Citrus Sinensis ID: 002682

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890---
Protein Sequence
MEKGSTAEKNIISFPTAEKLEGNTLDFQIKDQPLEESKSLNISNDNCGDNNNNEQDDLGDKINESSDVDSKAQAEKLDINFEHDDLAMMDKSRDLESKTSELGSRNFESKAAESVDVGKMDESGHLESKTAECDDVGKSDENRDSESKAAECADVGKMDKSRDLEFKAAECLDVGKINENKDLEYKAAEGVEMGMMDESKDLESKAVECIDLSKMSKDFKSKATECVDLGHIDESRDIESKGAGEKLDCKNERGESRDADRVIVAGVLDSTAQVERDQETIGEEEREPEPVFDGTEVPGMEANRSTSTRSLELDLEAEGSVWPEKAAALKNFVKEKGSGAVANVMRRLSGKKDETGQDVSIDEDNVASDSGKDSEAVEASKRMAERYSWNPLNYIKMSSDVDSENRTEQRQEVVKEPPQPLVMKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDEKIEYLITEAPPFEAPLPPLSGEDDLSSSGAIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSEDQYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYRFLDHDPLVSSQCHNIPRGIIDAKPKPISEIALRLRFLSYAIFEAYLSEDGRHVDYRTIHGSEEFARYLRTVQELQRVELQDMPREEMLAFFINLYNMMAIHAILVCGHPIGALERRKFFGDFKYVIGGYTYSLSAIQNGILRGNQRPPYNLMKPFGAKDKRSQVALPYPEPSTHFALVCGTRSSPALRCYSPGNIDKELMKAARSFLRGGGLVIDLHAKVATMSMVLKWYSVDFGKNEVEVLKHASNYLEPTASEALLEALANSQLKVTYQPYDWGLNI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccHHHHHHHccccccccccccHHHHHHHHHccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHcccccccccEEEEcccccHHHHHHHccccccccccccccccEEEEEEccccHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHccccccEEEEccEEEccHHHHHHHHHccccHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHcccEEcccccccEEEcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccEEcccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHcccccccEEEEccEEEcHHHHHHHHHccccccccccccccccccccccccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHccccEEEccccEEEEcHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHcccccEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHEEccccHHHHccccccEEEccccccccccEEEccccccccccccccccccccccccccccHHHHHHcccccccccHHHHccccccccccccccccccHcHHcHccccccccccccccccccccccccccccccccHHHHHHHHccccccccccHHEEEEEEcccccccccccHHHHHHHHHHccccccccccccccccEEEcHHHHHcHHHHHHHccccccccccccHHHcccccccccccccccccccccEcccccccccccccccHccccHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEcccccccEEEEccccEEEEEEccccccccccccccccccccccEEEEEEEEEEccccHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHccccccEEEEccEEEccHHHHHHHccccHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHccccccccEEEEEEcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHccHHHHHHHHHHHHHHHcccHHHccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHEEccccEEcHHHHHHHHHccccccccccccccccccHHHHccccccccEEEEEEEccccccccEEEEcHHHHHHHHHHHHHHHHHcccEEEEccccEEEHHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHHccccEEEEEEcccEEcc
Coil and Loop (DISEMBL)
mekgstaekniisfptaeklegntldfqikdqpleeskslnisndncgdnnnneqddlgdkinessdvdsKAQAEKLDInfehddlammdksrdlesktselgsrnfeskaaesvdvgkmdesghlesktaecddvgksdenrdseskaaecadvgkmdksrdLEFKAAEcldvgkinenkdleYKAAEGVEMGMMDESKDLESKAVECIDLSKMskdfkskatecvdlghidesrdieskgagekldcknergesrdadRVIVAGVLDstaqverdqetigeeerepepvfdgtevpgmeanrststrsleldleaegsvwPEKAAALKNFVKEKGSGAVANVMRRLsgkkdetgqdvsidednvasdsgkdsEAVEASKRMAERyswnplnyikmssdvdsenrTEQRQevvkeppqplvmkgRVILYTRLGCQESREVRLFLYWKRLRYVEINidvypsrkmelekfagssavpkVFFNEILMGGLSELkaldesgkldEKIEYLIteappfeaplpplsgeddlsssgaiDELALIVLKMKENVVVKDRFYKMrrftncflgseavnflsedqylEREEAVEFGRKLASKLFFRHVLdenlfedgnhlyrfldhdplvssqchniprgiidakpkpiSEIALRLRFLSYAIFEAYLsedgrhvdyrtihGSEEFARYLRTVQELQRVELQDMPREEMLAFFINLYNMMAIHAILVCghpigalerrkffgdfkyvIGGYTYSLSAIQNgilrgnqrppynlmkpfgakdkrsqvalpypepsthfalvcgtrsspalrcyspgniDKELMKAARSFLRGGGLVIDLHAKVATMSMVLKWYSVDFGKNEVEVLKHASNYLEPTASEALLEALANSQlkvtyqpydwglni
Flexible Loop (DISEMBL)
mekgstaekniisfptaeklegntLDFQIKDQPLEESKSLNISNDNCGDNNNNEQDDLGDKINESSDVDSKAQAEKLDINFEHDDLAMMDKSRDLESktselgsrnfeskaaesvdvgkmdesghlesktaecddvgksdenrdseskaaecadvgkmdksrDLEFKAAecldvgkinenkdLEYKAAEGVEMGMMDESKDLESKAVECIDLSkmskdfkskatecvdlghidesrdieskgagekldcknergesrdadrvivagvldstaqverdqetigeeerepepvfdgtevpgmeanrststrslELDLEAEGSVWPEKAAALKNfvkekgsgavanVMRRlsgkkdetgqdvsidednvasdsgkdsEAVEASKRmaeryswnplnyiKMSSDVDSENRTEQRqevvkeppqplvmkgRVILYtrlgcqesreVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDEKIEYLITEAPPFEAPLPPLSGEDDLSSSGAIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSEDQYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYRFLDHDPLVSSQCHNIPrgiidakpkpISEIALRLRFLSYAIFEAYLSEDGRHVDYRTIHGSEEFARYLRTVQELQRVELQDMPREEMLAFFINLYNMMAIHAILVCGHPIGALERRKFFGDFKYVIGGYTYSLSAIQNGILRGNQRPPYNLMKPFGAKDKRSQVALPYPEPSTHFALVCGTRSSPALRCYSPGNIDKELMKAARSFLRGGGLVIDLHAKVATMSMVLKWYSVDFGKNEVEVLKHASNYLEPTASEALLEALANSqlkvtyqpydwglni
Low Complexity Region (SEG)
MEKGSTAEKNIISFPTAEKLEGNTLDFQIKDQPLEESKSLnisndncgdnnnneqddLGDKINESSDVDSKAQAEKLDINFEHDDLAMMDKSRDLESKTSELGSRNFESKAAESVDVGKMDESGHLESKTAECDDVGKSDENRDSESKAAECADVGKMDKSRDLEFKAAECLDVGKINENKDLEYKAAEGVEMGMMDESKDLESKAVECIDLSKMSKDFKSKATECVDLGHIDESRDIESKGAGEKLDCKNERGESRDADRVIVAGVLDSTAQVERDQETIGeeerepepVFDGTEVPGMEANRSTSTRSLELDLEAEGSVWPEKAAALKNFVKEKGSGAVANVMRRLSGKKDETGQDVSIDEDNVASDSGKDSEAVEASKRMAERYSWNPLNYIKMSSDVDSENRTEQRQEVVKEPPQPLVMKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDEKIEYLITeappfeaplpplSGEDDLSSSGAIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSEDQYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYRFLDHDPLVSSQCHNIPRGIIDAKPKPISEIALRLRFLSYAIFEAYLSEDGRHVDYRTIHGSEEFARYLRTVQELQRVELQDMPREEMLAFFINLYNMMAIHAILVCGHPIGALERRKFFGDFKYVIGGYTYSLSAIQNGILRGNQRPPYNLMKPFGAKDKRSQVALPYPEPSTHFALVCGTRSSPALRCYSPGNIDKELMKAARSFLRGGGLVIDLHAKVATMSMVLKWYSVDFGKNEVEVLKHASNYleptaseallealaNSQLKVTYQPYDWGLNI
Disordered region (IsUnstruct)
***********************************************************************************************************************************************************************AAECLDVGKI************************************************************************************VIVAGV*************************************************************************************************************************W**LNY**************************LVMKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDEKIEYLIT**********************AIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSEDQYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYRFLDHDPLVSSQCHNIPRGIIDAKPKPISEIALRLRFLSYAIFEAYLSEDGRHVDYRTIHGSEEFARYLRTVQELQRVELQDMPREEMLAFFINLYNMMAIHAILVCGHPIGALERRKFFGDFKYVIGGYTYSLSAIQNGILRGNQ***YNL********************STHFALVCGTRSSPALRCYSPGNIDKELMKAARSFLRGGGLVIDLHAKVATMSMVLKWYSVDFGKNEVEVLKHASNYLEPTASEALLEALANSQLKVTYQPYDWGL**
Disordered Region (DISOPRED)
**************PTAEKLEGNTLDFQ***********************************************KLDINFEH**********************************************************************************FKAAECLDVGKI**************************************************************************************************************************************************EKAAALKNFVKEKGSGAVANVMRR***************************************YSWNPLNYIKMSSDVDS******************VMKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP*************AVPKVFFNEILMGGLSELKALDESGKLD**************************************************RFYKMRRFTNCFLGSEAVNFLSEDQYLE*********KLASKL*************************L**SQCHNIPRGIIDAKPKPISEIALRLRFLSYAIFEAYLSEDGRHVDYRTIHGSEEFARYLRTVQELQRVEL**MPREEMLAFFINLYNMMAIHAILVCGHPIGALERRKFFGDFKYVIGGYTYSLSAIQNGILRGNQRP**********KDKRSQVALPYPEPSTHFALVCGTRSSPALRCYSPGNIDKELMKAARSFLRGGGLVIDLHAKVATMSMVLKWYSVDFGKNEVEVLKHASNYLEPTA********ANSQLKVTYQPYDWGLNI
Disordered Region (DISEMBL)
********KNIISFPTAEKLEGNTLDFQIKDQPLEESKSLNISNDNCGDNNNNEQDDLGDKINESSDVDSKAQAEKLDINFEHDDLAMMDKS**************FESKAAESVDVGKMDESGHLE****************************GKMDKSRDLEFKAAECLDVGKINENKDLEYKAAEGVEMGMMDESKDLESKAVECIDLSKMSKDFKSKATECVDLGHIDESRDIESKGAGEKLDCKNERGESRDADRVIVAGVLDST*******************VFDGTEVPGMEANRSTSTRSLELDLEAEGSVWPEKAAALKNFVKEKGSGAVANVMRRLSGKKDETGQDVSIDE******************RMAERYSWNPLNYIKMSS****************EPPQPLVMKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDEKIEYLITEAPPFEAPLPPLSGEDDLSSSGAIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSEDQYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYRFLDHDPLVSSQCHNIPRGIIDAKPKPISEIALRLRFLSYAIFEAYLSEDGRHVDYRTIHGSEEFARYLRTVQELQRVELQDMPREEMLAFFINLYNMMAIHAILVCGHPIGALERRKFFGDFKYVIGGYTYSLSAIQNGILRGNQRPPYNLMKPFGAKDKRSQVALPYPEPSTHFALVCGTRSSPALRCYSPGNIDKELMKAARSFLRGGGLVIDLHAKVATMSMVLKWYSVDFGKNEVEVLKHASNYLEPTASEALLEALANSQLKVTYQPYDWGLNI
Disordered Region (DISPRO)
*****TAEKNIISFPTAEKLEGNTLDFQIKDQPLEESKSLNISNDNC*********************DSKA*A***D**FEHDDLA**********************************************************************MDKSRDLEFKAAECLDVGKI*******YKAA********D*SKDLESKAVECIDLSKMSKDFKSKATEC***************************************************************PVFDGT*VP**************L****EGSVWPEKAAALKNFVKEKGSGAVANVMRRLS***************************VEAS*RMAERYSWNPLNYIKMSSDVD*********EVVKEPPQPLVMKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDEKIEYLITEAPPFEAPLPPLSGEDD*SSSGAIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSEDQYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYRFLDHDPLVSSQCHNIPRGIIDAKPKPISEIALRLRFLSYAIFEAYLSEDGRHVDYRTIHGSEEFARYLRTVQELQRVELQDMPREEMLAFFINLYNMMAIHAILVCGHPIGALERRKFFGDFKYVIGGYTYSLSAIQNGILRGNQRPPYNLMKPFGAKDKRSQVALPYPEPSTHFALVCGTRSSPALRCYSPGNIDKELMKAARSFLRGGGLVIDLHAKVATMSMVLKWYSVDFGKNEVEVLKHASNYLEPTASEALLEALANSQLKVTYQPYDWGLNI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKGSTAEKNIISFPTAEKLEGNTLDFQIKDQPLEESKSLNISNDNCGDNNNNEQDDLGDKINESSDVDSKAQAEKLDINFEHDDLAMMDKSRDLESKTSELGSRNFESKAAESVDVGKMDESGHLESKTAECDDVGKSDENRDSESKAAECADVGKMDKSRDLEFKAAECLDVGKINENKDLEYKAAEGVEMGMMDESKDLESKAVECIDLSKMSKDFKSKATECVDLGHIDESRDIESKGAGEKLDCKNERGESRDADRVIVAGVLDSTAQVERDQETIGEEEREPEPVFDGTEVPGMEANRSTSTRSLELDLEAEGSVWPEKAAALKNFVKEKGSGAVANVMRRLSGKKDETGQDVSIDEDNVASDSGKDSEAVEASKRMAERYSWNPLNYIKMSSDVDSENRTEQRQEVVKEPPQPLVMKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDEKIEYLITEAPPFEAPLPPLSGEDDLSSSGAIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSEDQYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYRFLDHDPLVSSQCHNIPRGIIDAKPKPISEIALRLRFLSYAIFEAYLSEDGRHVDYRTIHGSEEFARYLRTVQELQRVELQDMPREEMLAFFINLYNMMAIHAILVCGHPIGALERRKFFGDFKYVIGGYTYSLSAIQNGILRGNQRPPYNLMKPFGAKDKRSQVALPYPEPSTHFALVCGTRSSPALRCYSPGNIDKELMKAARSFLRGGGLVIDLHAKVATMSMVLKWYSVDFGKNEVEVLKHASNYLEPTASEALLEALANSQLKVTYQPYDWGLNI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	893	2.2.26 [Sep-21-2011]
Q5AW24	1831	Vacuolar membrane-associa	yes	no	0.095	0.046	0.397	9e-08
Q6FK84	1804	Vacuolar membrane-associa	yes	no	0.082	0.041	0.389	1e-06
Q1E9Q9	1857	Vacuolar membrane-associa	N/A	no	0.090	0.043	0.364	2e-06
P47170	1584	Vacuolar membrane-associa	yes	no	0.098	0.055	0.288	6e-06
Q0CHV5	1830	Vacuolar membrane-associa	N/A	no	0.095	0.046	0.363	6e-06
Q4WHH4	1836	Vacuolar membrane-associa	yes	no	0.095	0.046	0.352	7e-06
A1DFV9	1842	Vacuolar membrane-associa	N/A	no	0.095	0.046	0.352	7e-06
Q2UMR9	1824	Vacuolar membrane-associa	yes	no	0.091	0.044	0.352	7e-06
A1CEE0	1845	Vacuolar membrane-associa	N/A	no	0.095	0.046	0.352	1e-05
Q9HU55	84	Glutaredoxin OS=Pseudomon	yes	no	0.085	0.904	0.355	2e-05

