 3332 112233455666666665543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.19  E-value=0.001  Score=74.44  Aligned_cols=132  Identities=28%  Similarity=0.267  Sum_probs=70.1

Q ss_pred             ceeEEeccccccCC----CcccccCCcccceecCCCCcccc----ccccccc----CCCCCCeeecccCcCCcccc----
Q 002679          612 LIKLILRRNQLFGQ----LPSELGSLIQLEYLDLSSNRLSN----SIPRSLG----NLVKLHYLNLSTNQFIQEIP----  675 (893)
Q Consensus       612 L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~----~~p~~l~----~l~~L~~L~Ls~N~l~~~~p----  675 (893)
                      ++.|++..|.+++.    +.+.+.....++.++++.|.+..    .++..+.    ...+++.|++++|.++...-    
T Consensus       146 l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~  225 (478)
T KOG4308|consen  146 LQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLD  225 (478)
T ss_pred             HHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHH
Confidence            34444444444332    23334445556666666665421    1222222    35566777777776653221    


Q ss_pred             hhhhhccC-ccccccccccCCCc----ccccccCC-cccceeeCCCCcCCCCCc----hhhhcCCCCCEEEccCCccc
Q 002679          676 IKLEKLIH-LSELDLSHNFLGKE----IPSQICNM-RSLEMLNLSHNNLSDFIP----RCFEEMNGLLYIDISYNELH  743 (893)
Q Consensus       676 ~~l~~l~~-L~~L~Ls~N~l~~~----~p~~~~~l-~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~l~ls~N~l~  743 (893)
                      ..+...++ +..|++.+|.+.+.    ....+..+ ..++.++++.|.++..-.    ..+..+..++.+.+++|++.
T Consensus       226 ~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  226 EVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            22334444 56677777777543    23334444 566777777777776533    33444566777777777654

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.40  E-value=0.0013  Score=73.65  Aligned_cols=187  Identities=27%  Similarity=0.284  Sum_probs=103.6

Q ss_pred             CCCEEEcCCCcCCCCCCc----cccCCCCCcEEeccCCcccccCCc----CcCCC-CCccEEEccCCccCCCCCCCcCCC
Q 002679          515 NLIRLRLNRNHLTCNISE----SFGIHPKLTFIDLSHNNFYGQISS----DWGKC-PNLGTFDVSVNNIIGSLPPEIGDS  585 (893)
Q Consensus       515 ~L~~L~l~~n~l~~~~~~----~~~~~~~L~~L~ls~n~l~~~~~~----~~~~~-~~L~~L~ls~n~l~~~~p~~l~~l  585 (893)
                      .+..+.+.+|.+......    .+...+.|+.|+++.|.+......    .+... ..+++|++..|.+++.--      
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~------  161 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGA------  161 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccch------
Confidence            367777777777654332    234456666677777666522111    11111 233344444444332211      


Q ss_pred             CCccEEEccCCcccccCCccccCcccceeEEeccccccC----CCcc----cccCCcccceecCCCCccccc----cccc
Q 002679          586 SQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFG----QLPS----ELGSLIQLEYLDLSSNRLSNS----IPRS  653 (893)
Q Consensus       586 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~----~~~~----~~~~l~~L~~L~Ls~n~l~~~----~p~~  653 (893)
                                    ..+...+.....++.++++.|.+..    .++.    .+....++++|++++|.++..    +-..
T Consensus       162 --------------~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~  227 (478)
T KOG4308|consen  162 --------------APLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEV  227 (478)
T ss_pred             --------------HHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHH
Confidence                          1222333334555555555555421    1122    233466778888888776521    1123


Q ss_pred             ccCCCC-CCeeecccCcCCcc----cchhhhhc-cCccccccccccCCCcc----cccccCCcccceeeCCCCcCCCC
Q 002679          654 LGNLVK-LHYLNLSTNQFIQE----IPIKLEKL-IHLSELDLSHNFLGKEI----PSQICNMRSLEMLNLSHNNLSDF  721 (893)
Q Consensus       654 l~~l~~-L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~  721 (893)
                      +...++ +..|++.+|.+...    ....+..+ ..+++++++.|.++...    ...+..++.++.|.+++|.+...
T Consensus       228 l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~  305 (478)
T KOG4308|consen  228 LASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY  305 (478)
T ss_pred             HhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence            444455 66788888887543    22334444 56788999999887653    44556778899999999988765

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.32  E-value=0.0062  Score=58.82  Aligned_cols=88  Identities=19%  Similarity=0.204  Sum_probs=53.9

Q ss_pred             ccCCCCCCCCEEECCCCCCCccCCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCeecCCCccCCCCCCCCCCCCCC
Q 002679          101 FSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSY  180 (893)
Q Consensus       101 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  180 (893)
                      .++..+...+.||++.|.+.. +-..|+-++.|..||++.|.+. ..|..++.+..++.+++..|..+ ..|.+++.++.
T Consensus        36 ~ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~  112 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH  112 (326)
T ss_pred             hhhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence            455566666666666665533 2234555666666677766665 55666666666666666666555 56666666666


Q ss_pred             CCEEeCCCccC
Q 002679          181 IEALHLFKNQL  191 (893)
Q Consensus       181 L~~L~L~~n~l  191 (893)
                      ++++++..+.+
T Consensus       113 ~k~~e~k~~~~  123 (326)
T KOG0473|consen  113 PKKNEQKKTEF  123 (326)
T ss_pred             cchhhhccCcc
Confidence            66666555543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.28  E-value=0.018  Score=55.75  Aligned_cols=87  Identities=23%  Similarity=0.253  Sum_probs=60.5

Q ss_pred             ccCCcccceecCCCCcccccccccccCCCCCCeeecccCcCCcccchhhhhccCccccccccccCCCcccccccCCcccc
Q 002679          630 LGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLE  709 (893)
Q Consensus       630 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  709 (893)
                      +......+.||++.|++.. .-..|.-++.|+.||++.|++ ...|..++++..+..+++..|.. ...|.+++..+.++
T Consensus        38 i~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~-~~~~~d~~q~~e~~~~~~~~n~~-~~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQI-KFLPKDAKQQRETVNAASHKNNH-SQQPKSQKKEPHPK  114 (326)
T ss_pred             hhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhH-hhChhhHHHHHHHHHHHhhccch-hhCCccccccCCcc
Confidence            4455666777777777652 334566667777888887775 45677777777777777777776 45677777777777


Q ss_pred             eeeCCCCcCC
Q 002679          710 MLNLSHNNLS  719 (893)
Q Consensus       710 ~L~Ls~N~l~  719 (893)
                      ++++-.|.+.
T Consensus       115 ~~e~k~~~~~  124 (326)
T KOG0473|consen  115 KNEQKKTEFF  124 (326)
T ss_pred             hhhhccCcch
Confidence            7777777654

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=89.51  E-value=0.11  Score=56.69  Aligned_cols=52  Identities=19%  Similarity=0.188  Sum_probs=34.2

Q ss_pred             CccCHHHHHHHhcCCCcc-----cccchhhhh-------hhhhhhhHH----HHhcc----cccccccccCC
Q 002679          842 GKIVYEEIIRQRMVLMMS-----TALEKVDKE-------VYTKLIYLL----EKSLQ----SRNFIRHSQVR  893 (893)
Q Consensus       842 ~~lsy~dl~~aT~~f~~~-----~~l~~~~~~-------V~~~~~~~~----e~~~~----~~~f~rh~nlv  893 (893)
                      ..++|+|+.+||++|+..     |..+.+|++       ||+|....-    +++|.    ..+.+||+|||
T Consensus        63 ~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv  134 (361)
T KOG1187|consen   63 RSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLV  134 (361)
T ss_pred             ceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcc
Confidence            568999999999999976     444555544       444433221    22233    44668999998

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=88.53  E-value=0.25  Score=26.86  Aligned_cols=12  Identities=50%  Similarity=0.750  Sum_probs=4.0

Q ss_pred             CCCEEeCCCCCC
Q 002679          132 KLKYLDLSSNSF  143 (893)
Q Consensus       132 ~L~~L~Ls~n~~  143 (893)
                      +|+.|+|++|++
T Consensus         2 ~L~~L~l~~n~L   13 (17)
T PF13504_consen    2 NLRTLDLSNNRL   13 (17)
T ss_dssp             T-SEEEETSS--
T ss_pred             ccCEEECCCCCC
Confidence            344444444443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.19  E-value=0.37  Score=29.53  Aligned_cols=22  Identities=41%  Similarity=0.659  Sum_probs=14.0

Q ss_pred             CcccceeeCCCCcCCCCCchhh
Q 002679          705 MRSLEMLNLSHNNLSDFIPRCF  726 (893)
Q Consensus       705 l~~L~~L~Ls~N~l~~~~p~~l  726 (893)
                      +++|++|+|++|+|+...+..|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            3566777777777776655544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.19  E-value=0.37  Score=29.53  Aligned_cols=22  Identities=41%  Similarity=0.659  Sum_probs=14.0

Q ss_pred             CcccceeeCCCCcCCCCCchhh
Q 002679          705 MRSLEMLNLSHNNLSDFIPRCF  726 (893)
Q Consensus       705 l~~L~~L~Ls~N~l~~~~p~~l  726 (893)
                      +++|++|+|++|+|+...+..|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            3566777777777776655544

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=83.36  E-value=0.22  Score=29.91  Aligned_cols=14  Identities=50%  Similarity=0.833  Sum_probs=5.2

Q ss_pred             ccceeeCCCCcCCC
Q 002679          707 SLEMLNLSHNNLSD  720 (893)
Q Consensus       707 ~L~~L~Ls~N~l~~  720 (893)
                      +|++|+|++|++++
T Consensus         3 ~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    3 NLETLDLSNNQITD   16 (24)
T ss_dssp             T-SEEE-TSSBEHH
T ss_pred             CCCEEEccCCcCCH
Confidence            34444444444433

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=82.75  E-value=0.46  Score=28.45  Aligned_cols=15  Identities=40%  Similarity=0.494  Sum_probs=5.9

Q ss_pred             CCCCeeecccCcCCc
Q 002679          658 VKLHYLNLSTNQFIQ  672 (893)
Q Consensus       658 ~~L~~L~Ls~N~l~~  672 (893)
                      ++|+.|+|++|+++.
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            344444444444433

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=81.98  E-value=1.2  Score=27.24  Aligned_cols=14  Identities=43%  Similarity=0.536  Sum_probs=6.4

Q ss_pred             CCCeeecccCcCCc
Q 002679          659 KLHYLNLSTNQFIQ  672 (893)
Q Consensus       659 ~L~~L~Ls~N~l~~  672 (893)
                      +|+.|+|++|++..
T Consensus         3 ~L~~L~L~~N~l~~   16 (26)
T smart00370        3 NLRELDLSNNQLSS   16 (26)
T ss_pred             CCCEEECCCCcCCc
Confidence            44444444444433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=81.98  E-value=1.2  Score=27.24  Aligned_cols=14  Identities=43%  Similarity=0.536  Sum_probs=6.4

Q ss_pred             CCCeeecccCcCCc
Q 002679          659 KLHYLNLSTNQFIQ  672 (893)
Q Consensus       659 ~L~~L~Ls~N~l~~  672 (893)
                      +|+.|+|++|++..
T Consensus         3 ~L~~L~L~~N~l~~   16 (26)
T smart00369        3 NLRELDLSNNQLSS   16 (26)
T ss_pred             CCCEEECCCCcCCc
Confidence            44444444444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	893
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-54
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-32
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-54
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		8e-32
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-23
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		6e-18
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-15
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-13
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		3e-12
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		5e-07
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		4e-12
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		4e-07
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		7e-12
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		6e-06
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		8e-12
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		6e-07
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		9e-12
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		9e-06
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		2e-11
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		9e-06
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		2e-11
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		6e-06
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		2e-08
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		4e-04
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		2e-08
4fho_A	231	Crystal Structure Of An Internalin C2 (Inlc2) From		2e-08
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		3e-08
4fmz_A	347	Crystal Structure Of An Internalin (Inlf) From List		6e-08
4fmz_A	347	Crystal Structure Of An Internalin (Inlf) From List		2e-04
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		8e-08
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		9e-06
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		1e-05
1h6u_A	308	Internalin H: Crystal Structure Of Fused N-Terminal		2e-07
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		6e-07
2z7x_B	520	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		2e-06
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		2e-05
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		2e-05
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		2e-05
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		2e-05
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		5e-05
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		2e-04
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		1e-04
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		1e-04
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		2e-04
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		2e-04
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		2e-04
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		2e-04
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		2e-04
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		3e-04
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		3e-04
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		4e-04
3a79_B	562	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		4e-04
3a79_B	562	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		7e-04
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		5e-04
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		6e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		7e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  211 bits (536), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 233/775 (30%), Positives = 346/775 (44%), Gaps = 86/775 (11%)
Query: 36  EEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLT----N 91
            E+H L+ +K  L + +   LLP W+ N     +PC + G+ C    +V SI+L+    N
Sbjct: 12  REIHQLISFKDVLPDKN---LLPDWSSNK----NPCTFDGVTCRD-DKVTSIDLSSKPLN 63
Query: 92  VGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSG--TIPP 149
           VG           +     +L    + I G +       + L  LDLS NS SG  T   
Sbjct: 64  VGFSAVSSSLLSLTGLESLFL--SNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLT 120
Query: 150 QIGNLSMLKFLYLSAN--QFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVG-----GL 202
            +G+ S LKFL +S+N   F G++   +  L+ +E L L  N +SG   + VG     G 
Sbjct: 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGA--NVVGWVLSDGC 177
Query: 203 SSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNK 262
             L  LA++ N + G +   +    NL  L + +N+ S  IP  +G+  +L  L +  NK
Sbjct: 178 GELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK 234
Query: 263 LCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIP--LSXX 320
           L G     +   T L  L + +N F   IP     LKSL  L L EN+  G IP  LS  
Sbjct: 235 LSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLS-- 290
Query: 321 XXXXXXXXXXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYK 380
                                  G   +L+GL+L+ N    ++P + G+ + L +  L  
Sbjct: 291 -----------------------GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 381 NSLSGSIPSE-IGNLKSLSNLDLSENKLSGSIPHSLGNLT-NLAILYLHSNTLLGSI-PR 437
           N+ SG +P + +  ++ L  LDLS N+ SG +P SL NL+ +L  L L SN   G I P 
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 438 EIGNLK-SLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTML 496
              N K +L EL L +N  +  I  +L N + +  L L  N LSG IP  LG+L KL  L
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 497 TLSDNQLQGSIPXXXXXXXXXXXXXXXXH-LTCNISESFGIHPKLTFIDLSHNNFYGQIS 555
            L  N L+G IP                + LT  I         L +I LS+N   G+I 
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Query: 556 SDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGXXXXXXXX 615
              G+  NL    +S N+  G++P E+GD   L  +DL+ N   G IP+ +         
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 567
Query: 616 XXXXNQLF------GQLPSELGSLIQLEYLDLSS---NRLSNSIPRSLGNLV-------- 658
                + +      G      G+   LE+  + S   NRLS   P ++ + V        
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627
Query: 659 -----KLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNL 713
                 + +L++S N     IP ++  + +L  L+L HN +   IP ++ ++R L +L+L
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687
Query: 714 SHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCG 768
           S N L   IP+    +  L  ID+S N L GPIP    F          N GLCG
Sbjct: 688 SSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  136 bits (342), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 160/567 (28%), Positives = 259/567 (45%), Gaps = 51/567 (8%)
Query: 233 YLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLF--LGNLTNLDTLYLRNNSFSSS 290
           +L N+ ++GS+ S      SL+SL L  N L G +     LG+ + L  L + +N+    
Sbjct: 83  FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-- 139
Query: 291 IPSEI-GNLK--SLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIPSE-IGNL 346
            P ++ G LK  SL +L+L  N ++G+                      G + S+  G L
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSANSISGA-------------------NVVGWVLSDGCGEL 180
Query: 347 KSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENK 406
           K L+   ++ N++S  +   +    NL    +  N+ S  IP  +G+  +L +LD+S NK
Sbjct: 181 KHLA---ISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK 234
Query: 407 LSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSL-GN 465
           LSG    ++   T L +L + SN  +G IP     LKSL  L L +NK +  I   L G 
Sbjct: 235 LSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGA 292
Query: 466 LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXX--XXXXXXXXXXXX 523
              +T L L  N   G +P   G+   L  L LS N   G +P                 
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352
Query: 524 XHLTCNISESF-GIHPKLTFIDLSHNNFYGQISSDWGKCP--NLGTFDVSVNNIIGSLPP 580
              +  + ES   +   L  +DLS NNF G I  +  + P   L    +  N   G +PP
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Query: 581 EIGDSSQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLD 640
            + + S+L  + LS N++ G IPS +G            N L G++P EL  +  LE L 
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472
Query: 641 LSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPS 700
           L  N L+  IP  L N   L++++LS N+   EIP  + +L +L+ L LS+N     IP+
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Query: 701 QICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEAL 760
           ++ + RSL  L+L+ N  +  IP    + +G +  +    + +  I N     D + +  
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN-----DGMKKEC 587
Query: 761 QGNEGLCGDIKGFQSCKASKSHKPASR 787
            G     G++  FQ  ++ + ++ ++R
Sbjct: 588 HG----AGNLLEFQGIRSEQLNRLSTR 610

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  210 bits (534), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 233/775 (30%), Positives = 346/775 (44%), Gaps = 86/775 (11%)
Query: 36  EEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLT----N 91
            E+H L+ +K  L + +   LLP W+ N     +PC + G+ C    +V SI+L+    N
Sbjct: 9   REIHQLISFKDVLPDKN---LLPDWSSNK----NPCTFDGVTCRD-DKVTSIDLSSKPLN 60
Query: 92  VGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSG--TIPP 149
           VG           +     +L    + I G +       + L  LDLS NS SG  T   
Sbjct: 61  VGFSAVSSSLLSLTGLESLFL--SNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLT 117
Query: 150 QIGNLSMLKFLYLSAN--QFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVG-----GL 202
            +G+ S LKFL +S+N   F G++   +  L+ +E L L  N +SG   + VG     G 
Sbjct: 118 SLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGA--NVVGWVLSDGC 174
Query: 203 SSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNK 262
             L  LA++ N + G +   +    NL  L + +N+ S  IP  +G+  +L  L +  NK
Sbjct: 175 GELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK 231
Query: 263 LCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIP--LSXX 320
           L G     +   T L  L + +N F   IP     LKSL  L L EN+  G IP  LS  
Sbjct: 232 LSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLS-- 287
Query: 321 XXXXXXXXXXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYK 380
                                  G   +L+GL+L+ N    ++P + G+ + L +  L  
Sbjct: 288 -----------------------GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 381 NSLSGSIPSE-IGNLKSLSNLDLSENKLSGSIPHSLGNLT-NLAILYLHSNTLLGSI-PR 437
           N+ SG +P + +  ++ L  LDLS N+ SG +P SL NL+ +L  L L SN   G I P 
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 438 EIGNLK-SLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTML 496
              N K +L EL L +N  +  I  +L N + +  L L  N LSG IP  LG+L KL  L
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 497 TLSDNQLQGSIPXXXXXXXXXXXXXXXXH-LTCNISESFGIHPKLTFIDLSHNNFYGQIS 555
            L  N L+G IP                + LT  I         L +I LS+N   G+I 
Sbjct: 445 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Query: 556 SDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGXXXXXXXX 615
              G+  NL    +S N+  G++P E+GD   L  +DL+ N   G IP+ +         
Sbjct: 505 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 564
Query: 616 XXXXNQLF------GQLPSELGSLIQLEYLDLSS---NRLSNSIPRSLGNLV-------- 658
                + +      G      G+   LE+  + S   NRLS   P ++ + V        
Sbjct: 565 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 624
Query: 659 -----KLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNL 713
                 + +L++S N     IP ++  + +L  L+L HN +   IP ++ ++R L +L+L
Sbjct: 625 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 684
Query: 714 SHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCG 768
           S N L   IP+    +  L  ID+S N L GPIP    F          N GLCG
Sbjct: 685 SSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 739

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  135 bits (341), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 160/567 (28%), Positives = 259/567 (45%), Gaps = 51/567 (8%)
Query: 233 YLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLF--LGNLTNLDTLYLRNNSFSSS 290
           +L N+ ++GS+ S      SL+SL L  N L G +     LG+ + L  L + +N+    
Sbjct: 80  FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-- 136
Query: 291 IPSEI-GNLK--SLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIPSE-IGNL 346
            P ++ G LK  SL +L+L  N ++G+                      G + S+  G L
Sbjct: 137 FPGKVSGGLKLNSLEVLDLSANSISGA-------------------NVVGWVLSDGCGEL 177
Query: 347 KSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENK 406
           K L+   ++ N++S  +   +    NL    +  N+ S  IP  +G+  +L +LD+S NK
Sbjct: 178 KHLA---ISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK 231
Query: 407 LSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSL-GN 465
           LSG    ++   T L +L + SN  +G IP     LKSL  L L +NK +  I   L G 
Sbjct: 232 LSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGA 289
Query: 466 LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXX--XXXXXXXXXXXX 523
              +T L L  N   G +P   G+   L  L LS N   G +P                 
Sbjct: 290 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 349
Query: 524 XHLTCNISESF-GIHPKLTFIDLSHNNFYGQISSDWGKCPN--LGTFDVSVNNIIGSLPP 580
              +  + ES   +   L  +DLS NNF G I  +  + P   L    +  N   G +PP
Sbjct: 350 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 409
Query: 581 EIGDSSQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLD 640
            + + S+L  + LS N++ G IPS +G            N L G++P EL  +  LE L 
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 469
Query: 641 LSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPS 700
           L  N L+  IP  L N   L++++LS N+   EIP  + +L +L+ L LS+N     IP+
Sbjct: 470 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529
Query: 701 QICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEAL 760
           ++ + RSL  L+L+ N  +  IP    + +G +  +    + +  I N     D + +  
Sbjct: 530 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN-----DGMKKEC 584
Query: 761 QGNEGLCGDIKGFQSCKASKSHKPASR 787
            G     G++  FQ  ++ + ++ ++R
Sbjct: 585 HG----AGNLLEFQGIRSEQLNRLSTR 607

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score =  108 bits (271), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/288 (32%), Positives = 139/288 (48%), Gaps = 15/288 (5%)
Query: 36  EEVHALLKWKTSLQNHDK-GSLLPSWTLNNATKISPCAWFGIHCN---HVGRVNSINLTN 91
           ++  ALL+ K  L N     S LP+    N T      W G+ C+      RVN+++L+ 
Sbjct: 6   QDKQALLQIKKDLGNPTTLSSWLPTTDCCNRT------WLGVLCDTDTQTYRVNNLDLSG 59
Query: 92  VGL-KGTLHDFSFSSFPHLAYLDLQ-VNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPP 149
           + L K      S ++ P+L +L +  +N + G IPP I  +++L YL ++  + SG IP 
Sbjct: 60  LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119
Query: 150 QIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSL-NEL 208
            +  +  L  L  S N  SG +PP I  L  +  +    N++SG IP   G  S L   +
Sbjct: 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179
Query: 209 ALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIP 268
            ++ N L G IPP+  NL NLA + L  N L G      G+ K+   + L  N L   + 
Sbjct: 180 TISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238
Query: 269 LFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIP 316
             +G   NL+ L LRNN    ++P  +  LK L  L +  N L G IP
Sbjct: 239 K-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 89.7 bits (221), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 124/263 (47%), Gaps = 29/263 (11%)
Query: 194 PIPHEVGGLSSLNELALTS-NFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKS 252
           PIP  +  L  LN L +   N L G IPP++  LT L  LY+ + ++SG+IP  +  +K+
Sbjct: 67  PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 253 LSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSL-SILELGENRL 311
           L +L    N L G++P  + +L NL  +    N  S +IP   G+   L + + +  NRL
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 312 NGSIPLSXXXXXXXXXXXXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLT 371
                                    G IP    NL +L+ ++L+ N L        G+  
Sbjct: 187 ------------------------TGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDK 221
Query: 372 NLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTL 431
           N    +L KNSL+  +  ++G  K+L+ LDL  N++ G++P  L  L  L  L +  N L
Sbjct: 222 NTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Query: 432 LGSIPREIGNLKSLFELQLGDNK 454
            G IP+  GNL+        +NK
Sbjct: 281 CGEIPQG-GNLQRFDVSAYANNK 302

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 115/269 (42%), Gaps = 55/269 (20%)
Query: 339 IPSEIGNLKSLSGLELAD-NELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSL 397
           IPS + NL  L+ L +   N L   IP  +  LT L   Y+   ++SG+IP  +  +K+L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 398 SNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSN 457
             LD S N LSG++P S+ +L NL  +    N + G+IP   G+   LF           
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF----------- 176
Query: 458 SISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXX 517
                       T + +  N L+G IP    NL  L  + LS N L+G            
Sbjct: 177 ------------TSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEG------------ 211
Query: 518 XXXXXXXHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKC---PNLGTFDVSVNNI 574
                      + S  FG       I L+ N     ++ D GK     NL   D+  N I
Sbjct: 212 -----------DASVLFGSDKNTQKIHLAKN----SLAFDLGKVGLSKNLNGLDLRNNRI 256
Query: 575 IGSLPPEIGDSSQLHVIDLSANHIIGKIP 603
            G+LP  +     LH +++S N++ G+IP
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 101/222 (45%), Gaps = 25/222 (11%)
Query: 571 VNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSEL 630
           +NN++G +PP I   +QLH + ++  ++ G IP  +             N L G LP  +
Sbjct: 86  INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 631 GSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHY-LNLSTNQFIQEIPIKLEKLIHLSELDL 689
            SL  L  +    NR+S +IP S G+  KL   + +S N+   +IP     L +L+ +DL
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDL 204
Query: 690 SHNFL--------GKEIPSQICNM---------------RSLEMLNLSHNNLSDFIPRCF 726
           S N L        G +  +Q  ++               ++L  L+L +N +   +P+  
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL 264
Query: 727 EEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCG 768
            ++  L  +++S+N L G IP         + A   N+ LCG
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 164/347 (47%), Gaps = 46/347 (13%)
Query: 175 IGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYL 234
           + +L+ +  ++   NQL+   P  +  L+ L ++ + +N +    P  L NLTNL  L L
Sbjct: 59  VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 235 HNNSLSGSIP--------------------SEIGNLKSLSSLALGNNKLCGSIPLFLGNL 274
            NN ++   P                    S +  L SL  L+  +N++    P  L NL
Sbjct: 115 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP--LANL 172
Query: 275 TNLDTLYLRNNSFSS-SIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXX 333
           T L+ L + +N  S  S+ +++ NL+SL       N+++   PL                
Sbjct: 173 TTLERLDISSNKVSDISVLAKLTNLESLIA---TNNQISDITPLGILTNLDELSLNGNQL 229
Query: 334 XXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGN 393
              G++ S    L +L+ L+LA+N++S+  P  L  LT L    L  N +S   P  +  
Sbjct: 230 KDIGTLAS----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG 281
Query: 394 LKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDN 453
           L +L+NL+L+EN+L    P  + NL NL  L L+ N +    P  + +L  L  L   +N
Sbjct: 282 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNN 337
Query: 454 KLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSD 500
           K+S+    SL NLT++  L+   N +S + P  L NL ++T L L+D
Sbjct: 338 KVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 380

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 152/357 (42%), Gaps = 74/357 (20%)
Query: 367 LGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYL 426
           L  +T L A  L   S+ G     +  L +L+ ++ S N+L+   P  L NLT L  + +
Sbjct: 40  LDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILM 92
Query: 427 HSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEE 486
           ++N +    P  + NL +L  L L +N++++     L NLT++  L L  N +S +    
Sbjct: 93  NNNQIADITP--LANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SA 146
Query: 487 LGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXHLTCNISESFGIHPKLTFIDLS 546
           L  L  L  L+ S NQ+    P                +LT            L  +D+S
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKPLA--------------NLTT-----------LERLDIS 181
Query: 547 HNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI 606
            N       S   K  NL +  ++ NN I  + P +G  + L  + L+ N +      +I
Sbjct: 182 SNKVSD--ISVLAKLTNLESL-IATNNQISDITP-LGILTNLDELSLNGNQL-----KDI 232
Query: 607 GXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLS 666
           G                      L SL  L  LDL++N++SN  P  L  L KL  L L 
Sbjct: 233 GT---------------------LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 269
Query: 667 TNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP 723
            NQ     P  L  L  L+ L+L+ N L  E  S I N+++L  L L  NN+SD  P
Sbjct: 270 ANQISNISP--LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP 322

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 164/347 (47%), Gaps = 46/347 (13%)
Query: 175 IGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYL 234
           + +L+ +  ++   NQL+   P  +  L+ L ++ + +N +    P  L NLTNL  L L
Sbjct: 59  VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 235 HNNSLSGSIP--------------------SEIGNLKSLSSLALGNNKLCGSIPLFLGNL 274
            NN ++   P                    S +  L SL  L+  +N++    P  L NL
Sbjct: 115 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP--LANL 172
Query: 275 TNLDTLYLRNNSFSS-SIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXX 333
           T L+ L + +N  S  S+ +++ NL+SL       N+++   PL                
Sbjct: 173 TTLERLDISSNKVSDISVLAKLTNLESLIA---TNNQISDITPLGILTNLDELSLNGNQL 229
Query: 334 XXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGN 393
              G++ S    L +L+ L+LA+N++S+  P  L  LT L    L  N +S   P  +  
Sbjct: 230 KDIGTLAS----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG 281
Query: 394 LKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDN 453
           L +L+NL+L+EN+L    P  + NL NL  L L+ N +    P  + +L  L  L   +N
Sbjct: 282 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN 337
Query: 454 KLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSD 500
           K+S+    SL NLT++  L+   N +S + P  L NL ++T L L+D
Sbjct: 338 KVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 380

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 153/357 (42%), Gaps = 74/357 (20%)
Query: 367 LGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYL 426
           L  +T L A  L   S+ G     +  L +L+ ++ S N+L+   P  L NLT L  + +
Sbjct: 40  LDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILM 92
Query: 427 HSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEE 486
           ++N +    P  + NL +L  L L +N++++     L NLT++  L L  N +S +    
Sbjct: 93  NNNQIADITP--LANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SA 146
Query: 487 LGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXHLTCNISESFGIHPKLTFIDLS 546
           L  L  L  L+ S NQ+    P                +LT            L  +D+S
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKPLA--------------NLTT-----------LERLDIS 181
Query: 547 HNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI 606
            N     IS    K  NL +  ++ NN I  + P +G  + L  + L+ N +      +I
Sbjct: 182 SNKV-SDISV-LAKLTNLESL-IATNNQISDITP-LGILTNLDELSLNGNQL-----KDI 232
Query: 607 GXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLS 666
           G                      L SL  L  LDL++N++SN  P  L  L KL  L L 
Sbjct: 233 GT---------------------LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 269
Query: 667 TNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP 723
            NQ     P  L  L  L+ L+L+ N L  E  S I N+++L  L L  NN+SD  P
Sbjct: 270 ANQISNISP--LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP 322

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 164/347 (47%), Gaps = 47/347 (13%)
Query: 175 IGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYL 234
           + +L+ +  ++   NQL+   P  +  L+ L ++ + +N +    P  L NLTNL  L L
Sbjct: 63  VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 118
Query: 235 HNNSLSGSIP--------------------SEIGNLKSLSSLALGNNKLCGSIPLFLGNL 274
            NN ++   P                    S +  L SL  L+ G N++    P  L NL
Sbjct: 119 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKP--LANL 175
Query: 275 TNLDTLYLRNNSFSS-SIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXX 333
           T L+ L + +N  S  S+ +++ NL+SL       N+++   PL                
Sbjct: 176 TTLERLDISSNKVSDISVLAKLTNLESLIA---TNNQISDITPLGILTNLDELSLNGNQL 232
Query: 334 XXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGN 393
              G++ S    L +L+ L+LA+N++S+  P  L  LT L    L  N +S   P  +  
Sbjct: 233 KDIGTLAS----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG 284
Query: 394 LKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDN 453
           L +L+NL+L+EN+L    P  + NL NL  L L+ N +    P  + +L  L  L   +N
Sbjct: 285 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANN 340
Query: 454 KLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSD 500
           K+S+    SL NLT++  L+   N +S + P  L NL ++T L L+D
Sbjct: 341 KVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 383

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 130/314 (41%), Gaps = 62/314 (19%)
Query: 418 LTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDN 477
           L NL  +   +N L    P  + NL  L ++ + +N++++     L NLT++T L L++N
Sbjct: 66  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNN 121
Query: 478 ALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXHLTCNISESFG-- 535
            ++ + P  L NL  L  L LS N +                      LT     SFG  
Sbjct: 122 QITDIDP--LKNLTNLNRLELSSNTISD--------------ISALSGLTSLQQLSFGNQ 165
Query: 536 ---IHPKLTFIDLSHNNFYGQISSD---WGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLH 589
              + P      L   +      SD     K  NL +  ++ NN I  + P +G  + L 
Sbjct: 166 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL-IATNNQISDITP-LGILTNLD 223
Query: 590 VIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNS 649
            + L+ N +      +IG                      L SL  L  LDL++N++SN 
Sbjct: 224 ELSLNGNQL-----KDIGT---------------------LASLTNLTDLDLANNQISNL 257
Query: 650 IPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLE 709
            P  L  L KL  L L  NQ     P  L  L  L+ L+L+ N L  E  S I N+++L 
Sbjct: 258 AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL--EDISPISNLKNLT 311
Query: 710 MLNLSHNNLSDFIP 723
            L L  NN+SD  P
Sbjct: 312 YLTLYFNNISDISP 325

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 69.3 bits (168), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 163/347 (46%), Gaps = 46/347 (13%)
Query: 175 IGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYL 234
           + +L+ +  ++   NQL+   P  +  L+ L ++ + +N +    P  L NLTNL  L L
Sbjct: 59  VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 235 HNNSLSGSIP--------------------SEIGNLKSLSSLALGNNKLCGSIPLFLGNL 274
            NN ++   P                    S +  L SL  L   +N++    P  L NL
Sbjct: 115 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANL 172
Query: 275 TNLDTLYLRNNSFSS-SIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXX 333
           T L+ L + +N  S  S+ +++ NL+SL       N+++   PL                
Sbjct: 173 TTLERLDISSNKVSDISVLAKLTNLESLIA---TNNQISDITPLGILTNLDELSLNGNQL 229
Query: 334 XXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGN 393
              G++ S    L +L+ L+LA+N++S+  P  L  LT L    L  N +S   P  +  
Sbjct: 230 KDIGTLAS----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG 281
Query: 394 LKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDN 453
           L +L+NL+L+EN+L    P  + NL NL  L L+ N +    P  + +L  L  L   +N
Sbjct: 282 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN 337
Query: 454 KLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSD 500
           K+S+    SL NLT++  L+   N +S + P  L NL ++T L L+D
Sbjct: 338 KVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 380

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 152/357 (42%), Gaps = 74/357 (20%)
Query: 367 LGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYL 426
           L  +T L A  L   S+ G     +  L +L+ ++ S N+L+   P  L NLT L  + +
Sbjct: 40  LDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILM 92
Query: 427 HSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEE 486
           ++N +    P  + NL +L  L L +N++++     L NLT++  L L  N +S +    
Sbjct: 93  NNNQIADITP--LANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SA 146
Query: 487 LGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXHLTCNISESFGIHPKLTFIDLS 546
           L  L  L  L  S NQ+    P                +LT            L  +D+S
Sbjct: 147 LSGLTSLQQLNFSSNQVTDLKPLA--------------NLTT-----------LERLDIS 181
Query: 547 HNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI 606
            N     IS    K  NL +  ++ NN I  + P +G  + L  + L+ N +      +I
Sbjct: 182 SNKV-SDISV-LAKLTNLESL-IATNNQISDITP-LGILTNLDELSLNGNQL-----KDI 232
Query: 607 GXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLS 666
           G                      L SL  L  LDL++N++SN  P  L  L KL  L L 
Sbjct: 233 GT---------------------LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 269
Query: 667 TNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP 723
            NQ     P  L  L  L+ L+L+ N L  E  S I N+++L  L L  NN+SD  P
Sbjct: 270 ANQISNISP--LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP 322

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 69.3 bits (168), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 165/346 (47%), Gaps = 45/346 (13%)
Query: 175 IGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYL 234
           + +L+ +  ++   NQL+   P  +  L+ L ++ + +N +    P  L NLTNL  L L
Sbjct: 59  VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 235 HNNSLSGSIP-----------------SEIGNLKSLSSLALGN--NKLCGSIPLFLGNLT 275
            NN ++   P                 S+I  L  L+SL   N  N++    P  L NLT
Sbjct: 115 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKP--LANLT 172
Query: 276 NLDTLYLRNNSFSS-SIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXX 334
            L+ L + +N  S  S+ +++ NL+SL       N+++   PL                 
Sbjct: 173 TLERLDISSNKVSDISVLAKLTNLESLIA---TNNQISDITPLGILTNLDELSLNGNQLK 229
Query: 335 XXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNL 394
             G++ S    L +L+ L+LA+N++S+  P  L  LT L    L  N +S   P  +  L
Sbjct: 230 DIGTLAS----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 281
Query: 395 KSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNK 454
            +L+NL+L+EN+L    P  + NL NL  L L+ N +    P  + +L  L  L   +NK
Sbjct: 282 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNK 337
Query: 455 LSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSD 500
           +S+    SL NLT++  L+   N +S + P  L NL ++T L L+D
Sbjct: 338 VSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 379

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 136/311 (43%), Gaps = 56/311 (18%)
Query: 418 LTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDN 477
           L NL  +   +N L    P  + NL  L ++ + +N++++     L NLT++T L L++N
Sbjct: 62  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNN 117
Query: 478 ALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXHLTCNISESFGIH 537
            ++ + P  L NL  L  L LS N +                         +IS   G+ 
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTI------------------------SDISALSGLT 151
Query: 538 PKLTFIDLSHNNFYGQISSDWGKCPNLGTF---DVSVNNIIGSLPPEIGDSSQLHVID-- 592
                  L   NF  Q++ D     NL T    D+S N +      +I   ++L  ++  
Sbjct: 152 S------LQQLNFGNQVT-DLKPLANLTTLERLDISSNKV-----SDISVLAKLTNLESL 199
Query: 593 LSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPR 652
           ++ N+ I  I + +G            NQL  +    L SL  L  LDL++N++SN  P 
Sbjct: 200 IATNNQISDI-TPLGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP- 255
Query: 653 SLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLN 712
            L  L KL  L L  NQ     P  L  L  L+ L+L+ N L  E  S I N+++L  L 
Sbjct: 256 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL--EDISPISNLKNLTYLT 310
Query: 713 LSHNNLSDFIP 723
           L  NN+SD  P
Sbjct: 311 LYFNNISDISP 321

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 165/346 (47%), Gaps = 45/346 (13%)
Query: 175 IGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYL 234
           + +L+ +  ++   NQL+   P  +  L+ L ++ + +N +    P  L NLTNL  L L
Sbjct: 59  VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 235 HNNSLSGSIP-----------------SEIGNLKSLSSLALGN--NKLCGSIPLFLGNLT 275
            NN ++   P                 S+I  L  L+SL   N  N++    P  L NLT
Sbjct: 115 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKP--LANLT 172
Query: 276 NLDTLYLRNNSFSS-SIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXX 334
            L+ L + +N  S  S+ +++ NL+SL       N+++   PL                 
Sbjct: 173 TLERLDISSNKVSDISVLAKLTNLESLIA---TNNQISDITPLGILTNLDELSLNGNQLK 229
Query: 335 XXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNL 394
             G++ S    L +L+ L+LA+N++S+  P  L  LT L    L  N +S   P  +  L
Sbjct: 230 DIGTLAS----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 281
Query: 395 KSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNK 454
            +L+NL+L+EN+L    P  + NL NL  L L+ N +    P  + +L  L  L   +NK
Sbjct: 282 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNK 337
Query: 455 LSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSD 500
           +S+    SL NLT++  L+   N +S + P  L NL ++T L L+D
Sbjct: 338 VSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 379

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 136/311 (43%), Gaps = 56/311 (18%)
Query: 418 LTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDN 477
           L NL  +   +N L    P  + NL  L ++ + +N++++     L NLT++T L L++N
Sbjct: 62  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNN 117
Query: 478 ALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXHLTCNISESFGIH 537
            ++ + P  L NL  L  L LS N +                         +IS   G+ 
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTI------------------------SDISALSGLT 151
Query: 538 PKLTFIDLSHNNFYGQISSDWGKCPNLGTF---DVSVNNIIGSLPPEIGDSSQLHVID-- 592
                  L   NF  Q++ D     NL T    D+S N +      +I   ++L  ++  
Sbjct: 152 S------LQQLNFGNQVT-DLKPLANLTTLERLDISSNKV-----SDISVLAKLTNLESL 199
Query: 593 LSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPR 652
           ++ N+ I  I + +G            NQL  +    L SL  L  LDL++N++SN  P 
Sbjct: 200 IATNNQISDI-TPLGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP- 255
Query: 653 SLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLN 712
            L  L KL  L L  NQ     P  L  L  L+ L+L+ N L  E  S I N+++L  L 
Sbjct: 256 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL--EDISPISNLKNLTYLT 310
Query: 713 LSHNNLSDFIP 723
           L  NN+SD  P
Sbjct: 311 LYFNNISDISP 321

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 164/347 (47%), Gaps = 47/347 (13%)
Query: 175 IGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYL 234
           + +L+ +  ++   NQL+   P  +  L+ L ++ + +N +    P  L NLTNL  L L
Sbjct: 64  VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119
Query: 235 HNNSLSGSIP--------------------SEIGNLKSLSSLALGNNKLCGSIPLFLGNL 274
            NN ++   P                    S +  L SL  L+ G N++    P  L NL
Sbjct: 120 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKP--LANL 176
Query: 275 TNLDTLYLRNNSFSS-SIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXX 333
           T L+ L + +N  S  S+ +++ NL+SL       N+++   PL                
Sbjct: 177 TTLERLDISSNKVSDISVLAKLTNLESLIA---TNNQISDITPLGILTNLDELSLNGNQL 233
Query: 334 XXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGN 393
              G++ S    L +L+ L+LA+N++S+  P  L  LT L    L  N +S   P  +  
Sbjct: 234 KDIGTLAS----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG 285
Query: 394 LKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDN 453
           L +L+NL+L+EN+L    P  + NL NL  L L+ N +    P  + +L  L  L   +N
Sbjct: 286 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN 341
Query: 454 KLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSD 500
           K+S+    SL NLT++  L+   N +S + P  L NL ++T L L+D
Sbjct: 342 KVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 384

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 130/314 (41%), Gaps = 62/314 (19%)
Query: 418 LTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDN 477
           L NL  +   +N L    P  + NL  L ++ + +N++++     L NLT++T L L++N
Sbjct: 67  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNN 122
Query: 478 ALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXHLTCNISESFG-- 535
            ++ + P  L NL  L  L LS N +                      LT     SFG  
Sbjct: 123 QITDIDP--LKNLTNLNRLELSSNTISD--------------ISALSGLTSLQQLSFGNQ 166
Query: 536 ---IHPKLTFIDLSHNNFYGQISSD---WGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLH 589
              + P      L   +      SD     K  NL +  ++ NN I  + P +G  + L 
Sbjct: 167 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL-IATNNQISDITP-LGILTNLD 224
Query: 590 VIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNS 649
            + L+ N +      +IG                      L SL  L  LDL++N++SN 
Sbjct: 225 ELSLNGNQL-----KDIGT---------------------LASLTNLTDLDLANNQISNL 258
Query: 650 IPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLE 709
            P  L  L KL  L L  NQ     P  L  L  L+ L+L+ N L  E  S I N+++L 
Sbjct: 259 AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL--EDISPISNLKNLT 312
Query: 710 MLNLSHNNLSDFIP 723
            L L  NN+SD  P
Sbjct: 313 YLTLYFNNISDISP 326

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 76/168 (45%), Gaps = 4/168 (2%)
Query: 338 SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKS 396
           +IPS I        L+L  N+LSS        LT L   YL  N L  ++P+ I   LK+
Sbjct: 30  AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86
Query: 397 LSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLS 456
           L  L +++NKL          L NLA L L  N L    PR   +L  L  L LG N+L 
Sbjct: 87  LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146
Query: 457 NSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ 504
           +        LT +  L LY+N L  V       L +L  L L +NQL+
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 637 EYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFLG 695
           + LDL SN+LS+   ++   L KL  L L+ N+ +Q +P  + ++L +L  L ++ N L 
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKL- 97
Query: 696 KEIPSQICN-MRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 743
           + +P  + + + +L  L L  N L    PR F+ +  L Y+ + YNEL 
Sbjct: 98  QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 70/157 (44%), Gaps = 1/157 (0%)
Query: 346 LKSLSGLELADN-ELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSE 404
           L  L  L+L+DN +L S  P     L  L   +L +  L    P     L +L  L L +
Sbjct: 78  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 405 NKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLG 464
           N L      +  +L NL  L+LH N +     R    L SL  L L  N++++   H+  
Sbjct: 138 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 197
Query: 465 NLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDN 501
           +L  +  L L+ N LS +  E L  L  L  L L+DN
Sbjct: 198 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234

>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From Listeria Monocytogenes Str. 4b F2365 At 1.90 A Resolution Length = 231

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 84/163 (51%), Gaps = 12/163 (7%)
Query: 346 LKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSEN 405
           L +L GLEL DN+++   P  L NLT +    L  N L     S I  L+S+  LDL+  
Sbjct: 68  LNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST 123
Query: 406 KLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGN 465
           +++   P  L  L+NL +LYL  N +    P  +  L +L  L +G+N++++     L N
Sbjct: 124 QITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVND--LTPLAN 177
Query: 466 LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP 508
           L+ +T L   DN +S + P  L +L  L  + L DNQ+    P
Sbjct: 178 LSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDVSP 218

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 70/157 (44%), Gaps = 1/157 (0%)
Query: 346 LKSLSGLELADN-ELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSE 404
           L  L  L+L+DN +L S  P     L  L   +L +  L    P     L +L  L L +
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138
Query: 405 NKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLG 464
           N L      +  +L NL  L+LH N +     R    L SL  L L  N++++   H+  
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198
Query: 465 NLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDN 501
           +L  +  L L+ N LS +  E L  L  L  L L+DN
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 140/300 (46%), Gaps = 26/300 (8%)
Query: 106 FPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSAN 165
             +L YL+L  NQI  I P  + N+ KL  L + +N  +     Q  NL+ L+ LYL+ +
Sbjct: 65  LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISALQ--NLTNLRELYLNED 120
Query: 166 QFSGRIPPQIGHLSYIEALHLFKNQ-LSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLG 224
             S   P  + +L+   +L+L  N  LS   P  +   + LN L +T + +K   P  + 
Sbjct: 121 NISDISP--LANLTKXYSLNLGANHNLSDLSP--LSNXTGLNYLTVTESKVKDVTP--IA 174
Query: 225 NLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRN 284
           NLT+L  L L+ N +    P  + +L SL       N++    P+   N T L++L + N
Sbjct: 175 NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPV--ANXTRLNSLKIGN 230
Query: 285 NSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIPSEIG 344
           N  +   P  + NL  L+ LE+G N+++    ++                    I S + 
Sbjct: 231 NKITDLSP--LANLSQLTWLEIGTNQISD---INAVKDLTKLKXLNVGSNQISDI-SVLN 284
Query: 345 NLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSE 404
           NL  L+ L L +N+L +     +G LTNL   +L +N ++   P     L SLS  D ++
Sbjct: 285 NLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP-----LASLSKXDSAD 339

>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 129/284 (45%), Gaps = 21/284 (7%)
Query: 175 IGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYL 234
           I +L+ +E L+L  NQ++   P  +  L  L  L + +N  K +   +L NLTNL  LYL
Sbjct: 62  IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN--KITDISALQNLTNLRELYL 117
Query: 235 HNNSLSGSIPSEIGNLKSLSSLALG-NNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPS 293
           + +++S   P  + NL    SL LG N+ L    PL   N T L+ L +  +      P 
Sbjct: 118 NEDNISDISP--LANLTKXYSLNLGANHNLSDLSPL--SNXTGLNYLTVTESKVKDVTP- 172
Query: 294 EIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIPSEIGNLKSLSGLE 353
            I NL  L  L L  N++    PL+                      + + N   L+ L+
Sbjct: 173 -IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDI----TPVANXTRLNSLK 227
Query: 354 LADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPH 413
           + +N+++   P  L NL+ L    +  N +S    + + +L  L  L++  N++S     
Sbjct: 228 IGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKXLNVGSNQISD--IS 281
Query: 414 SLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSN 457
            L NL+ L  L+L++N L       IG L +L  L L  N +++
Sbjct: 282 VLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITD 325

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 60/198 (30%), Positives = 86/198 (43%), Gaps = 3/198 (1%)
Query: 114 LQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSAN-QFSGRIP 172
           L  N+I  +      +   L  L L SN+ +G        L++L+ L LS N Q     P
Sbjct: 38  LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 173 PQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAIL 232
                L ++  LHL +  L    P    GL++L  L L  N L+     +  +L NL  L
Sbjct: 98  TTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHL 157
Query: 233 YLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIP 292
           +LH N +          L SL  L L  N +    P    +L  L TLYL  N+  S +P
Sbjct: 158 FLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL-SMLP 216
Query: 293 SEI-GNLKSLSILELGEN 309
           +E+   L+SL  L L +N
Sbjct: 217 AEVLVPLRSLQYLRLNDN 234

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 92/227 (40%), Gaps = 33/227 (14%)
Query: 232 LYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNS----F 287
           ++LH N +S    +   + ++L+ L L +N L G        LT L+ L L +N+     
Sbjct: 36  IFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVV 95
Query: 288 SSSIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIPSEIGNLK 347
             +    +G+L +L +   G   L                            P     L 
Sbjct: 96  DPTTFRGLGHLHTLHLDRCGLQELG---------------------------PGLFRGLA 128
Query: 348 SLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKL 407
           +L  L L DN L +   +   +L NL   +L+ N +          L SL  L L +N +
Sbjct: 129 ALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHV 188
Query: 408 SGSIPHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDN 453
           +   PH+  +L  L  LYL +N  L  +P E+   L+SL  L+L DN
Sbjct: 189 ARVHPHAFRDLGRLMTLYLFANN-LSMLPAEVLVPLRSLQYLRLNDN 234

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 68/157 (43%), Gaps = 1/157 (0%)
Query: 346 LKSLSGLELADN-ELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSE 404
           L  L  L+L+DN +L    P     L +L   +L +  L    P     L +L  L L +
Sbjct: 78  LTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 405 NKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLG 464
           N L     ++  +L NL  L+LH N +          L SL  L L  N ++    H+  
Sbjct: 138 NNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFR 197
Query: 465 NLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDN 501
           +L  +  L L+ N LS +  E L  L  L  L L+DN
Sbjct: 198 DLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234

>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal Domains Length = 308

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 83/163 (50%), Gaps = 12/163 (7%)
Query: 346 LKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSEN 405
           L +L GLEL DN+++   P  L NLT +    L  N L     S I  L+S+  LDL+  
Sbjct: 62  LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST 117
Query: 406 KLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGN 465
           +++   P  L  L+NL +LYL  N +    P  +  L +L  L +G+ ++S+     L N
Sbjct: 118 QITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD--LTPLAN 171
Query: 466 LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP 508
           L+ +T L   DN +S + P  L +L  L  + L +NQ+    P
Sbjct: 172 LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 136/350 (38%), Gaps = 64/350 (18%)
Query: 414 SLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHS--LGNLTHMTL 471
           +  NL NL IL L S+ +    P     L  LFEL+L    LS+++       NL  +T 
Sbjct: 68  AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127
Query: 472 LALYDNALSGV-IPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXHLTCNI 530
           L L  N +  + +    G L  L  +  S NQ+                      L C  
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI---------------------FLVCEH 166
Query: 531 SESFGIHPKLTFIDLSHNNFYGQISSDWGKCPN------LGTFDVSVN----NIIGSLPP 580
                    L+F  L+ N+ Y ++S DWGKC N      L   DVS N    +I G+   
Sbjct: 167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN 226
Query: 581 EIGDSSQLHVIDLSANHIIG--------KIPSEIGXXXXXXXXXXXXNQLFGQLPSELGS 632
            I  S    +I   A+HI+G        K P +              N   G   S +  
Sbjct: 227 AISKSQAFSLI--LAHHIMGAGFGFHNIKDPDQ--------------NTFAGLARSSV-- 268
Query: 633 LIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHN 692
                +LDLS   + +   R    L  L  LNL+ N+  +        L +L  L+LS+N
Sbjct: 269 ----RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324
Query: 693 FLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 742
            LG+   S    +  +  ++L  N+++    + F+ +  L  +D+  N L
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374

>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 520

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 16/173 (9%)
Query: 128 GNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFS--GRIPPQIGHLSYIEALH 185
             IS   +LD S+N  + T+    G+L+ L+ L L  NQ     +I      +  ++ L 
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380
Query: 186 LFKNQLS-GPIPHEVGGLSSLNELALTSNFLKGSI----PPSLGNLTNLAILYLHNNSLS 240
           + +N +S      +     SL  L ++SN L  +I    PP       + +L LH+N + 
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP------RIKVLDLHSNKIK 434
Query: 241 GSIPSEIGNLKSLSSLALGNNKLCGSIPL-FLGNLTNLDTLYLRNNSFSSSIP 292
            SIP ++  L++L  L + +N+L  S+P      LT+L  ++L  N +  S P
Sbjct: 435 -SIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 105/269 (39%), Gaps = 59/269 (21%)
Query: 68  ISPCAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQI 127
           + P   F   C+    +  +  +++GL+    D      P  A LDLQ N+I  I     
Sbjct: 21  MGPVCPFRCQCH----LRVVQCSDLGLEKVPKDLP----PDTALLDLQNNKITEIKDGDF 72
Query: 128 GNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLF 187
            N+  L  L L +N  S   P     L  L+ LYLS NQ    +P ++     ++ L + 
Sbjct: 73  KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVH 129
Query: 188 KNQLSGPIPHEVGGLSSLNELALTSNFLKGS----------------------------- 218
           +N+++        GL+ +  + L +N LK S                             
Sbjct: 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 189
Query: 219 IPPSL------GN------------LTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGN 260
           +PPSL      GN            L NLA L L  NS+S      + N   L  L L N
Sbjct: 190 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249
Query: 261 NKLCGSIPLFLGNLTNLDTLYLRNNSFSS 289
           NKL   +P  L +   +  +YL NN+ S+
Sbjct: 250 NKLV-KVPGGLADHKYIQVVYLHNNNISA 277

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 90/226 (39%), Gaps = 25/226 (11%)
Query: 228 NLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSF 287
           + A+L L NN ++     +  NLK+L +L L NNK+    P     L  L+ LYL  N  
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
Query: 288 S---SSIPSEIGNLK------------------SLSILELGENRLNGS-IPLSXXXXXXX 325
                 +P  +  L+                   + ++ELG N L  S I          
Sbjct: 113 KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 326 XXXXXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSG 385
                       +IP   G   SL+ L L  N+++      L  L NLA   L  NS+S 
Sbjct: 173 LSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
Query: 386 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTL 431
                + N   L  L L+ NKL   +P  L +   + ++YLH+N +
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 105/269 (39%), Gaps = 59/269 (21%)
Query: 68  ISPCAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQI 127
           + P   F   C+    +  +  +++GL+    D      P  A LDLQ N+I  I     
Sbjct: 21  MGPVCPFRCQCH----LRVVQCSDLGLEKVPKDLP----PDTALLDLQNNKITEIKDGDF 72
Query: 128 GNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLF 187
            N+  L  L L +N  S   P     L  L+ LYLS NQ    +P ++     ++ L + 
Sbjct: 73  KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVH 129
Query: 188 KNQLSGPIPHEVGGLSSLNELALTSNFLKGS----------------------------- 218
           +N+++        GL+ +  + L +N LK S                             
Sbjct: 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 189
Query: 219 IPPSL------GN------------LTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGN 260
           +PPSL      GN            L NLA L L  NS+S      + N   L  L L N
Sbjct: 190 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249
Query: 261 NKLCGSIPLFLGNLTNLDTLYLRNNSFSS 289
           NKL   +P  L +   +  +YL NN+ S+
Sbjct: 250 NKLV-KVPGGLADHKYIQVVYLHNNNISA 277

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 90/226 (39%), Gaps = 25/226 (11%)
Query: 228 NLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSF 287
           + A+L L NN ++     +  NLK+L +L L NNK+    P     L  L+ LYL  N  
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
Query: 288 S---SSIPSEIGNLK------------------SLSILELGENRLNGS-IPLSXXXXXXX 325
                 +P  +  L+                   + ++ELG N L  S I          
Sbjct: 113 KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 326 XXXXXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSG 385
                       +IP   G   SL+ L L  N+++      L  L NLA   L  NS+S 
Sbjct: 173 LSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
Query: 386 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTL 431
                + N   L  L L+ NKL   +P  L +   + ++YLH+N +
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/127 (33%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 352 LELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSENKLSGS 410
           L L DN+++   P    +L NL   YL  N L G++P  +  +L  L+ LDL  N+L+  
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 411 IPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHS----LGNL 466
                  L +L  L++  N L   +PR I  L  L  L L  N+L  SI H     L +L
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSL 161
Query: 467 THMTLLA 473
           TH  L  
Sbjct: 162 THAYLFG 168

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 620 NQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLE 679
           NQ+    P    SLI L+ L L SN+L         +L +L  L+L TNQ         +
Sbjct: 50  NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD 109
Query: 680 KLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLY 734
           +L+HL EL +  N L  E+P  I  +  L  L L  N L       F+ ++ L +
Sbjct: 110 RLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 61/110 (55%), Gaps = 6/110 (5%)
Query: 636 LEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFL 694
           + YL L  N+L +    +L  L  L YL L+ NQ +Q +P  + +KL +L EL L  N L
Sbjct: 65  VRYLALGGNKLHDI--SALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQL 121
Query: 695 GKEIPSQICN-MRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 743
            + +P  + + + +L  LNL+HN L       F+++  L  +D+SYN+L 
Sbjct: 122 -QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 71/159 (44%)
Query: 341 SEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNL 400
            E  +   L  LEL +N +S+  P    NL NL    L  N L          L +L+ L
Sbjct: 50  DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109
Query: 401 DLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSIS 460
           D+SENK+   + +   +L NL  L +  N L+    R    L SL +L L    L++  +
Sbjct: 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169
Query: 461 HSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLS 499
            +L +L  + +L L    ++ +       L +L +L +S
Sbjct: 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 372 NLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTL 431
           ++   YL  N  +  +P E+ N K L+ +DLS N++S     S  N+T L  L L  N L
Sbjct: 32  DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 432 LGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNAL 479
               PR    LKSL  L L  N +S     +  +L+ ++ LA+  N L
Sbjct: 91  RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 58/117 (49%), Gaps = 6/117 (5%)
Query: 179 SYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNN 237
           S    L L  N+L   +PH V   L+ L +L+L+ N ++         LT L ILYLH N
Sbjct: 28  SSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86
Query: 238 SLSGSIPSEI-GNLKSLSSLALGNNKLCGSIPL-FLGNLTNLDTLYLRNNSFSSSIP 292
            L  S+P+ +   L  L  LAL  N+L  S+P      LT+L  ++L  N +  S P
Sbjct: 87  KLQ-SLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 229 LAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFS 288
           L  LYL+ NSL+  +P+EI NL +L  L L +N+L  S+P  LG+   L   Y  +N   
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDN-MV 305
Query: 289 SSIPSEIGNLKSLSILELGENRL 311
           +++P E GNL +L  L +  N L
Sbjct: 306 TTLPWEFGNLCNLQFLGVEGNPL 328

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 402 LSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISH 461
           +S + L G +PH       L  L L  N L G  P        + ELQLG+NK+    + 
Sbjct: 44  ISSDGLFGRLPH-------LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK 96
Query: 462 SLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDN 501
               L  +  L LYDN +S V+P    +L  LT L L+ N
Sbjct: 97  MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
Query: 367 LGNLTNLAAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILY 425
           L  LTNL    L  N L  S+P+ +   L +L  L L EN+L          LTNL  LY
Sbjct: 81  LKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLY 139
Query: 426 LHSNTLLGSIPREI-GNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIP 484
           L+ N  L S+P+ +   L +L  L L +N+L +        LT +  L+L DN L  V  
Sbjct: 140 LYHNQ-LQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPD 198
Query: 485 EELGNLVKLTMLTLSDN 501
                L  LT + L +N
Sbjct: 199 GVFDRLTSLTHIWLLNN 215

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 1/159 (0%)
Query: 84  VNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSF 143
              ++L + GL  TL D +F     L +L+L  NQ+  +      ++++L  L L++N  
Sbjct: 37  TEKLDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
Query: 144 SGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLS 203
           +        +L+ L  LYL  NQ           L+ ++ L L  NQL          L+
Sbjct: 96  ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 204 SLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGS 242
           +L  L+L++N L+     +   L  L  + L  N    S
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 1/159 (0%)
Query: 84  VNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSF 143
              ++L + GL  TL D +F     L +L+L  NQ+  +      ++++L  L L++N  
Sbjct: 37  TEKLDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
Query: 144 SGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLS 203
           +        +L+ L  LYL  NQ           L+ ++ L L  NQL          L+
Sbjct: 96  ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 204 SLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGS 242
           +L  L+L++N L+     +   L  L  + L  N    S
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 75/180 (41%), Gaps = 15/180 (8%)
Query: 112 LDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRI 171
           LDLQ   +  +       ++KL +L+L  N           +L+ L  L L+ NQ +   
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 172 PPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPP-SLGNLTNLA 230
                HL+ ++ L+L  NQL          L+ L EL L +N L+ SIP  +   LTNL 
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQ 158
Query: 231 ILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYL----RNNS 286
            L L  N L          L  L ++ L  N+          + +  +TLYL    R NS
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF---------DCSRCETLYLSQWIRENS 209

>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 88/209 (42%), Gaps = 16/209 (7%)
Query: 214 FLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCG--SIPLFL 271
           F+    PPS  + T    L    N  + S+      LK L +L L  N L     + L  
Sbjct: 343 FIHMVCPPSPSSFT---FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT 399
Query: 272 GNLTNLDTLYLRNNSFSS-SIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXX 330
            N+++L+TL +  NS +S +        +S+ +L L  N L GS+               
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV---FRCLPPKVKVLD 456
Query: 331 XXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSE 390
                  SIP ++ +L++L  L +A N+L S        LT+L   +L+ N    + P  
Sbjct: 457 LHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG- 515
Query: 391 IGNLKSLSNLDLSENKLSGSIPHSLGNLT 419
              ++ LS      NK SG + +S G++ 
Sbjct: 516 ---IRYLSEWI---NKHSGVVRNSAGSVA 538

>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 6/144 (4%)
Query: 344 GNLKSLSGLELADNELSS--SIPHYLGNLTNLAAFYLYKNSL-SGSIPSEIGNLKSLSNL 400
             LK L  L L  N L +   +     N+++L    +  NSL S +        +S+  L
Sbjct: 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433
Query: 401 DLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSIS 460
           +LS N L+GS+   L     + +L LH+N ++ SIP+++ +L++L EL +  N+L +   
Sbjct: 434 NLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPD 490
Query: 461 HSLGNLTHMTLLALYDNALSGVIP 484
                LT +  + L+DN      P
Sbjct: 491 GVFDRLTSLQYIWLHDNPWDCTCP 514

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 4/134 (2%)
Query: 113 DLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIP 172
           DL  ++IF ++     + + L+ L L+ N  +         L+ L  L LS N F G I 
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSID 339
Query: 173 PQI-GHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSL-GNLTNLA 230
            ++  +L  +E L L  N +         GL +L ELAL +N LK S+P  +   LT+L 
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQ 398
Query: 231 ILYLHNNSLSGSIP 244
            ++LH N    S P
Sbjct: 399 KIWLHTNPWDCSCP 412

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 75/169 (44%), Gaps = 32/169 (18%)
Query: 586 SQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNR 645
           +QL  +DL+A H+ G                         LPS +  L  L+ L LS N 
Sbjct: 275 TQLQELDLTATHLKG-------------------------LPSGMKGLNLLKKLVLSVNH 309
Query: 646 LSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIK---LEKLIHLSELDLSHNFL-GKEIPS- 700
                  S  N   L +L +  N  ++++ +    LEKL +L  LDLSHN +   +  S 
Sbjct: 310 FDQLCQISAANFPSLTHLYIRGN--VKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSL 367
Query: 701 QICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS 749
           Q+ N+  L+ LNLSHN       + F+E   L  +D+++  LH   P S
Sbjct: 368 QLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQS 416

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 92/209 (44%), Gaps = 29/209 (13%)
Query: 538 PKLTFIDLSHN--NFYGQIS-SDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLS 594
           P L F+DLS N  +F G  S SD+G   +L   D+S N +I      +G   QL  +D  
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGT-TSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQ 404
Query: 595 ANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSL 654
            +++  K  SE                      S   SL  L YLD+S      +     
Sbjct: 405 HSNL--KQMSEF---------------------SVFLSLRNLIYLDISHTHTRVAFNGIF 441
Query: 655 GNLVKLHYLNLSTNQFIQE-IPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNL 713
             L  L  L ++ N F +  +P    +L +L+ LDLS   L +  P+   ++ SL++LN+
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 714 SHNNLSDFIPRCFEEMNGLLYIDISYNEL 742
           SHNN        ++ +N L  +D S N +
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	893
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-120
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-99
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-111
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-102
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-75
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-91
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-89
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-67
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-90
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-90
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-89
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-86
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-66
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-50
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-45
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-86
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-85
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-84
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-78
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-85
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-84
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-76
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-53
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-77
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-75
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-64
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-46
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-63
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-60
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-56
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-61
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-57
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-54
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-45
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-57
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-55
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-51
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-47
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-42
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-56
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-56
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-54
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-52
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-46
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-55
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-54
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-54
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-52
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-48
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-54
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-54
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-50
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-53
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-52
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-43
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-41
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-47
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-46
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-44
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-40
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-37
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-35
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-46
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-46
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-45
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-45
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-43
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-40
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-39
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-43
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-40
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-39
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-36
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-43
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-42
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-41
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-40
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-39
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-37
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-34
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-30
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-42
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-40
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-40
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-39
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-38
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-38
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-36
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-30
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-41
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-40
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-38
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-36
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-40
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-38
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-38
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-38
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-37
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-37
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-39
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-37
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-37
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-35
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-37
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-33
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-32
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-32
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-32
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-36
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-36
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-36
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-30
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-30
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-28
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-27
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-34
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-33
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-33
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-30
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-33
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-32
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-31
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-30
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-31
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-25
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-30
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-29
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-27
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-27
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-25
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-30
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-29
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-28
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-27
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-25
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-28
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-27
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-27
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-25
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-24
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-24
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-28
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-27
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-28
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-27
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-27
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-28
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-26
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-25
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-24
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-22
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-22
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-27
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-24
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-21
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-20
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-25
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-25
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-22
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-23
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-22
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-22
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-21
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-21
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-23
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-23
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-23
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-21
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-21
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-20
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-22
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-21
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-22
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-21
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-21
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-20
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-21
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-21
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-21
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-21
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-19
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-18
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-18
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-20
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-19
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-18
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-19
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-17
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-18
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-17
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-17
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-17
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-16
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-16
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-16
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-13
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-13
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-17
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-16
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-16
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-15
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-15
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-14
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-14
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-14
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-15
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-14
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-14
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-14
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-15
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-14
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-14
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-13
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-14
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-14
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-12
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-12
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-12
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-10
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-11
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-10
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-10
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-10
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	7e-09
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	8e-09
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	9e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	7e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	4e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	6e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	5e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	7e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	6e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  637 bits (1646), Expect = 0.0
 Identities = 235/753 (31%), Positives = 336/753 (44%), Gaps = 34/753 (4%)

Query: 32  SDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTN 91
                E+H L+ +K  L +    +LLP W+ N     +PC + G+ C    +V SI+L++
Sbjct: 8   QSLYREIHQLISFKDVLPDK---NLLPDWSSNK----NPCTFDGVTCRD-DKVTSIDLSS 59

Query: 92  VGLKGTLHDF--SFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPP 149
             L         S  S   L  L L  + I G +       + L  LDLS NS SG +  
Sbjct: 60  KPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTT 118

Query: 150 --QIGNLSMLKFLYLSANQFSGRIP-PQIGHLSYIEALHLFKNQLSGPIPHEV---GGLS 203
              +G+ S LKFL +S+N             L+ +E L L  N +SG          G  
Sbjct: 119 LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178

Query: 204 SLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKL 263
            L  LA++ N + G +   +    NL  L + +N+ S  IP  +G+  +L  L +  NKL
Sbjct: 179 ELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 235

Query: 264 CGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSL-GNL 322
            G     +   T L  L + +N F   IP     LKSL  L L EN+  G IP  L G  
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGAC 293

Query: 323 TNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIP-HYLGNLTNLAAFYLYKN 381
             L  L L  N   G++P   G+   L  L L+ N  S  +P   L  +  L    L  N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353

Query: 382 SLSGSIPSEIGNLK-SLSNLDLSENKLSGSIPHSLGN--LTNLAILYLHSNTLLGSIPRE 438
             SG +P  + NL  SL  LDLS N  SG I  +L       L  LYL +N   G IP  
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413

Query: 439 IGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTL 498
           + N   L  L L  N LS +I  SLG+L+ +  L L+ N L G IP+EL  +  L  L L
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473

Query: 499 SDNQLQGSIPN-LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSD 557
             N L G IP+ L N TNL  + L+ N LT  I +  G    L  + LS+N+F G I ++
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533

Query: 558 WGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLIL 617
            G C +L   D++ N   G++P  +   S      ++AN I GK    I       +   
Sbjct: 534 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSG----KIAANFIAGKRYVYIKNDGMKKECHG 589

Query: 618 RRN--QLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIP 675
             N  +  G    +L  L      +++S         +  N   + +L++S N     IP
Sbjct: 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649

Query: 676 IKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYI 735
            ++  + +L  L+L HN +   IP ++ ++R L +L+LS N L   IP+    +  L  I
Sbjct: 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709

Query: 736 DISYNELHGPIPNSTAFSDALMEALQGNEGLCG 768
           D+S N L GPIP    F          N GLCG
Sbjct: 710 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  379 bits (975), Expect = e-120
 Identities = 148/662 (22%), Positives = 233/662 (35%), Gaps = 42/662 (6%)

Query: 133 LKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLS 192
            +  D S    +  +P  +   + +  L L+ NQ            S + +L +  N +S
Sbjct: 6   HEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 193 GPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKS 252
              P     L  L  L L  N L      +    TNL  L+L +NS+     +     K+
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122

Query: 253 LSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLK--SLSILELGENR 310
           L +L L +N L  +       L NL  L L NN   +    E+      SL  LEL  N+
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182

Query: 311 LNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIG---NLKSLSGLELADNELSSSIPHYL 367
           +    P     +  L  L+L    L  S+  ++       S+  L L++++LS++     
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242

Query: 368 GNL--TNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILY 425
             L  TNL    L  N+L+         L  L    L  N +     HSL  L N+  L 
Sbjct: 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN 302

Query: 426 LHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPE 485
           L  +                 +  +    L      S   L  +  L + DN + G+   
Sbjct: 303 LKRS---------------FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347

Query: 486 ELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLI-----RLRLNRNHLTCNISESFGIHPKL 540
               L+ L  L+LS++             +L       L L +N ++   S++F     L
Sbjct: 348 MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407

Query: 541 TFIDLSHNNFYGQISSD-WGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHI- 598
             +DL  N    +++   W    N+    +S N  +            L  + L    + 
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

Query: 599 -IGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLS--------NS 649
            +   PS    L +L  L L  N +       L  L +LE LDL  N L+          
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527

Query: 650 IPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLE 709
               L  L  LH LNL +N F +      + L  L  +DL  N L     S   N  SL+
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK 587

Query: 710 MLNLSHNNLSDFIPRCFEE-MNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCG 768
            LNL  N ++    + F      L  +D+ +N       +   F + + E       L  
Sbjct: 588 SLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSS 647

Query: 769 DI 770
             
Sbjct: 648 HY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  323 bits (831), Expect = 3e-99
 Identities = 124/590 (21%), Positives = 200/590 (33%), Gaps = 47/590 (7%)

Query: 97  TLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSM 156
            L        P L  L+LQ N++  +        + L  L L SNS              
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122

Query: 157 LKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHE--VGGLSSLNELALTSNF 214
           L  L LS N  S         L  ++ L L  N++      E  +   SSL +L L+SN 
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182

Query: 215 LKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIG---NLKSLSSLALGNNKLCGSIPLFL 271
           +K   P     +  L  L+L+N  L  S+  ++       S+ +L+L N++L  +     
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242

Query: 272 GNL--TNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLY 329
             L  TNL  L L  N+ +         L  L    L  N +      SL  L N+  L 
Sbjct: 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN 302

Query: 330 LYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPS 389
           L  +                +   ++   L          L  L    +  N + G   +
Sbjct: 303 LKRS---------------FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347

Query: 390 EIGNLKSLSNLDLSENKLSGSIPHSLG----NLTNLAILYLHSNTLLGSIPREIGNLKSL 445
               L +L  L LS +  S     +        + L IL L  N +          L  L
Sbjct: 348 MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407

Query: 446 FELQLGDNKLSNSIS-HSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ 504
             L LG N++   ++      L ++  + L  N    +       +  L  L L    L+
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

Query: 505 GSIPN---LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKC 561
               +    + L NL  L L+ N++     +      KL  +DL HNN            
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA---------- 517

Query: 562 PNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQ 621
                  +  +   G     +   S LH+++L +N            L  L  + L  N 
Sbjct: 518 ------RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN 571

Query: 622 LFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLG-NLVKLHYLNLSTNQF 670
           L     S   + + L+ L+L  N +++   +  G     L  L++  N F
Sbjct: 572 LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  137 bits (346), Expect = 2e-33
 Identities = 50/264 (18%), Positives = 89/264 (33%), Gaps = 24/264 (9%)

Query: 86  SINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSG 145
            ++L    +   L    +    ++  + L  N+   +       +  L+ L L   +   
Sbjct: 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468

Query: 146 --TIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLS 203
             + P     L  L  L LS N  +      +  L  +E L L  N L+           
Sbjct: 469 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA----------- 517

Query: 204 SLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKL 263
                 L  +   G     L  L++L IL L +N           +L  L  + LG N L
Sbjct: 518 -----RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL 572

Query: 264 CGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIG-NLKSLSILELGENRLNGSIPLSLG-- 320
                    N  +L +L L+ N  +S      G   ++L+ L++  N  + +        
Sbjct: 573 NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFV 632

Query: 321 ---NLTNLDTLYLYTNSLSGSIPS 341
              N T+ +   L ++ L  + P 
Sbjct: 633 NWINETHTNIPELSSHYLCNTPPH 656

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.7 bits (192), Expect = 8e-15
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 21/137 (15%)

Query: 634 IQLEYLDLS---------------------SNRLSNSIPRSLGNLVKLHYLNLSTNQFIQ 672
           +  E  D S                      N+L      +     +L  L++  N   +
Sbjct: 4   VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 673 EIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGL 732
             P   +KL  L  L+L HN L +          +L  L+L  N++       F +   L
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123

Query: 733 LYIDISYNELHGPIPNS 749
           + +D+S+N L      +
Sbjct: 124 ITLDLSHNGLSSTKLGT 140

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.4 bits (160), Expect = 6e-11
 Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 1/136 (0%)

Query: 85  NSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFS 144
           N++             +      HL  L+L+ N    I      ++ +LK +DL  N+ +
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573

Query: 145 GTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGH-LSYIEALHLFKNQLSGPIPHEVGGLS 203
                   N   LK L L  N  +       G     +  L +  N            ++
Sbjct: 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVN 633

Query: 204 SLNELALTSNFLKGSI 219
            +NE       L    
Sbjct: 634 WINETHTNIPELSSHY 649

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  353 bits (907), Expect = e-111
 Identities = 97/616 (15%), Positives = 201/616 (32%), Gaps = 87/616 (14%)

Query: 126 QIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALH 185
            + +  ++  L L     SG +P  IG L+ L+ L L ++                    
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF----------- 124

Query: 186 LFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLG--NLTNLAILYLHNNSLSGSI 243
                     P  +    S  +        + +        + ++L    ++++    SI
Sbjct: 125 ---------GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI 175

Query: 244 PSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSI 303
                     + +   +N +   +   +  LT L   Y+ N+ F +    E    ++   
Sbjct: 176 KKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY 234

Query: 304 LELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSI 363
                 +   +  L   NL +L  + +Y       +P+ +  L  +  + +A N   S  
Sbjct: 235 -----AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS-- 287

Query: 364 PHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKL-SGSIPHSLGNLTNLA 422
                           +        ++    + +  + +  N L +  +  SL  +  L 
Sbjct: 288 --------------GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLG 333

Query: 423 ILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGV 482
           +L    N L G +P   G+   L  L L  N+++   ++  G    +  L+   N L  +
Sbjct: 334 MLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI 392

Query: 483 IPE-ELGNLVKLTMLTLSDNQLQGSIPN--------LRNLTNLIRLRLNRNHLTCNISES 533
               +  ++  ++ +  S N++                   N+  + L+ N ++    E 
Sbjct: 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL 452

Query: 534 FGIHPKLTFIDLSHNNF-------YGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSS 586
           F     L+ I+L  N             + ++     L + D+   N +  L  +   ++
Sbjct: 453 FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR-FNKLTKLSDDFRATT 511

Query: 587 --QLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSN 644
              L  IDLS N    K P++    S+L    +R                     D   N
Sbjct: 512 LPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQ------------------RDAQGN 552

Query: 645 RLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICN 704
           R     P  +     L  L + +N  I+++  K+    ++S LD+  N       S +C 
Sbjct: 553 RTLREWPEGITLCPSLTQLQIGSND-IRKVNEKI--TPNISVLDIKDNPNISIDLSYVCP 609

Query: 705 MRSLEMLNLSHNNLSD 720
                M  L ++   D
Sbjct: 610 YIEAGMYMLFYDKTQD 625

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  330 bits (847), Expect = e-102
 Identities = 95/565 (16%), Positives = 171/565 (30%), Gaps = 71/565 (12%)

Query: 222 SLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCG----SIPLFLGNLTNL 277
           SL +   +  L L     SG +P  IG L  L  LALG++          P  +    + 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 278 DTLYLRNNSFSSSIPSEIGNLK--SLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSL 335
           +        +  +            L    +  +    SI  S         +   +N++
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 336 SGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLK 395
           +  +   +  L  L    + ++   +          N             +   +  NLK
Sbjct: 196 T-FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS-----EYAQQYKTEDLKWDNLK 249

Query: 396 SLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLL--------GSIPREIGNLKSLFE 447
            L+++++        +P  L  L  + ++ +  N  +             +    + +  
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 448 LQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSI 507
           + +G N L                        +  +   L  + KL ML    NQL+G +
Sbjct: 310 IYIGYNNLK-----------------------TFPVETSLQKMKKLGMLECLYNQLEGKL 346

Query: 508 PNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYG-QISSDWGKCPNLGT 566
           P   +   L  L L  N +T   +   G   ++  +  +HN         D      +  
Sbjct: 347 PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSA 406

Query: 567 FDVSVNNI-------IGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRR 619
            D S N I          L P       +  I+LS N I           S L  + L  
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466

Query: 620 NQL-------FGQLPSELGSLIQLEYLDLSSNRLSNSIPRSL--GNLVKLHYLNLSTNQF 670
           N L                +   L  +DL  N+L+  +        L  L  ++LS N F
Sbjct: 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSF 525

Query: 671 IQEIP------IKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPR 724
             + P        L+     ++ D   N   +E P  I    SL  L +  N++      
Sbjct: 526 -SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNE- 583

Query: 725 CFEEMNGLLYIDISYNELHGPIPNS 749
             +    +  +DI  N       + 
Sbjct: 584 --KITPNISVLDIKDNPNISIDLSY 606

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  258 bits (660), Expect = 2e-75
 Identities = 69/417 (16%), Positives = 142/417 (34%), Gaps = 46/417 (11%)

Query: 112 LDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRI 171
            + +  Q +     +  N+  L  +++ +      +P  +  L  ++ + ++ N+     
Sbjct: 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS-- 287

Query: 172 PPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLK-GSIPPSLGNLTNLA 230
                           + +       +      +  + +  N LK   +  SL  +  L 
Sbjct: 288 --------------GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLG 333

Query: 231 ILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSS- 289
           +L    N L G +P   G+   L+SL L  N++      F G    ++ L   +N     
Sbjct: 334 MLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI 392

Query: 290 SIPSEIGNLKSLSILELGENRLNG-------SIPLSLGNLTNLDTLYLYTNSLSGSIPSE 342
               +  ++  +S ++   N +          +  +     N+ ++ L  N +S      
Sbjct: 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL 452

Query: 343 IGNLKSLSGLELADNELSS-------SIPHYLGNLTNLAAFYLYKNSLSGSIPSEI--GN 393
                 LS + L  N L+               N   L +  L  N L+  +  +     
Sbjct: 453 FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATT 511

Query: 394 LKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLH------SNTLLGSIPREIGNLKSLFE 447
           L  L  +DLS N  S   P    N + L    +        N  L   P  I    SL +
Sbjct: 512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570

Query: 448 LQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ 504
           LQ+G N +   ++  +    ++++L + DN    +    +   ++  M  L  ++ Q
Sbjct: 571 LQIGSNDIR-KVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  306 bits (784), Expect = 9e-91
 Identities = 97/626 (15%), Positives = 192/626 (30%), Gaps = 81/626 (12%)

Query: 112 LDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRI 171
            + +++         + N  ++  L L+     G +P  IG L+ LK L    +  +   
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 172 PPQIGHLSYIEALHLFKNQLSGPIPHEVGG-LSSLNELALTSNFLKGSIPPSLGNLTNLA 230
                     +     K+++              LN   L  + +  +  P +  +   +
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN--PEMKPIKKDS 421

Query: 231 ILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSS 290
            + L +  +                     N++   I   +  LT L  +Y  N+ F+  
Sbjct: 422 RISLKDTQIGNL-----------------TNRI-TFISKAIQRLTKLQIIYFANSPFTYD 463

Query: 291 IPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLS 350
             +      +         +   +  LS  NL +L  + LY       +P  + +L  L 
Sbjct: 464 NIAVDWEDANSD-----YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518

Query: 351 GLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSG- 409
            L +A N   S       + T               +  +      +    +  N L   
Sbjct: 519 SLNIACNRGIS-AAQLKADWTR--------------LADDEDTGPKIQIFYMGYNNLEEF 563

Query: 410 SIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHM 469
               SL  +  L +L    N +        G    L +L+L  N++             +
Sbjct: 564 PASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQV 621

Query: 470 TLLALYDNALSGVIPE-ELGNLVKLTMLTLSDNQLQGSIPNL------RNLTNLIRLRLN 522
             L    N L  +       ++  +  +  S N++     N+          N   + L+
Sbjct: 622 EGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681

Query: 523 RNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEI 582
            N +    +E F     ++ I LS+N     I                  N +       
Sbjct: 682 YNEIQKFPTELFATGSPISTIILSNNLM-TSIPE----------------NSLKPKDGNY 724

Query: 583 GDSSQLHVIDLSANHIIGKIPSEI--GKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLD 640
            ++  L  IDL  N +   +  +     L  L  + +  N      P++  +  QL+   
Sbjct: 725 KNTYLLTTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFG 782

Query: 641 L------SSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFL 694
           +        NR+    P  +     L  L + +N  I+++  KL     L  LD++ N  
Sbjct: 783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKL--TPQLYILDIADNPN 839

Query: 695 GKEIPSQICNMRSLEMLNLSHNNLSD 720
                + +C      M  L ++   D
Sbjct: 840 ISIDVTSVCPYIEAGMYVLLYDKTQD 865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  302 bits (775), Expect = 2e-89
 Identities = 101/616 (16%), Positives = 203/616 (32%), Gaps = 55/616 (8%)

Query: 189 NQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIG 248
            + +  I       +    L   +         +  +  N        +        ++ 
Sbjct: 262 KETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFN-KELDMWGDQPGVDLD 320

Query: 249 NLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGE 308
           N   ++ L+L      G +P  +G LT L  L    +S + S         +  + E  +
Sbjct: 321 NNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380

Query: 309 NRLNGSIP-LSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELS------S 361
           +R+      + L     L+   L  ++++ +   E+  +K  S + L D ++       +
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQDAINRN--PEMKPIKKDSRISLKDTQIGNLTNRIT 438

Query: 362 SIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNL 421
            I   +  LT L   Y   +  +    +         + +    K   +   S  NL +L
Sbjct: 439 FISKAIQRLTKLQIIYFANSPFTYDNIAV-----DWEDANSDYAKQYENEELSWSNLKDL 493

Query: 422 AILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLS---------NSISHSLGNLTHMTLL 472
             + L++   +  +P  + +L  L  L +  N+             ++        + + 
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553

Query: 473 ALYDNALSGVIPE-ELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNIS 531
            +  N L        L  +VKL +L    N+++  +        L  L+L+ N +     
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIEEIPE 612

Query: 532 ESFGIHPKLTFIDLSHNNFYG-QISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS----- 585
           +      ++  +  SHN         +      +G+ D S  N IGS    I  S     
Sbjct: 613 DFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFS-YNKIGSEGRNISCSMDDYK 671

Query: 586 -SQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQL-------FGQLPSELGSLIQLE 637
                 + LS N I           S +  +IL  N +                +   L 
Sbjct: 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731

Query: 638 YLDLSSNRLSNSIPRSL--GNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSH---- 691
            +DL  N+L+ S+        L  L  +++S N F    P +      L    + H    
Sbjct: 732 TIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDA 789

Query: 692 --NFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL-HGPIPN 748
             N + ++ P+ I    SL  L +  N++        +    L  +DI+ N      + +
Sbjct: 790 EGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE---KLTPQLYILDIADNPNISIDVTS 846

Query: 749 STAFSDALMEALQGNE 764
              + +A M  L  ++
Sbjct: 847 VCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  240 bits (615), Expect = 2e-67
 Identities = 75/526 (14%), Positives = 158/526 (30%), Gaps = 59/526 (11%)

Query: 46  TSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSS 105
           T          L               +  +  ++  R+N  +L    +           
Sbjct: 360 TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP---EMKP 416

Query: 106 FPHLAYLDLQVNQIFGI------IPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKF 159
               + + L+  QI  +      I   I  ++KL+ +  +++ F+               
Sbjct: 417 IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED----- 471

Query: 160 LYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKG-- 217
                 +          +L  +  + L+       +P  +  L  L  L +  N      
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531

Query: 218 -------SIPPSLGNLTNLAILYLHNNSLSGSIPS-EIGNLKSLSSLALGNNKLCGSIPL 269
                   +         + I Y+  N+L     S  +  +  L  L   +NK+   +  
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-RHLEA 590

Query: 270 FLGNLTNLDTLYLRNNSFSSSIPSEIG-NLKSLSILELGENRLNGSIP--LSLGNLTNLD 326
           F G    L  L L  N     IP +       +  L    N+L   IP   +  ++  + 
Sbjct: 591 F-GTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMG 647

Query: 327 TLYLYTNSLSG-----SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKN 381
           ++    N +       S   +     + S + L+ NE+           + ++   L  N
Sbjct: 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707

Query: 382 SLS-------GSIPSEIGNLKSLSNLDLSENKLSGSIPHSL--GNLTNLAILYLHSNTLL 432
            ++               N   L+ +DL  NKL+ S+        L  L+ + +  N   
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYN-CF 765

Query: 433 GSIPREIGNLKSLFELQL------GDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEE 486
            S P +  N   L    +        N++       +     +  L +  N +   + E+
Sbjct: 766 SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEK 824

Query: 487 LGNLVKLTMLTLSDNQL-QGSIPNLRNL--TNLIRLRLNRNHLTCN 529
           L    +L +L ++DN      + ++       +  L  ++      
Sbjct: 825 L--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRG 868

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  297 bits (763), Expect = 3e-90
 Identities = 117/552 (21%), Positives = 193/552 (34%), Gaps = 30/552 (5%)