>sp|Q5AW24|IML1_EMENI Vacuolar membrane-associated protein iml1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=iml1 PE=3 SV=1

 Score = 59.7 bits (143), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 530  SSGAIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED--QYLEREEAVEF 587
            SS ++  LA IV +  + V + DR +  R   NCF+GSE   +L ++      REEAVEF
Sbjct: 1311 SSISLSSLAQIV-QSDKGVRMMDRRWHWRLHYNCFIGSEFTTWLCQNFRDIETREEAVEF 1369

Query: 588  GRKLASKLFFRHVLDENLFEDGNHLYRF 615
            G KL     F+HV   + F DGN+ Y+ 
Sbjct: 1370 GNKLLELNLFQHVEQRHKFRDGNYFYQI 1397

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q6FK84|IML1_CANGA Vacuolar membrane-associated protein IML1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=IML1 PE=3 SV=1

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 3/77 (3%)

Query: 542  LKMKENVV-VKDRFYKMRRFTNCFLGSEAVNFLSED--QYLEREEAVEFGRKLASKLFFR 598
            L+M EN + +  R +  +R  NCF+GSE VN+L  +      R  A+ +G+KL +   F 
Sbjct: 1411 LQMGENKLNLVTRKWHWKRHANCFVGSEMVNWLIRNFSDIDTRSTAISYGQKLMNDGLFI 1470

Query: 599  HVLDENLFEDGNHLYRF 615
            HVLD++ F DGN+ Y+ 
Sbjct: 1471 HVLDKHSFLDGNYFYQI 1487

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|Q1E9Q9|IML1_COCIM Vacuolar membrane-associated protein IML1 OS=Coccidioides immitis (strain RS) GN=IML1 PE=3 SV=2

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 537  LALIVLKMK--ENVVVKDRFYKMRRFTNCFLGSEAVNFLSED--QYLEREEAVEFGRKLA 592
            LA +  K++  + V + DR +  R   NCF+G E   +L ++      REEAVEFG  L 
Sbjct: 1329 LAFLAQKIQGEKGVRMMDRRWHWRLHYNCFVGMEFTTWLLQNFRDIDTREEAVEFGNDLM 1388

Query: 593  SKLFFRHVLDENLFEDGNHLYRFLD 617
            +   F HV   + F DGN+ Y+  D
Sbjct: 1389 THGLFHHVQRRHNFRDGNYFYQIAD 1413

Coccidioides immitis (strain RS) (taxid: 246410)

>sp|P47170|IML1_YEAST Vacuolar membrane-associated protein IML1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IML1 PE=1 SV=1

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 56/90 (62%), Gaps = 2/90 (2%)

Query: 528  LSSSGAIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED--QYLEREEAV 585
            L+ +  + +LA  + + ++ + + +R +  ++   CF+GSE VN+L  +      RE+A+
Sbjct: 1182 LNRNVELSKLAYQIQRGEDRITLVNRKWHWKKHEKCFVGSEMVNWLIRNFSDIDTREDAI 1241

Query: 586  EFGRKLASKLFFRHVLDENLFEDGNHLYRF 615
            ++G+K+  +  F HVL+++ F DG++ Y+F
Sbjct: 1242 KYGQKVMKEGLFVHVLNKHNFLDGHYFYQF 1271

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q0CHV5|IML1_ASPTN Vacuolar membrane-associated protein iml1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=iml1 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 530  SSGAIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED--QYLEREEAVEF 587
            SS ++  LA I+ +    V + DR +  R   NCF+G E   +L ++      REEAVEF
Sbjct: 1304 SSISLSSLAQII-QGDNGVRMMDRRWHWRLHYNCFIGFELTTWLLQNFRDIDTREEAVEF 1362

Query: 588  GRKLASKLFFRHVLDENLFEDGNHLYRF 615
            G +L     F+HV   + F DGN+ Y+ 
Sbjct: 1363 GDQLMKHGLFQHVEKRHNFRDGNYFYQI 1390

Aspergillus terreus (strain NIH 2624 / FGSC A1156) (taxid: 341663)

>sp|Q4WHH4|IML1_ASPFU Vacuolar membrane-associated protein iml1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=iml1 PE=3 SV=1

 Score = 53.5 bits (127), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 530  SSGAIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED--QYLEREEAVEF 587
            SS ++  LA I+ + ++ V + DR +  R   NCF+G E   +L ++      REEAV+F
Sbjct: 1324 SSISLSSLAQII-QGEKGVRMMDRRWHWRLHYNCFIGFEFTTWLLQNFRDIDSREEAVQF 1382