Query: 218 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNL 277
            IP +L    +   L L  N L         +   L  L L   ++         +L++L
Sbjct: 21  KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 278 DTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSL-S 336
            TL L  N   S        L SL  L   E  L       +G+L  L  L +  N + S
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 337 GSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAF----YLYKNSLSGSIPSEIG 392
             +P    NL +L  L+L+ N++ S     L  L  +        L  N ++   P    
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 393 NLKSLSNLDLSENKLSGSIP-HSLGNLTNLAILYLHSNTLLGSIPRE---IGNLKSLFEL 448
            +  L  L L  N  S ++    +  L  L +  L           E      L+ L  L
Sbjct: 199 EI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 449 QLGDNKLS------NSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQ 502
            + + +L+      + I      LT+++  +L    +  V             L L + +
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCK 315

Query: 503 LQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHN--NFYGQISSDWGK 560
                     L +L RL    N      + S    P L F+DLS N  +F G  S     
Sbjct: 316 FGQFPTL--KLKSLKRLTFTSNKG--GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 561 CPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRR 619
             +L   D+S N +I  +        QL  +D   +++       +   L +LI L +  
Sbjct: 372 TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 620 NQLFGQLPSELGSLIQLEYLDLSSNRLSNSI-PRSLGNLVKLHYLNLSTNQFIQEIPIKL 678
                        L  LE L ++ N    +  P     L  L +L+LS  Q  Q  P   
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490

Query: 679 EKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLL-YIDI 737
             L  L  L++SHN            + SL++L+ S N++     +  +     L ++++
Sbjct: 491 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 550

Query: 738 SYNELHGPIPNS 749
           + N+      + 
Sbjct: 551 TQNDFACTCEHQ 562

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  296 bits (761), Expect = 5e-90
 Identities = 120/535 (22%), Positives = 189/535 (35%), Gaps = 24/535 (4%)

Query: 203 SSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNK 262
            S   L L+ N L+     S  +   L +L L    +         +L  LS+L L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 263 LCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNG-SIPLSLGN 321
           +          L++L  L     + +S     IG+LK+L  L +  N +    +P    N
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 322 LTNLDTLYLYTNSLSGSIPSEIGNLKSLS----GLELADNELSSSIPHYLGNLTNLAAFY 377
           LTNL+ L L +N +     +++  L  +      L+L+ N ++   P     +  L    
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLT 206

Query: 378 LYKNSLSGSIPSE-IGNLKSLSNLDLSENKLSGS------IPHSLGNLTNLAILYLHSNT 430
           L  N  S ++    I  L  L    L   +             +L  L NL I       
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 431 L---LGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEEL 487
           L   L  I      L ++    L    +      S         L L +         +L
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQFPTLKL 324

Query: 488 GNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSH 547
            +L +LT  +        S  +L +L  L  L  N        S+S      L ++DLS 
Sbjct: 325 KSLKRLTFTSNKGGNA-FSEVDLPSLEFL-DLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 548 NNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEI-GDSSQLHVIDLSANHIIGKIPSEI 606
           N     +SS++     L   D   +N+       +      L  +D+S  H         
Sbjct: 383 NGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 607 GKLSSLIKLILRRNQLFGQLPSE-LGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNL 665
             LSSL  L +  N        +    L  L +LDLS  +L    P +  +L  L  LN+
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 666 STNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNM-RSLEMLNLSHNNLS 719
           S N F        + L  L  LD S N +      ++ +   SL  LNL+ N+ +
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  294 bits (755), Expect = 4e-89
 Identities = 130/612 (21%), Positives = 205/612 (33%), Gaps = 53/612 (8%)

Query: 123 IPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIE 182
           IP  +      K LDLS N           +   L+ L LS  +           LS++ 
Sbjct: 22  IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 183 ALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSL-SG 241
            L L  N +         GLSSL +L      L       +G+L  L  L + +N + S 
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 242 SIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLD----TLYLRNNSFSSSIPSEIGN 297
            +P    NL +L  L L +NK+       L  L  +     +L L  N  +   P     
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

Query: 298 LKSLSILELGENRLNGSIP-LSLGNLTNLDTLYLYTNSLSGS------IPSEIGNLKSLS 350
           +  L  L L  N  + ++    +  L  L+   L                S +  L +L+
Sbjct: 200 I-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 351 GLELADNELSSS---IPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKL 407
             E     L      I      LTN+++F L   ++               +L+L   K 
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKF 316

Query: 408 SGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLT 467
                  L +L  L             +     +L SL  L L  N LS           
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEV-----DLPSLEFLDLSRNGLS----------- 360

Query: 468 HMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLT 527
                        G   +       L  L LS N +     N   L  L  L    ++L 
Sbjct: 361 -----------FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 409

Query: 528 CNISES-FGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEI-GDS 585
                S F     L ++D+SH +     +  +    +L    ++ N+   +  P+I  + 
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 586 SQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNR 645
             L  +DLS   +    P+    LSSL  L +  N  F         L  L+ LD S N 
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529

Query: 646 LSNSIPRSLGNLVK-LHYLNLSTNQFIQEIPIK--LEKLIHLSELDLSHNFLGKEIPSQI 702
           +  S  + L +    L +LNL+ N F      +  L+ +    +L +    +    PS  
Sbjct: 530 IMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 589

Query: 703 CNMRSLEMLNLS 714
             M  +  LN++
Sbjct: 590 QGM-PVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  286 bits (734), Expect = 3e-86
 Identities = 126/569 (22%), Positives = 212/569 (37%), Gaps = 33/569 (5%)

Query: 97  TLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSM 156
            L  +SF SFP L  LDL   +I  I      ++S L  L L+ N            LS 
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101

Query: 157 LKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQL-SGPIPHEVGGLSSLNELALTSNFL 215
           L+ L       +      IGHL  ++ L++  N + S  +P     L++L  L L+SN +
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 216 KGSIPPSLGNLTNLAI----LYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIP-LF 270
           +      L  L  + +    L L  N ++   P     +  L  L L NN    ++    
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTC 220

Query: 271 LGNLTNLDTLYLRNNSFSSS------IPSEIGNLKSLSILELGENRLNGS---IPLSLGN 321
           +  L  L+   L    F +         S +  L +L+I E     L+     I      
Sbjct: 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280

Query: 322 LTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKN 381
           LTN+ +  L + ++                LEL + +        L +L       L   
Sbjct: 281 LTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKR-----LTFT 333

Query: 382 SLSGSIPSEIGNLKSLSNLDLSENKLS--GSIPHSLGNLTNLAILYLHSNTLLGSIPREI 439
           S  G       +L SL  LDLS N LS  G    S    T+L  L L  N  + ++    
Sbjct: 334 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNF 392

Query: 440 GNLKSLFELQLGDNKLSNSISHS-LGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTL 498
             L+ L  L    + L      S   +L ++  L +               L  L +L +
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

Query: 499 SDNQLQGSIP--NLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISS 556
           + N  Q +        L NL  L L++  L      +F     L  +++SHNNF+   + 
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 512

Query: 557 DWGKCPNLGTFDVSVNNIIGSLPPEIGDS-SQLHVIDLSANHIIGKIPSE--IGKLSSLI 613
            +    +L   D S+N+I+ S   E+    S L  ++L+ N        +  +  +    
Sbjct: 513 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQR 572

Query: 614 KLILRRNQLFGQLPSELGSLIQLEYLDLS 642
           +L++   ++    PS+   +  +  L+++
Sbjct: 573 QLLVEVERMECATPSDKQGM-PVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  231 bits (591), Expect = 5e-66
 Identities = 96/491 (19%), Positives = 164/491 (33%), Gaps = 44/491 (8%)

Query: 273 NLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYT 332
            + N+    +  N     IP  +    S   L+L  N L      S  +   L  L L  
Sbjct: 6   VVPNITYQCMELNF--YKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR 61

Query: 333 NSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIG 392
             +         +L  LS L L  N + S        L++L      + +L+      IG
Sbjct: 62  CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 121

Query: 393 NLKSLSNLDLSENKL-SGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSL----FE 447
           +LK+L  L+++ N + S  +P    NLTNL  L L SN +      ++  L  +      
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 448 LQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEE-LGNLVKLTMLTLSDNQLQGS 506
           L L  N ++  I         +  L L +N  S  + +  +  L  L +  L   + +  
Sbjct: 182 LDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 507 I----PNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCP 562
                 +   L  L  L +    L                     + +   I   +    
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYL------------------DYYLDDIIDLFNCLT 282

Query: 563 NLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQL 622
           N+ +F +    I          +     ++L           ++  L  L     +    
Sbjct: 283 NVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340

Query: 623 FGQLPSELGSLIQLEYLDLSSNRLS--NSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEK 680
           F         L  LE+LDLS N LS      +S      L YL+LS N  +  +      
Sbjct: 341 FS-----EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLG 394

Query: 681 LIHLSELDLSHNFLGKEIPSQI-CNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISY 739
           L  L  LD  H+ L +     +  ++R+L  L++SH +        F  ++ L  + ++ 
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 740 NELHGPIPNST 750
           N          
Sbjct: 455 NSFQENFLPDI 465

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  185 bits (472), Expect = 6e-50
 Identities = 69/400 (17%), Positives = 133/400 (33%), Gaps = 24/400 (6%)

Query: 83  RVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFG---IIPPQIGNISKLKYLDLS 139
           R++ + L N      +          L    L + +      +       +  L  L + 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 140 SNSFS------GTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSG 193
               +        I      L+ +    L +            +    + L L   +   
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQ 318

Query: 194 PIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLS--GSIPSEIGNLK 251
               ++  L  L          KG    S  +L +L  L L  N LS  G          
Sbjct: 319 FPTLKLKSLKRLT-----FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373

Query: 252 SLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENR 310
           SL  L L  N +      FL  L  L+ L  ++++        +  +L++L  L++    
Sbjct: 374 SLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 311 LNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI-GNLKSLSGLELADNELSSSIPHYLGN 369
              +       L++L+ L +  NS   +   +I   L++L+ L+L+  +L    P    +
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 370 LTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNL-TNLAILYLHS 428
           L++L    +  N+           L SL  LD S N +  S    L +  ++LA L L  
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552

Query: 429 NTLLGSIPRE--IGNLKSLFELQLGDNKLSNSISHSLGNL 466
           N    +   +  +  +K   +L +   ++  +       +
Sbjct: 553 NDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM 592

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  170 bits (433), Expect = 7e-45
 Identities = 68/398 (17%), Positives = 131/398 (32%), Gaps = 46/398 (11%)

Query: 369 NLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHS 428
            + N+    +  N     IP  +    S  NLDLS N L     +S  +   L +L L  
Sbjct: 6   VVPNITYQCMELNFYK--IPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR 61

Query: 429 NTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELG 488
             +         +L  L  L L  N + +    +   L+ +  L   +  L+ +    +G
Sbjct: 62  CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 121

Query: 489 NLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHN 548
           +L  L  L ++ N +Q                         + E F     L  +DLS N
Sbjct: 122 HLKTLKELNVAHNLIQSF----------------------KLPEYFSNLTNLEHLDLSSN 159

Query: 549 NFYGQISSDWGKCPNLGTFDVSVN---NIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSE 605
                  +D      +   ++S++   N +  + P      +LH + L  N     +   
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT 219

Query: 606 -IGKLSSLIKLILRRNQLFGQ---LPSELGSLIQLEYLDLSSNRLS------NSIPRSLG 655
            I  L+ L    L   +   +      +  +L  L  L +   RL+      + I     
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279

Query: 656 NLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSH 715
            L  +   +L +    +              L+L +   G+    ++ +++ L   +   
Sbjct: 280 CLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 337

Query: 716 NNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFS 753
            N    +     ++  L ++D+S N L      S +  
Sbjct: 338 GNAFSEV-----DLPSLEFLDLSRNGLSFKGCCSQSDF 370

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  286 bits (734), Expect = 4e-86
 Identities = 114/603 (18%), Positives = 199/603 (33%), Gaps = 59/603 (9%)

Query: 77  HCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYL 136
            C       + N  N+GL    ++   +       L+   N +  I       +  L +L
Sbjct: 7   KCIEKEVNKTYNCENLGL----NEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFL 62

Query: 137 DLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIP 196
           DL+             +   L  L L+AN         +     ++ L   +  +S    
Sbjct: 63  DLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF 122

Query: 197 HEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLS-- 254
             +    +L  L L SN +     P       L +L   NN++      ++ +L+  +  
Sbjct: 123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182

Query: 255 SLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGN--LKSLSILELGENRLN 312
           SL L  N +   I     +     +L          I   + N  ++SL +    +    
Sbjct: 183 SLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241

Query: 313 GSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTN 372
              P     L  +    +                       L  +   +   +     + 
Sbjct: 242 DISPAVFEGLCEMSVESIN----------------------LQKHYFFNISSNTFHCFSG 279

Query: 373 LAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLL 432
           L    L    LS  +PS +  L +L  L LS NK       S  N  +L  L +  NT  
Sbjct: 280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338

Query: 433 GSIPRE-IGNLKSLFELQLGDNKLSNS--ISHSLGNLTHMTLLALYDNALSGVIPEELGN 489
             +    + NL++L EL L  + +  S   +  L NL+H+  L L  N    +  E    
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398

Query: 490 LVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSH 547
             +L +L L+  +L+        +NL  L  L L+ + L  +  + F   P L  ++L  
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458

Query: 548 NNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIG 607
           N+F                               +    +L ++ LS   +         
Sbjct: 459 NHFPK---------------------GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497

Query: 608 KLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLST 667
            L  +  + L  N+L       L  L  + YL+L+SN +S  +P  L  L +   +NL  
Sbjct: 498 SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQ 556

Query: 668 NQF 670
           N  
Sbjct: 557 NPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  284 bits (730), Expect = 2e-85
 Identities = 120/574 (20%), Positives = 204/574 (35%), Gaps = 40/574 (6%)

Query: 158 KFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKG 217
           K         +  IP  +   +  E L    N L          L +L  L LT   +  
Sbjct: 15  KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 218 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNL 277
               +  +   L  L L  N L     + +   K+L  L      +     + L N   L
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131

Query: 278 DTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLS- 336
           ++LYL +N  SS    +    + L +L+   N ++      + +L     L L  N    
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191

Query: 337 GSIPSEIGNLKSLSGLELADNELSSSIPHYLGN--LTNLAAFYLYKNSLSGSIPSEIGNL 394
             I     +      L     +    I   L N  + +L              P+    L
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 395 KSLS--NLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGD 452
             +S  +++L ++       ++    + L  L L +   L  +P  +  L +L +L L  
Sbjct: 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSA 310

Query: 453 NKLSNSISHSLGNLTHMTLLALYDNALSGVIPEE-LGNLVKLTMLTLSDNQLQGSIPN-- 509
           NK  N    S  N   +T L++  N     +    L NL  L  L LS + ++ S     
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370

Query: 510 -LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFD 568
            LRNL++L  L L+ N      +E+F   P+L  +DL+                    F 
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV--------KDAQSPF- 421

Query: 569 VSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQL---FGQ 625
                          +   L V++LS + +          L +L  L L+ N       Q
Sbjct: 422 --------------QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467

Query: 626 LPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLS 685
             + L +L +LE L LS   LS+    +  +L  +++++LS N+        L  L  + 
Sbjct: 468 KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI- 526

Query: 686 ELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLS 719
            L+L+ N +   +PS +  +     +NL  N L 
Sbjct: 527 YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  280 bits (719), Expect = 5e-84
 Identities = 108/540 (20%), Positives = 190/540 (35%), Gaps = 17/540 (3%)

Query: 218 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNL 277
            IP +L    +   L    N L     +    L +L+ L L   ++         +   L
Sbjct: 26  EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRL 83

Query: 278 DTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSG 337
           DTL L  N       + +   K+L  L   +  ++    + L N   L++LYL +N +S 
Sbjct: 84  DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS 143

Query: 338 SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLS-GSIPSEIGNLKS 396
               +    + L  L+  +N +       + +L       L  N      I     +   
Sbjct: 144 IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV 203

Query: 397 LSNLDLSENKLSGSIPHSLGN--LTNLAILYLHSNTLLGSIPREIGNLK--SLFELQLGD 452
             +L+    +    I   L N  + +L +            P     L   S+  + L  
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263

Query: 453 NKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN-LR 511
           +   N  S++    + +  L L    LS  +P  L  L  L  L LS N+ +        
Sbjct: 264 HYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISAS 322

Query: 512 NLTNLIRLRLNRNHLTCNI-SESFGIHPKLTFIDLSHNNFYGQISSD--WGKCPNLGTFD 568
           N  +L  L +  N     + +        L  +DLSH++       +       +L + +
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382

Query: 569 VSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIP-SEIGKLSSLIKLILRRNQLFGQLP 627
           +S N  +        +  QL ++DL+   +  K   S    L  L  L L  + L     
Sbjct: 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442

Query: 628 SELGSLIQLEYLDLSSNRLSNSI---PRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHL 684
                L  L++L+L  N           SL  L +L  L LS              L  +
Sbjct: 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502

Query: 685 SELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHG 744
           + +DLSHN L       + +++ +  LNL+ N++S  +P     ++    I++  N L  
Sbjct: 503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  264 bits (676), Expect = 8e-78
 Identities = 105/531 (19%), Positives = 182/531 (34%), Gaps = 40/531 (7%)

Query: 255 SLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGS 314
           +    N  L   IP  L    + + L    N   +   +    L +L+ L+L   ++   
Sbjct: 16  TYNCENLGL-NEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 315 IPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLA 374
              +  +   LDTL L  N L     + +   K+L  L      +SS     L N   L 
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 375 AFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLH-SNTLLG 433
           + YL  N +S     +    + L  LD   N +       + +L     L L+ +   + 
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192

Query: 434 SIPREIGNLKSLFELQLGDNKLSNSISHSLGNLT-------------------------- 467
            I     +      L  G  +    I   L N T                          
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252

Query: 468 --HMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNH 525
              +  + L  +    +          L  L L+   L      L  L+ L +L L+ N 
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK 312

Query: 526 LTCNISESFGIHPKLTFIDLSHNNFYGQISSDW-GKCPNLGTFDVSVNNI--IGSLPPEI 582
                  S    P LT + +  N    ++ +       NL   D+S ++I        ++
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372

Query: 583 GDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLP-SELGSLIQLEYLDL 641
            + S L  ++LS N  +        +   L  L L   +L  +   S   +L  L+ L+L
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432

Query: 642 SSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIK---LEKLIHLSELDLSHNFLGKEI 698
           S + L  S  +    L  L +LNL  N F +    K   L+ L  L  L LS   L    
Sbjct: 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492

Query: 699 PSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS 749
                +++ +  ++LSHN L+         +   +Y++++ N +   +P+ 
Sbjct: 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK-GIYLNLASNHISIILPSL 542

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  275 bits (706), Expect = 1e-85
 Identities = 85/279 (30%), Positives = 127/279 (45%), Gaps = 7/279 (2%)

Query: 162 LSANQFSGRIPPQIGHLSYIEALHLFKNQLSG--PIPHEVGGLSSLNELALTS-NFLKGS 218
                + G +         +  L L    L    PIP  +  L  LN L +   N L G 
Sbjct: 33  CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP 92

Query: 219 IPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLD 278
           IPP++  LT L  LY+ + ++SG+IP  +  +K+L +L    N L G++P  + +L NL 
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152

Query: 279 TLYLRNNSFSSSIPSEIGNLKSLS-ILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSG 337
            +    N  S +IP   G+   L   + +  NRL G IP +  NL NL  + L  N L G
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEG 211

Query: 338 SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSL 397
                 G+ K+   + LA N L+  +   +G   NL    L  N + G++P  +  LK L
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270

Query: 398 SNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIP 436
            +L++S N L G IP   GNL    +    +N  L   P
Sbjct: 271 HSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  272 bits (699), Expect = 1e-84
 Identities = 97/311 (31%), Positives = 143/311 (45%), Gaps = 14/311 (4%)

Query: 36  EEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCN---HVGRVNSINLTNV 92
           ++  ALL+ K  L N    + L SW     T      W G+ C+      RVN+++L+ +
Sbjct: 6   QDKQALLQIKKDLGNP---TTLSSW--LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60

Query: 93  GLKGTLH-DFSFSSFPHLAYLDLQ-VNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQ 150
            L        S ++ P+L +L +  +N + G IPP I  +++L YL ++  + SG IP  
Sbjct: 61  NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120

Query: 151 IGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNE-LA 209
           +  +  L  L  S N  SG +PP I  L  +  +    N++SG IP   G  S L   + 
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180

Query: 210 LTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPL 269
           ++ N L G IPP+  NL NLA + L  N L G      G+ K+   + L  N L   +  
Sbjct: 181 ISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG- 238

Query: 270 FLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLY 329
            +G   NL+ L LRNN    ++P  +  LK L  L +  N L G IP   GNL   D   
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSA 297

Query: 330 LYTNSLSGSIP 340
              N      P
Sbjct: 298 YANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  250 bits (640), Expect = 4e-76
 Identities = 75/292 (25%), Positives = 123/292 (42%), Gaps = 10/292 (3%)

Query: 290 SIPSEIGNLKSLS----ILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGS--IPSEI 343
            I  ++GN  +LS      +       G +  +      ++ L L   +L     IPS +
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 344 GNLKSLSGLELAD-NELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDL 402
            NL  L+ L +   N L   IP  +  LT L   Y+   ++SG+IP  +  +K+L  LD 
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132

Query: 403 SENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFE-LQLGDNKLSNSISH 461
           S N LSG++P S+ +L NL  +    N + G+IP   G+   LF  + +  N+L+  I  
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192

Query: 462 SLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRL 521
           +  NL  +  + L  N L G      G+      + L+ N L   +  +    NL  L L
Sbjct: 193 TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDL 251

Query: 522 NRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN 573
             N +   + +       L  +++S NN  G+I    G          + N 
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  188 bits (479), Expect = 1e-53
 Identities = 65/274 (23%), Positives = 115/274 (41%), Gaps = 30/274 (10%)

Query: 523 RNHLTCNISESFGIHPKLTFIDLSHNNFYGQ--ISSDWGKCPNLGTFDVS-VNNIIGSLP 579
                  + ++     ++  +DLS  N      I S     P L    +  +NN++G +P
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 580 PEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYL 639
           P I   +QLH + ++  ++ G IP  + ++ +L+ L    N L G LP  + SL  L  +
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 640 DLSSNRLSNSIPRSLGNLVKLH-YLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEI 698
               NR+S +IP S G+  KL   + +S N+   +IP     L +L+ +DLS N L  + 
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDA 213

Query: 699 PSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYN------------------ 740
                + ++ + ++L+ N+L+  + +       L  +D+  N                  
Sbjct: 214 SVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272

Query: 741 ------ELHGPIPNSTAFSDALMEALQGNEGLCG 768
                  L G IP         + A   N+ LCG
Sbjct: 273 LNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  263 bits (675), Expect = 1e-77
 Identities = 111/544 (20%), Positives = 185/544 (34%), Gaps = 28/544 (5%)

Query: 218 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNL 277
            +P  +   ++   + L  N L         N   L  L L   ++          L +L
Sbjct: 25  KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL 82

Query: 278 DTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSG 337
             L L  N   S  P     L SL  L   E +L       +G L  L  L +  N +  
Sbjct: 83  SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142

Query: 338 -SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAF----YLYKNSLSGSIPSEIG 392
             +P+   NL +L  ++L+ N + +   + L  L           +  N +   I  +  
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAF 201

Query: 393 NLKSLSNLDLSENKLSGSIP-HSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLF----- 446
               L  L L  N  S +I    L NL  L +  L           EI     +      
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261

Query: 447 ---ELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQL 503
              E +L      +        L +++ ++L   ++  +  E++    K   L++   QL
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQL 319

Query: 504 QGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFY--GQISSDWGKC 561
           +   P L +L  L  L L  N  +  IS      P L+++DLS N     G  S      
Sbjct: 320 K-QFPTL-DLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT 375

Query: 562 PNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIP-SEIGKLSSLIKLILRRN 620
            +L   D+S  N    +        +L  +D   + +      S    L  L+ L +   
Sbjct: 376 NSLRHLDLS-FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434

Query: 621 QLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRS-LGNLVKLHYLNLSTNQFIQEIPIKLE 679
                       L  L  L ++ N   ++   +   N   L +L+LS  Q  Q      +
Sbjct: 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494

Query: 680 KLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISY 739
            L  L  L++SHN L     S    + SL  L+ S N +             L + +++ 
Sbjct: 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554

Query: 740 NELH 743
           N + 
Sbjct: 555 NSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  256 bits (656), Expect = 5e-75
 Identities = 119/571 (20%), Positives = 185/571 (32%), Gaps = 50/571 (8%)

Query: 106 FPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSAN 165
                 +DL  N +  +      N S+L++LDLS              L  L  L L+ N
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 166 QFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKG-SIPPSLG 224
                 P     L+ +E L   + +L+      +G L +L +L +  NF+    +P    
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 225 NLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRN 284
           NLTNL  + L  N +     +++  L+    +                      +L +  
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQV--------------------NLSLDMSL 190

Query: 285 NSFSSSIPSEIGNLKSLSILELGENRLNGSIP-LSLGNLTNLDTLYLYTNSLSGSIPSEI 343
           N     I  +      L  L L  N  + +I    L NL  L    L           EI
Sbjct: 191 NPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249

Query: 344 GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLS 403
                + GL                    +  F L   +       +   L ++S + L+
Sbjct: 250 FEPSIMEGLC----------------DVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293

Query: 404 ENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSL 463
              +       +        L +     L   P    +L  L  L L  NK   SIS   
Sbjct: 294 GVSIKY--LEDVPKHFKWQSLSIIRC-QLKQFP--TLDLPFLKSLTLTMNKG--SISFKK 346

Query: 464 GNLTHMTLLALYDNALSGVIPEELGNL--VKLTMLTLSDNQLQGSIPNLRNLTNLIRLRL 521
             L  ++ L L  NALS        +L    L  L LS N       N   L  L  L  
Sbjct: 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDF 406

Query: 522 NRNHLTCNISES-FGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPP 580
             + L      S F    KL ++D+S+ N        +    +L T  ++ N+   +   
Sbjct: 407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS 466

Query: 581 EI-GDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYL 639
            +  +++ L  +DLS   +          L  L  L +  N L     S    L  L  L
Sbjct: 467 NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL 526

Query: 640 DLSSNRLSNSIPRSLGNLVKLHYLNLSTNQF 670
           D S NR+  S          L + NL+ N  
Sbjct: 527 DCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  226 bits (579), Expect = 2e-64
 Identities = 107/514 (20%), Positives = 174/514 (33%), Gaps = 38/514 (7%)

Query: 97  TLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSM 156
           T+ D ++    HL+ L L  N I    P     ++ L+ L       +      IG L  
Sbjct: 70  TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129

Query: 157 LKFLYLSANQFSG-RIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLN----ELALT 211
           LK L ++ N     ++P    +L+ +  + L  N +     +++  L         L ++
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189

Query: 212 SNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSE-IGNLKSLSSLALGNNKLCGSIPLF 270
            N +   I         L  L L  N  S +I    + NL  L    L   +        
Sbjct: 190 LNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD----- 243

Query: 271 LGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLN--GSIPLSLGNLTNLDTL 328
                          +     PS +  L  ++I E      N      +    L N+  +
Sbjct: 244 -------------ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM 290

Query: 329 YLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIP 388
            L   S+      ++        L +   +L       L  L +L    L  N    SI 
Sbjct: 291 SLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSL---TLTMNKG--SIS 343

Query: 389 SEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLH-SNTLLGSIPREIGNLKSLFE 447
            +   L SLS LDLS N LS S   S  +L   ++ +L  S      +      L+ L  
Sbjct: 344 FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQH 403

Query: 448 LQLGDNKLSNSISHS-LGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGS 506
           L    + L      S   +L  +  L +               L  L  L ++ N  + +
Sbjct: 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463

Query: 507 IPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNL 564
             +    N TNL  L L++  L       F    +L  +++SHNN     SS + +  +L
Sbjct: 464 TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523

Query: 565 GTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHI 598
            T D S N I  S          L   +L+ N +
Sbjct: 524 STLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  192 bits (491), Expect = 2e-52
 Identities = 93/462 (20%), Positives = 151/462 (32%), Gaps = 49/462 (10%)

Query: 85  NSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLK----YLDLSS 140
             +N+ +  +        FS+  +L ++DL  N I  I    +  + +       LD+S 
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190

Query: 141 NSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGH-LSYIEALHLFKNQLSG------ 193
           N     I  Q      L  L L  N  S  I       L+ +    L   +         
Sbjct: 191 NPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249

Query: 194 PIPHEVGGLSSL--NELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLK 251
             P  + GL  +  +E  LT              L N++ + L   S+      ++    
Sbjct: 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHF 307

Query: 252 SLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRL 311
              SL++   +L         +L  L +L L  N    SI  +   L SLS L+L  N L
Sbjct: 308 KWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNAL 362

Query: 312 NGSIPLSLGNL--TNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGN 369
           + S   S  +L   +L  L L  N     + +    L+ L  L+   + L          
Sbjct: 363 SFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTE----- 416

Query: 370 LTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSN 429
                              S   +L+ L  LD+S              LT+L  L +  N
Sbjct: 417 ------------------FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458

Query: 430 TLLGSIPREI-GNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELG 488
           +   +    +  N  +L  L L   +L          L  + LL +  N L  +      
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518

Query: 489 NLVKLTMLTLSDNQLQGSIPN-LRNLTNLIRLRLNRNHLTCN 529
            L  L+ L  S N+++ S         +L    L  N + C 
Sbjct: 519 QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  175 bits (447), Expect = 1e-46
 Identities = 77/387 (19%), Positives = 137/387 (35%), Gaps = 28/387 (7%)

Query: 376 FYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSI 435
           +      LS  +P +I +  S  N+DLS N L     +S  N + L  L L    +    
Sbjct: 16  YQCMDQKLS-KVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 436 PREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTM 495
            +    L  L  L L  N + +    S   LT +  L   +  L+ +    +G L+ L  
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132

Query: 496 LTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISESF----GIHPKLTFIDLSHNN 549
           L ++ N +          NLTNL+ + L+ N++                    +D+S N 
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192

Query: 550 FYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS-SQLHVIDLSANHIIGKIPSEIGK 608
               I     +   L    +  N    ++      + + LHV  L       +   EI +
Sbjct: 193 I-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251

Query: 609 LS--------SLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKL 660
            S        ++ +  L     F     +   L  +  + L+   +       +    K 
Sbjct: 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKW 309

Query: 661 HYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSD 720
             L++   Q +++ P     L  L  L L+ N     I  +   + SL  L+LS N LS 
Sbjct: 310 QSLSIIRCQ-LKQFPT--LDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSF 364

Query: 721 FIPRCFEEMNG--LLYIDISYNELHGP 745
                + ++    L ++D+S+N     
Sbjct: 365 SGCCSYSDLGTNSLRHLDLSFNGAIIM 391

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  102 bits (257), Expect = 1e-22
 Identities = 43/187 (22%), Positives = 70/187 (37%), Gaps = 5/187 (2%)

Query: 576 GSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQ 635
           GSL P I     +         +  K+P +I   SS   + L  N L         +  +
Sbjct: 2   GSLNPCIEVVPNITY-QCMDQKL-SKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSE 57

Query: 636 LEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLG 695
           L++LDLS   +     ++   L  L  L L+ N      P     L  L  L      L 
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 696 KEIPSQICNMRSLEMLNLSHNNLSDF-IPRCFEEMNGLLYIDISYNELHGPIPNSTAFSD 754
                 I  + +L+ LN++HN +    +P  F  +  L+++D+SYN +     N   F  
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177

Query: 755 ALMEALQ 761
              +   
Sbjct: 178 ENPQVNL 184

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  220 bits (563), Expect = 2e-63
 Identities = 123/468 (26%), Positives = 208/468 (44%), Gaps = 36/468 (7%)

Query: 101 FSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFL 160
           F+ ++        L    +   +     ++ ++  L              +  L+ L  +
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQI 73

Query: 161 YLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIP 220
             S NQ +   P  + +L+ +  + +  NQ++   P  +  L++L  L L +N +    P
Sbjct: 74  NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP 129

Query: 221 PSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTL 280
             L NLTNL  L L +N++S    S +  L SL  L+ GN     +    L NLT L+ L
Sbjct: 130 --LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQV---TDLKPLANLTTLERL 182

Query: 281 YLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIP 340
            + +N  S    S +  L +L  L    N+++   P  LG LTNLD L L  N L     
Sbjct: 183 DISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--I 236

Query: 341 SEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNL 400
             + +L +L+ L+LA+N++S+  P  L  LT L    L  N +S   P  +  L +L+NL
Sbjct: 237 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNL 292

Query: 401 DLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSIS 460
           +L+EN+L    P  + NL NL  L L+ N +    P  + +L  L  L   +NK+S+   
Sbjct: 293 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--V 346

Query: 461 HSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLR 520
            SL NLT++  L+   N +S + P  L NL ++T L L+D     +  N +   ++    
Sbjct: 347 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 404

Query: 521 LNRNHLTCNISESFGIHPKLTFIDLSHNN--FYGQISSDWGKCPNLGT 566
            N        +         T  D++ N   +  ++S  + +   +G 
Sbjct: 405 KNVTGALIAPAT-ISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGK 451

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  212 bits (542), Expect = 1e-60
 Identities = 119/525 (22%), Positives = 205/525 (39%), Gaps = 65/525 (12%)

Query: 224 GNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLR 283
           G L +  I    +  ++         L       LG   +  ++     +L  + TL   
Sbjct: 1   GPLGSATIT--QDTPINQIFT--DTALAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQAD 54

Query: 284 NNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI 343
                S     +  L +L+ +    N+L    PL   NLT L  + +  N ++   P  +
Sbjct: 55  RLGIKS--IDGVEYLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--L 108

Query: 344 GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLS 403
            NL +L+GL L +N+++   P  L NLTNL    L  N++S    S +  L SL  L   
Sbjct: 109 ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG 164

Query: 404 ENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSL 463
            N+++   P  L NLT L  L + SN +  S    +  L +L  L   +N++S+     L
Sbjct: 165 -NQVTDLKP--LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--L 217

Query: 464 GNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNR 523
           G LT++  L+L  N L  +    L +L  LT L L++NQ+  ++  L  LT L  L+L  
Sbjct: 218 GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS-NLAPLSGLTKLTELKLGA 274

Query: 524 NHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIG 583
           N ++                            S       L   +++ N +       I 
Sbjct: 275 NQISN--------------------------ISPLAGLTALTNLELNENQLED--ISPIS 306

Query: 584 DSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSS 643
           +   L  + L  N+I    P  +  L+ L +L    N++     S L +L  + +L    
Sbjct: 307 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGH 362

Query: 644 NRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEI-PSQI 702
           N++S+  P  L NL ++  L L+   +            ++S  +   N  G  I P+ I
Sbjct: 363 NQISDLTP--LANLTRITQLGLNDQAWTNAPV---NYKANVSIPNTVKNVTGALIAPATI 417

Query: 703 CNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIP 747
            +  S    +++ N  S +        +  + I        G + 
Sbjct: 418 SDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  199 bits (507), Expect = 9e-56
 Identities = 114/471 (24%), Positives = 188/471 (39%), Gaps = 58/471 (12%)

Query: 279 TLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGS 338
               ++   +         L       LG+  +  ++  +  +L  + TL      +   
Sbjct: 6   ATITQDTPINQIFT--DTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-- 59

Query: 339 IPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLS 398
               +  L +L+ +  ++N+L+   P  L NLT L    +  N ++   P  + NL +L+
Sbjct: 60  SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLT 115

Query: 399 NLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNS 458
            L L  N+++   P  L NLTNL  L L SNT+  S    +  L SL +L  G+      
Sbjct: 116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFGNQVTDLK 171

Query: 459 ISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIR 518
               L NLT +  L +  N +S      L  L  L  L  ++NQ+   I  L  LTNL  
Sbjct: 172 ---PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS-DITPLGILTNLDE 225

Query: 519 LRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSL 578
           L LN N L  +I  +      LT +DL++N                          I +L
Sbjct: 226 LSLNGNQLK-DIG-TLASLTNLTDLDLANNQ-------------------------ISNL 258

Query: 579 PPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEY 638
            P +   ++L  + L AN I     S +  L++L  L L  NQL     S + +L  L Y
Sbjct: 259 AP-LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTY 313

Query: 639 LDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEI 698
           L L  N +S+  P  + +L KL  L    N+ + ++   L  L +++ L   HN +    
Sbjct: 314 LTLYFNNISDISP--VSSLTKLQRLFFYNNK-VSDVSS-LANLTNINWLSAGHNQISDLT 369

Query: 699 PSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS 749
           P  + N+  +  L L+    ++        ++    +      L  P   S
Sbjct: 370 P--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATIS 418

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  216 bits (551), Expect = 7e-61
 Identities = 112/561 (19%), Positives = 188/561 (33%), Gaps = 55/561 (9%)

Query: 203 SSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNK 262
            S   L L+ N L+     S  +   L +L L    +         +L  LS+L L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 263 LCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLN-GSIPLSLGN 321
           +          L++L  L     + +S     IG+LK+L  L +  N +    +P    N
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 322 LTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKN 381
           LTNL+ L L +N +     +++  L  +  L L+ +                    L  N
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD--------------------LSLN 187

Query: 382 SLSGSIPSEIGNLKSLSNLDLSENKLSGSIPH-SLGNLTNLAILYLHSNTLLGSIPREIG 440
            ++  I         L  L L  N  S ++    +  L  L +  L              
Sbjct: 188 PMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE------ 240

Query: 441 NLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGV---IPEELGNLVKLTMLT 497
                         L      +L  L ++T+       L      I +    L  ++  +
Sbjct: 241 ------------GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288

Query: 498 LSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSD 557
           L    ++  + +         L L         +        L  +  + N      S  
Sbjct: 289 LVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKL---KSLKRLTFTSNKGGNAFSEV 344

Query: 558 WGKCPNLGTFDVSVNNI--IGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKL 615
               P+L   D+S N +   G        ++ L  +DLS N +I  + S    L  L  L
Sbjct: 345 --DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 401

Query: 616 ILRRNQLFG-QLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEI 674
             + + L      S   SL  L YLD+S      +       L  L  L ++ N F +  
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461

Query: 675 PIK-LEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLL 733
                 +L +L+ LDLS   L +  P+   ++ SL++LN++ N L       F+ +  L 
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521

Query: 734 YIDISYNELHGPIPNSTAFSD 754
            I +  N      P     S 
Sbjct: 522 KIWLHTNPWDCSCPRIDYLSR 542

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  204 bits (522), Expect = 7e-57
 Identities = 108/512 (21%), Positives = 167/512 (32%), Gaps = 41/512 (8%)

Query: 106 FPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSAN 165
                 LDL  N +  +      +  +L+ LDLS             +LS L  L L+ N
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 166 QFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLK-GSIPPSLG 224
                       LS ++ L   +  L+      +G L +L EL +  N ++   +P    
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 225 NLTNLAILYLHNNSLSGSIPSEIGNLKSLS----SLALGNNKLCGSIPLFLGNLTNLDTL 280
           NLTNL  L L +N +     +++  L  +     SL L  N +   I         L  L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLHKL 205

Query: 281 YLRNNSFSSSIPSE-IGNLKSLSILELGENRLNGSIPLS------LGNLTNLDTLYLYTN 333
            LRNN  S ++    I  L  L +  L          L       L  L NL        
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 334 SLSGS---IPSEIGNLKSLSGLELADNELSSSIP-HYLGNLTNLAAFYLYKNSLS----- 384
            L      I      L ++S   L    +       Y     +L                
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK 325

Query: 385 ------------GSIPSEIGNLKSLSNLDLSENKLS--GSIPHSLGNLTNLAILYLHSNT 430
                       G+  SE+ +L SL  LDLS N LS  G    S    T+L  L L  N 
Sbjct: 326 SLKRLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN- 383

Query: 431 LLGSIPREIGNLKSLFELQLGDNKLSNSISHS-LGNLTHMTLLALYDNALSGVIPEELGN 489
            + ++      L+ L  L    + L      S   +L ++  L +               
Sbjct: 384 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443

Query: 490 LVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSH 547
           L  L +L ++ N  Q +        L NL  L L++  L      +F     L  ++++ 
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503

Query: 548 NNFYGQISSDWGKCPNLGTFDVSVNNIIGSLP 579
           N         + +  +L    +  N    S P
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  198 bits (505), Expect = 1e-54
 Identities = 124/567 (21%), Positives = 194/567 (34%), Gaps = 77/567 (13%)

Query: 123 IPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIE 182
           IP  +      K LDLS N           +   L+ L LS  +           +  IE
Sbjct: 22  IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-----------IQTIE 68

Query: 183 ALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGS 242
                              LS L+ L LT N ++     +   L++L  L     +L+  
Sbjct: 69  DGAY-------------QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115

Query: 243 IPSEIGNLKSLSSLALGNNKL-CGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSL 301
               IG+LK+L  L + +N +    +P +  NLTNL+ L L +N   S   +++  L  +
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

Query: 302 SI----LELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSE-IGNLKSLSGLELA- 355
            +    L+L  N +N  I         L  L L  N  S ++    I  L  L    L  
Sbjct: 176 PLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234

Query: 356 -----DNELSSSIPHYLGNLTNLAAFYLYKNSLSGS---IPSEIGNLKSLSNLDLSENKL 407
                +  L       L  L NL         L      I      L ++S+  L    +
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

Query: 408 SGSIPHS-LGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNL 466
                 S      +L ++                 LKSL  L    NK  N+   S  +L
Sbjct: 295 ERVKDFSYNFGWQHLELVNCKFGQF------PTLKLKSLKRLTFTSNKGGNAF--SEVDL 346

Query: 467 THMTLLALYDNALS--GVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRN 524
             +  L L  N LS  G   +       L  L LS N +     N   L  L  L    +
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406

Query: 525 HLTCNISES-FGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIG 583
           +L      S F     L ++D+SH +     +  +    +L    ++ N+   +  P+I 
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI- 465

Query: 584 DSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSS 643
                                   +L +L  L L + QL    P+   SL  L+ L+++S
Sbjct: 466 ----------------------FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503

Query: 644 NRLSNSIPRSLGNLVKLHYLNLSTNQF 670
           N+L +        L  L  + L TN +
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  171 bits (436), Expect = 2e-45
 Identities = 90/458 (19%), Positives = 164/458 (35%), Gaps = 38/458 (8%)

Query: 97  TLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSF-SGTIPPQIGNLS 155
           +L   +FS    L  L      +  +    IG++  LK L+++ N   S  +P    NL+
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 156 MLKFLYLSANQFSGRIPPQIGHLS----YIEALHLFKNQLSGPIPHEVGGLSSLNELALT 211
            L+ L LS+N+        +  L        +L L  N ++  I         L++L L 
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLR 208

Query: 212 SNFLKGSIPP-SLGNLTNLAILYL------HNNSLSGSIPSEIGNLKSLSSLALGNNKL- 263
           +NF   ++    +  L  L +  L      +  +L     S +  L +L+        L 
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268

Query: 264 --CGSIPLFLGNLTNLDTLYLRNNSFSSSIP-SEIGNLKSLSILELGENRLNGSIPLSL- 319
                I      LTN+ +  L + +       S     + L ++     +       SL 
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK 328

Query: 320 ---------------GNLTNLDTLYLYTNSLS--GSIPSEIGNLKSLSGLELADNELSSS 362
                           +L +L+ L L  N LS  G          SL  L+L+ N + + 
Sbjct: 329 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT- 387

Query: 363 IPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSENKLSGSIPHSLGNLTNL 421
           +      L  L       ++L       +  +L++L  LD+S      +       L++L
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 422 AILYLHSNTLLGSIPREI-GNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALS 480
            +L +  N+   +   +I   L++L  L L   +L      +  +L+ + +L +  N L 
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507

Query: 481 GVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIR 518
            V       L  L  + L  N    S P +  L+  + 
Sbjct: 508 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 545

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  151 bits (384), Expect = 1e-38
 Identities = 79/412 (19%), Positives = 135/412 (32%), Gaps = 39/412 (9%)

Query: 376 FYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSI 435
           +   + +    IP  +    S  NLDLS N L     +S  +   L +L L    +    
Sbjct: 12  YQCMELNFY-KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 436 PREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTM 495
                +L  L  L L  N + +    +   L+ +  L   +  L+ +    +G+L  L  
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 496 LTLSDNQLQ--GSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLS---HNNF 550
           L ++ N +Q         NLTNL  L L+ N +         +  ++  ++LS     N 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 551 YGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS-SQLHVIDL------SANHIIGKIP 603
              I     K   L    +  N    ++        + L V  L      +  ++     
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 604 SEIGKLSSLIKLILRRNQL---FGQLPSELGSLIQLEYLDLSSNRLSNSIPRS-LGNLVK 659
           S +  L +L     R   L      +      L  +    L S  +      S       
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQH 308

Query: 660 LHYLNLSTNQFIQEIPIKLEKLI----------------HLSELDLSHNFLGKE--IPSQ 701
           L  +N    QF       L++L                  L  LDLS N L  +      
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 702 ICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFS 753
                SL+ L+LS N +   +   F  +  L ++D  ++ L   +   + F 
Sbjct: 369 DFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQ-MSEFSVFL 418

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  102 bits (255), Expect = 1e-22
 Identities = 61/256 (23%), Positives = 97/256 (37%), Gaps = 15/256 (5%)

Query: 514 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN 573
            +   L L+ N L    S SF   P+L  +DLS           +    +L T  ++  N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT-GN 86

Query: 574 IIGSLPPEI-GDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQL-FGQLPSELG 631
            I SL        S L  +     ++       IG L +L +L +  N +   +LP    
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 632 SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHY----LNLSTNQFIQEIPIKLEKLIHLSEL 687
           +L  LE+LDLSSN++ +     L  L ++      L+LS N  +  I     K I L +L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKL 205

Query: 688 DLSHNFLGKEIPSQIC-NMRSLEMLNL------SHNNLSDFIPRCFEEMNGLLYIDISYN 740
            L +NF    +       +  LE+  L      +  NL  F     E +  L   +    
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 741 ELHGPIPNSTAFSDAL 756
            L   + +     + L
Sbjct: 266 YLDYYLDDIIDLFNCL 281

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 88.2 bits (219), Expect = 3e-18
 Identities = 36/161 (22%), Positives = 60/161 (37%), Gaps = 4/161 (2%)

Query: 590 VIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNS 649
                  +   KIP  +    S   L L  N L         S  +L+ LDLS   +   
Sbjct: 11  TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 650 IPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLE 709
              +  +L  L  L L+ N            L  L +L      L       I ++++L+
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 710 MLNLSHNNLSDF-IPRCFEEMNGLLYIDISYNELHGPIPNS 749
            LN++HN +  F +P  F  +  L ++D+S N++       
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 16/81 (19%), Positives = 34/81 (41%)

Query: 88  NLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTI 147
            +     +       F+   +L +LDL   Q+  + P    ++S L+ L+++SN      
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510

Query: 148 PPQIGNLSMLKFLYLSANQFS 168
                 L+ L+ ++L  N + 
Sbjct: 511 DGIFDRLTSLQKIWLHTNPWD 531

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  198 bits (506), Expect = 4e-57
 Identities = 57/343 (16%), Positives = 111/343 (32%), Gaps = 27/343 (7%)

Query: 127 IGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHL 186
             + S  + L    ++        +           +    + R      + +  +    
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETR 63

Query: 187 FKNQLSGPIPHEVGGLSSLN--ELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIP 244
               L       +   +      L L S  L    P     L++L  + +    L   +P
Sbjct: 64  TGRALKA-TADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELP 120

Query: 245 SEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSIL 304
             +     L +L L  N L  ++P  + +L  L  L +R     + +P  + +       
Sbjct: 121 DTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLAST------ 173

Query: 305 ELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIP 364
                            L NL +L L    +  S+P+ I NL++L  L++ ++ LS+ + 
Sbjct: 174 ---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LG 222

Query: 365 HYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAIL 424
             + +L  L    L   +   + P   G    L  L L +     ++P  +  LT L  L
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282

Query: 425 YLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLT 467
            L     L  +P  I  L +   + +  +  +    H      
Sbjct: 283 DLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  194 bits (496), Expect = 1e-55
 Identities = 58/338 (17%), Positives = 107/338 (31%), Gaps = 27/338 (7%)

Query: 175 IGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYL 234
             H S  E L+   +    P    +                         N  N  I   
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIETR 63

Query: 235 HNNSLSGSIPSEIGNLKS--LSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIP 292
              +L  +    + +       +L L +  L    P     L++L  + +        +P
Sbjct: 64  TGRALK-ATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLME-LP 120

Query: 293 SEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGL 352
             +     L  L L  N L  ++P S+ +L  L  L +        +P  + +       
Sbjct: 121 DTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST------ 173

Query: 353 ELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIP 412
                            L NL +  L    +  S+P+ I NL++L +L +  + LS ++ 
Sbjct: 174 ---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALG 222

Query: 413 HSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLL 472
            ++ +L  L  L L   T L + P   G    L  L L D     ++   +  LT +  L
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282

Query: 473 ALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNL 510
            L        +P  +  L    ++ +  +       + 
Sbjct: 283 DLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  181 bits (461), Expect = 5e-51
 Identities = 61/395 (15%), Positives = 115/395 (29%), Gaps = 74/395 (18%)

Query: 265 GSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTN 324
           GS      + +  + LY + ++        +   +     +               N  N
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNN 57

Query: 325 LDTLYLYTNSLSGSIPSEIGNLKS--LSGLELADNELSSSIPHYLGNLTNLAAFYLYKNS 382
                    +L  +    + +        LEL    L    P     L++L    +    
Sbjct: 58  PQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAG 115

Query: 383 LSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNL 442
           L   +P  +     L  L L+ N L  ++P S+ +L  L  L + +   L  +P  + + 
Sbjct: 116 LM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST 173

Query: 443 KSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQ 502
            +  E                  L ++  L L    +   +P  + NL  L  L + ++ 
Sbjct: 174 DASGEH---------------QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP 217

Query: 503 LQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCP 562
           L    P + +L  L  L                        DL                 
Sbjct: 218 LSALGPAIHHLPKLEEL------------------------DLRGCTA------------ 241

Query: 563 NLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQL 622
                       + + PP  G  + L  + L     +  +P +I +L+ L KL LR    
Sbjct: 242 ------------LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289

Query: 623 FGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNL 657
             +LPS +  L     + +  +  +          
Sbjct: 290 LSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  172 bits (437), Expect = 1e-47
 Identities = 57/323 (17%), Positives = 108/323 (33%), Gaps = 22/323 (6%)

Query: 409 GSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTH 468
           GS  H   + +    LY   +T L      +   +  +     D    +S      N  +
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNA---DRNRWHSAW-RQANSNN 57

Query: 469 MTLLALYDNALSGVIPEELGNL--VKLTMLTLSDNQLQGSIPN-LRNLTNLIRLRLNRNH 525
             +      AL     + L +        L L    L    P+    L++L  + ++   
Sbjct: 58  PQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115

Query: 526 LTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS 585
           L   + ++      L  + L+ N     + +       L    +     +  LP  +  +
Sbjct: 116 LM-ELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLAST 173

Query: 586 S---------QLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQL 636
                      L  + L    I   +P+ I  L +L  L +R + L   L   +  L +L
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL 231

Query: 637 EYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGK 696
           E LDL       + P   G    L  L L     +  +P+ + +L  L +LDL       
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 697 EIPSQICNMRSLEMLNLSHNNLS 719
            +PS I  + +  ++ +  +  +
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  154 bits (392), Expect = 9e-42
 Identities = 50/328 (15%), Positives = 103/328 (31%), Gaps = 20/328 (6%)

Query: 432 LGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLV 491
           +GS      +      L    +         L                         N  
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSN 56

Query: 492 KLTMLTLSDNQLQGSIPNLRNLT--NLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNN 549
              + T +   L+ +   L + T    + L L    L     +       L  + +    
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115

Query: 550 FYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGK- 608
              ++     +   L T  ++ N +  +LP  I   ++L  + + A   + ++P  +   
Sbjct: 116 L-MELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST 173

Query: 609 --------LSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKL 660
                   L +L  L L    +   LP+ + +L  L+ L + ++ LS ++  ++ +L KL
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL 231

Query: 661 HYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSD 720
             L+L     ++  P        L  L L        +P  I  +  LE L+L       
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 721 FIPRCFEEMNGLLYIDISYNELHGPIPN 748
            +P    ++     I +  +       +
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  142 bits (360), Expect = 2e-37
 Identities = 46/220 (20%), Positives = 89/220 (40%), Gaps = 13/220 (5%)

Query: 102 SFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLY 161
                 HL ++ +    +   +P  +   + L+ L L+ N     +P  I +L+ L+ L 
Sbjct: 99  QAFRLSHLQHMTIDAAGL-MELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156

Query: 162 LSANQFSGRIPPQIG---------HLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTS 212
           + A      +P  +           L  +++L L    +   +P  +  L +L  L + +
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRN 215

Query: 213 NFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLG 272
           + L  ++ P++ +L  L  L L   +   + P   G    L  L L +     ++PL + 
Sbjct: 216 SPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH 274

Query: 273 NLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLN 312
            LT L+ L LR     S +PS I  L +  I+ +  +   
Sbjct: 275 RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  197 bits (504), Expect = 1e-56
 Identities = 101/370 (27%), Positives = 163/370 (44%), Gaps = 26/370 (7%)

Query: 205 LNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLC 264
              LA     +    P    +L       L   S++  +      L+S++ L +   K+ 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV- 56

Query: 265 GSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTN 324
            SI   +  LTNL+ L L  N  +   P  + NL  L+ L +G N++  +   +L NLTN
Sbjct: 57  ASIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTN 111

Query: 325 LDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLS 384
           L  LYL  +++S   P  + NL  +  L L  N   S +   L N+T L    + ++ + 
Sbjct: 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK 168

Query: 385 GSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKS 444
              P  I NL  L +L L+ N++    P  L +LT+L     + N +    P  + N+  
Sbjct: 169 DVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTR 222

Query: 445 LFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ 504
           L  L++G+NK+++     L NL+ +T L +  N +S +    + +L KL ML +  NQ+ 
Sbjct: 223 LNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQIS 278

Query: 505 GSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNL 564
             I  L NL+ L  L LN N L     E  G    LT + LS N+              +
Sbjct: 279 -DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD--IRPLASLSKM 335

Query: 565 GTFDVSVNNI 574
            + D +   I
Sbjct: 336 DSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  195 bits (498), Expect = 9e-56
 Identities = 84/356 (23%), Positives = 154/356 (43%), Gaps = 25/356 (7%)

Query: 101 FSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFL 160
           F  +         LQ   +  ++      +  +  L ++           I  L+ L++L
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV--ASIQGIEYLTNLEYL 71

Query: 161 YLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIP 220
            L+ NQ +   P  + +L  +  L++  N+++      +  L++L EL L  + +    P
Sbjct: 72  NLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISP 127

Query: 221 PSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTL 280
             L NLT +  L L  N    S  S + N+  L+ L +  +K+    P  + NLT+L +L
Sbjct: 128 --LANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSL 182

Query: 281 YLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIP 340
            L  N      P  + +L SL       N++    P  + N+T L++L +  N ++   P
Sbjct: 183 SLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP 238

Query: 341 SEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNL 400
             + NL  L+ LE+  N++S    + + +LT L    +  N +S    S + NL  L++L
Sbjct: 239 --LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSL 292

Query: 401 DLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLS 456
            L+ N+L       +G LTNL  L+L  N +    P  + +L  +      +  + 
Sbjct: 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  192 bits (490), Expect = 1e-54
 Identities = 85/371 (22%), Positives = 153/371 (41%), Gaps = 26/371 (7%)

Query: 277 LDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLS 336
             TL       +   P    +L       L +  +   +      L ++  L +    ++
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVA 57

Query: 337 GSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKS 396
                 I  L +L  L L  N+++   P  L NL  L   Y+  N ++    S + NL +
Sbjct: 58  S--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTN 111

Query: 397 LSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLS 456
           L  L L+E+ +S   P  L NLT +  L L +N  L  +   + N+  L  L + ++K+ 
Sbjct: 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK 168

Query: 457 NSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNL 516
           +     + NLT +  L+L  N +  + P  L +L  L   T   NQ+   I  + N+T L
Sbjct: 169 DVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT-DITPVANMTRL 223

Query: 517 IRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIG 576
             L++  N +T           +LT++++  N       +       L   +V  N I  
Sbjct: 224 NSLKIGNNKIT--DLSPLANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQI-- 277

Query: 577 SLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQL 636
           S    + + SQL+ + L+ N +  +    IG L++L  L L +N +       L SL ++
Sbjct: 278 SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI--TDIRPLASLSKM 335

Query: 637 EYLDLSSNRLS 647
           +  D ++  + 
Sbjct: 336 DSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  184 bits (470), Expect = 6e-52
 Identities = 97/394 (24%), Positives = 172/394 (43%), Gaps = 50/394 (12%)

Query: 349 LSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLS 408
            + L      ++   P    +L       L K S++  +      L+S++ L ++  K++
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 409 GSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTH 468
            SI   +  LTNL  L L+ N +    P  + NL  L  L +G NK+++ IS +L NLT+
Sbjct: 58  -SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTN 111

Query: 469 MTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTC 528
           +  L L ++ +S + P  L NL K+  L L  N     +  L N+T L  L +  + +  
Sbjct: 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK- 168

Query: 529 NISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQL 588
                      L  + L++N                          I  + P +   + L
Sbjct: 169 -DVTPIANLTDLYSLSLNYNQ-------------------------IEDISP-LASLTSL 201

Query: 589 HVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSN 648
           H      N I    P  +  ++ L  L +  N++     S L +L QL +L++ +N++S+
Sbjct: 202 HYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISD 257

Query: 649 SIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSL 708
               ++ +L KL  LN+ +NQ I +I + L  L  L+ L L++N LG E    I  + +L
Sbjct: 258 --INAVKDLTKLKMLNVGSNQ-ISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313

Query: 709 EMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 742
             L LS N+++D  P     ++ +   D +   +
Sbjct: 314 TTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  168 bits (428), Expect = 3e-46
 Identities = 81/351 (23%), Positives = 153/351 (43%), Gaps = 24/351 (6%)

Query: 397 LSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLS 456
            + L      ++   P    +L       L   ++   +      L+S+ +L +   K++
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 457 NSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNL 516
            SI   +  LT++  L L  N ++ + P  L NLVKLT L +  N++   I  L+NLTNL
Sbjct: 58  -SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISALQNLTNL 112

Query: 517 IRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIG 576
             L LN ++++           K+  ++L  N+    +S        L    V+ + +  
Sbjct: 113 RELYLNEDNIS--DISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKV-- 167

Query: 577 SLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQL 636
                I + + L+ + L+ N I     S +  L+SL       NQ+     + + ++ +L
Sbjct: 168 KDVTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQI--TDITPVANMTRL 223

Query: 637 EYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGK 696
             L + +N++++  P  L NL +L +L + TNQ I +I   ++ L  L  L++  N +  
Sbjct: 224 NSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ-ISDIN-AVKDLTKLKMLNVGSNQISD 279

Query: 697 EIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIP 747
              S + N+  L  L L++N L +        +  L  + +S N +    P
Sbjct: 280 --ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 75.7 bits (187), Expect = 9e-15
 Identities = 32/145 (22%), Positives = 63/145 (43%), Gaps = 10/145 (6%)

Query: 604 SEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYL 663
                L+  I+ +L++  +          L  +  L ++  +++ SI   +  L  L YL
Sbjct: 16  FPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYL 71

Query: 664 NLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP 723
           NL+ NQ I +I   L  L+ L+ L +  N +     S + N+ +L  L L+ +N+SD  P
Sbjct: 72  NLNGNQ-ITDISP-LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP 127

Query: 724 RCFEEMNGLLYIDISYNELHGPIPN 748
                +  +  +++  N     +  
Sbjct: 128 --LANLTKMYSLNLGANHNLSDLSP 150

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  196 bits (500), Expect = 5e-55
 Identities = 124/525 (23%), Positives = 205/525 (39%), Gaps = 74/525 (14%)

Query: 219 IPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLD 278
           I P   + T L     H+++L+  +P E  N+KS +      ++   + P   G    + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 279 TLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGS 338
              LR+              +    LEL    L+ S+P    +L +L       NSL+  
Sbjct: 62  VSRLRDCL-----------DRQAHELELNNLGLS-SLPELPPHLESLV---ASCNSLT-E 105

Query: 339 IPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLS 398
           +P    +LKSL         LS   P     L  L    +  N L   +P E+ N   L 
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPP----LLEYL---GVSNNQLE-KLP-ELQNSSFLK 156

Query: 399 NLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNS 458
            +D+  N L   +P    +L  +A      N  L  +P E+ NL  L  +   +N L   
Sbjct: 157 IIDVDNNSLK-KLPDLPPSLEFIAA----GNNQLEELP-ELQNLPFLTAIYADNNSLK-K 209

Query: 459 ISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIR 518
           +     +L     +   +N L      EL NL  LT +   +N L+ ++P+L    +L  
Sbjct: 210 LPDLPLSLES---IVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDL--PPSLEA 261

Query: 519 LRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSL 578
           L +  N+LT ++ E       LTF+D+S N      S      PNL   + S +N I SL
Sbjct: 262 LNVRDNYLT-DLPELPQ---SLTFLDVSEN----IFSGLSELPPNLYYLNAS-SNEIRSL 312

Query: 579 PPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEY 638
                    L  +++S N +I ++P+   +L    +LI   N L  ++P    +L   + 
Sbjct: 313 CDLP---PSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHL-AEVPELPQNL---KQ 361

Query: 639 LDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEI 698
           L +  N L    P    ++  L   +        E+P   E   +L +L +  N L +E 
Sbjct: 362 LHVEYNPLR-EFPDIPESVEDLRMNSHLA-----EVP---ELPQNLKQLHVETNPL-REF 411

Query: 699 PSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 743
           P       S+E L ++   + D      E  + L      ++  H
Sbjct: 412 PDIP---ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  194 bits (495), Expect = 3e-54
 Identities = 111/519 (21%), Positives = 188/519 (36%), Gaps = 74/519 (14%)

Query: 201 GLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGN 260
             + L E    S+ L   +P    N+ +    Y   +    + P   G  + ++   L +
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 261 NKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLG 320
                              L L N    SS+P    +L+SL       N L   +P    
Sbjct: 68  CL-----------DRQAHELELNNLGL-SSLPELPPHLESLV---ASCNSLT-ELPELPQ 111

Query: 321 NLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYK 380
           +L +L        +LS   P        L  L +++N+L   +P  L N + L    +  
Sbjct: 112 SLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQL-EKLPE-LQNSSFLKIIDVDN 162

Query: 381 NSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIG 440
           NSL   +P    +L+    +    N+L   +P  L NL  L  +Y  +N  L  +P    
Sbjct: 163 NSLK-KLPDLPPSLEF---IAAGNNQLE-ELP-ELQNLPFLTAIYADNN-SLKKLPDLPL 215

Query: 441 NLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSD 500
           +L+    +  G+N L       L NL  +T +   +N L   +P+   +   L  L + D
Sbjct: 216 SLE---SIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPS---LEALNVRD 266

Query: 501 NQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGK 560
           N L       ++LT L       + L+          P L +++ S N    +I S    
Sbjct: 267 NYLTDLPELPQSLTFLDVSENIFSGLSELP-------PNLYYLNASSN----EIRSLCDL 315

Query: 561 CPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRN 620
            P+L   +VS N +I  LP       +L  +  S NH + ++P     L     L +  N
Sbjct: 316 PPSLEELNVSNNKLI-ELPALPP---RLERLIASFNH-LAEVPELPQNLKQ---LHVEYN 367

Query: 621 QLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEK 680
            L  + P    S+      DL  N     +P    N   L  L++ TN  ++E P   + 
Sbjct: 368 PL-REFPDIPESVE-----DLRMNSHLAEVPELPQN---LKQLHVETNP-LREFP---DI 414

Query: 681 LIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLS 719
              + +L ++   +             LE     H++  
Sbjct: 415 PESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  194 bits (494), Expect = 3e-54
 Identities = 99/522 (18%), Positives = 187/522 (35%), Gaps = 74/522 (14%)

Query: 171 IPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLA 230
           I P+    ++++      + L+  +P E   + S  E     +  + + PP  G    +A
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 231 ILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSS 290
           +  L +              +    L L N  L  S+P    +L +L       NS  + 
Sbjct: 62  VSRLRDCL-----------DRQAHELELNNLGLS-SLPELPPHLESLV---ASCNSL-TE 105

Query: 291 IPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLS 350
           +P    +LKSL +       L+   P        L+ L +  N L   +P E+ N   L 
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLP-ELQNSSFLK 156

Query: 351 GLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGS 410
            +++ +N L   +P    +L  +       N L   +P E+ NL  L+ +    N L   
Sbjct: 157 IIDVDNNSL-KKLPDLPPSLEFI---AAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-K 209

Query: 411 IPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMT 470
           +P    +L +   +   +N L      E+ NL  L  +   +N L  ++     +L  + 
Sbjct: 210 LPDLPLSLES---IVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALN 263

Query: 471 LLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNI 530
           +    DN L+  +PE   +L  L +     + L    PNL  L        + N +    
Sbjct: 264 VR---DNYLTD-LPELPQSLTFLDVSENIFSGLSELPPNLYYLN------ASSNEIR--- 310

Query: 531 SESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHV 590
                + P L  +++S+N    ++       P L     S  N +  +P        L  
Sbjct: 311 -SLCDLPPSLEELNVSNN----KLIELPALPPRLERLIAS-FNHLAEVPELPQ---NLKQ 361

Query: 591 IDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSI 650
           + +  N +  + P     +       LR N    ++P    +   L+ L + +N L    
Sbjct: 362 LHVEYNPLR-EFPDIPESVED-----LRMNSHLAEVPELPQN---LKQLHVETNPLR-EF 411

Query: 651 PRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHN 692
           P    +   +  L +++ + +       E    L +    H+
Sbjct: 412 PDIPES---VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  188 bits (480), Expect = 3e-52
 Identities = 107/523 (20%), Positives = 192/523 (36%), Gaps = 74/523 (14%)

Query: 147 IPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLN 206
           I P+  + + L+     ++  +  +P +  ++      +   ++     P   G    + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 207 ELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGS 266
              L     +               L L+N  LS S+P    +L+SL       N L   
Sbjct: 62  VSRLRDCLDR-----------QAHELELNNLGLS-SLPELPPHLESLV---ASCNSL-TE 105

Query: 267 IPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLD 326
           +P    +L +L        + S   P        L  L +  N+L   +P  L N + L 
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLE-KLP-ELQNSSFLK 156

Query: 327 TLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGS 386
            + +  NSL   +P    +L+ ++     +N+L   +P  L NL  L A Y   NSL   
Sbjct: 157 IIDVDNNSLK-KLPDLPPSLEFIA---AGNNQLEE-LPE-LQNLPFLTAIYADNNSLK-K 209

Query: 387 IPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLF 446
           +P    +L+   ++    N L       L NL  L  +Y  +N LL ++P    +L++L 
Sbjct: 210 LPDLPLSLE---SIVAGNNILE--ELPELQNLPFLTTIYADNN-LLKTLPDLPPSLEALN 263

Query: 447 ELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGS 506
              + DN L   +     +LT + +     + LS + P        L  L  S N+++ S
Sbjct: 264 ---VRDNYL-TDLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIR-S 311

Query: 507 IPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGT 566
           + +L    +L  L ++ N L   +        +L  +  S N     ++       NL  
Sbjct: 312 LCDL--PPSLEELNVSNNKLI-ELPALPP---RLERLIASFN----HLAEVPELPQNLKQ 361

Query: 567 FDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQL 626
             V   N +   P          V DL  N  + ++P       +L +L +  N L  + 
Sbjct: 362 LHVE-YNPLREFPDIPE-----SVEDLRMNSHLAEVPELPQ---NLKQLHVETNPL-REF 411

Query: 627 PSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQ 669
           P    S   +E L ++S R+ +    +     KL       + 
Sbjct: 412 PDIPES---VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  176 bits (448), Expect = 6e-48
 Identities = 101/500 (20%), Positives = 171/500 (34%), Gaps = 73/500 (14%)

Query: 123 IPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIE 182
           +P +  N+        + + +    PP  G    +    L                    
Sbjct: 26  MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQ-----------AH 74

Query: 183 ALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGS 242
            L L    LS  +P     L SL     + N L   +P    +L +L +   +  +LS  
Sbjct: 75  ELELNNLGLS-SLPELPPHLESLV---ASCNSLT-ELPELPQSLKSLLVDNNNLKALSDL 129

Query: 243 IPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLS 302
            P        L  L + NN+L   +P  L N + L  + + NNS    +P    +L+ ++
Sbjct: 130 PP-------LLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSL-KKLPDLPPSLEFIA 179

Query: 303 ILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSS 362
               G N+L   +P  L NL  L  +Y   NSL   +P    +L+S+      +N L   
Sbjct: 180 ---AGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPLSLESIV---AGNNILEE- 229

Query: 363 IPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLA 422
               L NL  L   Y   N L  ++P    +L++   L++ +N L+  +P    +LT L 
Sbjct: 230 -LPELQNLPFLTTIYADNNLLK-TLPDLPPSLEA---LNVRDNYLT-DLPELPQSLTFLD 283

Query: 423 ILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGV 482
           +     +     +     NL  L       N  SN I         +  L + +N L   
Sbjct: 284 VSENIFS----GLSELPPNLYYL-------NASSNEIRSLCDLPPSLEELNVSNNKLI-E 331

Query: 483 IPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTF 542
           +P        L  L  S N L   +P L    NL +L +  N L     +        + 
Sbjct: 332 LPALPPR---LERLIASFNHLA-EVPEL--PQNLKQLHVEYNPLRE-FPDIPE-----SV 379

Query: 543 IDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKI 602
            DL  N+   ++        NL    V  N +    P        +  + +++  ++   
Sbjct: 380 EDLRMNSHLAEVPE---LPQNLKQLHVETNPLR-EFPDIPE---SVEDLRMNSERVVDPY 432

Query: 603 PSEIGKLSSLIKLILRRNQL 622
                    L   +   +  
Sbjct: 433 EFAHETTDKLEDDVFEHHHH 452

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  195 bits (498), Expect = 8e-54
 Identities = 100/525 (19%), Positives = 191/525 (36%), Gaps = 29/525 (5%)

Query: 131 SKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQ 190
                 D  S SF+ +IP  +   + +K L LS N+ +      +   + ++ L L  ++
Sbjct: 5   DASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 191 LSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSG-SIPSEIGN 249
           ++         L SL  L L+ N L        G L++L  L L  N      + S   N
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 250 LKSLSSLALGNNKLCGSIP-LFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGE 308
           L +L +L +GN +    I  +    LT+L+ L ++  S  +     + +++ +  L L  
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 309 NRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLG 368
           +     + +    L+++  L L   +L+    S +   +  S ++      S        
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241

Query: 369 NLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHS 428
            L  L  + L  + +         +       D + ++              +  L++  
Sbjct: 242 ELLKLLRYILELSEVE------FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ 295

Query: 429 NTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEE-- 486
             L   +      L+ +  + + ++K+         +L  +  L L +N +     +   
Sbjct: 296 FYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355

Query: 487 -LGNLVKLTMLTLSDNQLQGSIPN----LRNLTNLIRLRLNRNHLTCNISESFGIHPKLT 541
             G    L  L LS N L+ S+      L  L NL  L ++RN     + +S     K+ 
Sbjct: 356 CKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMR 413

Query: 542 FIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGK 601
           F++LS                 L   DVS NN + S    +    +L  + +S N +  K
Sbjct: 414 FLNLSSTGIR---VVKTCIPQTLEVLDVS-NNNLDSFSLFL---PRLQELYISRNKL--K 464

Query: 602 IPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRL 646
              +      L+ + + RNQL          L  L+ + L +N  
Sbjct: 465 TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  195 bits (498), Expect = 8e-54
 Identities = 103/520 (19%), Positives = 197/520 (37%), Gaps = 25/520 (4%)

Query: 231 ILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSS 290
           +    + S + SIPS +    ++ SL L  NK+       L    NL  L L+++  ++ 
Sbjct: 9   VCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI 65

Query: 291 IPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSG-SIPSEIGNLKSL 349
                 +L SL  L+L +N L+       G L++L  L L  N      + S   NL +L
Sbjct: 66  EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125

Query: 350 SGLELADNELSSSIP-HYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLS 408
             L + + E  S I       LT+L    +   SL       + +++ + +L L  ++ +
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

Query: 409 GSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTH 468
             +      L+++  L L    L       +   +    ++    + S     S   L  
Sbjct: 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245

Query: 469 MTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTC 528
           +    L  + +      +   L  L     S++ +   +  +     + RL + + +L  
Sbjct: 246 LLRYILELSEVE----FDDCTLNGLGDFNPSESDVVSELGKV-ETVTIRRLHIPQFYLFY 300

Query: 529 NISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPE---IGDS 585
           ++S  + +  K+  I + ++  +    S      +L   D+S N ++          G  
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360

Query: 586 SQLHVIDLSANHI--IGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSS 643
             L  + LS NH+  + K    +  L +L  L + RN     +P       ++ +L+LSS
Sbjct: 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSS 419

Query: 644 NRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQIC 703
             +   +         L  L++S N  +    + L +L    EL +S N L K +P    
Sbjct: 420 TGIR-VVKT--CIPQTLEVLDVSNNN-LDSFSLFLPRL---QELYISRNKL-KTLPD-AS 470

Query: 704 NMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 743
               L ++ +S N L       F+ +  L  I +  N   
Sbjct: 471 LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  184 bits (470), Expect = 5e-50
 Identities = 79/462 (17%), Positives = 159/462 (34%), Gaps = 22/462 (4%)

Query: 97  TLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSG-TIPPQIGNLS 155
           T+   +F S   L +LDL  N +  +     G +S LKYL+L  N +    +     NL+
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123

Query: 156 MLKFLYLSANQFSGRIPPQ-IGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNF 214
            L+ L +   +    I       L+ +  L +    L       +  +  ++ L L  + 
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183

Query: 215 LKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNL 274
               +      L+++  L L + +L+    S +   +  S +     +           L
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243

Query: 275 TNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNS 334
             L    L  +           +     + +   +  +    L       +  L++    
Sbjct: 244 LKLLRYILELSEVE------FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297

Query: 335 LSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSI---PSEI 391
           L   + +    L+ +  + + ++++      +  +L +L    L +N +        +  
Sbjct: 298 LFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK 357

Query: 392 GNLKSLSNLDLSENKLS--GSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQ 449
           G   SL  L LS+N L         L  L NL  L +  N     +P      + +  L 
Sbjct: 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLN 416

Query: 450 LGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN 509
           L    +             + +L + +N L          L +L  L +S N+L+ ++P+
Sbjct: 417 LSSTGIRVV---KTCIPQTLEVLDVSNNNLDSFSL----FLPRLQELYISRNKLK-TLPD 468

Query: 510 LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFY 551
                 L+ ++++RN L       F     L  I L  N + 
Sbjct: 469 ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  146 bits (371), Expect = 3e-37
 Identities = 68/439 (15%), Positives = 141/439 (32%), Gaps = 22/439 (5%)

Query: 86  SINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQ-IGNISKLKYLDLSSNSFS 144
            +NL     +       F +  +L  L +   + F  I       ++ L  L++ + S  
Sbjct: 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161

Query: 145 GTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSS 204
                 + ++  +  L L  ++ +  +      LS +  L L    L+      +     
Sbjct: 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEV 221

Query: 205 LNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLC 264
            + +   +         S   L  L    L  + +         +           ++  
Sbjct: 222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE------FDDCTLNGLGDFNPSESD 275

Query: 265 GSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTN 324
               L       +  L++        + +    L+ +  + +  +++         +L +
Sbjct: 276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS 335

Query: 325 LDTLYLYTNSLSGSI---PSEIGNLKSLSGLELADNELSS--SIPHYLGNLTNLAAFYLY 379
           L+ L L  N +        +  G   SL  L L+ N L S       L  L NL +  + 
Sbjct: 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS 395

Query: 380 KNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI 439
           +N+    +P      + +  L+LS   +   +         L +L + +N  L S     
Sbjct: 396 RNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDVSNNN-LDSFSL-- 448

Query: 440 GNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLS 499
             L  L EL +  NKL  ++  +      + ++ +  N L  V       L  L  + L 
Sbjct: 449 -FLPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLH 505

Query: 500 DNQLQGSIPNLRNLTNLIR 518
            N    S P +  L+  + 
Sbjct: 506 TNPWDCSCPRIDYLSRWLN 524

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  131 bits (331), Expect = 4e-32
 Identities = 61/383 (15%), Positives = 128/383 (33%), Gaps = 38/383 (9%)

Query: 378 LYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPR 437
               S + SIPS +    ++ +LDLS NK++      L    NL +L L S+ +      
Sbjct: 12  GRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68

Query: 438 EIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGV-IPEELGNLVKLTML 496
              +L SL  L L DN LS+  S   G L+ +  L L  N    + +     NL  L  L
Sbjct: 69  AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128

Query: 497 TLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQI 554
            + + +    I       LT+L  L +    L    S+S      +  + L  +      
Sbjct: 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE----- 183

Query: 555 SSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS-SQLHVIDLSANHIIGKIPSEIGKLSSLI 613
                                  L     D  S +  ++L   ++     S +       
Sbjct: 184 --------------------SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSS 223

Query: 614 KLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQE 673
            +     +           L++L    L  + +         +       + + ++    
Sbjct: 224 PMKKLAFRGSVLTDESFNELLKLLRYILELSEVE------FDDCTLNGLGDFNPSESDVV 277

Query: 674 IPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLL 733
             +   + + +  L +   +L  ++ +    +  ++ + + ++ +        + +  L 
Sbjct: 278 SELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLE 337

Query: 734 YIDISYNELHGPIPNSTAFSDAL 756
           ++D+S N +      ++A   A 
Sbjct: 338 FLDLSENLMVEEYLKNSACKGAW 360

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 80.2 bits (198), Expect = 1e-15
 Identities = 35/160 (21%), Positives = 62/160 (38%), Gaps = 5/160 (3%)

Query: 586 SQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNR 645
               V D  +      IPS +   +++  L L  N++      +L +   L+ L L S+R
Sbjct: 5   DASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 646 LSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGK-EIPSQICN 704
           ++     +  +L  L +L+LS N            L  L  L+L  N      + S   N
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 705 MRSLEMLNLSHNNLSDFIPR-CFEEMNGLLYIDISYNELH 743
           + +L+ L + +      I R  F  +  L  ++I    L 
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  198 bits (504), Expect = 6e-53
 Identities = 123/543 (22%), Positives = 193/543 (35%), Gaps = 62/543 (11%)

Query: 218 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSI-PLFLGNLTN 276
            +P     L     L L  N +     S    L+ L  L LG+     +I      NL N
Sbjct: 18  QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPN 74

Query: 277 LDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSI--PLSLGNLTNLDTLYLYTNS 334
           L  L L ++      P     L  L  L L    L+ ++       NL  L  L L  N 
Sbjct: 75  LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134

Query: 335 LSG-SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLT--NLAAFYLYKNSLSGSIPSEI 391
           +    +    G L SL  ++ + N++     H L  L    L+ F L  NSL   +  + 
Sbjct: 135 IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW 194

Query: 392 GN-LKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQL 450
           G  +    N+ L    +SG       N   + I    SN +  S    +     +     
Sbjct: 195 GKCMNPFRNMVLEILDVSG-------NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247

Query: 451 GDNKLSNSISHSLGNLTHMTL--LALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP 508
           G + + +   ++   L   ++  L L    +  +       L  L +L L+ N++   I 
Sbjct: 248 GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIA 306

Query: 509 N--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGT 566
           +     L NL  L L+ N L    S +F   PK+ +IDL  N+        +     L T
Sbjct: 307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366

Query: 567 FDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQL 626
            D+  N +       I     +  I LS N           KL +L K+ L         
Sbjct: 367 LDLRDNALT-----TIHFIPSIPDIFLSGN-----------KLVTLPKINL--------- 401

Query: 627 PSELGSLIQLEYLDLSSNRLSN-SIPRSLGNLVKLHYLNLSTNQFIQ-EIPIKLEKLIHL 684
                       + LS NRL N  I   L  +  L  L L+ N+F          +   L
Sbjct: 402 --------TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL 453

Query: 685 SELDLSHNFLGKEIPSQIC-----NMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISY 739
            +L L  N L     +++C      +  L++L L+HN L+   P  F  +  L  + ++ 
Sbjct: 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513

Query: 740 NEL 742
           N L
Sbjct: 514 NRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  195 bits (498), Expect = 4e-52
 Identities = 131/669 (19%), Positives = 235/669 (35%), Gaps = 98/669 (14%)

Query: 103 FSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLY 161
                    L L  N I  +       + +L+ L+L S     TI  +   NL  L+ L 
Sbjct: 20  PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79

Query: 162 LSANQFSGRIPPQI-GHLSYIEALHLFKNQLSGPI--PHEVGGLSSLNELALTSNFLKG- 217
           L +++    + P     L ++  L L+   LS  +        L +L  L L+ N ++  
Sbjct: 80  LGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138

Query: 218 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNL--KSLSSLALGNNKLCGSIPLFLGNLT 275
            + PS G L +L  +   +N +      E+  L  K+LS  +L  N L   + +  G   
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198

Query: 276 N------LDTLYLRNNSFSSSIPSEIGN------------LKSLSILELGENRLNGSIPL 317
           N      L+ L +  N ++  I     N               +     G + +      
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258

Query: 318 SLGNL--TNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAA 375
           +   L  +++  L L    +          LK L  L LA N+++         L NL  
Sbjct: 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV 318

Query: 376 FYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSI 435
             L  N L     S    L  ++ +DL +N ++     +   L  L  L L  N L    
Sbjct: 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL---- 374

Query: 436 PREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTM 495
              I  + S+ ++ L  NKL      +L                               +
Sbjct: 375 -TTIHFIPSIPDIFLSGNKLVTLPKINL----------------------------TANL 405

Query: 496 LTLSDNQLQG--SIPNLRNLTNLIRLRLNRNHLT-CNISESFGIHPKLTFIDLSHNNFYG 552
           + LS+N+L+    +  L  + +L  L LN+N  + C+  ++   +P L  + L  N    
Sbjct: 406 IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM--- 462

Query: 553 QISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSL 612
            +   W        F+                 S L V+ L+ N++    P     L++L
Sbjct: 463 -LQLAWETELCWDVFE---------------GLSHLQVLYLNHNYLNSLPPGVFSHLTAL 506

Query: 613 IKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQ 672
             L L  N+L     ++L +   LE LD+S N+L    P    +   L  L+++ N+FI 
Sbjct: 507 RGLSLNSNRLTVLSHNDLPA--NLEILDISRNQLLAPNPDVFVS---LSVLDITHNKFIC 561

Query: 673 EIPIK-LEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNG 731
           E  +      ++ + + ++             ++  +   + S  +L        +E   
Sbjct: 562 ECELSTFINWLNHTNVTIAGPP---------ADIYCVYPDSFSGVSLFSLSTEGCDEEEV 612

Query: 732 LLYIDISYN 740
           L  +  S  
Sbjct: 613 LKSLKFSLF 621

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  167 bits (424), Expect = 7e-43
 Identities = 100/492 (20%), Positives = 174/492 (35%), Gaps = 58/492 (11%)

Query: 273 NLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSI-PLSLGNLTNLDTLYLY 331
            L   + L L  N   +   S    L+ L +LELG      +I   +  NL NL  L L 
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 332 TNSLSGSIPSEIGNLKSLSGLELADNELSSSI--PHYLGNLTNLAAFYLYKNSLSG-SIP 388
           ++ +    P     L  L  L L    LS ++    Y  NL  L    L KN +    + 
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 389 SEIGNLKSLSNLDLSENKLSGSIPHSLGNLT--NLAILYLHSNTLLGSIPREIGNLKSLF 446
              G L SL ++D S N++     H L  L    L+   L +N+L   +  + G   + F
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201

Query: 447 E-LQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ- 504
             + L    +S        N   + +   + NA+S      L     +       + ++ 
Sbjct: 202 RNMVLEILDVSG-------NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254

Query: 505 ---GSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKC 561
               +   L   +++  L L+   +    S  F     L  ++L++N             
Sbjct: 255 PDQNTFAGLAR-SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK------------ 301

Query: 562 PNLGTFDVSVNNIIGSLPPEI-GDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRN 620
                        I  +  E       L V++LS N +     S    L  +  + L++N
Sbjct: 302 -------------INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348

Query: 621 QLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEK 680
            +          L +L+ LDL  N L+     ++  +  +  + LS N+ +      L K
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVT-----LPK 398

Query: 681 L-IHLSELDLSHNFL-GKEIPSQICNMRSLEMLNLSHNNLSDFIPRC-FEEMNGLLYIDI 737
           + +  + + LS N L   +I   +  +  L++L L+ N  S         E   L  + +
Sbjct: 399 INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458

Query: 738 SYNELHGPIPNS 749
             N L       
Sbjct: 459 GENMLQLAWETE 470

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  161 bits (410), Expect = 4e-41
 Identities = 99/484 (20%), Positives = 172/484 (35%), Gaps = 52/484 (10%)

Query: 279 TLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGS 338
             + R  + +  +P     L +   L L  N +      S   L  L  L L +     +
Sbjct: 8   IAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 339 IPSEI-GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSI--PSEIGNLK 395
           I  E   NL +L  L+L  +++    P     L +L    LY   LS ++       NLK
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123

Query: 396 SLSNLDLSENKLSG-SIPHSLGNLTNLAILYLHSNTLLGSIPREIGNL--KSLFELQLGD 452
           +L+ LDLS+N++    +  S G L +L  +   SN +      E+  L  K+L    L  
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183

Query: 453 NKLSNSISHSLGN-LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGS-IPNL 510
           N L + +S   G  +     + L    +SG       N   + +     N +  S   +L
Sbjct: 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSG-------NGWTVDITGNFSNAISKSQAFSL 236

Query: 511 RNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVS 570
               +++      +++                 D   N F G   S      ++   D+S
Sbjct: 237 ILAHHIMGAGFGFHNIK----------------DPDQNTFAGLARS------SVRHLDLS 274

Query: 571 VNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSEL 630
              +             L V++L+ N I          L +L  L L  N L     S  
Sbjct: 275 HGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF 334

Query: 631 GSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLS 690
             L ++ Y+DL  N ++    ++   L KL  L+L  N         +  +  + ++ LS
Sbjct: 335 YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLS 389

Query: 691 HNFLGKEIPSQICNMRSLEMLNLSHNNLSDF-IPRCFEEMNGLLYIDISYNELHGPIPNS 749
            N L   +P       +  +++LS N L +  I      +  L  + ++ N         
Sbjct: 390 GNKL-VTLPKINL---TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS-CSGD 444

Query: 750 TAFS 753
              S
Sbjct: 445 QTPS 448

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 67.1 bits (164), Expect = 2e-11
 Identities = 22/123 (17%), Positives = 43/123 (34%), Gaps = 7/123 (5%)

Query: 634 IQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIK-LEKLIHLSELDLSHN 692
                       L+  +P+ L        L LS N  I+ +       L  L  L+L   
Sbjct: 4   FDGRIAFYRFCNLT-QVPQVLNTT---ERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQ 58

Query: 693 FLGKEIPSQIC-NMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTA 751
           +    I  +   N+ +L +L+L  + +    P  F+ +  L  + + +  L   +     
Sbjct: 59  YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY 118

Query: 752 FSD 754
           F +
Sbjct: 119 FRN 121

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  178 bits (454), Expect = 2e-47
 Identities = 89/450 (19%), Positives = 168/450 (37%), Gaps = 50/450 (11%)

Query: 226 LTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNN 285
               A+L +  + L+ ++P  +     +++L + +N L  S+P     L  L+   +  N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNL-TSLPALPPELRTLE---VSGN 91

Query: 286 SFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGN 345
              +S+P     L  LSI       L           + L  L+++ N L+ S+P     
Sbjct: 92  QL-TSLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLT-SLPVLPPG 142

Query: 346 LKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSEN 405
           L+ LS   ++DN+L +S+P     L  L   + Y N L+ S+P     L+    L +S+N
Sbjct: 143 LQELS---VSDNQL-ASLPALPSELCKL---WAYNNQLT-SLPMLPSGLQE---LSVSDN 191

Query: 406 KLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGN 465
           +L+ S+P     L  L          L S+P     LK   EL +  N+L+ S+      
Sbjct: 192 QLA-SLPTLPSELYKLWAYNNR----LTSLPALPSGLK---ELIVSGNRLT-SLPVLPSE 242

Query: 466 LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-NLRNLTNLIRLRLNRN 524
           L     L +  N L+  +P        L  L++  NQL   +P +L +L++   + L  N
Sbjct: 243 LKE---LMVSGNRLTS-LPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 294

Query: 525 HLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGD 584
            L+     +     ++T              +            ++  + +  +P   G+
Sbjct: 295 PLS---ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWL--VPAREGE 349

Query: 585 SSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSN 644
            +      +          S      S  +  ++      Q+ S L  L + E L  ++ 
Sbjct: 350 PAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSWLAQLAEDEALRANTF 409

Query: 645 RLSNSIPRSLGNLVKLHYLNLSTNQFIQEI 674
            ++     S  + V      +   Q +   
Sbjct: 410 AMATEATSSCEDRVTFFLHQMKNVQLVHNA 439

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  174 bits (442), Expect = 6e-46
 Identities = 80/371 (21%), Positives = 140/371 (37%), Gaps = 46/371 (12%)

Query: 131 SKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQ 190
           +    L++  +  + T+P  +     +  L +  N  +  +P     L     L +  NQ
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLPAH--ITTLVIPDNNLT-SLPALPPELRT---LEVSGNQ 92

Query: 191 LSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNL 250
           L+  +P    GL  L+  +         +P     L     L++  N L+ S+P     L
Sbjct: 93  LTS-LPVLPPGLLELSIFSNPLT----HLPALPSGLCK---LWIFGNQLT-SLPVLPPGL 143

Query: 251 KSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENR 310
           + LS   + +N+L  S+P     L     L+  NN   +S+P     L+ LS   + +N+
Sbjct: 144 QELS---VSDNQL-ASLPALPSELCK---LWAYNNQL-TSLPMLPSGLQELS---VSDNQ 192

Query: 311 LNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNL 370
           L  S+P     L  L       N L+ S+P+    LK L    ++ N L +S+P     L
Sbjct: 193 LA-SLPTLPSELYKLWAYN---NRLT-SLPALPSGLKELI---VSGNRL-TSLPVLPSEL 243

Query: 371 TNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNT 430
             L    +  N L+ S+P     L S   L +  N+L+  +P SL +L++   + L  N 
Sbjct: 244 KEL---MVSGNRLT-SLPMLPSGLLS---LSVYRNQLT-RLPESLIHLSSETTVNLEGN- 294

Query: 431 LLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNL 490
            L     +     +      G   +   ++ +        L     + L      E    
Sbjct: 295 PLSERTLQALREITSAPGYSG-PIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPA 353

Query: 491 VKLTMLTLSDN 501
            +  M    DN
Sbjct: 354 DRWHMFGQEDN 364

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  169 bits (429), Expect = 2e-44
 Identities = 84/380 (22%), Positives = 145/380 (38%), Gaps = 51/380 (13%)

Query: 108 HLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQF 167
             A L++  + +   +P  +     +  L +  N+ + ++P     L   + L +S NQ 
Sbjct: 41  GNAVLNVGESGL-TTLPDCLPA--HITTLVIPDNNLT-SLPALPPEL---RTLEVSGNQL 93

Query: 168 SGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLT 227
           +  +P     L  +         L           S L +L +  N L  S+P     L 
Sbjct: 94  T-SLPVLPPGLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQLT-SLPVLPPGLQ 144

Query: 228 NLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSF 287
            L    + +N L+ S+P+    L  L      NN+L  S+P+    L  L    + +N  
Sbjct: 145 EL---SVSDNQLA-SLPALPSELCKLW---AYNNQL-TSLPMLPSGLQELS---VSDNQL 193

Query: 288 SSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLK 347
           +S +P+    L  L       NRL  S+P     L     L +  N L+ S+P     LK
Sbjct: 194 AS-LPTLPSELYKLWAYN---NRLT-SLPALPSGLK---ELIVSGNRLT-SLPVLPSELK 244

Query: 348 SLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKL 407
            L    ++ N L+S +P     L +L    +Y+N L+  +P  + +L S + ++L  N L
Sbjct: 245 ELM---VSGNRLTS-LPMLPSGLLSL---SVYRNQLT-RLPESLIHLSSETTVNLEGNPL 296

Query: 408 SGSIPHSLGNLTNLAILY---LHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSIS---- 460
           S     +L  +T+        +  +    S PRE   L       L   +          
Sbjct: 297 SERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRW 356

Query: 461 HSLGNLTHMTLLALYDNALS 480
           H  G   +    +L+ + LS
Sbjct: 357 HMFGQEDNADAFSLFLDRLS 376

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  158 bits (400), Expect = 2e-40
 Identities = 84/419 (20%), Positives = 142/419 (33%), Gaps = 69/419 (16%)

Query: 299 KSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNE 358
           +  +  E    R      +          L +  + L+ ++P  +     ++ L + DN 
Sbjct: 16  RRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNN 72

Query: 359 LSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNL 418
           L +S+P     L  L    +  N L+ S+P     L  LS        L           
Sbjct: 73  L-TSLPALPPELRTL---EVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPAL-------P 120

Query: 419 TNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNA 478
           + L  L++  N  L S+P     L+   EL + DN+L+ S+      L     L  Y+N 
Sbjct: 121 SGLCKLWIFGN-QLTSLPVLPPGLQ---ELSVSDNQLA-SLPALPSELCK---LWAYNNQ 172

Query: 479 LSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHP 538
           L+  +P     L +   L++SDNQL  S+P L   + L +L    N LT  +        
Sbjct: 173 LT-SLPMLPSGLQE---LSVSDNQLA-SLPTL--PSELYKLWAYNNRLTS-LPALPS--- 221

Query: 539 KLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHI 598
            L  + +S N                          + SLP       +L  + +S N +
Sbjct: 222 GLKELIVSGNR-------------------------LTSLPVLPS---ELKELMVSGNRL 253

Query: 599 IGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLV 658
              +P        L+ L + RNQL  +LP  L  L     ++L  N LS    ++L  + 
Sbjct: 254 T-SLPMLPS---GLLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308

Query: 659 KLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNN 717
                +    +F         +      L  +   +      +        M     N 
Sbjct: 309 SAPGYSGPIIRF-DMAGASAPRETRALHLAAADWLVPARE-GEPAPADRWHMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  147 bits (373), Expect = 3e-37
 Identities = 76/335 (22%), Positives = 123/335 (36%), Gaps = 44/335 (13%)

Query: 104 SSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLS 163
           +  P L  L++  NQ+   +P     + +L             +P        L  L++ 
Sbjct: 78  ALPPELRTLEVSGNQL-TSLPVLPPGLLELSIFSNPLTH----LPALPSG---LCKLWIF 129

Query: 164 ANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSL 223
            NQ +  +P     L     L +  NQL+  +P     L  L      +N L  S+P   
Sbjct: 130 GNQLT-SLPVLPPGLQE---LSVSDNQLAS-LPALPSELCKLW---AYNNQLT-SLPMLP 180

Query: 224 GNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLR 283
             L     L + +N L+ S+P+    L  L +    NN+L  S+P     L     L + 
Sbjct: 181 SGLQE---LSVSDNQLA-SLPTLPSELYKLWAY---NNRLT-SLPALPSGLK---ELIVS 229

Query: 284 NNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI 343
            N   +S+P     LK L    +  NRL  S+P+    L +L    +Y N L+  +P  +
Sbjct: 230 GNRL-TSLPVLPSELKELM---VSGNRLT-SLPMLPSGLLSLS---VYRNQLT-RLPESL 280

Query: 344 GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFY---LYKNSLSGSIPSEIGNLKSLSNL 400
            +L S + + L  N LS      L  +T+   +    +  +    S P E   L   +  
Sbjct: 281 IHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAAD 340

Query: 401 DLSENKLSGSIP----HSLGNLTNLAILYLHSNTL 431
            L   +     P    H  G   N     L  + L
Sbjct: 341 WLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRL 375

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  141 bits (358), Expect = 2e-35
 Identities = 70/336 (20%), Positives = 128/336 (38%), Gaps = 67/336 (19%)

Query: 394 LKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDN 453
               + L++ E+ L+ ++P  L    ++  L +  N L  S+P     L++L   ++  N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALPPELRTL---EVSGN 91

Query: 454 KLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNL 513
           +L++                         +P     L++L++ +     L      L  L
Sbjct: 92  QLTS-------------------------LPVLPPGLLELSIFSNPLTHLPALPSGLCKL 126

Query: 514 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN 573
                  +  N LT ++         L  + +S N    Q++S       L       NN
Sbjct: 127 W------IFGNQLT-SLPVLPP---GLQELSVSDN----QLASLPALPSELCKLWAY-NN 171

Query: 574 IIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSL 633
            + SLP        L  + +S N +   +P+   +L    KL    N+L   LP+     
Sbjct: 172 QLTSLPMLPS---GLQELSVSDNQLA-SLPTLPSELY---KLWAYNNRL-TSLPALPSG- 222

Query: 634 IQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNF 693
             L+ L +S NRL+ S+P     L +   L +S N+ +  +P        L  L +  N 
Sbjct: 223 --LKELIVSGNRLT-SLPVLPSELKE---LMVSGNR-LTSLP---MLPSGLLSLSVYRNQ 272

Query: 694 LGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEM 729
           L   +P  + ++ S   +NL  N LS+   +   E+
Sbjct: 273 L-TRLPESLIHLSSETTVNLEGNPLSERTLQALREI 307

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 82.2 bits (203), Expect = 3e-16
 Identities = 44/235 (18%), Positives = 78/235 (33%), Gaps = 34/235 (14%)

Query: 104 SSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLS 163
                L  L +  NQ+   +P        L  L   +N  + ++P     L   K L +S
Sbjct: 178 MLPSGLQELSVSDNQL-ASLPTLPSE---LYKLWAYNNRLT-SLPALPSGL---KELIVS 229

Query: 164 ANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSL 223
            N+ +  +P     L   + L +  N+L+  +P    GL SL+   +  N L   +P SL
Sbjct: 230 GNRLT-SLPVLPSEL---KELMVSGNRLTS-LPMLPSGLLSLS---VYRNQLT-RLPESL 280

Query: 224 GNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLR 283
            +L++   + L  N LS      +  + S    +    +   +          L      
Sbjct: 281 IHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH----- 335

Query: 284 NNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGS 338
             +    +P+  G                       G   N D   L+ + LS +
Sbjct: 336 LAAADWLVPAREGEPAPADRWH------------MFGQEDNADAFSLFLDRLSET 378

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  172 bits (438), Expect = 2e-46
 Identities = 71/462 (15%), Positives = 146/462 (31%), Gaps = 25/462 (5%)

Query: 195 IPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLS 254
           I       +      +T + LK ++     +  N+  L L  N LS    +++     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 255 SLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGS 314
            L L +N L  ++   L +L+ L TL L NN        E+    S+  L    N ++  
Sbjct: 62  LLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR- 113

Query: 315 IPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSS-SIPHYLGNLTNL 373
             +S         +YL  N ++     + G    +  L+L  NE+ + +      +   L
Sbjct: 114 --VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 374 AAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLG 433
               L  N +   +  ++     L  LDLS NKL+  +     +   +  + L +N  L 
Sbjct: 172 EHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN-KLV 227

Query: 434 SIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKL 493
            I + +   ++L    L  N      +       +  +  +    +  +  +        
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 494 TMLTLSDNQLQG-SIPNLRNLTNLIRLRLNRNHLTCN----ISESFGIHPKLTFIDLSHN 548
           T+        +    P    L  L R          +    +        +   ID    
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKE 346

Query: 549 NFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIG--KIPSEI 606
            +   I     +     T +     +   +       ++L      A   I       E 
Sbjct: 347 QYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQ 406

Query: 607 GKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSN 648
             L  L  ++ R  +++  +  +      +   D+  ++ + 
Sbjct: 407 SPLQLLRAIVKRYEEMY--VEQQSVQNNAIRDWDMYQHKETQ 446

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  172 bits (437), Expect = 3e-46
 Identities = 61/433 (14%), Positives = 123/433 (28%), Gaps = 25/433 (5%)

Query: 103 FSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYL 162
             +        +  + +   +     +   +K LDLS N  S      +   + L+ L L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 163 SANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPS 222
           S+N         +  LS +  L L  N +      E+    S+  L   +N +   +  S
Sbjct: 66  SSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCS 117

Query: 223 LGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCG-SIPLFLGNLTNLDTLY 281
                    +YL NN ++     + G    +  L L  N++   +      +   L+ L 
Sbjct: 118 --RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 282 LRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPS 341
           L+ N     +  ++     L  L+L  N+L   +     +   +  + L  N L   I  
Sbjct: 176 LQYNFI-YDVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 342 EIGNLKSLSGLELADNELSS-SIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNL 400
            +   ++L   +L  N     ++  +      +    + K ++              +  
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ--TVAKQTVKKLTGQNEEECTVPTLG 289

Query: 401 DLSENKLSGSIPHSLGNLTNLAILYLHSNTL----LGSIPREIGNLKSLFELQLGDNKLS 456
                            L  L        +        +  E  N     E+     +  
Sbjct: 290 HYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR 349

Query: 457 NSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLT---LSDNQLQGSIPNLRNL 513
             I            L     AL   +        +L       +   +LQ +      L
Sbjct: 350 TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPL 409

Query: 514 TNLIRLRLNRNHL 526
             L  +      +
Sbjct: 410 QLLRAIVKRYEEM 422

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  170 bits (432), Expect = 1e-45
 Identities = 65/481 (13%), Positives = 141/481 (29%), Gaps = 35/481 (7%)

Query: 242 SIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSL 301
           +I     N        + ++ L  ++     +  N+  L L  N  S    +++     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 302 SILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSS 361
            +L L  N L  ++ L   +L+ L TL L  N +      E+    S+  L  A+N +S 
Sbjct: 61  ELLNLSSNVLYETLDL--ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR 113

Query: 362 SIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSG-SIPHSLGNLTN 420
                     N+   YL  N ++     + G    +  LDL  N++   +      +   
Sbjct: 114 VSCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 421 LAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALS 480
           L  L L  N  +  +  ++     L  L L  NKL+  +     +   +T ++L +N L 
Sbjct: 171 LEHLNLQYN-FIYDVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

Query: 481 GVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKL 540
            +I + L     L    L  N             N     + +  +     ++       
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 541 TFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIG 600
           T                               + + +L        +  ++    +    
Sbjct: 287 TLGHYGAYC--------------CEDLPAPFADRLIAL-----KRKEHALLSGQGSET-E 326

Query: 601 KIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKL 660
           ++  E    +   ++   + Q    +            L+     L   +        +L
Sbjct: 327 RLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAEL 386

Query: 661 HYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSD 720
                     I+      E+        +   +    +  Q     ++   ++  +  + 
Sbjct: 387 DGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQ 446

Query: 721 F 721
            
Sbjct: 447 L 447

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  168 bits (426), Expect = 7e-45
 Identities = 68/483 (14%), Positives = 151/483 (31%), Gaps = 45/483 (9%)

Query: 218 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNL 277
           +I     N     I  + ++SL  ++ S   +  ++  L L  N L       L   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 278 DTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSG 337
           + L L +N        ++ +L +L  L+L  N +       L    +++TL+   N++S 
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112

Query: 338 SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSG-SIPSEIGNLKS 396
            +       +    + LA+N+++       G  + +    L  N +   +      +  +
Sbjct: 113 RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 397 LSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLS 456
           L +L+L  N +   +   +     L  L L SN  L  +  E  +   +  + L +NKL 
Sbjct: 171 LEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLV 227

Query: 457 NSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNL 516
                                     I + L     L    L  N             N 
Sbjct: 228 L-------------------------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

Query: 517 IRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSV----N 572
               + +  +     ++       T             +    +   L   + ++     
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQG 322

Query: 573 NIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGS 632
           +    L  E  + ++   ID         I     +  + I L  ++  L  Q+ +   +
Sbjct: 323 SETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRA 382

Query: 633 LIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQE-IPIKLEKLIHLSELDLSH 691
             +L+     +      +  +      L  L     ++ +  +  +  +   + + D+  
Sbjct: 383 HAELDGTLQQAVGQ-IELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQ 441

Query: 692 NFL 694
           +  
Sbjct: 442 HKE 444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  162 bits (412), Expect = 6e-43
 Identities = 66/443 (14%), Positives = 126/443 (28%), Gaps = 46/443 (10%)

Query: 314 SIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNL 373
           +I     N        +  +SL  ++ S   +  ++  L+L+ N LS      L   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 374 AAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLG 433
               L  N L      ++ +L +L  LDL+ N +       L    ++  L+  +N  + 
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANN-NIS 112

Query: 434 SIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGV-IPEELGNLVK 492
            +       +    + L +NK++       G  + +  L L  N +  V   E   +   
Sbjct: 113 RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 493 LTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYG 552
           L  L L  N +   +        L  L L+ N L   +   F     +T+I L +N    
Sbjct: 171 LEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK--- 225

Query: 553 QISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSL 612
                                 +  +   +  S  L   DL  N              + 
Sbjct: 226 ----------------------LVLIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQ 262

Query: 613 IKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQF-- 670
               + +  +                    +    +        L+ L     +      
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQG 322

Query: 671 --IQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFE- 727
              + +  + E      E+D         I       ++   L      L + +      
Sbjct: 323 SETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRA 382

Query: 728 --EMNGLLYIDISYNELHGPIPN 748
             E++G L   +   EL      
Sbjct: 383 HAELDGTLQQAVGQIELQHATEE 405

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  155 bits (394), Expect = 1e-40
 Identities = 61/419 (14%), Positives = 132/419 (31%), Gaps = 47/419 (11%)

Query: 338 SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSL 397
           +I     N       ++ D+ L  ++     +  N+    L  N LS    +++     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 398 SNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSN 457
             L+LS N L  ++   L +L+ L  L L++N +     +E+    S+  L   +N +S 
Sbjct: 61  ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR 113

Query: 458 SISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTN 515
                     +   + L +N ++ +   + G   ++  L L  N++          +   
Sbjct: 114 VSCSRGQGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 516 LIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNII 575
           L  L L  N +  ++        KL  +DLS N                          +
Sbjct: 171 LEHLNLQYNFIY-DVKGQVVF-AKLKTLDLSSNK-------------------------L 203

Query: 576 GSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQL-FGQLPSELGSLI 634
             + PE   ++ +  I L  N ++  I   +    +L    LR N    G L        
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

Query: 635 QLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFL 694
           +++ +      +     ++          +              ++LI L   + +    
Sbjct: 263 RVQTVAK--QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSG 320

Query: 695 G----KEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS 749
                + +  +  N      ++         I +        + ++     L   + N 
Sbjct: 321 QGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNG 379

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  153 bits (387), Expect = 1e-39
 Identities = 66/439 (15%), Positives = 133/439 (30%), Gaps = 23/439 (5%)

Query: 97  TLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSM 156
            +     + F  L  L+L  N ++      + ++S L+ LDL++N        ++     
Sbjct: 48  QISAADLAPFTKLELLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQ-----ELLVGPS 100

Query: 157 LKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLK 216
           ++ L+ + N  S R+          + ++L  N+++     + G  S +  L L  N + 
Sbjct: 101 IETLHAANNNIS-RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

Query: 217 G-SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLT 275
             +      +   L  L L  N +   +  ++     L +L L +NKL   +     +  
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKL-AFMGPEFQSAA 214

Query: 276 NLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSL 335
            +  + LRNN     I   +   ++L   +L  N  +    L      N     +   ++
Sbjct: 215 GVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTV 272

Query: 336 SGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGS----IPSEI 391
                         +               +   L  L        S  GS    +  E 
Sbjct: 273 KKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECER 332

Query: 392 GNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIP---REIGNLKSLFEL 448
            N      +D  + +    I            L      L   +    R    L    + 
Sbjct: 333 ENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQ 392

Query: 449 QLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP 508
            +G  +L ++            ++  Y+         +   +    M    + QL     
Sbjct: 393 AVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENA 452

Query: 509 NLRNLTNLIRLRLNRNHLT 527
            L+ L     L L   + T
Sbjct: 453 RLKKLNGEADLALASANAT 471

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  161 bits (410), Expect = 2e-43
 Identities = 79/386 (20%), Positives = 147/386 (38%), Gaps = 26/386 (6%)

Query: 386 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKS 444
            I S +       ++ +               L N  I+   ++T+   +P  +  + + 
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-RKLPAALLDSFRQ 70

Query: 445 LFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ 504
           +  L L D ++    +++      +  L +  NA+  + P    N+  LT+L L  N L 
Sbjct: 71  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130

Query: 505 GSIPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISS-DWGKC 561
            S+P     N   L  L ++ N+L     ++F     L  + LS N    +++  D    
Sbjct: 131 -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN----RLTHVDLSLI 185

Query: 562 PNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQ 621
           P+L   +VS N +       +     +  +D S N I   +   +     L  L L+ N 
Sbjct: 186 PSLFHANVSYNLL-----STLAIPIAVEELDASHNSI-NVVRGPV--NVELTILKLQHNN 237

Query: 622 LFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKL 681
           L     + L +   L  +DLS N L   +      + +L  L +S N+ +  + +  + +
Sbjct: 238 L--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPI 294

Query: 682 IHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNE 741
             L  LDLSHN L   +         LE L L HN++   +       + L  + +S+N+
Sbjct: 295 PTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHND 350

Query: 742 LHGPIPNSTAFSDALMEALQGNEGLC 767
                     F +    A+   +  C
Sbjct: 351 WD-CNSLRALFRNVARPAVDDADQHC 375

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  152 bits (386), Expect = 3e-40
 Identities = 74/388 (19%), Positives = 136/388 (35%), Gaps = 25/388 (6%)

Query: 146 TIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSL 205
            I   +    +   +++           +   L+  + +    + +       +     +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 206 NELALTSNFLKGSIPP-SLGNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKL 263
             L L    ++  I   +      +  LY+  N++   +P  +  N+  L+ L L  N L
Sbjct: 72  ELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL 129

Query: 264 CGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIPLSLGNL 322
                    N   L TL + NN+    I  +      SL  L+L  NRL     + L  +
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLI 185

Query: 323 TNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNS 382
            +L    +  N L     S +    ++  L+ + N ++         LT L    L  N+
Sbjct: 186 PSLFHANVSYNLL-----STLAIPIAVEELDASHNSINVVRGPVNVELTIL---KLQHNN 237

Query: 383 LSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNL 442
           L+      + N   L  +DLS N+L   + H    +  L  LY+ +N  L ++      +
Sbjct: 238 LT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPI 294

Query: 443 KSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQ 502
            +L  L L  N L   +  +      +  L L  N++  +   +L     L  LTLS N 
Sbjct: 295 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHND 350

Query: 503 LQGSIPNLRNLTNLIRLRLNRNHLTCNI 530
                       N+ R  ++     C I
Sbjct: 351 WD-CNSLRALFRNVARPAVDDADQHCKI 377

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  150 bits (380), Expect = 2e-39
 Identities = 83/437 (18%), Positives = 147/437 (33%), Gaps = 70/437 (16%)

Query: 235 HNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSE 294
                   I S +        + +               L N   +  +N++      + 
Sbjct: 5   PRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL 64

Query: 295 IGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI-GNLKSLSGLE 353
           + + + + +L L + ++      +      +  LY+  N++   +P  +  N+  L+ L 
Sbjct: 65  LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLV 123

Query: 354 LADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSENKLSGSIP 412
           L  N+LS                         S+P  I  N   L+ L +S N L     
Sbjct: 124 LERNDLS-------------------------SLPRGIFHNTPKLTTLSMSNNNLERIED 158

Query: 413 HSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLL 472
            +    T+L  L L SN  L  +   +  + SLF   +  N LS     +L     +  L
Sbjct: 159 DTFQATTSLQNLQLSSN-RLTHVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEEL 210

Query: 473 ALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISE 532
               N+++ V        V+LT+L L  N L      L N   L+ + L+ N L   +  
Sbjct: 211 DASHNSINVV---RGPVNVELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYH 266

Query: 533 SFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVID 592
            F    +L  + +S+N                          + +L         L V+D
Sbjct: 267 PFVKMQRLERLYISNNR-------------------------LVALNLYGQPIPTLKVLD 301

Query: 593 LSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLS-NSIP 651
           LS NH +  +     +   L  L L  N +   L   L +   L+ L LS N    NS+ 
Sbjct: 302 LSHNH-LLHVERNQPQFDRLENLYLDHNSI-VTLK--LSTHHTLKNLTLSHNDWDCNSLR 357

Query: 652 RSLGNLVKLHYLNLSTN 668
               N+ +    +   +
Sbjct: 358 ALFRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  140 bits (356), Expect = 2e-36
 Identities = 70/336 (20%), Positives = 125/336 (37%), Gaps = 26/336 (7%)

Query: 97  TLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLS 155
            L      SF  +  L+L   QI  I          ++ L +  N+    +PP +  N+ 
Sbjct: 59  KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVP 117

Query: 156 MLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSN 213
           +L  L L  N  S  +P  I  +   +  L +  N L   I  +     +SL  L L+SN
Sbjct: 118 LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSN 175

Query: 214 FLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGN 273
            L   +      + +L    +  N L     S +    ++  L   +N +   +      
Sbjct: 176 RLT-HVDL--SLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVR--GPV 224

Query: 274 LTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTN 333
              L  L L++N+ +    + + N   L  ++L  N L   +      +  L+ LY+  N
Sbjct: 225 NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282

Query: 334 SLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGN 393
            L  ++      + +L  L+L+ N L   +         L   YL  NS+  ++   +  
Sbjct: 283 RLV-ALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIV-TLK--LST 337

Query: 394 LKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSN 429
             +L NL LS N    +   +L    N+A   +   
Sbjct: 338 HHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 11/96 (11%), Positives = 36/96 (37%)

Query: 648 NSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRS 707
             I  +L      + +++           +   L +   +   ++ + K   + + + R 
Sbjct: 11  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ 70

Query: 708 LEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 743
           +E+LNL+   + +     F   + +  + + +N + 
Sbjct: 71  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 106

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  155 bits (395), Expect = 4e-42
 Identities = 60/325 (18%), Positives = 113/325 (34%), Gaps = 18/325 (5%)

Query: 202 LSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNN 261
            +      +T + LK ++     +  N+  L L  N LS    +++     L  L L +N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 262 KLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGN 321
            L     L L +L+ L TL L NN        E+    S+  L    N ++    +S   
Sbjct: 69  VL--YETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR---VSCSR 118

Query: 322 LTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSS-SIPHYLGNLTNLAAFYLYK 380
                 +YL  N ++     + G    +  L+L  NE+ + +      +   L    L  
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 381 NSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIG 440
           N +   +  ++     L  LDLS NKL+  +     +   +  + L +N  L  I + + 
Sbjct: 179 NFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN-KLVLIEKALR 234

Query: 441 NLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSD 500
             ++L    L  N      +       +  +  +    +   +  +      +  L    
Sbjct: 235 FSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKK-LTGQNEEECTVPTLGHYG 292

Query: 501 NQLQGSIPNLRNLTNLIRLRLNRNH 525
                 +P       LI L  + +H
Sbjct: 293 AYCCEDLPAPF-ADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  151 bits (384), Expect = 1e-40
 Identities = 58/303 (19%), Positives = 102/303 (33%), Gaps = 17/303 (5%)

Query: 242 SIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSL 301
           +I     N        + ++ L  ++     +  N+  L L  N  S    +++     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 302 SILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSS 361
            +L L  N L     L L +L+ L TL L  N +      E+    S+  L  A+N +S 
Sbjct: 61  ELLNLSSNVL--YETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR 113

Query: 362 SIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSG-SIPHSLGNLTN 420
                     N+   YL  N ++     + G    +  LDL  N++   +      +   
Sbjct: 114 VSCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 421 LAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALS 480
           L  L L  N  +  +  ++     L  L L  NKL+  +     +   +T ++L +N L 
Sbjct: 171 LEHLNLQYN-FIYDVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

Query: 481 GVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISESFGIHP 538
            +I + L     L    L  N                +  +           +E     P
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 539 KLT 541
            L 
Sbjct: 287 TLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  150 bits (382), Expect = 2e-40
 Identities = 57/334 (17%), Positives = 118/334 (35%), Gaps = 20/334 (5%)

Query: 218 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNL 277
           +I     N     I  + ++SL  ++ S   +  ++  L L  N L       L   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 278 DTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSG 337
           + L L +N        ++ +L +L  L+L  N +       L    +++TL+   N++S 
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112

Query: 338 SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSG-SIPSEIGNLKS 396
            +       +    + LA+N+++       G  + +    L  N +   +      +  +
Sbjct: 113 RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 397 LSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLS 456
           L +L+L  N +   +   +     L  L L SN  L  +  E  +   +  + L +NKL 
Sbjct: 171 LEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLV 227

Query: 457 NSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNL 516
             I  +L    ++    L  N        +        + T++   ++           +
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 517 IRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNF 550
             L     +   ++   F        I L H++ 
Sbjct: 286 PTLGHYGAYCCEDLPAPFA----DRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  146 bits (371), Expect = 6e-39
 Identities = 56/335 (16%), Positives = 119/335 (35%), Gaps = 20/335 (5%)

Query: 386 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSL 445
           +I     N        ++++ L  ++     +  N+  L L  N L      ++     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 446 FELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQG 505
             L L  N L    +  L +L+ +  L L +N +      EL     +  L  ++N +  
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112

Query: 506 SIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYG-QISSDWGKCPNL 564
            +           + L  N +T       G   ++ ++DL  N       +        L
Sbjct: 113 RVS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 565 GTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFG 624
              ++  N I   +  ++   ++L  +DLS+N +   +  E    + +  + LR N+L  
Sbjct: 172 EHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL-V 227

Query: 625 QLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHL 684
            +   L     LE+ DL  N       R      K   +     Q ++++  + E+   +
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDF--FSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 685 SELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLS 719
             L     +  +++P+         ++ L H++  
Sbjct: 286 PTLGHYGAYCCEDLPAPFA----DRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  144 bits (366), Expect = 2e-38
 Identities = 53/327 (16%), Positives = 105/327 (32%), Gaps = 18/327 (5%)

Query: 103 FSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYL 162
             +        +  + +   +     +   +K LDLS N  S      +   + L+ L L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 163 SANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPS 222
           S+N         +  LS +  L L  N +      E+    S+  L   +N +   +  S
Sbjct: 66  SSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCS 117

Query: 223 LGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCG-SIPLFLGNLTNLDTLY 281
                    +YL NN ++     + G    +  L L  N++   +      +   L+ L 
Sbjct: 118 --RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 282 LRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPS 341
           L+ N     +  ++     L  L+L  N+L   +     +   +  + L  N L   I  
Sbjct: 176 LQYNFI-YDVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 342 EIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLD 401
            +   ++L   +L  N              N     + K ++   +  +     ++  L 
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLG 289

Query: 402 LSENKLSGSIPHSLG-NLTNLAILYLH 427
                    +P      L  L   + H
Sbjct: 290 HYGAYCCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  143 bits (362), Expect = 7e-38
 Identities = 60/359 (16%), Positives = 122/359 (33%), Gaps = 47/359 (13%)

Query: 338 SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSL 397
           +I     N       ++ D+ L  ++     +  N+    L  N LS    +++     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 398 SNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSN 457
             L+LS N L       L +L+ L  L L++N +     +E+    S+  L   +N +S 
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR 113

Query: 458 SISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN---LRNLT 514
                     +   + L +N ++ +   + G   ++  L L  N++  ++       +  
Sbjct: 114 VSCSRGQGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSD 169

Query: 515 NLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNI 574
            L  L L  N +  ++        KL  +DLS N                          
Sbjct: 170 TLEHLNLQYNFIY-DVKGQVVF-AKLKTLDLSSNK------------------------- 202

Query: 575 IGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQL-FGQLPSELGSL 633
           +  + PE   ++ +  I L  N ++  I   +    +L    LR N    G L       
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261

Query: 634 IQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPI-KLEKLIHLSELDLSH 691
            +++ +   + +           +  L +         +++P    ++LI L      H
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYG---AYCCEDLPAPFADRLIALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  139 bits (352), Expect = 2e-36
 Identities = 57/311 (18%), Positives = 104/311 (33%), Gaps = 62/311 (19%)

Query: 434 SIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKL 493
           +I     N       ++ D+ L  +++    +  ++  L L  N LS +   +L    KL
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 494 TMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQ 553
            +L LS N L     +L +L+ L  L LN N++         + P +  +  ++NN    
Sbjct: 61  ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNN---- 110

Query: 554 ISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLI 613
                                I  +                                   
Sbjct: 111 ---------------------ISRVSCSR--------------------------GQGKK 123

Query: 614 KLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSN-SIPRSLGNLVKLHYLNLSTNQFIQ 672
            + L  N++      + G   +++YLDL  N +   +      +   L +LNL  N  I 
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IY 182

Query: 673 EIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGL 732
           ++         L  LDLS N L   +  +  +   +  ++L +N L   I +       L
Sbjct: 183 DVK-GQVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNL 239

Query: 733 LYIDISYNELH 743
            + D+  N  H
Sbjct: 240 EHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  121 bits (306), Expect = 2e-30
 Identities = 45/255 (17%), Positives = 95/255 (37%), Gaps = 16/255 (6%)

Query: 97  TLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSM 156
            +     + F  L  L+L  N ++      + ++S L+ LDL++N        ++     
Sbjct: 48  QISAADLAPFTKLELLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQ-----ELLVGPS 100

Query: 157 LKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLK 216
           ++ L+ + N  S R+          + ++L  N+++     + G  S +  L L  N + 
Sbjct: 101 IETLHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

Query: 217 G-SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLT 275
             +      +   L  L L  N +   +  ++     L +L L +NKL   +     +  
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKL-AFMGPEFQSAA 214

Query: 276 NLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLN-GSIPLSLGNLTNLDTLYLYTNS 334
            +  + LRNN     I   +   ++L   +L  N  + G++         + T+   T  
Sbjct: 215 GVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

Query: 335 LSGSIPSEIGNLKSL 349
                  E   + +L
Sbjct: 274 KLTGQNEEECTVPTL 288

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 80.0 bits (198), Expect = 3e-16
 Identities = 32/193 (16%), Positives = 69/193 (35%), Gaps = 11/193 (5%)

Query: 97  TLHDFSFSSFPHLAYLDLQVNQIFGIIPPQ-IGNISKLKYLDLSSNSFSGTIPPQIGNLS 155
            L D        + YLDL++N+I  +   +   +   L++L+L  N     +  Q+   +
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFA 191

Query: 156 MLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFL 215
            LK L LS+N+ +  + P+    + +  + L  N+L   I   +    +L    L  N  
Sbjct: 192 KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGF 249

Query: 216 KGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLT 275
                       N  +  +   ++   +  +     ++ +L       C  +P       
Sbjct: 250 H-CGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLP----APF 303

Query: 276 NLDTLYLRNNSFS 288
               + L ++   
Sbjct: 304 ADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 3/77 (3%)

Query: 671 IQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMN 730
           I EI     +        ++ + L + + S   +  +++ L+LS N LS           
Sbjct: 2   IHEIKQNGNRY---KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT 58

Query: 731 GLLYIDISYNELHGPIP 747
            L  +++S N L+  + 
Sbjct: 59  KLELLNLSSNVLYETLD 75

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  157 bits (400), Expect = 2e-41
 Identities = 76/324 (23%), Positives = 124/324 (38%), Gaps = 10/324 (3%)

Query: 231 ILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSS 290
            +  H      ++P  I        L LG N++         +  +L+ L L  N  S+ 
Sbjct: 15  AVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV 71

Query: 291 IPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI-GNLKSL 349
            P    NL +L  L L  NRL          L+NL  L +  N +   +   +  +L +L
Sbjct: 72  EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNL 130

Query: 350 SGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSENKLS 408
             LE+ DN+L          L +L    L K +L+ SIP+E   +L  L  L L    ++
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN 189

Query: 409 GSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTH 468
               +S   L  L +L +     L ++        +L  L +    L+     ++ +L +
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249

Query: 469 MTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHL 526
           +  L L  N +S +    L  L++L  + L   QL   +     R L  L  L ++ N L
Sbjct: 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQL 308

Query: 527 TCNISESFGIHPKLTFIDLSHNNF 550
           T      F     L  + L  N  
Sbjct: 309 TTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  154 bits (390), Expect = 4e-40
 Identities = 76/374 (20%), Positives = 143/374 (38%), Gaps = 20/374 (5%)

Query: 377 YLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIP 436
             ++     ++P  I        LDL +N++         +  +L  L L+ N +  ++ 
Sbjct: 17  LCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVE 72

Query: 437 REI-GNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTM 495
                NL +L  L L  N+L          L+++T L + +N +  ++     +L  L  
Sbjct: 73  PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132

Query: 496 LTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQ 553
           L + DN L   I +     L +L +L L + +LT   +E+      L  + L H N    
Sbjct: 133 LEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191

Query: 554 ISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSE-IGKLSSL 612
               + +   L   ++S    + ++ P       L  + ++  + +  +P   +  L  L
Sbjct: 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYL 250

Query: 613 IKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQ 672
             L L  N +     S L  L++L+ + L   +L+   P +   L  L  LN+S NQ + 
Sbjct: 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LT 309

Query: 673 EIPIKL-EKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCF--EEM 729
            +   +   + +L  L L  N L     +  C +  +        N +   P C   E +
Sbjct: 310 TLEESVFHSVGNLETLILDSNPL-----ACDCRLLWV-FRRRWRLNFNRQQPTCATPEFV 363

Query: 730 NGLLYIDISYNELH 743
            G  + D     L 
Sbjct: 364 QGKEFKDFPDVLLP 377

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  149 bits (377), Expect = 2e-38
 Identities = 70/309 (22%), Positives = 127/309 (41%), Gaps = 12/309 (3%)

Query: 106 FPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSA 164
                 LDL  N+I  +   +  +   L+ L+L+ N  S  + P    NL  L+ L L +
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS 89

Query: 165 NQFSGRIPPQI-GHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPP-S 222
           N+    IP  +   LS +  L + +N++   + +    L +L  L +  N L   I   +
Sbjct: 90  NRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRA 147

Query: 223 LGNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLY 281
              L +L  L L   +L+ SIP+E   +L  L  L L +  +          L  L  L 
Sbjct: 148 FSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206

Query: 282 LRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPS 341
           + +  +  ++        +L+ L +    L     L++ +L  L  L L  N +S +I  
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEG 265

Query: 342 EI-GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKSLSN 399
            +   L  L  ++L   +L+   P+    L  L    +  N L+ ++   +  ++ +L  
Sbjct: 266 SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLET 324

Query: 400 LDLSENKLS 408
           L L  N L+
Sbjct: 325 LILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  143 bits (363), Expect = 1e-36
 Identities = 74/294 (25%), Positives = 125/294 (42%), Gaps = 12/294 (4%)

Query: 97  TLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLS 155
           TL+   F+SFPHL  L+L  N +  + P    N+  L+ L L SN     IP  +   LS
Sbjct: 46  TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLS 104

Query: 156 MLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSN 213
            L  L +S N+    +   +   L  +++L +  N L   I H    GL+SL +L L   
Sbjct: 105 NLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVY-ISHRAFSGLNSLEQLTLEKC 162

Query: 214 FLKGSIPP-SLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLG 272
            L  SIP  +L +L  L +L L + +++         L  L  L + +     ++     
Sbjct: 163 NLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221

Query: 273 NLTNLDTLYLRNNSFSSSIPSE-IGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLY 331
              NL +L + + +  +++P   + +L  L  L L  N ++      L  L  L  + L 
Sbjct: 222 YGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV 280

Query: 332 TNSLSGSIPSEI-GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLS 384
              L+  +       L  L  L ++ N+L++       ++ NL    L  N L+
Sbjct: 281 GGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  154 bits (390), Expect = 8e-40
 Identities = 90/507 (17%), Positives = 176/507 (34%), Gaps = 46/507 (9%)

Query: 218 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNL 277
            +P  L       IL +  N +S    S+I +L  L  L + +N++             L
Sbjct: 14  HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL 71

Query: 278 DTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLS--LGNLTNLDTLYLYTNSL 335
           + L L +N     I        +L  L+L  N  + ++P+    GN++ L  L L T  L
Sbjct: 72  EYLDLSHNKLVK-ISC--HPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHL 127

Query: 336 SGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLK 395
             S    I +L     L +               L +     L+    +      I ++ 
Sbjct: 128 EKSSVLPIAHLNISKVLLVLGETYGEKED--PEGLQDFNTESLHIVFPTNKEFHFILDVS 185

Query: 396 SLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKL 455
             +  +L  + +   +  +  +     +  L +N  L ++            +++     
Sbjct: 186 VKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW 245

Query: 456 SNSISH-SLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNL-RNL 513
             ++ + S+ N+     L   D   SG       +L  L++  +  +        +    
Sbjct: 246 HTTVWYFSISNVKLQGQLDFRDFDYSGT------SLKALSIHQVVSDVFGFPQSYIYEIF 299

Query: 514 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN 573
           +N+       +                  +D S+N     +  + G    L T  +   N
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ-MN 358

Query: 574 IIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSEL-GS 632
            +  L                             ++ SL +L + +N +           
Sbjct: 359 QLKELSKIAEM---------------------TTQMKSLQQLDISQNSVSYDEKKGDCSW 397

Query: 633 LIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHN 692
              L  L++SSN L+++I R L    ++  L+L +N+ I+ IP ++ KL  L EL+++ N
Sbjct: 398 TKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASN 454

Query: 693 FLGKEIPSQIC-NMRSLEMLNLSHNNL 718
            L K +P  I   + SL+ + L  N  
Sbjct: 455 QL-KSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  150 bits (381), Expect = 1e-38
 Identities = 94/475 (19%), Positives = 154/475 (32%), Gaps = 26/475 (5%)

Query: 275 TNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNS 334
                L +  N  S    S+I +L  L IL +  NR+             L+ L L  N 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 335 LSGSIPSEIGNLKSLSGLELADNELSS-SIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGN 393
           L   I        +L  L+L+ N   +  I    GN++ L    L    L  S    I +
Sbjct: 81  LV-KISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 394 LKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDN 453
           L     L +               L +     LH           I +            
Sbjct: 138 LNISKVLLVLGETYGEKE--DPEGLQDFNTESLHIVFPTNKEFHFILD-------VSVKT 188

Query: 454 KLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNL 513
             +  +S+    L                   +L NL  L  +  + N     I  L   
Sbjct: 189 VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLT-LNNIETTWNSFI-RILQLVWH 246

Query: 514 TNLIRLRLNRNHLTCNISESFGIH-----PKLTFIDLSHNNFYGQISSDWGKCPNLGTFD 568
           T +    ++   L   +      +       L+   +  + F    S  +    N+   +
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306

Query: 569 VSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQL--FGQL 626
            +V+             S    +D S N +   +    G L+ L  LIL+ NQL    ++
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366

Query: 627 PSELGSLIQLEYLDLSSNRLSNSIPRSL-GNLVKLHYLNLSTNQFIQEIPIKLEKLIHLS 685
                 +  L+ LD+S N +S    +        L  LN+S+N     I   L     + 
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIK 424

Query: 686 ELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYN 740
            LDL  N + K IP Q+  + +L+ LN++ N L       F+ +  L  I +  N
Sbjct: 425 VLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  150 bits (379), Expect = 2e-38
 Identities = 91/467 (19%), Positives = 169/467 (36%), Gaps = 30/467 (6%)

Query: 107 PHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSAN 165
                L++  N I  +    I ++SKL+ L +S N     +   +      L++L LS N
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHN 79

Query: 166 QFSGRIPPQIGHLSYIEALHLFKNQL-SGPIPHEVGGLSSLNELALTSNFLKGSIPPSLG 224
           +    I         ++ L L  N   + PI  E G +S L  L L++  L+ S    + 
Sbjct: 80  KLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 225 NLTNLAILYLHNNSLSGSIPSE---IGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLY 281
           +L    +L +   +       E     N +SL  +   N +    + + +  + NL+   
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 282 LRNN------SFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNL---TNLDTLYLYT 332
           ++        S+  SI +++     LS L L       +  + +  L   T +    +  
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256

Query: 333 NSLSGSIPSEIG-----NLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSI 387
             L G +          +LK+LS  ++  +       +     +N+       +      
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH 316

Query: 388 PSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIG---NLKS 444
                 +    +LD S N L+ ++  + G+LT L  L L  N  L  + +       +KS
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKS 375

Query: 445 LFELQLGDNKLSNSISHSL-GNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQL 503
           L +L +  N +S             +  L +  N L+  I   L    ++ +L L  N++
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKI 433

Query: 504 QGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNF 550
           +     +  L  L  L +  N L       F     L  I L  N +
Sbjct: 434 KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  148 bits (375), Expect = 6e-38
 Identities = 86/500 (17%), Positives = 174/500 (34%), Gaps = 52/500 (10%)

Query: 181 IEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLS 240
              L++ +N +S     ++  LS L  L ++ N ++            L  L L +N L 
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

Query: 241 GSIPSEIGNLKSLSSLALGNNKLCGSIPL--FLGNLTNLDTLYLRNNSFSSSIPSEIGNL 298
             I        +L  L L  N    ++P+    GN++ L  L L       S    I +L
Sbjct: 83  -KISC--HPTVNLKHLDLSFNAF-DALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138

Query: 299 KSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNE 358
               +L +               L + +T  L+    +      I ++   +   L  + 
Sbjct: 139 NISKVLLVLGE--TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 359 LSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNL 418
           +          +        + + L+    +   +  +L+N++ + N     +   L   
Sbjct: 197 IK--------CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRIL--QLVWH 246

Query: 419 TNLAILYLHSNTLLGSIPREIG-----NLKSLFELQLGDNKLSNSISHSLGNLTHMTLLA 473
           T +    + +  L G +          +LK+L   Q+  +      S+     ++M +  
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306

Query: 474 LYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTCNISE 532
              +    V       +     L  S+N L  ++  N  +LT L  L L  N L   +S+
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSK 365

Query: 533 SFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS-SQLHVI 591
              +  ++                      +L   D+S N++              L  +
Sbjct: 366 IAEMTTQMK---------------------SLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404

Query: 592 DLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIP 651
           ++S+N +   I   +     +  L L  N++   +P ++  L  L+ L+++SN+L  S+P
Sbjct: 405 NMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVP 460

Query: 652 R-SLGNLVKLHYLNLSTNQF 670
                 L  L  + L TN +
Sbjct: 461 DGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  147 bits (373), Expect = 1e-37
 Identities = 91/482 (18%), Positives = 168/482 (34%), Gaps = 26/482 (5%)

Query: 123 IPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIE 182
           +P  +    K   L++S N  S      I +LS L+ L +S N+              +E
Sbjct: 15  VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72

Query: 183 ALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPS--LGNLTNLAILYLHNNSLS 240
            L L  N+L     H      +L  L L+ N    ++P     GN++ L  L L    L 
Sbjct: 73  YLDLSHNKLVKISCH---PTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLE 128

Query: 241 GSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKS 300
            S    I +L     L +               L + +T  L     ++     I ++  
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKED--PEGLQDFNTESLHIVFPTNKEFHFILDVSV 186

Query: 301 LSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELS 360
            ++  L  + +   +  +  +        L TN    ++          S + +      
Sbjct: 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWH 246

Query: 361 SSIPH-YLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLT 419
           +++ +  + N+             SG+      +LK+LS   +  +       +     +
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGT------SLKALSIHQVVSDVFGFPQSYIYEIFS 300

Query: 420 NLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNAL 479
           N+ I     +            +     L   +N L++++  + G+LT +  L L  N L
Sbjct: 301 NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360

Query: 480 SGV--IPEELGNLVKLTMLTLSDNQLQGSIP--NLRNLTNLIRLRLNRNHLTCNISESFG 535
             +  I E    +  L  L +S N +       +     +L+ L ++ N LT  I     
Sbjct: 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL- 419

Query: 536 IHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS-SQLHVIDLS 594
             P++  +DL  N     I     K   L   +V+ +N + S+P  I D  + L  I L 
Sbjct: 420 -PPRIKVLDLHSNKI-KSIPKQVVKLEALQELNVA-SNQLKSVPDGIFDRLTSLQKIWLH 476

Query: 595 AN 596
            N
Sbjct: 477 TN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  146 bits (369), Expect = 4e-37
 Identities = 96/446 (21%), Positives = 162/446 (36%), Gaps = 33/446 (7%)

Query: 97  TLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSF-SGTIPPQIGNLS 155
            L    F     L YLDL  N++  I          LK+LDLS N+F +  I  + GN+S
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLVKI---SCHPTVNLKHLDLSFNAFDALPICKEFGNMS 115

Query: 156 MLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFL 215
            LKFL LS           I HL+  + L +           +  GL   N  +L   F 
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKE--DPEGLQDFNTESLHIVFP 173

Query: 216 KGSIPPSLGNLTNLAILYLHNNSLSG-----------SIPSEIGNLKSLSSLALGNNKLC 264
                  + +++   +  L  +++             SI +++     LS+L L N +  
Sbjct: 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233

Query: 265 GSIPLFLGNL---TNLDTLYLRNNSFSSSIPSEIG-----NLKSLSILELGENRLNGSIP 316
            +  + +  L   T +    + N      +          +LK+LSI ++  +       
Sbjct: 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQS 293

Query: 317 LSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAF 376
                 +N++      +            +     L+ ++N L+ ++    G+LT L   
Sbjct: 294 YIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL 353

Query: 377 YLYKNSLSGSIPSEIG---NLKSLSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLL 432
            L  N L   +         +KSL  LD+S+N +S            +L  L + SN L 
Sbjct: 354 ILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412

Query: 433 GSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVK 492
            +I R +     +  L L  NK+  SI   +  L  +  L +  N L  V       L  
Sbjct: 413 DTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS 469

Query: 493 LTMLTLSDNQLQGSIPNLRNLTNLIR 518
           L  + L  N    S P +  L+  + 
Sbjct: 470 LQKIWLHTNPWDCSCPRIDYLSRWLN 495

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  114 bits (288), Expect = 7e-27
 Identities = 76/395 (19%), Positives = 132/395 (33%), Gaps = 29/395 (7%)

Query: 378 LYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPR 437
             KN L   +P ++   +  + L++S+N +S      + +L+ L IL +  N +      
Sbjct: 7   RSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS 63

Query: 438 EIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGV-IPEELGNLVKLTML 496
                + L  L L  NKL     H   NL H   L L  NA   + I +E GN+ +L  L
Sbjct: 64  VFKFNQELEYLDLSHNKLVKISCHPTVNLKH---LDLSFNAFDALPICKEFGNMSQLKFL 120

Query: 497 TLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISS 556
            LS   L+ S        N+ ++ L          E            L       +   
Sbjct: 121 GLSTTHLEKSSVLPIAHLNISKVLLVLGETYGE-KEDPEGLQDFNTESLHIVFPTNKEFH 179

Query: 557 DWGKCPNLGTFDVSVNNI-----------IGSLPPEIGDSSQLHVIDLSANHIIGKIPSE 605
                      ++ ++NI             S+  ++  + +L  + L+           
Sbjct: 180 FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR 239

Query: 606 IGKL---SSLIKLILRRNQLFGQLPSELG-----SLIQLEYLDLSSNRLSNSIPRSLGNL 657
           I +L   +++    +   +L GQL          SL  L    + S+             
Sbjct: 240 ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIF 299

Query: 658 VKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNN 717
             ++  N + +       +   K+     LD S+N L   +     ++  LE L L  N 
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359

Query: 718 LS--DFIPRCFEEMNGLLYIDISYNELHGPIPNST 750
           L     I     +M  L  +DIS N +        
Sbjct: 360 LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 92.2 bits (229), Expect = 1e-19
 Identities = 52/245 (21%), Positives = 99/245 (40%), Gaps = 10/245 (4%)

Query: 48  LQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFP 107
           LQ     ++      N   +         +     +  SI+     + G    + +  F 
Sbjct: 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS 300

Query: 108 HLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQF 167
           ++   +  V+    +       IS   +LD S+N  + T+    G+L+ L+ L L  NQ 
Sbjct: 301 NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360

Query: 168 SGRIPPQIG---HLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPPSL 223
              +         +  ++ L + +N +S            SL  L ++SN L  +I   L
Sbjct: 361 K-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419

Query: 224 GNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPL-FLGNLTNLDTLYL 282
                + +L LH+N +  SIP ++  L++L  L + +N+L  S+P      LT+L  ++L
Sbjct: 420 --PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWL 475

Query: 283 RNNSF 287
             N +
Sbjct: 476 HTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 65.3 bits (159), Expect = 5e-11
 Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 10/189 (5%)

Query: 590 VIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNS 649
           ++D S N +I  +P ++        L + +N +     S++ SL +L  L +S NR+   
Sbjct: 4   LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL 60

Query: 650 IPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIP--SQICNMRS 707
                    +L YL+LS N+ + +I       ++L  LDLS N     +P   +  NM  
Sbjct: 61  DISVFKFNQELEYLDLSHNK-LVKISCH--PTVNLKHLDLSFNAF-DALPICKEFGNMSQ 116

Query: 708 LEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLC 767
           L+ L LS  +L          +N    + +   E +G   +     D   E+L       
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNI-SKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175

Query: 768 GDIKGFQSC 776
            +       
Sbjct: 176 KEFHFILDV 184

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  150 bits (380), Expect = 5e-39
 Identities = 94/383 (24%), Positives = 148/383 (38%), Gaps = 43/383 (11%)

Query: 107 PHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSAN 165
            H+ Y+DL +N I  +       +  L++L +   +    I       LS L  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 166 QFSGRIPPQI-GHLSYIEALHLFKNQL-SGPIPHEV-GGLSSLNELALTSNFLKGSIPPS 222
           QF  ++       L+ +E L L +  L    +       L+SL  L L  N +K  I P+
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPA 147

Query: 223 --LGNLTNLAILYLHNNSLSGSIPSEI---GNLKSLSSLALGNNKLCGSIPLFLG----- 272
               N+    +L L  N +  SI  E       K  + L L +  L      +LG     
Sbjct: 148 SFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206

Query: 273 ---NLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILE-------------LGENRLNGSIP 316
                T++ TL L  N F  S+     +  + + ++              G         
Sbjct: 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266

Query: 317 LSLGNL--TNLDTLYLYTNSLSGSIPSEI-GNLKSLSGLELADNELSSSIPHYLGNLTNL 373
            +   L  + + T  L  + +  ++   +  +   L  L LA NE++    +    LT+L
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325

Query: 374 AAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSENKLSGSIPH-SLGNLTNLAILYLHSNTL 431
               L +N L  SI S +  NL  L  LDLS N +  ++   S   L NL  L L +N  
Sbjct: 326 LKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTN-Q 382

Query: 432 LGSIPREI-GNLKSLFELQLGDN 453
           L S+P  I   L SL ++ L  N
Sbjct: 383 LKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  145 bits (368), Expect = 2e-37
 Identities = 78/406 (19%), Positives = 135/406 (33%), Gaps = 42/406 (10%)

Query: 157 LKFLYLSANQFSGRIPPQ-IGHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNF 214
           + ++ LS N  +  +       L  ++ L + +      I +    GLSSL  L L  N 
Sbjct: 32  VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 215 LKGSIPPS-LGNLTNLAILYLHNNSL-SGSIPSEI-GNLKSLSSLALGNNKLCGSIPL-- 269
               +       L NL +L L   +L    +       L SL  L L +N +   I    
Sbjct: 91  FL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI-KKIQPAS 148

Query: 270 FLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLY 329
           F  N+     L L  N   S    ++ N +      L               L+++    
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL--------------RLSSITLQD 194

Query: 330 LYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPS 389
           +    L            S++ L+L+ N    S+     +                 I S
Sbjct: 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT-----------KIQS 243

Query: 390 EIGNLKSLSNLDLSENKLSGSIPHSLGNL--TNLAILYLHSNTLLGSIPREI-GNLKSLF 446
            I +                    +   L  + +    L  + +  ++ + +  +   L 
Sbjct: 244 LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI-FALLKSVFSHFTDLE 302

Query: 447 ELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGS 506
           +L L  N+++    ++   LTH+  L L  N L  +      NL KL +L LS N ++ +
Sbjct: 303 QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-A 361

Query: 507 IPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNF 550
           + +     L NL  L L+ N L       F     L  I L  N +
Sbjct: 362 LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  145 bits (367), Expect = 2e-37
 Identities = 90/407 (22%), Positives = 151/407 (37%), Gaps = 40/407 (9%)

Query: 323 TNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYL-GNLTNLAAFYLYKN 381
            +++ + L  NS++    +    L+ L  L++        I +     L++L    L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 382 SLSGSIPSEI-GNLKSLSNLDLSENKL-SGSIPH-SLGNLTNLAILYLHSNTLLGSIPRE 438
                + +     L +L  L L++  L    +       LT+L +L L  N +    P  
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 439 I-GNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLT 497
              N++    L L  NK+ +     L N        L               L  +T+  
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL--------------RLSSITLQD 194

Query: 498 LSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFI-DLSHNNFYGQIS 555
           +++  L      N    T++  L L+ N    ++++ F      T I  L  +N Y   S
Sbjct: 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS 254

Query: 556 SDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI-GKLSSLIK 614
           S          F    N     L       S +   DLS + I   +   +    + L +
Sbjct: 255 SFGHTN-----FKDPDNFTFKGLEA-----SGVKTCDLSKSKI-FALLKSVFSHFTDLEQ 303

Query: 615 LILRRNQLFGQLPSE-LGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQE 673
           L L +N++  ++       L  L  L+LS N L +   R   NL KL  L+LS N  I+ 
Sbjct: 304 LTLAQNEI-NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IRA 361

Query: 674 IPIKL-EKLIHLSELDLSHNFLGKEIPSQI-CNMRSLEMLNLSHNNL 718
           +  +    L +L EL L  N L K +P  I   + SL+ + L  N  
Sbjct: 362 LGDQSFLGLPNLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  140 bits (354), Expect = 1e-35
 Identities = 76/370 (20%), Positives = 131/370 (35%), Gaps = 40/370 (10%)

Query: 396 SLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDNK 454
            ++ +DLS N ++     S   L +L  L +   T    I       L SL  L+L  N+
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 455 LSNSISHSLGNLTHMTLLALYDNAL-SGVIPEEL-GNLVKLTMLTLSDNQLQGSIPN--L 510
                + +   L ++ +L L    L   V+       L  L ML L DN ++   P    
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 511 RNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLS-HNNFYGQISSDWGKCPNLGTFDV 569
            N+     L L  N +     E         F  L   +     ++  W      G    
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF- 209

Query: 570 SVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSE 629
                          ++ +  +DLS N     +        +  K+          + S 
Sbjct: 210 --------------KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255

Query: 630 LGSLI---------------QLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEI 674
            G                   ++  DLS +++   +     +   L  L L+ N+ I +I
Sbjct: 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKI 314

Query: 675 PIK-LEKLIHLSELDLSHNFLGKEIPSQIC-NMRSLEMLNLSHNNLSDFIPRCFEEMNGL 732
                  L HL +L+LS NFL   I S++  N+  LE+L+LS+N++     + F  +  L
Sbjct: 315 DDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL 373

Query: 733 LYIDISYNEL 742
             + +  N+L
Sbjct: 374 KELALDTNQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 70.2 bits (172), Expect = 1e-12
 Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 8/165 (4%)

Query: 586 SQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSEL-GSLIQLEYLDLSSN 644
           + ++ +DLS N I     +   +L  L  L + +      + +     L  L  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 645 RLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIK---LEKLIHLSELDLSHNFLGKEIPSQ 701
           +       +   L  L  L L+    +    +     + L  L  L L  N + K  P+ 
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 702 I-CNMRSLEMLNLSHNNLSDFIPRCFEEMNG--LLYIDISYNELH 743
              NMR   +L+L+ N +            G     + +S   L 
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ 193

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 63.2 bits (154), Expect = 2e-10
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 636 LEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFL 694
           + Y+DLS N ++     S   L  L +L +        I       L  L  L L +N  
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 695 GKEIPSQI-CNMRSLEMLNLSHNNLSDFI--PRCFEEMNGLLYIDISYNELHGPIPNSTA 751
             ++ +     + +LE+L L+  NL   +     F+ +  L  + +  N +   I  ++ 
Sbjct: 92  -LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK-IQPASF 149

Query: 752 FS 753
           F 
Sbjct: 150 FL 151

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 11/119 (9%)

Query: 640 DLSSNRLSN--SIPRSLGNLVKLHYLNLSTNQFIQEIPIK-LEKLIHLSELDLSHNFLGK 696
              +  L     +P  +      +Y++LS N  I E+      +L  L  L +     G 
Sbjct: 16  ICINRGLHQVPELPAHV------NYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGL 68

Query: 697 EIPSQIC-NMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSD 754
            I +     + SL +L L +N         F  +  L  + ++   L G + +   F  
Sbjct: 69  VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP 127

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  143 bits (363), Expect = 9e-37
 Identities = 70/424 (16%), Positives = 142/424 (33%), Gaps = 45/424 (10%)

Query: 131 SKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQ 190
                   ++     T       L+ L  L    +  +      I  L+ +  L    N 
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNN 75

Query: 191 LSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNL 250
           ++     ++   ++L  LA  SN L  ++   +  LT L  L    N L+     ++   
Sbjct: 76  ITTL---DLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT---KLDVSQN 126

Query: 251 KSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENR 310
             L+ L    N L     + + + T L  L    N   + +   +     L+ L+   N+
Sbjct: 127 PLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK 181

Query: 311 LNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNL 370
           +     L +     L+ L   TN+++  +   +     L+ L+ + N+L + I   +  L
Sbjct: 182 ITE---LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKL-TEID--VTPL 232

Query: 371 TNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNT 430
           T L  F    N L+  +   +  L  L+ L   +  L   I   L + T L         
Sbjct: 233 TQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCR 286

Query: 431 LLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNL 490
            +  +  ++ +   L+ L      ++      L     +  L L +  L+ +   ++ + 
Sbjct: 287 KIKEL--DVTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELTEL---DVSHN 338

Query: 491 VKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFG-----IHPKLTFIDL 545
            KL  L+  +  +Q    ++  +  L               E+       I      +D 
Sbjct: 339 TKLKSLSCVNAHIQ-DFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQ 397

Query: 546 SHNN 549
             N 
Sbjct: 398 FGNP 401

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  134 bits (338), Expect = 2e-33
 Identities = 74/436 (16%), Positives = 145/436 (33%), Gaps = 47/436 (10%)

Query: 102 SFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLY 161
           S      L  LD   + I  +    I  ++ L  L  +SN+ + T+   +   + L +L 
Sbjct: 37  SEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLA 91

Query: 162 LSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPP 221
             +N+ +      +  L+ +  L+   N+L+     +V     L  L    N L   I  
Sbjct: 92  CDSNKLTN---LDVTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT-EID- 143

Query: 222 SLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLY 281
            + + T L  L  H N     +   +     L++L    NK+     L +     L+ L 
Sbjct: 144 -VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKI---TELDVSQNKLLNRLN 197

Query: 282 LRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPS 341
              N+ +     ++     L+ L+   N+L     + +  LT L       N L+  +  
Sbjct: 198 CDTNNITK---LDLNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLT-ELD- 249

Query: 342 EIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLD 401
            +  L  L+ L     +L      +   L      Y            ++ +   L  LD
Sbjct: 250 -VSTLSKLTTLHCIQTDLLEIDLTHNTQLI-----YFQAEGCRKIKELDVTHNTQLYLLD 303

Query: 402 LSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISH 461
                ++  +   L     L  LYL++   L  +   + +   L  L   +  +    S 
Sbjct: 304 CQAAGIT-ELD--LSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAHIQ-DFS- 355

Query: 462 SLGNLTHMTLLALYDNALSGVIPEELGNL-----VKLTMLTLSDNQLQGSIPNLRNLTNL 516
           S+G +  +      +     +  E L N      V   +L    N +    P    + + 
Sbjct: 356 SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMN-IEPGDGGVYDQ 414

Query: 517 IRLRLNRNHLTCNISE 532
               +   +L+ +   
Sbjct: 415 ATNTITWENLSTDNPA 430

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  131 bits (332), Expect = 1e-32
 Identities = 72/409 (17%), Positives = 140/409 (34%), Gaps = 41/409 (10%)

Query: 182 EALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSG 241
            +      ++          L++L  L   ++ +   +   +  LT L  L   +N+++ 
Sbjct: 21  ASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNNIT- 77

Query: 242 SIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSL 301
           ++   +    +L+ LA  +NKL     L +  LT L  L    N  +     ++     L
Sbjct: 78  TLD--LSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLTK---LDVSQNPLL 129

Query: 302 SILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSS 361
           + L    N L     + + + T L  L  + N     +   +     L+ L+ + N+++ 
Sbjct: 130 TYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE 184

Query: 362 SIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNL 421
                +     L       N+++  +   +     L+ LD S NKL+  I   +  LT L
Sbjct: 185 LD---VSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQL 235

Query: 422 AILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSG 481
                  N  L  +   +  L  L  L      L          L +             
Sbjct: 236 TYFDCSVN-PLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIY-----FQAEGCRK 287

Query: 482 VIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLT 541
           +   ++ +  +L +L      +   +  L     L+ L LN   LT         + KL 
Sbjct: 288 IKELDVTHNTQLYLLDCQAAGIT-ELD-LSQNPKLVYLYLNNTELT---ELDVSHNTKLK 342

Query: 542 FIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHV 590
            +   + +   Q  S  GK P L     +    I ++P E   ++ L +
Sbjct: 343 SLSCVNAHI--QDFSSVGKIPALNNNFEAEGQTI-TMPKETLTNNSLTI 388

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  130 bits (330), Expect = 2e-32
 Identities = 82/422 (19%), Positives = 149/422 (35%), Gaps = 42/422 (9%)

Query: 228 NLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSF 287
           N A        +  +       L +L+SL   N+ +   +   +  LT L  L   +N+ 
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSI-TDMT-GIEKLTGLTKLICTSNNI 76

Query: 288 SSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLK 347
           ++    ++    +L+ L    N+L     L +  LT L  L   TN L+     ++    
Sbjct: 77  TT---LDLSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLT---KLDVSQNP 127

Query: 348 SLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKL 407
            L+ L  A N L+      + + T L     + N     +   +     L+ LD S NK+
Sbjct: 128 LLTYLNCARNTLTE---IDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKI 182

Query: 408 SGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLT 467
           +      +     L  L   +N  +  +   +     L  L    NKL+      +  LT
Sbjct: 183 TEL---DVSQNKLLNRLNCDTN-NITKLD--LNQNIQLTFLDCSSNKLT---EIDVTPLT 233

Query: 468 HMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLT 527
            +T      N L+ +   ++  L KLT L      L   I  L + T LI  +       
Sbjct: 234 QLTYFDCSVNPLTEL---DVSTLSKLTTLHCIQTDLL-EID-LTHNTQLIYFQAEGCRKI 288

Query: 528 CNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQ 587
             +      + +L  +D            D  + P L    ++ N  +  L   +  +++
Sbjct: 289 KEL--DVTHNTQLYLLDCQAAGI---TELDLSQNPKLVYLYLN-NTELTELD--VSHNTK 340

Query: 588 LHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLS 647
           L  +     HI  +  S +GK+ +L        Q    +P E  +   L  + +S + L 
Sbjct: 341 LKSLSCVNAHI--QDFSSVGKIPALNNNFEAEGQTI-TMPKETLTNNSL-TIAVSPDLLD 396

Query: 648 NS 649
             
Sbjct: 397 QF 398

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  129 bits (325), Expect = 7e-32
 Identities = 75/395 (18%), Positives = 148/395 (37%), Gaps = 42/395 (10%)

Query: 349 LSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLS 408
            +    A  E+ ++       L  L +   + +S++    + I  L  L+ L  + N ++
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNIT 77

Query: 409 GSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTH 468
            ++   L   TNL  L   SN  L ++   +  L  L  L    NKL+      +     
Sbjct: 78  -TLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLNCDTNKLT---KLDVSQNPL 128

Query: 469 MTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTC 528
           +T L    N L+ +   ++ +  +LT L    N+   +  ++   T L  L  + N +T 
Sbjct: 129 LTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKI-TKLDVTPQTQLTTLDCSFNKIT- 183

Query: 529 NISESFGIHPKLTFIDLSHNNFYGQISS-DWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQ 587
                   +  L  ++   N     I+  D  +   L   D S +N +  +   +   +Q
Sbjct: 184 --ELDVSQNKLLNRLNCDTN----NITKLDLNQNIQLTFLDCS-SNKLTEID--VTPLTQ 234

Query: 588 LHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLS 647
           L   D S N +  ++   +  LS L  L   +  L   L  +L    QL Y      R  
Sbjct: 235 LTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDL---LEIDLTHNTQLIYFQAEGCRKI 288

Query: 648 NSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRS 707
             +   + +  +L+ L+      I E+ +   +   L  L L++  L  E+   + +   
Sbjct: 289 KELD--VTHNTQLYLLDCQAAG-ITELDLS--QNPKLVYLYLNNTEL-TELD--VSHNTK 340

Query: 708 LEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 742
           L+ L+  + ++ DF      ++  L     +  + 
Sbjct: 341 LKSLSCVNAHIQDFSS--VGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  119 bits (299), Expect = 2e-28
 Identities = 57/348 (16%), Positives = 117/348 (33%), Gaps = 37/348 (10%)

Query: 98  LHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSML 157
           +     S   +L YL    N++  +    +  ++KL YL+  +N  +  +   +    +L
Sbjct: 76  ITTLDLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLT-KLD--VSQNPLL 129

Query: 158 KFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKG 217
            +L  + N  +      + H + +  L    N+    +   V   + L  L  + N +  
Sbjct: 130 TYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE 184

Query: 218 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNL 277
                +     L  L    N+++  +   +     L+ L   +NKL   I +    LT L
Sbjct: 185 L---DVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EIDV--TPLTQL 235

Query: 278 DTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSG 337
                  N  +    S    L  L+ L   +  L     + L + T L            
Sbjct: 236 TYFDCSVNPLTELDVS---TLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCRKIK 289

Query: 338 SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSL 397
            +  ++ +   L  L+     + + +   L     L   YL    L+  +   + +   L
Sbjct: 290 EL--DVTHNTQLYLLDCQAAGI-TELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKL 341

Query: 398 SNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSL 445
            +L      +      S+G +  L   +      + ++P+E     SL
Sbjct: 342 KSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTI-TMPKETLTNNSL 386

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  144 bits (365), Expect = 3e-36
 Identities = 96/533 (18%), Positives = 178/533 (33%), Gaps = 81/533 (15%)

Query: 242 SIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSL 301
            I S +        + +               L N   +  +N++      + + + + +
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 302 SILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI-GNLKSLSGLELADNELS 360
            +L L + ++      +      +  LY+  N++   +P  +  N+  L+ L L  N+LS
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS 136

Query: 361 SSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSENKLSGSIPHSLGNLT 419
                                    S+P  I  N   L+ L +S N L      +    T
Sbjct: 137 -------------------------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 171

Query: 420 NLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNAL 479
           +L  L L SN  L  +   +  + SLF   +  N LS     +L     +  L    N++
Sbjct: 172 SLQNLQLSSN-RLTHVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSI 223

Query: 480 SGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPK 539
           + V        V+LT+L L  N L      L N   L+ + L+ N L   +   F    +
Sbjct: 224 NVV---RGPVNVELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 279

Query: 540 LTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHII 599
           L  + +S+N                          + +L         L V+DLS NH++
Sbjct: 280 LERLYISNNR-------------------------LVALNLYGQPIPTLKVLDLSHNHLL 314

Query: 600 GKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVK 659
             +     +   L  L L  N +   L   L +   L+ L LS N    +  R+L     
Sbjct: 315 -HVERNQPQFDRLENLYLDHNSI-VTLK--LSTHHTLKNLTLSHNDWDCNSLRAL--FRN 368

Query: 660 LHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNF----------LGKEIPSQICNMRSLE 709
           +    +       +I  +LE  +   E D  +            + +++        + +
Sbjct: 369 VARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATD 428

Query: 710 MLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQG 762
            +N   +       +    + G   ++   NEL   +   T       + LQG
Sbjct: 429 TINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQG 481

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  143 bits (362), Expect = 6e-36
 Identities = 90/528 (17%), Positives = 174/528 (32%), Gaps = 48/528 (9%)

Query: 46  TSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVGLKG--------- 96
              Q ++     P +   ++     C ++ +H +   +       ++ L           
Sbjct: 2   GGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS 61

Query: 97  ---TLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-G 152
               L      SF  +  L+L   QI  I          ++ L +  N+    +PP +  
Sbjct: 62  TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQ 120

Query: 153 NLSMLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELAL 210
           N+ +L  L L  N  S  +P  I  +   +  L +  N L   I  +     +SL  L L
Sbjct: 121 NVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQL 178

Query: 211 TSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLF 270
           +SN L   +      + +L    +  N L     S +    ++  L   +N +     + 
Sbjct: 179 SSNRLT-HVDL--SLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINV---VR 227

Query: 271 LGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYL 330
                 L  L L++N+ +    + + N   L  ++L  N L   +      +  L+ LY+
Sbjct: 228 GPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285

Query: 331 YTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSE 390
             N L  ++      + +L  L+L+ N L   +         L   YL  NS+  ++   
Sbjct: 286 SNNRLV-ALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIV-TLK-- 340

Query: 391 IGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQ- 449
           +    +L NL LS N    +   +L    N+A   +        I  ++ +     E   
Sbjct: 341 LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEHGLCCKESDK 398

Query: 450 ---------LGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSD 500
                    +    +   +  + G  +    +    +    +  +    L     L    
Sbjct: 399 PYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEV 458

Query: 501 NQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHN 548
           N+L+  +  L N        L   H   + +      PK      S N
Sbjct: 459 NELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDN 506

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.4 bits (115), Expect = 8e-06
 Identities = 13/108 (12%), Positives = 38/108 (35%)

Query: 635 QLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFL 694
           Q  Y           I  +L      + +++           +   L +   +   ++ +
Sbjct: 4   QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63

Query: 695 GKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 742
            K   + + + R +E+LNL+   + +     F   + +  + + +N +
Sbjct: 64  RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 111

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  143 bits (363), Expect = 4e-36
 Identities = 76/436 (17%), Positives = 148/436 (33%), Gaps = 46/436 (10%)

Query: 196 PHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSS 255
              +   S  N ++ T          +       A+   + N     +      +   S 
Sbjct: 10  NFSLSQNSFYNTISGTYA----DYFSAWDKWEKQALPGENRNEAVSLLKE--CLINQFSE 63

Query: 256 LALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSI 315
           L L    L  S+P  L     +  L +  N+  S +P    +L+ L   +  +NRL+ ++
Sbjct: 64  LQLNRLNLS-SLPDNLP--PQITVLEITQNALIS-LPELPASLEYL---DACDNRLS-TL 115

Query: 316 PLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAA 375
           P    +L +LD   +  N L+  +P     L+ ++     +N+L+  +P    +L  L  
Sbjct: 116 PELPASLKHLD---VDNNQLT-MLPELPALLEYIN---ADNNQLTM-LPELPTSLEVL-- 165

Query: 376 FYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNL----AILYLHSNTL 431
             +  N L+  +P    +L++L   D+S N L  S+P       +            N  
Sbjct: 166 -SVRNNQLT-FLPELPESLEAL---DVSTNLLE-SLPAVPVRNHHSEETEIFFRCREN-R 218

Query: 432 LGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLV 491
           +  IP  I +L     + L DN LS+ I  SL   T            S +   +   L 
Sbjct: 219 ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS-MSDGQQNTLH 277

Query: 492 KLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFY 551
           +     ++    +    ++  + +      + N  +  +          T    + + F 
Sbjct: 278 RPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLD-----RLSDTVSARNTSGFR 332

Query: 552 GQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHII-----GKIPSEI 606
            Q+++   K             +         D   L   +L    ++     G   ++ 
Sbjct: 333 EQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDT 392

Query: 607 GKLSSLIKLILRRNQL 622
           G L SL + + R   L
Sbjct: 393 GALLSLGREMFRLEIL 408

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  126 bits (317), Expect = 2e-30
 Identities = 75/344 (21%), Positives = 125/344 (36%), Gaps = 36/344 (10%)

Query: 386 SIPSEIGNLKSLSNLDLSENKLSG---SIPHSLGNLTNLAILYLHSNTLLGSIPREIGNL 442
           SI   I N  SLS  +   N +SG       +       A+   + N  +  +      +
Sbjct: 2   SIMLPINNNFSLSQ-NSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE--CLI 58

Query: 443 KSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQ 502
               ELQL    LS S+  +L     +T+L +  NAL   +PE   +L     L   DN+
Sbjct: 59  NQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPASL---EYLDACDNR 111

Query: 503 LQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCP 562
           L  ++P L    +L  L ++ N LT  + E       L +I+  +N    Q++       
Sbjct: 112 LS-TLPEL--PASLKHLDVDNNQLTM-LPELPA---LLEYINADNN----QLTMLPELPT 160

Query: 563 NLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSL----IKLILR 618
           +L    V  NN +  LP        L  +D+S N +   +P+   +        I    R
Sbjct: 161 SLEVLSVR-NNQLTFLPELPE---SLEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCR 215

Query: 619 RNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL 678
            N++   +P  + SL     + L  N LS+ I  SL         +     F   +    
Sbjct: 216 ENRI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF--SMSDGQ 272

Query: 679 EKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFI 722
           +  +H    D    +  +   S +  +          N  S F+
Sbjct: 273 QNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFL 316

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  125 bits (315), Expect = 5e-30
 Identities = 69/393 (17%), Positives = 128/393 (32%), Gaps = 37/393 (9%)

Query: 108 HLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQF 167
             A      N+   ++      I++   L L+  + S ++P  +     +  L ++ N  
Sbjct: 38  KQALPGENRNEAVSLLK--ECLINQFSELQLNRLNLS-SLPDNLPPQ--ITVLEITQNAL 92

Query: 168 SGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLT 227
              +P     L Y   L    N+LS  +P      +SL  L + +N L   +P     L 
Sbjct: 93  I-SLPELPASLEY---LDACDNRLST-LPEL---PASLKHLDVDNNQLT-MLPELPALLE 143

Query: 228 NLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSF 287
               +   NN L+  +P    +L+ LS   + NN+L   +P    +L  LD   +  N  
Sbjct: 144 Y---INADNNQLT-MLPELPTSLEVLS---VRNNQL-TFLPELPESLEALD---VSTNLL 192

Query: 288 SSSIPSEIGNLKSLS----ILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI 343
             S+P+                  ENR+   IP ++ +L    T+ L  N LS  I   +
Sbjct: 193 -ESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL 250

Query: 344 GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLS 403
               +           S S      N  +             +  S++  +      +  
Sbjct: 251 SQQTAQPDYHGPRIYFSMSDGQQ--NTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEH 308

Query: 404 ENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSL 463
            N  S +    L +  +           + +   ++     L +        +       
Sbjct: 309 ANTFS-AFLDRLSDTVSARNTSGFREQ-VAAWLEKLSASAELRQQSFAVAADATESCEDR 366

Query: 464 GNLT--HMTLLALYDNALSGVIPEELGNLVKLT 494
             LT  ++    L   A  G+   + G L+ L 
Sbjct: 367 VALTWNNLRKTLLVHQASEGLFDNDTGALLSLG 399

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  119 bits (299), Expect = 4e-28
 Identities = 58/311 (18%), Positives = 110/311 (35%), Gaps = 34/311 (10%)

Query: 458 SISHSLGNLTHMTLLALYDNALSGVIPE---ELGNLVKLTMLTLSDNQLQGSIPNLRNLT 514
           SI   + N   ++  + Y N +SG   +         K  +   + N+    +     + 
Sbjct: 2   SIMLPINNNFSLSQNSFY-NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL-IN 59

Query: 515 NLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNI 574
               L+LNR +L+ ++ ++    P++T ++++ N     +        +L   D   +N 
Sbjct: 60  QFSELQLNRLNLS-SLPDNLP--PQITVLEITQNAL-ISLPELPA---SLEYLDAC-DNR 111

Query: 575 IGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLI 634
           + +LP        L  +D+  N +   +P     L     +    NQL   LP    SL 
Sbjct: 112 LSTLPELPA---SLKHLDVDNNQLT-MLPELPALLE---YINADNNQL-TMLPELPTSL- 162

Query: 635 QLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSE----LDLS 690
             E L + +N+L   +P    +L     L++STN  ++ +P    +  H  E        
Sbjct: 163 --EVLSVRNNQL-TFLPELPESL---EALDVSTNL-LESLPAVPVRNHHSEETEIFFRCR 215

Query: 691 HNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNST 750
            N +   IP  I ++     + L  N LS  I     +                      
Sbjct: 216 ENRI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274

Query: 751 AFSDALMEALQ 761
                L +A+ 
Sbjct: 275 TLHRPLADAVT 285

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  115 bits (288), Expect = 9e-27
 Identities = 60/330 (18%), Positives = 112/330 (33%), Gaps = 33/330 (10%)

Query: 106 FPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSAN 165
            P +  L++  N +   +P    +   L+YLD   N  S T+P    +   LK L +  N
Sbjct: 79  PPQITVLEITQNAL-ISLPELPAS---LEYLDACDNRLS-TLPELPAS---LKHLDVDNN 130

Query: 166 QFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGN 225
           Q +  +P     L   E ++   NQL+  +P      +SL  L++ +N L   +P    +
Sbjct: 131 QLT-MLPELPALL---EYINADNNQLTM-LPEL---PTSLEVLSVRNNQLT-FLPELPES 181

Query: 226 LTNLAILYLHNNSLSGSIPSEIGNLKSLSS----LALGNNKLCGSIPLFLGNLTNLDTLY 281
           L     L +  N L  S+P+                   N++   IP  + +L    T+ 
Sbjct: 182 LE---ALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI-THIPENILSLDPTCTII 236

Query: 282 LRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPS 341
           L +N  SS I   +    +           + S      N  +       T     +  S
Sbjct: 237 LEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ--NTLHRPLADAVTAWFPENKQS 294

Query: 342 EIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLD 401
           ++  +      E   N   S+    L +  +      ++  ++  +      L + + L 
Sbjct: 295 DVSQIWHAFEHEEHANTF-SAFLDRLSDTVSARNTSGFREQVAAWLE----KLSASAELR 349

Query: 402 LSENKLSGSIPHSLGNLTNLAILYLHSNTL 431
                ++     S  +   L    L    L
Sbjct: 350 QQSFAVAADATESCEDRVALTWNNLRKTLL 379

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 52.3 bits (125), Expect = 5e-07
 Identities = 28/236 (11%), Positives = 67/236 (28%), Gaps = 14/236 (5%)

Query: 104 SSFPHLAYLDLQVNQIFGIIPPQIGNISKLK----YLDLSSNSFSGTIPPQIGNLSMLKF 159
                L  LD+  N +   +P         +    +     N  +  IP  I +L     
Sbjct: 177 ELPESLEALDVSTNLL-ESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCT 234

Query: 160 LYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSI 219
           + L  N  S RI   +   +     H  +   S     +             + +   + 
Sbjct: 235 IILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ--NTLHRPLADAVTAWFPENK 292

Query: 220 PPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDT 279
              +  + +      H N+ S +    + +  S  + +    +    +  +L  L+    
Sbjct: 293 QSDVSQIWHAFEHEEHANTFS-AFLDRLSDTVSARNTSGFREQ----VAAWLEKLSASAE 347

Query: 280 LYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSL 335
           L  ++ + ++       +  +L+   L +  L            +   L      +
Sbjct: 348 LRQQSFAVAADATESCEDRVALTWNNLRKTLLV-HQASEGLFDNDTGALLSLGREM 402

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  138 bits (350), Expect = 2e-34
 Identities = 93/469 (19%), Positives = 164/469 (34%), Gaps = 38/469 (8%)

Query: 275 TNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSL-GNLTNLDTLYLYTN 333
                L L  NS S     +I  L  L +L L  NR+  S+   +     +L+ L +  N
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHN 110

Query: 334 SLSGSIPSEIGNLKSLSGLELADNELSS-SIPHYLGNLTNLAAFYLYKNSLSGSIPSEIG 392
            L  +I      + SL  L+L+ N+     +    GNLT L    L            + 
Sbjct: 111 RLQ-NISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVA 167

Query: 393 NLK-SLSNLDLSENKLSGSIPHSLGNL-TNLAILYLHSNTLLGSIPREIGNLKSLFELQL 450
           +L  S   LDL    + G    SL    T +  L  H N+L         ++ +L  LQL
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVN--MSVNALGHLQL 225

Query: 451 GDNKLSNSISHSLGN----------LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSD 500
            + KL++     L            L ++TL  +       V   +      +  L + +
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285

Query: 501 NQLQGSIP------NLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQI 554
             +   I       +   L +L+   +       +    + +  ++    LS ++     
Sbjct: 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH 345

Query: 555 SSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS-SQLHVIDLSANHIIGKIPSEIGKLSSLI 613
                   +    + +  N+      +   +  +L  + L  N +            ++ 
Sbjct: 346 MVCPPSPSSFTFLNFT-QNVFTDSVFQGCSTLKRLQTLILQRNGL-KNFFKVALMTKNMS 403

Query: 614 KLILRRNQL----FGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQ 669
            L      L                 +  L+LSSN L+ S+ R L    K+  L+L  N+
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNR 461

Query: 670 FIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQIC-NMRSLEMLNLSHNN 717
            I  IP  +  L  L EL+++ N L K +P  +   + SL+ + L  N 
Sbjct: 462 -IMSIPKDVTHLQALQELNVASNQL-KSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  133 bits (336), Expect = 8e-33
 Identities = 84/462 (18%), Positives = 165/462 (35%), Gaps = 30/462 (6%)

Query: 111 YLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSG 169
            L L  N I  +  P I  +S+L+ L LS N    ++   +      L++L +S N+   
Sbjct: 56  ALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQN 114

Query: 170 RIPPQIGHLSYIEALHLFKNQL-SGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNL-T 227
            I      ++ +  L L  N     P+  E G L+ L  L L++   +      + +L  
Sbjct: 115 -ISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHL 171

Query: 228 NLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLT----NLDTLYLR 283
           +  +L L +  + G     +    +     + +     S+ + +         L  + L 
Sbjct: 172 SCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLN 231

Query: 284 NNSFSSSIPSEIGNLKSLSILELGENRLNGSIP-----LSLGNLTNLDTLYLYTNSLSGS 338
           + +    +       +  ++L +    +  +               ++ L +Y  +++  
Sbjct: 232 DENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITER 291

Query: 339 IPSEIGN-----LKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGN 393
           I  E        LKSL    + +     S          +    L  +           +
Sbjct: 292 IDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPS 351

Query: 394 LKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDN 453
             S + L+ ++N  + S+      L  L  L L  N  L +  +     K++  L+  D 
Sbjct: 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDV 410

Query: 454 KLSNSISHSLGNLTH----MTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN 509
            L++  SH+          + +L L  N L+G +   L    K+ +L L +N++  SIP 
Sbjct: 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPK 467

Query: 510 -LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNF 550
            + +L  L  L +  N L       F     L +I L  N +
Sbjct: 468 DVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  133 bits (336), Expect = 9e-33
 Identities = 95/487 (19%), Positives = 166/487 (34%), Gaps = 56/487 (11%)

Query: 181 IEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSL-GNLTNLAILYLHNNSL 239
            +AL L +N +S     ++  LS L  L L+ N ++ S+   +     +L  L + +N L
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL 112

Query: 240 SGSIPSEIGNLKSLSSLALGNNKL-CGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNL 298
             +I      + SL  L L  N      +    GNLT L  L L    F       + +L
Sbjct: 113 Q-NISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL 169

Query: 299 K-SLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADN 357
             S  +L+L    + G    SL    N   L+L  +  S        ++ +L  L+L++ 
Sbjct: 170 HLSCILLDLVSYHIKGGETESLQIP-NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228