Query: 588  GRKLASKLFFRHVLDENLFEDGNHLYRF 615
            G +L     F+HV   + F DGN+ Y+ 
Sbjct: 1383 GNELMKHGLFQHVEKRHNFRDGNYFYQI 1410

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|A1DFV9|IML1_NEOFI Vacuolar membrane-associated protein iml1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=iml1 PE=3 SV=1

 Score = 53.5 bits (127), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 530  SSGAIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED--QYLEREEAVEF 587
            SS ++  LA I+ + ++ V + DR +  R   NCF+G E   +L ++      REEAV+F
Sbjct: 1325 SSISLSSLAQII-QGEKGVRMMDRRWHWRLHYNCFIGFEFTTWLLQNFRDIDSREEAVQF 1383

Query: 588  GRKLASKLFFRHVLDENLFEDGNHLYRF 615
            G +L     F+HV   + F DGN+ Y+ 
Sbjct: 1384 GNELMKHGLFQHVEKRHNFRDGNYFYQI 1411

Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117)

>sp|Q2UMR9|IML1_ASPOR Vacuolar membrane-associated protein iml1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=iml1 PE=3 SV=2

 Score = 53.5 bits (127), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 533  AIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED--QYLEREEAVEFGRK 590
            ++  LA I+ + ++ V + DR +  R   NCF+G E   +L ++      REEAVEFG +
Sbjct: 1311 SLSSLAQII-QGEKGVRMMDRRWHWRLHYNCFIGFELTTWLLQNFRDIDSREEAVEFGNE 1369

Query: 591  LASKLFFRHVLDENLFEDGNHLYRF 615
            L     F+HV   + F DGN+ Y+ 
Sbjct: 1370 LMKHGLFQHVEKRHNFRDGNYFYQI 1394

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

>sp|A1CEE0|IML1_ASPCL Vacuolar membrane-associated protein iml1 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=iml1 PE=3 SV=1

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 530  SSGAIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED--QYLEREEAVEF 587
            SS ++  LA I+ +  + V + DR +  R   NCF+G E   +L ++      REEAV+F
Sbjct: 1331 SSISLSSLAHII-QGDKGVRMMDRRWHWRLHYNCFIGFELTTWLLQNFRDIDSREEAVDF 1389

Query: 588  GRKLASKLFFRHVLDENLFEDGNHLYRF 615
            G +L     F+HV   + F DGN+ Y+ 
Sbjct: 1390 GNELMKHGLFQHVEKRHNFRDGNYFYQI 1417

Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) (taxid: 344612)

>sp|Q9HU55|GLRX_PSEAE Glutaredoxin OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=grx PE=3 SV=1

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 42/76 (55%)

Query: 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILM 486
           V++YT   C      +  L  K + + EI  D  P  + EL + AGS+ VP+++  E  +
Sbjct: 4   VVIYTTAWCPYCIRAKQLLQRKGVDFQEIACDGKPELRAELARKAGSTTVPQIWIGETHV 63

Query: 487 GGLSELKALDESGKLD 502
           GG  +L AL+ +GKLD
Sbjct: 64  GGCDDLHALERAGKLD 79

Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	893
359492818	649	PREDICTED: uncharacterized protein LOC10	0.681	0.938	0.754	0.0
449442078	753	PREDICTED: uncharacterized protein LOC10	0.731	0.867	0.682	0.0
449490220	753	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.731	0.867	0.681	0.0
255545592	731	electron transporter, putative [Ricinus	0.771	0.942	0.650	0.0
302141902	579	unnamed protein product [Vitis vinifera]	0.647	0.998	0.745	0.0
356518503	745	PREDICTED: uncharacterized protein LOC10	0.786	0.942	0.612	0.0
242095204	712	hypothetical protein SORBIDRAFT_10g00791	0.751	0.942	0.616	0.0
222635231	711	hypothetical protein OsJ_20649 [Oryza sa	0.688	0.864	0.653	0.0
115467176	711	Os06g0224200 [Oryza sativa Japonica Grou	0.688	0.864	0.652	0.0
413944121	729	hypothetical protein ZEAMMB73_930395 [Ze	0.696	0.853	0.633	0.0

>gi|359492818|ref|XP_002284291.2| PREDICTED: uncharacterized protein LOC100257505 isoform 1 [Vitis vinifera]

 Score =  967 bits (2501), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/615 (75%), Positives = 536/615 (87%), Gaps = 6/615 (0%)

Query: 284 EEREPEPVFDGTEVPGMEANRSTSTRSLELDLEAEGSVWPEKAAALKNFVKEKGSGAVAN 343
           EE+EPEPVFDGTE+PGMEA+RS STR L+LD E +GS WPEKA ALKNFVKEKG+ AV++
Sbjct: 34  EEKEPEPVFDGTEIPGMEASRSMSTRPLDLDTETQGSAWPEKAVALKNFVKEKGTVAVSS 93

Query: 344 VMRRLSGKKDETGQDVSIDEDNVAS------DSGKDSEAVEASKRMAERYSWNPLNYIKM 397
           V+R LSGK +E       DED   +      DS K+ EA EAS++  ER +WNPLNYIK+
Sbjct: 94  VLRVLSGKTEEDVHAAQDDEDKNKTGVKEVVDSPKEGEAKEASQKPVERSAWNPLNYIKI 153

Query: 398 SSDVDSENRTEQRQEVVKEPPQPLVMKGRVILYTRLGCQESREVRLFLYWKRLRYVEINI 457
           S +VD+EN+TEQ++E+++EP +P+ MKGR+ILYTRLGCQES+EVR FL  +RLRYVEINI
Sbjct: 154 SREVDAENKTEQKEEIIEEPARPVGMKGRIILYTRLGCQESKEVRRFLLQRRLRYVEINI 213

Query: 458 DVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDEKIEYLITEAPPFEA 517
           DVYPSRK+ELEK AGS AVPK+FFNE+L+GGL+E+K LDESGKLDEKI Y+I+EAP FEA
Sbjct: 214 DVYPSRKLELEKIAGSCAVPKLFFNEVLIGGLNEVKGLDESGKLDEKINYVISEAPSFEA 273

Query: 518 PLPPLSGEDDLSSSGAIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSEDQ 577
           PLPPLSGEDDLSSSGAIDELA IVLKMKE++VVKDRFY+MRRFTNCFLGSEAV+F+SEDQ
Sbjct: 274 PLPPLSGEDDLSSSGAIDELAAIVLKMKESIVVKDRFYRMRRFTNCFLGSEAVDFISEDQ 333

Query: 578 YLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYRFLDHDPLVSSQCHNIPRGIIDAK 637
           YLEREEA+EFGRKLASK FF++VLDEN FEDGNHLYRFLDHDP+VSSQCHN  RGI+D K
Sbjct: 334 YLEREEAIEFGRKLASKHFFQNVLDENDFEDGNHLYRFLDHDPVVSSQCHNFLRGILDVK 393

Query: 638 PKPISEIALRLRFLSYAIFEAYLSEDGRHVDYRTIHGSEEFARYLRTVQELQRVELQDMP 697
           PKPI EIA RLRFLSYAIFEAY SEDG+HVDYR+IHGSEEFARYLR V+ELQRV+LQDMP
Sbjct: 394 PKPIIEIASRLRFLSYAIFEAYTSEDGKHVDYRSIHGSEEFARYLRIVEELQRVDLQDMP 453

Query: 698 REEMLAFFINLYNMMAIHAILVCGHPIGALERRKFFGDFKYVIGGYTYSLSAIQNGILRG 757
           REE LAFFINLYNMMAIH ILV G P+G LERRK  G+FKYV+GG TYSLS I NGILRG
Sbjct: 454 REEKLAFFINLYNMMAIHGILVWGFPVGPLERRKLLGEFKYVVGGCTYSLSVIANGILRG 513

Query: 758 NQRPPYNLMKPFGAKDKRSQVALPYPEPSTHFALVCGTRSSPALRCYSPGNIDKELMKAA 817
           NQRPPYNL+KPFG +D+R++VALPYPEP  HFALV GTRS P L+CYSPGNID+EL++AA
Sbjct: 514 NQRPPYNLIKPFGMRDRRAKVALPYPEPLIHFALVFGTRSGPPLKCYSPGNIDQELVEAA 573

Query: 818 RSFLRGGGLVIDLHAKVATMSMVLKWYSVDFGKNEVEVLKHASNYLEPTASEALLEALAN 877
           R+F+R GGL++D++AKV + S +LKWYSVDFGKNEVEVLKHA+NYLEP  SE LLE LA 
Sbjct: 574 RNFVRSGGLILDVNAKVVSASKLLKWYSVDFGKNEVEVLKHAANYLEPPISEELLEVLAT 633

Query: 878 SQLKVTYQPYDWGLN 892
            QLKV YQPYDWGLN
Sbjct: 634 GQLKVIYQPYDWGLN 648

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442078|ref|XP_004138809.1| PREDICTED: uncharacterized protein LOC101216716 [Cucumis sativus]

 Score =  949 bits (2454), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/671 (68%), Positives = 549/671 (81%), Gaps = 18/671 (2%)

Query: 237 DIESKGAGEKLDCKNERGESR---DADRVIVAG---------VLDSTAQVERDQ---ETI 281
           D +SK  GEK D     G+S    D D+ + +          V+ S AQ+  +Q   E I
Sbjct: 85  DFQSKSEGEKSDQIISNGDSNEKLDEDKNVESESSSDDSDNDVVGSKAQIGSNQPTGEVI 144

Query: 282 GEEEREPEPVFDGTEVPGMEANRSTSTRSLELDLEAEGSVWPEKAAALKNFVKEKGSGAV 341
           GEE + PEPVFDGTEVPG+E + S S RS++ D E++G V  ++A ALKNFVKEKG  AV
Sbjct: 145 GEE-KSPEPVFDGTEVPGIEGSGSLSNRSMDSDTESQGVV--DRALALKNFVKEKGVVAV 201

Query: 342 ANVMRRLSGKKDETGQDVSIDEDNVASDSGKDSEAVEASKRMAERYSWNPLNYIKMSSDV 401
           + V+RR SGKKDE   D   +E    S S K++EA E  ++  +R +WNPLNYIK++ D 
Sbjct: 202 STVLRRFSGKKDEESPDTPSEETKDDSGSNKENEAKEIPEKPLDRSNWNPLNYIKITRDA 261

Query: 402 DSENRTEQRQEVVKEPPQPLVMKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP 461
           D++ +TEQ ++V  +    +V+KGR++LYTRLGCQE +E RLFL+WKRL YVEINIDVYP
Sbjct: 262 DAQIKTEQFEDVTGDSIFDIVIKGRIVLYTRLGCQECKEARLFLFWKRLGYVEINIDVYP 321

Query: 462 SRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDEKIEYLITEAPPFEAPLPP 521
           SRK+ELEK AGS AVP++FFN +L+GGL+ELK LDESGKLDEKIEYL  EAP  EAPLPP
Sbjct: 322 SRKLELEKLAGSPAVPRIFFNTVLIGGLNELKELDESGKLDEKIEYLKAEAPTLEAPLPP 381

Query: 522 LSGEDDLSSSGAIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSEDQYLER 581
           LSGEDD+SSSG +DELA+IV KMKE++VVKDR+ KMRRFTNCFLGSEAV+FLSEDQYLER
Sbjct: 382 LSGEDDVSSSGTVDELAMIVRKMKESIVVKDRYCKMRRFTNCFLGSEAVDFLSEDQYLER 441

Query: 582 EEAVEFGRKLASKLFFRHVLDENLFEDGNHLYRFLDHDPLVSSQCHNIPRGIIDAKPKPI 641
           EEA+EFGRKLASKLFF+HVL+ENLFEDG+HLYRFLD DP+V++QCHN+ RGII+ KPKPI
Sbjct: 442 EEAIEFGRKLASKLFFQHVLEENLFEDGSHLYRFLDDDPVVATQCHNVARGIIEVKPKPI 501

Query: 642 SEIALRLRFLSYAIFEAYLSEDGRHVDYRTIHGSEEFARYLRTVQELQRVELQDMPREEM 701
           ++IA RLRFLS+AI EAY+SEDG+HVDYR+IHGSEEFARYLR V+ELQRVE+ ++ REE 
Sbjct: 502 TDIASRLRFLSFAILEAYVSEDGKHVDYRSIHGSEEFARYLRIVEELQRVEVHNLAREEK 561

Query: 702 LAFFINLYNMMAIHAILVCGHPIGALERRKFFGDFKYVIGGYTYSLSAIQNGILRGNQRP 761
           +AFFINLYNMMAIHAILVCGHP+GA+ERRK FGDFKYVIGG TYSLSAIQNGILRGNQRP
Sbjct: 562 IAFFINLYNMMAIHAILVCGHPVGAMERRKLFGDFKYVIGGATYSLSAIQNGILRGNQRP 621

Query: 762 PYNLMKPFGAKDKRSQVALPYPEPSTHFALVCGTRSSPALRCYSPGNIDKELMKAARSFL 821
           PYNLMKPFGA+DKRS+ +LPY EP  HFALVCGTRS PALRCYSPGNID EL++AARSFL
Sbjct: 622 PYNLMKPFGARDKRSKASLPYVEPLIHFALVCGTRSGPALRCYSPGNIDHELVEAARSFL 681

Query: 822 RGGGLVIDLHAKVATMSMVLKWYSVDFGKNEVEVLKHASNYLEPTASEALLEALANSQLK 881
           R GGLV+DL+    +++M+LKW+S DFGKNE E +KHASNYL+P  S+ LLE LA+SQLK
Sbjct: 682 REGGLVMDLNNNATSVNMILKWFSTDFGKNEQEAMKHASNYLKPDDSQTLLELLASSQLK 741

Query: 882 VTYQPYDWGLN 892
           V YQPYDWGLN
Sbjct: 742 VLYQPYDWGLN 752

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449490220|ref|XP_004158541.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101216716 [Cucumis sativus]

 Score =  946 bits (2446), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/671 (68%), Positives = 548/671 (81%), Gaps = 18/671 (2%)

Query: 237 DIESKGAGEKLDCKNERGESR---DADRVIVAG---------VLDSTAQVERDQ---ETI 281
           D +SK  GEK D     G+S    D D+ + +          V+ S AQ+  +Q   E I
Sbjct: 85  DFQSKSEGEKSDQIISNGDSNEKLDEDKNVESESSSDDSDNDVVGSKAQIGSNQPTGEVI 144

Query: 282 GEEEREPEPVFDGTEVPGMEANRSTSTRSLELDLEAEGSVWPEKAAALKNFVKEKGSGAV 341
           GEE + PEPVFDGTEVPG+E + S S RS++ D E++G V  ++A ALKNFVKEKG  AV
Sbjct: 145 GEE-KSPEPVFDGTEVPGIEGSGSLSNRSMDSDTESQGVV--DRALALKNFVKEKGVVAV 201

Query: 342 ANVMRRLSGKKDETGQDVSIDEDNVASDSGKDSEAVEASKRMAERYSWNPLNYIKMSSDV 401
           + V+RR SGKKDE   D   +E    S S K++EA E  ++  +R +WNPLNYIK++ D 
Sbjct: 202 STVLRRFSGKKDEESPDTPSEETKDDSGSNKENEAKEIPEKPLDRSNWNPLNYIKITRDA 261

Query: 402 DSENRTEQRQEVVKEPPQPLVMKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP 461
           D++ +TEQ ++V  +    +V+KGR++LYTRLGCQE +E RLFL+WKRL YVEINIDVYP
Sbjct: 262 DAQIKTEQFEDVTGDSIFDIVIKGRIVLYTRLGCQECKEARLFLFWKRLGYVEINIDVYP 321

Query: 462 SRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDEKIEYLITEAPPFEAPLPP 521
           SRK+ELEK AGS AVP++ FN +L+GGL+ELK LDESGKLDEKIEYL  EAP  EAPLPP
Sbjct: 322 SRKLELEKLAGSPAVPRIXFNTVLIGGLNELKELDESGKLDEKIEYLKAEAPTLEAPLPP 381

Query: 522 LSGEDDLSSSGAIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSEDQYLER 581
           LSGEDD+SSSG +DELA+IV KMKE++VVKDR+ KMRRFTNCFLGSEAV+FLSEDQYLER
Sbjct: 382 LSGEDDVSSSGTVDELAMIVRKMKESIVVKDRYCKMRRFTNCFLGSEAVDFLSEDQYLER 441

Query: 582 EEAVEFGRKLASKLFFRHVLDENLFEDGNHLYRFLDHDPLVSSQCHNIPRGIIDAKPKPI 641
           EEA+EFGRKLASKLFF+HVL+ENLFEDG+HLYRFLD DP+V++QCHN+ RGII+ KPKPI
Sbjct: 442 EEAIEFGRKLASKLFFQHVLEENLFEDGSHLYRFLDDDPVVATQCHNVARGIIEVKPKPI 501

Query: 642 SEIALRLRFLSYAIFEAYLSEDGRHVDYRTIHGSEEFARYLRTVQELQRVELQDMPREEM 701
           ++IA RLRFLS+AI EAY+SEDG+HVDYR+IHGSEEFARYLR V+ELQRVE+ ++ REE 
Sbjct: 502 TDIASRLRFLSFAILEAYVSEDGKHVDYRSIHGSEEFARYLRIVEELQRVEVHNLAREEK 561

Query: 702 LAFFINLYNMMAIHAILVCGHPIGALERRKFFGDFKYVIGGYTYSLSAIQNGILRGNQRP 761
           +AFFINLYNMMAIHAILVCGHP+GA+ERRK FGDFKYVIGG TYSLSAIQNGILRGNQRP
Sbjct: 562 IAFFINLYNMMAIHAILVCGHPVGAMERRKLFGDFKYVIGGATYSLSAIQNGILRGNQRP 621

Query: 762 PYNLMKPFGAKDKRSQVALPYPEPSTHFALVCGTRSSPALRCYSPGNIDKELMKAARSFL 821
           PYNLMKPFGA+DKRS+ +LPY EP  HFALVCGTRS PALRCYSPGNID EL++AARSFL
Sbjct: 622 PYNLMKPFGARDKRSKASLPYVEPLIHFALVCGTRSGPALRCYSPGNIDHELVEAARSFL 681

Query: 822 RGGGLVIDLHAKVATMSMVLKWYSVDFGKNEVEVLKHASNYLEPTASEALLEALANSQLK 881
           R GGLV+DL+    +++M+LKW+S DFGKNE E +KHASNYL+P  S+ LLE LA+SQLK
Sbjct: 682 REGGLVMDLNNNATSVNMILKWFSTDFGKNEQEAMKHASNYLKPDDSQTLLELLASSQLK 741

Query: 882 VTYQPYDWGLN 892
           V YQPYDWGLN
Sbjct: 742 VLYQPYDWGLN 752

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545592|ref|XP_002513856.1| electron transporter, putative [Ricinus communis] gi|223546942|gb|EEF48439.1| electron transporter, putative [Ricinus communis]

 Score =  937 bits (2423), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/723 (65%), Positives = 563/723 (77%), Gaps = 34/723 (4%)

Query: 179 ENKDLEYKAAEGVEMGMMDESKDLESKAVECIDLSKMSKDFKSKATEC-VDLGHIDESRD 237
           E  D ++ AAE V+   +  SK    K  + +   +MS  + ++  E   + G +++  D
Sbjct: 35  ETDDEKFTAAENVDNISISGSKFQGDKLGDFVKHDEMS--YGNRVIESKFEEGKLND--D 90

Query: 238 IESKGAGEKLD------CKNERGESRDADRVIVAGVLDSTAQVERDQETIGEEEREPEPV 291
           I+  G G+KLD      CK + G+++    ++                   +EE++P  +
Sbjct: 91  IQQVGLGDKLDEGINSDCKPDEGKTQTTGEILGH-----------------KEEQKPNEM 133

Query: 292 FDGTEVPGMEANRS-TSTRSLELDLEAEGSVWPEKAAALKNFVKEKGSGAVANVMRRLSG 350
               EVPG EANR+ TS +S +   E EGS+WPEKA   ++FVK KG+ AV + +R LSG
Sbjct: 134 ----EVPGEEANRTVTSLQSTDAGPETEGSMWPEKAMVFRDFVKNKGAVAVTSFLRILSG 189