Query: 358 ELSSSIPHYLGNLT-------NLAAFYLYKNSLSGSIPSEIGNLK--------SLSNLDL 402
           +L+      L            L    L     +     ++            ++ NL +
Sbjct: 229 KLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288

Query: 403 SENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHS 462
           +E        +S   L +L I ++ +   L S          +    L  +         
Sbjct: 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC 348

Query: 463 LGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNL-RNLTNLIRLRL 521
             + +  T L    N  +  + +    L +L  L L  N L+ +   +     N+  L  
Sbjct: 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLET 407

Query: 522 NRNHLTC----NISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGS 577
               L          +      +  ++LS N     ++           F          
Sbjct: 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSN----MLTG--------SVFR--------C 447

Query: 578 LPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLE 637
           LPP      ++ V+DL  N  I  IP ++  L +L +L +  NQL          L  L+
Sbjct: 448 LPP------KVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQ 500

Query: 638 YLDLSSN 644
           Y+ L  N
Sbjct: 501 YIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  126 bits (318), Expect = 1e-30
 Identities = 93/425 (21%), Positives = 154/425 (36%), Gaps = 27/425 (6%)

Query: 97  TLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSF-SGTIPPQIGNLS 155
           +L    F     L YLD+  N++  I       ++ L++LDLS N F    +  + GNL+
Sbjct: 90  SLDFHVFLFNQDLEYLDVSHNRLQNI---SCCPMASLRHLDLSFNDFDVLPVCKEFGNLT 146

Query: 156 MLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFL 215
            L FL LSA +F       + HL     L    +        E   + +   L L  +  
Sbjct: 147 KLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN 206

Query: 216 KGSIPPSLGNLTNLAILYLHNNSLSG-------SIPSEIGNLKSLSSLALGNNKLCGSIP 268
                    ++  L  L L N  L+        +  SE+    +L ++ L + +      
Sbjct: 207 SLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS 266

Query: 269 LFLGNL---TNLDTLYLRNNSFSSSIPSEIGN-----LKSLSILELGENRLNGSIPLSLG 320
           + L        ++ L + N + +  I  E        LKSL I  +       S      
Sbjct: 267 VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYS 326

Query: 321 NLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYK 380
               ++   L  +           +  S + L    N  + S+      L  L    L +
Sbjct: 327 VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR 386

Query: 381 NSLSGSIPSEIG---NLKSLSNLDLSENKL-SGSIPHSLGNLTNLAILYLHSNTLLGSIP 436
           N L  +         N+ SL  LD+S N L S +   +     ++ +L L SN L GS+ 
Sbjct: 387 NGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445

Query: 437 REIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTML 496
           R +     +  L L +N++  SI   + +L  +  L +  N L  V       L  L  +
Sbjct: 446 RCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYI 502

Query: 497 TLSDN 501
            L DN
Sbjct: 503 WLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 99.6 bits (248), Expect = 7e-22
 Identities = 66/422 (15%), Positives = 137/422 (32%), Gaps = 45/422 (10%)

Query: 327 TLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGS 386
            +     +L+  +P ++        L L+ N +S      +  L+ L    L  N +  S
Sbjct: 35  MVDYSNRNLT-HVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-S 90

Query: 387 IPSEI-GNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPR--EIGNLK 443
           +   +    + L  LD+S N+L  +I      + +L  L L  N     +P   E GNL 
Sbjct: 91  LDFHVFLFNQDLEYLDVSHNRLQ-NIS--CCPMASLRHLDLSFN-DFDVLPVCKEFGNLT 146

Query: 444 SLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQL 503
            L  L L   K        L  + H+ L  +  +               L    +   + 
Sbjct: 147 KLTFLGLSAAKFR---QLDLLPVAHLHLSCILLD---------------LVSYHIKGGET 188

Query: 504 QGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPN 563
           +        + +L+    +   +  N+S +   H +L+ I L+  N    ++        
Sbjct: 189 ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRG 248

Query: 564 LGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLF 623
               +V++ +I  +    +          +   +I                L +      
Sbjct: 249 PTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN--------------LTITERIDR 294

Query: 624 GQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIH 683
            +      +L  L    + +     S         +++   LS +       +       
Sbjct: 295 EEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSS 354

Query: 684 LSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDF--IPRCFEEMNGLLYIDISYNE 741
            + L+ + N     +      ++ L+ L L  N L +F  +    + M+ L  +D+S N 
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414

Query: 742 LH 743
           L+
Sbjct: 415 LN 416

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 94.2 bits (234), Expect = 4e-20
 Identities = 51/277 (18%), Positives = 97/277 (35%), Gaps = 11/277 (3%)

Query: 17  FLILFPVLDFPLIVYSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAW-FG 75
            +     L     + + + + +    K    L        +    + N T          
Sbjct: 238 LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF 297

Query: 76  IHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKY 135
            +     +   I      +     +  +S F  +    L ++    I      + S   +
Sbjct: 298 TYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF 357

Query: 136 LDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQL---- 191
           L+ + N F+ ++      L  L+ L L  N               + +L      L    
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLN 416

Query: 192 SGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLK 251
           S           S+  L L+SN L GS+   L     + +L LHNN +  SIP ++ +L+
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQ 473

Query: 252 SLSSLALGNNKLCGSIPL-FLGNLTNLDTLYLRNNSF 287
           +L  L + +N+L  S+P      LT+L  ++L +N +
Sbjct: 474 ALQELNVASNQL-KSVPDGVFDRLTSLQYIWLHDNPW 509

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  130 bits (328), Expect = 3e-33
 Identities = 67/310 (21%), Positives = 123/310 (39%), Gaps = 24/310 (7%)

Query: 157 LKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLK 216
           L+ +  S      ++P  +        L L  N+++     +   L +L+ L L +N + 
Sbjct: 33  LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 217 GSIPP-SLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLT 275
             I P +   L  L  LYL  N L   +P ++   K+L  L +  N++          L 
Sbjct: 90  -KISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLN 145

Query: 276 NLDTLYLRNNSFSSS-IPSEI-GNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTN 333
            +  + L  N   SS I +     +K LS + + +  +  +IP  L    +L  L+L  N
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGN 202

Query: 334 SLSGSIPSEI-GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIG 392
            ++  + +     L +L+ L L+ N +S+     L N  +L   +L  N L   +P  + 
Sbjct: 203 KIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260

Query: 393 NLKSLSNLDLSENKLSG------SIPHSLGNLTNLAILYLHSNTL-LGSIPREI-GNLKS 444
           + K +  + L  N +S         P       + + + L SN +    I       +  
Sbjct: 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 320

Query: 445 LFELQLGDNK 454
              +QLG+ K
Sbjct: 321 RAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  128 bits (324), Expect = 1e-32
 Identities = 67/309 (21%), Positives = 121/309 (39%), Gaps = 23/309 (7%)

Query: 252 SLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRL 311
            L  +   +  L   +P  L    +   L L+NN  +     +  NLK+L  L L  N++
Sbjct: 32  HLRVVQCSDLGL-EKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 312 NGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLT 371
           +   P +   L  L+ LYL  N L   +P ++   K+L  L + +NE++         L 
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLN 145

Query: 372 NLAAFYLYKNSL-SGSIPSEI-GNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSN 429
            +    L  N L S  I +     +K LS + +++  ++ +IP  L    +L  L+L  N
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGN 202

Query: 430 TLLGSIPREI-GNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELG 488
             +  +       L +L +L L  N +S   + SL N  H+  L L +N L   +P  L 
Sbjct: 203 -KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260

Query: 489 NLVKLTMLTLSDNQLQ-------GSIPNLRNLTNLIRLRLNRNHLTCNI--SESFGIHPK 539
           +   + ++ L +N +                  +   + L  N +        +F     
Sbjct: 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 320

Query: 540 LTFIDLSHN 548
              + L + 
Sbjct: 321 RAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  122 bits (309), Expect = 9e-31
 Identities = 63/285 (22%), Positives = 115/285 (40%), Gaps = 23/285 (8%)

Query: 276 NLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSL 335
           +L  +   +      +P ++      ++L+L  N++         NL NL TL L  N +
Sbjct: 32  HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 336 SGSIPSEI-GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GN 393
           S  I       L  L  L L+ N+L          L  L    +++N ++  +   +   
Sbjct: 89  S-KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL---RVHENEIT-KVRKSVFNG 143

Query: 394 LKSLSNLDLSENKLSGSI--PHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLG 451
           L  +  ++L  N L  S     +   +  L+ + +     + +IP+  G   SL EL L 
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQ--GLPPSLTELHLD 200

Query: 452 DNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN-L 510
            NK++   + SL  L ++  L L  N++S V    L N   L  L L++N+L   +P  L
Sbjct: 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259

Query: 511 RNLTNLIRLRLNRNHLTCNISESFGIH------PKLTFIDLSHNN 549
            +   +  + L+ N+++   S  F            + + L  N 
Sbjct: 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  120 bits (304), Expect = 4e-30
 Identities = 71/314 (22%), Positives = 116/314 (36%), Gaps = 47/314 (14%)

Query: 106 FPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSA 164
            P  A LDLQ N+I  I      N+  L  L L +N  S  I P     L  L+ LYLS 
Sbjct: 51  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSK 109

Query: 165 NQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPP-SL 223
           NQ    +P                               +L EL +  N +   +     
Sbjct: 110 NQLK-ELPE--------------------------KMPKTLQELRVHENEIT-KVRKSVF 141

Query: 224 GNLTNLAILYLHNNSL-SGSIPSEI-GNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLY 281
             L  + ++ L  N L S  I +     +K LS + + +  +  +IP   G   +L  L+
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIP--QGLPPSLTELH 198

Query: 282 LRNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIP 340
           L  N   + + +     L +L+ L L  N ++     SL N  +L  L+L  N L   +P
Sbjct: 199 LDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP 256

Query: 341 SEIGNLKSLSGLELADNELSS------SIPHYLGNLTNLAAFYLYKNSLS-GSIPSEI-G 392
             + + K +  + L +N +S+        P Y     + +   L+ N +    I      
Sbjct: 257 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316

Query: 393 NLKSLSNLDLSENK 406
            +   + + L   K
Sbjct: 317 CVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  119 bits (300), Expect = 1e-29
 Identities = 72/331 (21%), Positives = 126/331 (38%), Gaps = 43/331 (12%)

Query: 420 NLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNAL 479
           +L ++      L   +P+++        L L +NK++        NL ++  L L +N +
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 480 SGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPK 539
           S + P     LVKL  L LS NQL+     +     L  LR++ N +T      F    +
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQ 146

Query: 540 LTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHII 599
           +  ++L  N     + S        G F                   +L  I ++  +I 
Sbjct: 147 MIVVELGTN----PLKSSG---IENGAFQ---------------GMKKLSYIRIADTNI- 183

Query: 600 GKIPSEIGKLSSLIKLILRRNQLFGQLPSE-LGSLIQLEYLDLSSNRLSNSIPRSLGNLV 658
             IP   G   SL +L L  N++  ++ +  L  L  L  L LS N +S     SL N  
Sbjct: 184 TTIPQ--GLPPSLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240

Query: 659 KLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQ-------ICNMRSLEML 711
            L  L+L+ N+ + ++P  L    ++  + L +N +   I S             S   +
Sbjct: 241 HLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNI-SAIGSNDFCPPGYNTKKASYSGV 298

Query: 712 NLSHNNLSDFI--PRCFEEMNGLLYIDISYN 740
           +L  N +  +   P  F  +     + +   
Sbjct: 299 SLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  116 bits (293), Expect = 1e-28
 Identities = 70/351 (19%), Positives = 124/351 (35%), Gaps = 57/351 (16%)

Query: 300 SLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNEL 359
            L +++  +  L   +P  L    +   L L  N ++     +  NLK+L  L L +N++
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 360 SSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLT 419
           S   P     L  L   YL KN L   +P ++   K+L  L + EN+++         L 
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLN 145

Query: 420 NLAILYLHSNTL-LGSIPREI-GNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDN 477
            + ++ L +N L    I       +K L  +++ D  ++        +LT    L L  N
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTE---LHLDGN 202

Query: 478 ALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISESFG 535
            ++ V    L  L  L  L LS N +  ++ N  L N  +L  L LN N L   +     
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260

Query: 536 IHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSA 595
            H  +  + L +N     IS+              + +     P      +    + L +
Sbjct: 261 DHKYIQVVYLHNN----NISA--------------IGSNDFCPPGYNTKKASYSGVSLFS 302

Query: 596 NHI-IGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNR 645
           N +   +I                    F  +            + L + +
Sbjct: 303 NPVQYWEIQPST----------------FRCVYV-------RAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  116 bits (293), Expect = 1e-28
 Identities = 55/273 (20%), Positives = 108/273 (39%), Gaps = 21/273 (7%)

Query: 97  TLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSM 156
            + D  F +  +L  L L  N+I  I P     + KL+ L LS N     +P        
Sbjct: 66  EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPE--KMPKT 122

Query: 157 LKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQL-SGPIPHEV-GGLSSLNELALTSN 213
           L+ L +  N+ + ++   +   L+ +  + L  N L S  I +    G+  L+ + +   
Sbjct: 123 LQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181

Query: 214 FLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIPLFLG 272
            +  +IP  L    +L  L+L  N ++  + +     L +L+ L L  N +       L 
Sbjct: 182 NIT-TIPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237

Query: 273 NLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNG------SIPLSLGNLTNLD 326
           N  +L  L+L NN     +P  + + K + ++ L  N ++         P       +  
Sbjct: 238 NTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296

Query: 327 TLYLYTNSLS-GSIPSEI-GNLKSLSGLELADN 357
            + L++N +    I       +   + ++L + 
Sbjct: 297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 97.4 bits (243), Expect = 5e-22
 Identities = 53/256 (20%), Positives = 103/256 (40%), Gaps = 40/256 (15%)

Query: 493 LTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNF 550
             +L L +N++   I +   +NL NL  L L  N ++     +F    KL  + LS N  
Sbjct: 54  TALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ- 111

Query: 551 YGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI-GKL 609
                                   +  LP ++     L  + +  N I  K+   +   L
Sbjct: 112 ------------------------LKELPEKM--PKTLQELRVHENEI-TKVRKSVFNGL 144

Query: 610 SSLIKLILRRNQL-FGQLPSE-LGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLST 667
           + +I + L  N L    + +     + +L Y+ ++   ++ +IP+ L     L  L+L  
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDG 201

Query: 668 NQFIQEIPIK-LEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCF 726
           N+ I ++    L+ L +L++L LS N +       + N   L  L+L++N L   +P   
Sbjct: 202 NK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGL 259

Query: 727 EEMNGLLYIDISYNEL 742
            +   +  + +  N +
Sbjct: 260 ADHKYIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 90.8 bits (226), Expect = 6e-20
 Identities = 48/212 (22%), Positives = 89/212 (41%), Gaps = 12/212 (5%)

Query: 535 GIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS-SQLHVIDL 593
            + P    +DL +N        D+    NL T  +  NN I  + P       +L  + L
Sbjct: 49  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILI-NNKISKISPGAFAPLVKLERLYL 107

Query: 594 SANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSI--P 651
           S N +  ++P ++    +L +L +  N++     S    L Q+  ++L +N L +S    
Sbjct: 108 SKNQL-KELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164

Query: 652 RSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQI-CNMRSLEM 710
            +   + KL Y+ ++    I  IP  L     L+EL L  N +  ++ +     + +L  
Sbjct: 165 GAFQGMKKLSYIRIADTN-ITTIPQGL--PPSLTELHLDGNKI-TKVDAASLKGLNNLAK 220

Query: 711 LNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 742
           L LS N++S            L  + ++ N+L
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.1 bits (180), Expect = 5e-14
 Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 8/159 (5%)

Query: 587 QLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRL 646
            L V+  S   +  K+P ++        L L+ N++      +  +L  L  L L +N++
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 647 SNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMR 706
           S   P +   LVKL  L LS NQ ++E+P K+     L EL +  N + K   S    + 
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQ-LKELPEKM--PKTLQELRVHENEITKVRKSVFNGLN 145

Query: 707 SLEMLNLSHNNLSDFI--PRCFEEMNGLLYIDISYNELH 743
            + ++ L  N L         F+ M  L YI I+   + 
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  124 bits (314), Expect = 2e-31
 Identities = 55/261 (21%), Positives = 103/261 (39%), Gaps = 12/261 (4%)

Query: 276 NLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSL 335
           +   +   +   +S +P+ I    S + LEL  N+L          LT L  L L +N L
Sbjct: 8   SGTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 336 S-GSIPSEI-GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-G 392
           S     S+      SL  L+L+ N + + +      L  L       ++L       +  
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 393 NLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLG 451
           +L++L  LD+S      +       L++L +L +  N+   +   +I   L++L  L L 
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 452 DNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN-- 509
             +L      +  +L+ + +L +  N    +       L  L +L  S N +  +     
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQE 242

Query: 510 LRNL-TNLIRLRLNRNHLTCN 529
           L++  ++L  L L +N   C 
Sbjct: 243 LQHFPSSLAFLNLTQNDFACT 263

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  112 bits (282), Expect = 2e-27
 Identities = 51/223 (22%), Positives = 75/223 (33%), Gaps = 10/223 (4%)

Query: 97  TLHDFSFSSFPHLAYLDLQVNQI--FGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNL 154
           +L    F     L  L L  N +   G         + LKYLDLS N    T+      L
Sbjct: 42  SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGL 100

Query: 155 SMLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTS 212
             L+ L    +         +   L  +  L +          + +  GLSSL  L +  
Sbjct: 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAG 159

Query: 213 NFLKGSIPP-SLGNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIPLF 270
           N  + +  P     L NL  L L    L   +      +L SL  L + +N         
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218

Query: 271 LGNLTNLDTLYLRNNSFSSSIPSEIGNL-KSLSILELGENRLN 312
              L +L  L    N   +S   E+ +   SL+ L L +N   
Sbjct: 219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  111 bits (279), Expect = 5e-27
 Identities = 52/238 (21%), Positives = 94/238 (39%), Gaps = 10/238 (4%)

Query: 106 FPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSN--SFSGTIPPQIGNLSMLKFLYLS 163
                 L+L+ N++  +       +++L  L LSSN  SF G         + LK+L LS
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 164 ANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPPS 222
            N     +      L  +E L    + L       V   L +L  L ++    + +    
Sbjct: 87  FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145

Query: 223 LGNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIP-LFLGNLTNLDTL 280
              L++L +L +  NS   +   +I   L++L+ L L   +L   +      +L++L  L
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVL 204

Query: 281 YLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSL--GNLTNLDTLYLYTNSLS 336
            + +N+F S        L SL +L+   N +  +          ++L  L L  N  +
Sbjct: 205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  111 bits (279), Expect = 6e-27
 Identities = 57/258 (22%), Positives = 95/258 (36%), Gaps = 13/258 (5%)

Query: 158 KFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFL-- 215
             +  ++   +  +P  I   S    L L  N+L          L+ L +L+L+SN L  
Sbjct: 10  TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 216 KGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPL-FLGNL 274
           KG    S    T+L  L L  N +  ++ S    L+ L  L   ++ L          +L
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 275 TNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSI-PLSLGNLTNLDTLYLYTN 333
            NL  L + +     +       L SL +L++  N    +  P     L NL  L L   
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185

Query: 334 SLSGSIPSEI-GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI- 391
            L   +      +L SL  L ++ N   S        L +L       N +  +   +  
Sbjct: 186 QLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQEL 243

Query: 392 -GNLKSLSNLDLSENKLS 408
                SL+ L+L++N  +
Sbjct: 244 QHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  106 bits (266), Expect = 3e-25
 Identities = 56/233 (24%), Positives = 89/233 (38%), Gaps = 29/233 (12%)

Query: 514 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN 573
           ++  RL L  N L       F    +LT + LS N                         
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS---------------------- 65

Query: 574 IIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSE--LG 631
             G        ++ L  +DLS N +I  + S    L  L  L  + + L  Q+       
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFL 123

Query: 632 SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIK-LEKLIHLSELDLS 690
           SL  L YLD+S      +       L  L  L ++ N F +        +L +L+ LDLS
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 691 HNFLGKEIPSQI-CNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 742
              L +++      ++ SL++LN+SHNN        ++ +N L  +D S N +
Sbjct: 184 QCQL-EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  105 bits (264), Expect = 5e-25
 Identities = 69/299 (23%), Positives = 97/299 (32%), Gaps = 59/299 (19%)

Query: 428 SNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALS--GVIPE 485
           ++  L S+P  I    S   L+L  NKL +        LT +T L+L  N LS  G   +
Sbjct: 15  NSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ 72

Query: 486 ELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISES-FGIHPKLTFID 544
                  L  L LS N +     N   L  L  L    ++L      S F     L ++D
Sbjct: 73  SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 132

Query: 545 LSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPS 604
           +SH +                                I                      
Sbjct: 133 ISHTH-------------------------TRVAFNGI---------------------- 145

Query: 605 EIGKLSSLIKLILRRNQLFGQLPSE-LGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYL 663
               LSSL  L +  N        +    L  L +LDLS  +L    P +  +L  L  L
Sbjct: 146 -FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204

Query: 664 NLSTNQFIQEIPIK-LEKLIHLSELDLSHNFLGKEIPSQICN--MRSLEMLNLSHNNLS 719
           N+S N     +     + L  L  LD S N +      Q       SL  LNL+ N+ +
Sbjct: 205 NMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHI-MTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  122 bits (308), Expect = 2e-30
 Identities = 65/268 (24%), Positives = 107/268 (39%), Gaps = 18/268 (6%)

Query: 275 TNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNS 334
             + +L L NN  +    S++    +L  L L  N +N     S  +L +L+ L L  N 
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 335 LSGSIPSEI-GNLKSLSGLELADNELSSSIPHYL-GNLTNLAAFYLYKNSLSGSIPSEI- 391
           LS ++ S     L SL+ L L  N   +     L  +LT L    +        I  +  
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 392 GNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQL 450
             L  L  L++  + L    P SL ++ N++ L LH       +         S+  L+L
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLEL 229

Query: 451 GDNKLSNS--------ISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQ 502
            D  L            ++SL        + + D +L   + + L  +  L  L  S NQ
Sbjct: 230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQ 288

Query: 503 LQGSIPN--LRNLTNLIRLRLNRNHLTC 528
           L+ S+P+     LT+L ++ L+ N   C
Sbjct: 289 LK-SVPDGIFDRLTSLQKIWLHTNPWDC 315

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  118 bits (297), Expect = 6e-29
 Identities = 64/324 (19%), Positives = 121/324 (37%), Gaps = 20/324 (6%)

Query: 208 LALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSI 267
             + S   + S   +  +     I    + SL+ SIPS +   +++ SL L NN++    
Sbjct: 12  GVIISLSKEESSNQASLSCDRNGICKGSSGSLN-SIPSGL--TEAVKSLDLSNNRITYIS 68

Query: 268 PLFLGNLTNLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIPLSL-GNLTNL 325
              L    NL  L L +N  ++ I  +   +L SL  L+L  N L  ++  S    L++L
Sbjct: 69  NSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSL 126

Query: 326 DTLYLYTNSLSGSIPSEI-GNLKSLSGLELADNELSSSIPHY-LGNLTNLAAFYLYKNSL 383
             L L  N       + +  +L  L  L + + +  + I       LT L    +  + L
Sbjct: 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186

Query: 384 SGSIPSEI-GNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI--- 439
             S   +   +++++S+L L   +    +   +   +++  L L    L      E+   
Sbjct: 187 Q-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245

Query: 440 -----GNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLT 494
                    +   +++ D  L   +   L  ++ +  L    N L  V       L  L 
Sbjct: 246 ETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQ 304

Query: 495 MLTLSDNQLQGSIPNLRNLTNLIR 518
            + L  N    S P +  L+  + 
Sbjct: 305 KIWLHTNPWDCSCPRIDYLSRWLN 328

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  112 bits (283), Expect = 4e-27
 Identities = 63/285 (22%), Positives = 112/285 (39%), Gaps = 22/285 (7%)

Query: 137 DLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQLSGPI 195
             SS S + +IP  +     +K L LS N+ +  I          ++AL L  N ++  I
Sbjct: 37  KGSSGSLN-SIPSGL--TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINT-I 91

Query: 196 PHEV-GGLSSLNELALTSNFLKGSIPPSL-GNLTNLAILYLHNNSLSGSIPSEI-GNLKS 252
             +    L SL  L L+ N+L  ++  S    L++L  L L  N       + +  +L  
Sbjct: 92  EEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK 150

Query: 253 LSSLALGNNKLCGSIPL-FLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRL 311
           L  L +GN      I       LT L+ L +  +   S  P  + +++++S L L   + 
Sbjct: 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210

Query: 312 NGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI--------GNLKSLSGLELADNELSSSI 363
              + + +   ++++ L L    L     SE+            +   +++ D  L   +
Sbjct: 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL-FQV 269

Query: 364 PHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSENKL 407
              L  ++ L      +N L  S+P  I   L SL  + L  N  
Sbjct: 270 MKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  112 bits (282), Expect = 5e-27
 Identities = 58/266 (21%), Positives = 102/266 (38%), Gaps = 19/266 (7%)

Query: 106 FPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSA 164
              +  LDL  N+I  I    +     L+ L L+SN  + TI      +L  L+ L LS 
Sbjct: 51  TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSY 109

Query: 165 NQFSGRIPPQI-GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPP- 221
           N  S  +       LS +  L+L  N         +   L+ L  L + +      I   
Sbjct: 110 NYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168

Query: 222 SLGNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTL 280
               LT L  L +  + L  S   +   +++++S L L   +    + +F+   ++++ L
Sbjct: 169 DFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227

Query: 281 YLRNNSFSSSIPSEI--------GNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYT 332
            LR+    +   SE+            +   +++ +  L   +   L  ++ L  L    
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSR 286

Query: 333 NSLSGSIPSEI-GNLKSLSGLELADN 357
           N L  S+P  I   L SL  + L  N
Sbjct: 287 NQLK-SVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  106 bits (267), Expect = 4e-25
 Identities = 51/287 (17%), Positives = 96/287 (33%), Gaps = 40/287 (13%)

Query: 467 THMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRN 524
             +  L L +N ++ +   +L   V L  L L+ N +  +I      +L +L  L L+ N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 525 HLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEI-- 582
           +L+   S  F     LTF++L  N                            +L      
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNP-------------------------YKTLGETSLF 145

Query: 583 GDSSQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDL 641
              ++L ++ +       KI  +    L+ L +L +  + L    P  L S+  + +L L
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205

Query: 642 SSNRLSNSIPRSLGNLVKLHYLNLSTNQF----IQEIPI----KLEKLIHLSELDLSHNF 693
              +    +   +     +  L L           E+       L K      + ++   
Sbjct: 206 HMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265

Query: 694 LGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYN 740
           L  ++   +  +  L  L  S N L       F+ +  L  I +  N
Sbjct: 266 L-FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 99.8 bits (249), Expect = 9e-23
 Identities = 59/281 (20%), Positives = 96/281 (34%), Gaps = 19/281 (6%)

Query: 401 DLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSIS 460
             S   L+ SIP  L     +  L L +N +      ++    +L  L L  N ++    
Sbjct: 37  KGSSGSLN-SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE 93

Query: 461 HSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIR 518
            S  +L  +  L L  N LS +       L  LT L L  N  +         +LT L  
Sbjct: 94  DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153

Query: 519 LRLNRNHLTCNISE-SFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGS 577
           LR+        I    F     L  +++  ++             N+    + +   I  
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-L 212

Query: 578 LPPEIGDS-SQLHVIDLSANHIIGKIPSEI--------GKLSSLIKLILRRNQLFGQLPS 628
           L     D  S +  ++L    +     SE+         K  +   + +    LF Q+  
Sbjct: 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMK 271

Query: 629 ELGSLIQLEYLDLSSNRLSNSIPRS-LGNLVKLHYLNLSTN 668
            L  +  L  L+ S N+L  S+P      L  L  + L TN
Sbjct: 272 LLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 78.6 bits (194), Expect = 1e-15
 Identities = 39/183 (21%), Positives = 67/183 (36%), Gaps = 7/183 (3%)

Query: 572 NNIIGSLPPEIGDS-SQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSE 629
           NN I  +          L  + L++N I   I  +    L SL  L L  N L   L S 
Sbjct: 61  NNRITYISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYNYL-SNLSSS 118

Query: 630 L-GSLIQLEYLDLSSNRLSNSIPRSL-GNLVKLHYLNLSTNQFIQEIPIK-LEKLIHLSE 686
               L  L +L+L  N        SL  +L KL  L +       +I  K    L  L E
Sbjct: 119 WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178

Query: 687 LDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPI 746
           L++  + L    P  + +++++  L L        +    +  + +  +++   +L    
Sbjct: 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH 238

Query: 747 PNS 749
            + 
Sbjct: 239 FSE 241

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.1 bits (172), Expect = 6e-13
 Identities = 34/203 (16%), Positives = 64/203 (31%), Gaps = 25/203 (12%)

Query: 63  NNATKISPCAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGI 122
           N    +   + F    +H+ ++  + + N+     +    F+    L  L++  + +   
Sbjct: 134 NPYKTLGETSLF----SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189

Query: 123 IPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGRIPPQIGHLSYI 181
            P  + +I  + +L L        +        S ++ L L               LS  
Sbjct: 190 EPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDT---FHFSELSTG 245

Query: 182 EALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSG 241
           E   L K               +   + +T   L   +   L  ++ L  L    N L  
Sbjct: 246 ETNSLIK-------------KFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK- 290

Query: 242 SIPSEI-GNLKSLSSLALGNNKL 263
           S+P  I   L SL  + L  N  
Sbjct: 291 SVPDGIFDRLTSLQKIWLHTNPW 313

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  120 bits (304), Expect = 4e-30
 Identities = 66/310 (21%), Positives = 112/310 (36%), Gaps = 25/310 (8%)

Query: 157 LKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLK 216
           L+ +  S       +P +I        L L  N +S     +  GL  L  L L +N + 
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 217 GSIPP-SLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLT 275
             I   +   L  L  LY+  N L   IP  +    SL  L + +N++          L 
Sbjct: 92  -KIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 276 NLDTLYLRNNSF-SSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNS 334
           N++ + +  N   +S       +   L+ L + E +L   IP  L     L+ L+L  N 
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNK 204

Query: 335 LSGSIPSEI-GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGN 393
           +  +I  E       L  L L  N++       L  L  L   +L  N LS  +P+ + +
Sbjct: 205 IQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262

Query: 394 LKSLSNLDLSENKLSGSIP-------HSLGNLTNLAILYLHSNTL-LGSIPREI-GNLKS 444
           LK L  + L  N ++  +                   + L +N +    +       +  
Sbjct: 263 LKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTD 321

Query: 445 LFELQLGDNK 454
              +Q G+ K
Sbjct: 322 RLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  118 bits (299), Expect = 2e-29
 Identities = 69/330 (20%), Positives = 123/330 (37%), Gaps = 42/330 (12%)

Query: 420 NLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNAL 479
           +L ++      L  ++P+EI        L L +N +S         L H+  L L +N +
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 480 SGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPK 539
           S +  +    L KL  L +S N L    PNL   ++L+ LR++ N +       F     
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRN 148

Query: 540 LTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHII 599
           +  I++  N     + +                       P   D  +L+ + +S   + 
Sbjct: 149 MNCIEMGGN----PLENSG-------------------FEPGAFDGLKLNYLRISEAKLT 185

Query: 600 GKIPSEIGKLSSLIKLILRRNQLFGQLPSE-LGSLIQLEYLDLSSNRLSNSIPRSLGNLV 658
             IP ++    +L +L L  N++   +  E L    +L  L L  N++      SL  L 
Sbjct: 186 -GIPKDL--PETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP 241

Query: 659 KLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMR------SLEMLN 712
            L  L+L  N+ +  +P  L  L  L  + L  N + K   +  C +           ++
Sbjct: 242 TLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300

Query: 713 LSHNNLSDFI--PRCFEEMNGLLYIDISYN 740
           L +N +  +   P  F  +   L I     
Sbjct: 301 LFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  114 bits (287), Expect = 9e-28
 Identities = 69/289 (23%), Positives = 115/289 (39%), Gaps = 24/289 (8%)

Query: 106 FPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSA 164
            P    LDLQ N I  +       +  L  L L +N  S  I  +    L  L+ LY+S 
Sbjct: 53  SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISK 111

Query: 165 NQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLK-GSIPPS 222
           N     IPP     S +  L +  N++   +P  V  GL ++N + +  N L+     P 
Sbjct: 112 NHLV-EIPP--NLPSSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPG 167

Query: 223 LGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLF-LGNLTNLDTLY 281
             +   L  L +    L+  IP      ++L+ L L +NK+  +I L  L   + L  L 
Sbjct: 168 AFDGLKLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKI-QAIELEDLLRYSKLYRLG 223

Query: 282 LRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPS 341
           L +N         +  L +L  L L  N+L+  +P  L +L  L  +YL+TN+++  +  
Sbjct: 224 LGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGV 281

Query: 342 EI-------GNLKSLSGLELADNELS-SSIPHYL-GNLTNLAAFYLYKN 381
                          +G+ L +N +    +       +T+  A      
Sbjct: 282 NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  112 bits (281), Expect = 6e-27
 Identities = 60/284 (21%), Positives = 110/284 (38%), Gaps = 22/284 (7%)

Query: 276 NLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSL 335
           +L  +   +    + +P EI      ++L+L  N ++         L +L  L L  N +
Sbjct: 34  HLRVVQCSDLGLKA-VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 336 SGSIPSEI-GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GN 393
           S  I  +    L+ L  L ++ N L    P+   +L  L    ++ N +   +P  +   
Sbjct: 91  S-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVEL---RIHDNRIR-KVPKGVFSG 145

Query: 394 LKSLSNLDLSENKL-SGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGD 452
           L++++ +++  N L +        +   L  L +     L  IP+     ++L EL L  
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA-KLTGIPK--DLPETLNELHLDH 202

Query: 453 NKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-NLR 511
           NK+       L   + +  L L  N +  +    L  L  L  L L +N+L   +P  L 
Sbjct: 203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261

Query: 512 NLTNLIRLRLNRNHLTCNISESF------GIHPKLTFIDLSHNN 549
           +L  L  + L+ N++T      F              I L +N 
Sbjct: 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  108 bits (273), Expect = 6e-26
 Identities = 59/273 (21%), Positives = 100/273 (36%), Gaps = 22/273 (8%)

Query: 97  TLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSM 156
            L    F    HL  L L  N+I  I       + KL+ L +S N     IPP +   S 
Sbjct: 68  ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSS 124

Query: 157 LKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQL-SGPIPHEVGGLSSLNELALTSNF 214
           L  L +  N+   ++P  +   L  +  + +  N L +            LN L ++   
Sbjct: 125 LVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK 183

Query: 215 LKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIPLFLGN 273
           L   IP  L     L  L+L +N +  +I  E       L  L LG+N++       L  
Sbjct: 184 LT-GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239

Query: 274 LTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIP-------LSLGNLTNLD 326
           L  L  L+L NN   S +P+ + +LK L ++ L  N +   +                 +
Sbjct: 240 LPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYN 297

Query: 327 TLYLYTNSLS-GSIPSEI-GNLKSLSGLELADN 357
            + L+ N +    +       +     ++  + 
Sbjct: 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  107 bits (269), Expect = 2e-25
 Identities = 63/349 (18%), Positives = 109/349 (31%), Gaps = 54/349 (15%)

Query: 300 SLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNEL 359
            L +++  +  L  ++P  +    +   L L  N +S     +   L+ L  L L +N++
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 360 SSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLT 419
           S         L  L   Y+ KN L   IP  +    SL  L + +N++          L 
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 420 NLAILYLHSNTL-LGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNA 478
           N+  + +  N L          +   L  L++ + KL+         L     L L  N 
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNE---LHLDHNK 204

Query: 479 LSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISESFGI 536
           +  +  E+L    KL  L L  NQ++  I N  L  L  L  L L+ N L+  +      
Sbjct: 205 IQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262

Query: 537 HPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSAN 596
              L  + L  NN                     V              +  + I L  N
Sbjct: 263 LKLLQVVYLHTNNI------------------TKVGVNDFCPVGFGVKRAYYNGISLFNN 304

Query: 597 HIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNR 645
            +                        +   P+    +     +   + +
Sbjct: 305 PV----------------------PYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 95.9 bits (239), Expect = 1e-21
 Identities = 56/256 (21%), Positives = 105/256 (41%), Gaps = 41/256 (16%)

Query: 493 LTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNF 550
            T+L L +N +   +     + L +L  L L  N ++    ++F    KL  + +S N+ 
Sbjct: 56  TTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH- 113

Query: 551 YGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI-GKL 609
                                   +  +PP +   S L  + +  N I  K+P  +   L
Sbjct: 114 ------------------------LVEIPPNL--PSSLVELRIHDNRIR-KVPKGVFSGL 146

Query: 610 SSLIKLILRRNQL-FGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTN 668
            ++  + +  N L            ++L YL +S  +L+  IP+ L     L+ L+L  N
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHN 203

Query: 669 QFIQEIPIK-LEKLIHLSELDLSHNFLGKEIPSQIC-NMRSLEMLNLSHNNLSDFIPRCF 726
           + IQ I ++ L +   L  L L HN + + I +     + +L  L+L +N LS  +P   
Sbjct: 204 K-IQAIELEDLLRYSKLYRLGLGHNQI-RMIENGSLSFLPTLRELHLDNNKLSR-VPAGL 260

Query: 727 EEMNGLLYIDISYNEL 742
            ++  L  + +  N +
Sbjct: 261 PDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 87.0 bits (216), Expect = 1e-18
 Identities = 52/254 (20%), Positives = 98/254 (38%), Gaps = 39/254 (15%)

Query: 493 LTMLTLSDNQLQGSIPNLRNL-TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFY 551
           L ++  SD  L+ ++P  + +  +   L L  N ++    + F     L  + L +N   
Sbjct: 35  LRVVQCSDLGLK-AVP--KEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-- 89

Query: 552 GQISSDWGKCPNLGTFDVSVNNIIGSLPPEI-GDSSQLHVIDLSANHIIGKIPSEIGKLS 610
                                  I  +  +      +L  + +S NH++ +IP  +   S
Sbjct: 90  -----------------------ISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PS 123

Query: 611 SLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNS-IPRSLGNLVKLHYLNLSTNQ 669
           SL++L +  N++          L  +  +++  N L NS       + +KL+YL +S  +
Sbjct: 124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK 183

Query: 670 FIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQI-CNMRSLEMLNLSHNNLSDFIPRCFEE 728
            +  IP  L     L+EL L HN + + I  +       L  L L HN +          
Sbjct: 184 -LTGIPKDL--PETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239

Query: 729 MNGLLYIDISYNEL 742
           +  L  + +  N+L
Sbjct: 240 LPTLRELHLDNNKL 253

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 68.1 bits (167), Expect = 3e-12
 Identities = 40/158 (25%), Positives = 65/158 (41%), Gaps = 9/158 (5%)

Query: 587 QLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRL 646
            L V+  S   +   +P EI        L L+ N +      +   L  L  L L +N++
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 647 SNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMR 706
           S    ++   L KL  L +S N  + EIP  L     L EL +  N + K        +R
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNH-LVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 707 SLEMLNLSHNNLSDFI--PRCFEEMNGLLYIDISYNEL 742
           ++  + +  N L +    P  F+ +  L Y+ IS  +L
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKL 184

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  114 bits (288), Expect = 3e-28
 Identities = 55/221 (24%), Positives = 89/221 (40%), Gaps = 10/221 (4%)

Query: 314 SIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNL 373
           ++P+ +        ++L+ N +S    +     ++L+ L L  N L+         L  L
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 374 AAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSENKLSGSIPH-SLGNLTNLAILYLHSNTL 431
               L  N+   S+       L  L  L L    L   +       L  L  LYL  N  
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDN-A 140

Query: 432 LGSIPREI-GNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNL 490
           L ++P +   +L +L  L L  N++S+    +   L  +  L L+ N ++ V P    +L
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 491 VKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCN 529
            +L  L L  N L  ++P   L  L  L  LRLN N   C+
Sbjct: 201 GRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCD 240

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  111 bits (280), Expect = 2e-27
 Identities = 54/218 (24%), Positives = 89/218 (40%), Gaps = 10/218 (4%)

Query: 338 SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKS 396
           ++P  I    +   + L  N +S           NL   +L+ N L+  I +     L  
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLAL 81

Query: 397 LSNLDLSENKLSGSIP-HSLGNLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDNK 454
           L  LDLS+N    S+   +   L  L  L+L     L  +   +   L +L  L L DN 
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNA 140

Query: 455 LSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRN 512
           L      +  +L ++T L L+ N +S V       L  L  L L  N++   +     R+
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRD 199

Query: 513 LTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNF 550
           L  L+ L L  N+L+   +E+      L ++ L+ N +
Sbjct: 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  111 bits (279), Expect = 3e-27
 Identities = 62/231 (26%), Positives = 99/231 (42%), Gaps = 12/231 (5%)

Query: 279 TLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGS 338
           T         + +P  I    +   + L  NR++     S     NL  L+L++N L+  
Sbjct: 15  TTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-R 70

Query: 339 IPSEI-GNLKSLSGLELADNELSSSIP-HYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLK 395
           I +     L  L  L+L+DN    S+       L  L   +L +  L   +   +   L 
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLA 129

Query: 396 SLSNLDLSENKLSGSIP-HSLGNLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDN 453
           +L  L L +N L  ++P  +  +L NL  L+LH N  + S+P      L SL  L L  N
Sbjct: 130 ALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQN 187

Query: 454 KLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ 504
           ++++   H+  +L  +  L L+ N LS +  E L  L  L  L L+DN   
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  107 bits (268), Expect = 1e-25
 Identities = 61/210 (29%), Positives = 93/210 (44%), Gaps = 11/210 (5%)

Query: 106 FPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSA 164
                 + L  N+I  +          L  L L SN  +  I       L++L+ L LS 
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD 89

Query: 165 NQFSGRIPPQI-GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPP- 221
           N     + P     L  +  LHL +  L   +   +  GL++L  L L  N L+ ++P  
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQ-ALPDD 147

Query: 222 SLGNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTL 280
           +  +L NL  L+LH N +S S+P      L SL  L L  N++    P    +L  L TL
Sbjct: 148 TFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 281 YLRNNSFSSSIPSEI-GNLKSLSILELGEN 309
           YL  N+  S++P+E    L++L  L L +N
Sbjct: 207 YLFANNL-SALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  103 bits (259), Expect = 2e-24
 Identities = 57/220 (25%), Positives = 89/220 (40%), Gaps = 13/220 (5%)

Query: 170 RIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPP-SLGNLTN 228
            +P  I   +  + + L  N++S           +L  L L SN L   I   +   L  
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLAL 81

Query: 229 LAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIP--LFLGNLTNLDTLYLRNN 285
           L  L L +N+   S+       L  L +L L    L   +   LF G L  L  LYL++N
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRG-LAALQYLYLQDN 139

Query: 286 SFSSSIPSEI-GNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI- 343
           +   ++P +   +L +L+ L L  NR++     +   L +LD L L+ N ++  +     
Sbjct: 140 AL-QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAF 197

Query: 344 GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSL 383
            +L  L  L L  N LS+     L  L  L    L  N  
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  101 bits (255), Expect = 6e-24
 Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 11/197 (5%)

Query: 97  TLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLS 155
            +   SF +  +L  L L  N +  I       ++ L+ LDLS N+   ++ P     L 
Sbjct: 46  HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105

Query: 156 MLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSN 213
            L  L+L        + P +   L+ ++ L+L  N L   +P +    L +L  L L  N
Sbjct: 106 RLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGN 163

Query: 214 FLKGSIPP-SLGNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIPL-F 270
            +  S+P  +   L +L  L LH N ++  +      +L  L +L L  N L  ++P   
Sbjct: 164 RIS-SVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNL-SALPTEA 220

Query: 271 LGNLTNLDTLYLRNNSF 287
           L  L  L  L L +N +
Sbjct: 221 LAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 98.9 bits (247), Expect = 5e-23
 Identities = 52/211 (24%), Positives = 87/211 (41%), Gaps = 11/211 (5%)

Query: 514 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDW-GKCPNLGTFDVSVN 572
               R+ L+ N ++   + SF     LT + L  N    +I +        L   D+S N
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDN 90

Query: 573 NIIGSLPPEI-GDSSQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSE- 629
             + S+ P       +LH + L    +  ++   +   L++L  L L+ N L   LP + 
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNAL-QALPDDT 148

Query: 630 LGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIK-LEKLIHLSELD 688
              L  L +L L  NR+S+   R+   L  L  L L  N+ +  +       L  L  L 
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLY 207

Query: 689 LSHNFLGKEIPSQI-CNMRSLEMLNLSHNNL 718
           L  N L   +P++    +R+L+ L L+ N  
Sbjct: 208 LFANNL-SALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 89.7 bits (223), Expect = 9e-20
 Identities = 42/176 (23%), Positives = 69/176 (39%), Gaps = 8/176 (4%)

Query: 572 NNIIGSLPPEI-GDSSQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSE 629
            N I  +P         L ++ L +N +  +I +     L+ L +L L  N     +   
Sbjct: 41  GNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQLRSVDPA 99

Query: 630 -LGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIK-LEKLIHLSEL 687
               L +L  L L    L    P     L  L YL L  N  +Q +P      L +L+ L
Sbjct: 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHL 158

Query: 688 DLSHNFLGKEIPSQI-CNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 742
            L  N +   +P +    + SL+ L L  N ++   P  F ++  L+ + +  N L
Sbjct: 159 FLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 5/144 (3%)

Query: 602 IPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLH 661
           +P  I   ++  ++ L  N++     +   +   L  L L SN L+     +   L  L 
Sbjct: 26  VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 662 YLNLSTNQFIQEIPIK-LEKLIHLSELDLSHNFLGKEIPSQI-CNMRSLEMLNLSHNNLS 719
            L+LS N  ++ +       L  L  L L    L +E+   +   + +L+ L L  N L 
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQ 142

Query: 720 DFIPRCFEEMNGLLYIDISYNELH 743
                 F ++  L ++ +  N + 
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRIS 166

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 43/170 (25%), Positives = 66/170 (38%), Gaps = 7/170 (4%)

Query: 577 SLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQL 636
           ++P  I   +    I L  N I     +      +L  L L  N L     +    L  L
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 637 EYLDLSSNRLSNSIP-RSLGNLVKLHYLNLSTNQFIQEIPIK-LEKLIHLSELDLSHNFL 694
           E LDLS N    S+   +   L +LH L+L     +QE+       L  L  L L  N L
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNAL 141

Query: 695 GKEIPSQI-CNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 743
            + +P     ++ +L  L L  N +S    R F  ++ L  + +  N + 
Sbjct: 142 -QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  117 bits (296), Expect = 3e-28
 Identities = 61/241 (25%), Positives = 96/241 (39%), Gaps = 13/241 (5%)

Query: 218 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLF-LGNLTN 276
            +P  +   TN  +L LH N +     +   +L+ L  L L  N +  +I +     L N
Sbjct: 57  EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLAN 113

Query: 277 LDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSL 335
           L+TL L +N  ++ IP+     L  L  L L  N +      +   + +L  L L     
Sbjct: 114 LNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR 172

Query: 336 SGSIPSEI-GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GN 393
              I       L +L  L LA   L   IP+ L  L  L    L  N LS +I       
Sbjct: 173 LSYISEGAFEGLSNLRYLNLAMCNLRE-IPN-LTPLIKLDELDLSGNHLS-AIRPGSFQG 229

Query: 394 LKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGD 452
           L  L  L + ++++     ++  NL +L  + L  N  L  +P ++   L  L  + L  
Sbjct: 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHH 288

Query: 453 N 453
           N
Sbjct: 289 N 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  114 bits (287), Expect = 4e-27
 Identities = 72/278 (25%), Positives = 116/278 (41%), Gaps = 38/278 (13%)

Query: 157 LKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLK 216
              +          +P  I   +    L+L +NQ+     +    L  L  L L+ N ++
Sbjct: 45  FSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR 101

Query: 217 GSIPP-SLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLT 275
            +I   +   L NL  L L +N L+ +IP+                            L+
Sbjct: 102 -TIEIGAFNGLANLNTLELFDNRLT-TIPNGA-----------------------FVYLS 136

Query: 276 NLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIPL-SLGNLTNLDTLYLYTN 333
            L  L+LRNN    SIPS     + SL  L+LGE +    I   +   L+NL  L L   
Sbjct: 137 KLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195

Query: 334 SLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSE-IG 392
           +L   IP+ +  L  L  L+L+ N LS+  P     L +L   ++ ++ +   I      
Sbjct: 196 NLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFD 252

Query: 393 NLKSLSNLDLSENKLSGSIPHS-LGNLTNLAILYLHSN 429
           NL+SL  ++L+ N L+  +PH     L +L  ++LH N
Sbjct: 253 NLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  112 bits (283), Expect = 1e-26
 Identities = 70/257 (27%), Positives = 106/257 (41%), Gaps = 12/257 (4%)

Query: 131 SKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQ 190
           ++   +     +    +P  I   +  + L L  NQ          HL ++E L L +N 
Sbjct: 43  NQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 191 LSGPIPHEVGGLSSLNELALTSNFLKGSIPP-SLGNLTNLAILYLHNNSLSGSIPSEI-G 248
           +         GL++LN L L  N L  +IP  +   L+ L  L+L NN +  SIPS    
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFN 157

Query: 249 NLKSLSSLALGNNKLCGSIPL-FLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELG 307
            + SL  L LG  K    I       L+NL  L L   +    IP+ +  L  L  L+L 
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPN-LTPLIKLDELDLS 215

Query: 308 ENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSE-IGNLKSLSGLELADNELSSSIPHY 366
            N L+   P S   L +L  L++  + +   I      NL+SL  + LA N L+      
Sbjct: 216 GNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDL 274

Query: 367 LGNLTNLAAFYLYKNSL 383
              L +L   +L+ N  
Sbjct: 275 FTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  110 bits (277), Expect = 7e-26
 Identities = 61/234 (26%), Positives = 91/234 (38%), Gaps = 9/234 (3%)

Query: 106 FPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSA 164
             +   L+L  NQI  I      ++  L+ L LS N    TI       L+ L  L L  
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFD 121

Query: 165 NQFSGRIPPQI-GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPP- 221
           N+ +  IP     +LS ++ L L  N +   IP      + SL  L L        I   
Sbjct: 122 NRLT-TIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEG 179

Query: 222 SLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLY 281
           +   L+NL  L L   +L   IP+ +  L  L  L L  N L    P     L +L  L+
Sbjct: 180 AFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237

Query: 282 LRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSL 335
           +  +       +   NL+SL  + L  N L          L +L+ ++L+ N  
Sbjct: 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  109 bits (273), Expect = 2e-25
 Identities = 61/277 (22%), Positives = 103/277 (37%), Gaps = 35/277 (12%)

Query: 396 SLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKL 455
             S +      L   +P  +   TN  +L LH N +         +L+ L  LQL  N +
Sbjct: 44  QFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 456 SNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNL 513
                 +   L ++  L L+DN L+ +       L KL  L L +N ++ SIP+     +
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRI 159

Query: 514 TNLIRLRLNR-NHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVN 572
            +L RL L     L+     +F     L +++L+  N                       
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL---------------------- 197

Query: 573 NIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSELG 631
                  P +    +L  +DLS NH +  I       L  L KL + ++Q+     +   
Sbjct: 198 ----REIPNLTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD 252

Query: 632 SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTN 668
           +L  L  ++L+ N L+         L  L  ++L  N
Sbjct: 253 NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  109 bits (273), Expect = 3e-25
 Identities = 59/218 (27%), Positives = 82/218 (37%), Gaps = 11/218 (5%)

Query: 97  TLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLS 155
            +   SF    HL  L L  N I  I       ++ L  L+L  N  + TIP      LS
Sbjct: 78  IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLS 136

Query: 156 MLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFK-NQLSGPIPHEV-GGLSSLNELALTS 212
            LK L+L  N     IP      +  +  L L +  +LS  I      GLS+L  L L  
Sbjct: 137 KLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSY-ISEGAFEGLSNLRYLNLAM 194

Query: 213 NFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIPLFL 271
             L     P+L  L  L  L L  N LS +I       L  L  L +  +++        
Sbjct: 195 CNL--REIPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAF 251

Query: 272 GNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGEN 309
            NL +L  + L +N+ +         L  L  + L  N
Sbjct: 252 DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 72.9 bits (179), Expect = 1e-13
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 7/146 (4%)

Query: 97  TLHDFSFSSFPHLAYLDLQ-VNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLS 155
           ++  ++F+  P L  LDL  + ++  I       +S L+YL+L+  +      P +  L 
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL--REIPNLTPLI 207

Query: 156 MLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNF 214
            L  L LS N  S  I P     L +++ L + ++Q+     +    L SL E+ L  N 
Sbjct: 208 KLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266

Query: 215 LKGSIPPS-LGNLTNLAILYLHNNSL 239
           L   +P      L +L  ++LH+N  
Sbjct: 267 LT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  117 bits (294), Expect = 7e-28
 Identities = 61/256 (23%), Positives = 97/256 (37%), Gaps = 14/256 (5%)

Query: 203 SSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNK 262
           +  +++  T   L   +P  +   +N   L L  N++         +L  L  L LG N 
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 263 LCGSIPLF-LGNLTNLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIPLSLG 320
           +   I +     L +L+TL L +N  +  IPS     L  L  L L  N +      +  
Sbjct: 111 I-RQIEVGAFNGLASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPIESIPSYAFN 168

Query: 321 NLTNLDTLYLYTNSLSGSIPSEI-GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLY 379
            + +L  L L        I       L +L  L L    +   +P+ L  L  L    + 
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LTPLVGLEELEMS 226

Query: 380 KNSLSGSIPSE-IGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPRE 438
            N     I       L SL  L +  +++S    ++   L +L  L L  N  L S+P +
Sbjct: 227 GNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHD 284

Query: 439 I-GNLKSLFELQLGDN 453
           +   L+ L EL L  N
Sbjct: 285 LFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  115 bits (291), Expect = 2e-27
 Identities = 73/280 (26%), Positives = 109/280 (38%), Gaps = 38/280 (13%)

Query: 155 SMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNF 214
           +    +  +    S  +P  I   S    L+L +N +          L  L  L L  N 
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 215 LKGSIPP-SLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGN 273
           ++  I   +   L +L  L L +N L+  IPS                            
Sbjct: 111 IR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGA-----------------------FEY 145

Query: 274 LTNLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIPL-SLGNLTNLDTLYLY 331
           L+ L  L+LRNN    SIPS     + SL  L+LGE +    I   +   L NL  L L 
Sbjct: 146 LSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204

Query: 332 TNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSE- 390
             ++   +P+ +  L  L  LE++ N      P     L++L   ++  + +S  I    
Sbjct: 205 MCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNA 261

Query: 391 IGNLKSLSNLDLSENKLSGSIPHS-LGNLTNLAILYLHSN 429
              L SL  L+L+ N LS S+PH     L  L  L+LH N
Sbjct: 262 FDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  115 bits (290), Expect = 2e-27
 Identities = 73/257 (28%), Positives = 104/257 (40%), Gaps = 12/257 (4%)

Query: 131 SKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQ 190
           ++   +  +    S  +P  I   S  ++L L  N           HL ++E L L +N 
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 191 LSGPIPHEVGGLSSLNELALTSNFLKGSIPP-SLGNLTNLAILYLHNNSLSGSIPSEI-G 248
           +         GL+SLN L L  N+L   IP  +   L+ L  L+L NN +  SIPS    
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFN 168

Query: 249 NLKSLSSLALGNNKLCGSIPLF-LGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELG 307
            + SL  L LG  K    I       L NL  L L   +    +P+ +  L  L  LE+ 
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LTPLVGLEELEMS 226

Query: 308 ENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSE-IGNLKSLSGLELADNELSSSIPHY 366
            N      P S   L++L  L++  + +S  I       L SL  L LA N LSS     
Sbjct: 227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDL 285

Query: 367 LGNLTNLAAFYLYKNSL 383
              L  L   +L+ N  
Sbjct: 286 FTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  112 bits (282), Expect = 2e-26
 Identities = 65/257 (25%), Positives = 97/257 (37%), Gaps = 35/257 (13%)

Query: 106 FPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSA 164
             +  YL+L  N I  I      ++  L+ L L  NS    I       L+ L  L L  
Sbjct: 74  PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFD 132

Query: 165 NQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPP-SL 223
           N            L+ I +   F+             LS L EL L +N ++ SIP  + 
Sbjct: 133 NW-----------LTVIPS-GAFE------------YLSKLRELWLRNNPIE-SIPSYAF 167

Query: 224 GNLTNLAILYL-HNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLY 281
             + +L  L L     L   I       L +L  L LG   +   +P     L  L+ L 
Sbjct: 168 NRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNI-KDMPNLT-PLVGLEELE 224

Query: 282 LRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPS 341
           +  N F    P     L SL  L +  ++++     +   L +L  L L  N+LS S+P 
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPH 283

Query: 342 EI-GNLKSLSGLELADN 357
           ++   L+ L  L L  N
Sbjct: 284 DLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  110 bits (278), Expect = 6e-26
 Identities = 64/279 (22%), Positives = 102/279 (36%), Gaps = 35/279 (12%)

Query: 396 SLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKL 455
             S +  +   LS  +P  +   +N   L L  N +         +L  L  LQLG N +
Sbjct: 55  QFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 456 SNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNL 513
                 +   L  +  L L+DN L+ +       L KL  L L +N ++ SIP+     +
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRV 170

Query: 514 TNLIRLRLNR-NHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVN 572
            +L+RL L     L      +F     L +++L   N                       
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI---------------------- 208

Query: 573 NIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSE-IGKLSSLIKLILRRNQLFGQLPSELG 631
                  P +     L  +++S NH   +I       LSSL KL +  +Q+     +   
Sbjct: 209 ----KDMPNLTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD 263

Query: 632 SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQF 670
            L  L  L+L+ N LS+        L  L  L+L  N +
Sbjct: 264 GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  109 bits (273), Expect = 3e-25
 Identities = 55/219 (25%), Positives = 79/219 (36%), Gaps = 13/219 (5%)

Query: 97  TLHDFSFSSFPHLAYLDLQVNQIFGIIPPQI-GNISKLKYLDLSSNSFSGTIPPQI-GNL 154
            +   +F    HL  L L  N I   I       ++ L  L+L  N  +  IP      L
Sbjct: 89  MIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYL 146

Query: 155 SMLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFK-NQLSGPIPHEV-GGLSSLNELALT 211
           S L+ L+L  N     IP      +  +  L L +  +L   I      GL +L  L L 
Sbjct: 147 SKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEY-ISEGAFEGLFNLKYLNLG 204

Query: 212 SNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSE-IGNLKSLSSLALGNNKLCGSIPLF 270
              +     P+L  L  L  L +  N     I       L SL  L + N+++       
Sbjct: 205 MCNI--KDMPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNA 261

Query: 271 LGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGEN 309
              L +L  L L +N+ SS        L+ L  L L  N
Sbjct: 262 FDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 94.4 bits (235), Expect = 2e-20
 Identities = 50/196 (25%), Positives = 81/196 (41%), Gaps = 11/196 (5%)

Query: 97  TLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLS 155
            +   +F+    L  L+L  N +  I       +SKL+ L L +N    +IP      + 
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVP 171

Query: 156 MLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNF 214
            L  L L   +    I       L  ++ L+L    +   +P+ +  L  L EL ++ N 
Sbjct: 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LTPLVGLEELEMSGNH 229

Query: 215 LKGSIPP-SLGNLTNLAILYLHNNSLSGSIPSE-IGNLKSLSSLALGNNKLCGSIPL-FL 271
               I P S   L++L  L++ N+ +S  I       L SL  L L +N L  S+P    
Sbjct: 230 FP-EIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNL-SSLPHDLF 286

Query: 272 GNLTNLDTLYLRNNSF 287
             L  L  L+L +N +
Sbjct: 287 TPLRYLVELHLHHNPW 302

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  113 bits (285), Expect = 9e-28
 Identities = 60/281 (21%), Positives = 118/281 (41%), Gaps = 20/281 (7%)

Query: 223 LGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYL 282
              L N   +    ++++        +L  +++L+     +  +I   +  L NL  L L
Sbjct: 15  DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGV-TTIE-GVQYLNNLIGLEL 70

Query: 283 RNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSE 342
           ++N  +    + + NL  ++ LEL  N L     ++   L ++ TL L +  ++   P  
Sbjct: 71  KDNQITD--LAPLKNLTKITELELSGNPLKNVSAIA--GLQSIKTLDLTSTQITDVTP-- 124

Query: 343 IGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDL 402
           +  L +L  L L  N++++  P  L  LTNL    +    +S    + + NL  L+ L  
Sbjct: 125 LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKA 180

Query: 403 SENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHS 462
            +NK+S  I   L +L NL  ++L +N +    P  + N  +LF + L +  ++N     
Sbjct: 181 DDNKIS-DIS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFY 236

Query: 463 LGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQL 503
             NL       +   + + + P  + +        L+ N  
Sbjct: 237 NNNLV--VPNVVKGPSGAPIAPATISDNGTYASPNLTWNLT 275

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  108 bits (271), Expect = 6e-26
 Identities = 60/273 (21%), Positives = 111/273 (40%), Gaps = 20/273 (7%)

Query: 178 LSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNN 237
           L+    +   K+ ++  +      L  +  L+     +  +I   +  L NL  L L +N
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDN 73

Query: 238 SLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGN 297
            ++    + + NL  ++ L L  N L       +  L ++ TL L +   +   P  +  
Sbjct: 74  QITD--LAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LAG 127

Query: 298 LKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADN 357
           L +L +L L  N++    PL+   LTNL  L +    +S    + + NL  L+ L+  DN
Sbjct: 128 LSNLQVLYLDLNQITNISPLA--GLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDN 183

Query: 358 ELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGN 417
           ++S   P  L +L NL   +L  N +S    S + N  +L  + L+   ++        N
Sbjct: 184 KISDISP--LASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQPVFYNNN 239

Query: 418 LTNLAILYLHSNTLLGSIPREIGNLKSLFELQL 450
           L    ++   S   +   P  I +  +     L
Sbjct: 240 LVVPNVVKGPSGAPI--APATISDNGTYASPNL 270

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  105 bits (263), Expect = 8e-25
 Identities = 66/285 (23%), Positives = 121/285 (42%), Gaps = 44/285 (15%)

Query: 271 LGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYL 330
              L N   +    ++ + ++                             +L  + TL  
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--------------------------QADLDGITTLSA 48

Query: 331 YTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSE 390
           +   ++ +I   +  L +L GLEL DN+++   P  L NLT +    L  N L     S 
Sbjct: 49  FGTGVT-TI-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL--KNVSA 102

Query: 391 IGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQL 450
           I  L+S+  LDL+  +++   P  L  L+NL +LYL  N  + +I   +  L +L  L +
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLN-QITNIS-PLAGLTNLQYLSI 158

Query: 451 GDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNL 510
           G+ ++S+ ++  L NL+ +T L   DN +S +    L +L  L  + L +NQ+   +  L
Sbjct: 159 GNAQVSD-LT-PLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQIS-DVSPL 213

Query: 511 RNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQIS 555
            N +NL  + L    +T   ++    +  L   ++        I+
Sbjct: 214 ANTSNLFIVTLTNQTIT---NQPVFYNNNLVVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  103 bits (258), Expect = 3e-24
 Identities = 61/308 (19%), Positives = 121/308 (39%), Gaps = 44/308 (14%)

Query: 101 FSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFL 160
           F   +  +   +    + +   +     ++  +  L       + TI   +  L+ L  L
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGL 68

Query: 161 YLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIP 220
            L  NQ +  + P + +L+ I  L L  N L                          ++ 
Sbjct: 69  ELKDNQIT-DLAP-LKNLTKITELELSGNPLK-------------------------NVS 101

Query: 221 PSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTL 280
             +  L ++  L L +  ++   P  +  L +L  L L  N++  +I   L  LTNL  L
Sbjct: 102 A-IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQI-TNIS-PLAGLTNLQYL 156

Query: 281 YLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIP 340
            + N   S    + + NL  L+ L+  +N+++   PL+  +L NL  ++L  N +S    
Sbjct: 157 SIGNAQVSDL--TPLANLSKLTTLKADDNKISDISPLA--SLPNLIEVHLKNNQISDV-- 210

Query: 341 SEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNL 400
           S + N  +L  + L +  +++    Y  NL       +   S +   P+ I +  + ++ 
Sbjct: 211 SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPN--VVKGPSGAPIAPATISDNGTYASP 268

Query: 401 DLSENKLS 408
           +L+ N  S
Sbjct: 269 NLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 97.1 bits (242), Expect = 4e-22
 Identities = 61/296 (20%), Positives = 116/296 (39%), Gaps = 43/296 (14%)

Query: 456 SNSISH--SLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNL 513
             +I+       L +   +A   + ++  +     +L  +T L+     +  +I  ++ L
Sbjct: 6   PTAINVIFPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEGVQYL 62

Query: 514 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN 573
            NLI L L  N +T +++       K+T ++LS N                         
Sbjct: 63  NNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNP------------------------ 96

Query: 574 IIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSL 633
            + ++   I     +  +DL++  I    P  +  LS+L  L L  NQ+     S L  L
Sbjct: 97  -LKNVSA-IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQI--TNISPLAGL 150

Query: 634 IQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNF 693
             L+YL + + ++S+  P  L NL KL  L    N+ I +I   L  L +L E+ L +N 
Sbjct: 151 TNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK-ISDIS-PLASLPNLIEVHLKNNQ 206

Query: 694 LGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS 749
           +    P  + N  +L ++ L++  +++        +     +         P   S
Sbjct: 207 ISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATIS 260

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 96.7 bits (241), Expect = 5e-22
 Identities = 63/328 (19%), Positives = 112/328 (34%), Gaps = 67/328 (20%)

Query: 367 LGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYL 426
              L N       K++++        +L  ++ L      ++ +I   +  L NL  L L
Sbjct: 15  DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLEL 70

Query: 427 HSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEE 486
             N  +  +   + NL  + EL+L  N L N +S ++  L  +  L L    ++ V P  
Sbjct: 71  KDN-QITDLA-PLKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITDVTP-- 124

Query: 487 LGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLS 546
           L  L  L +L L  NQ+  +I  L  LTNL  L +    ++ +++       KLT +   
Sbjct: 125 LAGLSNLQVLYLDLNQIT-NISPLAGLTNLQYLSIGNAQVS-DLT-PLANLSKLTTLKAD 181

Query: 547 HNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI 606
            N                          I  + P +     L  + L  N I        
Sbjct: 182 DNK-------------------------ISDISP-LASLPNLIEVHLKNNQI-------- 207

Query: 607 GKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLS 666
              S +               S L +   L  + L++  ++N       NLV  + +   
Sbjct: 208 ---SDV---------------SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGP 249

Query: 667 TNQFIQEIPIKLEKLIHLSELDLSHNFL 694
           +   I   P  +      +  +L+ N  
Sbjct: 250 SGAPIA--PATISDNGTYASPNLTWNLT 275

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 90.9 bits (226), Expect = 5e-20
 Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 21/244 (8%)

Query: 103 FSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYL 162
                +L  L+L+ NQI  + P  + N++K+  L+LS N     +   I  L  +K L L
Sbjct: 59  VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDL 114

Query: 163 SANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPS 222
           ++ Q +      +  LS ++ L+L  NQ++   P  + GL++L  L++ +  +   + P 
Sbjct: 115 TSTQITD--VTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DLTP- 168

Query: 223 LGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYL 282
           L NL+ L  L   +N +S    S + +L +L  + L NN++    P  L N +NL  + L
Sbjct: 169 LANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

Query: 283 RNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSE 342
            N + ++       NL          N + G     +   T  D     + +L+ ++ S 
Sbjct: 225 TNQTITNQPVFYNNNLVVP-------NVVKGPSGAPIAPATISDNGTYASPNLTWNLTSF 277

Query: 343 IGNL 346
           I N+
Sbjct: 278 INNV 281

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.8 bits (179), Expect = 6e-14
 Identities = 39/198 (19%), Positives = 78/198 (39%), Gaps = 15/198 (7%)

Query: 545 LSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPS 604
           ++       I  D     N        +N+         D   +  +      +      
Sbjct: 3   ITQPTAINVIFPD-PALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGV--TTIE 57

Query: 605 EIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLN 664
            +  L++LI L L+ NQ+     + L +L ++  L+LS N L N     +  L  +  L+
Sbjct: 58  GVQYLNNLIGLELKDNQI--TDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLD 113

Query: 665 LSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPR 724
           L++ Q I ++   L  L +L  L L  N +   I   +  + +L+ L++ +  +SD  P 
Sbjct: 114 LTSTQ-ITDVT-PLAGLSNLQVLYLDLNQI-TNISP-LAGLTNLQYLSIGNAQVSDLTP- 168

Query: 725 CFEEMNGLLYIDISYNEL 742
               ++ L  +    N++
Sbjct: 169 -LANLSKLTTLKADDNKI 185

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.0 bits (164), Expect = 5e-12
 Identities = 44/198 (22%), Positives = 84/198 (42%), Gaps = 17/198 (8%)

Query: 101 FSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFL 160
            + +    +  LDL   QI  + P  +  +S L+ L L  N  +   P  +  L+ L++L
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYL 156

Query: 161 YLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIP 220
            +   Q S  + P + +LS +  L    N++S   P  +  L +L E+ L +N +   + 
Sbjct: 157 SIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS-DVS 211

Query: 221 PSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTL 280
           P L N +NL I+ L N +++        NL   + +   +          +   T  D  
Sbjct: 212 P-LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP-------IAPATISDNG 263

Query: 281 YLRNNSFSSSIPSEIGNL 298
              + + + ++ S I N+
Sbjct: 264 TYASPNLTWNLTSFINNV 281

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  112 bits (283), Expect = 1e-27
 Identities = 61/208 (29%), Positives = 90/208 (43%), Gaps = 13/208 (6%)

Query: 201 GLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGN 260
            ++S  E+      L  ++PP L    +  IL+L  N L     + +     L+ L L  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 261 NKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSL- 319
            +L   + +  G L  L TL L +N    S+P     L +L++L++  NRL  S+PL   
Sbjct: 65  AEL-TKLQVD-GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLPLGAL 120

Query: 320 GNLTNLDTLYLYTNSLSGSIPSEI-GNLKSLSGLELADNELSSSIPHYL-GNLTNLAAFY 377
             L  L  LYL  N L  ++P  +      L  L LA+N L + +P  L   L NL    
Sbjct: 121 RGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLL 178

Query: 378 LYKNSLSGSIPSEIGNLKSLSNLDLSEN 405
           L +NSL  +IP        L    L  N
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  104 bits (260), Expect = 1e-24
 Identities = 56/212 (26%), Positives = 89/212 (41%), Gaps = 12/212 (5%)

Query: 321 NLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYK 380
            + +   +     +L+ ++P ++   K  + L L++N L +     L   T L    L +
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 381 NSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI- 439
             L+  +  + G L  L  LDLS N+L  S+P     L  L +L +  N  L S+P    
Sbjct: 65  AELT-KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN-RLTSLPLGAL 120

Query: 440 GNLKSLFELQLGDNKLSNSISHSL-GNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTL 498
             L  L EL L  N+L  ++   L      +  L+L +N L+ +    L  L  L  L L
Sbjct: 121 RGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 499 SDNQLQGSIPN-LRNLTNLIRLRLNRNHLTCN 529
            +N L  +IP        L    L+ N   CN
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 95.2 bits (237), Expect = 1e-21
 Identities = 51/183 (27%), Positives = 76/183 (41%), Gaps = 10/183 (5%)

Query: 106 FPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSAN 165
                 L L  N ++      +   ++L  L+L       T     G L +L  L LS N
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHN 87

Query: 166 QFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPPSL- 223
           Q    +P     L  +  L +  N+L+  +P     GL  L EL L  N LK ++PP L 
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELK-TLPPGLL 144

Query: 224 GNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYL 282
                L  L L NN+L+  +P+ +   L++L +L L  N L  +IP        L   +L
Sbjct: 145 TPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 202

Query: 283 RNN 285
             N
Sbjct: 203 HGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 92.5 bits (230), Expect = 1e-20
 Identities = 44/168 (26%), Positives = 68/168 (40%), Gaps = 10/168 (5%)

Query: 97  TLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSM 156
           T    +   +  L  L+L   ++  +     G +  L  LDLS N    ++P     L  
Sbjct: 45  TFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPA 101

Query: 157 LKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNF 214
           L  L +S N+ +  +P      L  ++ L+L  N+L   +P  +      L +L+L +N 
Sbjct: 102 LTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNN 159

Query: 215 LKGSIPPSL-GNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNN 261
           L   +P  L   L NL  L L  NSL  +IP        L    L  N
Sbjct: 160 LT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 85.2 bits (211), Expect = 3e-18
 Identities = 51/231 (22%), Positives = 79/231 (34%), Gaps = 36/231 (15%)

Query: 489 NLVKLTMLTLSDNQLQGSIPNLRNL-TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSH 547
            +     +      L  ++P   +L  +   L L+ N L      +   + +LT ++L  
Sbjct: 8   KVASHLEVNCDKRNLT-ALP--PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 548 NNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIG 607
                +++        L                       L  +DLS N  +  +P    
Sbjct: 65  A----ELTK-------LQVDG---------------TLPVLGTLDLSHNQ-LQSLPLLGQ 97

Query: 608 KLSSLIKLILRRNQLFGQLPSEL-GSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLS 666
            L +L  L +  N+L   LP      L +L+ L L  N L    P  L    KL  L+L+
Sbjct: 98  TLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156

Query: 667 TNQFIQEIPIKL-EKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHN 716
            N  + E+P  L   L +L  L L  N L   IP        L    L  N
Sbjct: 157 NNN-LTELPAGLLNGLENLDTLLLQENSL-YTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 79.4 bits (196), Expect = 3e-16
 Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 9/173 (5%)

Query: 572 NNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELG 631
              + +LPP++       ++ LS N +     + +   + L +L L R +L        G
Sbjct: 19  KRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDG 74

Query: 632 SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLS 690
           +L  L  LDLS N+L  S+P     L  L  L++S N+ +  +P+     L  L EL L 
Sbjct: 75  TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLK 132

Query: 691 HNFLGKEIPSQIC-NMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 742
            N L K +P  +      LE L+L++NNL++        +  L  + +  N L
Sbjct: 133 GNEL-KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 77.5 bits (191), Expect = 1e-15
 Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 11/173 (6%)

Query: 572 NNIIGSLPPEIGDS-SQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSEL 630
            N++ +         ++L  ++L    +        G L  L  L L  NQL   LP   
Sbjct: 40  ENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQL-QSLPLLG 96

Query: 631 GSLIQLEYLDLSSNRLSNSIPRSL-GNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELD 688
            +L  L  LD+S NRL+ S+P      L +L  L L  N+ ++ +P  L      L +L 
Sbjct: 97  QTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLS 154

Query: 689 LSHNFLGKEIPSQIC-NMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYN 740
           L++N L  E+P+ +   + +L+ L L  N+L   IP+ F   + L +  +  N
Sbjct: 155 LANNNL-TELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.0 bits (156), Expect = 4e-11
 Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 7/143 (4%)

Query: 602 IPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLH 661
           +P ++        L L  N L+    + L    +L  L+L    L+  +    G L  L 
Sbjct: 25  LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLG 80

Query: 662 YLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQI-CNMRSLEMLNLSHNNLSD 720
            L+LS NQ +Q +P+  + L  L+ LD+S N L   +P      +  L+ L L  N L  
Sbjct: 81  TLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKT 138

Query: 721 FIPRCFEEMNGLLYIDISYNELH 743
             P        L  + ++ N L 
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLT 161

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  110 bits (276), Expect = 3e-25
 Identities = 61/303 (20%), Positives = 112/303 (36%), Gaps = 20/303 (6%)

Query: 101 FSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFL 160
           F   +F      +L+   +   +      ++ +  +  +++    ++   I  L  +  L
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKL 70

Query: 161 YLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIP 220
           +L+ N+ +  I P + +L  +  L L +N++       +  L  L  L+L  N +   I 
Sbjct: 71  FLNGNKLT-DIKP-LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGIS-DIN 125

Query: 221 PSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTL 280
             L +L  L  LYL NN +  +  + +  L  L +L+L +N++   I   L  LT L  L
Sbjct: 126 G-LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNL 180

Query: 281 YLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSG--- 337
           YL  N  S      +  LK+L +LEL              NL   +T+     SL     
Sbjct: 181 YLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238

Query: 338 -SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKS 396
            S   +         L    NE+S      +      A F+         + +   ++  
Sbjct: 239 ISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDG 298

Query: 397 LSN 399
              
Sbjct: 299 TVI 301

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  110 bits (275), Expect = 4e-25
 Identities = 63/271 (23%), Positives = 109/271 (40%), Gaps = 18/271 (6%)

Query: 201 GLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGN 260
             +   +  L    +  ++      L ++  +  +N+ +  S+   I  L +++ L L  
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 74

Query: 261 NKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLG 320
           NKL   I   L NL NL  L+L  N         + +LK L  L L  N ++  I   L 
Sbjct: 75  NKL-TDIK-PLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGIS-DIN-GLV 128

Query: 321 NLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYK 380
           +L  L++LYL  N ++    + +  L  L  L L DN++S  +P  L  LT L   YL K
Sbjct: 129 HLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 184

Query: 381 NSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIG 440
           N +S  +   +  LK+L  L+L   +      +   NL     +     +L    P  I 
Sbjct: 185 NHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIIS 240

Query: 441 NLKSLFELQLGDNKLSNSISHSLGNLTHMTL 471
           +     +  +  +    +   S      +T+
Sbjct: 241 DDGDYEKPNVKWHLPEFTNEVSFIFYQPVTI 271

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  101 bits (252), Expect = 3e-22
 Identities = 56/306 (18%), Positives = 105/306 (34%), Gaps = 43/306 (14%)

Query: 445 LFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ 504
           + E       +   I              L   +++  +      L  +  +  +++ ++
Sbjct: 1   MGETITVSTPIKQ-IF-PDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 505 GSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNL 564
            S+  ++ L N+ +L LN N LT +I         L ++ L  N                
Sbjct: 57  -SVQGIQYLPNVTKLFLNGNKLT-DIK-PLTNLKNLGWLFLDENK--------------- 98

Query: 565 GTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFG 624
                     I  L   + D  +L  + L  N I   I   +  L  L  L L  N++  
Sbjct: 99  ----------IKDLSS-LKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKITD 145

Query: 625 QLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHL 684
              + L  L +L+ L L  N++S+ +P  L  L KL  L LS N  I ++   L  L +L
Sbjct: 146 --ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH-ISDLR-ALAGLKNL 199

Query: 685 SELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHG 744
             L+L       +  +   N+     +  +  +L    P    +       ++ ++    
Sbjct: 200 DVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPEF 257

Query: 745 PIPNST 750
               S 
Sbjct: 258 TNEVSF 263

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 99.8 bits (248), Expect = 7e-22
 Identities = 51/256 (19%), Positives = 95/256 (37%), Gaps = 21/256 (8%)

Query: 441 NLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSD 500
                 +  L    ++++++     L  +  +   ++ +  V  + +  L  +T L L+ 
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNG 74

Query: 501 NQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQIS--SDW 558
           N+L   I  L NL NL  L L+ N +  ++  S     KL  + L HN     IS  +  
Sbjct: 75  NKLT-DIKPLTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHN----GISDINGL 127

Query: 559 GKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILR 618
              P L +  +  NN I  +   +   ++L  + L  N I       +  L+ L  L L 
Sbjct: 128 VHLPQLESLYLG-NNKITDITV-LSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLS 183

Query: 619 RNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL 678
           +N +       L  L  L+ L+L S    N       NLV  + +  +    +    I  
Sbjct: 184 KNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEII-- 239

Query: 679 EKLIHLSELDLSHNFL 694
                  + ++  +  
Sbjct: 240 SDDGDYEKPNVKWHLP 255

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 98.1 bits (245), Expect = 2e-23
 Identities = 28/186 (15%), Positives = 70/186 (37%), Gaps = 10/186 (5%)

Query: 297 NLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELAD 356
             K+     LG++       ++   + +L  + L   +++  + + I    ++  L + +
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINN 75

Query: 357 NELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLG 416
              ++  P  +  L+NL    +    ++      +  L SL+ LD+S +    SI   + 
Sbjct: 76  IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 417 NLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYD 476
            L  +  + L  N  +  I   +  L  L  L +  + + +     + +   +  L  + 
Sbjct: 134 TLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YRG-IEDFPKLNQLYAFS 190

Query: 477 NALSGV 482
             + G 
Sbjct: 191 QTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 95.4 bits (238), Expect = 1e-22
 Identities = 28/164 (17%), Positives = 66/164 (40%), Gaps = 7/164 (4%)

Query: 222 SLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLY 281
           +   + +L  + L N +++  + + I    ++  L + N       P+    L+NL+ L 
Sbjct: 39  TEAQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHATNYNPI--SGLSNLERLR 94

Query: 282 LRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPS 341
           +     +S     +  L SL++L++  +  + SI   +  L  ++++ L  N     I  
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M 153

Query: 342 EIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSG 385
            +  L  L  L +  + +       + +   L   Y +  ++ G
Sbjct: 154 PLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 93.9 bits (234), Expect = 5e-22
 Identities = 30/185 (16%), Positives = 62/185 (33%), Gaps = 10/185 (5%)

Query: 321 NLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYK 380
                    L  +S +         + SL+ + LA+  ++      +    N+    +  
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINN 75

Query: 381 NSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIG 440
              +    + I  L +L  L +    ++     +L  LT+L +L +  +    SI  +I 
Sbjct: 76  IHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 441 NLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSD 500
            L  +  + L  N     I   L  L  +  L +  + +       + +  KL  L    
Sbjct: 134 TLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFS 190

Query: 501 NQLQG 505
             + G
Sbjct: 191 QTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 92.3 bits (230), Expect = 2e-21
 Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 9/181 (4%)

Query: 369 NLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHS 428
                    L ++S +         + SL+ + L+   ++      +    N+  L +++
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINN 75

Query: 429 NTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELG 488
                  P  I  L +L  L++    +++    +L  LT +TLL +  +A    I  ++ 
Sbjct: 76  IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 489 NLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHN 548
            L K+  + LS N     I  L+ L  L  L +  + +  +        PKL  +     
Sbjct: 134 TLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQLYAFSQ 191

Query: 549 N 549
            
Sbjct: 192 T 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 90.8 bits (226), Expect = 5e-21
 Identities = 25/185 (13%), Positives = 67/185 (36%), Gaps = 10/185 (5%)

Query: 153 NLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTS 212
                    L  +  +         ++ +  + L    ++      +    ++ +L + +
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINN 75

Query: 213 NFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLG 272
                  P  +  L+NL  L +    ++      +  L SL+ L + ++    SI   + 
Sbjct: 76  IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 273 NLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYT 332
            L  ++++ L  N   + I   +  L  L  L +  + ++    +   +   L+ LY ++
Sbjct: 134 TLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFS 190

Query: 333 NSLSG 337
            ++ G
Sbjct: 191 QTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 85.0 bits (211), Expect = 5e-19
 Identities = 30/183 (16%), Positives = 63/183 (34%), Gaps = 7/183 (3%)

Query: 107 PHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQ 166
                    +             ++ L Y+ L++ + +      I     +K L ++   
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH 77

Query: 167 FSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNL 226
            +   P  I  LS +E L +    ++      + GL+SL  L ++ +    SI   +  L
Sbjct: 78  ATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 227 TNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNS 286
             +  + L  N     I   +  L  L SL +  + +       + +   L+ LY  + +
Sbjct: 136 PKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQT 192

Query: 287 FSS 289
              
Sbjct: 193 IGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 83.5 bits (207), Expect = 2e-18
 Identities = 39/209 (18%), Positives = 74/209 (35%), Gaps = 34/209 (16%)

Query: 512 NLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSV 571
                +   L ++    NI+E+      LT+I L++ N                      
Sbjct: 21  TFKAYLNGLLGQSSTA-NITEAQM--NSLTYITLANIN---------------------- 55

Query: 572 NNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELG 631
              +  L   I  +  +  + ++  H      + I  LS+L +L +    +       L 
Sbjct: 56  ---VTDLTG-IEYAHNIKDLTINNIHA--TNYNPISGLSNLERLRIMGKDVTSDKIPNLS 109

Query: 632 SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSH 691
            L  L  LD+S +   +SI   +  L K++ ++LS N  I +I   L+ L  L  L++  
Sbjct: 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQF 168

Query: 692 NFLGKEIPSQICNMRSLEMLNLSHNNLSD 720
           + +       I +   L  L      +  
Sbjct: 169 DGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 80.8 bits (200), Expect = 1e-17
 Identities = 29/164 (17%), Positives = 60/164 (36%), Gaps = 7/164 (4%)

Query: 100 DFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKF 159
           + + +    L Y+ L    +  +    I     +K L +++   +   P  I  LS L+ 
Sbjct: 37  NITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNP--ISGLSNLER 92

Query: 160 LYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSI 219
           L +     +    P +  L+ +  L +  +     I  ++  L  +N + L+ N     I
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

Query: 220 PPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKL 263
            P L  L  L  L +  + +       I +   L+ L   +  +
Sbjct: 153 MP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 80.0 bits (198), Expect = 3e-17
 Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 7/157 (4%)

Query: 586 SQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNR 645
           + L  I L+  ++     + I    ++  L +          + +  L  LE L +    
Sbjct: 44  NSLTYITLANINV--TDLTGIEYAHNIKDLTINNIHA--TNYNPISGLSNLERLRIMGKD 99

Query: 646 LSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNM 705
           +++    +L  L  L  L++S +     I  K+  L  ++ +DLS+N    +I   +  +
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTL 158

Query: 706 RSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 742
             L+ LN+  + + D+     E+   L  +      +
Sbjct: 159 PELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 69.2 bits (170), Expect = 1e-13
 Identities = 24/139 (17%), Positives = 48/139 (34%), Gaps = 5/139 (3%)

Query: 103 FSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYL 162
                ++  L +         P  I  +S L+ L +     +    P +  L+ L  L +
Sbjct: 62  IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 163 SANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPS 222
           S +     I  +I  L  + ++ L  N     I   +  L  L  L +  + +       
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRG-- 176

Query: 223 LGNLTNLAILYLHNNSLSG 241
           + +   L  LY  + ++ G
Sbjct: 177 IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.9 bits (164), Expect = 1e-12
 Identities = 24/150 (16%), Positives = 55/150 (36%), Gaps = 9/150 (6%)

Query: 591 IDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSI 650
             L A+     IP       + +  +L ++            +  L Y+ L++  +++  
Sbjct: 6   TGLKASQDNVNIPDS--TFKAYLNGLLGQSST---ANITEAQMNSLTYITLANINVTDLT 60

Query: 651 PRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEM 710
              +     +  L ++           +  L +L  L +    +  +    +  + SL +
Sbjct: 61  G--IEYAHNIKDLTINNIH-ATNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116

Query: 711 LNLSHNNLSDFIPRCFEEMNGLLYIDISYN 740
           L++SH+   D I      +  +  ID+SYN
Sbjct: 117 LDISHSAHDDSILTKINTLPKVNSIDLSYN 146

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 98.9 bits (247), Expect = 5e-23
 Identities = 60/234 (25%), Positives = 96/234 (41%), Gaps = 34/234 (14%)

Query: 203 SSLNELALTSNFLKGSIPP-SLGNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGN 260
            S   L L+ N L+  +   S  +   L +L L    +  +I      +L  LS+L L  
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85

Query: 261 NKLCGSIPL-FLGNLTNLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIPLS 318
           N +  S+ L     L++L  L     +  +S+ +   G+LK+L  L +  N +  S  L 
Sbjct: 86  NPI-QSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQ-SFKLP 142

Query: 319 --LGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAF 376
               NLTNL+ L L +N +  SI     +L+ L  + L +  L                 
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQ-SIYC--TDLRVLHQMPLLNLSL----------------- 182

Query: 377 YLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPH-SLGNLTNLAILYLHSN 429
            L  N ++  I         L  L L  N+L  S+P      LT+L  ++LH+N
Sbjct: 183 DLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 98.9 bits (247), Expect = 6e-23
 Identities = 60/238 (25%), Positives = 90/238 (37%), Gaps = 14/238 (5%)