Query: 351 KKDETGQDVSIDEDNVASDSGKDSEAVEASKRMAERYSWNPLNYIKMSSDVDSENRTEQR 410
           ++D   Q   +DE+  ASDS KD EA E S++  +R +WNPL+YI  S + D+ENR E  
Sbjct: 190 RRDGVEQ-FPVDEEKEASDSAKDREAAEVSQKPEDRSAWNPLSYIMTSRNSDTENRAEHG 248

Query: 411 QEVVKEPPQPLVMKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKF 470
            E ++E  +P+VMKGR+ILYTRLGCQ  +EVRLFLY KRLRYVEINIDVYPSRK+ELEKF
Sbjct: 249 VETIEELREPVVMKGRIILYTRLGCQNCKEVRLFLYNKRLRYVEINIDVYPSRKLELEKF 308

Query: 471 AGSSAVPKVFFNEILMGGLSELKALDESGKLDEKIEYLITEAPPFEAPLPPLSGEDDLSS 530
            GSSAVPK+FFNE+++GGLSEL  LDESGKL+EKI+YLITE P +EAPLPPLSGEDD+S+
Sbjct: 309 TGSSAVPKLFFNEVVIGGLSELMGLDESGKLEEKIDYLITEPPAYEAPLPPLSGEDDVST 368

Query: 531 SGAIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSEDQYLEREEAVEFGRK 590
           SG+ DELALIV KMKE++VVKDRFYKMRRF +CFLGS+AV+FLSEDQYLER +A+EFGRK
Sbjct: 369 SGSFDELALIVRKMKESIVVKDRFYKMRRFGSCFLGSDAVDFLSEDQYLERVDAIEFGRK 428

Query: 591 LASKLFFRHVLDENLFEDGNHLYRFLDHDPLVSSQCHNIPRGIIDAKPKPISEIALRLRF 650
           LASKLFFRHVLDENLFEDGNHLY FLD DP VSSQCHNIPRGII+AKPKPI+EIA RLRF
Sbjct: 429 LASKLFFRHVLDENLFEDGNHLYWFLDDDPTVSSQCHNIPRGIIEAKPKPITEIASRLRF 488

Query: 651 LSYAIFEAYLSEDGRHVDYRTIHGSEEFARYLRTVQELQRVELQDMPREEMLAFFINLYN 710
           L YAI EAY SEDG+H+DYRTIHGSEEF RYLR +QELQRVE QD+PREE L+FFINLYN
Sbjct: 489 LFYAISEAYTSEDGKHIDYRTIHGSEEFHRYLRIIQELQRVEFQDIPREEKLSFFINLYN 548

Query: 711 MMAIHAILVCGHPIGALERRKFFGDFKYVIGGYTYSLSAIQNGILRGNQRPPYNLMKPFG 770
           MM IHAILV GHP GALER+KFFGDFKYVIGG +YSLSAIQNGILRGNQRPPY LMKPF 
Sbjct: 549 MMVIHAILVLGHPDGALERKKFFGDFKYVIGGCSYSLSAIQNGILRGNQRPPYGLMKPFS 608

Query: 771 AKDKRSQVALPYPEPSTHFALVCGTRSSPALRCYSPGNIDKELMKAARSFLRGGGLVIDL 830
             DKR +V+LPY EP  HFALV GTRS PAL+CYSPGN+DKELM AAR+FLRGGGLV+++
Sbjct: 609 GNDKRCKVSLPYTEPLVHFALVNGTRSGPALQCYSPGNVDKELMDAARNFLRGGGLVVNV 668

Query: 831 HAKVATMSMVLKWYSVDFGKNEVEVLKHASNYLEPTASEALLEALANSQLKVTYQPYDWG 890
           +AKVA +S +LKW+S+DFGKNEVEVLKHASNYLEP  SEALLE LA  QLKV YQPYDWG
Sbjct: 669 NAKVAYVSKILKWFSMDFGKNEVEVLKHASNYLEPANSEALLELLAQGQLKVQYQPYDWG 728

Query: 891 LNI 893
           LN+
Sbjct: 729 LNL 731

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141902|emb|CBI19105.3| unnamed protein product [Vitis vinifera]

 Score =  917 bits (2370), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/593 (74%), Positives = 509/593 (85%), Gaps = 15/593 (2%)

Query: 300 MEANRSTSTRSLELDLEAEGSVWPEKAAALKNFVKEKGSGAVANVMRRLSGKKDETGQDV 359
           MEA+RS STR L+LD E +GS WPEKA ALKNFVKEKG+ AV++V+R LSGK +E     
Sbjct: 1   MEASRSMSTRPLDLDTETQGSAWPEKAVALKNFVKEKGTVAVSSVLRVLSGKTEEDVHAA 60

Query: 360 SIDEDNVASDSGKDSEAVEASKRMAERYSWNPLNYIKMSSDVDSENRTEQRQEVVKEPPQ 419
             DED                 +  ER +WNPLNYIK+S +VD+EN+TEQ++E+++EP +
Sbjct: 61  QDDEDK---------------NKTVERSAWNPLNYIKISREVDAENKTEQKEEIIEEPAR 105

Query: 420 PLVMKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKV 479
           P+ MKGR+ILYTRLGCQES+EVR FL  +RLRYVEINIDVYPSRK+ELEK AGS AVPK+
Sbjct: 106 PVGMKGRIILYTRLGCQESKEVRRFLLQRRLRYVEINIDVYPSRKLELEKIAGSCAVPKL 165

Query: 480 FFNEILMGGLSELKALDESGKLDEKIEYLITEAPPFEAPLPPLSGEDDLSSSGAIDELAL 539
           FFNE+L+GGL+E+K LDESGKLDEKI Y+I+EAP FEAPLPPLSGEDDLSSSGAIDELA 
Sbjct: 166 FFNEVLIGGLNEVKGLDESGKLDEKINYVISEAPSFEAPLPPLSGEDDLSSSGAIDELAA 225

Query: 540 IVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSEDQYLEREEAVEFGRKLASKLFFRH 599
           IVLKMKE++VVKDRFY+MRRFTNCFLGSEAV+F+SEDQYLEREEA+EFGRKLASK FF++
Sbjct: 226 IVLKMKESIVVKDRFYRMRRFTNCFLGSEAVDFISEDQYLEREEAIEFGRKLASKHFFQN 285

Query: 600 VLDENLFEDGNHLYRFLDHDPLVSSQCHNIPRGIIDAKPKPISEIALRLRFLSYAIFEAY 659
           VLDEN FEDGNHLYRFLDHDP+VSSQCHN  RGI+D KPKPI EIA RLRFLSYAIFEAY
Sbjct: 286 VLDENDFEDGNHLYRFLDHDPVVSSQCHNFLRGILDVKPKPIIEIASRLRFLSYAIFEAY 345

Query: 660 LSEDGRHVDYRTIHGSEEFARYLRTVQELQRVELQDMPREEMLAFFINLYNMMAIHAILV 719
            SEDG+HVDYR+IHGSEEFARYLR V+ELQRV+LQDMPREE LAFFINLYNMMAIH ILV
Sbjct: 346 TSEDGKHVDYRSIHGSEEFARYLRIVEELQRVDLQDMPREEKLAFFINLYNMMAIHGILV 405

Query: 720 CGHPIGALERRKFFGDFKYVIGGYTYSLSAIQNGILRGNQRPPYNLMKPFGAKDKRSQVA 779
            G P+G LERRK  G+FKYV+GG TYSLS I NGILRGNQRPPYNL+KPFG +D+R++VA
Sbjct: 406 WGFPVGPLERRKLLGEFKYVVGGCTYSLSVIANGILRGNQRPPYNLIKPFGMRDRRAKVA 465

Query: 780 LPYPEPSTHFALVCGTRSSPALRCYSPGNIDKELMKAARSFLRGGGLVIDLHAKVATMSM 839
           LPYPEP  HFALV GTRS P L+CYSPGNID+EL++AAR+F+R GGL++D++AKV + S 
Sbjct: 466 LPYPEPLIHFALVFGTRSGPPLKCYSPGNIDQELVEAARNFVRSGGLILDVNAKVVSASK 525

Query: 840 VLKWYSVDFGKNEVEVLKHASNYLEPTASEALLEALANSQLKVTYQPYDWGLN 892
           +LKWYSVDFGKNEVEVLKHA+NYLEP  SE LLE LA  QLKV YQPYDWGLN
Sbjct: 526 LLKWYSVDFGKNEVEVLKHAANYLEPPISEELLEVLATGQLKVIYQPYDWGLN 578

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518503|ref|XP_003527918.1| PREDICTED: uncharacterized protein LOC100820242 [Glycine max]

 Score =  890 bits (2301), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/756 (61%), Positives = 549/756 (72%), Gaps = 54/756 (7%)

Query: 166 FKAAECLDVGKINENKDLEYKAAEGVEMGMMDESKDLESKAVECIDLSKMSKDFKSKATE 225
           F+A E L V  +  ++D + K A+  ++G  D+  D         D+S    D +   + 
Sbjct: 14  FQAVENLRVDDLELDQDKQSKEAKAEKIGHEDDKLD---------DISDQINDGEDARSN 64

Query: 226 CVDLGHIDESRDIESKGAGEKLDCKNERGESRD-----ADRVIVAGVL----------DS 270
             D     ES +++S    E L+ K+E   S D      D++   G L          ++
Sbjct: 65  TKD-----ESGNLQSGTQPENLETKSETEVSTDKREYSGDKMGAGGDLEPKNQETNIDNN 119

Query: 271 TAQVERDQET--------------IGEEEREPEPVFDGTEVPGMEANRSTSTRSLELDLE 316
           + Q++  +E               I  E+   EPVFDGTEVPGMEANRS S R L  D +
Sbjct: 120 SGQIDLAKEVADRESTQIFDKSDEIPSEDHNLEPVFDGTEVPGMEANRSMSGRRLN-DQD 178

Query: 317 AEGSVWPEKAAALKNFVKEKGSGAVANVMRRLSGKKDETGQDVSIDEDNVASDSGKDSEA 376
           + G V  EKA ALKNFVKEK + AV+ +MRRLSGK+DE  +D + DE    SD  K  E 
Sbjct: 179 SPGVV--EKAVALKNFVKEKSAVAVSTMMRRLSGKRDEGTEDNADDEGKDVSDIPKVGET 236

Query: 377 VEASKRMAERYSWNPLNYIKMSSDVDSENRTEQRQEVVKEPPQPLVMKGRVILYTRLGCQ 436
              S +  E++ WNPL+YIK SSDV  EN+TEQ   +         MKGR+ILYT+LGCQ
Sbjct: 237 KVVSDKAVEKFDWNPLHYIKKSSDVGVENKTEQGDSIA--------MKGRIILYTKLGCQ 288

Query: 437 ESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD 496
           ES+ +RLFL  KRLRYVEINIDV+P RK+ELEK +GS++VPKVFFNEIL+GG +ELK LD
Sbjct: 289 ESKAIRLFLRMKRLRYVEINIDVFPGRKVELEKISGSASVPKVFFNEILIGGWNELKNLD 348

Query: 497 ESGKLDEKIEYLITEAPPFEAPLPPLSGEDDLSSSGAIDELALIVLKMKENVVVKDRFYK 556
           ESGKLDEK+++LITEAP FEAP PPLSGEDD+SSSG +DELA+IV KMKE++ VKDR YK
Sbjct: 349 ESGKLDEKVDFLITEAPLFEAPSPPLSGEDDVSSSGPLDELAIIVRKMKESIAVKDRLYK 408

Query: 557 MRRFTNCFLGSEAVNFLSEDQYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYRFL 616
           MRRFTN FL SEA++FLSEDQYLER EAVEF +KLA KLFF++VLDE++FEDGNHLYRFL
Sbjct: 409 MRRFTNSFLSSEAIDFLSEDQYLERPEAVEFAQKLADKLFFQNVLDEDIFEDGNHLYRFL 468

Query: 617 DHDPLVSSQCHNIPRGIIDAKPKPISEIALRLRFLSYAIFEAYLSEDGRHVDYRTIHGSE 676
           D DP V SQCHNI RGII  K KP++EIA RLRFLS A+FEAY+ EDGR +DY +IHGSE
Sbjct: 469 DDDPTVVSQCHNITRGIITLKLKPLAEIASRLRFLSRAMFEAYVYEDGRRIDYTSIHGSE 528

Query: 677 EFARYLRTVQELQRVELQDMPREEMLAFFINLYNMMAIHAILVCGHPIGALERRKFFGDF 736
           EFARYLR V+ELQRVE+ D  REE LAFFINLYNMMAIHAILV GHP GALERRK FG+F
Sbjct: 529 EFARYLRIVEELQRVEISDSSREEKLAFFINLYNMMAIHAILVLGHPDGALERRKLFGEF 588

Query: 737 KYVIGGYTYSLSAIQNGILRGNQRPPYNLMKPFGAKDKRSQVALPYPEPSTHFALVCGTR 796
           KYVIGG TYSLSAIQNGILRGNQRPPYNL KPFG KDKR  VALPYPEP  HFALV GTR
Sbjct: 589 KYVIGGSTYSLSAIQNGILRGNQRPPYNLKKPFGVKDKRLTVALPYPEPLIHFALVYGTR 648

Query: 797 SSPALRCYSPGNIDKELMKAARSFLRGGGLVIDLHAKVATMSMVLKWYSVDFGKNEVEVL 856
           S PALRCYSPGNID+EL+ AAR+FLR GG+ +DL AK    S +LKWYS+DFGKNEVEV+
Sbjct: 649 SGPALRCYSPGNIDEELLDAARNFLRNGGIAVDLTAKAVNASKILKWYSIDFGKNEVEVI 708

Query: 857 KHASNYLEPTASEALLEALANSQLKVTYQPYDWGLN 892
           KH SNYL+   SE LL+ LA S+LKVTYQPYDWGLN
Sbjct: 709 KHVSNYLDSADSEVLLDLLATSELKVTYQPYDWGLN 744

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242095204|ref|XP_002438092.1| hypothetical protein SORBIDRAFT_10g007910 [Sorghum bicolor] gi|241916315|gb|EER89459.1| hypothetical protein SORBIDRAFT_10g007910 [Sorghum bicolor]

 Score =  852 bits (2200), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/684 (61%), Positives = 520/684 (76%), Gaps = 13/684 (1%)

Query: 221 SKATECVDLGHIDESRDI---ESKGAGEKLDCKNERGESRDADRVIVAGVLDSTAQVERD 277
           S+ TE +++   + S D    ES+   ++ D  +E+G +   +    + VL+  +  E  
Sbjct: 31  SRKTEMLNVEAPNSSNDKLNNESEVQIQEGDDDSEKGLNGQMNERTSSDVLEYASSNEIT 90

Query: 278 QETIGEEEREPEPVFDGTEVPGMEANRSTSTRSLELDLEAEGSVWPEKAAALKNFVKEKG 337
           +E + E++ E EPVFDGTEVP +E  R +S +S+ELD EA+GSV  ++A A+KNFVKEK 
Sbjct: 91  KEILPEDKSE-EPVFDGTEVPEIEEMRRSSNQSVELDSEAQGSVLNDRAVAIKNFVKEKS 149

Query: 338 SGAVANVMRRLSGKKDETGQDVSIDEDNVASD------SGKDSEAV--EASKRMAERYSW 389
           + AV+  MRRLSGKKDE       D+  V S+      +G D E+   E  ++  ER +W
Sbjct: 150 AIAVSTFMRRLSGKKDENEFKAEADK-TVGSECMDCEKTGTDDESKPKEVQQKSEERTAW 208

Query: 390 NPLNYIKMSSDVDSENRTEQRQEVVKEPPQPLVMKGRVILYTRLGCQESREVRLFLYWKR 449
           NPLN+IK+  D D+    E   E V    +P  +K R+I+YT+LGC++ + VRLFL+ KR
Sbjct: 209 NPLNFIKIGRDFDTFVTGEALNENVPGLLEPPTLKSRIIIYTKLGCEDCKMVRLFLHQKR 268

Query: 450 LRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDEKIEYLI 509
           L+YVEINID++P RK+ELEK  GSS VPKV+FN++L+GGL ELK +++SG LDE I  L 
Sbjct: 269 LKYVEINIDIFPGRKLELEKNTGSSTVPKVYFNDLLIGGLIELKKMEDSGILDENIGVLF 328

Query: 510 TEAPPFEAPLPPLSGEDDLSSSGAIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEA 569
            E P   APLPPL GEDD S SG IDELA IV KM+E++  KDRFYKMRRF+NCFLGSEA
Sbjct: 329 NEEPSSSAPLPPLPGEDDESGSGKIDELATIVRKMRESITPKDRFYKMRRFSNCFLGSEA 388

Query: 570 VNFLSEDQYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYRFLDHDPLVSSQCHNI 629
           V+F+SEDQYLER+EAVEFGRKLA K FFRHVL EN+FEDGN+LYRFLDHDP+V +QC+NI
Sbjct: 389 VDFISEDQYLERDEAVEFGRKLARKYFFRHVLGENVFEDGNNLYRFLDHDPIVMTQCYNI 448

Query: 630 PRGIIDAKPKPISEIALRLRFLSYAIFEAYLSEDGRHVDYRTIHGSEEFARYLRTVQELQ 689
           PRGI+D  PKPI+E+A RLR LS AIFEAY+S DGRHVDYR+I GSEEF RY+RTV+ELQ
Sbjct: 449 PRGIMDVAPKPIAEVASRLRLLSCAIFEAYVSADGRHVDYRSIQGSEEFKRYIRTVEELQ 508

Query: 690 RVELQDMPREEMLAFFINLYNMMAIHAILVCGHPIGALERRKFFGDFKYVIGGYTYSLSA 749
           RVE+ D+ REE LAFFINLYNMMAIHA++ CGHP G L+RR FFG FKYVIGG  YSLSA
Sbjct: 509 RVEIDDLSREEKLAFFINLYNMMAIHALVTCGHPAGPLDRRNFFGGFKYVIGGCAYSLSA 568

Query: 750 IQNGILRGNQRPPYNLMKPFGAKDKRSQVALPYPEPSTHFALVCGTRSSPALRCYSPGNI 809
           IQNGILRGNQRPPYN+ KPFG KD+RS+VALPY EP  HFALVCGT+S PALRCYSPG+I
Sbjct: 569 IQNGILRGNQRPPYNITKPFGQKDQRSKVALPYHEPLVHFALVCGTKSGPALRCYSPGDI 628

Query: 810 DKELMKAARSFLRGGGLVIDLHAKVATMSMVLKWYSVDFGKNEVEVLKHASNYLEPTASE 869
           DKELM+AAR FLR GGL++D  AK+A+ S +LKWYS DFGKNE EVLKHA+NYL P  SE
Sbjct: 629 DKELMEAARDFLRNGGLIVDPEAKIASASKILKWYSTDFGKNETEVLKHAANYLAPAESE 688

Query: 870 ALLEALANSQLKVTYQPYDWGLNI 893
            LLE LA++QLKV YQ YDW +NI
Sbjct: 689 QLLELLASTQLKVMYQNYDWSINI 712

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222635231|gb|EEE65363.1| hypothetical protein OsJ_20649 [Oryza sativa Japonica Group]

 Score =  849 bits (2193), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/624 (65%), Positives = 493/624 (79%), Gaps = 9/624 (1%)

Query: 278 QETIGEEEREPEPVFDGTEVPGMEANRSTSTRSLELDLEAEGSVWPEKAAALKNFVKEKG 337
           +E I  E++  EPVFDGTEV  ME  R +S +S+ELD +A GSV  E+A A+KNFVKEKG
Sbjct: 89  EEDILAEDKSEEPVFDGTEVAEMEDLRRSSNQSVELDSDAHGSVLNERATAIKNFVKEKG 148

Query: 338 SGAVANVMRRLSGKKDETGQDVSIDEDNVASDS------GKDSE--AVEASKRMAERYSW 389
           + AV+  +RRLSGKKDE    V  DE N  S+S      G D+E  + E   +  ER +W
Sbjct: 149 AIAVSTFIRRLSGKKDENEFSVE-DEKNEGSESISSGNIGSDAEPKSKEVQPKSEERTTW 207