Query: 289 SSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI-GNLK 347
             IP  +    S   L+L  N L      S  +   L  L L    +  +I      +L 
Sbjct: 20  YKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLS 76

Query: 348 SLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSENK 406
            LS L L  N + S        L++L      + +L+ S+ +   G+LK+L  L+++ N 
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNL 135

Query: 407 L-SGSIPHSLGNLTNLAILYLHSNTLLGSIPREI----GNLKSL-FELQLGDNKLSNSIS 460
           + S  +P    NLTNL  L L SN  + SI          +  L   L L  N ++  I 
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQ 193

Query: 461 HSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIR 518
                   +  LAL  N L  V       L  L  + L  N    S P +  L+  + 
Sbjct: 194 PGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 251

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 98.5 bits (246), Expect = 7e-23
 Identities = 56/218 (25%), Positives = 90/218 (41%), Gaps = 17/218 (7%)

Query: 323 TNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNS 382
            +   L L  N L         +   L  L+L+  E+ +       +L++L+   L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 383 LSGSIPSEI-GNLKSLSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLGSIPRE-- 438
           +  S+       L SL  L   E  L+ S+ +   G+L  L  L +  N L+ S      
Sbjct: 88  IQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHN-LIQSFKLPEY 144

Query: 439 IGNLKSLFELQLGDNKLSNSISH----SLGNLTHMTL-LALYDNALSGVIPEELGNLVKL 493
             NL +L  L L  NK+  SI       L  +  + L L L  N ++  I       ++L
Sbjct: 145 FSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRL 202

Query: 494 TMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCN 529
             L L  NQL+ S+P+     LT+L ++ L+ N   C+
Sbjct: 203 KELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 239

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 95.0 bits (237), Expect = 1e-21
 Identities = 52/244 (21%), Positives = 87/244 (35%), Gaps = 35/244 (14%)

Query: 432 LGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLV 491
              IP  +    S   L L  N L +  S+S  +   + +L L    +  +      +L 
Sbjct: 19  FYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76

Query: 492 KLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNN 549
            L+ L L+ N +Q S+       L++L +L     +L    +   G    L  ++++HN 
Sbjct: 77  HLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN- 134

Query: 550 FYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI-GK 608
               I S          F         +L         L  +DLS+N I   I       
Sbjct: 135 ---LIQS----FKLPEYFS--------NLT-------NLEHLDLSSNKI-QSIYCTDLRV 171

Query: 609 LSSL----IKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLN 664
           L  +    + L L  N +   +       I+L+ L L +N+L +        L  L  + 
Sbjct: 172 LHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIW 230

Query: 665 LSTN 668
           L TN
Sbjct: 231 LHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 94.7 bits (236), Expect = 2e-21
 Identities = 54/208 (25%), Positives = 78/208 (37%), Gaps = 14/208 (6%)

Query: 111 YLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSG 169
            LDL  N +  +      +  +L+ LDLS      TI      +LS L  L L+ N    
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ- 89

Query: 170 RIPPQI-GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPPSL-GNL 226
            +       LS ++ L   +  L+  + +   G L +L EL +  N ++    P    NL
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 227 TNLAILYLHNNSLSGSIPSEI----GNLKSLS-SLALGNNKLCGSIPLFLGNLTNLDTLY 281
           TNL  L L +N +  SI          +  L+ SL L  N +   I         L  L 
Sbjct: 149 TNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLKELA 206

Query: 282 LRNNSFSSSIPSEIGNLKSLSILELGEN 309
           L  N   S        L SL  + L  N
Sbjct: 207 LDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 90.0 bits (224), Expect = 5e-20
 Identities = 54/244 (22%), Positives = 89/244 (36%), Gaps = 39/244 (15%)

Query: 386 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKS 444
            IP  +    S  NLDLS N L     +S  +   L +L L    +  +I      +L  
Sbjct: 21  KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSH 77

Query: 445 LFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ 504
           L  L L  N + +    +   L+ +  L   +  L+ +    +G+L  L  L ++ N +Q
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 505 GSIPN---LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFI----DLSHNNFYGQISSD 557
            S        NLTNL  L L+ N +         +  ++  +    DLS N         
Sbjct: 138 -SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-------- 188

Query: 558 WGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI-GKLSSLIKLI 616
                            +  + P      +L  + L  N  +  +P  I  +L+SL K+ 
Sbjct: 189 -----------------MNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIW 230

Query: 617 LRRN 620
           L  N
Sbjct: 231 LHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 88.1 bits (219), Expect = 3e-19
 Identities = 54/199 (27%), Positives = 83/199 (41%), Gaps = 16/199 (8%)

Query: 97  TLHDFSFSSFPHLAYLDLQVNQIFGIIPPQI-GNISKLKYLDLSSNSFSGTIPPQI-GNL 154
            L  +SF SFP L  LDL   +I   I      ++S L  L L+ N    ++       L
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGL 99

Query: 155 SMLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTS 212
           S L+ L       +  +     GHL  ++ L++  N +      E    L++L  L L+S
Sbjct: 100 SSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 213 NFLKGSIPP----SLGNLTNLAI-LYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSI 267
           N ++ SI       L  +  L + L L  N ++  I         L  LAL  N+L  S+
Sbjct: 159 NKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQL-KSV 215

Query: 268 PL-FLGNLTNLDTLYLRNN 285
           P      LT+L  ++L  N
Sbjct: 216 PDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 83.9 bits (208), Expect = 6e-18
 Identities = 59/235 (25%), Positives = 89/235 (37%), Gaps = 36/235 (15%)

Query: 514 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN 573
            +   L L+ N L    S SF   P+L  +DLS                           
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE------------------------ 63

Query: 574 IIGSLPPEIGDS-SQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSELG 631
            I ++      S S L  + L+ N I   +       LSSL KL+     L       +G
Sbjct: 64  -IQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIG 121

Query: 632 SLIQLEYLDLSSNRLSN-SIPRSLGNLVKLHYLNLSTNQFIQEIPI----KLEKLIHLS- 685
            L  L+ L+++ N + +  +P    NL  L +L+LS+N+ IQ I       L ++  L+ 
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNL 180

Query: 686 ELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYN 740
            LDLS N +   I         L+ L L  N L       F+ +  L  I +  N
Sbjct: 181 SLDLSLNPM-NFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 38/175 (21%), Positives = 71/175 (40%), Gaps = 13/175 (7%)

Query: 577 SLPPEIGDSSQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSEL-GSLI 634
            +P  +  S++   +DLS N +   + S        L  L L R ++   +      SL 
Sbjct: 21  KIPDNLPFSTK--NLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLS 76

Query: 635 QLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNF 693
            L  L L+ N + +    +   L  L  L       +  +       L  L EL+++HN 
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL 135

Query: 694 LGK-EIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGL----LYIDISYNELH 743
           +   ++P    N+ +LE L+LS N +          ++ +    L +D+S N ++
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 97.6 bits (243), Expect = 5e-22
 Identities = 49/263 (18%), Positives = 93/263 (35%), Gaps = 15/263 (5%)

Query: 276 NLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSL 335
           +      + +  +  IPS++   ++   L     +L      +     +L+ + +  N +
Sbjct: 10  SNRVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 336 SGSIPSEI-GNLKSLSGLELAD-NELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-G 392
              I +++  NL  L  + +   N L    P    NL NL    +    +   +P     
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKI 125

Query: 393 NLKSLSNLDLSENKLSGSIPH-SLGNLT-NLAILYLHSNTLLGSIPREIGNLKSLFELQL 450
           +      LD+ +N    +I   S   L+    IL+L+ N  +  I     N   L EL L
Sbjct: 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNL 184

Query: 451 -GDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN 509
             +N L    +      +   +L +    +  +    L NL KL   +  + +    +P 
Sbjct: 185 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 241

Query: 510 LRNLTNLIRLRLNRN-HLTCNIS 531
           L  L  L+   L    H     +
Sbjct: 242 LEKLVALMEASLTYPSHCCAFAN 264

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 96.1 bits (239), Expect = 2e-21
 Identities = 54/271 (19%), Positives = 98/271 (36%), Gaps = 35/271 (12%)

Query: 428 SNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEE- 486
             + +  IP ++   ++  EL+    KL      +      +  + +  N +  VI  + 
Sbjct: 17  QESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74

Query: 487 LGNLVKLTMLTLSD-NQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFI 543
             NL KL  + +   N L   I     +NL NL  L ++   +            +   +
Sbjct: 75  FSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 133

Query: 544 DLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIP 603
           D+  N     I           +F               G S +  ++ L+ N I  +I 
Sbjct: 134 DIQDNINIHTIER--------NSFV--------------GLSFESVILWLNKNGIQ-EIH 170

Query: 604 SEIGKLSSLIKLILRRNQLFGQLPSE-LGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHY 662
           +     + L +L L  N    +LP++          LD+S  R+ +     L NL KL  
Sbjct: 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA 230

Query: 663 LNLSTNQFIQEIPIKLEKLIHLSELDLSHNF 693
            +       +++P  LEKL+ L E  L++  
Sbjct: 231 RSTYNL---KKLPT-LEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 83.3 bits (206), Expect = 3e-17
 Identities = 43/237 (18%), Positives = 75/237 (31%), Gaps = 16/237 (6%)

Query: 106 FPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLS- 163
             +   L   + ++  I          L+ +++S N     I   +  NL  L  + +  
Sbjct: 29  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 164 ANQFSGRIPPQI-GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPP 221
           AN     I P+   +L  ++ L +    +   +P            L +  N    +I  
Sbjct: 89  ANNLL-YINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIER 146

Query: 222 -SLGNLT-NLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIPLFLGNLTNLD 278
            S   L+    IL+L+ N +   I +      +        NN L           +   
Sbjct: 147 NSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 205

Query: 279 TLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNS 334
            L +       S+PS    NLK L        +    +P +L  L  L    L   S
Sbjct: 206 ILDISRTRI-HSLPSYGLENLKKLRARSTYNLK---KLP-TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 75.2 bits (185), Expect = 1e-14
 Identities = 45/206 (21%), Positives = 74/206 (35%), Gaps = 13/206 (6%)

Query: 87  INLTNVGLKGTLHDFSFSSFPHLAYLDLQ-VNQIFGIIPPQIGNISKLKYLDLSSNSFSG 145
           I ++   +   +    FS+ P L  + ++  N +  I P    N+  L+YL +S+     
Sbjct: 59  IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK- 117

Query: 146 TIPPQI-GNLSMLKFLYLSANQFSGRIPPQI--GHLSYIEALHLFKNQLSGPIPHEVGGL 202
            +P     +      L +  N     I      G       L L KN +   I +     
Sbjct: 118 HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNG 176

Query: 203 SSLNELALTSNFLKGSIPP-SLGNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGN 260
           + L+EL L+ N     +P       +   IL +    +  S+PS    NLK L + +  N
Sbjct: 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYN 235

Query: 261 NKLCGSIPLFLGNLTNLDTLYLRNNS 286
            K    +P     L  L    L   S
Sbjct: 236 LK---KLPTL-EKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.9 bits (184), Expect = 2e-14
 Identities = 49/253 (19%), Positives = 87/253 (34%), Gaps = 32/253 (12%)

Query: 494 TMLTLSDNQLQGSIPNLRNL-TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYG 552
            +    ++++   IP   +L  N I LR     L      +F     L  I++S N+   
Sbjct: 12  RVFLCQESKVT-EIP--SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 553 QISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI-GKLSS 611
            I +          F                +  +LH I +   + +  I  E    L +
Sbjct: 69  VIEA--------DVFS---------------NLPKLHEIRIEKANNLLYINPEAFQNLPN 105

Query: 612 LIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSL--GNLVKLHYLNLSTNQ 669
           L  L++    +           +Q   LD+  N   ++I R+   G   +   L L+ N 
Sbjct: 106 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165

Query: 670 FIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQIC-NMRSLEMLNLSHNNLSDFIPRCFEE 728
            IQEI         L EL+LS N   +E+P+ +        +L++S   +        E 
Sbjct: 166 -IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224

Query: 729 MNGLLYIDISYNE 741
           +  L        +
Sbjct: 225 LKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.4 bits (175), Expect = 3e-13
 Identities = 41/178 (23%), Positives = 75/178 (42%), Gaps = 7/178 (3%)

Query: 572 NNIIGSLPPEI-GDSSQLHVIDLSANHIIGKIPSEI-GKLSSLIKL-ILRRNQLFGQLPS 628
              +  +          L  I++S N ++  I +++   L  L ++ I + N L    P 
Sbjct: 39  LTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE 98

Query: 629 ELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIK-LEKL-IHLSE 686
              +L  L+YL +S+  + +       + ++   L++  N  I  I       L      
Sbjct: 99  AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI 158

Query: 687 LDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPR-CFEEMNGLLYIDISYNELH 743
           L L+ N + +EI +   N   L+ LNLS NN  + +P   F   +G + +DIS   +H
Sbjct: 159 LWLNKNGI-QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 65.6 bits (160), Expect = 2e-11
 Identities = 41/218 (18%), Positives = 71/218 (32%), Gaps = 15/218 (6%)

Query: 97  TLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI--GNL 154
            ++  +F + P+L YL +    I  +      +  +   LD+  N    TI      G  
Sbjct: 94  YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS 153

Query: 155 SMLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTS 212
                L+L+ N     I           E      N L   +P++V  G S    L ++ 
Sbjct: 154 FESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEE-LPNDVFHGASGPVILDISR 211

Query: 213 NFLKGSIPP-SLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFL 271
             +  S+P   L NL  L     +N      +P+ +  L +L   +L     C +   F 
Sbjct: 212 TRIH-SLPSYGLENLKKLRARSTYNLK---KLPT-LEKLVALMEASLTYPSHCCA---FA 263

Query: 272 GNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGEN 309
                +  L+   N        +           L E+
Sbjct: 264 NWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAED 301

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 96.3 bits (240), Expect = 6e-22
 Identities = 64/270 (23%), Positives = 105/270 (38%), Gaps = 20/270 (7%)

Query: 232 LYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSI 291
                  +      +           L    +  ++      L ++D +   N+   S  
Sbjct: 7   TITVPTPIKQIFSDD--AFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV- 61

Query: 292 PSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSG 351
              I  L +++ L L  N+L    PL+  NL NL  L+L  N +   + S + +LK L  
Sbjct: 62  -QGIQYLPNVTKLFLNGNKLTDIKPLA--NLKNLGWLFLDENKVK-DL-SSLKDLKKLKS 116

Query: 352 LELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSI 411
           L L  N +S      L +L  L + YL  N ++    + +  L  L  L L +N++S  I
Sbjct: 117 LSLEHNGISDING--LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DI 171

Query: 412 PHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTL 471
              L  LT L  LYL  N +  S  R +  LK+L  L+L   +  N   +   NL     
Sbjct: 172 V-PLAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 228

Query: 472 LALYDNALSGVIPEELGNLVKLTMLTLSDN 501
           +   D +L  V PE + +        +  +
Sbjct: 229 VKNTDGSL--VTPEIISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 93.2 bits (232), Expect = 6e-21
 Identities = 62/258 (24%), Positives = 107/258 (41%), Gaps = 18/258 (6%)

Query: 201 GLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGN 260
             +   +  L    +  ++      L ++  +  +N+ +  S+   I  L +++ L L  
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 77

Query: 261 NKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLG 320
           NKL   I   L NL NL  L+L  N       S + +LK L  L L  N ++  I   L 
Sbjct: 78  NKL-TDIK-PLANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGIS-DIN-GLV 131

Query: 321 NLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYK 380
           +L  L++LYL  N ++    + +  L  L  L L DN++S  +P  L  LT L   YL K
Sbjct: 132 HLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187

Query: 381 NSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIG 440
           N +S  +   +  LK+L  L+L   +      +   NL     +     +L+   P  I 
Sbjct: 188 NHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIIS 243

Query: 441 NLKSLFELQLGDNKLSNS 458
           +     +  +  +    +
Sbjct: 244 DDGDYEKPNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 93.2 bits (232), Expect = 6e-21
 Identities = 60/235 (25%), Positives = 95/235 (40%), Gaps = 16/235 (6%)

Query: 223 LGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYL 282
                      L   S++ ++      L S+  +   N+ +  S+   +  L N+  L+L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI-KSVQ-GIQYLPNVTKLFL 75

Query: 283 RNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSE 342
             N  +      + NLK+L  L L EN++     L   +L  L +L L  N +S  I   
Sbjct: 76  NGNKLTDI--KPLANLKNLGWLFLDENKVKDLSSLK--DLKKLKSLSLEHNGIS-DING- 129

Query: 343 IGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDL 402
           + +L  L  L L +N+++      L  LT L    L  N +S  I   +  L  L NL L
Sbjct: 130 LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYL 185

Query: 403 SENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSN 457
           S+N +S  +  +L  L NL +L L S   L        NL     ++  D  L  
Sbjct: 186 SKNHIS-DLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 91.3 bits (227), Expect = 3e-20
 Identities = 57/257 (22%), Positives = 103/257 (40%), Gaps = 18/257 (7%)

Query: 101 FSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFL 160
           FS  +F      +L+   +   +      ++ +  +  +++    ++   I  L  +  L
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKL 73

Query: 161 YLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIP 220
           +L+ N+ +  I P + +L  +  L L +N++       +  L  L  L+L  N +   I 
Sbjct: 74  FLNGNKLT-DIKP-LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGIS-DIN 128

Query: 221 PSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTL 280
             L +L  L  LYL NN +  +  + +  L  L +L+L +N++   I   L  LT L  L
Sbjct: 129 G-LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNL 183

Query: 281 YLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIP 340
           YL  N  S      +  LK+L +LEL              NL   +T+     SL    P
Sbjct: 184 YLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--P 239

Query: 341 SEIGNLKSLSGLELADN 357
             I +        +  +
Sbjct: 240 EIISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 85.5 bits (212), Expect = 3e-18
 Identities = 67/276 (24%), Positives = 115/276 (41%), Gaps = 22/276 (7%)

Query: 177 HLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHN 236
             +     +L K  ++  +      L+S++++   ++ +K S+   +  L N+  L+L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNG 77

Query: 237 NSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIG 296
           N L+  I   + NLK+L  L L  NK+   +   L +L  L +L L +N  S    + + 
Sbjct: 78  NKLT-DI-KPLANLKNLGWLFLDENKV-KDLS-SLKDLKKLKSLSLEHNGISD--INGLV 131

Query: 297 NLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELAD 356
           +L  L  L LG N++     LS   LT LDTL L  N +S  I   +  L  L  L L+ 
Sbjct: 132 HLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSK 187

Query: 357 NELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNL------KSLSNLDLSENKLSGS 410
           N +S      L  L NL    L+         +   NL      K+     ++   +S  
Sbjct: 188 NHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDD 245

Query: 411 IPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLF 446
             +   N+      + +  + +   P  IG  K+ F
Sbjct: 246 GDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARF 281

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 84.3 bits (209), Expect = 5e-18
 Identities = 52/267 (19%), Positives = 96/267 (35%), Gaps = 41/267 (15%)

Query: 456 SNSISH--SLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNL 513
              I    S           L   +++  +      L  +  +  +++ ++ S+  ++ L
Sbjct: 11  PTPIKQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQGIQYL 67

Query: 514 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN 573
            N+ +L LN N LT +I         L ++ L  N                         
Sbjct: 68  PNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENK------------------------ 101

Query: 574 IIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSL 633
            +  L   + D  +L  + L  N I     + +  L  L  L L  N++     + L  L
Sbjct: 102 -VKDLSS-LKDLKKLKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKITD--ITVLSRL 155

Query: 634 IQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNF 693
            +L+ L L  N++S+ +P  L  L KL  L LS N  I ++   L  L +L  L+L    
Sbjct: 156 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELFSQE 211

Query: 694 LGKEIPSQICNMRSLEMLNLSHNNLSD 720
              +  +   N+     +  +  +L  
Sbjct: 212 CLNKPINHQSNLVVPNTVKNTDGSLVT 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 82.8 bits (205), Expect = 2e-17
 Identities = 51/239 (21%), Positives = 91/239 (38%), Gaps = 19/239 (7%)

Query: 441 NLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSD 500
                 +  L    ++++++     L  +  +   ++ +  V  + +  L  +T L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNG 77

Query: 501 NQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQIS--SDW 558
           N+L   I  L NL NL  L L+ N +  ++  S     KL  + L HN     IS  +  
Sbjct: 78  NKLT-DIKPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHN----GISDINGL 130

Query: 559 GKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILR 618
              P L +  +  NN I  +   +   ++L  + L  N I       +  L+ L  L L 
Sbjct: 131 VHLPQLESLYLG-NNKITDITV-LSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLS 186

Query: 619 RNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIK 677
           +N +       L  L  L+ L+L S    N       NLV  + +  +    +    I 
Sbjct: 187 KNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 243

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 81.6 bits (202), Expect = 5e-17
 Identities = 52/245 (21%), Positives = 93/245 (37%), Gaps = 20/245 (8%)

Query: 507 IPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISS--DWGKCPNL 564
           I +       I+  L +  +T     +      +  I  +++     I S       PN+
Sbjct: 17  IFSDDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNS----DIKSVQGIQYLPNV 70

Query: 565 GTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFG 624
               ++  N +  + P + +   L  + L  N +  K  S +  L  L  L L  N +  
Sbjct: 71  TKLFLN-GNKLTDIKP-LANLKNLGWLFLDENKV--KDLSSLKDLKKLKSLSLEHNGI-- 124

Query: 625 QLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHL 684
              + L  L QLE L L +N++++     L  L KL  L+L  NQ I +I   L  L  L
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKL 180

Query: 685 SELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHG 744
             L LS N +  ++   +  +++L++L L      +        +     +  +   L  
Sbjct: 181 QNLYLSKNHI-SDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 238

Query: 745 PIPNS 749
           P   S
Sbjct: 239 PEIIS 243

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 79.7 bits (197), Expect = 2e-16
 Identities = 52/210 (24%), Positives = 87/210 (41%), Gaps = 14/210 (6%)

Query: 103 FSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYL 162
               P++  L L  N++  I P  + N+  L +L L  N     +   + +L  LK L L
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSL 119

Query: 163 SANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPS 222
             N  S  I   + HL  +E+L+L  N+++      +  L+ L+ L+L  N +   I P 
Sbjct: 120 EHNGIS-DING-LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVP- 173

Query: 223 LGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYL 282
           L  LT L  LYL  N +S  +   +  LK+L  L L + +          NL   +T+  
Sbjct: 174 LAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 231

Query: 283 RNNSFSSSIPSEIGNLKSLSILELGENRLN 312
            + S  +  P  I +        +  +   
Sbjct: 232 TDGSLVT--PEIISDDGDYEKPNVKWHLPE 259

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 93.9 bits (234), Expect = 3e-21
 Identities = 58/185 (31%), Positives = 84/185 (45%), Gaps = 12/185 (6%)

Query: 227 TNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIP--LFLGNLTNLDTLYLRN 284
            +   L L +N LS         L  L  L L +NKL  ++P  +F   L NL+TL++ +
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKE-LKNLETLWVTD 94

Query: 285 NSFSSSIPSEI-GNLKSLSILELGENRLNGSIPLSL-GNLTNLDTLYLYTNSLSGSIPSE 342
           N    ++P  +   L +L+ L L  N+L  S+P  +  +LT L  L L  N L  S+P  
Sbjct: 95  NKL-QALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKG 151

Query: 343 I-GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKSLSNL 400
           +   L SL  L L +N+L          LT L    L  N L   +P     +L+ L  L
Sbjct: 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKML 210

Query: 401 DLSEN 405
            L EN
Sbjct: 211 QLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 93.9 bits (234), Expect = 3e-21
 Identities = 69/211 (32%), Positives = 101/211 (47%), Gaps = 14/211 (6%)

Query: 324 NLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSL 383
           N +++   +  L+ +IPS I        L+L  N+LSS        LT L   YL  N L
Sbjct: 17  NKNSVDCSSKKLT-AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL 73

Query: 384 SGSIPSEI-GNLKSLSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLGSIPREI-G 440
             ++P+ I   LK+L  L +++NKL  ++P  +   L NLA L L  N L  S+P  +  
Sbjct: 74  Q-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQL-KSLPPRVFD 130

Query: 441 NLKSLFELQLGDNKLSNSISHSL-GNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLS 499
           +L  L  L LG N+L  S+   +   LT +  L LY+N L  V       L +L  L L 
Sbjct: 131 SLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189

Query: 500 DNQLQGSIPN--LRNLTNLIRLRLNRNHLTC 528
           +NQL+  +P     +L  L  L+L  N   C
Sbjct: 190 NNQLK-RVPEGAFDSLEKLKMLQLQENPWDC 219

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 92.3 bits (230), Expect = 7e-21
 Identities = 58/183 (31%), Positives = 86/183 (46%), Gaps = 14/183 (7%)

Query: 182 EALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSL-GNLTNLAILYLHNNSLS 240
           + L L  N+LS         L+ L  L L  N L+ ++P  +   L NL  L++ +N L 
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98

Query: 241 GSIPSEI-GNLKSLSSLALGNNKLCGSIP--LFLGNLTNLDTLYLRNNSFSSSIPSEI-G 296
            ++P  +   L +L+ L L  N+L  S+P  +F  +LT L  L L  N   S +P  +  
Sbjct: 99  -ALPIGVFDQLVNLAELRLDRNQL-KSLPPRVF-DSLTKLTYLSLGYNELQS-LPKGVFD 154

Query: 297 NLKSLSILELGENRLNGSIPLSL-GNLTNLDTLYLYTNSLSGSIPSEI-GNLKSLSGLEL 354
            L SL  L L  N+L   +P      LT L TL L  N L   +P     +L+ L  L+L
Sbjct: 155 KLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQL 212

Query: 355 ADN 357
            +N
Sbjct: 213 QEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 92.3 bits (230), Expect = 8e-21
 Identities = 54/183 (29%), Positives = 81/183 (44%), Gaps = 9/183 (4%)

Query: 371 TNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSN 429
            +     L  N LS         L  L  L L++NKL  ++P  +   L NL  L++  N
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95

Query: 430 TLLGSIPREI-GNLKSLFELQLGDNKLSNSISHSL-GNLTHMTLLALYDNALSGVIPEEL 487
             L ++P  +   L +L EL+L  N+L  S+   +  +LT +T L+L  N L  +     
Sbjct: 96  -KLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153

Query: 488 GNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDL 545
             L  L  L L +NQL+  +P      LT L  L+L+ N L      +F    KL  + L
Sbjct: 154 DKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212

Query: 546 SHN 548
             N
Sbjct: 213 QEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 87.3 bits (217), Expect = 4e-19
 Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 10/180 (5%)

Query: 111 YLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSG 169
            LDLQ N++  +       ++KL+ L L+ N    T+P  I   L  L+ L+++ N+   
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ- 98

Query: 170 RIPPQI-GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPPSL-GNL 226
            +P  +   L  +  L L +NQL   +P  V   L+ L  L+L  N L+ S+P  +   L
Sbjct: 99  ALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKL 156

Query: 227 TNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNN 285
           T+L  L L+NN L   +P      L  L +L L NN+L         +L  L  L L+ N
Sbjct: 157 TSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 85.0 bits (211), Expect = 2e-18
 Identities = 48/164 (29%), Positives = 70/164 (42%), Gaps = 10/164 (6%)

Query: 103 FSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLY 161
           F     L  L L  N++  +       +  L+ L ++ N     +P  +   L  L  L 
Sbjct: 57  FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELR 115

Query: 162 LSANQFSGRIPPQI-GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSI 219
           L  NQ    +PP++   L+ +  L L  N+L   +P  V   L+SL EL L +N LK  +
Sbjct: 116 LDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLK-RV 172

Query: 220 PPSL-GNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNN 261
           P      LT L  L L NN L   +P     +L+ L  L L  N
Sbjct: 173 PEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 83.5 bits (207), Expect = 9e-18
 Identities = 58/168 (34%), Positives = 81/168 (48%), Gaps = 9/168 (5%)

Query: 386 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKS 444
           +IPS I        LDL  NKLS     +   LT L +LYL+ N  L ++P  I   LK+
Sbjct: 30  AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKN 86

Query: 445 LFELQLGDNKLSNSISHSL-GNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQL 503
           L  L + DNKL  ++   +   L ++  L L  N L  + P    +L KLT L+L  N+L
Sbjct: 87  LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145

Query: 504 QGSIPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNN 549
           Q S+P      LT+L  LRL  N L      +F    +L  + L +N 
Sbjct: 146 Q-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 72.3 bits (178), Expect = 5e-14
 Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 11/175 (6%)

Query: 572 NNIIGSLPPEIGDS-SQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSE 629
           +N + SLP +     ++L ++ L+ N +   +P+ I  +L +L  L +  N+L   LP  
Sbjct: 46  SNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKL-QALPIG 103

Query: 630 L-GSLIQLEYLDLSSNRLSNSIPRSL-GNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSE 686
           +   L+ L  L L  N+L  S+P  +  +L KL YL+L  N+ +Q +P  + +KL  L E
Sbjct: 104 VFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKE 161

Query: 687 LDLSHNFLGKEIPSQIC-NMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYN 740
           L L +N L K +P      +  L+ L L +N L       F+ +  L  + +  N
Sbjct: 162 LRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 72.3 bits (178), Expect = 5e-14
 Identities = 64/218 (29%), Positives = 91/218 (41%), Gaps = 35/218 (16%)

Query: 432 LGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLV 491
           L +IP  I       +L L  NKLS+  S +   LT + LL L DN L  +       L 
Sbjct: 28  LTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK 85

Query: 492 KLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISES-FGIHPKLTFIDLSHN 548
            L  L ++DN+LQ ++P      L NL  LRL+RN L  ++    F    KLT++ L +N
Sbjct: 86  NLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYN 143

Query: 549 NFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS-SQLHVIDLSANHIIGKIPSEI- 606
                                     + SLP  + D  + L  + L  N  + ++P    
Sbjct: 144 E-------------------------LQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAF 177

Query: 607 GKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSN 644
            KL+ L  L L  NQL         SL +L+ L L  N
Sbjct: 178 DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 55/230 (23%), Positives = 82/230 (35%), Gaps = 61/230 (26%)

Query: 470 TLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLT 527
             L L  N LS +  +    L KL +L L+DN+LQ ++P    + L NL  L +  N L 
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98

Query: 528 CNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS-S 586
                                                            +LP  + D   
Sbjct: 99  -------------------------------------------------ALPIGVFDQLV 109

Query: 587 QLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSEL-GSLIQLEYLDLSSN 644
            L  + L  N +   +P  +   L+ L  L L  N+L   LP  +   L  L+ L L +N
Sbjct: 110 NLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNN 167

Query: 645 RLSNSIPRSL-GNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHN 692
           +L   +P      L +L  L L  NQ ++ +P    + L  L  L L  N
Sbjct: 168 QLK-RVPEGAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 66.5 bits (163), Expect = 5e-12
 Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 10/170 (5%)

Query: 577 SLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSEL-GSLIQ 635
           ++P  I   ++   +DL +N +         +L+ L  L L  N+L   LP+ +   L  
Sbjct: 30  AIPSNIPADTK--KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKN 86

Query: 636 LEYLDLSSNRLSNSIPRSL-GNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNF 693
           LE L ++ N+L  ++P  +   LV L  L L  NQ ++ +P ++ + L  L+ L L +N 
Sbjct: 87  LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNE 144

Query: 694 LGKEIPSQIC-NMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 742
           L + +P  +   + SL+ L L +N L       F+++  L  + +  N+L
Sbjct: 145 L-QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 44/176 (25%), Positives = 85/176 (48%), Gaps = 10/176 (5%)

Query: 572 NNIIGSLPPEIGD-SSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSEL 630
           N  +      +   ++  + +D S+  +   IPS I   +   KL L+ N+L        
Sbjct: 1   NEALCKKDGGVCSCNNNKNSVDCSSKKLTA-IPSNI--PADTKKLDLQSNKLSSLPSKAF 57

Query: 631 GSLIQLEYLDLSSNRLSNSIPRSL-GNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELD 688
             L +L  L L+ N+L  ++P  +   L  L  L ++ N+ +Q +PI + ++L++L+EL 
Sbjct: 58  HRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELR 115

Query: 689 LSHNFLGKEIPSQIC-NMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 743
           L  N L K +P ++  ++  L  L+L +N L       F+++  L  + +  N+L 
Sbjct: 116 LDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 91.5 bits (227), Expect = 3e-20
 Identities = 58/275 (21%), Positives = 102/275 (37%), Gaps = 23/275 (8%)

Query: 464 GNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP----NLRNLTNLIRL 519
           G  +   LL   D         ++   + L  LT+   ++   I      +  ++ L  L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 520 RLNRNHLTCNISESFGI--HPKLTFIDLSHNNFYGQISSDWG----KCPNLGTFDVSVNN 573
            L    +T            P L  ++L + ++  + +          P L    ++  +
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 574 IIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI----GKLSSLIKLILRRNQ---LFGQL 626
            +     ++     L  +DLS N  +G+          K  +L  L LR        G  
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 627 PSELGSLIQLEYLDLSSNRLSNSIPRSL-GNLVKLHYLNLSTNQFIQEIPIKLEKLIHLS 685
            +   + +QL+ LDLS N L ++          +L+ LNLS    ++++P  L     LS
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLPA--KLS 277

Query: 686 ELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSD 720
            LDLS+N L    PS    +  +  L+L  N   D
Sbjct: 278 VLDLSYNRL-DRNPS-PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 82.6 bits (204), Expect = 3e-17
 Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 19/245 (7%)

Query: 108 HLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQF 167
            L     ++         ++  IS L+ L L +   +GT PP +   +      L+    
Sbjct: 72  RLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV 131

Query: 168 SGRIPP------QIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSI-- 219
           S           Q      ++ L + +         +V    +L+ L L+ N   G    
Sbjct: 132 SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191

Query: 220 -----PPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIP-LFLGN 273
                P     L  LA+      + SG   +       L  L L +N L  +        
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 274 LTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTN 333
            + L++L L        +P  +     LS+L+L  NRL+   P     L  +  L L  N
Sbjct: 252 PSQLNSLNLSFTGL-KQVPKGL--PAKLSVLDLSYNRLD-RNPSPDE-LPQVGNLSLKGN 306

Query: 334 SLSGS 338
               S
Sbjct: 307 PFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.5 bits (201), Expect = 8e-17
 Identities = 51/275 (18%), Positives = 86/275 (31%), Gaps = 22/275 (8%)

Query: 224 GNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIP---LFLGNLTNLDTL 280
           G  +   +L   +        ++I    SL  L +   ++   I    L +  ++ L  L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 281 YLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIP------LSLGNLTNLDTLYLYTNS 334
            L N   + + P  +       +  L    ++ +        L       L  L +    
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 335 LSGSIPSEIGNLKSLSGLELADNELSSSI-------PHYLGNLTNLAAFYLYKNSLSGSI 387
                  ++    +LS L+L+DN             P     L  LA       + SG  
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 388 PSEIGNLKSLSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLGSIPREIGNLKSLF 446
            +       L  LDLS N L  +         + L  L L     L  +P+ +     L 
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGL--PAKLS 277

Query: 447 ELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSG 481
            L L  N+L    + S   L  +  L+L  N    
Sbjct: 278 VLDLSYNRLDR--NPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.0 bits (192), Expect = 1e-15
 Identities = 52/314 (16%), Positives = 95/314 (30%), Gaps = 48/314 (15%)

Query: 355 ADNELSSSIPHYLGNLTNLAAFYLYKN-SLSGSIPSEIGNLKSLSNLDLSENKLSGSIPH 413
           A N L ++     G   +L       +        ++I    SL  L +   ++   I  
Sbjct: 27  AFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILF 86

Query: 414 S---LGNLTNLAILYLHSNTLLGSIPREIGNL--KSLFELQLGDNKLSNSISHSLG---- 464
               +  ++ L  L L +  + G+ P  +       L  L L +   +   +        
Sbjct: 87  GALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQW 146

Query: 465 NLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN-----LRNLTNLIRL 519
               + +L++          E++     L+ L LSDN   G               L  L
Sbjct: 147 LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206

Query: 520 RLNRNHLTC---NISESFGIHPKLTFIDLSHNNFYGQI-SSDWGKCPNLGTFDVSVNNII 575
            L    +       S       +L  +DLSHN+      +        L + ++S    +
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS-FTGL 265

Query: 576 GSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQ 635
             +P  +   ++L V+DLS N +                                  L Q
Sbjct: 266 KQVPKGL--PAKLSVLDLSYNRL--------------------------DRNPSPDELPQ 297

Query: 636 LEYLDLSSNRLSNS 649
           +  L L  N   +S
Sbjct: 298 VGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 77.2 bits (190), Expect = 2e-15
 Identities = 58/297 (19%), Positives = 84/297 (28%), Gaps = 40/297 (13%)

Query: 128 GNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHL---SYIEAL 184
           G  S    L              I     LK L + A +   RI      +   S ++ L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 185 HLFKNQLSGPIPHEVGGL--SSLNELALTSNFLKG--SIPPSLGNL--TNLAILYLHNNS 238
            L   +++G  P  +       LN L L +       +    L       L +L +    
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 239 LSGSIPSEIGNLKSLSSLALGNNKLCGSIPL----FLGNLTNLDTLYLRNNSFSSSIPSE 294
                  ++    +LS+L L +N   G   L           L  L LRN    +     
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET----- 215

Query: 295 IGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI-GNLKSLSGLE 353
                            +G           L  L L  NSL  +  +        L+ L 
Sbjct: 216 ----------------PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 354 LADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGS 410
           L+   L          L+ L    L  N L    PS    L  + NL L  N    S
Sbjct: 260 LSFTGLKQVPKGLPAKLSVL---DLSYNRLD-RNPS-PDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.4 bits (180), Expect = 4e-14
 Identities = 50/266 (18%), Positives = 83/266 (31%), Gaps = 25/266 (9%)

Query: 496 LTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQIS 555
           L  +D +L G   +L  L   +    +    T  I         L  + +       +I 
Sbjct: 31  LGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSL-----SLKRLTVRAARIPSRIL 85

Query: 556 SDWGK---CPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHI-IGKIPSEIGKLS- 610
               +      L    +    + G+ PP + +++   +  L+  ++      + + +L  
Sbjct: 86  FGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQ 145

Query: 611 ----SLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSI-------PRSLGNLVK 659
                L  L + +         ++     L  LDLS N             P     L  
Sbjct: 146 WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQV 205

Query: 660 LHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQIC-NMRSLEMLNLSHNNL 718
           L   N                 + L  LDLSHN L     +  C     L  LNLS   L
Sbjct: 206 LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265

Query: 719 SDFIPRCFEEMNGLLYIDISYNELHG 744
              +P+       L  +D+SYN L  
Sbjct: 266 KQ-VPKGLPA--KLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 72.2 bits (177), Expect = 1e-13
 Identities = 41/208 (19%), Positives = 56/208 (26%), Gaps = 31/208 (14%)

Query: 88  NLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTI 147
           N++       L +      P L  L +           Q+     L  LDLS N   G  
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189

Query: 148 P----PQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLS 203
                        L+ L L                             SG          
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGM---------------------ETPSGVCSALAAARV 228

Query: 204 SLNELALTSNFLKGSIPPSL-GNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNK 262
            L  L L+ N L+ +         + L  L L    L   +P  +     LS L L  N+
Sbjct: 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNR 285

Query: 263 LCGSIPLFLGNLTNLDTLYLRNNSFSSS 290
           L    P     L  +  L L+ N F  S
Sbjct: 286 L-DRNPSPDE-LPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.1 bits (148), Expect = 4e-10
 Identities = 33/217 (15%), Positives = 61/217 (28%), Gaps = 23/217 (10%)

Query: 540 LTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHII 599
           L  +D   +               L      + + I      +   S L  + L    + 
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 600 GKIPSEIGKLS--SLIKLILRRNQL--FGQLPSELGSLIQ--LEYLDLSSNRLSNSIPRS 653
           G  P  + + +   L  L LR           +EL   ++  L+ L ++     N     
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168

Query: 654 LGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNL 713
           +     L  L+LS N  + E  +                      P +   ++ L + N 
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISAL-----------------CPLKFPTLQVLALRNA 211

Query: 714 SHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNST 750
                S            L  +D+S+N L       +
Sbjct: 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 10/165 (6%)

Query: 607 GKLSSLIKLILRRNQLFGQLP-SELGSLIQLEYLDLSSNRLSNSIPRS---LGNLVKLHY 662
           G   SL  L+ R +        +++   + L+ L + + R+ + I      +  +  L  
Sbjct: 40  GGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQE 99

Query: 663 LNLSTNQFIQEIPIKLEKLIH--LSELDLSHNFLGKEIPS----QICNMRSLEMLNLSHN 716
           L L   +     P  L +     L+ L+L +             Q      L++L+++  
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159

Query: 717 NLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQ 761
           +  +F          L  +D+S N   G     +A        LQ
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ 204

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 93.9 bits (234), Expect = 3e-20
 Identities = 87/439 (19%), Positives = 144/439 (32%), Gaps = 65/439 (14%)

Query: 347 KSLSGLELADNELS-SSIPHYLGNLTNLAAFYLYKNSLS----GSIPSEIGNLKSLSNLD 401
             +  L++   ELS +     L  L       L    L+      I S +    +L+ L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 402 LSENKLSGSIPHSLGNL-----TNLAILYLHSNTL----LGSIPREIGNLKSLFELQLGD 452
           L  N+L     H +          +  L L +  L     G +   +  L +L EL L D
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 453 NKLSNSISHSLG-----NLTHMTLLALYDNALSGVIPEELGNLVK----LTMLTLSDNQL 503
           N L ++    L          +  L L   +LS    E L ++++       LT+S+N +
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 504 QGS-IPNL-----RNLTNLIRLRLNRNHLT----CNISESFGIHPKLTFIDLSHNNFYG- 552
             + +  L      +   L  L+L    +T     ++         L  + L  N     
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242

Query: 553 --QISSDWGKCPN--LGTFDVSVNNI----IGSLPPEIGDSSQLHVIDLSANHIIGKIPS 604
                      P+  L T  +    I     G L   +     L  + L+ N +  +   
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302

Query: 605 EIGKL-----SSLIKLILRRNQLFGQLPSELGSLIQ----LEYLDLSSNRLSNSIPRSLG 655
            + +        L  L ++         S   S++     L  L +S+NRL ++  R L 
Sbjct: 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 362

Query: 656 -----NLVKLHYLNLSTNQF----IQEIPIKLEKLIHLSELDLSHNFLGKEIPSQIC--- 703
                    L  L L+           +   L     L ELDLS+N LG     Q+    
Sbjct: 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 422

Query: 704 --NMRSLEMLNLSHNNLSD 720
                 LE L L     S+
Sbjct: 423 RQPGCLLEQLVLYDIYWSE 441

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 80.0 bits (198), Expect = 8e-16
 Identities = 66/356 (18%), Positives = 106/356 (29%), Gaps = 61/356 (17%)

Query: 443 KSLFELQLGDNKLSNS-ISHSLGNLTHMTLLALYDNALS----GVIPEELGNLVKLTMLT 497
             +  L +   +LS++  +  L  L    ++ L D  L+      I   L     L  L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 498 LSDNQLQGS-----IPNLRNL-TNLIRLRLNRNHLT----CNISESFGIHPKLTFIDLSH 547
           L  N+L        +  L+     + +L L    LT      +S +    P L  + LS 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 548 NNFYGQISSDWG----------KCPNLGTFDVSVNNI----IGSLPPEIGDSSQLHVIDL 593
           N        D G              L    +   ++       L   +        + +
Sbjct: 123 NLL-----GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177

Query: 594 SANHIIGKIPSEIGKL-----SSLIKLILRRNQL----FGQLPSELGSLIQLEYLDLSSN 644
           S N I       + +        L  L L    +       L   + S   L  L L SN
Sbjct: 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237

Query: 645 RLSNSIPRSLGNLVK-----LHYLNLSTNQF----IQEIPIKLEKLIHLSELDLSHNFLG 695
           +L +     L   +      L  L +           ++   L     L EL L+ N LG
Sbjct: 238 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297

Query: 696 KEIPSQICNM-----RSLEMLNLSHNNLSD----FIPRCFEEMNGLLYIDISYNEL 742
            E    +C         LE L +   + +            +   LL + IS N L
Sbjct: 298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 79.2 bits (196), Expect = 1e-15
 Identities = 79/425 (18%), Positives = 146/425 (34%), Gaps = 74/425 (17%)

Query: 181 IEALHLFKNQLSGP-IPHEVGGLSSLNELALTSNFLK----GSIPPSLGNLTNLAILYLH 235
           I++L +   +LS       +  L     + L    L       I  +L     LA L L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 236 NNSLSGSIPSEIGN-LKS----LSSLALGNNKL----CGSIPLFLGNLTNLDTLYLRNNS 286
           +N L       +   L++    +  L+L N  L    CG +   L  L  L  L+L +N 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 287 FSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLS----GSIPSE 342
              +       L+ L    L                  L+ L L   SLS      + S 
Sbjct: 125 LGDA------GLQLLCEGLLDPQ-------------CRLEKLQLEYCSLSAASCEPLASV 165

Query: 343 IGNLKSLSGLELADNELSSSIPHYLG-----NLTNLAAFYLYKNSLS----GSIPSEIGN 393
           +        L +++N+++ +    L      +   L A  L    ++      +   + +
Sbjct: 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS 225

Query: 394 LKSLSNLDLSENKLSGS-----IPHSLGNLTNLAILYLHSNTL----LGSIPREIGNLKS 444
             SL  L L  NKL         P  L   + L  L++    +     G + R +   +S
Sbjct: 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES 285

Query: 445 LFELQLGDNKLSNSISHSLGNL-----THMTLLALYDNALSGVIPEELGNLVK----LTM 495
           L EL L  N+L +  +  L          +  L +   + +        +++     L  
Sbjct: 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345

Query: 496 LTLSDNQLQGSIPNL------RNLTNLIRLRLNRNHLT----CNISESFGIHPKLTFIDL 545
           L +S+N+L+ +          +  + L  L L    ++     +++ +   +  L  +DL
Sbjct: 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405

Query: 546 SHNNF 550
           S+N  
Sbjct: 406 SNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 77.7 bits (192), Expect = 5e-15
 Identities = 84/475 (17%), Positives = 148/475 (31%), Gaps = 93/475 (19%)

Query: 131 SKLKYLDLSSNSFSGT-IPPQIGNLSMLKFLYLSANQFSGR----IPPQIGHLSYIEALH 185
             ++ LD+     S       +  L   + + L     +      I   +     +  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 186 LFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLS----G 241
           L  N+L         G+  + +   T +               +  L L N  L+    G
Sbjct: 63  LRSNELGDV------GVHCVLQGLQTPS-------------CKIQKLSLQNCCLTGAGCG 103

Query: 242 SIPSEIGNLKSLSSLALGNNKLCGS-----IPLFLGNLTNLDTLYLRNNSFSS----SIP 292
            + S +  L +L  L L +N L  +         L     L+ L L   S S+     + 
Sbjct: 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163

Query: 293 SEIGNLKSLSILELGENRLN--GSIPLSLG---NLTNLDTLYLYTNSLS----GSIPSEI 343
           S +        L +  N +N  G   L  G   +   L+ L L +  ++      +   +
Sbjct: 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223

Query: 344 GNLKSLSGLELADNELSSS-----IPHYLGNLTNLAAFYLYKNSLS----GSIPSEIGNL 394
            +  SL  L L  N+L         P  L   + L   ++++  ++    G +   +   
Sbjct: 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 283

Query: 395 KSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNK 454
           +SL  L L+ N+L             L    L                  L  L +    
Sbjct: 284 ESLKELSLAGNELGDE------GARLLCETLLEPGC-------------QLESLWVKSCS 324

Query: 455 LSN----SISHSLGNLTHMTLLALYDNAL--SGVIP--EELG-NLVKLTMLTLSDNQLQG 505
            +       S  L     +  L + +N L  +GV    + LG     L +L L+D  +  
Sbjct: 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384

Query: 506 S-----IPNLRNLTNLIRLRLNRNHLT----CNISESFGI-HPKLTFIDLSHNNF 550
           S        L    +L  L L+ N L       + ES       L  + L    +
Sbjct: 385 SSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 66.5 bits (163), Expect = 2e-11
 Identities = 82/416 (19%), Positives = 147/416 (35%), Gaps = 62/416 (14%)

Query: 78  CNHVGRVNSINLTNVGLKGT-LHDFS--FSSFPHLAYLDLQVNQI----FGIIPPQIGNI 130
              + +   + L + GL      D S      P LA L+L+ N++       +   +   
Sbjct: 24  LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83

Query: 131 S-KLKYLDLSSNSFSGT----IPPQIGNLSMLKFLYLSANQFSGRIPPQIGHL-----SY 180
           S K++ L L +   +G     +   +  L  L+ L+LS N         +          
Sbjct: 84  SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR 143

Query: 181 IEALHLFKNQLS----GPIPHEVGGLSSLNELALTSNFLKGS----IPPSLGNLT-NLAI 231
           +E L L    LS     P+   +       EL +++N +  +    +   L +    L  
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA 203

Query: 232 LYLHNNSLS----GSIPSEIGNLKSLSSLALGNNKLCGS-----IPLFLGNLTNLDTLYL 282
           L L +  ++      +   + +  SL  LALG+NKL         P  L   + L TL++
Sbjct: 204 LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263

Query: 283 RNNSFS----SSIPSEIGNLKSLSILELGENRL--NGSIPLSLG---NLTNLDTLYLYTN 333
                +      +   +   +SL  L L  N L   G+  L          L++L++ + 
Sbjct: 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323

Query: 334 SLSG----SIPSEIGNLKSLSGLELADNELSSSIPHYLG-----NLTNLAAFYLYKNSLS 384
           S +        S +   + L  L++++N L  +    L        + L   +L    +S
Sbjct: 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383

Query: 385 ----GSIPSEIGNLKSLSNLDLSENKLSGSIPHSLG-----NLTNLAILYLHSNTL 431
                S+ + +    SL  LDLS N L  +    L          L  L L+    
Sbjct: 384 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 61.1 bits (149), Expect = 9e-10
 Identities = 50/280 (17%), Positives = 86/280 (30%), Gaps = 73/280 (26%)

Query: 493 LTMLTLSDNQL--QGSIPNLRNLTNLIRLRLNRNHLT----CNISESFGIHPKLTFIDLS 546
           +  L +   +L        L  L     +RL+   LT     +IS +  ++P L  ++L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 547 HNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVID-LSANHIIGKIPSE 605
            N                                 +GD     V+  L            
Sbjct: 65  SNE--------------------------------LGDVGVHCVLQGLQTPS-------- 84

Query: 606 IGKLSSLIKLILRRNQL----FGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLV--- 658
                 + KL L+   L     G L S L +L  L+ L LS N L ++  + L   +   
Sbjct: 85  ----CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDP 140

Query: 659 --KLHYLNLSTNQF----IQEIPIKLEKLIHLSELDLSHNFLGKEIPSQIC-----NMRS 707
             +L  L L          + +   L       EL +S+N + +     +C     +   
Sbjct: 141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ 200

Query: 708 LEMLNLSHNNLSD----FIPRCFEEMNGLLYIDISYNELH 743
           LE L L    ++      +         L  + +  N+L 
Sbjct: 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 60/337 (17%), Positives = 115/337 (34%), Gaps = 60/337 (17%)

Query: 88  NLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQI----FGIIPPQIGNISKLKYLDLSSNSF 143
            L + GL+  L +        L  L L+   +       +   +      K L +S+N  
Sbjct: 124 LLGDAGLQ-LLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 144 SGTIPPQIG-----NLSMLKFLYLSANQFSGR----IPPQIGHLSYIEALHLFKNQLSGP 194
           +      +      +   L+ L L +   +      +   +   + +  L L  N+L   
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD- 241

Query: 195 IPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLS----GSIPSEIGNL 250
                 G++ L    L  +             + L  L++    ++    G +   +   
Sbjct: 242 -----VGMAELCPGLLHPS-------------SRLRTLWIWECGITAKGCGDLCRVLRAK 283

Query: 251 KSLSSLALGNNKLCGS-----IPLFLGNLTNLDTLYLRNNSFSS----SIPSEIGNLKSL 301
           +SL  L+L  N+L            L     L++L++++ SF++       S +   + L
Sbjct: 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343

Query: 302 SILELGENRL--NGSIPLSLG---NLTNLDTLYLYTNSLS----GSIPSEIGNLKSLSGL 352
             L++  NRL   G   L  G     + L  L+L    +S     S+ + +    SL  L
Sbjct: 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 403

Query: 353 ELADNELSSSIPHYLG-----NLTNLAAFYLYKNSLS 384
           +L++N L  +    L          L    LY    S
Sbjct: 404 DLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 87.4 bits (217), Expect = 3e-19
 Identities = 50/234 (21%), Positives = 80/234 (34%), Gaps = 17/234 (7%)

Query: 271 LGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYL 330
              L N     L   S +         L  +       + +  S+   +   TNL  L+L
Sbjct: 15  DPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHL 70

Query: 331 YTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSE 390
             N +S  + S + +L  L  L +  N L +        L+ L   +L  N L       
Sbjct: 71  SHNQIS-DL-SPLKDLTKLEELSVNRNRLKNLNGIPSACLSRL---FLDNNELRD--TDS 123

Query: 391 IGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQL 450
           + +LK+L  L +  NKL  SI   LG L+ L +L LH N +  +    +  LK +  + L
Sbjct: 124 LIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEI--TNTGGLTRLKKVNWIDL 179

Query: 451 GDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ 504
              K  N        L     +   D     + P  + N        +      
Sbjct: 180 TGQKCVNEPVKYQPELYITNTVKDPDGRW--ISPYYISNGGSYVDGCVLWELPV 231

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 84.3 bits (209), Expect = 4e-18
 Identities = 50/236 (21%), Positives = 87/236 (36%), Gaps = 17/236 (7%)

Query: 223 LGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYL 282
              L N     L   S++         L  + +    N+ +  S+   +   TNL  L+L
Sbjct: 15  DPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHL 70

Query: 283 RNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSE 342
            +N  S   P  + +L  L  L +  NRL     L+      L  L+L  N L       
Sbjct: 71  SHNQISDLSP--LKDLTKLEELSVNRNRLKN---LNGIPSACLSRLFLDNNELRD--TDS 123

Query: 343 IGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDL 402
           + +LK+L  L + +N+L S +   LG L+ L    L+ N ++ +    +  LK ++ +DL
Sbjct: 124 LIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEIT-NT-GGLTRLKKVNWIDL 179

Query: 403 SENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNS 458
           +  K           L     +       +   P  I N  S  +  +       +
Sbjct: 180 TGQKCVNEPVKYQPELYITNTVKDPDGRWIS--PYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 77.4 bits (191), Expect = 8e-16
 Identities = 47/239 (19%), Positives = 89/239 (37%), Gaps = 22/239 (9%)

Query: 485 EELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFID 544
                L       L    +   + + + L+ +     + +++  ++         L  + 
Sbjct: 13  FPDPGLANAVKQNLGKQSVT-DLVSQKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELH 69

Query: 545 LSHNNFYGQIS--SDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKI 602
           LSHN    QIS  S       L    V+ N +          S+ L  + L  N +  + 
Sbjct: 70  LSHN----QISDLSPLKDLTKLEELSVNRNRLKN---LNGIPSACLSRLFLDNNEL--RD 120

Query: 603 PSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHY 662
              +  L +L  L +R N+L  +    LG L +LE LDL  N ++N+    L  L K+++
Sbjct: 121 TDSLIHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNW 176

Query: 663 LNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEI-PSQICNMRSLEMLNLSHNNLSD 720
           ++L+  + + E      +L   + +    +  G+ I P  I N  S     +       
Sbjct: 177 IDLTGQKCVNEPVKYQPELYITNTV---KDPDGRWISPYYISNGGSYVDGCVLWELPVY 232

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 47/227 (20%), Positives = 91/227 (40%), Gaps = 16/227 (7%)

Query: 101 FSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFL 160
           F      +    +L    +  ++      +S ++  +  +++   ++   +   + LK L
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKEL 68

Query: 161 YLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIP 220
           +LS NQ S  + P +  L+ +E L + +N+L           + L+ L L +N L     
Sbjct: 69  HLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKNL---NGIPSACLSRLFLDNNEL--RDT 121

Query: 221 PSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTL 280
            SL +L NL IL + NN L  SI   +G L  L  L L  N++  +    L  L  ++ +
Sbjct: 122 DSLIHLKNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEIT-NTG-GLTRLKKVNWI 177

Query: 281 YLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLS-LGNLTNLD 326
            L      +        L   + ++  + R      +S  G+  +  
Sbjct: 178 DLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGC 224

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 34/233 (14%), Positives = 83/233 (35%), Gaps = 18/233 (7%)

Query: 463 LGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLN 522
              L +     L   +++ ++      L  +      ++ +Q S+  ++  TNL  L L+
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLS 71

Query: 523 RNHLTCNISESFGIHPKLTFIDLSHNNFYGQISS-DWGKCPNLGTFDVSVNNIIGSLPPE 581
            N ++ ++        KL  + ++ N    ++ + +      L    +  N +       
Sbjct: 72  HNQIS-DL-SPLKDLTKLEELSVNRN----RLKNLNGIPSACLSRLFLDNNEL--RDTDS 123

Query: 582 IGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDL 641
           +     L ++ +  N +  K    +G LS L  L L  N++       L  L ++ ++DL
Sbjct: 124 LIHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEI--TNTGGLTRLKKVNWIDL 179

Query: 642 SSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFL 694
           +  +  N   +    L   + +     ++I   P  +       +  +     
Sbjct: 180 TGQKCVNEPVKYQPELYITNTVKDPDGRWIS--PYYISNGGSYVDGCVLWELP 230

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 75.1 bits (185), Expect = 6e-15
 Identities = 45/222 (20%), Positives = 81/222 (36%), Gaps = 17/222 (7%)

Query: 282 LRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPS 341
            R    +   P     L +     LG+  +   +      L+ +       +++  S+ +
Sbjct: 4   QRPTPINQVFP--DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQ-SL-A 57

Query: 342 EIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLD 401
            +    +L  L L+ N++S   P  L +LT L    + +N L  ++         LS L 
Sbjct: 58  GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK-NL--NGIPSACLSRLF 112

Query: 402 LSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISH 461
           L  N+L      SL +L NL IL + +N L       +G L  L  L L  N+++ +   
Sbjct: 113 LDNNELRD--TDSLIHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEIT-NTG- 166

Query: 462 SLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQL 503
            L  L  +  + L          +    L     +   D + 
Sbjct: 167 GLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 72.0 bits (177), Expect = 6e-14
 Identities = 38/189 (20%), Positives = 77/189 (40%), Gaps = 18/189 (9%)

Query: 389 SEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFEL 448
                L +    +L +  ++  +      L+ +      ++  + S+   +    +L EL
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKEL 68

Query: 449 QLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP 508
            L  N++S+ +S  L +LT +  L++  N L  +          L+ L L +N+L+    
Sbjct: 69  HLSHNQISD-LS-PLKDLTKLEELSVNRNRLKNL---NGIPSACLSRLFLDNNELR-DTD 122

Query: 509 NLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQIS--SDWGKCPNLGT 566
           +L +L NL  L +  N L  +I    G   KL  +DL  N    +I+      +   +  
Sbjct: 123 SLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGN----EITNTGGLTRLKKVNW 176

Query: 567 FDVSVNNII 575
            D++    +
Sbjct: 177 IDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 46/211 (21%), Positives = 83/211 (39%), Gaps = 15/211 (7%)

Query: 102 SFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLY 161
           S      +   +   + I  +    +   + LK L LS N  S  + P + +L+ L+ L 
Sbjct: 36  SQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELS 91

Query: 162 LSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPP 221
           ++ N+    +   I     +  L L  N+L       +  L +L  L++ +N LK SI  
Sbjct: 92  VNRNRLK-NLNG-IPSAC-LSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLK-SIVM 145

Query: 222 SLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLY 281
            LG L+ L +L LH N ++ +    +  LK ++ + L   K       +   L   +T+ 
Sbjct: 146 -LGFLSKLEVLDLHGNEIT-NT-GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVK 202

Query: 282 LRNNSFSSSIPSEIGNLKSLSILELGENRLN 312
             +  + S  P  I N  S     +      
Sbjct: 203 DPDGRWIS--PYYISNGGSYVDGCVLWELPV 231

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 68.5 bits (168), Expect = 9e-13
 Identities = 46/230 (20%), Positives = 87/230 (37%), Gaps = 23/230 (10%)

Query: 496 LTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQIS 555
                  +   +     L N ++  L +  +T     S      +   +  ++N   Q  
Sbjct: 2   SIQRPTPIN-QVFPDPGLANAVKQNLGKQSVT--DLVSQKELSGVQNFNGDNSNI--QSL 56

Query: 556 SDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLS--SLI 613
           +      NL    +S +N I  L P + D ++L  + ++ N +       +  +    L 
Sbjct: 57  AGMQFFTNLKELHLS-HNQISDLSP-LKDLTKLEELSVNRNRL-----KNLNGIPSACLS 109

Query: 614 KLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQE 673
           +L L  N+L  +    L  L  LE L + +N+L + +   LG L KL  L+L  N+ I  
Sbjct: 110 RLFLDNNEL--RDTDSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNE-ITN 164

Query: 674 IPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP 723
               L +L  ++ +DL+      E    +     L + N   +    +I 
Sbjct: 165 TG-GLTRLKKVNWIDLTGQKCVNE---PVKYQPELYITNTVKDPDGRWIS 210

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 39/198 (19%), Positives = 82/198 (41%), Gaps = 16/198 (8%)

Query: 545 LSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPS 604
           +       Q+  D     N    ++   ++  +      + S +   +   ++I  +  +
Sbjct: 3   IQRPTPINQVFPD-PGLANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNI--QSLA 57

Query: 605 EIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLN 664
            +   ++L +L L  NQ+     S L  L +LE L ++ NRL N    +      L  L 
Sbjct: 58  GMQFFTNLKELHLSHNQI--SDLSPLKDLTKLEELSVNRNRLKNL---NGIPSACLSRLF 112

Query: 665 LSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPR 724
           L  N+ +++    L  L +L  L + +N L K I   +  +  LE+L+L  N +++    
Sbjct: 113 LDNNE-LRDTD-SLIHLKNLEILSIRNNKL-KSI-VMLGFLSKLEVLDLHGNEITNTGG- 167

Query: 725 CFEEMNGLLYIDISYNEL 742
               +  + +ID++  + 
Sbjct: 168 -LTRLKKVNWIDLTGQKC 184

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 89.5 bits (222), Expect = 3e-19
 Identities = 47/172 (27%), Positives = 68/172 (39%), Gaps = 12/172 (6%)

Query: 386 SIPSEIGNLKSLSNLDLSENKLSGSIP--HSLGNLTNLAILYLHSNTLLGSIPREI-GNL 442
           ++P  + +    + LDLS N LS  +    +   LTNL  L L  N L   I  E    +
Sbjct: 32  NVPQSLPS--YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPV 87

Query: 443 KSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQ 502
            +L  L L  N L         +L  + +L LY+N +  V      ++ +L  L LS NQ
Sbjct: 88  PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147

Query: 503 LQ----GSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLS-HNN 549
           +       I +   L  L+ L L+ N L           P      L  HNN
Sbjct: 148 ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 84.5 bits (209), Expect = 1e-17
 Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 17/176 (9%)

Query: 577 SLPPEIGDSSQLHVIDLSANHIIGKIPSEI--GKLSSLIKLILRRNQLFGQLPSE-LGSL 633
           ++P  +   S   ++DLS N++  ++ +E    +L++L  L+L  N L   + SE    +
Sbjct: 32  NVPQSL--PSYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPV 87

Query: 634 IQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIK-LEKLIHLSELDLSHN 692
             L YLDLSSN L         +L  L  L L  N  I  +     E +  L +L LS N
Sbjct: 88  PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN 146

Query: 693 FLGKEIPSQI----CNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHG 744
            +    P ++      +  L +L+LS N L        +++   +   +    LH 
Sbjct: 147 QI-SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY---LHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 79.9 bits (197), Expect = 5e-16
 Identities = 41/178 (23%), Positives = 69/178 (38%), Gaps = 17/178 (9%)

Query: 106 FPHLAYLDLQVNQIFGIIPPQI-GNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLS 163
             + A LDL  N +  +        ++ L  L LS N  +  I  +    +  L++L LS
Sbjct: 38  PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96

Query: 164 ANQFSGRIPPQI-GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPP 221
           +N     +   +   L  +E L L+ N +   +       ++ L +L L+ N +    P 
Sbjct: 97  SNHLH-TLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQIS-RFPV 153

Query: 222 ----SLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLS--SLALGNNKL---CGSIPLF 270
                   L  L +L L +N L     +++  L +     L L NN L   C    LF
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLF 211

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 79.5 bits (196), Expect = 5e-16
 Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 16/175 (9%)

Query: 289 SSIPSEIGNLKSLSILELGENRLNGSIP--LSLGNLTNLDTLYLYTNSLSGSIPSEI-GN 345
            ++P  + +    ++L+L  N L   +    +   LTNL +L L  N L+  I SE    
Sbjct: 31  PNVPQSLPS--YTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVP 86

Query: 346 LKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSE 404
           + +L  L+L+ N L +       +L  L    LY N +   +      ++  L  L LS+
Sbjct: 87  VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQ 145

Query: 405 NKLSGSIP----HSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFE--LQLGDN 453
           N++S   P         L  L +L L SN L      ++  L +  +  L L +N
Sbjct: 146 NQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 76.0 bits (187), Expect = 8e-15
 Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 16/168 (9%)

Query: 179 SYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPP-SLGNLTNLAILYLHN 236
           SY   L L  N LS          L++L+ L L+ N L   I   +   + NL  L L +
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 237 NSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIP--LFLGNLTNLDTLYLRNNSFSSSIPS 293
           N L  ++   +  +L++L  L L NN +   +    F  ++  L  LYL  N   S  P 
Sbjct: 98  NHLH-TLDEFLFSDLQALEVLLLYNNHI-VVVDRNAF-EDMAQLQKLYLSQNQI-SRFPV 153

Query: 294 EI----GNLKSLSILELGENRLNGSIPLSLGNLTNL--DTLYLYTNSL 335
           E+      L  L +L+L  N+L       L  L     + LYL+ N L
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.9 bits (145), Expect = 2e-09
 Identities = 36/159 (22%), Positives = 69/159 (43%), Gaps = 16/159 (10%)

Query: 63  NNATKISPCAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGI 122
           NN +++            +  ++S+ L++  L   +   +F   P+L YLDL  N +   
Sbjct: 49  NNLSRLRAEWTP----TRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHL-HT 102

Query: 123 IPPQI-GNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGRIPPQI----G 176
           +   +  ++  L+ L L +N     +      +++ L+ LYLS NQ S R P ++     
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGN 160

Query: 177 HLSYIEALHLFKNQLSGPIPHEVGGLSSLNE--LALTSN 213
            L  +  L L  N+L      ++  L +  +  L L +N
Sbjct: 161 KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 83.9 bits (208), Expect = 4e-18
 Identities = 45/208 (21%), Positives = 74/208 (35%), Gaps = 10/208 (4%)

Query: 107 PHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSAN 165
           P    L L    +  I      N+  +  + +S +     +      NLS +  + +   
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 166 QFSGRIPPQI-GHLSYIEALHLFKNQLSG-PIPHEVGGLSSLNELALTSNFLKGSIPP-S 222
           +    I P     L  ++ L +F   L   P   +V        L +T N    SIP  +
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 223 LGNLTN-LAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIP--LFLGNLTNLDT 279
              L N    L L+NN  + S+     N   L ++ L  NK    I    F G  +    
Sbjct: 151 FQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209

Query: 280 LYLRNNSFSSSIPSEI-GNLKSLSILEL 306
           L +   S  +++PS+   +LK L     
Sbjct: 210 LDVSQTSV-TALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 81.6 bits (202), Expect = 2e-17
 Identities = 48/214 (22%), Positives = 79/214 (36%), Gaps = 16/214 (7%)

Query: 226 LTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIP--LFLGNLTNLDTLYL 282
             +   L L    L  +IPS    NL ++S + +  +     +    F   L+ +  + +
Sbjct: 30  PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYN-LSKVTHIEI 87

Query: 283 RNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIP--LSLGNLTNLDTLYLYTNSLSGSI 339
           RN    + I  +    L  L  L +    L    P    + +      L +  N    SI
Sbjct: 88  RNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSI 146

Query: 340 PSEI--GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI--GNLK 395
           P     G       L+L +N  +S +  Y  N T L A YL KN     I  +   G   
Sbjct: 147 PVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYS 205

Query: 396 SLSNLDLSENKLSGSIPH-SLGNLTNLAILYLHS 428
             S LD+S+  ++ ++P   L +L  L      +
Sbjct: 206 GPSLLDVSQTSVT-ALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 81.2 bits (201), Expect = 3e-17
 Identities = 37/210 (17%), Positives = 67/210 (31%), Gaps = 10/210 (4%)

Query: 274 LTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPL-SLGNLTNLDTLYLYT 332
             +  TL L      +       NL ++S + +  +     +   S  NL+ +  + +  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 333 NSLSGSIPSEI-GNLKSLSGLELADNELSSSIPHY--LGNLTNLAAFYLYKNSLSGSIPS 389
                 I  +    L  L  L + +  L    P    + +        +  N    SIP 
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 390 EI--GNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI--GNLKSL 445
               G       L L  N  + S+     N T L  +YL+ N  L  I ++   G     
Sbjct: 149 NAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP 207

Query: 446 FELQLGDNKLSNSISHSLGNLTHMTLLALY 475
             L +    ++   S  L +L  +     +
Sbjct: 208 SLLDVSQTSVTALPSKGLEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 42/245 (17%), Positives = 84/245 (34%), Gaps = 34/245 (13%)

Query: 428 SNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEEL 487
           +   +  IP       S   L+L +  L    SH+  NL +++ + +  +     +    
Sbjct: 19  TCKDIQRIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS 75

Query: 488 -GNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFID 544
             NL K+T + + + +    I    L+ L  L  L +    L       F   P LT + 
Sbjct: 76  FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-----MF---PDLTKVY 127

Query: 545 LSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEI--GDSSQLHVIDLSANHIIGKI 602
            +   F                 +++ N  + S+P     G  ++   + L  N     +
Sbjct: 128 STDIFF---------------ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSV 171

Query: 603 PSEIGKLSSLIKLILRRNQLFGQLPSEL--GSLIQLEYLDLSSNRLSNSIPRSLGNLVKL 660
                  + L  + L +N+    +  +   G       LD+S   ++    + L +L +L
Sbjct: 172 QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKEL 231

Query: 661 HYLNL 665
              N 
Sbjct: 232 IARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 75.4 bits (186), Expect = 3e-15
 Identities = 40/232 (17%), Positives = 82/232 (35%), Gaps = 15/232 (6%)

Query: 493 LTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYG 552
                ++   +Q  IP+L    +   L+L   HL    S +F   P ++ I +S +    
Sbjct: 13  EEDFRVTCKDIQ-RIPSL--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ 69

Query: 553 QISSDW-GKCPNLGTFDVSVNNIIGSLPPEI-GDSSQLHVIDLSANHIIGKIPSE--IGK 608
           Q+ S        +   ++     +  + P+   +   L  + +    +    P    +  
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPDLTKVYS 128

Query: 609 LSSLIKLILRRNQLFGQLPSEL--GSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLS 666
                 L +  N     +P     G   +   L L +N  + S+     N  KL  + L+
Sbjct: 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187

Query: 667 TNQFIQEIPIK-LEKLIH-LSELDLSHNFLGKEIPSQIC-NMRSLEMLNLSH 715
            N+++  I       +    S LD+S   +   +PS+   +++ L   N   
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSV-TALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 69.6 bits (171), Expect = 3e-13
 Identities = 30/183 (16%), Positives = 67/183 (36%), Gaps = 15/183 (8%)

Query: 572 NNIIGSLPPEI-GDSSQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSE 629
              + ++P     +   +  I +S +  + ++ S     LS +  + +R  +    +  +
Sbjct: 40  ETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99

Query: 630 -LGSLIQLEYLDLSSNRLSNSIP--RSLGNLVKLHYLNLSTNQFIQEIP----IKLEKLI 682
            L  L  L++L + +  L    P    + +      L ++ N ++  IP      L    
Sbjct: 100 ALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE- 157

Query: 683 HLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPR-CFEEM-NGLLYIDISYN 740
               L L +N     +     N   L+ + L+ N     I +  F  + +G   +D+S  
Sbjct: 158 -TLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215

Query: 741 ELH 743
            + 
Sbjct: 216 SVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 17/118 (14%), Positives = 41/118 (34%), Gaps = 3/118 (2%)

Query: 636 LEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFL 694
            + L L    L      +  NL  +  + +S +  +Q++       L  ++ +++ +   
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 695 GKEIPSQIC-NMRSLEMLNLSHNNLSDFIPRCF-EEMNGLLYIDISYNELHGPIPNST 750
              I       +  L+ L + +  L  F         +    ++I+ N     IP + 
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 80.8 bits (200), Expect = 7e-17
 Identities = 63/244 (25%), Positives = 95/244 (38%), Gaps = 50/244 (20%)

Query: 123 IPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIE 182
            P      ++    +L   S +     Q   L+ +  +  + +         I +L  + 
Sbjct: 13  FPDDAF--AETIKANLKKKSVT-DAVTQNE-LNSIDQIIANNSDIKS--VQGIQYLPNVR 66

Query: 183 ALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLG---NLTNLAILYLHNNSL 239
            L L  N+L                               +     LTNL  L L  N L
Sbjct: 67  YLALGGNKLH-----------------------------DISALKELTNLTYLILTGNQL 97

Query: 240 SGSIPSEI-GNLKSLSSLALGNNKLCGSIP--LFLGNLTNLDTLYLRNNSFSSSIPSEI- 295
             S+P+ +   L +L  L L  N+L  S+P  +F   LTNL  L L +N   S +P  + 
Sbjct: 98  Q-SLPNGVFDKLTNLKELVLVENQL-QSLPDGVF-DKLTNLTYLNLAHNQLQS-LPKGVF 153

Query: 296 GNLKSLSILELGENRLNGSIPLSL-GNLTNLDTLYLYTNSLSGSIPSEI-GNLKSLSGLE 353
             L +L+ L+L  N+L  S+P  +   LT L  L LY N L  S+P  +   L SL  + 
Sbjct: 154 DKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIW 211

Query: 354 LADN 357
           L DN
Sbjct: 212 LHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 79.7 bits (197), Expect = 2e-16
 Identities = 57/208 (27%), Positives = 94/208 (45%), Gaps = 17/208 (8%)

Query: 323 TNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSS--SIPHYLGNLTNLAAFYLYK 380
                  L   S++    ++   L S+  +   ++++ S   I +    L N+    L  
Sbjct: 19  AETIKANLKKKSVT-DAVTQNE-LNSIDQIIANNSDIKSVQGIQY----LPNVRYLALGG 72

Query: 381 NSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLGSIPREI 439
           N L   I + +  L +L+ L L+ N+L  S+P+ +   LTNL  L L  N L  S+P  +
Sbjct: 73  NKLH-DISA-LKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQL-QSLPDGV 128

Query: 440 GN-LKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTL 498
            + L +L  L L  N+L +        LT++T L L  N L  +       L +L  L L
Sbjct: 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188

Query: 499 SDNQLQGSIPN--LRNLTNLIRLRLNRN 524
             NQL+ S+P+     LT+L  + L+ N
Sbjct: 189 YQNQLK-SVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 60/221 (27%), Positives = 91/221 (41%), Gaps = 22/221 (9%)

Query: 289 SSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKS 348
              P +           L +  +      +   L ++D +    + +  S+   I  L +
Sbjct: 11  QIFPDDAFA--ETIKANLKKKSVT-DAV-TQNELNSIDQIIANNSDIK-SVQG-IQYLPN 64

Query: 349 LSGLELADNELSSSIPHYLG---NLTNLAAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSE 404
           +  L L  N+L       +     LTNL    L  N L  S+P+ +   L +L  L L E
Sbjct: 65  VRYLALGGNKLHD-----ISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVE 118

Query: 405 NKLSGSIPHSLGN-LTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDNKLSNSISHS 462
           N+L  S+P  + + LTNL  L L  N L  S+P+ +   L +L EL L  N+L  S+   
Sbjct: 119 NQLQ-SLPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQ-SLPEG 175

Query: 463 L-GNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQ 502
           +   LT +  L LY N L  V       L  L  + L DN 
Sbjct: 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 78.5 bits (194), Expect = 4e-16
 Identities = 55/195 (28%), Positives = 79/195 (40%), Gaps = 19/195 (9%)

Query: 338 SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSL 397
             P +           L    ++ ++      L ++       + +  S+   I  L ++
Sbjct: 12  IFPDDAFA--ETIKANLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNV 65

Query: 398 SNLDLSENKLSGSIPHSLG---NLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDN 453
             L L  NKL       +     LTNL  L L  N L  S+P  +   L +L EL L +N
Sbjct: 66  RYLALGGNKLH-----DISALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVEN 119

Query: 454 KLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LR 511
           +L +        LT++T L L  N L  +       L  LT L LS NQLQ S+P     
Sbjct: 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFD 178

Query: 512 NLTNLIRLRLNRNHL 526
            LT L  LRL +N L
Sbjct: 179 KLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 69.7 bits (171), Expect = 4e-13
 Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 12/165 (7%)

Query: 102 SFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFL 160
                P++ YL L  N++  I    +  ++ L YL L+ N    ++P  +   L+ LK L
Sbjct: 58  GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKEL 114

Query: 161 YLSANQFSGRIPPQI-GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGS 218
            L  NQ    +P  +   L+ +  L+L  NQL   +P  V   L++L EL L+ N L+ S
Sbjct: 115 VLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQ-S 171

Query: 219 IPPSL-GNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNN 261
           +P  +   LT L  L L+ N L  S+P  +   L SL  + L +N
Sbjct: 172 LPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 68.5 bits (168), Expect = 9e-13
 Identities = 43/170 (25%), Positives = 68/170 (40%), Gaps = 21/170 (12%)

Query: 386 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTL--LGSIPREIGNLK 443
             P +          +L +  ++     +   L ++  +  +++ +  +  I      L 
Sbjct: 12  IFPDDAFA--ETIKANLKKKSVT-DAV-TQNELNSIDQIIANNSDIKSVQGIQY----LP 63

Query: 444 SLFELQLGDNKLSNSISHSLG---NLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSD 500
           ++  L LG NKL       +     LT++T L L  N L  +       L  L  L L +
Sbjct: 64  NVRYLALGGNKLH-----DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118

Query: 501 NQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHN 548
           NQLQ S+P+     LTNL  L L  N L       F     LT +DLS+N
Sbjct: 119 NQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 15/187 (8%)

Query: 561 CPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRN 620
                         +     +   +S +  I  + +  I  +   I  L ++  L L  N
Sbjct: 17  AFAETIKANLKKKSVTDAVTQNELNS-IDQIIANNS-DIKSVQG-IQYLPNVRYLALGGN 73

Query: 621 QLFGQLPSELG---SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIK 677
           +L      ++     L  L YL L+ N+L +        L  L  L L  NQ +Q +P  
Sbjct: 74  KL-----HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDG 127

Query: 678 L-EKLIHLSELDLSHNFLGKEIPSQIC-NMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYI 735
           + +KL +L+ L+L+HN L + +P  +   + +L  L+LS+N L       F+++  L  +
Sbjct: 128 VFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186

Query: 736 DISYNEL 742
            +  N+L
Sbjct: 187 RLYQNQL 193

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 80.1 bits (198), Expect = 8e-17
 Identities = 55/169 (32%), Positives = 73/169 (43%), Gaps = 9/169 (5%)

Query: 386 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKS 444
           S+PS I        LDL    L+     +   LT L  L L  N L  ++   +  +L  
Sbjct: 28  SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTE 84

Query: 445 LFELQLGDNKLSNSISHSL-GNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQL 503
           L  L L +N+L+ S+   +  +LT +  L L  N L  +       L KL  L L+ NQL
Sbjct: 85  LGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143

Query: 504 QGSIPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNF 550
           Q SIP      LTNL  L L+ N L      +F    KL  I L  N F
Sbjct: 144 Q-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 78.6 bits (194), Expect = 3e-16
 Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 14/162 (8%)

Query: 275 TNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSL-GNLTNLDTLYLYTN 333
            + + L L++   ++   +    L  L+ L L  N+L  ++   +  +LT L TL L  N
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANN 93

Query: 334 SLSGSIPSEI-GNLKSLSGLELADNELSSSIPHYLG---NLTNLAAFYLYKNSLSGSIPS 389
            L+ S+P  +  +L  L  L L  N+L  S+P   G    LT L    L  N L  SIP+
Sbjct: 94  QLA-SLPLGVFDHLTQLDKLYLGGNQL-KSLPS--GVFDRLTKLKELRLNTNQLQ-SIPA 148

Query: 390 EI-GNLKSLSNLDLSENKLSGSIPH-SLGNLTNLAILYLHSN 429
                L +L  L LS N+L  S+PH +   L  L  + L  N
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 78.2 bits (193), Expect = 4e-16
 Identities = 54/169 (31%), Positives = 76/169 (44%), Gaps = 12/169 (7%)

Query: 218 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIP--LFLGNLT 275
           S+P   G   +   L L +  L+    +    L  L+ L L  N+L  ++   +F   LT
Sbjct: 28  SVPS--GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDD-LT 83

Query: 276 NLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIPLSL-GNLTNLDTLYLYTN 333
            L TL L NN   +S+P  +  +L  L  L LG N+L  S+P  +   LT L  L L TN
Sbjct: 84  ELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTN 141

Query: 334 SLSGSIPSEI-GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKN 381
            L  SIP+     L +L  L L+ N+L S        L  L    L+ N
Sbjct: 142 QLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 75.5 bits (186), Expect = 3e-15
 Identities = 54/169 (31%), Positives = 77/169 (45%), Gaps = 10/169 (5%)

Query: 338 SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKS 396
           S+PS I        L+L    L++        LT L    L  N L  ++ + +  +L  
Sbjct: 28  SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTE 84

Query: 397 LSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDNK 454
           L  L L+ N+L+ S+P  +  +LT L  LYL  N L  S+P  +   L  L EL+L  N+
Sbjct: 85  LGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQ 142

Query: 455 LSNSISHSL-GNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQ 502
           L  SI       LT++  L+L  N L  V       L KL  +TL  NQ
Sbjct: 143 LQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 75.5 bits (186), Expect = 3e-15
 Identities = 54/179 (30%), Positives = 82/179 (45%), Gaps = 21/179 (11%)

Query: 112 LDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGR 170
           LDLQ   +  +       ++KL +L+L  N    T+   +  +L+ L  L L+ NQ +  
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-S 97

Query: 171 IPPQI-GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPPSL-GNLT 227
           +P  +  HL+ ++ L+L  NQL   +P  V   L+ L EL L +N L+ SIP      LT
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLT 155

Query: 228 NLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKL-CGSIPLFLGNLTNLDTLYLRN 284
           NL  L L  N L  S+P      L  L ++ L  N+  C          +  + LYL  
Sbjct: 156 NLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFDC----------SRCEILYLSQ 203

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 73.6 bits (181), Expect = 1e-14
 Identities = 51/155 (32%), Positives = 66/155 (42%), Gaps = 10/155 (6%)

Query: 160 LYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGS 218
           L L +   +         L+ +  L+L  NQL   +   V   L+ L  L L +N L  S
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLA-S 97

Query: 219 IPPSL-GNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIP--LFLGNL 274
           +P  +  +LT L  LYL  N L  S+PS +   L  L  L L  N+L  SIP   F   L
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQL-QSIPAGAF-DKL 154

Query: 275 TNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGEN 309
           TNL TL L  N   S        L  L  + L  N
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 73.6 bits (181), Expect = 2e-14
 Identities = 50/157 (31%), Positives = 73/157 (46%), Gaps = 10/157 (6%)

Query: 134 KYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQLS 192
           + LDL S   +         L+ L +L L  NQ    +   +   L+ +  L L  NQL+
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLA 96

Query: 193 GPIPHEV-GGLSSLNELALTSNFLKGSIPPSL-GNLTNLAILYLHNNSLSGSIPSEI-GN 249
             +P  V   L+ L++L L  N LK S+P  +   LT L  L L+ N L  SIP+     
Sbjct: 97  S-LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDK 153

Query: 250 LKSLSSLALGNNKLCGSIPL-FLGNLTNLDTLYLRNN 285
           L +L +L+L  N+L  S+P      L  L T+ L  N
Sbjct: 154 LTNLQTLSLSTNQL-QSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 71.7 bits (176), Expect = 5e-14
 Identities = 56/181 (30%), Positives = 74/181 (40%), Gaps = 34/181 (18%)

Query: 182 EALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSL-GNLTNLAILYLHNNSLS 240
           E L L    L+        GL+ L  L L  N L+ ++   +  +LT L  L L NN L+
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 241 GSIPSEI-GNLKSLSSLALGNNKLCGSIP--LFLGNLTNLDTLYLRNNSFSSSIPSEIGN 297
            S+P  +  +L  L  L LG N+L  S+P  +F   LT L  L L  N   S IP+   +
Sbjct: 97  -SLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVF-DRLTKLKELRLNTNQLQS-IPAGAFD 152

Query: 298 LKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI-GNLKSLSGLELAD 356
                                   LTNL TL L TN L  S+P      L  L  + L  
Sbjct: 153 -----------------------KLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFG 188

Query: 357 N 357
           N
Sbjct: 189 N 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 63.2 bits (154), Expect = 4e-11
 Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 8/145 (5%)

Query: 97  TLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLS 155
           TL D +F     L +L+L  NQ+  +      ++++L  L L++N  + ++P  +  +L+
Sbjct: 49  TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLT 107

Query: 156 MLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSN 213
            L  LYL  NQ    +P  +   L+ ++ L L  NQL   IP      L++L  L+L++N
Sbjct: 108 QLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTN 165

Query: 214 FLKGSIPP-SLGNLTNLAILYLHNN 237
            L+ S+P  +   L  L  + L  N
Sbjct: 166 QLQ-SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 54/207 (26%), Positives = 76/207 (36%), Gaps = 59/207 (28%)

Query: 470 TLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLT 527
             L L    L+ +       L KLT L L  NQLQ ++      +LT L  L L  N L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 528 CNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS-S 586
                                                            SLP  + D  +
Sbjct: 97  -------------------------------------------------SLPLGVFDHLT 107

Query: 587 QLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSEL-GSLIQLEYLDLSSN 644
           QL  + L  N +   +PS +  +L+ L +L L  NQL   +P+     L  L+ L LS+N
Sbjct: 108 QLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTN 165

Query: 645 RLSNSIPR-SLGNLVKLHYLNLSTNQF 670
           +L  S+P  +   L KL  + L  NQF
Sbjct: 166 QLQ-SVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 51/217 (23%), Positives = 76/217 (35%), Gaps = 57/217 (26%)

Query: 432 LGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLV 491
           L S+P  I       +L L    L+     +   LT +T L L  N L  +      +L 
Sbjct: 26  LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT 83

Query: 492 KLTMLTLSDNQLQGSIPNL--RNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNN 549
           +L  L L++NQL  S+P     +LT L +L L  N L                       
Sbjct: 84  ELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK---------------------- 120

Query: 550 FYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS-SQLHVIDLSANHIIGKIPSEI-G 607
                                      SLP  + D  ++L  + L+ N  +  IP+    
Sbjct: 121 ---------------------------SLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFD 152

Query: 608 KLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSN 644
           KL++L  L L  NQL          L +L+ + L  N
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 4/108 (3%)

Query: 637 EYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFLG 695
           E LDL S  L+     +   L KL +LNL  NQ +Q +   + + L  L  L L++N L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQL- 95

Query: 696 KEIPSQI-CNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 742
             +P  +  ++  L+ L L  N L       F+ +  L  + ++ N+L
Sbjct: 96  ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 33/147 (22%), Positives = 65/147 (44%), Gaps = 7/147 (4%)

Query: 386 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKS 444
            IP+ +   ++++ + L +N +    P +      L  + L +N +   +  +    L+S
Sbjct: 25  EIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRS 81

Query: 445 LFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ 504
           L  L L  NK++         L  + LL L  N ++ +  +   +L  L +L+L DN+LQ
Sbjct: 82  LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141

Query: 505 GSIPN--LRNLTNLIRLRLNRNHLTCN 529
            +I       L  +  + L +N   C+
Sbjct: 142 -TIAKGTFSPLRAIQTMHLAQNPFICD 167

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 14/146 (9%)

Query: 218 SIPPSLGNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIP--LFLGNL 274
            IP +L     +  + L  N++   IP       K L  + L NN++   +    F G L
Sbjct: 25  EIPTNL--PETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQG-L 79

Query: 275 TNLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIPL-SLGNLTNLDTLYLYT 332
            +L++L L  N  +  +P  +   L SL +L L  N++N  + + +  +L NL+ L LY 
Sbjct: 80  RSLNSLVLYGNKITE-LPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYD 137

Query: 333 NSLSGSIPSEI-GNLKSLSGLELADN 357
           N L  +I       L+++  + LA N
Sbjct: 138 NKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 8/132 (6%)

Query: 160 LYLSANQFSGRIPPQI-GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKG 217
           + L  N     IPP        +  + L  NQ+S  +  +   GL SLN L L  N +  
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 218 SIPPSL-GNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIPLFLGNLT 275
            +P SL   L +L +L L+ N ++  +  +   +L +L+ L+L +NKL          L 
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152

Query: 276 NLDTLYLRNNSF 287
            + T++L  N F
Sbjct: 153 AIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 70.8 bits (174), Expect = 7e-14
 Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 10/132 (7%)

Query: 207 ELALTSNFLKGSIPP-SLGNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLC 264
           E+ L  N +K  IPP +      L  + L NN +S  +  +    L+SL+SL L  NK+ 
Sbjct: 36  EIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI- 92

Query: 265 GSIP--LFLGNLTNLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIPLSLGN 321
             +P  LF   L +L  L L  N  +  +  +   +L +L++L L +N+L      +   
Sbjct: 93  TELPKSLF-EGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 322 LTNLDTLYLYTN 333
           L  + T++L  N
Sbjct: 151 LRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 70.1 bits (172), Expect = 1e-13
 Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 8/135 (5%)

Query: 275 TNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPL-SLGNLTNLDTLYLYTN 333
             +  + L  N+     P      K L  ++L  N+++  +   +   L +L++L LY N
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGN 90

Query: 334 SLSGSIPSEI-GNLKSLSGLELADNELSSSIPHYL-GNLTNLAAFYLYKNSLSGSIPSEI 391
            ++  +P  +   L SL  L L  N+++  +      +L NL    LY N L  +I    
Sbjct: 91  KIT-ELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQ-TIAKGT 147

Query: 392 -GNLKSLSNLDLSEN 405
              L+++  + L++N
Sbjct: 148 FSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 10/133 (7%)

Query: 134 KYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQL 191
             + L  N+    IPP        L+ + LS NQ S  + P     L  + +L L+ N++
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI 92

Query: 192 SGPIPHEV-GGLSSLNELALTSNFLKGSIPP-SLGNLTNLAILYLHNNSLSGSIPSEI-G 248
           +  +P  +  GL SL  L L +N +   +   +  +L NL +L L++N L  +I      
Sbjct: 93  TE-LPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFS 149

Query: 249 NLKSLSSLALGNN 261
            L+++ ++ L  N
Sbjct: 150 PLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 65.1 bits (159), Expect = 7e-12
 Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 4/129 (3%)

Query: 614 KLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQE 673
           ++ L +N +    P       +L  +DLS+N++S   P +   L  L+ L L  N+ I E
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITE 94

Query: 674 IPIKL-EKLIHLSELDLSHNFLGKEIPSQI-CNMRSLEMLNLSHNNLSDFIPRCFEEMNG 731
           +P  L E L  L  L L+ N +   +      ++ +L +L+L  N L       F  +  
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153

Query: 732 LLYIDISYN 740
           +  + ++ N
Sbjct: 154 IQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 61.6 bits (150), Expect = 9e-11
 Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 4/109 (3%)

Query: 637 EYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFLG 695
             + L  N +    P +     KL  ++LS NQ I E+     + L  L+ L L  N + 
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNKI- 92

Query: 696 KEIPSQI-CNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 743
            E+P  +   + SL++L L+ N ++      F++++ L  + +  N+L 
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 3/106 (2%)

Query: 447 ELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGS 506
           E++L  N +      +      +  + L +N +S + P+    L  L  L L  N++   
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-E 94

Query: 507 IPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNF 550
           +P      L +L  L LN N + C   ++F     L  + L  N  
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 7/125 (5%)

Query: 572 NNIIGSLPPEIGDS-SQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSE 629
            N I  +PP       +L  IDLS N I  ++  +    L SL  L+L  N++  +LP  
Sbjct: 41  QNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNKI-TELPKS 98

Query: 630 L-GSLIQLEYLDLSSNRLSNSIPR-SLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSEL 687
           L   L  L+ L L++N+++  +   +  +L  L+ L+L  N+           L  +  +
Sbjct: 99  LFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157

Query: 688 DLSHN 692
            L+ N
Sbjct: 158 HLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 30/144 (20%)

Query: 97  TLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSM 156
            +   +FS +  L  +DL  NQI                 +L+ ++F G        L  
Sbjct: 46  VIPPGAFSPYKKLRRIDLSNNQI----------------SELAPDAFQG--------LRS 81

Query: 157 LKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNF 214
           L  L L  N+ +  +P  +   L  ++ L L  N+++  +  +    L +LN L+L  N 
Sbjct: 82  LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNK 139

Query: 215 LKGSIPP-SLGNLTNLAILYLHNN 237
           L+ +I   +   L  +  ++L  N
Sbjct: 140 LQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 39/161 (24%), Positives = 62/161 (38%), Gaps = 30/161 (18%)

Query: 514 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN 573
             +  +RL +N +      +F  + KL  IDLS+N    QIS                  
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN----QISE----------------- 70

Query: 574 IIGSLPPEIGDS-SQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSEL- 630
               L P+       L+ + L  N I  ++P  +   L SL  L+L  N++   L  +  
Sbjct: 71  ----LAPDAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANKI-NCLRVDAF 124

Query: 631 GSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFI 671
             L  L  L L  N+L      +   L  +  ++L+ N FI
Sbjct: 125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 74.7 bits (184), Expect = 3e-15
 Identities = 33/148 (22%), Positives = 56/148 (37%), Gaps = 8/148 (5%)

Query: 386 SIPSEIGNLKSLSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLGSIPREI-GNLK 443
            IP  I   +  + L L+ N+ +      +   L  L  +   +N +   I         
Sbjct: 25  KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGAS 81

Query: 444 SLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQL 503
            + E+ L  N+L N        L  +  L L  N ++ V  +    L  + +L+L DNQ+
Sbjct: 82  GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141

Query: 504 QGSIPN--LRNLTNLIRLRLNRNHLTCN 529
             ++       L +L  L L  N   CN
Sbjct: 142 T-TVAPGAFDTLHSLSTLNLLANPFNCN 168

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 71.2 bits (175), Expect = 4e-14
 Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 11/134 (8%)

Query: 160 LYLSANQFSGRIPPQIG--HLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLK 216
           L L+ N+F+  +        L  +  ++   N+++  I      G S +NE+ LTSN L+
Sbjct: 37  LRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNEILLTSNRLE 94

Query: 217 GSIPPSL-GNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIPL-FLGN 273
            ++   +   L +L  L L +N ++  + ++    L S+  L+L +N++  ++       
Sbjct: 95  -NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQI-TTVAPGAFDT 151

Query: 274 LTNLDTLYLRNNSF 287
           L +L TL L  N F
Sbjct: 152 LHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 70.5 bits (173), Expect = 8e-14
 Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 13/146 (8%)

Query: 218 SIPPSLGNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIP--LFLGNL 274
            IP  +      A L L+NN  +    + I   L  L  +   NNK+   I    F G  
Sbjct: 25  KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEG-A 80

Query: 275 TNLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIPL-SLGNLTNLDTLYLYT 332
           + ++ + L +N   + +  ++   L+SL  L L  NR+   +   S   L+++  L LY 
Sbjct: 81  SGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYD 138

Query: 333 NSLSGSIPSEI-GNLKSLSGLELADN 357
           N ++ ++       L SLS L L  N
Sbjct: 139 NQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 11/132 (8%)

Query: 136 LDLSSNSFSGTIPPQIG--NLSMLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQLS 192
           L L++N F+  +        L  L+ +  S N+ +  I        S +  + L  N+L 
Sbjct: 37  LRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLE 94

Query: 193 GPIPHEV-GGLSSLNELALTSNFLKGSIPP-SLGNLTNLAILYLHNNSLSGSIPSEI-GN 249
             + H++  GL SL  L L SN +   +   S   L+++ +L L++N ++ ++       
Sbjct: 95  N-VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDT 151

Query: 250 LKSLSSLALGNN 261
           L SLS+L L  N
Sbjct: 152 LHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 68.1 bits (167), Expect = 5e-13
 Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 5/134 (3%)

Query: 275 TNLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTN 333
                L L NN F+    + I   L  L  +    N++      +    + ++ + L +N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 334 SLSGSIPSEI-GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI- 391
            L  ++  ++   L+SL  L L  N ++         L+++    LY N ++ ++     
Sbjct: 92  RLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAF 149

Query: 392 GNLKSLSNLDLSEN 405
             L SLS L+L  N
Sbjct: 150 DTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 3/130 (2%)

Query: 377 YLYKNSLSGSIPSEI-GNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSI 435
            L  N  +    + I   L  L  ++ S NK++     +    + +  + L SN  L ++
Sbjct: 38  RLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RLENV 96

Query: 436 PREI-GNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLT 494
             ++   L+SL  L L  N+++   + S   L+ + LL+LYDN ++ V P     L  L+
Sbjct: 97  QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS 156

Query: 495 MLTLSDNQLQ 504
            L L  N   
Sbjct: 157 TLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 65.8 bits (161), Expect = 3e-12
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 7/143 (4%)

Query: 577 SLPPEIGDSSQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSELGSLIQ 635
            +P  I   +    + L+ N       + I  KL  L K+    N++             
Sbjct: 25  KIPEHIPQYTA--ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82

Query: 636 LEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFL 694
           +  + L+SNRL N   +    L  L  L L +N+ I  +       L  +  L L  N +
Sbjct: 83  VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQI 141

Query: 695 GKEIPSQI-CNMRSLEMLNLSHN 716
              +       + SL  LNL  N
Sbjct: 142 -TTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 30/139 (21%)

Query: 102 SFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLY 161
            F   P L  ++   N+I                 D+   +F G         S +  + 
Sbjct: 52  IFKKLPQLRKINFSNNKI----------------TDIEEGAFEG--------ASGVNEIL 87

Query: 162 LSANQFSGRIPPQI-GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSI 219
           L++N+    +  ++   L  ++ L L  N+++  + ++   GLSS+  L+L  N +  ++
Sbjct: 88  LTSNRLE-NVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQIT-TV 144

Query: 220 PP-SLGNLTNLAILYLHNN 237
            P +   L +L+ L L  N
Sbjct: 145 APGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 22/110 (20%), Positives = 49/110 (44%), Gaps = 5/110 (4%)

Query: 637 EYLDLSSNRLSNSIPRSL-GNLVKLHYLNLSTNQFIQEIPIK-LEKLIHLSELDLSHNFL 694
             L L++N  +      +   L +L  +N S N+ I +I     E    ++E+ L+ N L
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRL 93

Query: 695 GKEIPSQIC-NMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 743
            + +  ++   + SL+ L L  N ++      F  ++ +  + +  N++ 
Sbjct: 94  -ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 28/143 (19%), Positives = 65/143 (45%), Gaps = 9/143 (6%)

Query: 602 IPSEIGKLSSLIKLILRRNQLFGQLPSE--LGSLIQLEYLDLSSNRLSNSIPRSLGNLVK 659
           IP  I       +L L  N+    L +      L QL  ++ S+N++++    +      
Sbjct: 26  IPEHIP--QYTAELRLNNNEF-TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82

Query: 660 LHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFLGKEIPSQI-CNMRSLEMLNLSHNN 717
           ++ + L++N+ ++ +  K+ + L  L  L L  N +   + +     + S+ +L+L  N 
Sbjct: 83  VNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQ 140

Query: 718 LSDFIPRCFEEMNGLLYIDISYN 740
           ++   P  F+ ++ L  +++  N
Sbjct: 141 ITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 33/162 (20%)

Query: 514 TNLIRLRLNRNHLTC-NISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVN 572
                LRLN N  T    +  F   P+L  I+ S+N                        
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK----------------------- 68

Query: 573 NIIGSLPPEIGDS-SQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSEL 630
             I  +     +  S ++ I L++N +   +  ++   L SL  L+LR N++   + ++ 
Sbjct: 69  --ITDIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRI-TCVGNDS 124

Query: 631 -GSLIQLEYLDLSSNRLSNSIPR-SLGNLVKLHYLNLSTNQF 670
              L  +  L L  N+++ ++   +   L  L  LNL  N F
Sbjct: 125 FIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 11/132 (8%)

Query: 63  NNATKISPCAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGI 122
           N  T +     F      + ++  IN +N  +   + + +F     +  + L  N++   
Sbjct: 42  NEFTVLEATGIF----KKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLEN- 95

Query: 123 IPPQI-GNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGRIPPQI-GHLS 179
           +  ++   +  LK L L SN  +  +       LS ++ L L  NQ +  + P     L 
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLH 153

Query: 180 YIEALHLFKNQL 191
            +  L+L  N  
Sbjct: 154 SLSTLNLLANPF 165

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 78.6 bits (193), Expect = 3e-15
 Identities = 47/302 (15%), Positives = 97/302 (32%), Gaps = 22/302 (7%)

Query: 468 HMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLT 527
             TLL + D A   V         + + + L D         L   T  +    + +   
Sbjct: 271 MGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKE 330

Query: 528 CNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQ 587
           C + +         +   S  +          +   +   ++     +  L PE      
Sbjct: 331 CVLLK----DRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLL 386

Query: 588 LHVIDLSANHIIGKIPSEIGKLSSLIKLI--------LRRNQLFGQLPSELGSLIQLEYL 639
             ++ + A   +      +   S+L  +           R++   +          +  L
Sbjct: 387 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVL 446

Query: 640 DLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIP 699
            L+   L+      L  L+ + +L+LS N+ ++ +P  L  L  L  L  S N L + + 
Sbjct: 447 HLAHKDLTV--LCHLEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNAL-ENVD 502

Query: 700 SQICNMRSLEMLNLSHNNLSDF-IPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALME 758
             + N+  L+ L L +N L      +       L+ +++  N     +       + L E
Sbjct: 503 G-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN----SLCQEEGIQERLAE 557

Query: 759 AL 760
            L
Sbjct: 558 ML 559

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 78.6 bits (193), Expect = 3e-15
 Identities = 50/327 (15%), Positives = 85/327 (25%), Gaps = 25/327 (7%)

Query: 93  GLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIG 152
            L G           H++  +  ++  F         +  L  +   +        P   
Sbjct: 234 WLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGR 293

Query: 153 NLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPI-----PHEVGGLSSLNE 207
           N     +L            PQ             K  +           +      L  
Sbjct: 294 NRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFR 353

Query: 208 LALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSI 267
             L+       +   L +   L  L   N     +I   +  L  L              
Sbjct: 354 CELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS--- 409

Query: 268 PLFLGNLTNLDTLYLRNNSFSSSI-----PSEIGNLKSLSILELGENRLNGSIPLSLGNL 322
                 L  +D +         S               + +L L    L   +   L  L
Sbjct: 410 -----TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLC-HLEQL 462

Query: 323 TNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNS 382
             +  L L  N L  ++P  +  L+ L  L+ +DN L  ++   + NL  L    L  N 
Sbjct: 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL-ENVDG-VANLPRLQELLLCNNR 519

Query: 383 LSG-SIPSEIGNLKSLSNLDLSENKLS 408
           L   +    + +   L  L+L  N L 
Sbjct: 520 LQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 74.0 bits (181), Expect = 1e-13
 Identities = 45/298 (15%), Positives = 87/298 (29%), Gaps = 43/298 (14%)

Query: 398 SNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSN 457
                  ++L       +   ++     +          R+    + LF  +L   K + 
Sbjct: 304 LPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST- 362

Query: 458 SISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLI 517
                   L     L   +      +   +  +  L  L      LQ        L  + 
Sbjct: 363 ---VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ----YFSTLKAVD 415

Query: 518 RLRL-----NRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVN 572
            +R       R+      S     +  +  + L+H +                       
Sbjct: 416 PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL---------------------- 453

Query: 573 NIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGS 632
               ++   +     +  +DLS N +   +P  +  L  L  L    N L  +    + +
Sbjct: 454 ----TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL--ENVDGVAN 506

Query: 633 LIQLEYLDLSSNRLSN-SIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDL 689
           L +L+ L L +NRL   +  + L +  +L  LNL  N   QE  I+      L  +  
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 73.3 bits (179), Expect = 2e-13
 Identities = 42/221 (19%), Positives = 81/221 (36%), Gaps = 29/221 (13%)

Query: 103 FSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFL-- 160
            ++   L   +L V +   ++  ++ +  +L+ L+  +     TI   +  L  L +   
Sbjct: 345 SATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKE 403

Query: 161 -------------------YLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGG 201
                                  ++F           + +  LHL    L+  +   +  
Sbjct: 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQ 461

Query: 202 LSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNN 261
           L  +  L L+ N L+ ++PP+L  L  L +L   +N+L  ++   + NL  L  L L NN
Sbjct: 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN 518

Query: 262 KLCG-SIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSL 301
           +L   +    L +   L  L L+ NS           L  +
Sbjct: 519 RLQQSAAIQPLVSCPRLVLLNLQGNSL-CQEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 70.9 bits (173), Expect = 8e-13
 Identities = 41/245 (16%), Positives = 78/245 (31%), Gaps = 35/245 (14%)

Query: 356 DNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSL 415
           +++L       +   ++     +           +    + L   +LS  K +  +   L
Sbjct: 310 NDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VLQSEL 368

Query: 416 GNLTNLAILYLHSNTLLGSI---PREIGNLKSLFELQLGDNKLSNSISH----------- 461
            +   L  L   +   L +I    R +  L    E     + L                 
Sbjct: 369 ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428

Query: 462 -------SLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLT 514
                         + +L L    L+ +    L  L+ +T L LS N+L+   P L  L 
Sbjct: 429 FLLENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPPALAALR 486

Query: 515 NLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISS-----DWGKCPNLGTFDV 569
            L  L+ + N L  N+       P+L  + L +N    ++           CP L   ++
Sbjct: 487 CLEVLQASDNALE-NVDG-VANLPRLQELLLCNN----RLQQSAAIQPLVSCPRLVLLNL 540

Query: 570 SVNNI 574
             N++
Sbjct: 541 QGNSL 545

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 44/136 (32%), Positives = 60/136 (44%), Gaps = 11/136 (8%)

Query: 323 TNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSS---SIPHYLGNLTNLAAFYLY 379
           TN   LYL+ N ++   P    +L +L  L L  N+L +    +   L  LT L    L 
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVL---DLG 96

Query: 380 KNSLSGSIPSEI-GNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPRE 438
            N L+  +PS +   L  L  L +  NKL+  +P  +  LT+L  L L  N  L SIP  
Sbjct: 97  TNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ-LKSIPHG 153

Query: 439 I-GNLKSLFELQLGDN 453
               L SL    L  N
Sbjct: 154 AFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 70.9 bits (174), Expect = 9e-14
 Identities = 51/144 (35%), Positives = 72/144 (50%), Gaps = 11/144 (7%)

Query: 218 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIP--LFLGNLT 275
           S+P   G  TN  ILYLH+N ++   P    +L +L  L LG+N+L G++P  +F  +LT
Sbjct: 33  SVPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVF-DSLT 88

Query: 276 NLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNS 334
            L  L L  N   + +PS +   L  L  L +  N+L   +P  +  LT+L  L L  N 
Sbjct: 89  QLTVLDLGTNQL-TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ 146

Query: 335 LSGSIPSEI-GNLKSLSGLELADN 357
           L  SIP      L SL+   L  N
Sbjct: 147 LK-SIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 65.1 bits (159), Expect = 6e-12
 Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 5/128 (3%)

Query: 377 YLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLGSI 435
           YL+ N ++   P    +L +L  L L  N+L  ++P  +  +LT L +L L +N L   +
Sbjct: 46  YLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT-VL 103

Query: 436 PREI-GNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLT 494
           P  +   L  L EL +  NKL+  +   +  LTH+T LAL  N L  +       L  LT
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162

Query: 495 MLTLSDNQ 502
              L  N 
Sbjct: 163 HAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 65.1 bits (159), Expect = 8e-12
 Identities = 43/131 (32%), Positives = 58/131 (44%), Gaps = 7/131 (5%)

Query: 134 KYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQLS 192
           + L L  N  +   P    +L  LK LYL +NQ    +P  +   L+ +  L L  NQL+
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 193 GPIPHEV-GGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEI-GNL 250
             +P  V   L  L EL +  N L   +P  +  LT+L  L L  N L  SIP      L
Sbjct: 102 V-LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRL 158

Query: 251 KSLSSLALGNN 261
            SL+   L  N
Sbjct: 159 SSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 5/129 (3%)

Query: 111 YLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSG 169
            L L  NQI  + P    ++  LK L L SN     +P  +  +L+ L  L L  NQ + 
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT- 101

Query: 170 RIPPQI-GHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTN 228
            +P  +   L +++ L +  N+L+  +P  +  L+ L  LAL  N LK     +   L++
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160

Query: 229 LAILYLHNN 237
           L   YL  N
Sbjct: 161 LTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 7/119 (5%)

Query: 602 IPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSL-GNLVKL 660
           +P+ I   ++   L L  NQ+    P    SLI L+ L L SN+L  ++P  +  +L +L
Sbjct: 34  VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQL 90

Query: 661 HYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNL 718
             L+L TNQ +  +P  + ++L+HL EL +  N L  E+P  I  +  L  L L  N L
Sbjct: 91  TVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQL 147

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.5 bits (121), Expect = 6e-07
 Identities = 39/178 (21%), Positives = 59/178 (33%), Gaps = 54/178 (30%)

Query: 470 TLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLT 527
            +L L+DN ++ + P    +L+ L  L L  NQL  ++P     +LT L  L L  N LT
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 528 CNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS-S 586
                                                             LP  + D   
Sbjct: 102 -------------------------------------------------VLPSAVFDRLV 112

Query: 587 QLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSN 644
            L  + +  N  + ++P  I +L+ L  L L +NQL          L  L +  L  N
Sbjct: 113 HLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 42/176 (23%), Positives = 62/176 (35%), Gaps = 56/176 (31%)

Query: 514 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN 573
           TN   L L+ N +T      F     L  + L                          +N
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLG-------------------------SN 74

Query: 574 IIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSEL-GS 632
            +G+LP  + D                        L+ L  L L  NQL   LPS +   
Sbjct: 75  QLGALPVGVFD-----------------------SLTQLTVLDLGTNQL-TVLPSAVFDR 110

Query: 633 LIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPI----KLEKLIHL 684
           L+ L+ L +  N+L+  +PR +  L  L +L L  NQ ++ IP     +L  L H 
Sbjct: 111 LVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHA 164

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 5/108 (4%)

Query: 637 EYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFLG 695
           + L L  N+++   P    +L+ L  L L +NQ +  +P+ + + L  L+ LDL  N L 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQL- 100

Query: 696 KEIPSQICN-MRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 742
             +PS + + +  L+ L +  N L++ +PR  E +  L ++ +  N+L
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQL 147

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 74.7 bits (184), Expect = 3e-14
 Identities = 63/419 (15%), Positives = 115/419 (27%), Gaps = 90/419 (21%)

Query: 395 KSLSNLDLSENKLSG----SIPHSLGNLTNLAILYLHSNTL----LGSIPREIGNLKSLF 446
            S+    L  + ++     S+   L    ++  + L  NT+       +   I + K L 
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 447 ELQLGDNKLSN----------SISHSLGNLTHMTLLALYDNALS--GVIP--EELGNLVK 492
             +  D                +  +L     +  + L DNA       P  + L     
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123

Query: 493 LTMLTLSDNQL--------------QGSIPNLRNLTNLIRLRLNRNHLT----CNISESF 534
           L  L L +N L                     +N   L  +   RN L        +++F
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183

Query: 535 GIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLS 594
             H  L  + +  N                      + +++      +    +L V+DL 
Sbjct: 184 QSHRLLHTVKMVQNGIR----------------PEGIEHLLLEG---LAYCQELKVLDLQ 224

Query: 595 ANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSN----SI 650
            N       + +G  SS + + L+                 L  L L+   LS     ++
Sbjct: 225 DNTF-----THLG--SSALAIALKSWP-------------NLRELGLNDCLLSARGAAAV 264

Query: 651 PRSLGNLV--KLHYLNLSTNQFIQEIPIKL-----EKLIHLSELDLSHNFLGKEIPSQIC 703
             +   L    L  L L  N+   +    L     EK+  L  L+L+ N   +E      
Sbjct: 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDE 324

Query: 704 NMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQG 762
                        +  D +    +E       +                   L + L  
Sbjct: 325 IREVFSTRGRGELDELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKEDKELADELSK 383

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 70.5 bits (173), Expect = 6e-13
 Identities = 49/316 (15%), Positives = 96/316 (30%), Gaps = 65/316 (20%)

Query: 493 LTMLTLSDNQL-----QGSIPNLRNLTNLIRLRLNRNHLTCN----ISESFGIHPKLTFI 543
           +   +L  + +     +     L    ++  + L+ N +       +SE+      L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 544 DLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHI----I 599
           + S + F G++  +  +              +  L   +    +LH + LS N       
Sbjct: 66  EFS-DIFTGRVKDEIPEA-------------LRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111

Query: 600 GKIPSEIGKLSSLIKLILRRNQL-------------FGQLPSELGSLIQLEYLDLSSNRL 646
             +   + K + L  L L  N L                +  +  +   L  +    NRL
Sbjct: 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171

Query: 647 SN----SIPRSLGNLVKLHYLNLSTNQFIQE-----IPIKLEKLIHLSELDLSHNFLG-- 695
            N       ++  +   LH + +  N    E     +   L     L  LDL  N     
Sbjct: 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL 231

Query: 696 --KEIPSQICNMRSLEMLNLSHNNLSD----FIPRCFEEMN--GLLYIDISYNELHGPIP 747
               +   + +  +L  L L+   LS      +   F ++   GL  + + YNE+     
Sbjct: 232 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI----- 286

Query: 748 NSTAFSDALMEALQGN 763
                   L   +   
Sbjct: 287 -ELDAVRTLKTVIDEK 301

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 56/383 (14%), Positives = 112/383 (29%), Gaps = 80/383 (20%)

Query: 347 KSLSGLELADNELSS----SIPHYLGNLTNLAAFYLYKNSLSG----SIPSEIGNLKSLS 398
            S+ G  L  + +++    S+   L    ++    L  N++       +   I + K L 
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 399 NLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSN- 457
             + S+             L  L               + +     L  ++L DN     
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLL--------------QALLKCPKLHTVRLSDNAFGPT 109

Query: 458 ---SISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLT 514
               +   L   T +  L L++N L      ++          L +  +       +N  
Sbjct: 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR-------ALQELAVNK---KAKNAP 159

Query: 515 NLIRLRLNRNHLT----CNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVS 570
            L  +   RN L        +++F  H  L  + +  N                      
Sbjct: 160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR----------------PEG 203

Query: 571 VNNIIGSLPPEIGDSSQLHVIDLSANHI----IGKIPSEIGKLSSLIKLILRRNQLFGQL 626
           + +++      +    +L V+DL  N         +   +    +L +L L    L  + 
Sbjct: 204 IEHLLLEG---LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260

Query: 627 PSELGSLIQ------LEYLDLSSNRLSNSIPRSLG-----NLVKLHYLNLSTNQF----- 670
            + +           L+ L L  N +     R+L       +  L +L L+ N+F     
Sbjct: 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320

Query: 671 -IQEIPIKLEKLIHLSELDLSHN 692
            + EI             +L   
Sbjct: 321 VVDEIREVFSTRGRGELDELDDM 343

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 46/331 (13%), Positives = 95/331 (28%), Gaps = 64/331 (19%)

Query: 127 IGNISKLKYLDLSSNSFSG----TIPPQIGNLSMLKFLYLSANQFSGR----IPPQIGHL 178
           +   S ++   L  ++ +     ++   +     +K + LS N         +   I   
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 179 SYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNS 238
             +E                   L  L +              +L     L  + L +N+
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQ--------------ALLKCPKLHTVRLSDNA 105

Query: 239 LSGSIPSEIGNL----KSLSSLALGNNKL-------------CGSIPLFLGNLTNLDTLY 281
              +    + +       L  L L NN L               ++     N   L ++ 
Sbjct: 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII 165

Query: 282 LRNNSFS----SSIPSEIGNLKSLSILELGENRLN-----GSIPLSLGNLTNLDTLYLYT 332
              N               + + L  +++ +N +        +   L     L  L L  
Sbjct: 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD 225

Query: 333 NSLSG----SIPSEIGNLKSLSGLELADNELSS----SIPHYLGNLTN--LAAFYLYKNS 382
           N+ +     ++   + +  +L  L L D  LS+    ++      L N  L    L  N 
Sbjct: 226 NTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285

Query: 383 LSGSIPSEIG-----NLKSLSNLDLSENKLS 408
           +       +       +  L  L+L+ N+ S
Sbjct: 286 IELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 51.6 bits (124), Expect = 6e-07
 Identities = 27/191 (14%), Positives = 52/191 (27%), Gaps = 41/191 (21%)

Query: 611 SLIKLILRRNQL----FGQLPSELGSLIQLEYLDLSSNRLSN----SIPRSLGNLVKLHY 662
           S+    L+ + +       + + L     ++ + LS N +       +  ++ +   L  
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 663 LNLSTNQF----------IQEIPIKLEKLIHLSELDLSHNFLGKEIPSQIC----NMRSL 708
              S              ++ +   L K   L  + LS N  G      +         L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 709 EMLNLSHNNLSD-------------FIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDA 755
           E L L +N L                + +  +    L  I    N L             
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL------ENGSMKE 178

Query: 756 LMEALQGNEGL 766
             +  Q +  L
Sbjct: 179 WAKTFQSHRLL 189

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 36/233 (15%), Positives = 75/233 (32%), Gaps = 39/233 (16%)

Query: 107 PHLAYLDLQVNQI--FGIIP--PQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYL 162
           P L  + L  N        P    +   + L++L L +N         +G  +      +
Sbjct: 94  PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN--------GLGPQAG---AKI 142

Query: 163 SANQFSGRIPPQIGHLSYIEALHLFKNQLSGP----IPHEVGGLSSLNELALTSNFL--- 215
           +       +  +  +   + ++   +N+L                 L+ + +  N +   
Sbjct: 143 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 202

Query: 216 --KGSIPPSLGNLTNLAILYLHNNSLSG----SIPSEIGNLKSLSSLALGNNKL----CG 265
             +  +   L     L +L L +N+ +     ++   + +  +L  L L +  L      
Sbjct: 203 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262

Query: 266 SIPLFLGNLTN--LDTLYLRNNSFSSSIPSEIG-----NLKSLSILELGENRL 311
           ++      L N  L TL L+ N         +       +  L  LEL  NR 
Sbjct: 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 45/134 (33%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 323 TNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNS 382
                L L TNSL          L SL+ L L  N+L S        LT+L    L  N 
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 383 LSGSIPSEI-GNLKSLSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLGSIPREI- 439
           L  S+P+ +   L  L  L L+ N+L  S+P  +   LT L  L L+ N  L S+P  + 
Sbjct: 88  LQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVF 144

Query: 440 GNLKSLFELQLGDN 453
             L SL  + L DN
Sbjct: 145 DRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 47/142 (33%), Positives = 65/142 (45%), Gaps = 7/142 (4%)

Query: 386 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGN-LKS 444
           S+P+ I      + LDL  N L          LT+L  LYL  N  L S+P  + N L S
Sbjct: 21  SVPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTS 77

Query: 445 LFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ 504
           L  L L  N+L +  +     LT +  LAL  N L  +       L +L  L L  NQL+
Sbjct: 78  LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137

Query: 505 GSIPN--LRNLTNLIRLRLNRN 524
            S+P+     LT+L  + L+ N
Sbjct: 138 -SVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 52/145 (35%), Positives = 66/145 (45%), Gaps = 12/145 (8%)

Query: 218 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIP--LFLGNLT 275
           S+P   G       L L  NSL          L SL+ L LG NKL  S+P  +F   LT
Sbjct: 21  SVPT--GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVF-NKLT 76

Query: 276 NLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIPLSL-GNLTNLDTLYLYTN 333
           +L  L L  N    S+P+ +   L  L  L L  N+L  S+P  +   LT L  L LY N
Sbjct: 77  SLTYLNLSTNQL-QSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQN 134

Query: 334 SLSGSIPSEI-GNLKSLSGLELADN 357
            L  S+P  +   L SL  + L DN
Sbjct: 135 QLK-SVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 62.0 bits (151), Expect = 6e-11
 Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 8/131 (6%)

Query: 111 YLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGN-LSMLKFLYLSANQFSG 169
           YLDL+ N +  +       ++ L  L L  N    ++P  + N L+ L +L LS NQ   
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ- 89

Query: 170 RIPPQI-GHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPP-SLGNL 226
            +P  +   L+ ++ L L  NQL   +P  V   L+ L +L L  N LK S+P      L
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRL 147

Query: 227 TNLAILYLHNN 237
           T+L  ++LH+N
Sbjct: 148 TSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 45/132 (34%), Positives = 65/132 (49%), Gaps = 8/132 (6%)

Query: 134 KYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQLS 192
            YLDL +NS           L+ L  LYL  N+    +P  +   L+ +  L+L  NQL 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 193 GPIPHEV-GGLSSLNELALTSNFLKGSIPPSL-GNLTNLAILYLHNNSLSGSIPSEI-GN 249
             +P+ V   L+ L ELAL +N L+ S+P  +   LT L  L L+ N L  S+P  +   
Sbjct: 90  S-LPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDR 146

Query: 250 LKSLSSLALGNN 261
           L SL  + L +N
Sbjct: 147 LTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 35/98 (35%), Positives = 41/98 (41%), Gaps = 5/98 (5%)

Query: 432 LGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLV 491
             S+P  I        L L  N L +  +     LT +T L L  N L  +       L 
Sbjct: 19  RTSVPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT 76

Query: 492 KLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLT 527
            LT L LS NQLQ S+PN     LT L  L LN N L 
Sbjct: 77  SLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ 113

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 6/119 (5%)

Query: 602 IPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLH 661
           +P+ I   +    L L  N L          L  L  L L  N+L +        L  L 
Sbjct: 22  VPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLT 79

Query: 662 YLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFLGKEIPSQICN-MRSLEMLNLSHNNL 718
           YLNLSTNQ +Q +P  + +KL  L EL L+ N L + +P  + + +  L+ L L  N L
Sbjct: 80  YLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 41/161 (25%), Positives = 61/161 (37%), Gaps = 32/161 (19%)

Query: 514 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN 573
                L L  N L    +  F     LT + L                           N
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLG-------------------------GN 62

Query: 574 IIGSLPPEIGDS-SQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSEL- 630
            + SLP  + +  + L  ++LS N  +  +P+ +  KL+ L +L L  NQL   LP  + 
Sbjct: 63  KLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQL-QSLPDGVF 120

Query: 631 GSLIQLEYLDLSSNRLSNSIPR-SLGNLVKLHYLNLSTNQF 670
             L QL+ L L  N+L  S+P      L  L Y+ L  N +
Sbjct: 121 DKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNPW 160

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 4/108 (3%)

Query: 637 EYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFLG 695
            YLDL +N L +        L  L  L L  N+ +Q +P  +  KL  L+ L+LS N L 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQL- 88

Query: 696 KEIPSQICN-MRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 742
           + +P+ + + +  L+ L L+ N L       F+++  L  + +  N+L
Sbjct: 89  QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 65.4 bits (160), Expect = 3e-12
 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 5/104 (4%)

Query: 160 LYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSI 219
           LYL  NQF+  +P ++ +  ++  + L  N++S         ++ L  L L+ N L+  I
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CI 93

Query: 220 PPSL-GNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNN 261
           PP     L +L +L LH N +S  +P     +L +LS LA+G N
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 65.4 bits (160), Expect = 3e-12
 Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 7/110 (6%)

Query: 227 TNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFL-GNLTNLDTLYLRNN 285
            ++  LYL  N  +  +P E+ N K L+ + L NN++  ++      N+T L TL L  N
Sbjct: 31  RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYN 88

Query: 286 SFSSSIPSEI-GNLKSLSILELGENRLNGSIPL-SLGNLTNLDTLYLYTN 333
                IP      LKSL +L L  N ++  +P  +  +L+ L  L +  N
Sbjct: 89  RL-RCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 37/106 (34%), Positives = 49/106 (46%), Gaps = 11/106 (10%)

Query: 377 YLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIP 436
           YL  N  +  +P E+ N K L+ +DLS N++S     S  N+T L  L L  N  L  IP
Sbjct: 37  YLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIP 94

Query: 437 REI-GNLKSLFELQLGDNKLSNSISH----SLGNLTHMTLLALYDN 477
                 LKSL  L L  N +S  +       L  L+H   LA+  N
Sbjct: 95  PRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSH---LAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 290 SIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI-GNLKS 348
            +P  I   + ++ L L  N+    +P  L N  +L  + L  N +S ++ ++   N+  
Sbjct: 24  VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQ 79

Query: 349 LSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSEN 405
           L  L L+ N L    P     L +L    L+ N +S  +P     +L +LS+L +  N
Sbjct: 80  LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 428 SNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEEL 487
           SN  L  +P+ I   + + EL L  N+ +  +   L N  H+TL+ L +N +S +  +  
Sbjct: 18  SNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSF 74

Query: 488 GNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHL 526
            N+ +L  L LS N+L+  IP      L +L  L L+ N +
Sbjct: 75  SNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 614 KLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQE 673
           +L L  NQ    +P EL +   L  +DLS+NR+S    +S  N+ +L  L LS N+ ++ 
Sbjct: 35  ELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRC 92

Query: 674 IPIKL-EKLIHLSELDLSHNFLGKEIPSQI-CNMRSLEMLNLSHN 716
           IP +  + L  L  L L  N +   +P     ++ +L  L +  N
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 13/101 (12%)

Query: 470 TLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLT 527
           T L L  N  + ++P+EL N   LT++ LS+N++  ++ N    N+T L+ L L+ N L 
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR 91

Query: 528 CNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFD 568
           C    +F     L  + L  N     IS      P  G F+
Sbjct: 92  CIPPRTFDGLKSLRLLSLHGN----DISV----VPE-GAFN 123

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 61.6 bits (150), Expect = 6e-11
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 9/107 (8%)

Query: 160 LYLSANQFSGRIPPQ--IGHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLK 216
           L L+ N+   RI      G L ++  L L +NQL+G I      G S + EL L  N +K
Sbjct: 34  LLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKIK 91

Query: 217 GSIPPSL-GNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNN 261
             I   +   L  L  L L++N +S  +      +L SL+SL L +N
Sbjct: 92  -EISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 58.1 bits (141), Expect = 9e-10
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 9/111 (8%)

Query: 182 EALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPPSL-GNLTNLAILYLHNNSL 239
             L L  N+L       + G L  L +L L  N L   I P+     +++  L L  N +
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKI 90

Query: 240 SGSIPSEI-GNLKSLSSLALGNNKLCGSIP--LFLGNLTNLDTLYLRNNSF 287
              I +++   L  L +L L +N++   +    F  +L +L +L L +N F
Sbjct: 91  K-EISNKMFLGLHQLKTLNLYDNQI-SCVMPGSF-EHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 58.1 bits (141), Expect = 9e-10
 Identities = 38/128 (29%), Positives = 54/128 (42%), Gaps = 12/128 (9%)

Query: 235 HNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPL--FLGNLTNLDTLYLRNNSFSSSIP 292
               L   IP +I      + L L +N+L G I      G L +L  L L+ N  +  I 
Sbjct: 16  TGRGLK-EIPRDIPL--HTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTG-IE 70

Query: 293 SEI-GNLKSLSILELGENRLNGSIPLSL-GNLTNLDTLYLYTNSLSGSIPSEI-GNLKSL 349
                    +  L+LGEN++   I   +   L  L TL LY N +S  +      +L SL
Sbjct: 71  PNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSL 128

Query: 350 SGLELADN 357
           + L LA N
Sbjct: 129 TSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 6/124 (4%)

Query: 428 SNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSL-GNLTHMTLLALYDNALSGVIPEE 486
           +   L  IPR+I       EL L DN+L    S  L G L H+  L L  N L+G+ P  
Sbjct: 16  TGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA 73

Query: 487 LGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFID 544
                 +  L L +N+++  I N     L  L  L L  N ++C +  SF     LT ++
Sbjct: 74  FEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132

Query: 545 LSHN 548
           L+ N
Sbjct: 133 LASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 5/118 (4%)

Query: 386 SIPSEIGNLKSLSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLGSIPREI-GNLK 443
            IP +I      + L L++N+L       L G L +L  L L  N L   I         
Sbjct: 22  EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL-TGIEPNAFEGAS 78

Query: 444 SLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDN 501
            + ELQLG+NK+    +     L  +  L LYDN +S V+P    +L  LT L L+ N
Sbjct: 79  HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 6/115 (5%)

Query: 419 TNLAILYLHSNTLLGSIPRE--IGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYD 476
            +   L L+ N L G I  +   G L  L +L+L  N+L+    ++    +H+  L L +
Sbjct: 29  LHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87

Query: 477 NALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLTCN 529
           N +  +  +    L +L  L L DNQ+   +      +L +L  L L  N   CN
Sbjct: 88  NKIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPFNCN 141

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 11/113 (9%)

Query: 275 TNLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNGSIPLSL-GNLTNLDTLYLYT 332
            +   L L +N         + G L  L  LEL  N+L   I  +     +++  L L  
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGE 87

Query: 333 NSLSGSIPSEI-GNLKSLSGLELADNELSSSIPHYLG---NLTNLAAFYLYKN 381
           N +   I +++   L  L  L L DN++ S +    G   +L +L +  L  N
Sbjct: 88  NKIK-EISNKMFLGLHQLKTLNLYDNQI-SCVMP--GSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 7/107 (6%)

Query: 614 KLILRRNQLFGQLPSE--LGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFI 671
           +L+L  N+L G++ S+   G L  L  L+L  N+L+   P +      +  L L  N+ I
Sbjct: 33  ELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-I 90

Query: 672 QEIPIKL-EKLIHLSELDLSHNFLGKEIPSQIC-NMRSLEMLNLSHN 716
           +EI  K+   L  L  L+L  N +   +      ++ SL  LNL+ N
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQI-SCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 7/120 (5%)

Query: 289 SSIPSEIGNLKSLSILELGENRLNGSIPLSL-GNLTNLDTLYLYTNSLSGSIPSEI-GNL 346
             IP +I      + L L +N L       L G L +L  L L  N L+  I        
Sbjct: 21  KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGA 77

Query: 347 KSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSEN 405
             +  L+L +N++          L  L    LY N +S  +      +L SL++L+L+ N
Sbjct: 78  SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 8/104 (7%)

Query: 572 NNIIGSLPPE--IGDSSQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPS 628
           +N +G +  +   G    L  ++L  N +   I        S + +L L  N++  ++ +
Sbjct: 38  DNELGRISSDGLFGRLPHLVKLELKRNQL-TGIEPNAFEGASHIQELQLGENKI-KEISN 95

Query: 629 EL-GSLIQLEYLDLSSNRLSNSIPR-SLGNLVKLHYLNLSTNQF 670
           ++   L QL+ L+L  N++S  +   S  +L  L  LNL++N F
Sbjct: 96  KMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 103 FSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLY 161
           F   PHL  L+L+ NQ+ GI P      S ++ L L  N     I  ++   L  LK L 
Sbjct: 50  FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLN 108

Query: 162 LSANQFSGRIPPQI-GHLSYIEALHLFKN 189
           L  NQ S  + P    HL+ + +L+L  N
Sbjct: 109 LYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 63.6 bits (154), Expect = 8e-11
 Identities = 25/125 (20%), Positives = 39/125 (31%), Gaps = 23/125 (18%)

Query: 405 NKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLG 464
              +    H L    NL  LY+ +   L  +                           L 
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELR-----------------------DLR 53

Query: 465 NLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRN 524
            L  +  L +  + L  V P+      +L+ L LS N L+          +L  L L+ N
Sbjct: 54  GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

Query: 525 HLTCN 529
            L C+
Sbjct: 114 PLHCS 118

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 61.3 bits (148), Expect = 4e-10
 Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 2/100 (2%)

Query: 357 NELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSE-IGNLKSLSNLDLSENKLSGSIPHSL 415
            + +    H+L    NL   Y+        +    +  L  L NL + ++ L    P + 
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 416 GNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKL 455
                L+ L L  N  L S+  +     SL EL L  N L
Sbjct: 77  HFTPRLSRLNLSFN-ALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 60.5 bits (146), Expect = 8e-10
 Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 4/97 (4%)

Query: 218 SIPPSLGNLTNLAILYLHNNSLSGSIPSE-IGNLKSLSSLALGNNKLCGSIPLF-LGNLT 275
                L    NL  LY+ N      +    +  L  L +L +  + L   +         
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-RFVAPDAFHFTP 80

Query: 276 NLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLN 312
            L  L L  N+   S+  +     SL  L L  N L+
Sbjct: 81  RLSRLNLSFNAL-ESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 60.5 bits (146), Expect = 9e-10
 Identities = 27/130 (20%), Positives = 43/130 (33%), Gaps = 7/130 (5%)

Query: 602 IPSEIGKLSSLIKLILRRNQLFGQLPSE-LGSLIQLEYLDLSSNRLSNSIPRSLGNLVKL 660
               +    +L +L +   Q    L    L  L +L  L +  + L    P +     +L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 661 HYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSD 720
             LNLS N  ++ +  K  + + L EL LS N L        C +R L+           
Sbjct: 83  SRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPL-----HCSCALRWLQRWEEEGLGGVP 136

Query: 721 FIPRCFEEMN 730
                     
Sbjct: 137 EQKLQCHGQG 146

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 58.6 bits (141), Expect = 4e-09
 Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 2/101 (1%)

Query: 260 NNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSE-IGNLKSLSILELGENRLNGSIPLS 318
                      L    NL  LY+ N      +    +  L  L  L + ++ L    P +
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 319 LGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNEL 359
                 L  L L  N+L  S+  +     SL  L L+ N L
Sbjct: 76  FHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 56.3 bits (135), Expect = 2e-08
 Identities = 22/100 (22%), Positives = 31/100 (31%), Gaps = 2/100 (2%)

Query: 309 NRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSE-IGNLKSLSGLELADNELSSSIPHYL 367
                     L    NL  LY+        +    +  L  L  L +  + L    P   
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 368 GNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKL 407
                L+   L  N+L  S+  +     SL  L LS N L
Sbjct: 77  HFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.9 bits (134), Expect = 3e-08
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 577 SLPPEIGDSSQLHVIDLSANHIIGKIPSE-IGKLSSLIKLILRRNQLFGQLPSELGSLIQ 635
                +  +  L  + +     +  +    +  L  L  L + ++ L    P       +
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 636 LEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQF 670
           L  L+LS N L  S+       + L  L LS N  
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.5 bits (133), Expect = 3e-08
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 2/95 (2%)

Query: 146 TIPPQIGNLSMLKFLYLSANQFSGRIPPQ-IGHLSYIEALHLFKNQLSGPIPHEVGGLSS 204
                +     L  LY+   Q    +  + +  L  +  L + K+ L    P        
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 205 LNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSL 239
           L+ L L+ N L+ S+        +L  L L  N L
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.5 bits (133), Expect = 3e-08
 Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 4/102 (3%)

Query: 332 TNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHY-LGNLTNLAAFYLYKNSLSGSIPSE 390
           T   +      +   ++L+ L + + +    +    L  L  L    + K+ L   +  +
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPD 74

Query: 391 I-GNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTL 431
                  LS L+LS N L  S+        +L  L L  N L
Sbjct: 75  AFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.2 bits (127), Expect = 2e-07
 Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 3/97 (3%)

Query: 673 EIPIKLEKLIHLSELDLSHNFLGKEIPSQ-ICNMRSLEMLNLSHNNLSDFIPRCFEEMNG 731
           +    L    +L+EL + +    + +  + +  +  L  L +  + L    P  F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 732 LLYIDISYNELHGPIPNSTAFSDALME-ALQGNEGLC 767
           L  +++S+N L   +   T    +L E  L GN   C
Sbjct: 82  LSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.4 bits (125), Expect = 3e-07
 Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 4/102 (3%)

Query: 236 NNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLF-LGNLTNLDTLYLRNNSFSSSIPSE 294
               +      +   ++L+ L + N +    + L  L  L  L  L +  +     +  +
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-RFVAPD 74

Query: 295 I-GNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSL 335
                  LS L L  N L  S+        +L  L L  N L
Sbjct: 75  AFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 8e-05
 Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 14/110 (12%)

Query: 71  CAWF-GIHCNHVGRVNSI-------NLTNVGLKG-----TLHDFSFSSFPHLAYLDLQVN 117
                G+ C   G ++S+       NLT + ++       L          L  L +  +
Sbjct: 7   PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 118 QIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQF 167
            +  + P       +L  L+LS N+        +  LS L+ L LS N  
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 5e-04
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 4/102 (3%)

Query: 499 SDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNI-SESFGIHPKLTFIDLSHNNFYGQISSD 557
           + +    S+ +L    NL  L +       ++         +L  + +  +     ++ D
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-RFVAPD 74

Query: 558 -WGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHI 598
            +   P L   ++S  N + SL  +      L  + LS N +
Sbjct: 75  AFHFTPRLSRLNLS-FNALESLSWKTVQGLSLQELVLSGNPL 115

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 63.8 bits (155), Expect = 1e-10
 Identities = 71/485 (14%), Positives = 152/485 (31%), Gaps = 56/485 (11%)

Query: 279 TLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGS 338
           T+ L   +    +     NL+SL         L G    ++ NL   +     T  ++  
Sbjct: 56  TMALCYTATPDRLSRRFPNLRSLK--------LKGKPRAAMFNLIPENWGGYVTPWVT-E 106

Query: 339 IPSEIGNLKSL--SGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKS 396
           I + +  LKS+    + ++D +L         +L  L        +  G + S + + + 
Sbjct: 107 ISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDG-LLSIVTHCRK 165

Query: 397 LSNLDLSENKLSGSIPHSLG----NLTNLAILYLHSNTLLG----SIPREIGNLKSLFEL 448
           +  L + E+  S      L     + T+L +L  +           +     N +SL  +
Sbjct: 166 IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225

Query: 449 QLGDNKLSN--SISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGS 506
           ++GD ++        +  NL      +L ++         L    KL  L LS       
Sbjct: 226 KVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM 285

Query: 507 IPNLRNLTNLIRLRLNR-NHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLG 565
                    + +L L      T +        P L  ++  +      +      C  L 
Sbjct: 286 PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLK 345

Query: 566 TFDVSVNNIIGSLPPE---IGDSS---------QLHVIDLSANHI----IGKIPSEIGKL 609
              +        +  E   +             +L  + +  + I    +  I + +  L
Sbjct: 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNL 405

Query: 610 SSLIKLILRRNQLFGQLPSELG------SLIQLEYLDLSSN--RLSNSIPRSLG-NLVKL 660
                ++L R +    LP + G         +L           L++     +G     +
Sbjct: 406 CDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNV 465

Query: 661 HYLNLS----TNQFIQEIPIKLEKLIHLSELDLSHNFLG-KEIPSQICNMRSLEMLNLSH 715
            ++ L     +++ + E         +L +L++       + I + +  + SL  L +  
Sbjct: 466 RWMLLGYVGESDEGLMEF---SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG 522

Query: 716 NNLSD 720
              S 
Sbjct: 523 YRASM 527

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 18/157 (11%)

Query: 400 LDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSI 459
           L      +   +  +L  L     L L +N  +  I   +  +++L  L LG N +   I
Sbjct: 30  LHGMIPPIEK-MDATLSTLKACKHLALSTN-NIEKI-SSLSGMENLRILSLGRNLIK-KI 85

Query: 460 SHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ--GSIPNLRNLTNLI 517
            +       +  L +  N ++ +    +  LV L +L +S+N++   G I  L  L  L 
Sbjct: 86  ENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143

Query: 518 RLRLNRNHLTCNISESFGIH----------PKLTFID 544
            L L  N L  +  E+              P L  +D
Sbjct: 144 DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 58.5 bits (142), Expect = 7e-10
 Identities = 31/150 (20%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 186 LFKNQLSGPIPHEVGGLSSLNELALTSNFLK-GSIPPSLGNLTNLAILYLHNNSLSGSIP 244
             K+ +      +    +   ++ L         +  +L  L     L L  N++   I 
Sbjct: 6   TIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KI- 63

Query: 245 SEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSIL 304
           S +  +++L  L+LG N +   I         L+ L++  N  +S   S I  L +L +L
Sbjct: 64  SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS--LSGIEKLVNLRVL 120

Query: 305 ELGENRLNGSIPLS-LGNLTNLDTLYLYTN 333
            +  N++     +  L  L  L+ L L  N
Sbjct: 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 58.2 bits (141), Expect = 9e-10
 Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 9/143 (6%)

Query: 581 EIGDSSQLHVIDLSANHI-IGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYL 639
           +   +++   ++L      I K+ + +  L +   L L  N +  +  S L  +  L  L
Sbjct: 18  KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI--EKISSLSGMENLRIL 75

Query: 640 DLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLG--KE 697
            L  N +   I         L  L +S NQ I  +   +EKL++L  L +S+N +    E
Sbjct: 76  SLGRNLIK-KIENLDAVADTLEELWISYNQ-IASLS-GIEKLVNLRVLYMSNNKITNWGE 132

Query: 698 IPSQICNMRSLEMLNLSHNNLSD 720
           I  ++  +  LE L L+ N L +
Sbjct: 133 I-DKLAALDKLEDLLLAGNPLYN 154

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 6/110 (5%)

Query: 612 LIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFI 671
            ++L      +   + + L +L   ++L LS+N +   I  SL  +  L  L+L  N  I
Sbjct: 27  KVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNL-I 82

Query: 672 QEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDF 721
           ++I         L EL +S+N +     S I  + +L +L +S+N ++++
Sbjct: 83  KKIENLDAVADTLEELWISYNQIAS--LSGIEKLVNLRVLYMSNNKITNW 130

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 14/145 (9%)

Query: 293 SEIGNLKSLSILELGENRLNGS------IPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNL 346
                 KS+   E  +  L+G       +  +L  L     L L TN++   I S +  +
Sbjct: 12  RIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KI-SSLSGM 69

Query: 347 KSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENK 406
           ++L  L L  N +   I +       L   ++  N ++ S+ S I  L +L  L +S NK
Sbjct: 70  ENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNK 126

Query: 407 LS--GSIPHSLGNLTNLAILYLHSN 429
           ++  G I   L  L  L  L L  N
Sbjct: 127 ITNWGEIDK-LAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 9/128 (7%)

Query: 112 LDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRI 171
           L   +  I  +    +  +   K+L LS+N+    I   +  +  L+ L L  N    +I
Sbjct: 30  LHGMIPPIEKM-DATLSTLKACKHLALSTNNIE-KISS-LSGMENLRILSLGRNLIK-KI 85

Query: 172 PPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLK--GSIPPSLGNLTNL 229
                    +E L +  NQ++      +  L +L  L +++N +   G I   L  L  L
Sbjct: 86  ENLDAVADTLEELWISYNQIA--SLSGIEKLVNLRVLYMSNNKITNWGEIDK-LAALDKL 142

Query: 230 AILYLHNN 237
             L L  N
Sbjct: 143 EDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 39/192 (20%), Positives = 61/192 (31%), Gaps = 32/192 (16%)

Query: 469 MTLLALYDNALSGVIPEELGNLVKLTMLTL--SDNQLQGSIPNLRNLTNLIRLRLNRNHL 526
           M       +A+      +     +   + L      ++     L  L     L L+ N++
Sbjct: 1   MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI 60

Query: 527 TCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNI-----IGSLPPE 581
              I  S      L  + L  N    +I +       L    +S N I     I  L   
Sbjct: 61  E-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSGIEKLV-- 115

Query: 582 IGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKL---ILRRNQLFGQLPSE--------- 629
                 L V+ +S N I      EI KL++L KL   +L  N L+               
Sbjct: 116 -----NLRVLYMSNNKI--TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168

Query: 630 -LGSLIQLEYLD 640
            +  L  L+ LD
Sbjct: 169 VVKRLPNLKKLD 180

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.9 bits (152), Expect = 4e-10
 Identities = 83/569 (14%), Positives = 158/569 (27%), Gaps = 180/569 (31%)

Query: 158 KFLYLS-ANQFSGRIPPQIGHLSYIEALH----LFKNQLSGPIPHEVGGL-SSLNELALT 211
           KFL      +          ++   + L+    +F  + +         L  +L EL   
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA-KYNVSRLQPYLKLRQALLELRPA 150

Query: 212 SNFL----KGSIPPSLGNLTNLAILYLHNNSLSGSIPSEI-----GNLKSLSSLALGNNK 262
            N L     GS     G  T +A+    +  +   +  +I      N  S  ++     K
Sbjct: 151 KNVLIDGVLGS-----GK-TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204

Query: 263 LCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKS-LSILELGENRLNGSIPLSLGN 321
           L             +D  +   +  SS+I   I ++++ L  L L        + L L N
Sbjct: 205 LL----------YQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCL-LVLLN 252

Query: 322 LTNLDTL--------YLYT-------NSLSGSIPSEIGNLKSLSGLELADNELSSSIPHY 366
           + N             L T       + LS +  + I        L   + +        
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK-------- 304

Query: 367 LGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYL 426
                +L   YL                      DL    L+ + P          +   
Sbjct: 305 -----SLLLKYL-----------------DCRPQDLPREVLTTN-P--------RRL--- 330

Query: 427 HSNTLLGSIPREIGNLKSLFE--LQLGDNKLSNSISHSLGNLTHMTLLALYDNALS---- 480
                   I   I +  + ++    +  +KL+  I  SL  L       ++D  LS    
Sbjct: 331 ------SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD-RLSVFPP 383

Query: 481 GV-IPEE-----------------LGNLVKLTMLTLSDNQLQGSIPNL-----RNLTNLI 517
              IP                   +  L K +++     +   SIP++       L N  
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 518 RL--------RLNRN---------------------HL-TCNISESFGIHPKLTFIDLSH 547
            L         + +                      HL      E   +   + F+D   
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV-FLDF-- 500

Query: 548 NNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIG 607
             F  Q      K  +  T      N  GS+   +        +     +I    P    
Sbjct: 501 -RFLEQ------KIRHDST----AWNASGSILNTLQQ------LKFYKPYICDNDPKYER 543

Query: 608 KLSSLIKLILRRNQLFGQLPSELGSLIQL 636
            +++++  + +  +    + S+   L+++
Sbjct: 544 LVNAILDFLPKIEENL--ICSKYTDLLRI 570

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.2 bits (150), Expect = 6e-10
 Identities = 69/523 (13%), Positives = 145/523 (27%), Gaps = 170/523 (32%)

Query: 434 SIPRE--IGNLKS-LFELQLGDNKLSNSISHSLGNL--THMTLLALYDNAL-----SGV- 482
           ++ R      L+  L EL+   N     +   +     T + L       +       + 
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKN----VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Query: 483 ------------IPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNR-----NH 525
                       + E L  L  L  +  +         N++   + I+  L R      +
Sbjct: 186 WLNLKNCNSPETVLEMLQKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 526 LTC----------NISESFGIHPK--LTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN 573
             C              +F +  K  LT       +F               T  +S+++
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS----------AATTTHISLDH 293

Query: 574 IIGSLPPEIGDSSQLHVIDLS--ANHIIGKIPSEIGKLSSL-IKLILRRNQLFGQLPSEL 630
              +L P+  +   L    L    +     +P E+   +   + +I        +   + 
Sbjct: 294 HSMTLTPD--EVKSL----LLKYLDCRPQDLPREVLTTNPRRLSII-------AESIRDG 340

Query: 631 GSLIQLEYLDLSSNRLSNSIPRSLGNL----VKLHYLNLSTNQFIQEIPIKLEKLIHL-S 685
            +     +  ++ ++L+  I  SL  L     +  +  LS   F     I    L  +  
Sbjct: 341 LATWD-NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAHIPTILLSLIWF 397

Query: 686 ELDLSHNFLGKEIPSQICN-MRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHG 744
           ++        K     + N +    ++       +  IP         +Y++     L  
Sbjct: 398 DVI-------KSDVMVVVNKLHKYSLVEKQPKESTISIP--------SIYLE-----LKV 437

Query: 745 PIPNSTAFSDALMEALQGNEGLCGDIKGFQSCKASKSHKPASRKIWVVIVFPLLG---TV 801
            + N  A   ++++     +    D              P   + +    +  +G     
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSD----------DLIPPYLDQYF----YSHIGHHLKN 483

Query: 802 ALLISLIALF------FIFRRRK---------------NALQTLQ--------SSPRGTR 832
                 + LF      F F  +K               N LQ L+        + P+  R
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543

Query: 833 GFLSVLTF-----------------------EGKIVYEEIIRQ 852
              ++L F                       E + ++EE  +Q
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 3e-04
 Identities = 51/351 (14%), Positives = 103/351 (29%), Gaps = 93/351 (26%)

Query: 610 SSLIKLILRRNQLFGQLPSELGSLIQLEYLDL--------SSNRLSNSIPRSLGNLVKL- 660
               K  + R Q + +L   L  L   + + +        +   ++  +  S     K+ 
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW--VALDVCLSYKVQCKMD 181

Query: 661 ---HYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLE------ML 711
               +LNL      + +   L+KL++  ++D +         +    + S++      + 
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLY--QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 712 NLSHNN----LSD---------FIPRC-----------FEEMNGLLYIDISYNELHGPIP 747
           +  + N    L +         F   C            + ++      IS +     + 
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 748 NSTA---FSDAL--------MEALQGNEGLCGDIKGFQSCKASKSHKPASRKIWVVIVFP 796
                      L         E L  N      I        S     A+   W  +   
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII------AESIRDGLATWDNWKHVNCD 353

Query: 797 LLGTVALLISLIAL-----------FFIFRRRKNALQTLQSSPRGTRGFLSVLTFEGKIV 845
            L T+ +  SL  L             +F    +A              LS++ F+  ++
Sbjct: 354 KLTTI-IESSLNVLEPAEYRKMFDRLSVF--PPSAHIPTIL--------LSLIWFD--VI 400

Query: 846 YEEIIRQRMV--LMMSTALEKVDKEVYTKL--IYLLEKSLQSRNFIRHSQV 892
             ++    +V  L   + +EK  KE    +  IYL  K      +  H  +
Sbjct: 401 KSDV--MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 58.4 bits (142), Expect = 5e-10
 Identities = 42/119 (35%), Positives = 59/119 (49%), Gaps = 8/119 (6%)

Query: 338 SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKS 396
           S+P+ I +  S + LEL  N+L S        LT L    L +N +  S+P  +   L  
Sbjct: 21  SVPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTK 77

Query: 397 LSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDN 453
           L+ L L ENKL  S+P+ +   LT L  L L +N  L S+P  I   L SL ++ L  N
Sbjct: 78  LTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 55.0 bits (133), Expect = 7e-09
 Identities = 37/119 (31%), Positives = 51/119 (42%), Gaps = 6/119 (5%)

Query: 386 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKS 444
           S+P+ I +  S + L+L  NKL          LT L  L L  N +  S+P  +   L  
Sbjct: 21  SVPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTK 77

Query: 445 LFELQLGDNKLSNSISHSL-GNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQ 502
           L  L L +NKL  S+ + +   LT +  LAL  N L  V       L  L  + L  N 
Sbjct: 78  LTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 55.0 bits (133), Expect = 8e-09
 Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 6/110 (5%)

Query: 275 TNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSL-GNLTNLDTLYLYTN 333
           ++   L L +N   S        L  L+ L L +N++  S+P  +   LT L  LYL+ N
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHEN 86

Query: 334 SLSGSIPSEI-GNLKSLSGLELADNELSSSIPH-YLGNLTNLAAFYLYKN 381
            L  S+P+ +   L  L  L L  N+L  S+P      LT+L   +L+ N
Sbjct: 87  KLQ-SLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 35/103 (33%), Positives = 46/103 (44%), Gaps = 3/103 (2%)

Query: 448 LQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSI 507
           L+L  NKL +        LT +T L+L  N +  +       L KLT+L L +N+LQ S+
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SL 91

Query: 508 PN--LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHN 548
           PN     LT L  L L+ N L       F     L  I L  N
Sbjct: 92  PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 6/107 (5%)

Query: 158 KFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLK 216
             L L +N+           L+ +  L L +NQ+   +P  V   L+ L  L L  N L+
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHENKLQ 89

Query: 217 GSIPPSL-GNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNN 261
            S+P  +   LT L  L L  N L  S+P  I   L SL  + L  N
Sbjct: 90  -SLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 38/117 (32%), Positives = 53/117 (45%), Gaps = 6/117 (5%)

Query: 602 IPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLH 661
           +P+ I   SS  +L L  N+L          L QL  L LS N++ +        L KL 
Sbjct: 22  VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT 79

Query: 662 YLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFLGKEIPSQIC-NMRSLEMLNLSHN 716
            L L  N+  Q +P  + +KL  L EL L  N L K +P  I   + SL+ + L  N
Sbjct: 80  ILYLHENKL-QSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 37/106 (34%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 208 LALTSNFLKGSIPPSL-GNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCG 265
           L L SN L+ S+P  +   LT L  L L  N +  S+P  +   L  L+ L L  NKL  
Sbjct: 33  LELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKL-Q 89

Query: 266 SIP--LFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGEN 309
           S+P  +F   LT L  L L  N   S        L SL  + L  N
Sbjct: 90  SLPNGVF-DKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 3/108 (2%)

Query: 419 TNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNA 478
           ++   L L SN L          L  L +L L  N++ +        LT +T+L L++N 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87

Query: 479 LSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRN 524
           L  +       L +L  L L  NQL+ S+P+     LT+L ++ L+ N
Sbjct: 88  LQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 8/108 (7%)

Query: 134 KYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQL 191
             L+L SN    ++P  +   L+ L  L LS NQ    +P  +   L+ +  L+L +N+L
Sbjct: 31  TRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKL 88

Query: 192 SGPIPHEV-GGLSSLNELALTSNFLKGSIPP-SLGNLTNLAILYLHNN 237
              +P+ V   L+ L ELAL +N LK S+P      LT+L  ++LH N
Sbjct: 89  QS-LPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.0 bits (102), Expect = 9e-05
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 637 EYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFLG 695
             L+L SN+L +        L +L  L+LS NQ IQ +P  + +KL  L+ L L  N L 
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKL- 88

Query: 696 KEIPSQIC-NMRSLEMLNLSHNNL 718
           + +P+ +   +  L+ L L  N L
Sbjct: 89  QSLPNGVFDKLTQLKELALDTNQL 112

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 470 TLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRNHLT 527
           T L L  N L  +       L +LT L+LS NQ+Q S+P+     LT L  L L+ N L 
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ 89

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 62/355 (17%), Positives = 105/355 (29%), Gaps = 71/355 (20%)

Query: 393 NLKSLSNLDLSENKLSGSIPHSLG-----NLTNLAILYLHSNTLLGSIPREIG-----NL 442
               +++LDLS N L       L         ++  L L  N+L      E+        
Sbjct: 20  IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79

Query: 443 KSLFELQLGDNKLSNSISHSLGNL-----THMTLLALYDNALSGVIPEELGNLVK----- 492
            ++  L L  N LS   S  L          +T+L L  N  S     E           
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139

Query: 493 LTMLTLSDNQLQGS-----IPNLRNL-TNLIRLRLNRNHLTCN----ISESF-GIHPKLT 541
           +T L L  N L        I  L  +  N+  L L  N+L       +++    I   +T
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVT 199

Query: 542 FIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGK 601
            +DLS N                     S   +           + +  ++L  N + G 
Sbjct: 200 SLDLSANLLG----------------LKSYAELAYIFS---SIPNHVVSLNLCLNCLHGP 240

Query: 602 IPSEIGKL----SSLIKLILRRNQL-------FGQLPSELGSLIQLEYLDLSSNRLSNSI 650
               +  L      L  + L  + +          L +   ++ ++  +D +   +  S 
Sbjct: 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300

Query: 651 PRSLGNLVK-----LHYLNLSTNQFI-----QEIPIKLEKLIHLSELDLSHNFLG 695
              + NL++         +L     I     Q     L     L E   +   L 
Sbjct: 301 SIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 54.3 bits (131), Expect = 7e-08
 Identities = 55/299 (18%), Positives = 101/299 (33%), Gaps = 61/299 (20%)

Query: 487 LGNLVKLTMLTLSDNQLQGS-----IPNLR-NLTNLIRLRLNRNHLTCNISESFG----- 535
                 +T L LS N L        I        ++  L L+ N L    S+        
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 536 IHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSA 595
           I   +T ++LS N                     S + ++ +L         + V+DL  
Sbjct: 78  IPANVTSLNLSGNFLS----------------YKSSDELVKTLA---AIPFTITVLDLGW 118

Query: 596 NHIIGKIPSEIGKL-----SSLIKLILRRNQLFGQLPSELGSLIQ-----LEYLDLSSNR 645
           N    K  SE  +      +S+  L LR N L  +   EL  ++      +  L+L  N 
Sbjct: 119 NDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178

Query: 646 LSNSIPRSLGNLVK-----LHYLNLSTNQF----IQEIPIKLEKL-IHLSELDLSHNFLG 695
           L++     L   +      +  L+LS N        E+      +  H+  L+L  N L 
Sbjct: 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238

Query: 696 KEIPSQICNM----RSLEMLNLSHNNLSDFIPRC-------FEEMNGLLYIDISYNELH 743
                 +  +    + L+ + L ++ + +            F  +  ++ +D +  E+H
Sbjct: 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 54.3 bits (131), Expect = 9e-08
 Identities = 55/327 (16%), Positives = 106/327 (32%), Gaps = 66/327 (20%)

Query: 441 NLKSLFELQLGDNKLSNSISHSLG-----NLTHMTLLALYDNALSGVIPEELGNLVK--- 492
               +  L L  N L +  +  L          +T L L  N+L     +EL  ++    
Sbjct: 20  IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79

Query: 493 --LTMLTLSDNQL-QGSIPNL-----RNLTNLIRLRLNRNHLT----CNISESF-GIHPK 539
             +T L LS N L   S   L          +  L L  N  +        ++F  +   
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139

Query: 540 LTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHII 599
           +T ++L  N+                    S + +I  L       + ++ ++L  N++ 
Sbjct: 140 ITSLNLRGNDLG----------------IKSSDELIQILA---AIPANVNSLNLRGNNLA 180

Query: 600 GKIPSEIGKL-----SSLIKLILRRNQLFGQLPSELGSLIQ-----LEYLDLSSNRLSNS 649
            K  +E+ K      +S+  L L  N L  +  +EL  +       +  L+L  N L   
Sbjct: 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240

Query: 650 IPRSLGNLVK----LHYLNLSTNQF-------IQEIPIKLEKLIHLSELDLSHNFLGKEI 698
              +L  L      L  + L  +          + +      +  +  +D +   +    
Sbjct: 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300

Query: 699 PSQICNM-----RSLEMLNLSHNNLSD 720
              I N+        ++ +L +  L  
Sbjct: 301 SIPISNLIRELSGKADVPSLLNQCLIF 327

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 59/341 (17%), Positives = 112/341 (32%), Gaps = 62/341 (18%)

Query: 223 LGNLTNLAILYLHNNSLSGSIPSEIG-----NLKSLSSLALGNNKL----CGSIPLFL-G 272
                 +  L L  N+L      E+         S++SL L  N L       +   L  
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 273 NLTNLDTLYLRNNSFSSSIPSEIGNL-----KSLSILELGENRL--NGSIPLS---LGNL 322
              N+ +L L  N  S     E+         ++++L+LG N      S           
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 323 TNLDTLYLYTNSLSGSIPSEIGNL-----KSLSGLELADN--------ELSSSIPHYLGN 369
            ++ +L L  N L      E+  +      +++ L L  N        EL+  +     +
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197

Query: 370 LTNLAAFYLYKNSLSGSIPSEIG-----NLKSLSNLDLSENKLSGS----IPHSLGNLTN 420
           +T+L    L  N L     +E+          + +L+L  N L G     +     +L +
Sbjct: 198 VTSL---DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH 254

Query: 421 LAILYLHSNTL-------LGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNL-----TH 468
           L  +YL  + +         ++     N++ +  +     ++  S S  + NL       
Sbjct: 255 LQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGK 314

Query: 469 MTLLALYDNALSGV-----IPEELGNLVKLTMLTLSDNQLQ 504
             + +L +  L          E+L    +L     +   L 
Sbjct: 315 ADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 58/352 (16%), Positives = 110/352 (31%), Gaps = 70/352 (19%)

Query: 107 PHLAYLDLQVNQIFGIIPPQIG-----NISKLKYLDLSSNSFSGTIPPQIG-----NLSM 156
             +  LDL +N ++ I   ++        + +  L+LS NS       ++        + 
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 157 LKFLYLSANQFSGRIPPQIGHL-----SYIEALHLFKNQLSGPIPHEVGGLSSLNELALT 211
           +  L LS N  S +   ++          I  L L  N  S          S   +    
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS------KSSSEFKQAFSN 135

Query: 212 SNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNL-----KSLSSLALGNNKL--- 263
                           ++  L L  N L      E+  +      +++SL L  N L   
Sbjct: 136 LP-------------ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182

Query: 264 -CGSIPLFLGNL-TNLDTLYLRNNSFSSSIPSEIG-----NLKSLSILELGENRLNGS-- 314
            C  +  FL ++  ++ +L L  N       +E+          +  L L  N L+G   
Sbjct: 183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242

Query: 315 --IPLSLGNLTNLDTLYLYTNSLSG-------SIPSEIGNLKSLSGLELADNELSSSIPH 365
             + L   +L +L T+YL  + +         ++ +   N++ +  ++    E+  S   
Sbjct: 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302

Query: 366 YLGNLTNLAAFYLYKNSLSGSIPSEIG----------NLKSLSNLDLSENKL 407
            + NL    +      SL                       L     +   L
Sbjct: 303 PISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 52/276 (18%), Positives = 98/276 (35%), Gaps = 42/276 (15%)

Query: 530 ISESFGIHPKLTFIDLSHNNFYGQ----ISSDWGKCP-NLGTFDVSVNNIIGSLPPEIGD 584
           + E   I   +T +DLS NN Y      +   +   P ++ + ++S N++      E+  
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 585 -----SSQLHVIDLSANHIIGKIPSEIGKL-----SSLIKLILRRNQLFGQLPSELGSLI 634
                 + +  ++LS N +  K   E+ K       ++  L L  N    +  SE     
Sbjct: 74  ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 635 Q-----LEYLDLSSNRLSNSIPRSLGNLVK-----LHYLNLSTNQF----IQEIPIKLEK 680
                 +  L+L  N L       L  ++      ++ LNL  N        E+   L  
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLAS 193

Query: 681 L-IHLSELDLSHNFLGKEIPSQIC-----NMRSLEMLNLSHNNLSD----FIPRCFEEMN 730
           +   ++ LDLS N LG +  +++          +  LNL  N L       +    + + 
Sbjct: 194 IPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK 253

Query: 731 GLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGL 766
            L  + + Y+ +            AL  A    + +
Sbjct: 254 HLQTVYLDYDIVKNMSKEQCK---ALGAAFPNIQKI 286

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 50/293 (17%), Positives = 100/293 (34%), Gaps = 46/293 (15%)

Query: 258 LGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIG-----NLKSLSILELGENRL- 311
           L  +     +  F      + +L L  N+  S    E+         S++ L L  N L 
Sbjct: 5   LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG 64

Query: 312 -NGSIPLS---LGNLTNLDTLYLYTNSLSGSIPSEIGNL-----KSLSGLELADNELSSS 362
              S  L         N+ +L L  N LS     E+         +++ L+L  N+ SS 
Sbjct: 65  FKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK 124

Query: 363 IPHYLGNL-----TNLAAFYLYKNSLSGSIPSEIGNL-----KSLSNLDLSENKLS---- 408
                         ++ +  L  N L      E+  +      ++++L+L  N L+    
Sbjct: 125 SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNC 184

Query: 409 GSIPHSLGNL-TNLAILYLHSNTLLGSIPREIG-----NLKSLFELQLGDNKLSNS---- 458
             +   L ++  ++  L L +N L      E+          +  L L  N L       
Sbjct: 185 AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLEN 244

Query: 459 ISHSLGNLTHMTLLALYDNALSGVIPEE-------LGNLVKLTMLTLSDNQLQ 504
           +     +L H+  + L  + +  +  E+         N+ K+ ++  +  ++ 
Sbjct: 245 LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 63/369 (17%), Positives = 117/369 (31%), Gaps = 80/369 (21%)

Query: 131 SKLKYLDLSSNSFSGTIPPQIG-----NLSMLKFLYLSANQFSGRIPPQIGHL-----SY 180
             +  LDLS N+       ++        + +  L LS N    +   ++  +     + 
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 181 IEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLS 240
           + +L+L  N LS            L +                     + +L L  N  S
Sbjct: 82  VTSLNLSGNFLS------YKSSDELVKTLAAIP-------------FTITVLDLGWNDFS 122

Query: 241 GSIPSEIGNL-----KSLSSLALGNNKLC--GSIPL---FLGNLTNLDTLYLRNNSFSSS 290
               SE          S++SL L  N L    S  L         N+++L LR N+ +S 
Sbjct: 123 SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182

Query: 291 IPSEIGNL-----KSLSILELGENRLN--GSIPLS---LGNLTNLDTLYLYTNSLSGSIP 340
             +E+         S++ L+L  N L       L+        ++ +L L  N L G   
Sbjct: 183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242

Query: 341 SEIGNL----KSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKS 396
             +  L    K L  + L  + +         N++      L          +   N++ 
Sbjct: 243 ENLKLLKDSLKHLQTVYLDYDIV--------KNMSKEQCKALG---------AAFPNIQK 285

Query: 397 LSNLDLSENKLSGSIPHSLGNL-----TNLAILYLHSNTLL-----GSIPREIGNLKSLF 446
           +  +D +  ++  S    + NL         +  L +  L+      +   ++     L 
Sbjct: 286 IILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELR 345

Query: 447 ELQLGDNKL 455
           E       L
Sbjct: 346 ESIQTCKPL 354

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 57.6 bits (139), Expect = 1e-08
 Identities = 72/538 (13%), Positives = 167/538 (31%), Gaps = 55/538 (10%)

Query: 225 NLTNLAILYLHNNSLSGSIPSEIGNL------------KSLSSLALGNNKLC-GSIPLFL 271
            + ++ +    + +    +P   G                L  + L    +    + L  
Sbjct: 67  KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIA 126

Query: 272 GNLTNLDTLYLRN-NSFSSSIPSEIG-NLKSLSILELGENRLNG-------SIPLSLGNL 322
            +  N   L L +   FS+   + I    ++L  L+L E+ ++          P +  +L
Sbjct: 127 KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSL 186

Query: 323 TNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNS 382
            +L+   L +     ++   +    +L  L+L        +   L     L        +
Sbjct: 187 VSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYT 246

Query: 383 LSG------SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLG-SI 435
                     +   +   K L  L    + +   +P      + L  L L   T+    +
Sbjct: 247 AEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDL 306

Query: 436 PREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTM 495
            + +     L  L + D      +         +  L ++ +    + P        L  
Sbjct: 307 VKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366

Query: 496 LTLSDNQLQGSIPNLRNLTN--LIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQ 553
           +++   +L+  +   R +TN  LI +  NR ++T           +L  I+    ++   
Sbjct: 367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMT---------RFRLCIIEPKAPDYLTL 417

Query: 554 ISSDWG------KCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIG 607
              D G       C +L    +S              + ++ ++ ++           + 
Sbjct: 418 EPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVL 477

Query: 608 K-LSSLIKLILRRNQLFGQ-LPSELGSLIQLEYLDLSSNRLSNSIPRSLGN---LVKLHY 662
               SL KL +R      + L +    L  +  L +SS  +S    + LG     + +  
Sbjct: 478 SGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEV 537

Query: 663 LNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSD 720
           ++       +     +E++     +         ++P  + NM     +  S   ++ 
Sbjct: 538 IDERGAPDSRPESCPVERVFIYRTVAGPR----FDMPGFVWNMDQDSTMRFSRQIITT 591

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 54.9 bits (132), Expect = 8e-08
 Identities = 68/490 (13%), Positives = 152/490 (31%), Gaps = 66/490 (13%)

Query: 279 TLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTN----- 333
            +        +++      ++S+ +           +P   G         + ++     
Sbjct: 49  FIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLE 108

Query: 334 --SLSGSIPSEIG------NLKSLSGLELADNELSS-----SIPHYLGNLTNLAAFYLYK 380
              L   + ++        + K+   L L+  E  S     +I     NL  L       
Sbjct: 109 EIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDV 168

Query: 381 NSLSGSIPSEIG-NLKSLSNLDLS--ENKLS-GSIPHSLGNLTNLAILYLHSNTLLGSIP 436
           + +SG   S       SL +L++S   +++S  ++   +    NL  L L+    L  + 
Sbjct: 169 DDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLA 228

Query: 437 REIGNLKSLFELQLG------DNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNL 490
             +     L EL  G         + + +S +L     +  L+ + +A+   +P      
Sbjct: 229 TLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC 288

Query: 491 VKLTMLTLSDNQLQ--GSIPNLRNLTNLIRLRLNRNHLTCNISESFGIH-PKLTFIDLSH 547
            +LT L LS   +Q    +  L     L RL +  +++     E        L  + +  
Sbjct: 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV-LDYIEDAGLEVLASTCKDLRELRVFP 347

Query: 548 NNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIG 607
           +               L   +  + ++    P       +L  +      +       I 
Sbjct: 348 SE-----PFVMEPNVALT--EQGLVSVSMGCP-------KLESVLYFCRQMTNAALITIA 393

Query: 608 K-LSSLIKLILRRNQLFGQLPSELGSL-----------IQLEYLDLSSNRLSNSIPRSLG 655
           +   ++ +  L   +        L  L             L  L LS             
Sbjct: 394 RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGT 453

Query: 656 NLVKLHYLNLS----TNQFIQEIPIKLEKLIHLSELDLSH-NFLGKEIPSQICNMRSLEM 710
              K+  L+++    ++  +  +   L     L +L++    F  K + +    + ++  
Sbjct: 454 YAKKMEMLSVAFAGDSDLGMHHV---LSGCDSLRKLEIRDCPFGDKALLANASKLETMRS 510

Query: 711 LNLSHNNLSD 720
           L +S  ++S 
Sbjct: 511 LWMSSCSVSF 520

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 73/484 (15%), Positives = 151/484 (31%), Gaps = 27/484 (5%)

Query: 77  HCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIG-NISKLKY 135
              H    N +     G      +   SS+  L  + L+   +       I  +    K 
Sbjct: 75  GKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKV 134

Query: 136 LDLSS-NSFSGTIPPQIG-NLSMLKFLYLSANQFSGRIPPQIGHLS----YIEALHL--F 187
           L LSS   FS      I      LK L L  +         + H       + +L++   
Sbjct: 135 LVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCL 194

Query: 188 KNQLSGP-IPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLH------NNSLS 240
            +++S   +   V    +L  L L        +   L     L  L            + 
Sbjct: 195 ASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVY 254

Query: 241 GSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSS-SIPSEIGNLK 299
             +   +   K L  L+   + +   +P      + L TL L   +  S  +   +    
Sbjct: 255 SGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCP 314

Query: 300 SLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNEL 359
            L  L + +   +  + +      +L  L ++ +      P+     + L  + +   +L
Sbjct: 315 KLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKL 374

Query: 360 SSSIPHYLGNLTNLAAFYLYKN--SLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGN 417
            S + ++   +TN A   + +N  +++      I             +   G+I     +
Sbjct: 375 ESVL-YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKD 433

Query: 418 LTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSN-SISHSLGNLTHMTLLALYD 476
           L  L++  L ++ +   I       K +  L +     S+  + H L     +  L + D
Sbjct: 434 LRRLSLSGLLTDKVFEYIGT---YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRD 490

Query: 477 NALSG-VIPEELGNLVKLTMLTLSDNQL-QGSIPNL-RNLTNLIRLRLNRNHLTCNISES 533
                  +      L  +  L +S   +  G+   L + +  L    ++      +  ES
Sbjct: 491 CPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPES 550

Query: 534 FGIH 537
             + 
Sbjct: 551 CPVE 554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.0 bits (101), Expect = 4e-04
 Identities = 49/401 (12%), Positives = 113/401 (28%), Gaps = 45/401 (11%)

Query: 201 GLSSLNELALT--SNFLKGSIPPSLGNLTNLAILYLHNNSLSG----SIPSEIGNLKSLS 254
              +   L L+    F    +        NL  L L  + +       +        SL 
Sbjct: 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV 187

Query: 255 SLALGNNKLC---GSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELG---- 307
           SL +          ++   +    NL +L L        + + +     L  L  G    
Sbjct: 188 SLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTA 247

Query: 308 --ENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSS-SIP 364
                +   + ++L     L  L  + +++   +P+       L+ L L+   + S  + 
Sbjct: 248 EVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLV 307

Query: 365 HYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAIL 424
             L     L   ++        +       K L  L +        +      LT   ++
Sbjct: 308 KLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVF--PSEPFVMEPNVALTEQGLV 365

Query: 425 YLHSNTLLGSIPREIGNLKSLFELQLGDNKLSN----SISHSLGNLTHMTLLALYDNALS 480
            +                  L  +     +++N    +I+ +  N+T   L  +   A  
Sbjct: 366 SV------------SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413

Query: 481 GV--------IPEELGNLVKLTMLTLSDNQLQGSIPNL-RNLTNLIRLRLNRNHLTCN-I 530
            +            + +   L  L+LS          +      +  L +     +   +
Sbjct: 414 YLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM 473

Query: 531 SESFGIHPKLTFIDLSHNNFYGQ-ISSDWGKCPNLGTFDVS 570
                    L  +++    F  + + ++  K   + +  +S
Sbjct: 474 HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMS 514

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 4/110 (3%)

Query: 202 LSSLNELALTSNFLK-GSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGN 260
            +++ EL L +     G I        NL  L L N  L  S+ + +  L  L  L L  
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSE 80

Query: 261 NKLCGSIPLFLGNLTNLDTLYLRNNSFSS-SIPSEIGNLKSLSILELGEN 309
           N++ G + +    L NL  L L  N     S    +  L+ L  L+L   
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 618 RRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIK 677
              +L  + P+ +  L+    LD   +     I       V L +L+L     +  +   
Sbjct: 14  IHLELRNRTPAAVRELV----LDNCKSNDG-KIEGLTAEFVNLEFLSLINVG-LISVSN- 66

Query: 678 LEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDF 721
           L KL  L +L+LS N +   +      + +L  LNLS N L D 
Sbjct: 67  LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 29/111 (26%), Positives = 43/111 (38%), Gaps = 4/111 (3%)

Query: 297 NLKSLSILELGENRLN-GSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELA 355
              ++  L L   + N G I        NL+ L L    L  S+ + +  L  L  LEL+
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELS 79

Query: 356 DNELSSSIPHYLGNLTNLAAFYLYKNSLSG-SIPSEIGNLKSLSNLDLSEN 405
           +N +   +      L NL    L  N L   S    +  L+ L +LDL   
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 6/134 (4%)

Query: 396 SLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKL 455
             S +D+           +   +  L +    SN   G I        +L  L L +  L
Sbjct: 4   GSSGMDMKRRIHLELRNRTPAAVRELVLDNCKSN--DGKIEGLTAEFVNLEFLSLINVGL 61