Query: 390 NPLNYIKMSSDVDSENRTEQRQEVVKEPPQPLVMKGRVILYTRLGCQESREVRLFLYWKR 449
           NPLN IK+  D D+    E   E V +  +    KGR+I+YT+LGC++ + VR F+  K 
Sbjct: 208 NPLNLIKIGRDFDTFMTGEAGHENVPDLIEQPTGKGRIIIYTKLGCEDCKMVRSFMRQKM 267

Query: 450 LRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDEKIEYLI 509
           L+YVEINID++PSRKMELE   GSS VPKV+FN++L+GGL+ELK ++ESG LD++ + L 
Sbjct: 268 LKYVEINIDIFPSRKMELENNTGSSTVPKVYFNDLLIGGLTELKKMEESGILDDRTDALF 327

Query: 510 TEAPPFEAPLPPLSGEDDLSSSGAIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEA 569
            + P   APLPPL GEDD S SG IDELA IV KM+E++ +KDRFYKMRRF++CFLGSEA
Sbjct: 328 KDEPSSAAPLPPLPGEDDESGSGKIDELATIVRKMRESITLKDRFYKMRRFSSCFLGSEA 387

Query: 570 VNFLSEDQYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYRFLDHDPLVSSQCHNI 629
           V+FLSEDQYLER+EAVEFGRKLASK F+RHVLDE++FEDGNHLYRFLD+DP++ SQC+NI
Sbjct: 388 VDFLSEDQYLERDEAVEFGRKLASKYFYRHVLDEDVFEDGNHLYRFLDNDPIIMSQCYNI 447

Query: 630 PRGIIDAKPKPISEIALRLRFLSYAIFEAYLSEDGRHVDYRTIHGSEEFARYLRTVQELQ 689
           P+GIID +PKPI E+A RLR LS  +FEAY+SEDG+HVDYR+I G EEF RY+RT +ELQ
Sbjct: 448 PKGIIDVEPKPIVEVASRLRKLSETMFEAYVSEDGKHVDYRSIQGCEEFKRYVRTTEELQ 507

Query: 690 RVELQDMPREEMLAFFINLYNMMAIHAILVCGHPIGALERRKFFGDFKYVIGGYTYSLSA 749
           RVE  ++ REE LAFFINLYNMMAIHA++ CGHP G L+RRKFFGDFKYVIGG  YS+SA
Sbjct: 508 RVETHELSREEKLAFFINLYNMMAIHALVTCGHPAGPLDRRKFFGDFKYVIGGCAYSMSA 567

Query: 750 IQNGILRGNQRPPYNLMKPFGAKDKRSQVALPYPEPSTHFALVCGTRSSPALRCYSPGNI 809
           IQNGILRGNQRPPYNL KPFG KD+RS+VALPY EP  HFALVCGT+S PALRCYSPGNI
Sbjct: 568 IQNGILRGNQRPPYNLAKPFGQKDQRSKVALPYAEPLVHFALVCGTKSGPALRCYSPGNI 627

Query: 810 DKELMKAARSFLRGGGLVIDLHAKVATMSMVLKWYSVDFGKNEVEVLKHASNYLEPTASE 869
           DKEL++AAR FLR GG+V+D  AKVA++S +L+WYS DFGKNE EVLKHA+NYLEP  SE
Sbjct: 628 DKELVEAARDFLRNGGIVVDPEAKVASVSKILRWYSTDFGKNETEVLKHAANYLEPAESE 687

Query: 870 ALLEALANSQLKVTYQPYDWGLNI 893
             LE LAN+QLKV YQPYDW LNI
Sbjct: 688 QFLELLANTQLKVLYQPYDWSLNI 711

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115467176|ref|NP_001057187.1| Os06g0224200 [Oryza sativa Japonica Group] gi|51536062|dbj|BAD38188.1| glutaredoxin-related-like protein [Oryza sativa Japonica Group] gi|113595227|dbj|BAF19101.1| Os06g0224200 [Oryza sativa Japonica Group] gi|215695506|dbj|BAG90697.1| unnamed protein product [Oryza sativa Japonica Group] gi|218197827|gb|EEC80254.1| hypothetical protein OsI_22215 [Oryza sativa Indica Group]

 Score =  845 bits (2182), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/624 (65%), Positives = 492/624 (78%), Gaps = 9/624 (1%)

Query: 278 QETIGEEEREPEPVFDGTEVPGMEANRSTSTRSLELDLEAEGSVWPEKAAALKNFVKEKG 337
           +E I  E++  EPVFDGTEV  ME  R +S +S+ELD +A GSV  E+A A+KNFVKEKG
Sbjct: 89  EEDILAEDKSEEPVFDGTEVAEMEDLRRSSNQSVELDSDAHGSVLNERATAIKNFVKEKG 148

Query: 338 SGAVANVMRRLSGKKDETGQDVSIDEDNVASDS------GKDSE--AVEASKRMAERYSW 389
           + AV+  +RRLSGKKDE    V  DE N  S+S      G D+E  + E   +  ER +W
Sbjct: 149 AIAVSTFIRRLSGKKDENEFSVE-DEKNEGSESISSGNIGSDAEPKSKEVQPKSEERTTW 207

Query: 390 NPLNYIKMSSDVDSENRTEQRQEVVKEPPQPLVMKGRVILYTRLGCQESREVRLFLYWKR 449
           NPLN IK+  D D+    E   E V +  +    KGR+I+YT+LGC++ + VR F+  K 
Sbjct: 208 NPLNLIKIGRDFDTFMTGEAGHENVPDLIEQPTGKGRIIIYTKLGCEDCKMVRSFMRQKM 267

Query: 450 LRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDEKIEYLI 509
           L+YVEINID++PSRKMELE   GSS VPKV+FN++L+GGL+ELK ++ESG LD++ + L 
Sbjct: 268 LKYVEINIDIFPSRKMELENNTGSSTVPKVYFNDLLIGGLTELKKMEESGILDDRTDALF 327

Query: 510 TEAPPFEAPLPPLSGEDDLSSSGAIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEA 569
            + P   APLPPL GEDD S SG IDELA IV KM+E++ +KDRFYKMRRF++CFLGSEA
Sbjct: 328 KDEPSSAAPLPPLPGEDDESGSGKIDELATIVRKMRESITLKDRFYKMRRFSSCFLGSEA 387

Query: 570 VNFLSEDQYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYRFLDHDPLVSSQCHNI 629
           V+FLSEDQYLER+EAVEFGRKLASK F+RHVLDE++FEDGNHLYRFLD+DP++ SQC+NI
Sbjct: 388 VDFLSEDQYLERDEAVEFGRKLASKYFYRHVLDEDVFEDGNHLYRFLDNDPIIMSQCYNI 447

Query: 630 PRGIIDAKPKPISEIALRLRFLSYAIFEAYLSEDGRHVDYRTIHGSEEFARYLRTVQELQ 689
           P+GIID +PKPI E+A RLR LS  +FEAY+SEDG+HVDYR+I G EEF RY+RT +ELQ
Sbjct: 448 PKGIIDVEPKPIVEVASRLRKLSETMFEAYVSEDGKHVDYRSIQGCEEFKRYVRTTEELQ 507

Query: 690 RVELQDMPREEMLAFFINLYNMMAIHAILVCGHPIGALERRKFFGDFKYVIGGYTYSLSA 749
           RVE  ++ REE LAFFINLYNMMAIHA++ CGHP G L+RRKFFGDFKYVIGG  YS+SA
Sbjct: 508 RVETHELSREEKLAFFINLYNMMAIHALVTCGHPAGPLDRRKFFGDFKYVIGGCAYSMSA 567

Query: 750 IQNGILRGNQRPPYNLMKPFGAKDKRSQVALPYPEPSTHFALVCGTRSSPALRCYSPGNI 809
           IQNGILRGNQRPPYNL KPFG KD+RS+VALPY EP  HFALVCGT+S PALRCYSPGNI
Sbjct: 568 IQNGILRGNQRPPYNLAKPFGQKDQRSKVALPYAEPLVHFALVCGTKSGPALRCYSPGNI 627

Query: 810 DKELMKAARSFLRGGGLVIDLHAKVATMSMVLKWYSVDFGKNEVEVLKHASNYLEPTASE 869
           DKEL++AAR FLR  G+V+D  AKVA++S +L+WYS DFGKNE EVLKHA+NYLEP  SE
Sbjct: 628 DKELVEAARDFLRNVGIVVDPEAKVASVSKILRWYSTDFGKNETEVLKHAANYLEPAESE 687

Query: 870 ALLEALANSQLKVTYQPYDWGLNI 893
             LE LAN+QLKV YQPYDW LNI
Sbjct: 688 QFLELLANTQLKVLYQPYDWSLNI 711

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413944121|gb|AFW76770.1| hypothetical protein ZEAMMB73_930395 [Zea mays]

 Score =  843 bits (2177), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/638 (63%), Positives = 499/638 (78%), Gaps = 16/638 (2%)

Query: 267 VLDSTAQVERDQETIGEEEREPEPVFDGTEVPGMEANRSTSTRSLELDLEAEGSVWPEKA 326
           V++  +  E  +E + E++ E EPVFDGTEV  +E  R +S +S ELD EA+GSV  ++A
Sbjct: 97  VMECASSNEITKENLSEDKTE-EPVFDGTEVLEIEEMRRSSNQSGELDSEAQGSVLNDRA 155

Query: 327 AALKNFVKEKGSGAVANVMRRLSGKKDETGQDVSIDE-------DNVASDSGKDSEAVEA 379
            A+KNFVKE+ + AV+  MRRLSGKKDE       D+       D   + +  +S   E 
Sbjct: 156 VAIKNFVKERSAIAVSTFMRRLSGKKDENEFKAEADKTIGSEYMDCEKTRTDAESNPKEV 215

Query: 380 SKRMAERYSWNPLNYIKMSSDVDS----ENRTEQRQEVVKEPPQPLVMKGRVILYTRLGC 435
            ++  ER  WNPLN+IK+  D D+    E   E    +++ PP    +KGR+I+YT+LGC
Sbjct: 216 QQKSVERTVWNPLNFIKIGRDSDTFVTGEALNENVPGLLEIPP----LKGRIIIYTKLGC 271