Query: 456 SNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ--GSIPNLRNL 513
             S+S +L  L  +  L L +N + G +      L  LT L LS N+L+   ++  L+ L
Sbjct: 62  I-SVS-NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKL 119

Query: 514 TNLIRLRLNRNHLT 527
             L  L L    +T
Sbjct: 120 ECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 9e-06
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 481 GVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKL 540
           G I       V L  L+L +  L  S+ NL  L  L +L L+ N +   +       P L
Sbjct: 39  GKIEGLTAEFVNLEFLSLINVGLI-SVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 541 TFIDLSHNNF 550
           T ++LS N  
Sbjct: 98  THLNLSGNKL 107

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 6/115 (5%)

Query: 129 NISKLKYLDLSSNSFS-GTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLF 187
             + ++ L L +   + G I         L+FL L        +   +  L  ++ L L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELS 79

Query: 188 KNQLSGPIPHEVGGLSSLNELALTSNFLK--GSIPPSLGNLTNLAILYLHNNSLS 240
           +N++ G +      L +L  L L+ N LK   ++ P L  L  L  L L N  ++
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP-LKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 6/116 (5%)

Query: 345 NLKSLSGLELADNELS-SSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLS 403
              ++  L L + + +   I        NL    L    L  S+ + +  L  L  L+LS
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELS 79

Query: 404 ENKLSGSIPHSLGNLTNLAILYLHSNTL--LGSIPREIGNLKSLFELQLGDNKLSN 457
           EN++ G +      L NL  L L  N L  + ++   +  L+ L  L L + +++N
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNCEVTN 134

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 656 NLVKLHYLNLSTNQF-IQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLS 714
               +  L L   +    +I     + ++L  L L +  L   + S +  +  L+ L LS
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-ISV-SNLPKLPKLKKLELS 79

Query: 715 HNNLSDFIPRCFEEMNGLLYIDISYNEL 742
            N +   +    E++  L ++++S N+L
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKL 107

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 3/98 (3%)

Query: 572 NNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELG 631
            +  G +     +   L  + L    +   + + + KL  L KL L  N++FG L     
Sbjct: 35  KSNDGKIEGLTAEFVNLEFLSLINVGL-ISVSN-LPKLPKLKKLELSENRIFGGLDMLAE 92

Query: 632 SLIQLEYLDLSSNRLSN-SIPRSLGNLVKLHYLNLSTN 668
            L  L +L+LS N+L + S    L  L  L  L+L   
Sbjct: 93  KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 17/94 (18%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 628 SELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSEL 687
           ++  + ++   LDL   ++   I      L +   ++ S N+ I+++      L  L  L
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNE-IRKLD-GFPLLRRLKTL 69

Query: 688 DLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDF 721
            +++N + +        +  L  L L++N+L + 
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 639 LDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEI 698
           + L++  +  +      N V+   L+L   + I  I      L     +D S N + K  
Sbjct: 2   VKLTAELIEQA--AQYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRK-- 56

Query: 699 PSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 742
                 +R L+ L +++N +        + +  L  + ++ N L
Sbjct: 57  LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 4/109 (3%)

Query: 202 LSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNN 261
                EL L    +   I      L     +   +N +   +      L+ L +L + NN
Sbjct: 18  AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNN 74

Query: 262 KLCGSIPLFLGNLTNLDTLYLRNNSFSS-SIPSEIGNLKSLSILELGEN 309
           ++C         L +L  L L NNS         + +LKSL+ L +  N
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 27/125 (21%), Positives = 42/125 (33%), Gaps = 9/125 (7%)

Query: 245 SEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSIL 304
           ++  N      L L   K+   I      L   D +   +N            L+ L  L
Sbjct: 13  AQYTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTL 69

Query: 305 ELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLE---LADNELSS 361
            +  NR+          L +L  L L  NSL      ++  L SL  L    +  N + +
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVE--LGDLDPLASLKSLTYLCILRNPV-T 126

Query: 362 SIPHY 366
           +  HY
Sbjct: 127 NKKHY 131

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 4/114 (3%)

Query: 173 PQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAIL 232
            Q  +      L L   ++   I +    L   + +  + N ++  +      L  L  L
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTL 69

Query: 233 YLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCG-SIPLFLGNLTNLDTLYLRNN 285
            ++NN +          L  L+ L L NN L        L +L +L  L +  N
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 4/114 (3%)

Query: 389 SEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFEL 448
           ++  N      LDL   K+   I +    L     +   S+  +  +      L+ L  L
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDF-SDNEIRKL-DGFPLLRRLKTL 69

Query: 449 QLGDNKLSNSISHSLGNLTHMTLLALYDNALSGV-IPEELGNLVKLTMLTLSDN 501
            + +N++          L  +T L L +N+L  +   + L +L  LT L +  N
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 341 SEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNL 400
           ++  N      L+L   ++   I +    L    A     N +   +      L+ L  L
Sbjct: 13  AQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTL 69

Query: 401 DLSENKLSGSIPHSLGNLTNLAILYLHSNTL--LGSIPREIGNLKSLFELQLGDNKLSN 457
            ++ N++          L +L  L L +N+L  LG +   + +LKSL  L +  N ++N
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRNPVTN 127

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 2/90 (2%)

Query: 460 SHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRL 519
           +    N      L L    +  VI      L +   +  SDN+++  +     L  L  L
Sbjct: 12  AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDGFPLLRRLKTL 69

Query: 520 RLNRNHLTCNISESFGIHPKLTFIDLSHNN 549
            +N N +           P LT + L++N+
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNS 99

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 587 QLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRL 646
           Q   ID S N I  K+      L  L  L++  N++         +L  L  L L++N L
Sbjct: 43  QFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100

Query: 647 SN-SIPRSLGNLVKLHYLNLSTNQFIQE 673
                   L +L  L YL +  N    +
Sbjct: 101 VELGDLDPLASLKSLTYLCILRNPVTNK 128

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 51.6 bits (124), Expect = 7e-08
 Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 4/110 (3%)

Query: 202 LSSLNELALTSNFLK-GSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGN 260
            S + EL L ++    G +         L  L   N  L+ SI + +  L  L  L L +
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSD 73

Query: 261 NKLCGSIPLFLGNLTNLDTLYLRNNSFSS-SIPSEIGNLKSLSILELGEN 309
           N++ G + +      NL  L L  N     S    +  L++L  L+L   
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 8/123 (6%)

Query: 621 QLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEK 680
           +L  + PS++  L     LD S +     +        +L +L+      +  I   L K
Sbjct: 10  ELRNRTPSDVKEL----VLDNSRSNEG-KLEGLTDEFEELEFLSTINVG-LTSIAN-LPK 62

Query: 681 LIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDF-IPRCFEEMNGLLYIDISY 739
           L  L +L+LS N +   +        +L  LNLS N + D       +++  L  +D+  
Sbjct: 63  LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

Query: 740 NEL 742
            E+
Sbjct: 123 CEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 170 RIPPQIGHLSY--IEALHLFKNQLS-GPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNL 226
           RI  ++ + +   ++ L L  ++ + G +         L  L+  +  L  SI  +L  L
Sbjct: 6   RIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKL 63

Query: 227 TNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCG-SIPLFLGNLTNLDTLYLRNN 285
             L  L L +N +SG +        +L+ L L  NK+   S    L  L NL +L L N 
Sbjct: 64  NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 5/120 (4%)

Query: 249 NLKSLSSLALGNNKL-CGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELG 307
               +  L L N++   G +         L+ L   N   +S   + +  L  L  LEL 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELS 72

Query: 308 ENRLNGSIPLSLGNLTNLDTLYLYTNSLSG-SIPSEIGNLKSLSGLELADNELSSSIPHY 366
           +NR++G + +      NL  L L  N +   S    +  L++L  L+L + E+ +++  Y
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV-TNLNDY 131

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 6/116 (5%)

Query: 414 SLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLA 473
           +  ++  L +    SN   G +       + L  L   +  L+ SI++ L  L  +  L 
Sbjct: 15  TPSDVKELVLDNSRSN--EGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLE 70

Query: 474 LYDNALSGVIPEELGNLVKLTMLTLSDNQLQ--GSIPNLRNLTNLIRLRLNRNHLT 527
           L DN +SG +         LT L LS N+++   +I  L+ L NL  L L    +T
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 465 NLTHMTLLALYDNALS-GVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNR 523
             + +  L L ++  + G +        +L  L+  +  L  SI NL  L  L +L L+ 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIANLPKLNKLKKLELSD 73

Query: 524 NHLTCNISESFGIHPKLTFIDLSHNNF 550
           N ++  +       P LT ++LS N  
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKI 100

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 587 QLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRL 646
           +L  +      +   I + + KL+ L KL L  N++ G L         L +L+LS N++
Sbjct: 43  ELEFLSTINVGL-TSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

Query: 647 SN-SIPRSLGNLVKLHYLNLSTN 668
            + S    L  L  L  L+L   
Sbjct: 101 KDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 6/116 (5%)

Query: 345 NLKSLSGLELADNELSS-SIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLS 403
               +  L L ++  +   +         L         L+ SI + +  L  L  L+LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELS 72

Query: 404 ENKLSGSIPHSLGNLTNLAILYLHSNTL--LGSIPREIGNLKSLFELQLGDNKLSN 457
           +N++SG +        NL  L L  N +  L +I   +  L++L  L L + +++N
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI-EPLKKLENLKSLDLFNCEVTN 127

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 7/105 (6%)

Query: 327 TLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGS 386
            +      L+ S+P+ I        L L +N+++   P    +L NL   Y   N L+ +
Sbjct: 16  LVNCQNIRLA-SVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-A 71

Query: 387 IPSEI-GNLKSLSNLDLSENKLSGSIPH-SLGNLTNLAILYLHSN 429
           IP+ +   L  L+ LDL++N L  SIP  +  NL +L  +YL++N
Sbjct: 72  IPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 49.9 bits (120), Expect = 5e-07
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 7/104 (6%)

Query: 232 LYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSI 291
           +   N  L+ S+P+ I        L L NN++    P    +L NL  LY  +N   ++I
Sbjct: 17  VNCQNIRLA-SVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL-TAI 72

Query: 292 PSEI-GNLKSLSILELGENRLNGSIPL-SLGNLTNLDTLYLYTN 333
           P+ +   L  L+ L+L +N L  SIP  +  NL +L  +YLY N
Sbjct: 73  PTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 11/107 (10%)

Query: 279 TLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGS 338
            +  +N   +S +P+ I        L L  N++    P    +L NL  LY  +N L+ +
Sbjct: 16  LVNCQNIRLAS-VPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-A 71

Query: 339 IPSEI-GNLKSLSGLELADNELSSSIPHYLG---NLTNLAAFYLYKN 381
           IP+ +   L  L+ L+L DN L  SIP   G   NL +L   YLY N
Sbjct: 72  IPTGVFDKLTQLTQLDLNDNHL-KSIPR--GAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 6/83 (7%)

Query: 182 EALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPPSL-GNLTNLAILYLHNNSL 239
           + L L  NQ++  +   V   L +L +L   SN L  +IP  +   LT L  L L++N L
Sbjct: 36  QRLWLNNNQITK-LEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHL 93

Query: 240 SGSIPSEI-GNLKSLSSLALGNN 261
             SIP     NLKSL+ + L NN
Sbjct: 94  K-SIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 12/97 (12%)

Query: 386 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKS 444
           S+P+ I        L L+ N+++   P    +L NL  LY +SN  L +IP  +   L  
Sbjct: 26  SVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQ 82

Query: 445 LFELQLGDNKLSNSISH----SLGNLTHMTLLALYDN 477
           L +L L DN L  SI      +L +LTH+    LY+N
Sbjct: 83  LTQLDLNDNHLK-SIPRGAFDNLKSLTHIY---LYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 8/95 (8%)

Query: 218 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIP--LFLGNLT 275
           S+P   G  T+   L+L+NN ++   P    +L +L  L   +NKL  +IP  +F   LT
Sbjct: 26  SVPA--GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL-TAIPTGVF-DKLT 81

Query: 276 NLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGEN 309
            L  L L +N    SIP     NLKSL+ + L  N
Sbjct: 82  QLTQLDLNDNHL-KSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 31/98 (31%), Positives = 41/98 (41%), Gaps = 11/98 (11%)

Query: 432 LGSIPREIGNLKSLFELQLGDN---KLSNSISHSLGNLTHMTLLALYDNALSGVIPEELG 488
           L S+P  I        L L +N   KL   +   L NL     L    N L+ +      
Sbjct: 24  LASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQ---LYFNSNKLTAIPTGVFD 78

Query: 489 NLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRN 524
            L +LT L L+DN L+ SIP     NL +L  + L  N
Sbjct: 79  KLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 467 THMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRN 524
           T    L L +N ++ + P    +LV L  L  + N+L  +IP      LT L +L LN N
Sbjct: 33  TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDN 91

Query: 525 HL 526
           HL
Sbjct: 92  HL 93

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 9/88 (10%)

Query: 602 IPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSL-GNLVKL 660
           +P+ I   +   +L L  NQ+    P     L+ L+ L  +SN+L+ +IP  +   L +L
Sbjct: 27  VPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQL 83

Query: 661 HYLNLSTNQFIQEIPI----KLEKLIHL 684
             L+L+ N  ++ IP      L+ L H+
Sbjct: 84  TQLDLNDNH-LKSIPRGAFDNLKSLTHI 110

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 53.4 bits (127), Expect = 2e-07
 Identities = 27/187 (14%), Positives = 68/187 (36%), Gaps = 22/187 (11%)

Query: 552 GQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIG--KL 609
             +S      P L    +   N +            L  +++ +  +   +  +I    L
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTNNLSIGKKP---RPNLKSLEIISGGLPDSVVEDILGSDL 218

Query: 610 SSLIKLIL---RRNQLFGQLPSELGSLIQ------LEYLDLSSNRLSNSIPRSLGN---L 657
            +L KL+L     +  F    +    L        L++L +      N +         L
Sbjct: 219 PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278

Query: 658 VKLHYLNLSTNQF----IQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNL 713
            +L  +++S         + +   ++K+ HL  +++ +N+L  E+  ++     ++ +++
Sbjct: 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMK-IDV 337

Query: 714 SHNNLSD 720
           S +   D
Sbjct: 338 SDSQEYD 344

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.6 bits (112), Expect = 1e-05
 Identities = 30/174 (17%), Positives = 55/174 (31%), Gaps = 20/174 (11%)

Query: 397 LSNLDLSENKLS----GSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSL--FELQL 450
             ++D  E ++S      +   L  +  L  L +     L    +   NLKSL      L
Sbjct: 146 WGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGL 205

Query: 451 GDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEEL------GNLVKLTMLTLSDNQLQ 504
            D+ + + +   L NL  + L    ++                     L  L + D + Q
Sbjct: 206 PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ 265

Query: 505 G----SIPNLRNLTNLIRLRLNRNHLT----CNISESFGIHPKLTFIDLSHNNF 550
                       L  L  + ++   LT      + +       L FI++ +N  
Sbjct: 266 NVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.6 bits (104), Expect = 1e-04
 Identities = 29/198 (14%), Positives = 68/198 (34%), Gaps = 27/198 (13%)

Query: 356 DNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGN------LKSLSNLDLSENKLSG 409
            ++++  I        +    +           S I        L ++  L+  + K + 
Sbjct: 124 CSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN 183

Query: 410 SIPHSLGNLTNLAILYLHSNTLLGSIPREIG-----NLKSLFELQLG-DNKLSNSISHSL 463
           ++        NL  L + S  L  S+  +I      NL+ L  L +G ++   +   +  
Sbjct: 184 NLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKL-VLYVGVEDYGFDGDMNVF 242

Query: 464 ------GNLTHMTLLALYDNALSGVIPEELGN---LVKLTMLTLSDNQL-----QGSIPN 509
                     ++  L + D     V+ E       L +L  + +S   L     +  + +
Sbjct: 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH 302

Query: 510 LRNLTNLIRLRLNRNHLT 527
           +  + +L  + +  N+L+
Sbjct: 303 VDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.2 bits (103), Expect = 1e-04
 Identities = 32/222 (14%), Positives = 65/222 (29%), Gaps = 34/222 (15%)

Query: 219 IPPSLGNLTNLAILYLHNNSLSGSIPSEIGN------LKSLSSLALGNNKLCGSIPLFLG 272
           I  +     +   L+  +        S I        L ++  L     K   ++ +   
Sbjct: 131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK 190

Query: 273 NLTNLDTLYLRNNSFSSSIPSEIG--NLKSLSILELGENRLNGSIPLSLGNLTNLDTLYL 330
              NL +L + +     S+  +I   +L +L  L L     +      +     L     
Sbjct: 191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL----- 245

Query: 331 YTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGN---LTNLAAFYLYKNSLSGS- 386
                S           +L  L + D E  + +         L  L    +    L+   
Sbjct: 246 ----FSK------DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG 295

Query: 387 ---IPSEIGNLKSLSNLDLSENKLSG----SIPHSLGNLTNL 421
              +   +  +K L  +++  N LS      +  SL    ++
Sbjct: 296 ARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDV 337

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 51.3 bits (123), Expect = 8e-07
 Identities = 53/374 (14%), Positives = 120/374 (32%), Gaps = 66/374 (17%)

Query: 333 NSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIG 392
            ++   +   I NL +L   +    +L       L     L   + +    +    +E+ 
Sbjct: 12  RAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEV- 70

Query: 393 NLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGD 452
            L SL  L+L+  +++      +  +       L S               +L E+ L  
Sbjct: 71  -LSSLRQLNLAGVRMTPVKCTVVAAV-------LGSGR------------HALDEVNLAS 110

Query: 453 NKLSN----SISHSLGNLTHMTLLALYDNALSGVIPEELG-----NLVKLTMLTLSDNQL 503
            +L      ++            L L  N+L     ++L      +  ++T L LS+N L
Sbjct: 111 CQLDPAGLRTLLPVFLRARK---LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPL 167

Query: 504 QGS-----IPNLRNLTNLIRLRLNRNHLT----CNISESFGIHPKLTFIDLSHNNFYGQ- 553
             +     +  L   T++  L L    L       ++     + +L  +++++N      
Sbjct: 168 TAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227

Query: 554 ---ISSDWGKCPNLGTFDVSVNNI-------IGSLPPEIGDSSQLHVIDLSANHIIGKIP 603
              ++    + P+L    +  N +       +  L       +++ V       +     
Sbjct: 228 ALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV----- 282

Query: 604 SEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVK---- 659
           SE    S ++  + R    + +    +   ++L   DL  +R +   P     L++    
Sbjct: 283 SEYW--SVILSEVQRNLNSWDRA--RVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGE 338

Query: 660 LHYLNLSTNQFIQE 673
           +  L          
Sbjct: 339 VRALLEQLGSSGSP 352

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 53/368 (14%), Positives = 106/368 (28%), Gaps = 56/368 (15%)

Query: 381 NSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIG 440
            ++   +   I NL +L N    + KL       L     L  L+ H          E+ 
Sbjct: 12  RAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEV- 70

Query: 441 NLKSLFELQLGDNKLSNSISHSLG-----NLTHMTLLALYDNALSGVIPEELGN-LVKLT 494
            L SL +L L   +++      +          +  + L    L       L    ++  
Sbjct: 71  -LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRAR 129

Query: 495 MLTLSDNQLQ-GSIPNL-----RNLTNLIRLRLNRNHLTCN----ISESFGIHPKLTFID 544
            L L  N L   +  +L      +   +  LRL+ N LT      + E    +  +T + 
Sbjct: 130 KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLS 189

Query: 545 LSHNNFYGQ----ISSDWGKCPNLGTFDVSVNNI----IGSLPPEIGDSSQLHVIDLSAN 596
           L H     +    +++   +   L   +V+ N        +L     +   L ++ L  N
Sbjct: 190 LLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249

Query: 597 HIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGN 656
            +     S  G+            Q+   L        ++         +S      L  
Sbjct: 250 EL-----SSEGR------------QVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSE 292

Query: 657 LVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNM----RSLEMLN 712
           +                   ++++ + L   DL  +      P +   +      +  L 
Sbjct: 293 V-------QRNLNSWDRA--RVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALL 343

Query: 713 LSHNNLSD 720
               +   
Sbjct: 344 EQLGSSGS 351

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 42/276 (15%), Positives = 78/276 (28%), Gaps = 33/276 (11%)

Query: 283 RNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSE 342
            N +  + +   I NL +L   +  + +L       L     LD L+ +    +    +E
Sbjct: 10  HNRAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAE 69

Query: 343 IGNLKSLSGLELADNELSSSIPHYLG-----NLTNLAAFYLYKNSLSGSIPSEIGN-LKS 396
           +  L SL  L LA   ++      +          L    L    L  +    +      
Sbjct: 70  V--LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLR 127

Query: 397 LSNLDLSENKLSGSIPHSLG-----NLTNLAILYLHSNTL----LGSIPREIGNLKSLFE 447
              L L  N L       L      +   +  L L +N L    +  +   +    S+  
Sbjct: 128 ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTH 187

Query: 448 LQLGDNKLSN----SISHSLGNLTHMTLLALYDNALSGVIPEELGNLVK----LTMLTLS 499
           L L    L +     ++  L     +  L +  N         L    +    L +L L 
Sbjct: 188 LSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLY 247

Query: 500 DNQLQGS--------IPNLRNLTNLIRLRLNRNHLT 527
            N+L                    ++        ++
Sbjct: 248 FNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 35/95 (36%), Positives = 47/95 (49%), Gaps = 6/95 (6%)

Query: 361 SSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSL-GNLT 419
           +S+P   G  T     YLY N ++   P     L  L+ LDL  N+L+  +P  +   LT
Sbjct: 22  ASVPT--GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLT 78

Query: 420 NLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDN 453
            L  L L+ N  L SIPR    NLKSL  + L +N
Sbjct: 79  QLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 6/83 (7%)

Query: 182 EALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPPSL-GNLTNLAILYLHNNSL 239
           + L+L+ NQ++  +   V   L+ L  L L +N L   +P  +   LT L  L L++N L
Sbjct: 33  QVLYLYDNQITK-LEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQL 90

Query: 240 SGSIPSEI-GNLKSLSSLALGNN 261
             SIP     NLKSL+ + L NN
Sbjct: 91  K-SIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 46.8 bits (112), Expect = 4e-06
 Identities = 37/109 (33%), Positives = 49/109 (44%), Gaps = 17/109 (15%)

Query: 251 KSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENR 310
           KSL+S+  G       IP      T    LYL +N  +   P     L  L+ L+L  N+
Sbjct: 19  KSLASVPTG-------IP------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ 65

Query: 311 LNGSIPLSL-GNLTNLDTLYLYTNSLSGSIPSEI-GNLKSLSGLELADN 357
           L   +P  +   LT L  L L  N L  SIP     NLKSL+ + L +N
Sbjct: 66  LT-VLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 8/95 (8%)

Query: 218 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIP--LFLGNLT 275
           S+P   G  T   +LYL++N ++   P     L  L+ L L NN+L   +P  +F   LT
Sbjct: 23  SVPT--GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVF-DKLT 78

Query: 276 NLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGEN 309
            L  L L +N    SIP     NLKSL+ + L  N
Sbjct: 79  QLTQLSLNDNQL-KSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 11/106 (10%)

Query: 400 LDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSI 459
           +D S   L+ S+P   G  T   +LYL+ N +    P     L  L  L L +N+L+  +
Sbjct: 14  VDCSGKSLA-SVPT--GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VL 69

Query: 460 SH----SLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDN 501
                  L  LT    L+L DN L  +      NL  LT + L +N
Sbjct: 70  PAGVFDKLTQLTQ---LSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 467 THMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN--LRNLTNLIRLRLNRN 524
           T   +L LYDN ++ + P     L +LT L L +NQL   +P      LT L +L LN N
Sbjct: 30  TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDN 88

Query: 525 HLTCNISESFGIHPKLTFIDLSHNN 549
            L      +F     LT I L  NN
Sbjct: 89  QLKSIPRGAFDNLKSLTHIWL-LNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 5/83 (6%)

Query: 637 EYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFLG 695
           + L L  N+++   P     L +L  L+L  NQ +  +P  + +KL  L++L L+ N L 
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQL- 90

Query: 696 KEIPSQIC-NMRSLEMLNLSHNN 717
           K IP     N++SL  + L  NN
Sbjct: 91  KSIPRGAFDNLKSLTHIWL-LNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 9/88 (10%)

Query: 602 IPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSL-GNLVKL 660
           +P+ I   ++   L L  NQ+    P     L QL  LDL +N+L+  +P  +   L +L
Sbjct: 24  VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQL 80

Query: 661 HYLNLSTNQFIQEIPI----KLEKLIHL 684
             L+L+ NQ ++ IP      L+ L H+
Sbjct: 81  TQLSLNDNQ-LKSIPRGAFDNLKSLTHI 107

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 11/99 (11%), Positives = 38/99 (38%), Gaps = 6/99 (6%)

Query: 623 FGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLS-----TNQFIQEIPIK 677
           +  LP+      +++ +D + + + +     +  L  +  + L       +  ++ +   
Sbjct: 50  YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQL 109

Query: 678 LEKLIHLSELDLSHNF-LGKEIPSQICNMRSLEMLNLSH 715
                 + E+++     +  +    + + R+L+ L LS 
Sbjct: 110 ENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSD 148

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 36/207 (17%), Positives = 71/207 (34%), Gaps = 33/207 (15%)

Query: 493 LTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYG 552
           L+   +  + L G +     L     L L    L+  I  +   +  L  ++LS      
Sbjct: 100 LSNSVIEVSTLHGILSQCSKLQ---NLSLEGLRLSDPIVNTLAKNSNLVRLNLSG----- 151

Query: 553 QISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGK--IPSEIGKLS 610
                   C      + ++  ++ S         +L  ++LS      +  +   +  +S
Sbjct: 152 --------CSGFS--EFALQTLLSSCS-------RLDELNLSWCFDFTEKHVQVAVAHVS 194

Query: 611 -SLIKLILRRNQLF---GQLPSELGSLIQLEYLDLSS-NRLSNSIPRSLGNLVKLHYLNL 665
            ++ +L L   +       L + +     L +LDLS    L N   +    L  L +L+L
Sbjct: 195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL 254

Query: 666 STNQFIQEIPIK-LEKLIHLSELDLSH 691
           S    I    +  L ++  L  L +  
Sbjct: 255 SRCYDIIPETLLELGEIPTLKTLQVFG 281

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	893
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-26
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-22
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-22
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-22
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-22
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-20
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-21
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-20
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-17
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-17
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-13
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-11
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-11
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-09
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-08
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	8e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	9e-07
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.002
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-06
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	4e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	8e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-06
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.004
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	9e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	7e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	7e-04

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score =  106 bits (265), Expect = 8e-26
 Identities = 85/311 (27%), Positives = 130/311 (41%), Gaps = 14/311 (4%)

Query: 36  EEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCN---HVGRVNSINLTNV 92
           ++  ALL+ K  L N    + L SW     T      W G+ C+      RVN+++L+ +
Sbjct: 6   QDKQALLQIKKDLGNP---TTLSSW--LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60

Query: 93  GLKGTLH-DFSFSSFPHLAYLDLQVN-QIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQ 150
            L        S ++ P+L +L +     + G IPP I  +++L YL ++  + SG IP  
Sbjct: 61  NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120

Query: 151 IGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNE-LA 209
           +  +  L  L  S N  SG +PP I  L  +  +    N++SG IP   G  S L   + 
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180

Query: 210 LTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPL 269
           ++ N L G IPP+  NL         + ++     S +      +               
Sbjct: 181 ISRNRLTGKIPPTFANLNL--AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238

Query: 270 FLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLY 329
            +G   NL+ L LRNN    ++P  +  LK L  L +  N L G IP   GNL   D   
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSA 297

Query: 330 LYTNSLSGSIP 340
              N      P
Sbjct: 298 YANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 87.5 bits (215), Expect = 3e-19
 Identities = 72/265 (27%), Positives = 109/265 (41%), Gaps = 7/265 (2%)

Query: 176 GHLSYIEALHLFKNQLSG--PIPHEVGGLSSLNELALTSN-FLKGSIPPSLGNLTNLAIL 232
                +  L L    L    PIP  +  L  LN L +     L G IPP++  LT L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 233 YLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIP 292
           Y+ + ++SG+IP  +  +K+L +L    N L G++P  + +L NL  +    N  S +IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 293 SEIGNLKSLSI-LELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSG 351
              G+   L   + +  NRL G IP +  NL                  S +      + 
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML--EGDASVLFGSDKNTQ 224

Query: 352 LELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSI 411
                    +     +G   NL    L  N + G++P  +  LK L +L++S N L G I
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 412 PHSLGNLTNLAILYLHSNTLLGSIP 436
           P   GNL    +    +N  L   P
Sbjct: 285 P-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 84.8 bits (208), Expect = 3e-18
 Identities = 71/290 (24%), Positives = 109/290 (37%), Gaps = 26/290 (8%)

Query: 389 SEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFEL 448
                   ++NLDLS   L    P                      IP  + NL  L  L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYP----------------------IPSSLANLPYLNFL 81

Query: 449 QLGDN-KLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSI 507
            +G    L   I  ++  LT +  L +    +SG IP+ L  +  L  L  S N L G++
Sbjct: 82  YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141

Query: 508 PN-LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGT 566
           P  + +L NL+ +  + N ++  I +S+G   KL        N             NL  
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF 201

Query: 567 FDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQL 626
            D+S N + G      G       I L+ N +   +       +      LR N+++G L
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLD-LRNNRIYGTL 260

Query: 627 PSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPI 676
           P  L  L  L  L++S N L   IP   GNL +      + N+ +   P+
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 84.0 bits (206), Expect = 4e-18
 Identities = 64/292 (21%), Positives = 96/292 (32%), Gaps = 29/292 (9%)

Query: 481 GVIPEELGNLVKLTMLTLSDNQLQGSIP---NLRNLTNLIRLRLNRNH-LTCNISESFGI 536
           GV+ +      ++  L LS   L    P   +L NL  L  L +   + L   I  +   
Sbjct: 40  GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK 99

Query: 537 HPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSAN 596
             +L ++ ++H N  G I     +   L T D S N + G+LPP I     L  I    N
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159

Query: 597 HIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGN 656
            I G IP   G  S L   +               +          S  +       L  
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-NLNLAFVDLSRNMLEGDASVLFG 218

Query: 657 LVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHN 716
             K           +     K+    +L+ LDL +N +   +P  +  ++ L  LN+S N
Sbjct: 219 SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

Query: 717 NLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCG 768
           NL                         G IP         + A   N+ LCG
Sbjct: 279 NL------------------------CGEIPQGGNLQRFDVSAYANNKCLCG 306

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 82.9 bits (203), Expect = 9e-18
 Identities = 70/261 (26%), Positives = 110/261 (42%), Gaps = 6/261 (2%)

Query: 272 GNLTNLDTLYLRNNSFSS--SIPSEIGNLKSLSILELGEN-RLNGSIPLSLGNLTNLDTL 328
                ++ L L   +      IPS + NL  L+ L +G    L G IP ++  LT L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 329 YLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIP 388
           Y+   ++SG+IP  +  +K+L  L+ + N LS ++P  + +L NL       N +SG+IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 389 SEIGNLKSLSN-LDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFE 447
              G+   L   + +S N+L+G IP +  NL         S  +L      +       +
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL--AFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 448 LQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSI 507
                          +G   ++  L L +N + G +P+ L  L  L  L +S N L G I
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 508 PNLRNLTNLIRLRLNRNHLTC 528
           P   NL          N   C
Sbjct: 285 PQGGNLQRFDVSAYANNKCLC 305

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 75.9 bits (185), Expect = 2e-15
 Identities = 66/268 (24%), Positives = 100/268 (37%), Gaps = 6/268 (2%)

Query: 440 GNLKSLFELQLGDNKLSN--SISHSLGNLTHMTLLALYDNA-LSGVIPEELGNLVKLTML 496
                +  L L    L     I  SL NL ++  L +     L G IP  +  L +L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 497 TLSDNQLQGSIPNLRNLTN-LIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQIS 555
            ++   + G+IP+  +    L+ L  + N L+  +  S    P L  I    N   G I 
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 556 SDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKL 615
             +G    L T      N +    P    +  L  +DLS N + G      G   +  + 
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN-TQK 225

Query: 616 ILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIP 675
           I            ++G    L  LDL +NR+  ++P+ L  L  LH LN+S N    EIP
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 676 IKLEKLIHLSELDLSHNFLGKEIPSQIC 703
            +   L        ++N      P   C
Sbjct: 286 -QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 69.8 bits (169), Expect = 2e-13
 Identities = 68/267 (25%), Positives = 111/267 (41%), Gaps = 5/267 (1%)

Query: 245 SEIGNLKSLSSLALGNNKLCG--SIPLFLGNLTNLDTLYLRNN-SFSSSIPSEIGNLKSL 301
                   +++L L    L     IP  L NL  L+ LY+    +    IP  I  L  L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 302 SILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSS 361
             L +    ++G+IP  L  +  L TL    N+LSG++P  I +L +L G+    N +S 
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 362 SIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNL 421
           +IP   G+ + L        +             +L+ +DLS N L G      G+  N 
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN- 222

Query: 422 AILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSG 481
                 +   L     ++G  K+L  L L +N++  ++   L  L  +  L +  N L G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 482 VIPEELGNLVKLTMLTLSDNQLQGSIP 508
            IP+  GNL +  +   ++N+     P
Sbjct: 283 EIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 98.2 bits (243), Expect = 2e-22
 Identities = 79/386 (20%), Positives = 146/386 (37%), Gaps = 36/386 (9%)

Query: 297 NLKSLSILELGENRLNGSIPLS-LGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELA 355
            L       LG+  +  ++  + L  +T L    L   S+ G     +  L +L+ +  +
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFS 74

Query: 356 DNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPH-- 413
           +N+L+   P  L NLT L    +  N ++   P       +   L  ++      + +  
Sbjct: 75  NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 414 ----------SLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLS-NSISHS 462
                     ++ +++ L+ L        G+   ++  L +L  L+  D   +  S    
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192

Query: 463 LGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLN 522
           L  LT++  L   +N +S + P  +     L  L+L+ NQL+  I  L +LTNL  L L 
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD-IGTLASLTNLTDLDLA 249

Query: 523 RNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEI 582
            N ++           KLT + L  N                   + +           I
Sbjct: 250 NNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED----ISPI 303

Query: 583 GDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLS 642
            +   L  + L  N+I    P  +  L+ L +L    N++     S L +L  + +L   
Sbjct: 304 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAG 359

Query: 643 SNRLSNSIPRSLGNLVKLHYLNLSTN 668
            N++S+  P  L NL ++  L L+  
Sbjct: 360 HNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 97.8 bits (242), Expect = 3e-22
 Identities = 99/367 (26%), Positives = 151/367 (41%), Gaps = 37/367 (10%)

Query: 102 SFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLY 161
           S +    +  L      I  I    +  ++ L  ++ S+N  +   P  + NL+ L  + 
Sbjct: 39  SQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDIL 94

Query: 162 LSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIP---------------HEVGGLSSLN 206
           ++ NQ +   P           L   +     P+                 ++  LS L 
Sbjct: 95  MNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT 154

Query: 207 ELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGS 266
            L   S   + +    L NLT L  L + +N    S  S +  L +L SL   NN++   
Sbjct: 155 SLQQLSFGNQVTDLKPLANLTTLERLDISSN--KVSDISVLAKLTNLESLIATNNQISDI 212

Query: 267 IPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLD 326
            PL    LTNLD L L  N         + +L +L+ L+L  N+++   PLS   LT L 
Sbjct: 213 TPLG--ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS--GLTKLT 266

Query: 327 TLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGS 386
            L L  N +S   P  +  L +L+ LEL +N+L    P    NL NL    LY N++S  
Sbjct: 267 ELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDI 322

Query: 387 IPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLF 446
            P  + +L  L  L  + NK+S     SL NLTN+  L    N +    P  + NL  + 
Sbjct: 323 SP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRIT 376

Query: 447 ELQLGDN 453
           +L L D 
Sbjct: 377 QLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 92.8 bits (229), Expect = 1e-20
 Identities = 95/381 (24%), Positives = 158/381 (41%), Gaps = 38/381 (9%)

Query: 183 ALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGS 242
              L K  ++  +      L  +  L      +K SI   +  L NL  +   NN L+  
Sbjct: 26  KTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDI 81

Query: 243 IPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSE-------- 294
            P  + NL  L  + + NN++    PL         TL+    +    + +         
Sbjct: 82  TP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 139

Query: 295 -------IGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLK 347
                  I  L  L+ L+        +    L NLT L+ L + +N    S  S +  L 
Sbjct: 140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK--VSDISVLAKLT 197

Query: 348 SLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKL 407
           +L  L   +N++S   P     LTNL    L  N L       + +L +L++LDL+ N++
Sbjct: 198 NLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQI 253

Query: 408 SGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLT 467
           S   P  L  LT L  L L +N +    P  +  L +L  L+L +N+L +    S  NL 
Sbjct: 254 SNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLK 307

Query: 468 HMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLT 527
           ++T L LY N +S + P  + +L KL  L  ++N++   + +L NLTN+  L    N ++
Sbjct: 308 NLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VSSLANLTNINWLSAGHNQIS 364

Query: 528 CNISESFGIHPKLTFIDLSHN 548
                      ++T + L+  
Sbjct: 365 DLT--PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 92.8 bits (229), Expect = 1e-20
 Identities = 72/392 (18%), Positives = 133/392 (33%), Gaps = 48/392 (12%)

Query: 369 NLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHS 428
            L       L K +++ ++     +L  ++ L      +  SI   +  L NL  +   +
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSN 75

Query: 429 NTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELG 488
           N L    P  + NL  L ++ + +N++++    +         L          +     
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN--- 130

Query: 489 NLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHN 548
                            +I ++  L+ L  L+           +       L  +D+S N
Sbjct: 131 -----LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 185

Query: 549 NFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGK 608
                      K  NL +   + N I    P  I   + L  + L+ N +       +  
Sbjct: 186 KVSDIS--VLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLAS 239

Query: 609 LSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIP----------------- 651
           L++L  L L  NQ+    P  L  L +L  L L +N++SN  P                 
Sbjct: 240 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 297

Query: 652 ---RSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSL 708
                + NL  L YL L  N      P+    L  L  L  ++N +     S + N+ ++
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFANNKV--SDVSSLANLTNI 353

Query: 709 EMLNLSHNNLSDFIPRCFEEMNGLLYIDISYN 740
             L+  HN +SD  P     +  +  + ++  
Sbjct: 354 NWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 90.8 bits (224), Expect = 5e-20
 Identities = 91/391 (23%), Positives = 157/391 (40%), Gaps = 35/391 (8%)

Query: 101 FSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFL 160
           F+ ++        L    +   +     ++ ++  L              +  L+ L  +
Sbjct: 16  FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQI 71

Query: 161 YLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIP 220
             S NQ +   P  + +L+ +  + +  NQ++   P       +   L          + 
Sbjct: 72  NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 129

Query: 221 P------------SLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLAL-GNNKLCGSI 267
                        ++ +++ L+ L        G+  +++  L +L++L     +    S 
Sbjct: 130 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 189

Query: 268 PLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDT 327
              L  LTNL++L   NN  S   P  I    +L  L L  N+L      +L +LTNL  
Sbjct: 190 ISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTD 245

Query: 328 LYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSI 387
           L L  N +S   P  +  L  L+ L+L  N++S+  P     LT L    L +N      
Sbjct: 246 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLELNEN--QLED 299

Query: 388 PSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFE 447
            S I NLK+L+ L L  N +S   P  + +LT L  L+  +N +  S    + NL ++  
Sbjct: 300 ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV--SDVSSLANLTNINW 355

Query: 448 LQLGDNKLSNSISHSLGNLTHMTLLALYDNA 478
           L  G N++S+     L NLT +T L L D A
Sbjct: 356 LSAGHNQISDLT--PLANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 87.0 bits (214), Expect = 1e-18
 Identities = 53/249 (21%), Positives = 94/249 (37%), Gaps = 32/249 (12%)

Query: 57  LPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQV 116
           + + +   + +             +  + ++   ++           +   +L  L    
Sbjct: 147 ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN 206

Query: 117 NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIG 176
           NQI  I P  I  ++ L  L L+ N         + +L+ L  L L+ NQ S   P  + 
Sbjct: 207 NQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LS 260

Query: 177 HLSYIEALHLFKNQLSGPIP--------------------HEVGGLSSLNELALTSNFLK 216
            L+ +  L L  NQ+S   P                      +  L +L  L L  N + 
Sbjct: 261 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 320

Query: 217 GSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTN 276
              P  + +LT L  L+  NN +S    S + NL +++ L+ G+N++    P  L NLT 
Sbjct: 321 DISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTR 374

Query: 277 LDTLYLRNN 285
           +  L L + 
Sbjct: 375 ITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 87.0 bits (214), Expect = 1e-18
 Identities = 89/397 (22%), Positives = 151/397 (38%), Gaps = 34/397 (8%)

Query: 225 NLTNLAILYLHNNSLSGSIP-SEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLR 283
            L       L   +++ ++  +++  + +L +  LG   + G     +  L NL  +   
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFS 74

Query: 284 NNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI 343
           NN  +   P  + NL  L  + +  N++    PL+        TL+    +    + +  
Sbjct: 75  NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 344 GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLS 403
                         ELSS+    +  L+ L +          +    + NL +L  LD+S
Sbjct: 133 NL---------NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 183

Query: 404 ENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSL 463
            NK+S     +   LTNL  L   +N +    P  I    +L EL L  N+L +    +L
Sbjct: 184 SNKVSDISVLA--KLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTL 237

Query: 464 GNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNR 523
            +LT++T L L +N +S + P  L  L KLT L L  NQ+   I  L  LT L  L LN 
Sbjct: 238 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISPLAGLTALTNLELNE 294

Query: 524 NHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIG 583
           N               LT++ L  NN              L     + N +       + 
Sbjct: 295 NQ--LEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLA 348

Query: 584 DSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRN 620
           + + ++ +    N I    P  +  L+ + +L L   
Sbjct: 349 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 85.8 bits (211), Expect = 3e-18
 Identities = 89/397 (22%), Positives = 153/397 (38%), Gaps = 34/397 (8%)

Query: 129 NISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFK 188
            +++     L   + + T+     +L  +  L              + +L+ +  ++   
Sbjct: 20  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 75

Query: 189 NQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIG 248
           NQL+   P  +  L+ L ++ + +N +    P +         L+ +  +    + +   
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT- 132

Query: 249 NLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGE 308
                      N          + +++ L  L         +  +++  L +L+ LE  +
Sbjct: 133 -----------NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 181

Query: 309 NRLN-GSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYL 367
              N  S    L  LTNL++L    N +S   P  I    +L  L L  N+L       L
Sbjct: 182 ISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTL 237

Query: 368 GNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLH 427
            +LTNL    L  N +S   P  +  L  L+ L L  N++S   P  L  LT L  L L+
Sbjct: 238 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 293

Query: 428 SNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEEL 487
            N         I NLK+L  L L  N +S+     + +LT +  L   +N +S      L
Sbjct: 294 ENQ--LEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD--VSSL 347

Query: 488 GNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRN 524
            NL  +  L+   NQ+    P L NLT + +L LN  
Sbjct: 348 ANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 78.9 bits (193), Expect = 5e-16
 Identities = 71/364 (19%), Positives = 127/364 (34%), Gaps = 72/364 (19%)

Query: 441 NLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSD 500
            L    +  LG   +++++S +  +L  +T L      +  +  + +  L  LT +  S+
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSN 75

Query: 501 NQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKL-------------------T 541
           NQL    P L+NLT L+ + +N N +      +   +                       
Sbjct: 76  NQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134

Query: 542 FIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSL------------------PPEIG 583
                 +N    IS+  G          +    +  L                     + 
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 194

Query: 584 DSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSS 643
             + L  +  + N I    P  I   ++L +L L  NQL       L SL  L  LDL++
Sbjct: 195 KLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 250

Query: 644 NRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPI--------------------KLEKLIH 683
           N++SN  P  L  L KL  L L  NQ     P+                     +  L +
Sbjct: 251 NQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKN 308

Query: 684 LSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 743
           L+ L L  N +    P  + ++  L+ L  ++N +SD        +  + ++   +N++ 
Sbjct: 309 LTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQIS 364

Query: 744 GPIP 747
              P
Sbjct: 365 DLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.4 bits (145), Expect = 3e-10
 Identities = 32/146 (21%), Positives = 59/146 (40%), Gaps = 6/146 (4%)

Query: 44  WKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSF 103
               L N+   +L P   L   T++   A    + + +  + ++    +           
Sbjct: 244 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI 303

Query: 104 SSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLS 163
           S+  +L YL L  N I  I P  + +++KL+ L  ++N  S      + NL+ + +L   
Sbjct: 304 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAG 359

Query: 164 ANQFSGRIPPQIGHLSYIEALHLFKN 189
            NQ S   P  + +L+ I  L L   
Sbjct: 360 HNQISDLTP--LANLTRITQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 96.6 bits (239), Expect = 2e-22
 Identities = 55/288 (19%), Positives = 101/288 (35%), Gaps = 14/288 (4%)

Query: 386 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSL 445
            +P ++      + LDL  NK++        NL NL  L L +N +    P     L  L
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 446 FELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQG 505
             L L  N+L             +  L +++N ++ V       L ++ ++ L  N L+ 
Sbjct: 82  ERLYLSKNQLKELPEK---MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 138

Query: 506 SIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLG 565
           S         + +L   R   T   +   G+ P LT + L  N      ++      NL 
Sbjct: 139 SGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLA 198

Query: 566 TFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFG- 624
              +S N+I       + ++  L  + L+ N+ + K+P  +     +  + L  N +   
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLN-NNKLVKVPGGLADHKYIQVVYLHNNNISAI 257

Query: 625 -----QLPSELGSLIQLEYLDLSSNRLSNS--IPRSLGNLVKLHYLNL 665
                  P           + L SN +      P +   +     + L
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 95.5 bits (236), Expect = 5e-22
 Identities = 62/269 (23%), Positives = 110/269 (40%), Gaps = 13/269 (4%)

Query: 218 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNL 277
            +P  L    + A+L L NN ++     +  NLK+L +L L NNK+    P     L  L
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 278 DTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSG 337
           + LYL  N            L+ L + E    ++  S+   L  +  ++ L       SG
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSG 140

Query: 338 SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSL 397
                   +K LS + +AD  +++       +LT L   +L  N ++    + +  L +L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL---HLDGNKITKVDAASLKGLNNL 197

Query: 398 SNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSN 457
           + L LS N +S     SL N  +L  L+  +N  L  +P  + + K +  + L +N +S 
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELH-LNNNKLVKVPGGLADHKYIQVVYLHNNNISA 256

Query: 458 ------SISHSLGNLTHMTLLALYDNALS 480
                             + ++L+ N + 
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 90.1 bits (222), Expect = 3e-20
 Identities = 71/262 (27%), Positives = 113/262 (43%), Gaps = 15/262 (5%)

Query: 107 PHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQ 166
           P  A LDLQ N+I  I      N+  L  L L +N  S   P     L  L+ LYLS NQ
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 167 FSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLK--GSIPPSLG 224
               +P ++     ++ L + +N+++        GL+ +  + L +N LK  G    +  
Sbjct: 91  LKE-LPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 225 NLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRN 284
            +  L+ + + + +++ +IP   G   SL+ L L  NK+       L  L NL  L L  
Sbjct: 148 GMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 285 NSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSG------S 338
           NS S+     + N   L  L L  N+L   +P  L +   +  +YL+ N++S        
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 263

Query: 339 IPSEIGNLKSLSGLELADNELS 360
            P       S SG+ L  N + 
Sbjct: 264 PPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.8 bits (185), Expect = 2e-15
 Identities = 42/236 (17%), Positives = 86/236 (36%), Gaps = 5/236 (2%)

Query: 514 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN 573
            +   L L  N +T      F     L  + L +N         +     L    +S  N
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS-KN 89

Query: 574 IIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSL 633
            +  LP ++  + Q   +  +    + K          +++L     +  G        +
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 634 IQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNF 693
            +L Y+ ++   ++ +IP+ L     L  L+L  N+  +     L+ L +L++L LS N 
Sbjct: 150 KKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 694 LGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS 749
           +       + N   L  L+L++N L   +P    +   +  + +  N +     N 
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSND 261

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.7 bits (169), Expect = 2e-13
 Identities = 43/215 (20%), Positives = 77/215 (35%), Gaps = 4/215 (1%)

Query: 562 PNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQ 621
           P+    D+  N I      +  +   LH + L  N I    P     L  L +L L +NQ
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 622 LFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKL 681
           L         +L +L   +    ++  S+   L N + +  L  +  +         + +
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGL-NQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 682 IHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNE 741
             LS + ++   +   IP  +    SL  L+L  N ++       + +N L  + +S+N 
Sbjct: 150 KKLSYIRIADTNI-TTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 742 LHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSC 776
           +      S A +  L E    N  L     G    
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH 241

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.1 bits (139), Expect = 1e-09
 Identities = 31/199 (15%), Positives = 63/199 (31%), Gaps = 28/199 (14%)

Query: 601 KIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKL 660
           K+P ++        L L+ N++      +  +L  L  L L +N++S   P +   LVKL
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 661 HYLNLSTNQF-----------------------IQEIPIKLEKLIHLSELDLSHNFLGKE 697
             L LS NQ                        +++        + + EL  +       
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 698 IPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALM 757
                  M+ L  + ++  N++            L  + +  N++      S    + L 
Sbjct: 142 ENGAFQGMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLA 198

Query: 758 EALQGNEGLCGDIKGFQSC 776
           +       +     G  + 
Sbjct: 199 KLGLSFNSISAVDNGSLAN 217

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.3 bits (116), Expect = 9e-07
 Identities = 29/158 (18%), Positives = 53/158 (33%), Gaps = 3/158 (1%)

Query: 635 QLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFL 694
            L  +  S   L   +P+ L        L+L  N+  +      + L +L  L L +N +
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLPPDTA--LLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 695 GKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSD 754
            K  P     +  LE L LS N L +   +  + +  L   +    ++   + N      
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 755 ALMEALQGNEGLCGDIKGFQSCKASKSHKPASRKIWVV 792
            +       +    +   FQ  K     + A   I  +
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 165

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.9 bits (97), Expect = 2e-04
 Identities = 24/144 (16%), Positives = 43/144 (29%)

Query: 683 HLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 742
             + LDL +N + +       N+++L  L L +N +S   P  F  +  L  + +S N+L
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 743 HGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSCKASKSHKPASRKIWVVIVFPLLGTVA 802
                        L         +   +    +            K   +      G   
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 803 LLISLIALFFIFRRRKNALQTLQS 826
           L    IA   I    +    +L  
Sbjct: 152 LSYIRIADTNITTIPQGLPPSLTE 175

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.2 bits (227), Expect = 4e-21
 Identities = 67/275 (24%), Positives = 108/275 (39%), Gaps = 7/275 (2%)

Query: 279 TLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGS 338
           T         + +P  I    +   + L  NR++     S     NL  L+L++N L+  
Sbjct: 15  TTSCPQQGLQA-VPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 339 IPSEIGNLKSLSGLELADNELSSSI-PHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSL 397
             +    L  L  L+L+DN    S+ P     L  L   +L +  L    P     L +L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 398 SNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSN 457
             L L +N L      +  +L NL  L+LH N +     R    L SL  L L  N++++
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 458 SISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLI 517
              H+  +L  +  L L+ N LS +  E L  L  L  L L+DN              L 
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQ 251

Query: 518 RLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYG 552
           + R + + + C++ +            L+ N+  G
Sbjct: 252 KFRGSSSEVPCSLPQRLA---GRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.7 bits (218), Expect = 8e-20
 Identities = 64/256 (25%), Positives = 95/256 (37%), Gaps = 5/256 (1%)

Query: 106 FPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSAN 165
                 + L  N+I  +          L  L L SN  +         L++L+ L LS N
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 166 QFSGRIPP-QIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLG 224
                + P     L  +  LHL +  L    P    GL++L  L L  N L+     +  
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 225 NLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRN 284
           +L NL  L+LH N +S         L SL  L L  N++    P    +L  L TLYL  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 285 NSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIG 344
           N+ S+     +  L++L  L L +N               L      ++ +  S+P    
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQ--- 266

Query: 345 NLKSLSGLELADNELS 360
            L       LA N+L 
Sbjct: 267 RLAGRDLKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (200), Expect = 2e-17
 Identities = 64/256 (25%), Positives = 99/256 (38%), Gaps = 5/256 (1%)

Query: 203 SSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNK 262
           ++   + L  N +      S     NL IL+LH+N L+    +    L  L  L L +N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 263 LCGSI-PLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGN 321
              S+ P     L  L TL+L         P     L +L  L L +N L      +  +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 322 LTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKN 381
           L NL  L+L+ N +S         L SL  L L  N ++   PH   +L  L   YL+ N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 382 SLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGN 441
           +LS      +  L++L  L L++N        +      L      S+ +  S+P+ +  
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLPQRLAG 270

Query: 442 LKSLFELQLGDNKLSN 457
                  +L  N L  
Sbjct: 271 RDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.9 bits (195), Expect = 7e-17
 Identities = 55/241 (22%), Positives = 86/241 (35%), Gaps = 10/241 (4%)

Query: 514 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN 573
               R+ L+ N ++   + SF     LT + L  N      ++ +     L   D+S N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 574 IIGSLPP-EIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGS 632
            + S+ P       +LH + L    +    P     L++L  L L+ N L          
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 633 LIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHN 692
           L  L +L L  NR+S+   R+   L  L  L L  N+     P     L  L  L L  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 693 FLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLL----YIDISYNELHGPIPN 748
            L       +  +R+L+ L L+ N        C      L         S +E+   +P 
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPW-----VCDCRARPLWAWLQKFRGSSSEVPCSLPQ 266

Query: 749 S 749
            
Sbjct: 267 R 267

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (169), Expect = 1e-13
 Identities = 43/232 (18%), Positives = 79/232 (34%), Gaps = 4/232 (1%)

Query: 57  LPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQV 116
             + T+                  +  +  ++L++     ++   +F     L  L L  
Sbjct: 55  CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114

Query: 117 NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIG 176
             +  + P     ++ L+YL L  N+          +L  L  L+L  N+ S        
Sbjct: 115 CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174

Query: 177 HLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHN 236
            L  ++ L L +N+++   PH    L  L  L L +N L      +L  L  L  L L++
Sbjct: 175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234

Query: 237 NSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFS 288
           N       +       L      ++++  S+P     L   D   L  N   
Sbjct: 235 NPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQ 282

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 65.2 bits (157), Expect = 1e-11
 Identities = 65/330 (19%), Positives = 109/330 (33%), Gaps = 26/330 (7%)

Query: 395 KSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNK 454
           +    L+L+   LS S+P    +L +L      S   L  +P    +LKSL         
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHLESLVA----SCNSLTELPELPQSLKSLLVDNNNLKA 92

Query: 455 LSNSIS----HSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNL 510
           LS+         + N     L  L +++   +I  +  +L KL  L  S   +      L
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 511 RNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVS 570
             L  L  L         N S        L+   +   N   +   +    P L T    
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 571 VNNIIGSLPPE--------IGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQL 622
            N +                 +          +   +    +    LS L   +   N  
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 623 FGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLI 682
             ++ S       LE L++S+N+L   +P        L  L  S N  + E+P   E   
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNH-LAEVP---ELPQ 324

Query: 683 HLSELDLSHNFLGKEIPSQICNMRSLEMLN 712
           +L +L + +N L +E P    ++  L M +
Sbjct: 325 NLKQLHVEYNPL-REFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 55.2 bits (131), Expect = 2e-08
 Identities = 59/325 (18%), Positives = 100/325 (30%), Gaps = 27/325 (8%)

Query: 347 KSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENK 406
           +    LEL +  LSS +P    +L +L       NSL+  +P    +LKSL   + +   
Sbjct: 38  RQAHELELNNLGLSS-LPELPPHLESL---VASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 407 LSGSIPH-SLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGN 465
           LS   P      ++N  +  L        +     +  SL +L      L    + +   
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 466 LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNH 525
                L  L            L  L  L +   S       +  L  L NL  L      
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 526 LTCNISESFGIHPKLTFIDL-----------SHNNFYGQISSDWGKCPNLGTFDVSVNNI 574
                +                             F     + +     L      +N  
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 575 IGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLI 634
              +         L  +++S N +I ++P+   +L    +LI   N L  ++P    +  
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHL-AEVPELPQN-- 325

Query: 635 QLEYLDLSSNRLSN--SIPRSLGNL 657
            L+ L +  N L     IP S+ +L
Sbjct: 326 -LKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 54.1 bits (128), Expect = 4e-08
 Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 9/93 (9%)

Query: 185 HLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIP 244
             + N  S  I        SL EL +++N L   +P     L     L    N L+  +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVP 320

Query: 245 SEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNL 277
               NLK L    +  N L    P    ++ +L
Sbjct: 321 ELPQNLKQLH---VEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.5 bits (124), Expect = 1e-07
 Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 9/93 (9%)

Query: 329 YLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIP 388
             Y N+ S  I S      SL  L +++N+L   +P     L  L       N L+  +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERL---IASFNHLA-EVP 320

Query: 389 SEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNL 421
               NLK    L +  N L    P    ++ +L
Sbjct: 321 ELPQNLKQ---LHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.5 bits (124), Expect = 1e-07
 Identities = 51/315 (16%), Positives = 90/315 (28%), Gaps = 25/315 (7%)

Query: 419 TNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNA 478
                L L +N  L S+P    +L+S   L    N L+  +     +L  + +      A
Sbjct: 38  RQAHELEL-NNLGLSSLPELPPHLES---LVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 479 L------------SGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHL 526
           L            S    E+L  L   + L + D              +L  +    N L
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 527 TCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSS 586
                          + D +       +                +  +          + 
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 587 QLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRL 646
              +  L       +  +      + +  + +         +    L +L       N  
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 647 SNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMR 706
           SN I         L  LN+S N+ + E+P        L  L  S N L  E+P    N  
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNK-LIELP---ALPPRLERLIASFNHL-AEVPELPQN-- 325

Query: 707 SLEMLNLSHNNLSDF 721
            L+ L++ +N L +F
Sbjct: 326 -LKQLHVEYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.7 bits (122), Expect = 2e-07
 Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 9/93 (9%)

Query: 233 YLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIP 292
             + N+ S  I S      SL  L + NNKL   +P     L  L       N  +  +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLI---ASFNHLAE-VP 320

Query: 293 SEIGNLKSLSILELGENRLNGSIPLSLGNLTNL 325
               NLK L    +  N L    P    ++ +L
Sbjct: 321 ELPQNLKQLH---VEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.2 bits (118), Expect = 6e-07
 Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 9/96 (9%)

Query: 376 FYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSI 435
              Y N+ S  I S      SL  L++S NKL   +P     L  L      S   L  +
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLIA----SFNHLAEV 319

Query: 436 PREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTL 471
           P    NLK   +L +  N L         ++  + +
Sbjct: 320 PELPQNLK---QLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 9/93 (9%)

Query: 281 YLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIP 340
               N+ S+ I S      SL  L +  N+L   +P     L  L       N L+  +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLI---ASFNHLA-EVP 320

Query: 341 SEIGNLKSLSGLELADNELSSSIPHYLGNLTNL 373
               NLK L    +  N L    P    ++ +L
Sbjct: 321 ELPQNLKQLH---VEYNPL-REFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.3 bits (113), Expect = 2e-06
 Identities = 24/137 (17%), Positives = 42/137 (30%), Gaps = 9/137 (6%)

Query: 70  PCAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGN 129
           P +   ++       +   L        + +  FS    L      +N     I      
Sbjct: 223 PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDL 282

Query: 130 ISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKN 189
              L+ L++S+N     +P        L+ L  S N  +  +P    +L     LH+  N
Sbjct: 283 PPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQNLKQ---LHVEYN 334

Query: 190 QLSGPIPHEVGGLSSLN 206
            L    P     +  L 
Sbjct: 335 PLRE-FPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 56/312 (17%), Positives = 98/312 (31%), Gaps = 25/312 (8%)

Query: 443 KSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQ 502
           +   EL+L +  LS S+     +L     L    N+L+  +PE   +L  L +   +   
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHLES---LVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 503 LQGSIPNLR-------NLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQIS 555
           L    P L         L  L  L+ +      ++  +           L          
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 556 SDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKL 615
            +  +  NL        +            S   ++  +           +  L+++   
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 616 ILRRNQLFGQLPSELGSLIQLEYLD-----LSSNRLSNSIPRSLGNLVKLHYLNLSTNQF 670
                 L    PS     ++  YL        S    +        L +L       N  
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 671 IQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMN 730
             EI    +    L EL++S+N L  E+P+       LE L  S N+L++ +P   E   
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKL-IELPALPPR---LERLIASFNHLAE-VP---ELPQ 324

Query: 731 GLLYIDISYNEL 742
            L  + + YN L
Sbjct: 325 NLKQLHVEYNPL 336

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 63.1 bits (152), Expect = 1e-11
 Identities = 37/219 (16%), Positives = 74/219 (33%), Gaps = 22/219 (10%)

Query: 465 NLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRN 524
            L +   +A   + ++  + +   +L  +T L+     +  +I  ++ L NLI L L  N
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDN 73

Query: 525 HLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPN--------------LGTFDVS 570
            +T               +  +       I+                        +    
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 571 VNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSEL 630
           +   +  +      +   ++  LS  +      + +  LS L  L    N++     S L
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPL 191

Query: 631 GSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQ 669
            SL  L  + L +N++S+  P  L N   L  + L+ NQ
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT-NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 4e-07
 Identities = 40/216 (18%), Positives = 76/216 (35%), Gaps = 22/216 (10%)

Query: 225 NLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRN 284
            L N   +    ++++ ++     +L  +++L+     +  +I   +  L NL  L L++
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKD 72

Query: 285 NSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIG 344
           N  +   P +     +   L     +   +I       T   T    T+    +  S + 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 345 NLKSLSGLELADNEL--------------SSSIPHYLGNLTNLAAFYLYKNSLSGSIPSE 390
            L          + L                S    L NL+ L       N +S   P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 391 IGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYL 426
           + +L +L  + L  N++S   P  L N +NL I+ L
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.3 bits (116), Expect = 5e-07
 Identities = 40/226 (17%), Positives = 77/226 (34%), Gaps = 17/226 (7%)

Query: 297 NLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELAD 356
            L +   +  G++ +  ++  +  +L  + TL  +   ++      +  L +L GLEL D
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 357 NELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLG 416
           N+++   P                     +I                 +    +   +L 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 417 NLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYD 476
            L        + + L G    +  +                S    L NL+ +T L   D
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLS----------IGNAQVSDLTPLANLSKLTTLKADD 182

Query: 477 NALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLN 522
           N +S + P  L +L  L  + L +NQ+   +  L N +NL  + L 
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISD-VSPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 3e-06
 Identities = 39/218 (17%), Positives = 72/218 (33%), Gaps = 22/218 (10%)

Query: 249 NLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGE 308
            L +   +A G + +  ++     +L  + TL       ++     +  L +L  LEL +
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 309 NRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLG 368
           N++    PL          L         +I                 +    +    L 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 369 NLTNLAAFYLYKNSL--------------SGSIPSEIGNLKSLSNLDLSENKLSGSIPHS 414
            L          + L                S  + + NL  L+ L   +NK+S   P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 415 LGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGD 452
           L +L NL  ++L +N +    P  + N  +LF + L +
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 1e-05
 Identities = 35/220 (15%), Positives = 70/220 (31%), Gaps = 22/220 (10%)

Query: 101 FSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFL 160
           F   +  +   +    + +   +     ++  +  L       +      +  L+ L  L
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGL 68

Query: 161 YLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIP 220
            L  NQ +   P +         L     +    I       +        ++    +  
Sbjct: 69  ELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128

Query: 221 PSLGNLTNLAILYLHNNSL--------------SGSIPSEIGNLKSLSSLALGNNKLCGS 266
            +L  L        + + L                S  + + NL  L++L   +NK+   
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI 188

Query: 267 IPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILEL 306
            PL   +L NL  ++L+NN  S   P  + N  +L I+ L
Sbjct: 189 SPL--ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 2e-05
 Identities = 32/197 (16%), Positives = 60/197 (30%), Gaps = 20/197 (10%)

Query: 102 SFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLY 161
           + +    +  L      +  I    +  ++ L  L+L  N  +   P +         L 
Sbjct: 36  TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELS 93

Query: 162 LSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFL------ 215
            +  +    I       +         +         +  L          + L      
Sbjct: 94  GNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNL 153

Query: 216 --------KGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSI 267
                   + S    L NL+ L  L   +N +S   P  + +L +L  + L NN++    
Sbjct: 154 QYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS 211

Query: 268 PLFLGNLTNLDTLYLRN 284
           PL   N +NL  + L N
Sbjct: 212 PL--ANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 5e-05
 Identities = 35/226 (15%), Positives = 68/226 (30%), Gaps = 17/226 (7%)

Query: 369 NLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHS 428
            L N       K++++ ++     +L  ++ L      ++ +I   +  L NL  L L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKD 72

Query: 429 NTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELG 488
           N +    P +     +  EL     K  ++I+      T         +         L 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 489 NLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHN 548
            L        + + L G                +  +   +         KLT +    N
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYL---------SIGNAQVSDLTPLANLSKLTTLKADDN 183

Query: 549 NFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLS 594
                  S     PNL    +  N I       + ++S L ++ L+
Sbjct: 184 KISD--ISPLASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 7e-05
 Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 60  WTLNNATKISPCAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQI 119
             L+N   +        + + +  + ++   ++G          ++   L  L    N+I
Sbjct: 126 AGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKI 185

Query: 120 FGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQ 166
             I P  + ++  L  + L +N  S   P  + N S L  + L+ NQ
Sbjct: 186 SDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT-NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 2e-04
 Identities = 31/242 (12%), Positives = 73/242 (30%), Gaps = 18/242 (7%)

Query: 497 TLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISS 556
           +++       I     L N I++   ++++T  ++++      +T +             
Sbjct: 2   SITQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADL--DGITTLSAFGTGVTT--IE 57

Query: 557 DWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLI 616
                 NL   ++  N I    P +         +  +    +  I       +  +   
Sbjct: 58  GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST 117

Query: 617 LRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPI 676
              +       S L  L        + + L+             +   LS          
Sbjct: 118 QITDVTPLAGLSNLQVLYLDLNQITNISPLAGLT----------NLQYLSIGNAQVSDLT 167

Query: 677 KLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYID 736
            L  L  L+ L    N +    P  + ++ +L  ++L +N +SD  P      + L  + 
Sbjct: 168 PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVT 223

Query: 737 IS 738
           ++
Sbjct: 224 LT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 7e-04
 Identities = 36/228 (15%), Positives = 77/228 (33%), Gaps = 18/228 (7%)

Query: 129 NISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFK 188
            ++    +    ++ + T+     +L  +  L       +      + +L+ +  L L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72

Query: 189 NQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIG 248
           NQ++   P +     +  EL+        +I       T         +    +  S + 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 249 NLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGE 308
            L                I          +  YL   +   S  + + NL  L+ L+  +
Sbjct: 133 VL----------YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD 182

Query: 309 NRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELAD 356
           N+++   PL   +L NL  ++L  N +S   P  + N  +L  + L +
Sbjct: 183 NKISDISPL--ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 40/215 (18%), Positives = 71/215 (33%), Gaps = 22/215 (10%)

Query: 178 LSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNN 237
           L+    +   K+ ++  +      L  +  L+     +       +  L NL  L L +N
Sbjct: 18  LANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDN 73

Query: 238 SLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGN 297
            ++   P +     +   L+    K   +I       T   T     +    +  S +  
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 298 LKSLSILELGENRL--------------NGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI 343
           L          + L                S    L NL+ L TL    N +S   P  +
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--L 191

Query: 344 GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYL 378
            +L +L  + L +N++S   P  L N +NL    L
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.2 bits (152), Expect = 2e-11
 Identities = 47/211 (22%), Positives = 73/211 (34%), Gaps = 8/211 (3%)

Query: 77  HCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYL 136
             + V     +N     L     D           L L  N ++      +   ++L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLP----KDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 137 DLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIP 196
           +L       T     G L +L      ++     +P     L  +  L +  N+L+    
Sbjct: 61  NLDRAEL--TKLQVDGTLPVL-GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 197 HEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSL 256
             + GL  L EL L  N LK   P  L     L  L L NN+L+      +  L++L +L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 257 ALGNNKLCGSIPLFLGNLTNLDTLYLRNNSF 287
            L  N L  +IP        L   +L  N +
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (150), Expect = 3e-11
 Identities = 45/190 (23%), Positives = 66/190 (34%), Gaps = 7/190 (3%)

Query: 483 IPEELGNLVKLTMLTLSDNQLQGSIPN-LRNLTNLIRLRLNRNHLTCNISESFGIHPKLT 541
           +P +L      T+L LS+N L       L   T L +L L+R  LT            + 
Sbjct: 25  LPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ---VDGTLPVL 79

Query: 542 FIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGK 601
                 +N    +       P L   DVS N +       +    +L  + L  N +   
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139

Query: 602 IPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLH 661
            P  +     L KL L  N L       L  L  L+ L L  N L  +IP+       L 
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLP 198

Query: 662 YLNLSTNQFI 671
           +  L  N ++
Sbjct: 199 FAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.3 bits (147), Expect = 9e-11
 Identities = 45/190 (23%), Positives = 63/190 (33%), Gaps = 6/190 (3%)

Query: 123 IPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIE 182
           +PP +        L LS N         +   + L  L L   + +         +    
Sbjct: 25  LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82

Query: 183 ALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGS 242
            L   + Q    +   +  L+ L+    + N L      +L  L  L  LYL  N L   
Sbjct: 83  DLSHNQLQSLPLLGQTLPALTVLDV---SFNRLTSLPLGALRGLGELQELYLKGNELKTL 139

Query: 243 IPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLS 302
            P  +     L  L+L NN L       L  L NLDTL L+ NS   +IP        L 
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL-YTIPKGFFGSHLLP 198

Query: 303 ILELGENRLN 312
              L  N   
Sbjct: 199 FAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (146), Expect = 1e-10
 Identities = 51/210 (24%), Positives = 76/210 (36%), Gaps = 7/210 (3%)

Query: 246 EIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILE 305
           E+  + S   +      L  ++P  L    +   L+L  N   +   + +     L+ L 
Sbjct: 5   EVSKVASHLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 306 LGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPH 365
           L  +R   +     G L  L TL L  N L            +L+ L+++ N L+S    
Sbjct: 62  L--DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTL-PALTVLDVSFNRLTSLPLG 118

Query: 366 YLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILY 425
            L  L  L   YL  N L    P  +     L  L L+ N L+      L  L NL  L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 426 LHSNTLLGSIPREIGNLKSLFELQLGDNKL 455
           L  N+L  +IP+       L    L  N  
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 2e-09
 Identities = 46/212 (21%), Positives = 74/212 (34%), Gaps = 6/212 (2%)

Query: 318 SLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFY 377
            +  + +   +     +L+ ++P ++   K  + L L++N L +     L   T L    
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLT--Q 59

Query: 378 LYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPR 437
           L  +    +     G L  L  LDLS N+L               +  +  N L      
Sbjct: 60  LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL-DVSFNRLTSLPLG 118

Query: 438 EIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLT 497
            +  L  L EL L  N+L       L     +  L+L +N L+ +    L  L  L  L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 498 LSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCN 529
           L +N L            L    L+ N   CN
Sbjct: 179 LQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 2e-05
 Identities = 40/193 (20%), Positives = 73/193 (37%), Gaps = 24/193 (12%)

Query: 572 NNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELG 631
              + +LPP++       ++ LS N +     + +   + L +L L R +L         
Sbjct: 19  KRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL 76

Query: 632 SLIQL---------------------EYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQF 670
            ++                         LD+S NRL++    +L  L +L  L L  N+ 
Sbjct: 77  PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136

Query: 671 IQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMN 730
               P  L     L +L L++N L +     +  + +L+ L L  N+L   IP+ F   +
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSH 195

Query: 731 GLLYIDISYNELH 743
            L +  +  N   
Sbjct: 196 LLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 3e-05
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 605 EIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLN 664
           E+ K++S +++   +  L   LP +L        L LS N L      +L    +L  LN
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 665 LSTNQFIQ 672
           L   +  +
Sbjct: 62  LDRAELTK 69

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 4e-04
 Identities = 21/130 (16%), Positives = 38/130 (29%), Gaps = 1/130 (0%)

Query: 62  LNNATKISPCAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFG 121
           L                       ++   +     +L   +      L  L L+ N++  
Sbjct: 79  LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138

Query: 122 IIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYI 181
           + P  +    KL+ L L++N+ +      +  L  L  L L  N     IP        +
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197

Query: 182 EALHLFKNQL 191
               L  N  
Sbjct: 198 PFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 684 LSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 743
             E++     L   +P  +   +   +L+LS N L  F          L  +++   EL 
Sbjct: 12  HLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (135), Expect = 6e-09
 Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 10/120 (8%)

Query: 634 IQLEYLDLSSNRLSNS-IPRSLGNLVKLHYLNLSTNQF----IQEIPIKLEKLIHLSELD 688
           + ++ LD+    LS++     L  L +   + L          ++I   L     L+EL+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 689 LSHNFLGKEIPSQIC-----NMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 743
           L  N LG      +          ++ L+L +  L+             L      +   
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 121

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 1e-06
 Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 9/80 (11%)

Query: 659 KLHYLNLSTNQF----IQEIPIKLEKLIHLSELDLSHNFLGKEIPSQIC-----NMRSLE 709
            L  L L+           +   L     L ELDLS+N LG     Q+          LE
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 710 MLNLSHNNLSDFIPRCFEEM 729
            L L     S+ +    + +
Sbjct: 430 QLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 2e-06
 Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 10/96 (10%)

Query: 585 SSQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQL----FGQLPSELGSLIQLEYL 639
           S  +  +D+    +     +E+   L     + L    L       + S L     L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 640 DLSSNRLSNSIPRSLG-----NLVKLHYLNLSTNQF 670
           +L SN L +     +         K+  L+L     
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 3e-06
 Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 5/91 (5%)

Query: 228 NLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKL----CGSIPLFLGNLTNLDTLYL 282
           ++  L +    LS +  +E+   L+    + L +  L    C  I   L     L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 283 RNNSFSSSIPSEIGNLKSLSILELGENRLNG 313
           R+N         +         ++ +  L  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 7e-06
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 9/81 (11%)

Query: 610 SSLIKLILRRNQLFGQ----LPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVK-----L 660
           S L  L L    +       L + L +   L  LDLS+N L ++    L   V+     L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 661 HYLNLSTNQFIQEIPIKLEKL 681
             L L    + +E+  +L+ L
Sbjct: 429 EQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 8e-06
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 15/94 (15%)

Query: 635 QLEYLDLSSNRLSN----SIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLI-----HLS 685
            L  L L+   +S+    S+  +L     L  L+LS N       ++L + +      L 
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 686 ELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLS 719
           +L L   +  +E+         L+ L     +L 
Sbjct: 430 QLVLYDIYWSEEME------DRLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 1e-05
 Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 5/96 (5%)

Query: 276 NLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGENRLNG----SIPLSLGNLTNLDTLYL 330
           ++ +L ++    S +  +E+   L+   ++ L +  L       I  +L     L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 331 YTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHY 366
            +N L       +         ++    L +     
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 2e-05
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 5/91 (5%)

Query: 396 SLSNLDLSENKLSGS-IPHSLGNLTNLAILYLHSNTL----LGSIPREIGNLKSLFELQL 450
            + +LD+   +LS +     L  L    ++ L    L       I   +    +L EL L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 451 GDNKLSNSISHSLGNLTHMTLLALYDNALSG 481
             N+L +   H +          +   +L  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 2e-05
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 13/93 (13%)

Query: 225 NLTNLAILYLHNNSLSG----SIPSEIGNLKSLSSLALGNNKLCGSIPLFLG-----NLT 275
             + L +L+L +  +S     S+ + +    SL  L L NN L  +  L L         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 276 NLDTLYLRNNSFSSSIPSEIGNLK----SLSIL 304
            L+ L L +  +S  +   +  L+    SL ++
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 3e-05
 Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 5/95 (5%)

Query: 324 NLDTLYLYTNSLSGSIPSEI-GNLKSLSGLELADNELS----SSIPHYLGNLTNLAAFYL 378
           ++ +L +    LS +  +E+   L+    + L D  L+      I   L     LA   L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 379 YKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPH 413
             N L       +       +  + +  L      
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 3e-05
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 13/95 (13%)

Query: 345 NLKSLSGLELADNELSSS-IPHYLGNLTNLAAFYLYKNSLSG----SIPSEIGNLKSLSN 399
           +++SL   ++   ELS +     L  L       L    L+      I S +    +L+ 
Sbjct: 3   DIQSL---DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 400 LDLSENKLSGSIPHSLG-----NLTNLAILYLHSN 429
           L+L  N+L     H +          +  L L + 
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 3e-05
 Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 9/85 (10%)

Query: 586 SQLHVIDLSANHI----IGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQ-----L 636
           S L V+ L+   +       + + +    SL +L L  N L      +L   ++     L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 637 EYLDLSSNRLSNSIPRSLGNLVKLH 661
           E L L     S  +   L  L K  
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 5e-05
 Identities = 18/119 (15%), Positives = 33/119 (27%), Gaps = 9/119 (7%)

Query: 69  SPCAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQI----FGIIP 124
              +    +   +    S N         L          L  L L    +       + 
Sbjct: 331 HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 390

Query: 125 PQIGNISKLKYLDLSSNSFSGTIPPQIG-----NLSMLKFLYLSANQFSGRIPPQIGHL 178
             +     L+ LDLS+N        Q+         +L+ L L    +S  +  ++  L
Sbjct: 391 ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 6e-05
 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 9/84 (10%)

Query: 273 NLTNLDTLYLRNNSFS----SSIPSEIGNLKSLSILELGENRLNGSIPLSLG-----NLT 323
             + L  L+L +   S    SS+ + +    SL  L+L  N L  +  L L         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 324 NLDTLYLYTNSLSGSIPSEIGNLK 347
            L+ L LY    S  +   +  L+
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 1e-04
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 5/95 (5%)

Query: 372 NLAAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSENKLSG----SIPHSLGNLTNLAILYL 426
           ++ +  +    LS +  +E+   L+    + L +  L+      I  +L     LA L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 427 HSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISH 461
            SN L       +         ++    L N    
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 2e-04
 Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 9/97 (9%)

Query: 356 DNELSSSIPHYLGNLTNLAAFYLYKNSLSG----SIPSEIGNLKSLSNLDLSENKLSGSI 411
           D  +           + L   +L    +S     S+ + +    SL  LDLS N L  + 
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 412 PHSLG-----NLTNLAILYLHSNTLLGSIPREIGNLK 443
              L          L  L L+       +   +  L+
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 3e-04
 Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 9/83 (10%)

Query: 249 NLKSLSSLALGNNKL----CGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIG-----NLK 299
               L  L L +  +    C S+   L    +L  L L NN    +   ++         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 300 SLSILELGENRLNGSIPLSLGNL 322
            L  L L +   +  +   L  L
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 6e-04
 Identities = 11/94 (11%), Positives = 28/94 (29%), Gaps = 5/94 (5%)

Query: 109 LAYLDLQVNQIFGIIPPQI-GNISKLKYLDLSSNSFSG----TIPPQIGNLSMLKFLYLS 163
           +  LD+Q  ++      ++   + + + + L     +      I   +     L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 164 ANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPH 197
           +N+        +       +  + K  L      
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 0.001
 Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 9/87 (10%)

Query: 129 NISKLKYLDLSSNSFSGT----IPPQIGNLSMLKFLYLSANQFSGRIPPQIG-----HLS 179
             S L+ L L+    S +    +   +     L+ L LS N        Q+         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 180 YIEALHLFKNQLSGPIPHEVGGLSSLN 206
            +E L L+    S  +   +  L    
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 0.001
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 9/85 (10%)

Query: 417 NLTNLAILYLHSNTL----LGSIPREIGNLKSLFELQLGDNKLSNSISHSLG-----NLT 467
             + L +L+L    +      S+   +    SL EL L +N L ++    L         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 468 HMTLLALYDNALSGVIPEELGNLVK 492
            +  L LYD   S  + + L  L K
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.002
 Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 5/90 (5%)

Query: 133 LKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGR----IPPQIGHLSYIEALHLF 187
           ++ LD+     S     ++   L   + + L     +      I   +     +  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 188 KNQLSGPIPHEVGGLSSLNELALTSNFLKG 217
            N+L     H V          +    L+ 
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 5/90 (5%)

Query: 181 IEALHLFKNQLS-GPIPHEVGGLSSLNELALTSNFLKG----SIPPSLGNLTNLAILYLH 235
           I++L +   +LS       +  L     + L    L       I  +L     LA L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 236 NNSLSGSIPSEIGNLKSLSSLALGNNKLCG 265
           +N L       +       S  +    L  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.004
 Identities = 18/124 (14%), Positives = 34/124 (27%), Gaps = 25/124 (20%)

Query: 444 SLFELQLGDNKLSNS-ISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQ 502
            +  L +   +LS++  +  L  L    ++ L D  L+    +++ +             
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA------------ 50

Query: 503 LQGSIPNLRNLTNLIRLRLNRNHLTCNISESFG-----IHPKLTFIDLSHNNFYGQISSD 557
                  LR    L  L L  N L                 K+  + L +    G     
Sbjct: 51  -------LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 103

Query: 558 WGKC 561
               
Sbjct: 104 LSST 107

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.0 bits (131), Expect = 6e-09
 Identities = 35/202 (17%), Positives = 66/202 (32%), Gaps = 15/202 (7%)

Query: 465 NLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRN 524
                    L   +++  + +    L  +  +  +++ ++ S+  ++ L N+ +L LN N
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLNGN 78

Query: 525 HLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGD 584
            LT     +   +    F+D +       +               S+ +   S    +  
Sbjct: 79  KLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL------SLEHNGISDINGLVH 132

Query: 585 SSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSN 644
             QL  + L  N I                  L            L  L +L+ L LS N
Sbjct: 133 LPQLESLYLGNNKITDITVLSRLT----KLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN 188

Query: 645 RLSNSIPRSLGNLVKLHYLNLS 666
            +S+   R+L  L  L  L L 
Sbjct: 189 HISD--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 3e-07
 Identities = 36/204 (17%), Positives = 64/204 (31%), Gaps = 16/204 (7%)

Query: 225 NLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRN 284
                    L   S++ ++      L S+  +   N+ +     +    L N+  L+L  
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGI--QYLPNVTKLFLNG 77

Query: 285 NSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIG 344
           N  +         L +L  L       N    LS              ++    I   + 
Sbjct: 78  NKLTDIK-----PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVH 132

Query: 345 NLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSE 404
             +  S     +     ++   L  L  L+      + +       +  L  L NL LS+
Sbjct: 133 LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-----PLAGLTKLQNLYLSK 187

Query: 405 NKLSGSIPHSLGNLTNLAILYLHS 428
           N +S     +L  L NL +L L S
Sbjct: 188 NHISD--LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 40/201 (19%), Positives = 66/201 (32%), Gaps = 15/201 (7%)

Query: 321 NLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYK 380
                    L   S++ ++      L S+  +   ++++ S     +  L N+   +L  
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 381 NSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIG 440
           N L+   P        L+NL                +           +     I    G
Sbjct: 78  NKLTDIKP--------LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING 129

Query: 441 NLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSD 500
            +       L       +    L  LT +  L+L DN +S ++P  L  L KL  L LS 
Sbjct: 130 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187

Query: 501 NQLQGSIPNLRNLTNLIRLRL 521
           N +   +  L  L NL  L L
Sbjct: 188 NHIS-DLRALAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.2 bits (108), Expect = 6e-06
 Identities = 27/193 (13%), Positives = 60/193 (31%), Gaps = 21/193 (10%)

Query: 369 NLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHS 428
                    L K S++ ++      L S+  +  + + +       +  L N+  L+L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNG 77

Query: 429 NTLLG---------------SIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLA 473
           N L                    +           +L    L ++    +  L H+  L 
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 474 LYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISES 533
                 + +    + + +        ++     I  L  LT L  L L++NH++     +
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRA 195

Query: 534 FGIHPKLTFIDLS 546
                 L  ++L 
Sbjct: 196 LAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 34/206 (16%), Positives = 72/206 (34%), Gaps = 16/206 (7%)

Query: 101 FSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFL 160
           FS  +F      +L+   +   +      ++ +  +  +++         I  L  +  L
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKL 73

Query: 161 YLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIP 220
           +L+ N+ +            +  L             +        +   + +     I 
Sbjct: 74  FLNGNKLTDIK--------PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS 125

Query: 221 PSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTL 280
              G +    +  L+  +   +  + +  L  L +L+L +N++   +PL    LT L  L
Sbjct: 126 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNL 183

Query: 281 YLRNNSFSSSIPSEIGNLKSLSILEL 306
           YL  N  S      +  LK+L +LEL
Sbjct: 184 YLSKNHISD--LRALAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 34/203 (16%), Positives = 62/203 (30%), Gaps = 16/203 (7%)

Query: 273 NLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYT 332
                    L+  S + ++      L S+  +    + +     +    L N+  L+L  
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNG 77

Query: 333 NSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIG 392
           N L+   P        L+ L+               +           +     I    G
Sbjct: 78  NKLTDIKP--------LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING 129

Query: 393 NLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGD 452
            +       L       +    L  LT L  L L  N +   +P  +  L  L  L L  
Sbjct: 130 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187

Query: 453 NKLSNSISHSLGNLTHMTLLALY 475
           N +S+    +L  L ++ +L L+
Sbjct: 188 NHISD--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 7e-04
 Identities = 42/215 (19%), Positives = 75/215 (34%), Gaps = 22/215 (10%)

Query: 242 SIPSEIG------NLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEI 295
           ++P+ I                L    +  ++      L ++D +   N+   S     I
Sbjct: 9   TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQG--I 64

Query: 296 GNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELA 355
             L +++ L L  N+L    PL+         L             +  +         +
Sbjct: 65  QYLPNVTKLFLNGNKLTDIKPLA--------NLKNLGWLFLDENKVKDLSSLKDLKKLKS 116

Query: 356 DNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSL 415
            +   + I    G +       LY  +   +  + +  L  L  L L +N++S  +P  L
Sbjct: 117 LSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--L 174

Query: 416 GNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQL 450
             LT L  LYL  N +  S  R +  LK+L  L+L
Sbjct: 175 AGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 39/203 (19%), Positives = 70/203 (34%), Gaps = 16/203 (7%)

Query: 201 GLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGN 260
             +   +  L    +  ++  +   L ++  +  +N+ +       I  L +++ L L  
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 261 NKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLG 320
           NKL             L  L      F      +  +           +  +  I    G
Sbjct: 78  NKLTDIK--------PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING 129

Query: 321 NLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYK 380
            +       LY  +   +  + +  L  L  L L DN++S  +P  L  LT L   YL K
Sbjct: 130 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187

Query: 381 NSLSGSIPSEIGNLKSLSNLDLS 403
           N +S      +  LK+L  L+L 
Sbjct: 188 NHISD--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 41/218 (18%), Positives = 71/218 (32%), Gaps = 22/218 (10%)

Query: 288 SSSIPSEIG------NLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPS 341
           + ++P+ I                L +  +  ++  +   L ++D +    + +      
Sbjct: 7   TITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG- 63

Query: 342 EIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLD 401
            I  L +++ L L  N+L+      L NL NL   +L +N     +              
Sbjct: 64  -IQYLPNVTKLFLNGNKLTD--IKPLANLKNLGWLFLDENK----VKDLSSLKDLKKLKS 116

Query: 402 LSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISH 461
           LS      S  + L +L  L  LYL +N +                          S   
Sbjct: 117 LSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLS----LEDNQISDIV 172

Query: 462 SLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLS 499
            L  LT +  L L  N +S +    L  L  L +L L 
Sbjct: 173 PLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.004
 Identities = 28/212 (13%), Positives = 68/212 (32%), Gaps = 20/212 (9%)

Query: 505 GSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWG--KCP 562
             I +       I+  L +  +T  ++++      +  I  ++++    I S  G    P
Sbjct: 15  KQIFSDDAFAETIKDNLKKKSVTDAVTQNEL--NSIDQIIANNSD----IKSVQGIQYLP 68

Query: 563 NLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQL 622
           N+    ++ N +       I   + L  +                K    +K +   +  
Sbjct: 69  NVTKLFLNGNKLTD-----IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNG 123

Query: 623 FGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLI 682
              +   +           ++     ++   L             +  I +I   L  L 
Sbjct: 124 ISDINGLVHLPQLESLYLGNNKITDITVLSRLTK----LDTLSLEDNQISDIV-PLAGLT 178

Query: 683 HLSELDLSHNFLGKEIPSQICNMRSLEMLNLS 714
            L  L LS N +  ++ + +  +++L++L L 
Sbjct: 179 KLQNLYLSKNHI-SDLRA-LAGLKNLDVLELF 208

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 2e-08
 Identities = 37/264 (14%), Positives = 73/264 (27%), Gaps = 20/264 (7%)

Query: 400 LDLSENKLSGSIPHSLGNLTNLAILYLH-SNTLLGSIPREIGNLKSLFELQLGDNKLS-N 457
           LDL+   L    P   G L +  ++      + +     E  +   +  + L ++ +  +
Sbjct: 5   LDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 458 SISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLI 517
           ++   L   + +  L+L    LS  I   L     L  L LS             L++  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 518 RLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGS 577
           RL         + +E               +        +                +   
Sbjct: 122 RLDELNLSWCFDFTEKHVQVA-------VAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 174

Query: 578 LPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRR-NQLFGQLPSELGSLIQL 636
                 D S   ++         ++         L  L L R   +  +   ELG +  L
Sbjct: 175 PNLVHLDLSDSVMLKNDCFQEFFQLNY-------LQHLSLSRCYDIIPETLLELGEIPTL 227

Query: 637 EYLDLSSNRLSNSIPRSLGNLVKL 660
           + L +       ++      L  L
Sbjct: 228 KTLQVFGIVPDGTLQLLKEALPHL 251

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 2e-07
 Identities = 33/269 (12%), Positives = 81/269 (30%), Gaps = 15/269 (5%)

Query: 494 TMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYG- 552
             L L+   L   +        +I  R  R+ +   ++E F    ++  +DLS++     
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVS 61

Query: 553 QISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSL 612
            +     +C  L    +    +   +   +  +S L  ++LS      +   +    S  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 613 IKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQ 672
               L  +  F      +   +      ++   LS        + +            + 
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 673 ---------EIPIKLEKLIHLSELDLSH-NFLGKEIPSQICNMRSLEMLNLSHNNLSDFI 722
                    +   +  +L +L  L LS    +  E   ++  + +L+ L +        +
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 723 PRCFEEMNGLLYIDISYNELHGPIPNSTA 751
               E    L ++ I+ +        +  
Sbjct: 242 QLLKE---ALPHLQINCSHFTTIARPTIG 267

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 8e-07
 Identities = 35/239 (14%), Positives = 71/239 (29%), Gaps = 14/239 (5%)

Query: 123 IPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGRIPPQIGHLSYI 181
              +  +  +++++DLS++    +    I    S L+ L L   + S  I   +   S +
Sbjct: 38  PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL 97

Query: 182 EALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSG 241
             L+L           +    S      L  ++        +          +   +LSG
Sbjct: 98  VRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 157

Query: 242 ---------SIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRN-NSFSSSI 291
                               +      +  L          L  L  L L          
Sbjct: 158 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET 217

Query: 292 PSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLS 350
             E+G + +L  L++     +G++ L    L +L    +  +  +      IGN K+  
Sbjct: 218 LLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGNKKNQE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 2e-06
 Identities = 35/274 (12%), Positives = 79/274 (28%), Gaps = 16/274 (5%)

Query: 136 LDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSG-P 194
           LDL+  +    +  ++ +   +       +     +         ++ + L  + +    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVST 62

Query: 195 IPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLH--NNSLSGSIPSEIGNLKS 252
           +   +   S L  L+L    L   I  +L   +NL  L L   +     ++ + + +   
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 253 LSSL-------ALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILE 305
           L  L           +       +         + Y +N   S            + +  
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 306 LGENRLNGSIPLSLGNLTNLDTLYL-YTNSLSGSIPSEIGNLKSLSGLELADNELSSSIP 364
                L          L  L  L L     +      E+G + +L  L++       ++ 
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

Query: 365 HYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLS 398
                L +L    +  +  +      IGN K+  
Sbjct: 243 LLKEALPHLQ---INCSHFTTIARPTIGNKKNQE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 2e-06
 Identities = 43/234 (18%), Positives = 77/234 (32%), Gaps = 13/234 (5%)

Query: 83  RVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNS 142
           RV  ++L+N  ++ +      S    L  L L+  ++   I   +   S L  L+LS  S
Sbjct: 47  RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 106

Query: 143 FSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGL 202
                  Q    S  +   L+ +         +       +  + +  LSG   +     
Sbjct: 107 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD 166

Query: 203 SSLNE---------LALTSNFLKGSIPPSLGNLTNLAILYLHN-NSLSGSIPSEIGNLKS 252
            S                S  LK         L  L  L L     +      E+G + +
Sbjct: 167 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 226

Query: 253 LSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILEL 306
           L +L +      G++ L    L +L    +  + F++     IGN K+  I  +
Sbjct: 227 LKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGNKKNQEIWGI 277

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 1e-05
 Identities = 38/287 (13%), Positives = 82/287 (28%), Gaps = 20/287 (6%)

Query: 160 LYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKG-S 218
           L L+       +  ++     I A    ++ +  P+  E      +  + L+++ ++  +
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVI-AFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVST 62

Query: 219 IPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLD 278
           +   L   + L  L L    LS  I + +    +L        +L  S            
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV-------RLNLSGCSGFSEFALQT 115

Query: 279 TLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGS 338
            L   +     ++       +    + +       +     G   NL    L T      
Sbjct: 116 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 175

Query: 339 IPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLS 398
               +    S+        E          +L+           +      E+G + +L 
Sbjct: 176 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC-------YDIIPETLLELGEIPTLK 228

Query: 399 NLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSL 445
            L +      G++      L +L I   + +         IGN K+ 
Sbjct: 229 TLQVFGIVPDGTLQLLKEALPHLQI---NCSHFTTIARPTIGNKKNQ 272

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 52.9 bits (125), Expect = 2e-08
 Identities = 44/178 (24%), Positives = 71/178 (39%), Gaps = 8/178 (4%)

Query: 136 LDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFKNQLSGP 194
           +D +       IP  I        L L+ N+        + G L ++  L L +NQL+G 
Sbjct: 13  VDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 69

Query: 195 IPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLS 254
            P+   G S + EL L  N +K         L  L  L L++N +S  +P    +L SL+
Sbjct: 70  EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129

Query: 255 SLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLN 312
           SL L +N    +  L       L    L   +     PS+   ++ + I +L  +   
Sbjct: 130 SLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFK 183

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 46/186 (24%), Positives = 73/186 (39%), Gaps = 8/186 (4%)

Query: 232 LYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFL-GNLTNLDTLYLRNNSFSSS 290
           +      L   IP +I      + L L +N+L       L G L +L  L L+ N  +  
Sbjct: 13  VDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 69

Query: 291 IPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLS 350
            P+       +  L+LGEN++          L  L TL LY N +S  +P    +L SL+
Sbjct: 70  EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129

Query: 351 GLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGS 410
            L LA N  + +          L    L   +     PS+   ++ +   DL  ++   S
Sbjct: 130 SLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCS 185

Query: 411 IPHSLG 416
             +S G
Sbjct: 186 SENSEG 191

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 32/159 (20%), Positives = 53/159 (33%), Gaps = 5/159 (3%)

Query: 535 GIHPKLTFIDLSHNNFYGQI-SSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDL 593
            I    T + L+ N          +G+ P+L   ++  N + G  P     +S +  + L
Sbjct: 26  DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85

Query: 594 SANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRS 653
             N I          L  L  L L  NQ+   +P     L  L  L+  ++   N     
Sbjct: 86  GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN-LASNPFNCNCHL 144

Query: 654 LGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHN 692
                 L   +L+        P    K+  +   DL H+
Sbjct: 145 AWFAEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHS 180

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 42/174 (24%), Positives = 65/174 (37%), Gaps = 28/174 (16%)

Query: 386 SIPSEIGNLKSLSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLGSIPREIGNLKS 444
            IP +I      + L L++N+L       L G L +L  L L  N L G  P        
Sbjct: 22  EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 445 LFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTM--------- 495
           + ELQLG+NK+    +     L  +  L LYDN +S V+P    +L  LT          
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 496 --------------LTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFG 535
                          +L+    +   P+   + ++    L  +   C+   S G
Sbjct: 140 CNCHLAWFAEWLRKKSLNGGAARCGAPS--KVRDVQIKDLPHSEFKCSSENSEG 191

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 43/188 (22%), Positives = 66/188 (35%), Gaps = 14/188 (7%)

Query: 71  CAWFGIHCNHVG----------RVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIF 120
           C    + C   G              + L +  L     D  F   PHL  L+L+ NQ+ 
Sbjct: 8   CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67

Query: 121 GIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSY 180
           GI P      S ++ L L  N            L  LK L L  NQ S  +P    HL+ 
Sbjct: 68  GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127

Query: 181 IEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLS 240
           + +L+L  N  +    H       L + +L     +   P  + ++    I  L ++   
Sbjct: 128 LTSLNLASNPFNC-NCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQ---IKDLPHSEFK 183

Query: 241 GSIPSEIG 248
            S  +  G
Sbjct: 184 CSSENSEG 191

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.4 bits (90), Expect = 8e-04
 Identities = 37/197 (18%), Positives = 66/197 (33%), Gaps = 31/197 (15%)

Query: 314 SIPLSLGNLTNLDTLYLYTNSLSGSIPSEI-GNLKSLSGLELADNELSSSIPHYLGNLTN 372
            IP  +    +   L L  N L       + G L  L  LEL  N+L+   P+     ++
Sbjct: 22  EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 373 LAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLL 432
           +    L +N +          L  L  L+L +N++S  +P S  +L +L  L L SN   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 433 GSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVK 492
            +                                  +   +L   A     P ++ +   
Sbjct: 140 CNCH-------------------------LAWFAEWLRKKSLNGGAARCGAPSKVRD--- 171

Query: 493 LTMLTLSDNQLQGSIPN 509
           + +  L  ++ + S  N
Sbjct: 172 VQIKDLPHSEFKCSSEN 188

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 38/180 (21%), Positives = 67/180 (37%), Gaps = 7/180 (3%)

Query: 572 NNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSEL 630
              +  +P +I        + L+ N +       + G+L  L+KL L+RNQL G  P+  
Sbjct: 17  GRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF 74

Query: 631 GSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLS 690
                ++ L L  N++     +    L +L  LNL  NQ    +P   E L  L+ L+  
Sbjct: 75  EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN-L 133

Query: 691 HNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNST 750
            +               L   +L+        P    ++  +   D+ ++E      NS 
Sbjct: 134 ASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSEFKCSSENSE 190

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 9e-07
 Identities = 27/136 (19%), Positives = 44/136 (32%), Gaps = 5/136 (3%)

Query: 396 SLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDNK 454
             S L  + +       H L    NL  LY+ +   L  +       L  L  L +  + 
Sbjct: 9   GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67

Query: 455 LSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ--GSIPNLRN 512
           L      +      ++ L L  NAL   +  +    + L  L LS N L    ++  L+ 
Sbjct: 68  LRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQR 126

Query: 513 LTNLIRLRLNRNHLTC 528
                   +    L C
Sbjct: 127 WEEEGLGGVPEQKLQC 142

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 3/110 (2%)

Query: 635 QLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEK-LIHLSELDLSHNF 693
               L  + +         L     L  L +   Q +Q + ++  + L  L  L +  + 
Sbjct: 9   GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67

Query: 694 LGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 743
           L    P        L  LNLS N L     +  + ++    + +S N LH
Sbjct: 68  LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSL-QELVLSGNPLH 116

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 4e-04
 Identities = 21/155 (13%), Positives = 42/155 (27%), Gaps = 2/155 (1%)

Query: 149 PQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNE 207
           P          L  + +         +     +  L++   Q    +      GL  L  
Sbjct: 2   PDACCPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60

Query: 208 LALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSI 267
           L +  + L+   P +      L+ L L  N+L       +  L     +  GN   C   
Sbjct: 61  LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCA 120

Query: 268 PLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLS 302
             +L          +            + ++ + S
Sbjct: 121 LRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 17/133 (12%), Positives = 35/133 (26%), Gaps = 1/133 (0%)

Query: 123 IPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGRIPPQIGHLSYI 181
               +     L  L + +      +  +    L  L+ L +  +      P        +
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 182 EALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSG 241
             L+L  N L       V GLS    +   +          L       +  +    L  
Sbjct: 83  SRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQC 142

Query: 242 SIPSEIGNLKSLS 254
                + ++ + S
Sbjct: 143 HGQGPLAHMPNAS 155

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 22/148 (14%), Positives = 40/148 (27%), Gaps = 2/148 (1%)

Query: 275 TNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIP-LSLGNLTNLDTLYLYTN 333
                L    +         +   ++L+ L +   +    +    L  L  L  L +  +
Sbjct: 8   HGSSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 334 SLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGN 393
            L    P        LS L L+ N L S     +  L+                   +  
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQR 126

Query: 394 LKSLSNLDLSENKLSGSIPHSLGNLTNL 421
            +      + E KL       L ++ N 
Sbjct: 127 WEEEGLGGVPEQKLQCHGQGPLAHMPNA 154

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.2 bits (109), Expect = 1e-06
 Identities = 32/107 (29%), Positives = 43/107 (40%), Gaps = 6/107 (5%)

Query: 615 LILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEI 674
           L L    L   +   L  L+ + +LDLS NRL    P +L  L  L  L  S N      
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 59

Query: 675 PIKLEKLIHLSELDLSHNFL-GKEIPSQICNMRSLEMLNLSHNNLSD 720
            +    L  L EL L +N L        + +   L +LNL  N+L  
Sbjct: 60  GVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.5 bits (107), Expect = 2e-06
 Identities = 22/122 (18%), Positives = 37/122 (30%), Gaps = 9/122 (7%)

Query: 134 KYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIP--PQIGHLSYIEALHLFKNQL 191
           + L L+      T+   +  L ++  L LS N+     P    +  L  ++A       +
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 192 SGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLK 251
            G           L    L       +    L +   L +L L  NSL          L 
Sbjct: 59  DGVANLPRLQELLLCNNRLQQ----SAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLA 113

Query: 252 SL 253
            +
Sbjct: 114 EM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (102), Expect = 9e-06
 Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 6/119 (5%)

Query: 400 LDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSI 459
           L L+   L+  +   L  L  +  L L  N L    P  +  L+ L  LQ  DN L N  
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 59

Query: 460 SHSLGNLTHMTLLALYDNALSGV-IPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLI 517
             +  NL  +  L L +N L      + L +  +L +L L  N L         L  ++
Sbjct: 60  GVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 6/120 (5%)

Query: 495 MLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQI 554
           +L L+   L   + +L  L  +  L L+ N L      +      L  +  S N      
Sbjct: 2   VLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALENVD 59

Query: 555 SSDWGKCPNLGTFDVSVNNIIG-SLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLI 613
                  P L    +  N +   +    +    +L +++L  N +         +L+ ++
Sbjct: 60  GVAN--LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEML 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (99), Expect = 3e-05
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 5/106 (4%)

Query: 472 LALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNIS 531
           L L    L+  +   L  L+ +T L LS N+L+   P L  L  L  L+ + N       
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA--LENV 58

Query: 532 ESFGIHPKLTFIDLSHNNF-YGQISSDWGKCPNLGTFDVSVNNIIG 576
           +     P+L  + L +N             CP L   ++  N++  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (99), Expect = 3e-05
 Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 14/130 (10%)

Query: 158 KFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKG 217
           + L+L+    +  +   +  L  +  L L  N+L    P     L++L  L +       
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNA 54

Query: 218 SI-PPSLGNLTNLAILYLHNNSL-SGSIPSEIGNLKSLSSLALGNNKLCG------SIPL 269
                 + NL  L  L L NN L   +    + +   L  L L  N LC        +  
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 270 FLGNLTNLDT 279
            L +++++ T
Sbjct: 115 MLPSVSSILT 124

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (98), Expect = 4e-05
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 6/108 (5%)

Query: 638 YLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKE 697
            L L+   L+  +   L  L+ + +L+LS N+     P  L  L  L  L  S N    E
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNA--LE 56

Query: 698 IPSQICNMRSLEMLNLSHNNLSDF-IPRCFEEMNGLLYIDISYNELHG 744
               + N+  L+ L L +N L      +       L+ +++  N L  
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 6e-05
 Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 12/127 (9%)

Query: 208 LALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSI 267
           L L    L  ++   L  L  +  L L +N L    P+ +  L+ L  L   +N L    
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD 59

Query: 268 PLFLGNLTNLDTLYLRNNSFSS-SIPSEIGNLKSLSILELGENRLNG------SIPLSLG 320
            +   NL  L  L L NN     +    + +   L +L L  N L         +   L 
Sbjct: 60  GVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 321 NLTNLDT 327
           +++++ T
Sbjct: 118 SVSSILT 124

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 6/108 (5%)

Query: 303 ILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSS 362
           +L L    L  ++   L  L  +  L L  N L    P+ +  L+ L  L+ +DN L + 
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENV 58

Query: 363 IPHYLGNLTNLAAFYLYKNSL-SGSIPSEIGNLKSLSNLDLSENKLSG 409
                          L  N L   +    + +   L  L+L  N L  
Sbjct: 59  DGVANLPRLQE--LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 7/119 (5%)

Query: 184 LHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSI 243
           LHL    L+  +   +  L  +  L L+ N L+  +PP+L  L  L +L   +N+     
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNA--LEN 57

Query: 244 PSEIGNLKSLSSLALGNNKL-CGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSL 301
              + NL  L  L L NN+L   +    L +   L  L L+ NS           L  +
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL-CQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 6e-04
 Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 566 TFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQ 625
              ++  ++  ++   +     +  +DLS N +    P+ +  L  L  L    N L   
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALEN- 57

Query: 626 LPSELGSLIQLEYLDLSSNRLSN-SIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHL 684
               + +L +L+ L L +NRL   +  + L +  +L  LNL  N   QE  I+      L
Sbjct: 58  -VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 685 SEL 687
             +
Sbjct: 117 PSV 119

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 36/199 (18%), Positives = 70/199 (35%), Gaps = 15/199 (7%)

Query: 465 NLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRN 524
            L       L    ++  + +   +L ++T L      ++ SI  +  L NL ++  + N
Sbjct: 16  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SIDGVEYLNNLTQINFSNN 72

Query: 525 HLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGD 584
            LT               ++ +       +++           +   +            
Sbjct: 73  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--------L 124

Query: 585 SSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSN 644
            +  ++  L  +       S +  L+SL +L    NQ+    P  L +L  LE LD+SSN
Sbjct: 125 KNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSN 182

Query: 645 RLSNSIPRSLGNLVKLHYL 663
           ++S+     L  L  L  L
Sbjct: 183 KVSD--ISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 4e-05
 Identities = 32/190 (16%), Positives = 54/190 (28%), Gaps = 20/190 (10%)

Query: 249 NLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGE 308
            L       LG   +  ++     +L  + TL        S     +  L +L+ +    
Sbjct: 16  ALAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 71

Query: 309 NRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLG 368
           N+L    PL          +     +    + +               +         L 
Sbjct: 72  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131

Query: 369 NLTNLAAF--------------YLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHS 414
            L   +                 L  +S   +    + NL +L  LD+S NK+S      
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD--ISV 189

Query: 415 LGNLTNLAIL 424
           L  LTNL  L
Sbjct: 190 LAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 35/191 (18%), Positives = 58/191 (30%), Gaps = 47/191 (24%)

Query: 369 NLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHS 428
            L       L K +++ ++     +L  ++ L      +  SI   +  L NL  +   +
Sbjct: 16  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSN 71

Query: 429 NTLLG----------------------------------------SIPREIGNLKSLFEL 448
           N L                                           I             
Sbjct: 72  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131

Query: 449 QLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP 508
           +L  +  + S   +L  LT +  L    N ++ + P  L NL  L  L +S N++   I 
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVS-DIS 188

Query: 509 NLRNLTNLIRL 519
            L  LTNL  L
Sbjct: 189 VLAKLTNLESL 199

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 48/334 (14%), Positives = 96/334 (28%), Gaps = 41/334 (12%)

Query: 395 KSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTL----LGSIPREIGNLKSLFELQL 450
           KSL    ++      S+   L    ++  + L  NT+       +   I + K L   + 
Sbjct: 8   KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 451 GDN---KLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSI 507
            D    ++ + I  +L  L    L     + +            +  +  LS +     +
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 508 PNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQIS-----SDWGKCP 562
               N             L          +       +   N     S       +    
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186

Query: 563 NLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHII---------GKIPSEIGKLSSLI 613
            L T  +  N I       +      +  +L    +            +   +    +L 
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 246

Query: 614 KLILRRNQLFGQLPSELG------SLIQLEYLDLSSNRLSNSIPRSL-----GNLVKLHY 662
           +L L    L  +  + +         I L+ L L  N +     R+L       +  L +
Sbjct: 247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306

Query: 663 LNLSTNQFIQEIPI--KLEKLI------HLSELD 688
           L L+ N+F +E  +  ++ ++        L ELD
Sbjct: 307 LELNGNRFSEEDDVVDEIREVFSTRGRGELDELD 340

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 48.0 bits (112), Expect = 3e-06
 Identities = 37/319 (11%), Positives = 82/319 (25%), Gaps = 19/319 (5%)

Query: 428 SNTLLGSIPREIGNLKSLFELQLGDNKLSN----SISHSLGNLTHMTLLALYDN---ALS 480
           +     S+   +    S+ E+ L  N +       +S ++ +   + +    D     + 
Sbjct: 16  TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVK 75

Query: 481 GVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKL 540
             IPE L  L++  +     + ++ S            +     H               
Sbjct: 76  DEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP 135

Query: 541 TFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIG 600
                          +   K        +   N + +   +    +      L    ++ 
Sbjct: 136 QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ 195

Query: 601 KIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKL 660
                 G    L++ +    +L                   SS              + L
Sbjct: 196 NGIRPEGIEHLLLEGLAYCQELKVLDLQ-----DNTFTHLGSSALAIALKSWPNLRELGL 250

Query: 661 HYLNLSTNQFIQEI-PIKLEKLIHLSELDLSHNFLGKEIPSQIC-----NMRSLEMLNLS 714
           +   LS       +      + I L  L L +N +  +    +       M  L  L L+
Sbjct: 251 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 310

Query: 715 HNNLSDFIPRCFEEMNGLL 733
            N  S+      +E+  + 
Sbjct: 311 GNRFSE-EDDVVDEIREVF 328

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 4/85 (4%)

Query: 663 LNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKE----IPSQICNMRSLEMLNLSHNNL 718
           L+  T +  + +   L +   + E+ LS N +G E    +   I + + LE+   S    
Sbjct: 12  LDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT 71

Query: 719 SDFIPRCFEEMNGLLYIDISYNELH 743
                   E +  LL   +   +LH
Sbjct: 72  GRVKDEIPEALRLLLQALLKCPKLH 96

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.8 bits (96), Expect = 3e-04
 Identities = 41/353 (11%), Positives = 86/353 (24%), Gaps = 37/353 (10%)

Query: 299 KSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSG----SIPSEIGNLKSLSGLEL 354
           KSL +  +       S+   L    ++  + L  N++       +   I + K L   E 
Sbjct: 8   KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 355 ADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHS 414
           +D                          +   IP  +  L          + +  S    
Sbjct: 67  SDIFT---------------------GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 105

Query: 415 LGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLAL 474
                   I +L  +T L  +      L      ++       +++    N   +  +  
Sbjct: 106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 165

Query: 475 YDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESF 534
             N L     +E     +   L  +   +Q  I        L+        L     +  
Sbjct: 166 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN 225

Query: 535 GIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLS 594
                 +         +  +         L     +             ++  L  + L 
Sbjct: 226 TFTHLGSSALAIALKSWPNLRELGLNDCLLS----ARGAAAVVDAFSKLENIGLQTLRLQ 281

Query: 595 ANHIIGKIPSEI-----GKLSSLIKLILRRNQL--FGQLPSELGSLIQLEYLD 640
            N I       +      K+  L+ L L  N+      +  E+  +       
Sbjct: 282 YNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRG 334

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.2 bits (92), Expect = 8e-04
 Identities = 46/335 (13%), Positives = 97/335 (28%), Gaps = 30/335 (8%)

Query: 204 SLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSG----SIPSEIGNLKSLSSLALG 259
           SL   A+T+   K S+   L    ++  + L  N++       +   I + K L      
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 260 NN---KLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIP 316
           +    ++   IP  L  L        + ++   S  +     +   I  L ++     + 
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 317 LSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAF 376
           L    L       +       ++  +  N   L  +    N L  +        T  +  
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL-ENGSMKEWAKTFQSHR 186

Query: 377 YLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIP 436
            L+   +  +     G    L        +L                    ++    ++ 
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD----------NTFTHLGSSALA 236

Query: 437 REIGNLKSLFELQLGDNKLSNSISHSLGN------LTHMTLLALYDNALSGVIPEEL--- 487
             + +  +L EL L D  LS   + ++ +         +  L L  N +       L   
Sbjct: 237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV 296

Query: 488 --GNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLR 520
               +  L  L L+ N+       +  +  +   R
Sbjct: 297 IDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTR 331

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.2 bits (92), Expect = 9e-04
 Identities = 42/327 (12%), Positives = 86/327 (26%), Gaps = 55/327 (16%)

Query: 492 KLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCN----ISESFGIHPKLTFIDLSH 547
            L +  ++    +     L    ++  + L+ N +       +SE+      L   + S 
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 548 N----------NFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANH 597
                           +     KCP L T  +S N    +    + D    H        
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 598 IIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNL 657
               +  + G   +     L  N+     P     +     L+  S +      +S   L
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188

Query: 658 VKLHYLNLSTNQ------------------------------FIQEIPIKLEKLIHLSEL 687
             +  +                                        + I L+   +L EL
Sbjct: 189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 248

Query: 688 DLSHNFLGKEIPSQICNM------RSLEMLNLSHNNLSDFIPRCFEE-----MNGLLYID 736
            L+   L     + + +         L+ L L +N +     R  +      M  LL+++
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308

Query: 737 ISYNELHGPIPNSTAFSDALMEALQGN 763
           ++ N             +      +G 
Sbjct: 309 LNGNRFSEEDDVVDEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 7/89 (7%)

Query: 73  WFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQI----- 127
                      +N   L+  G    +  FS      L  L LQ N+I       +     
Sbjct: 239 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 298

Query: 128 GNISKLKYLDLSSNSFS--GTIPPQIGNL 154
             +  L +L+L+ N FS    +  +I  +
Sbjct: 299 EKMPDLLFLELNGNRFSEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 45/323 (13%), Positives = 89/323 (27%), Gaps = 33/323 (10%)

Query: 157 LKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGP----IPHEVGGLSSLNELALTS 212
           LK   ++       +   +     ++ + L  N +       +   +     L     + 
Sbjct: 10  LKLDAITTEDEKS-VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 213 NF---LKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPL 269
            F   +K  IP +L  L    +     +++  S  +     +      L  +     + L
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 270 FLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLY 329
               L       +       ++  +  N   L  +  G NRL                L 
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188

Query: 330 LYTNSLSGSIPSEIGNLKSLSGLE-------------LADNELSSSIPHYLGNLTNLAAF 376
                +   I  E      L GL                 +  SS++   L +  NL   
Sbjct: 189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 248

Query: 377 YLYKNSLSGSIPSEIGN------LKSLSNLDLSENKLSGSIPHSL-----GNLTNLAILY 425
            L    LS    + + +         L  L L  N++      +L       + +L  L 
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308

Query: 426 LHSNTLLGSIPREIGNLKSLFEL 448
           L+ N         +  ++ +F  
Sbjct: 309 LNGN-RFSEEDDVVDEIREVFST 330

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 46/312 (14%), Positives = 91/312 (29%), Gaps = 17/312 (5%)

Query: 251 KSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFS----SSIPSEIGNLKSLSILEL 306
           KSL   A+       S+   L    ++  + L  N+        +   I + K L I E 
Sbjct: 8   KSLKLDAITTEDE-KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 307 GEN---RLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSI 363
            +    R+   IP +L  L          +++  S  +     +      L+ +     +
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 364 PHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAI 423
             +   L   A   + +     ++  +  N   L ++    N+L                
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186

Query: 424 LYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVI 483
           L      +   I  E      L  L          +  +       + LA+   +   + 
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 246

Query: 484 PEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISES-----FGIHP 538
              L +     +L+           +      L  LRL  N +  +   +         P
Sbjct: 247 ELGLND----CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 302

Query: 539 KLTFIDLSHNNF 550
            L F++L+ N F
Sbjct: 303 DLLFLELNGNRF 314

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 3e-06
 Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 5/138 (3%)

Query: 625 QLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHL 684
           QL   +          L    L +     L        LN   +     + I  E +  L
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGLRS--DPDLVAQNIDVVLNRR-SSMAATLRIIEENIPEL 67

Query: 685 SELDLSHNFLGK--EIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 742
             L+LS+N L +  ++ S +    +L++LNLS N L         +   L  + +  N L
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

Query: 743 HGPIPNSTAFSDALMEAL 760
                + + +  A+ E  
Sbjct: 128 SDTFRDQSTYISAIRERF 145

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 22/137 (16%), Positives = 47/137 (34%), Gaps = 5/137 (3%)

Query: 314 SIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNL 373
            + L +    +     L    L      ++        L    + +++++     N+  L
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLNRRSS-MAATLRIIEENIPEL 67

Query: 374 AAFYLYKNSLSG--SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTL 431
            +  L  N L     + S +    +L  L+LS N+L             L  L+L  N+L
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

Query: 432 LGSIPREIGNLKSLFEL 448
             +   +   + ++ E 
Sbjct: 128 SDTFRDQSTYISAIRER 144

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.004
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 3/106 (2%)

Query: 198 EVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSG--SIPSEIGNLKSLSS 255
           ++   +    L   S+    ++     N+  L  L L NN L     + S +    +L  
Sbjct: 37  DLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKI 95

Query: 256 LALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSL 301
           L L  N+L     L       L+ L+L  NS S +   +   + ++
Sbjct: 96  LNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI 141

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 7e-06
 Identities = 26/213 (12%), Positives = 52/213 (24%), Gaps = 5/213 (2%)

Query: 467 THMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHL 526
            +   L      L  +          L  + +S N +   I             +     
Sbjct: 29  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88

Query: 527 TCNISESFGIHPKLTFIDLSHNNFYG-----QISSDWGKCPNLGTFDVSVNNIIGSLPPE 581
              +  +      L  +     +  G      +         L     ++N         
Sbjct: 89  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 148

Query: 582 IGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDL 641
           +G S +  ++ L+ N I                 +   N L                LD+
Sbjct: 149 VGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 208

Query: 642 SSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEI 674
           S  R+ +     L NL KL   +    + +  +
Sbjct: 209 SRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL 241

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 6e-05
 Identities = 36/233 (15%), Positives = 68/233 (29%), Gaps = 10/233 (4%)

Query: 494 TMLTLSDNQLQGSIPNLRNL-TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYG 552
            +    ++++   IP   +L  N I LR     L      +F     L  I++S N+   
Sbjct: 11  RVFLCQESKVT-EIP--SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 553 QISSDWGKCPNLGTFDVSV--NNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLS 610
            I +D                NN++   P    +   L  + +S   I            
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127

Query: 611 SLIKLILRR--NQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTN 668
             + L ++   N    +  S +G   +   L L+ N +      +              N
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN 187

Query: 669 QFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDF 721
              +              LD+S   +       + N++ L   +    NL   
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKL 238

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 8e-05
 Identities = 28/222 (12%), Positives = 54/222 (24%), Gaps = 6/222 (2%)

Query: 218 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNL 277
            IP  L    N   L      L             L  + +  N +   I   + +    
Sbjct: 22  EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79

Query: 278 DTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSG 337
                   + +    +        ++  L  +         +  + +L  + L       
Sbjct: 80  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139

Query: 338 SIPSEIGNLKSLSG----LELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGN 393
               E  +   LS     L L  N +                     N+L          
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199

Query: 394 LKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSI 435
                 LD+S  ++     + L NL  L     ++   L ++
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL 241

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 27/223 (12%), Positives = 69/223 (30%), Gaps = 7/223 (3%)

Query: 428 SNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEEL 487
             + +  IP ++   ++  EL+    KL      +      +  + +  N +  VI  ++
Sbjct: 16  QESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 73

Query: 488 GNLVKLTMLTLS---DNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFID 544
            + +           +N L  +    +NL NL  L ++   +            +   +D
Sbjct: 74  FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD 133

Query: 545 LSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGD--SSQLHVIDLSANHIIGKI 602
           +  N     I  +     +  +  + +N              +    +     N++    
Sbjct: 134 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELP 193

Query: 603 PSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNR 645
                  S  + L + R ++       L +L +L      + +
Sbjct: 194 NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 7e-04
 Identities = 25/240 (10%), Positives = 53/240 (22%), Gaps = 19/240 (7%)

Query: 71  CAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNI 130
           C+     C                   + +       +   L   + ++  I        
Sbjct: 8   CSNRVFLCQESK---------------VTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGF 52

Query: 131 SKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQ 190
             L+ +++S N     I   + +              +          +     +L  + 
Sbjct: 53  GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 112

Query: 191 LS----GPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSE 246
                   +         L ++    N         +G      IL+L+ N +       
Sbjct: 113 TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCA 172

Query: 247 IGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILEL 306
               +        NN L           +    L +      S     + NLK L     
Sbjct: 173 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 8e-04
 Identities = 29/223 (13%), Positives = 53/223 (23%), Gaps = 9/223 (4%)

Query: 123 IPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIE 182
           IP  +        L                    L+ + +S N     I   +       
Sbjct: 23  IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 80

Query: 183 ALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGS 242
                +   +    +     +  N   L  +       P +  + +L  + L        
Sbjct: 81  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI 140

Query: 243 IPSEIGNLKSLSS----LALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNL 298
              E  +   LS     L L  N +              +     NN+            
Sbjct: 141 HTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA 200

Query: 299 KSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPS 341
               IL++   R++      L NL  L     Y       +P+
Sbjct: 201 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 9e-04
 Identities = 11/80 (13%), Positives = 27/80 (33%), Gaps = 3/80 (3%)

Query: 70  PCAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGN 129
                     +  +++ +NL++      L +  F        LD+   +I  +    + N
Sbjct: 164 GIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 223

Query: 130 ISKLKYLDLSSNSFSGTIPP 149
           + KL+     +      +P 
Sbjct: 224 LKKLRARSTYNLK---KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 28/239 (11%), Positives = 73/239 (30%), Gaps = 10/239 (4%)

Query: 276 NLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSL 335
           +      + +  +  IPS++   ++   L     +L      +     +L+ + +  N +
Sbjct: 9   SNRVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 336 SGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLS----GSIPSEI 391
              I +++ +          +   +    +           YL  ++        +    
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 392 GNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLG 451
              K L ++  + N  +      +G      IL+L+ N +           +        
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 452 DNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNL 510
           +N L    +      +   +L +    +  +    L NL KL   +  + +    +P L
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPTL 241

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 27/136 (19%), Positives = 43/136 (31%), Gaps = 7/136 (5%)

Query: 125 PQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEAL 184
            Q  N  + + LDL        I      L     +  S N+   R       L  ++ L
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTL 68

Query: 185 HLFKNQLSGPIPHEVGGLSSLNELALTSNFLKG-SIPPSLGNLTNLAILYLHN---NSLS 240
            +  N++          L  L EL LT+N L        L +L +L  L +      +  
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 241 GSIPSEIGNLKSLSSL 256
                 I  +  +  L
Sbjct: 129 HYRLYVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 12/82 (14%), Positives = 29/82 (35%), Gaps = 4/82 (4%)

Query: 667 TNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCF 726
           T + I++   +    +   ELDL    +   I +    +   + ++ S N +       F
Sbjct: 4   TAELIEQAA-QYTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIRKL--DGF 59

Query: 727 EEMNGLLYIDISYNELHGPIPN 748
             +  L  + ++ N +      
Sbjct: 60  PLLRRLKTLLVNNNRICRIGEG 81

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 3e-04
 Identities = 27/143 (18%), Positives = 47/143 (32%), Gaps = 8/143 (5%)

Query: 358 ELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGN 417
           EL      Y  N        L    +   I +    L     +D S+N++          
Sbjct: 6   ELIEQAAQYT-NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--L 61

Query: 418 LTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSN----SISHSLGNLTHMTLLA 473
           L  L  L +++N +          L  L EL L +N L          SL +LT++ +L 
Sbjct: 62  LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 121

Query: 474 LYDNALSGVIPEELGNLVKLTML 496
                        +  + ++ +L
Sbjct: 122 NPVTNKKHYRLYVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 6e-04
 Identities = 26/148 (17%), Positives = 59/148 (39%), Gaps = 9/148 (6%)

Query: 593 LSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPR 652
           L+A  +I +            +L LR  ++   + +   +L Q + +D S N +      
Sbjct: 3   LTAE-LIEQAAQYTN-AVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIRKLDGF 59

Query: 653 SLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGK----EIPSQICNMRSL 708
               L +L  L ++ N+  +      + L  L+EL L++N L +    +  + + ++  L
Sbjct: 60  P--LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 117

Query: 709 EMLNLSHNNLSDFIPRCFEEMNGLLYID 736
            +L     N   +      ++  +  +D
Sbjct: 118 CILRNPVTNKKHYRLYVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 7e-04
 Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 4/102 (3%)

Query: 450 LGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPN 509
           L    +  +  ++  N      L L    +  VI      L +   +  SDN+++  +  
Sbjct: 3   LTAELIEQAAQYT--NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDG 58

Query: 510 LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFY 551
              L  L  L +N N +           P LT + L++N+  
Sbjct: 59  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 100

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.003
 Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 7/135 (5%)

Query: 102 SFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLY 161
            +++      LDL+  +I  +I      + +   +D S N            L  LK L 
Sbjct: 13  QYTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLL 69

Query: 162 LSANQFSGRIPPQIGHLSYIEALHLFKNQLSG-PIPHEVGGLSSLNELAL---TSNFLKG 217
           ++ N+           L  +  L L  N L        +  L SL  L +        K 
Sbjct: 70  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 129

Query: 218 SIPPSLGNLTNLAIL 232
                +  +  + +L
Sbjct: 130 YRLYVIYKVPQVRVL 144

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 39.7 bits (91), Expect = 7e-04
 Identities = 23/164 (14%), Positives = 59/164 (35%), Gaps = 10/164 (6%)

Query: 604 SEIGKLSSLIKLILRRNQLFGQLP------SELGSLIQLEYLDLSSNRLSNSIPRSLGNL 657
               +  S++     + +L G +P      + L +L   ++L LS+N +   I  SL  +
Sbjct: 12  RIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGM 69

Query: 658 VKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNN 717
             L  L+    + + +    L+ +    E           +      +    +   ++  
Sbjct: 70  ENLRILS--LGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKI 127

Query: 718 LSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQ 761
            +         ++ L  + ++ N L+     + A S+  +E ++
Sbjct: 128 TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	893
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	100.0
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	100.0
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.98
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.95
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.95
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.95
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.95
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.92
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.92
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.92
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.92
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.91
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.91
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.88
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.88
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.86
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.85
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.83
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.8
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.74
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.71
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.7
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.7
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.64
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.61
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	99.2
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	99.12
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.86
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.43
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.24

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=0  Score=290.33  Aligned_cols=291  Identities=32%  Similarity=0.563  Sum_probs=166.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--CCCCEEECCC---CCEEEEECCCCCCCCC--CCCCCCC
Q ss_conf             6988889999999860799999999999988999999998--4471452899---9899998699998443--4876578
Q 002679           32 SDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPC--AWFGIHCNHV---GRVNSINLTNVGLKGT--LHDFSFS  104 (893)
Q Consensus        32 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~W~~~~~~~~~~c--~w~gv~c~~~---~~v~~l~l~~~~~~~~--~~~~~~~  104 (893)
                      .|.++|++||++||+++.+ |  ..+++|.    .++|||  .|.||+|+..   +||+.|+++++++.|.  +| ..+.
T Consensus         2 ~c~~~e~~aLl~~k~~~~~-~--~~l~sW~----~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp-~~l~   73 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGN-P--TTLSSWL----PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP-SSLA   73 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTC-C--GGGTTCC----TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECC-GGGG
T ss_pred             CCCHHHHHHHHHHHHHCCC-C--CCCCCCC----CCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCC-HHHH
T ss_conf             9898999999999997799-9--8677889----99999889488969748999479889989899888888798-4784


Q ss_pred             CCCCCCEEECCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             999997998789-9777569724459999989858898799889822459999991017885579999787898999879
Q 002679          105 SFPHLAYLDLQV-NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEA  183 (893)
Q Consensus       105 ~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~  183 (893)
                      ++++|++|+|++ |.+.+.+|..|+++++|++|++++|.+.+..+..+..+.+|++++++.|.+.+.+|..+++++.++.
T Consensus        74 ~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~  153 (313)
T d1ogqa_          74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG  153 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHCCCCCCCE
T ss_conf             67533520202654333002431145420011020356434433222220111001111224555568512206740000


Q ss_pred             EECCCCCCCCCCCCCCCCCCCC-CEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf             9698865789898445799999-899845887999899898899998889910786888899244699999799845887
Q 002679          184 LHLFKNQLSGPIPHEVGGLSSL-NELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNK  262 (893)
Q Consensus       184 L~l~~~~~~~~~~~~~~~l~~L-~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  262 (893)
                      +++++|.+.+.+|..+..+..+ +.++++.|.+++..+..+..+..                         ..+++..+.
T Consensus       154 l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-------------------------~~l~l~~~~  208 (313)
T d1ogqa_         154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-------------------------AFVDLSRNM  208 (313)
T ss_dssp             EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-------------------------SEEECCSSE
T ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------------------------CCCCCCCCC
T ss_conf             0023553356203121443112323102246435332433222222-------------------------233333343


Q ss_pred             CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf             99989876789998879994267778878745558888875206987477877888888999987983378875666898
Q 002679          263 LCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSE  342 (893)
Q Consensus       263 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  342 (893)
                      ..+.+|..+..++.++.++++++.+.+..+ .+..+++|+.|++++|++++.+|..++++++|++|++++|.++|.+|. 
T Consensus       209 ~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-  286 (313)
T d1ogqa_         209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-  286 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCC-
T ss_conf             322222222222221112222222222222-222455444444765706660876884799999897958835166898-


Q ss_pred             CCCCCCCCEEECCCC
Q ss_conf             889999986974478
Q 002679          343 IGNLKSLSGLELADN  357 (893)
Q Consensus       343 l~~l~~L~~L~l~~n  357 (893)
                      +..+++|+.+++++|
T Consensus       287 ~~~L~~L~~l~l~~N  301 (313)
T d1ogqa_         287 GGNLQRFDVSAYANN  301 (313)
T ss_dssp             STTGGGSCGGGTCSS
T ss_pred             CCCCCCCCHHHHCCC
T ss_conf             666799897886889

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=100.00  E-value=6.4e-40  Score=209.28  Aligned_cols=59  Identities=24%  Similarity=0.400  Sum_probs=19.9

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf             248887984416468587565066540367651124433378740000258744661218888
Q 002679          654 LGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHN  716 (893)
Q Consensus       654 l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  716 (893)
                      +..+++|+.|++++|+++.. + .+..+++|+.|++++|++++..|  +.++++|+.|+|++|
T Consensus       325 l~~l~~L~~L~L~~n~l~~l-~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         325 VSSLTKLQRLFFANNKVSDV-S-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCCCCEEECCCCCCCCC-H-HHCCCCCCCEEECCCCCCCCCHH--HCCCCCCCEEECCCC
T ss_conf             36689889898989989997-4-67089999989897995899800--003999999639789

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=2.8e-42  Score=220.92  Aligned_cols=242  Identities=25%  Similarity=0.453  Sum_probs=155.9

Q ss_pred             CCCCCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf             3224899986994458-705455885768899964898657866799997868999864998568820112884104765
Q 002679          532 ESFGIHPKLTFIDLSH-NNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLS  610 (893)
Q Consensus       532 ~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~  610 (893)
                      ..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|++.+..+..+..+..|+.++++.|.+.+.+|..+..++
T Consensus        70 ~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~  149 (313)
T d1ogqa_          70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP  149 (313)
T ss_dssp             GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHCCCC
T ss_conf             47846753352020265433300243114542001102035643443322222011100111122455556851220674


Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCC-CEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCC
Q ss_conf             33268702664567786012588666-54107777456553221248887984416468587565066540367651124
Q 002679          611 SLIKLILRRNQLFGQLPSELGSLIQL-EYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDL  689 (893)
Q Consensus       611 ~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  689 (893)
                      .++.+++++|.+.+.+|..+..+..+ +.+++++|.+.+..+..+..+..+ .++++++...+.+|..+..+++++.+++
T Consensus       150 ~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~  228 (313)
T d1ogqa_         150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHL  228 (313)
T ss_dssp             TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEEC
T ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             000000235533562031214431123231022464353324332222222-3333334332222222222222111222


Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCC
Q ss_conf             43337874000025874466121888868987721111299997897327823003899921353204331379899889
Q 002679          690 SHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGD  769 (893)
Q Consensus       690 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~l~ls~N~l~~~~~~~~~~~~~~~~~~~gn~~lc~~  769 (893)
                      ++|.+.+.++ .+..+++|+.|++++|++++.+|..+..++.|+.+++++|.++|.+|..+.+.......+.||+.+||.
T Consensus       229 ~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         229 AKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             CSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEEST
T ss_pred             CCCCCCCCCC-CCCCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC
T ss_conf             2222222222-222455444444765706660876884799999897958835166898666799897886889500198


Q ss_pred             CCCCCCCC
Q ss_conf             98988989
Q 002679          770 IKGFQSCK  777 (893)
Q Consensus       770 ~~~~~~C~  777 (893)
                      |  .+.|+
T Consensus       308 p--lp~c~  313 (313)
T d1ogqa_         308 P--LPACT  313 (313)
T ss_dssp             T--SSCCC
T ss_pred             C--CCCCC
T ss_conf             9--88989

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=100.00  E-value=1.3e-38  Score=202.90  Aligned_cols=101  Identities=25%  Similarity=0.444  Sum_probs=49.2

Q ss_pred             CCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             88666541077774565532212488879844164685875650665403676511244333787400002587446612
Q 002679          632 SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEML  711 (893)
Q Consensus       632 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  711 (893)
                      .++.++.+.++.|.+.+.  ..+..+++++.|++++|++.+..+  +..+++|+.|++++|++++. + .+..+++|++|
T Consensus       283 ~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l-~-~l~~l~~L~~L  356 (384)
T d2omza2         283 GLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV-S-SLANLTNINWL  356 (384)
T ss_dssp             TCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-G-GGGGCTTCCEE
T ss_pred             CCCCCCCCCCCCCCCCCC--CCCCHHCCCCEEECCCCCCCCCCC--CCCCCCCCEEECCCCCCCCC-H-HHCCCCCCCEE
T ss_conf             565222233232333332--210000246767777887789845--36689889898989989997-4-67089999989


Q ss_pred             ECCCCCCCCCCCHHHHCCCCCCEEECCCC
Q ss_conf             18888689877211112999978973278
Q 002679          712 NLSHNNLSDFIPRCFEEMNGLLYIDISYN  740 (893)
Q Consensus       712 ~Ls~N~l~~~~~~~l~~l~~L~~l~ls~N  740 (893)
                      ++++|++++..|  +..+++|+.+++++|
T Consensus       357 ~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         357 SAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             ECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             ECCCCCCCCCHH--HCCCCCCCEEECCCC
T ss_conf             897995899800--003999999639789

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.9e-35  Score=187.27  Aligned_cols=249  Identities=26%  Similarity=0.347  Sum_probs=129.9

Q ss_pred             CCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             99999844714528999899998699998443487657899999799878997775697244599999898588987998
Q 002679           66 TKISPCAWFGIHCNHVGRVNSINLTNVGLKGTLHDFSFSSFPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSG  145 (893)
Q Consensus        66 ~~~~~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~  145 (893)
                      ++..-|.|.++.|+..+           +. .+| ..+  .+.+++|+|++|.++...+.+|.++++|++|++++|.+..
T Consensus         5 p~~c~c~~~~~~C~~~~-----------L~-~lP-~~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~   69 (305)
T d1xkua_           5 PFRCQCHLRVVQCSDLG-----------LE-KVP-KDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK   69 (305)
T ss_dssp             CTTCEEETTEEECTTSC-----------CC-SCC-CSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCCEECCCEEEECCCC-----------CC-CCC-CCC--CCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             99889559999855999-----------88-519-888--9997989784991898696576046565231123443445


Q ss_pred             CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC--CCCCCCC
Q ss_conf             89822459999991017885579999787898999879969886578989844579999989984588799--9899898
Q 002679          146 TIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLK--GSIPPSL  223 (893)
Q Consensus       146 ~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~l  223 (893)
                      ..|..|.++++|++|++++|.+. .+|..+  ...++.|++..+.+....+..+.....+..+....+...  ...+..+
T Consensus        70 i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~  146 (305)
T d1xkua_          70 ISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF  146 (305)
T ss_dssp             BCTTTTTTCTTCCEEECCSSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG
T ss_pred             CCHHHHHCCCCCCEECCCCCCCC-CCCCCH--HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             23566527985578315687567-676400--111323210246102344445401331100001233333467776422


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCE
Q ss_conf             89999888991078688889924469999979984588799989876789998879994267778878745558888875
Q 002679          224 GNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSI  303 (893)
Q Consensus       224 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  303 (893)
                      ..+++|                        +.+++++|.+. .++..  .+++|+.|++++|......+..+..++.++.
T Consensus       147 ~~l~~L------------------------~~l~l~~n~l~-~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~  199 (305)
T d1xkua_         147 QGMKKL------------------------SYIRIADTNIT-TIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAK  199 (305)
T ss_dssp             GGCTTC------------------------CEEECCSSCCC-SCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCE
T ss_pred             CCCCCC------------------------CCCCCCCCCCC-CCCCC--CCCCCCEEECCCCCCCCCCHHHHHCCCCCCC
T ss_conf             345656------------------------71203467745-16710--1776678989788677888267641341330


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf             206987477877888888999987983378875666898889999986974478678
Q 002679          304 LELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELS  360 (893)
Q Consensus       304 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~  360 (893)
                      |++++|.+.+..+..+.++++|++|++++|.++ .+|..+..+++|+.|++++|+++
T Consensus       200 L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         200 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             EECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC-CCCCCCCCCCCCCEEECCCCCCC
T ss_conf             154455332223454334433224302554002-46311033467898989898657

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-37  Score=194.48  Aligned_cols=211  Identities=22%  Similarity=0.205  Sum_probs=144.5

Q ss_pred             CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC-CCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf             8699445870545588576889996489865786679999786899986499856-882011288410476533268702
Q 002679          540 LTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLS-ANHIIGKIPSEIGKLSSLIKLILR  618 (893)
Q Consensus       540 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~-~n~l~~~~~~~l~~l~~L~~L~Ls  618 (893)
                      +++|++++|.++...+..|..+++|+++++++|.+....+..+...+.++.+... .+.+....+..+.++++|+.|+++
T Consensus        34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~  113 (284)
T d1ozna_          34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD  113 (284)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECC
T ss_conf             88897748817987977864142130000134454332111212222222222221022354462010101027787568


Q ss_pred             CCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             66456778601258866654107777456553221248887984416468587565066540367651124433378740
Q 002679          619 RNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEI  698 (893)
Q Consensus       619 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~  698 (893)
                      +|.+....+..+....+|+.+++++|.++++.+..|..+++|+.|++++|++.+..+..+..+++|+.+++++|.+++..
T Consensus       114 ~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~  193 (284)
T d1ozna_         114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH  193 (284)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCCCCCCCCCCCCHHCCCCHHHHCCCCCCCCCHHHHCCCCCHHHCCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCC
T ss_conf             85443201353320001211020014314458057404340502231417656625666546563413142114346628


Q ss_pred             CCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf             0002587446612188886898772111129999789732782300389992
Q 002679          699 PSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNST  750 (893)
Q Consensus       699 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~l~ls~N~l~~~~~~~~  750 (893)
                      |..|..+++|++|++++|++.+..+..|..+.+|+++++++|++.|+|+..+
T Consensus       194 ~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~  245 (284)
T d1ozna_         194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP  245 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHH
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHH
T ss_conf             1676653200023333352210000023554656889811998878756469

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.5e-34  Score=182.81  Aligned_cols=109  Identities=25%  Similarity=0.286  Sum_probs=45.3

Q ss_pred             CCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             66654107777456553221248887984416468587565066540367651124433378740000258744661218
Q 002679          634 IQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNL  713 (893)
Q Consensus       634 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  713 (893)
                      ++|+.|++++|......+..+..++.++.|++++|.+.+..+..+..+++|++|+|++|.++ .+|..+..+++|++|++
T Consensus       171 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~L  249 (305)
T d1xkua_         171 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL  249 (305)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEEC
T ss_pred             CCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC-CCCCCCCCCCCCCEEEC
T ss_conf             76678989788677888267641341330154455332223454334433224302554002-46311033467898989


Q ss_pred             CCCCCCCCCCHHH------HCCCCCCEEECCCCCCC
Q ss_conf             8886898772111------12999978973278230
Q 002679          714 SHNNLSDFIPRCF------EEMNGLLYIDISYNELH  743 (893)
Q Consensus       714 s~N~l~~~~~~~l------~~l~~L~~l~ls~N~l~  743 (893)
                      ++|+++.+....|      .....|+.+++++||+.
T Consensus       250 s~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         250 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CCCCCCCCCHHHCCCCCHHCCCCCCCEEECCCCCCC
T ss_conf             898657638100267210021588897889899576

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-34  Score=181.99  Aligned_cols=204  Identities=27%  Similarity=0.311  Sum_probs=92.6

Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCC-CCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             999799878997775697244599999898588987998898224599999910178-8557999978789899987996
Q 002679          107 PHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLS-ANQFSGRIPPQIGHLSYIEALH  185 (893)
Q Consensus       107 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~-~n~~~~~~p~~l~~l~~L~~L~  185 (893)
                      +.+++|+|++|.++.+.+.+|.++++|++|+++++.+....+..+.++..++.+... .+.+....+..+.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEE
T ss_conf             99888977488179879778641421300001344543321112122222222222210223544620101010277875


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             98865789898445799999899845887999899898899998889910786888899244699999799845887999
Q 002679          186 LFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCG  265 (893)
Q Consensus       186 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~  265 (893)
                      +++|.+....+..+..+.+|+.+++++|.++...+..|..+++|+.|++++|.+....+..+.++++|+.+++++|.+.+
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCCCCCCCCCCCCCHHCCCCHHHHCCCCCCCCCHHHHCCCCCHHHCCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCCCC
T ss_conf             68854432013533200012110200143144580574043405022314176566256665465634131421143466


Q ss_pred             CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf             898767899988799942677788787455588888752069874
Q 002679          266 SIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENR  310 (893)
Q Consensus       266 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  310 (893)
                      ..|..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.
T Consensus       192 i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
T ss_conf             281676653200023333352210000023554656889811998

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-33  Score=175.31  Aligned_cols=146  Identities=29%  Similarity=0.231  Sum_probs=108.9

Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCC
Q ss_conf             47653326870266456778601258866654107777456553221248887984416468587565066540367651
Q 002679          607 GKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSE  686 (893)
Q Consensus       607 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  686 (893)
                      ..+++|+.|++++|++.. .+..+..+++|+.|++++|.+....+..+..+.+++.|++++|.+....+..+..++.|+.
T Consensus        74 ~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~  152 (266)
T d1p9ag_          74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK  152 (266)
T ss_dssp             SCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHH
T ss_conf             112232111112222211-1112122222222222223110110011222211112212434210221233322111000


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             124433378740000258744661218888689877211112999978973278230038999213532
Q 002679          687 LDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDA  755 (893)
Q Consensus       687 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~l~ls~N~l~~~~~~~~~~~~~  755 (893)
                      +++++|++++..+..|..+++|++|+|++|+++ .+|..+..+..|+.+++++|||.|+|...+ |..|
T Consensus       153 l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~~~~-l~~w  219 (266)
T d1p9ag_         153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEILY-FRRW  219 (266)
T ss_dssp             EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGGHH-HHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEEECCCCCCCCCCHHH-HHHH
T ss_conf             000015652237200134212423430139785-568667778889999836999878864379-9999

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=3.8e-30  Score=161.15  Aligned_cols=103  Identities=25%  Similarity=0.310  Sum_probs=38.8

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             99799878997775697244599999898588987998898224599999910178855799997878989998799698
Q 002679          108 HLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLF  187 (893)
Q Consensus       108 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~  187 (893)
                      ++++|+|++|.+.+..+.+|.++++|++|+|++|.++ .++ .++.+++|++|++++|.+. ..+..+.++++|+.|+++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECC
T ss_pred             CCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC-CCC-CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCC
T ss_conf             8898988499289859778634565522135665444-431-1111223211111222221-111121222222222222


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf             86578989844579999989984588
Q 002679          188 KNQLSGPIPHEVGGLSSLNELALTSN  213 (893)
Q Consensus       188 ~~~~~~~~~~~~~~l~~L~~L~l~~n  213 (893)
                      ++.+....+..+..+.++++|++++|
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~~n  134 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLKGN  134 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCC
T ss_conf             23110110011222211112212434

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.4e-31  Score=165.32  Aligned_cols=60  Identities=20%  Similarity=0.030  Sum_probs=21.8

Q ss_pred             CCCCCCCCCCCCCC----CCCCCCCCCCCCEEECCCCCCCCCCCHHH----H-CCCCCCEEECCCCCCC
Q ss_conf             65112443337874----00002587446612188886898772111----1-2999978973278230
Q 002679          684 LSELDLSHNFLGKE----IPSQICNMRSLEMLNLSHNNLSDFIPRCF----E-EMNGLLYIDISYNELH  743 (893)
Q Consensus       684 L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l----~-~l~~L~~l~ls~N~l~  743 (893)
                      |+.|+|++|.++..    +++.+..+++|++|||++|+++......+    . +...|+.+++.+|.+.
T Consensus       371 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             CCEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCC
T ss_conf             788989799797599999999996299889898999969879999999999747886678989898789

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.95  E-value=6.6e-23  Score=125.53  Aligned_cols=53  Identities=25%  Similarity=0.286  Sum_probs=22.3

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf             9979987899777569724459999989858898799889822459999991017885579
Q 002679          108 HLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFS  168 (893)
Q Consensus       108 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~  168 (893)
                      ++++|||+++.++. +|+.   .++|++|++++|.++ .+|..+   .+|+.|++++|.+.
T Consensus        39 ~l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~   91 (353)
T d1jl5a_          39 QAHELELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK   91 (353)
T ss_dssp             TCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS
T ss_pred             CCCEEEECCCCCCC-CCCC---CCCCCEEECCCCCCC-CCCCCH---HHHHHHHHHHCCCC
T ss_conf             99899937999887-8898---789888989999796-336203---32033266551432

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.95  E-value=3.3e-24  Score=131.93  Aligned_cols=12  Identities=25%  Similarity=0.301  Sum_probs=4.5

Q ss_pred             CCEEECCCCCCC
Q ss_conf             989858898799
Q 002679          133 LKYLDLSSNSFS  144 (893)
Q Consensus       133 L~~L~Ls~n~~~  144 (893)
                      +++|||+++.++
T Consensus        40 l~~LdLs~~~L~   51 (353)
T d1jl5a_          40 AHELELNNLGLS   51 (353)
T ss_dssp             CSEEECTTSCCS
T ss_pred             CCEEEECCCCCC
T ss_conf             989993799988

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.4e-31  Score=168.21  Aligned_cols=95  Identities=28%  Similarity=0.208  Sum_probs=48.7

Q ss_pred             CCCCCCEECCCCCCCCCC----CCCCCC-CCCCCCEEECCCCCCCCC----CCHHHHHCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf             886665410777745655----322124-888798441646858756----5066540367651124433378740000-
Q 002679          632 SLIQLEYLDLSSNRLSNS----IPRSLG-NLVKLHYLNLSTNQFIQE----IPIKLEKLIHLSELDLSHNFLGKEIPSQ-  701 (893)
Q Consensus       632 ~l~~L~~L~Ls~n~l~~~----~~~~l~-~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~~~~~-  701 (893)
                      ..++|++|+|++|.+.+.    ++..+. ..+.|+.|+|++|.++..    +...+...++|++|+|++|.++...... 
T Consensus       338 ~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l  417 (460)
T d1z7xw1         338 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL  417 (460)
T ss_dssp             HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHH
T ss_pred             CCCCHHHHHEEEECCCCCCCCHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHH
T ss_conf             10111132012101357664001112204567778898979979759999999999629988989899996987999999


Q ss_pred             ---CC-CCCCCCEEECCCCCCCCCCCHHH
Q ss_conf             ---25-87446612188886898772111
Q 002679          702 ---IC-NMRSLEMLNLSHNNLSDFIPRCF  726 (893)
Q Consensus       702 ---~~-~l~~L~~L~Ls~N~l~~~~~~~l  726 (893)
                         +. +...|+.|++.+|.+.......+
T Consensus       418 ~~~l~~~~~~L~~l~l~~~~~~~~~~~~l  446 (460)
T d1z7xw1         418 VESVRQPGCLLEQLVLYDIYWSEEMEDRL  446 (460)
T ss_dssp             HHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred             HHHHHHCCCCCCEEECCCCCCCHHHHHHH
T ss_conf             99997478866789898987898999999

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.92  E-value=1.8e-24  Score=133.29  Aligned_cols=14  Identities=43%  Similarity=0.506  Sum_probs=4.7

Q ss_pred             CCCCCCEEECCCCC
Q ss_conf             88879844164685
Q 002679          656 NLVKLHYLNLSTNQ  669 (893)
Q Consensus       656 ~l~~L~~L~Ls~N~  669 (893)
                      ++++|+.|++++|+
T Consensus       171 ~l~~L~~L~Ls~n~  184 (227)
T d1h6ua2         171 NLSKLTTLKADDNK  184 (227)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             CCCCCEECCCCCCC
T ss_conf             64633564458884

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7.7e-25  Score=135.05  Aligned_cols=85  Identities=15%  Similarity=0.186  Sum_probs=40.9

Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEECCCC-CCCCCCCCCCCCCCCCCCEE
Q ss_conf             99979987899777569724459999989858898799889-82245999999101788-55799997878989998799
Q 002679          107 PHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTI-PPQIGNLSMLKFLYLSA-NQFSGRIPPQIGHLSYIEAL  184 (893)
Q Consensus       107 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~-p~~l~~l~~L~~L~L~~-n~~~~~~p~~l~~l~~L~~L  184 (893)
                      +++++|++++|.+....+.+|.++++|++|++++|.+...+ +..|.++++++++.+.. +.+....+..+.++++|+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECCCCCCCCCCHHHHHCCCHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             98899987699189649668614643232110221124201001122222222211111234322222212222222222


Q ss_pred             ECCCCCC
Q ss_conf             6988657
Q 002679          185 HLFKNQL  191 (893)
Q Consensus       185 ~l~~~~~  191 (893)
                      +++++.+
T Consensus       109 ~l~~~~l  115 (242)
T d1xwdc1         109 LISNTGI  115 (242)
T ss_dssp             EEESCCC
T ss_pred             CCCHHHH
T ss_conf             3421111

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.4e-24  Score=133.72  Aligned_cols=36  Identities=11%  Similarity=0.043  Sum_probs=13.7

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf             998985889879988982245999999101788557
Q 002679          132 KLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQF  167 (893)
Q Consensus       132 ~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~  167 (893)
                      ++++|++++|.+....+..|.++++|++|++++|.+
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~   65 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV   65 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTT
T ss_pred             CCCEEECCCCCCCCCCHHHHHCCCHHHHHHHCCCCC
T ss_conf             889998769918964966861464323211022112

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.92  E-value=5e-24  Score=131.06  Aligned_cols=15  Identities=27%  Similarity=0.443  Sum_probs=4.8

Q ss_pred             CCCCCEEECCCCCCC
Q ss_conf             744661218888689
Q 002679          705 MRSLEMLNLSHNNLS  719 (893)
Q Consensus       705 l~~L~~L~Ls~N~l~  719 (893)
                      +++|+.|++++|+++
T Consensus       194 l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         194 LPNLIEVHLKNNQIS  208 (227)
T ss_dssp             CTTCCEEECTTSCCC
T ss_pred             CCCCCEEECCCCCCC
T ss_conf             999998979599689

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.91  E-value=6e-25  Score=135.59  Aligned_cols=90  Identities=28%  Similarity=0.379  Sum_probs=28.9

Q ss_pred             CCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEE
Q ss_conf             88879844164685875650665403676511244333787400002587446612188886898772111129999789
Q 002679          656 NLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYI  735 (893)
Q Consensus       656 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~l  735 (893)
                      ++++|+.|+|++|.+....+..+..+++|+.|+|++|++..+.+..|.++++|+.|+|++|+++++.+..|..++.|+.+
T Consensus        52 ~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l  131 (192)
T d1w8aa_          52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL  131 (192)
T ss_dssp             GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC
T ss_conf             87627213013632212121222112222101003553443497998079746552457745353597785687533420


Q ss_pred             ECCCCCCCCC
Q ss_conf             7327823003
Q 002679          736 DISYNELHGP  745 (893)
Q Consensus       736 ~ls~N~l~~~  745 (893)
                      ++++|++.|.
T Consensus       132 ~L~~N~~~~~  141 (192)
T d1w8aa_         132 NLASNPFNCN  141 (192)
T ss_dssp             ECTTCCBCCS
T ss_pred             CCCCCCCCCC
T ss_conf             0036443435

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.91  E-value=1.3e-24  Score=133.99  Aligned_cols=88  Identities=33%  Similarity=0.458  Sum_probs=32.4

Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCC
Q ss_conf             47653326870266456778601258866654107777456553221248887984416468587565066540367651
Q 002679          607 GKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSE  686 (893)
Q Consensus       607 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  686 (893)
                      .++++|+.|++++|.+....+..|..+++|++|++++|++....+..|.++++|+.|+|++|+++...+..|..+++|++
T Consensus        51 ~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~  130 (192)
T d1w8aa_          51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS  130 (192)
T ss_dssp             GGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
T ss_conf             78762721301363221212122211222210100355344349799807974655245774535359778568753342


Q ss_pred             CCCCCCCC
Q ss_conf             12443337
Q 002679          687 LDLSHNFL  694 (893)
Q Consensus       687 L~Ls~N~l  694 (893)
                      |+|++|.+
T Consensus       131 l~L~~N~~  138 (192)
T d1w8aa_         131 LNLASNPF  138 (192)
T ss_dssp             EECTTCCB
T ss_pred             CCCCCCCC
T ss_conf             00036443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.88  E-value=9.9e-22  Score=119.74  Aligned_cols=165  Identities=26%  Similarity=0.378  Sum_probs=0.0

Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             99997998789977756972445999998985889879988982245999999101788557999978789899987996
Q 002679          106 FPHLAYLDLQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALH  185 (893)
Q Consensus       106 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~  185 (893)
                      +..|++|+++++.+....+  +..+++|++|++++|.+++..+  ++.+++|++|++++|.++ .+| .+.++++|+.|+
T Consensus        45 L~~L~~L~l~~~~i~~l~~--l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEE
T ss_pred             HCCCCEEECCCCCCCCCHH--HHHCCCCCEEECCCCCCCCCCC--CCCCCCCCCCCCCCCCCC-CCC-CCCCCCCCCCCC
T ss_conf             5484589782798887444--7648998987698960258601--135862120143333321-222-121222111223


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             98865789898445799999899845887999899898899998889910786888899244699999799845887999
Q 002679          186 LFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCG  265 (893)
Q Consensus       186 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~  265 (893)
                      ++++.+..  ...+.+++.++.++++.|.+++  ...+..+++|+.+++++|.+.+..+  +.++++|+.|++++|.++ 
T Consensus       119 l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~-  191 (210)
T d1h6ta2         119 LEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-  191 (210)
T ss_dssp             CTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-
T ss_pred             CCCCCCCC--CCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCEEECCCCCCC-
T ss_conf             45653221--1220111112221122233345--4310001332100134643025645--367898999989799899-


Q ss_pred             CCCCCCCCCCCCCEEEEEC
Q ss_conf             8987678999887999426
Q 002679          266 SIPLFLGNLTNLDTLYLRN  284 (893)
Q Consensus       266 ~~~~~l~~l~~L~~L~L~~  284 (893)
                      .++ .+..+++|+.|++++
T Consensus       192 ~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         192 DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             BCG-GGTTCTTCSEEEEEE
T ss_pred             CCH-HHCCCCCCCEEECCC
T ss_conf             872-116999989997118

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.88  E-value=1.8e-21  Score=118.47  Aligned_cols=175  Identities=27%  Similarity=0.386  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             78997775697244599999898588987998898224599999910178855799997878989998799698865789
Q 002679          114 LQVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSG  193 (893)
Q Consensus       114 L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~  193 (893)
                      +..+.+.+.....  .+.++++|+++++.+...  ..+..+++|++|++++|.+++..|  ++++++|+.|+++.|.+..
T Consensus        25 l~~~~~~~~~~~~--~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~   98 (199)
T d2omxa2          25 LGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD   98 (199)
T ss_dssp             TTCSSTTSEECHH--HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             HCCCCCCCCCCHH--HHCCCCEEECCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCC
T ss_conf             6778778855987--946878998999999775--202137886757545655667640--1677522311112222222


Q ss_pred             CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf             89844579999989984588799989989889999888991078688889924469999979984588799989876789
Q 002679          194 PIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGN  273 (893)
Q Consensus       194 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~  273 (893)
                      ..+  +.+++.|+.++++++......+  +..+++|+.+++++|.+...  +.+..+++++.|++.+|.+++..+  +..
T Consensus        99 ~~~--l~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l~~--l~~  170 (199)
T d2omxa2          99 ITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP--LAN  170 (199)
T ss_dssp             CGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCGG--GTT
T ss_pred             CCC--CCCCCCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCCCCCC--CCC
T ss_conf             211--1112232221112222223210--00122367764311110023--433321111112234555567701--167


Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCCCCCCCEE
Q ss_conf             9988799942677788787455588888752
Q 002679          274 LTNLDTLYLRNNSFSSSIPSEIGNLKSLSIL  304 (893)
Q Consensus       274 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  304 (893)
                      +++|+.|++++|++++.  +.++.+++|+.|
T Consensus       171 l~~L~~L~ls~N~i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         171 LTTLERLDISSNKVSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             CCCCCEEECCCCCCCCC--CCCCCCCCCCCC
T ss_conf             99899997879979988--101278998949

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1e-22  Score=124.57  Aligned_cols=12  Identities=17%  Similarity=0.304  Sum_probs=4.1

Q ss_pred             CCCCCCEEECCC
Q ss_conf             874466121888
Q 002679          704 NMRSLEMLNLSH  715 (893)
Q Consensus       704 ~l~~L~~L~Ls~  715 (893)
                      .+++|+.|++++
T Consensus       223 ~~~~L~~L~l~~  234 (284)
T d2astb2         223 EIPTLKTLQVFG  234 (284)
T ss_dssp             GCTTCCEEECTT
T ss_pred             CCCCCCEEEEEC
T ss_conf             699989896448

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.85  E-value=4.3e-23  Score=126.43  Aligned_cols=91  Identities=23%  Similarity=0.333  Sum_probs=40.7

Q ss_pred             CCCCCCCCEEECCCCCCCCC----CCHHHHHCCCCCCCCCCCCCCCCCCCC----CCC--CCCCCCEEECCCCCCCCCC-
Q ss_conf             24888798441646858756----506654036765112443337874000----025--8744661218888689877-
Q 002679          654 LGNLVKLHYLNLSTNQFIQE----IPIKLEKLIHLSELDLSHNFLGKEIPS----QIC--NMRSLEMLNLSHNNLSDFI-  722 (893)
Q Consensus       654 l~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~~~~----~~~--~l~~L~~L~Ls~N~l~~~~-  722 (893)
                      +..+++|+.|++++|.+...    +...+...+.|++|+|++|.+.+....    .+.  ..+.|+.|++++|.+.... 
T Consensus       211 l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~  290 (344)
T d2ca6a1         211 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV  290 (344)
T ss_dssp             GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred             HCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHH
T ss_conf             21101211222333322222222344433232211110300475671566788877631568888989898986980899


Q ss_pred             ---CHHHH-CCCCCCEEECCCCCCCC
Q ss_conf             ---21111-29999789732782300
Q 002679          723 ---PRCFE-EMNGLLYIDISYNELHG  744 (893)
Q Consensus       723 ---~~~l~-~l~~L~~l~ls~N~l~~  744 (893)
                         ...+. .++.|+.+++++|.+..
T Consensus       291 ~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         291 RTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHHHHHCCCCCCCEEECCCCCCCC
T ss_conf             99999997038999989787980898

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.83  E-value=1.2e-22  Score=124.22  Aligned_cols=90  Identities=24%  Similarity=0.260  Sum_probs=37.3

Q ss_pred             CCCCCCEECCCCCCCCCC----CCCCCCCCCCCCEEECCCCCCCCCCCHHH----HH--CCCCCCCCCCCCCCCCC----
Q ss_conf             886665410777745655----32212488879844164685875650665----40--36765112443337874----
Q 002679          632 SLIQLEYLDLSSNRLSNS----IPRSLGNLVKLHYLNLSTNQFIQEIPIKL----EK--LIHLSELDLSHNFLGKE----  697 (893)
Q Consensus       632 ~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l----~~--l~~L~~L~Ls~N~l~~~----  697 (893)
                      ..+.|+.|++++|.+...    +...+..+++|+.|++++|.+.......+    ..  ...|++|++++|.+...    
T Consensus       213 ~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~  292 (344)
T d2ca6a1         213 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT  292 (344)
T ss_dssp             GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHH
T ss_pred             CHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHH
T ss_conf             10121122233332222222234443323221111030047567156678887763156888898989898698089999


Q ss_pred             CCCCCC-CCCCCCEEECCCCCCCCC
Q ss_conf             000025-874466121888868987
Q 002679          698 IPSQIC-NMRSLEMLNLSHNNLSDF  721 (893)
Q Consensus       698 ~~~~~~-~l~~L~~L~Ls~N~l~~~  721 (893)
                      +...+. ..++|+.|++++|.+...
T Consensus       293 l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         293 LKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             HHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHHHHHCCCCCCCEEECCCCCCCCC
T ss_conf             9999970389999897879808986

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=9.5e-20  Score=109.99  Aligned_cols=129  Identities=19%  Similarity=0.125  Sum_probs=80.0

Q ss_pred             CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCC
Q ss_conf             04765332687026645677860125886665410777745655322124888798441646858756506654036765
Q 002679          606 IGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLS  685 (893)
Q Consensus       606 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~  685 (893)
                      +.++..+++|++++|.++.. +..+..+++|+.|++++|.+...  ..+..+++|+.|++++|.+....+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CCCCCCCCEEECCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCC--CCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf             16857484897889978865-76200414599898979978764--7744576130643102134577763223345344


Q ss_pred             CCCCCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCC---CHHHHCCCCCCEEEC
Q ss_conf             11244333787400-00258744661218888689877---211112999978973
Q 002679          686 ELDLSHNFLGKEIP-SQICNMRSLEMLNLSHNNLSDFI---PRCFEEMNGLLYIDI  737 (893)
Q Consensus       686 ~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~---~~~l~~l~~L~~l~l  737 (893)
                      .|++++|.+..... ..+..+++|+.|++++|+++...   +..+..++.|+.+|-
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             CCEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHCCCCCEECC
T ss_conf             34203000166542110013653206640799634561069999987899583379

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=5.1e-18  Score=101.48  Aligned_cols=120  Identities=19%  Similarity=0.080  Sum_probs=93.5

Q ss_pred             CCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             666541077774565532212488879844164685-8756506654036765112443337874000025874466121
Q 002679          634 IQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQ-FIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLN  712 (893)
Q Consensus       634 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  712 (893)
                      ...+.++.+++.+. ..|..+..+++|+.|++++|+ +..+.+..|.++++|+.|+|++|+++.+.+..|..+++|++|+
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCEEEECCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEE
T ss_conf             99996985289976-58600257656574316898664436921225666667216202124774201112455433332


Q ss_pred             CCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf             88886898772111129999789732782300389992135320
Q 002679          713 LSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDAL  756 (893)
Q Consensus       713 Ls~N~l~~~~~~~l~~l~~L~~l~ls~N~l~~~~~~~~~~~~~~  756 (893)
                      |++|+++.+.+..+... .+..+++++|||.|+|...+ +..|.
T Consensus        87 Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~C~C~~~~-l~~~~  128 (156)
T d2ifga3          87 LSFNALESLSWKTVQGL-SLQELVLSGNPLHCSCALRW-LQRWE  128 (156)
T ss_dssp             CCSSCCSCCCSTTTCSC-CCCEEECCSSCCCCCGGGHH-HHHHH
T ss_pred             CCCCCCCCCCHHHHCCC-CCCCCCCCCCCCCCCCHHHH-HHHHH
T ss_conf             26787851574563353-21243357986338811799-99999

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=3.1e-17  Score=97.60  Aligned_cols=102  Identities=25%  Similarity=0.281  Sum_probs=50.6

Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf             41077774565532212488879844164685875650665403676511244333787400002587446612188886
Q 002679          638 YLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNN  717 (893)
Q Consensus       638 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  717 (893)
                      .|++++|.++.. + .++.++.|+.|++++|.+.+ +|..++.+++|+.|++++|.++.. + .+..+++|+.|++++|+
T Consensus         2 ~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSC
T ss_pred             EEECCCCCCCCC-C-CCCCCCCCCEEECCCCCCCC-CHHHHHHHHCCCCCCCCCCCCCCC-C-CCCCCCCCCEEECCCCC
T ss_conf             898689989887-1-01058988989797871686-521565543135453243211235-7-41233555768888986


Q ss_pred             CCCCC-CHHHHCCCCCCEEECCCCCCCC
Q ss_conf             89877-2111129999789732782300
Q 002679          718 LSDFI-PRCFEEMNGLLYIDISYNELHG  744 (893)
Q Consensus       718 l~~~~-~~~l~~l~~L~~l~ls~N~l~~  744 (893)
                      ++... ...+..++.|+.+++++|+++.
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCCCCCCHHHCCCCCCCEEECCCCCCCC
T ss_conf             5888882565379999999897996886

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=6.6e-17  Score=95.99  Aligned_cols=41  Identities=32%  Similarity=0.371  Sum_probs=13.5

Q ss_pred             HHHCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCEEECCCCCC
Q ss_conf             540367651124433378740-00025874466121888868
Q 002679          678 LEKLIHLSELDLSHNFLGKEI-PSQICNMRSLEMLNLSHNNL  718 (893)
Q Consensus       678 l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l  718 (893)
                      +..+++|+.|++++|++.... ...+..+++|+.|++++|++
T Consensus        61 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          61 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             CCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCEEECCCCCC
T ss_conf             123355576888898658888825653799999998979968

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.70  E-value=2.7e-19  Score=107.75  Aligned_cols=112  Identities=24%  Similarity=0.240  Sum_probs=48.4

Q ss_pred             CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             12588666541077774565532212488879844164685875650665403676511244333787400002587446
Q 002679          629 ELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSL  708 (893)
Q Consensus       629 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  708 (893)
                      .+..+++|+.|++++|.+... + .+..+++|+.|++++|.+.. ++.....++.|+.|++++|.++..  +.+..+++|
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L  117 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL--SGIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH--HHHHHHHHS
T ss_pred             HHHCCCCCCEEECCCCCCCCC-C-CCCCCCCCCCHHHCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCC
T ss_conf             776260461519944689986-4-42478253573413534321-000033221233333333222222--222222234


Q ss_pred             CEEECCCCCCCCCCC-HHHHCCCCCCEEECCCCCCCCC
Q ss_conf             612188886898772-1111299997897327823003
Q 002679          709 EMLNLSHNNLSDFIP-RCFEEMNGLLYIDISYNELHGP  745 (893)
Q Consensus       709 ~~L~Ls~N~l~~~~~-~~l~~l~~L~~l~ls~N~l~~~  745 (893)
                      +.|++++|+++.... ..+..++.|+.+++++|++...
T Consensus       118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             CCCCCCCCHHCCCCCCCCCCCCCCCCEEECCCCCCCCC
T ss_conf             11123410212554221236777630234279843467

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.64  E-value=5.1e-18  Score=101.47  Aligned_cols=128  Identities=24%  Similarity=0.228  Sum_probs=76.1

Q ss_pred             CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCC
Q ss_conf             41047653326870266456778601258866654107777456553221248887984416468587565066540367
Q 002679          604 SEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIH  683 (893)
Q Consensus       604 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  683 (893)
                      ..+..+++|++|++++|.+...  ..+..+++|+.|++++|.+.. ++.....+++|+.|++++|.++..  ..+..+++
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~  116 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL--SGIEKLVN  116 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH--HHHHHHHH
T ss_pred             HHHHCCCCCCEEECCCCCCCCC--CCCCCCCCCCCHHHCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCC
T ss_conf             6776260461519944689986--442478253573413534321-000033221233333333222222--22222223


Q ss_pred             CCCCCCCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCHH----------HHCCCCCCEEE
Q ss_conf             6511244333787400-00258744661218888689877211----------11299997897
Q 002679          684 LSELDLSHNFLGKEIP-SQICNMRSLEMLNLSHNNLSDFIPRC----------FEEMNGLLYID  736 (893)
Q Consensus       684 L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~----------l~~l~~L~~l~  736 (893)
                      |+.|++++|+++.... ..+..+++|+.|++++|++....+..          +..++.|+.+|
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             CCCCCCCCCHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEC
T ss_conf             4111234102125542212367776302342798434676322220558999998788958769

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.3e-15  Score=89.68  Aligned_cols=86  Identities=27%  Similarity=0.192  Sum_probs=33.5

Q ss_pred             CCCCCCEECCCCC-CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             8866654107777-456553221248887984416468587565066540367651124433378740000258744661
Q 002679          632 SLIQLEYLDLSSN-RLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEM  710 (893)
Q Consensus       632 ~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  710 (893)
                      .+++|++|++++| .+..+.+..|.++++|+.|++++|+++.+.+..|..+++|+.|+|++|+++...+..|.. .+|+.
T Consensus        29 ~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~  107 (156)
T d2ifga3          29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQE  107 (156)
T ss_dssp             SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCE
T ss_pred             CCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHCC-CCCCC
T ss_conf             76565743168986644369212256666672162021247742011124554333322678785157456335-32124


Q ss_pred             EECCCCCC
Q ss_conf             21888868
Q 002679          711 LNLSHNNL  718 (893)
Q Consensus       711 L~Ls~N~l  718 (893)
                      |+|++|++
T Consensus       108 L~L~~Np~  115 (156)
T d2ifga3         108 LVLSGNPL  115 (156)
T ss_dssp             EECCSSCC
T ss_pred             CCCCCCCC
T ss_conf             33579863

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=4.2e-12  Score=72.38  Aligned_cols=68  Identities=34%  Similarity=0.239  Sum_probs=31.4

Q ss_pred             CCCCCCCCEEECCCCCCCCCC--CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf             248887984416468587565--06654036765112443337874000025874466121888868987
Q 002679          654 LGNLVKLHYLNLSTNQFIQEI--PIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDF  721 (893)
Q Consensus       654 l~~l~~L~~L~Ls~N~l~~~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  721 (893)
                      ...++.|+.|+|++|+++...  +..+..+++|+.|+|++|.+....+-.+.....|+.|++++|++...
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             HHHCCCCCEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCC
T ss_conf             9748787886377766667731588986588561000435721342344222033104266489976767

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=4.6e-12  Score=72.17  Aligned_cols=69  Identities=26%  Similarity=0.110  Sum_probs=30.2

Q ss_pred             HHHHCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCC
Q ss_conf             6540367651124433378740--00025874466121888868987721111299997897327823003
Q 002679          677 KLEKLIHLSELDLSHNFLGKEI--PSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGP  745 (893)
Q Consensus       677 ~l~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~l~ls~N~l~~~  745 (893)
                      ....++.|++|+|++|+++...  +..+..+++|+.|++++|.++...+-.+.....++.+++++||+.+.
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             HHHHCCCCCEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCC
T ss_conf             89748787886377766667731588986588561000435721342344222033104266489976767

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.86  E-value=2.5e-09  Score=58.68  Aligned_cols=89  Identities=19%  Similarity=0.228  Sum_probs=43.0

Q ss_pred             CCCCCCCCCEEECCCCCCCC----CCCHHHHHCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCEEECCCCCCCCC---
Q ss_conf             12488879844164685875----6506654036765112443337874----000025874466121888868987---
Q 002679          653 SLGNLVKLHYLNLSTNQFIQ----EIPIKLEKLIHLSELDLSHNFLGKE----IPSQICNMRSLEMLNLSHNNLSDF---  721 (893)
Q Consensus       653 ~l~~l~~L~~L~Ls~N~l~~----~~~~~l~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~---  721 (893)
                      ++...+.|+.|+|++|.+..    .+...+...+.|++|+|++|.+...    +...+...++|+.|++++|.+...   
T Consensus        39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~  118 (167)
T d1pgva_          39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ  118 (167)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred             HHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHH
T ss_conf             97637764540120156215679887531000234330033010214599999999998489389877887768886579


Q ss_pred             ----CCHHHHCCCCCCEEECCCCC
Q ss_conf             ----72111129999789732782
Q 002679          722 ----IPRCFEEMNGLLYIDISYNE  741 (893)
Q Consensus       722 ----~~~~l~~l~~L~~l~ls~N~  741 (893)
                          +...+...+.|..++++++.
T Consensus       119 ~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         119 VEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHHCCCCCEEECCCCC
T ss_conf             999999999729985386486888

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.43  E-value=9.1e-08  Score=51.02  Aligned_cols=91  Identities=15%  Similarity=0.193  Sum_probs=39.4

Q ss_pred             CCCCCCCCCEEECCCCCCCCCC----CHHHHHCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCEEEC--CCCCCCCC-
Q ss_conf             1248887984416468587565----06654036765112443337874----0000258744661218--88868987-
Q 002679          653 SLGNLVKLHYLNLSTNQFIQEI----PIKLEKLIHLSELDLSHNFLGKE----IPSQICNMRSLEMLNL--SHNNLSDF-  721 (893)
Q Consensus       653 ~l~~l~~L~~L~Ls~N~l~~~~----~~~l~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L--s~N~l~~~-  721 (893)
                      ++...+.|+.|++++|.+....    ...+...++++.+++++|.+...    +...+...++|+.++|  ++|.+... 
T Consensus        41 al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~  120 (166)
T d1io0a_          41 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV  120 (166)
T ss_dssp             HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred             HHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHH
T ss_conf             88419825743015896117789999987752122101210254322014788999998486524773216778676799


Q ss_pred             ---CCHHHHCCCCCCEEECCCCCCC
Q ss_conf             ---7211112999978973278230
Q 002679          722 ---IPRCFEEMNGLLYIDISYNELH  743 (893)
Q Consensus       722 ---~~~~l~~l~~L~~l~ls~N~l~  743 (893)
                         +...+...+.|+.+++++++..
T Consensus       121 ~~~La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_         121 EMEIANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHCCCCCEEECCCCCCC
T ss_conf             9999999984998478858189876

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.24  E-value=9.8e-08  Score=50.87  Aligned_cols=14  Identities=7%  Similarity=-0.014  Sum_probs=5.9

Q ss_pred             CCCCCCCEEECCCC
Q ss_conf             58744661218888
Q 002679          703 CNMRSLEMLNLSHN  716 (893)
Q Consensus       703 ~~l~~L~~L~Ls~N  716 (893)
                      ...+.|+.|+++.+
T Consensus       129 ~~n~~L~~L~l~~~  142 (166)
T d1io0a_         129 EKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHCSSCCEEECCCS
T ss_pred             HHCCCCCEEECCCC
T ss_conf             84998478858189