Query: 436 QESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKAL 495
           ++ ++VRLFL  KRL+YVEINID++P RK+ELEK  GSS VPKV+FN++L+GGL EL+ +
Sbjct: 272 EDCKKVRLFLLRKRLKYVEINIDIFPGRKLELEKNTGSSTVPKVYFNDLLIGGLIELRKM 331

Query: 496 DESGKLDEKIEYLITEAPPFEAPLPPLSGEDDLSSSGAIDELALIVLKMKENVVVKDRFY 555
           ++SG LDE I+ L  E  P+ APLPPL GEDD S SG IDELA IV KM+E++  KDRFY
Sbjct: 332 EDSGILDENIDVLFNEESPYSAPLPPLLGEDDESGSGKIDELATIVKKMRESITPKDRFY 391

Query: 556 KMRRFTNCFLGSEAVNFLSEDQYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYRF 615
           KMRRF+NCFLGSEAV+F+SEDQYLER+EAVEF RKLA K FFRHVLDEN+FEDGNH+YRF
Sbjct: 392 KMRRFSNCFLGSEAVDFISEDQYLERDEAVEFARKLARKYFFRHVLDENVFEDGNHIYRF 451

Query: 616 LDHDPLVSSQCHNIPRGIIDAKPKPISEIALRLRFLSYAIFEAYLSEDGRHVDYRTIHGS 675
           LDHDP+V +QC+NIPRGIID  PKPI+E+A RLR LS AIFEAY+S DGRHVDY++I GS
Sbjct: 452 LDHDPIVMTQCYNIPRGIIDVAPKPIAEVASRLRLLSCAIFEAYVSADGRHVDYQSIQGS 511

Query: 676 EEFARYLRTVQELQRVELQDMPREEMLAFFINLYNMMAIHAILVCGHPIGALERRKFFGD 735
           EEF RY+RTV+ELQRVE+  + REE LAFFINLYNMMAIHA++ CGHP G L+R+KFFGD
Sbjct: 512 EEFKRYIRTVEELQRVEIDYLSREEKLAFFINLYNMMAIHALVTCGHPAGPLDRKKFFGD 571

Query: 736 FKYVIGGYTYSLSAIQNGILRGNQRPPYNLMKPFGAKDKRSQVALPYPEPSTHFALVCGT 795
           FKY+IGG  YSLSAIQNGILRGNQRPPYN+ KPFG KD+RS+VALPY EP  HFAL+CGT
Sbjct: 572 FKYIIGGCAYSLSAIQNGILRGNQRPPYNIAKPFGQKDRRSKVALPYHEPLVHFALICGT 631

Query: 796 RSSPALRCYSPGNIDKELMKAARSFLRGGGLVIDLHAKVATMSMVLKWYSVDFGKNEVEV 855
           +S PALRCYSPG+IDKELM+AAR F+R GGL++D  AK+A+ S +LKWYS DFGKNE+EV
Sbjct: 632 KSGPALRCYSPGDIDKELMEAARDFVRNGGLIVDPEAKIASASKILKWYSTDFGKNEMEV 691

Query: 856 LKHASNYLEPTASEALLEALANSQLKVTYQPYDWGLNI 893
           LKHA+NYLEP  SE LLE LA++QLKV YQ YDW +NI
Sbjct: 692 LKHAANYLEPAESEQLLELLASTQLKVMYQNYDWSINI 729

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	893
TAIR|locus:2133524	637	AT4G08550 [Arabidopsis thalian	0.285	0.400	0.690	8.6e-161
TAIR|locus:2081516	630	AT3G11920 [Arabidopsis thalian	0.521	0.739	0.396	6.5e-90
ZFIN|ZDB-GENE-060929-416	372	zgc:152951 "zgc:152951" [Danio	0.335	0.806	0.364	9.5e-53
WB|WBGene00012869	531	Y45F10A.7 [Caenorhabditis eleg	0.516	0.868	0.281	5.2e-51
DICTYBASE|DDB_G0274211	1728	DDB_G0274211 "Ras GTPase activ	0.219	0.113	0.323	6.6e-20
TAIR|locus:2015666	529	AT1G16750 "AT1G16750" [Arabido	0.167	0.283	0.333	2e-14
TAIR|locus:2115164	610	AT4G37080 "AT4G37080" [Arabido	0.217	0.318	0.301	1.7e-12
TAIR|locus:2171499	618	AT5G47380 "AT5G47380" [Arabido	0.171	0.247	0.331	2.2e-12
TAIR|locus:2165487	540	AT5G42690 [Arabidopsis thalian	0.200	0.331	0.316	2.1e-11
TAIR|locus:2089220	582	AT3G13000 [Arabidopsis thalian	0.172	0.264	0.304	2.4e-11

TAIR|locus:2133524 AT4G08550 [Arabidopsis thaliana (taxid:3702)]

 Score = 926 (331.0 bits), Expect = 8.6e-161, Sum P(3) = 8.6e-161
 Identities = 176/255 (69%), Positives = 199/255 (78%)

Query:   638 PKPISEIALRLRFLSYAIFEAYLSEDGRHVDYRTIHGSEEFARYLRTVQELQRVELQDMP 697
             P+PI EIA RLR +  AI EAY S DG+HVDYR+IHGSEEFARYLR +QEL RVEL+DM 
Sbjct:   382 PRPIVEIASRLRLVYRAILEAYTSPDGKHVDYRSIHGSEEFARYLRIIQELHRVELEDMQ 441

Query:   698 REEMLAFFINLYNMMAIHAILVCGHPIGALERRKFFGDFKYVIGGYTYSLSAIQNGILRG 757
             REE LAFFINLYNMMAIH+ILV GHP G  +R K F DFKYVIGGYTYSLSAIQNGILRG
Sbjct:   442 REEKLAFFINLYNMMAIHSILVWGHPAGTFDRTKMFMDFKYVIGGYTYSLSAIQNGILRG 501

Query:   758 NQRPPYNLMKPFGAKDKRSQVALPYPEPSTHFALVCGTRSSPALRCYSPGNIDKELMKAA 817
             NQRP +N MKPFG KDKRS+VALPY EP THF LVCGTRS P LRC++PG IDKELM+AA
Sbjct:   502 NQRPMFNPMKPFGVKDKRSKVALPYAEPLTHFTLVCGTRSGPPLRCFTPGEIDKELMEAA 561

Query:   818 RSFLRGGGLVIDLHAKVATMSMVLKWYSVDFGKNEVEVLKHASNYXXXXXXXXXXXXXXN 877
             R FLR GGL +DL+AKVA +S +  WY VDFG  + E+LKHAS +              +
Sbjct:   562 RDFLRCGGLRVDLNAKVAEISKIFDWYGVDFGNGKEEILKHASTFLEPQLSEALLDCLVD 621

Query:   878 SQLKVTYQPYDWGLN 892
             +Q +V YQPYDWGLN
Sbjct:   622 TQFEVKYQPYDWGLN 636

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

TAIR|locus:2081516 AT3G11920 [Arabidopsis thaliana (taxid:3702)]

 Score = 897 (320.8 bits), Expect = 6.5e-90, P = 6.5e-90
 Identities = 190/479 (39%), Positives = 275/479 (57%)

Query:   423 MKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFN 482
             +KGR+  ++R  C++S  VRLFL  +   + EINIDVY SR+ EL +  GSS VP++FFN
Sbjct:   155 IKGRITFFSRSNCRDSTAVRLFLRERGFDFSEINIDVYSSREKELVERTGSSQVPQIFFN 214

Query:   483 EILMGGLSELKALDESGKLDEKIEYLITXXXXXXXXXXXXSGEDDLSSSG----AIDELA 538
             E   GGL  L +L  SG+ D +++  +              G D+ S++      +DE+ 
Sbjct:   215 EKHFGGLMALNSLRNSGEFDRRVKEFLKEKCCGDAPLPVMYGFDEESNNKDVVVVVDEMM 274

Query:   539 LIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSEDQYLE--REEAVEFGRKLASKLF 596
               V  +++ + +KDR  KM+   NCF G+E V  L +  YL+  R++AVE G++LA K F
Sbjct:   275 RFVRVLRQKLPIKDRLMKMKIVKNCFSGAEMVEILID--YLDCGRKKAVEIGKRLAEKHF 332

Query:   597 FRHVLDENLFEDGNHLYRFLDHDPLVSSQCHNIPRGIIDAKPKPISEIALRLRFLSYAIF 656
               HV  EN FEDGNH YRFL+H+P VS +C+N      D +P+  + +  +L  +  AI 
Sbjct:   333 IHHVFGENEFEDGNHYYRFLEHEPFVS-KCYNFRGSTNDMEPQSAAIVGQKLFKIMTAIL 391

Query:   657 EAYLSEDGRHVDYRTIHGSEEFARYLRTVQELQRVELQDMPREEMLAFFINLYNMMAIHA 716
             E+Y S D   VDY  I  SEEF RYL   Q+  R+ L ++  EE LAFF+NLYN M IHA
Sbjct:   392 ESYSSNDHTSVDYMRISQSEEFRRYLNLAQDFHRLNLVELSTEEKLAFFLNLYNAMVIHA 451

Query:   717 ILVCGHPIGALERRKFFGDFKYVIGGYTYSLSAIQNGILRGNQRPPYNLMKP-FGAKDKR 775
             ++  G P G + RR FF DF+YV+GGY+YSLS+I+N ILR  ++P Y  ++P F     R
Sbjct:   452 LISIGRPEGLIARRSFFTDFQYVVGGYSYSLSSIRNDILRRGRKPSYPFIRPPFNNGKTR 511

Query:   776 SQVALPYPEPSTHFALVCGTRSSPALRCYSPGNIDKELMKAARSFLRGGGLVIDLHAKVA 835
              ++ L    P  HF L  GT+SSP +R ++P  ++ EL +AAR F + GG+ + L  +  
Sbjct:   512 HELGLLKLNPLVHFGLCDGTKSSPVVRFFTPQGVEAELKRAAREFFQNGGIEVVLDKRTI 571

Query:   836 TMSMVLKWYSVDFGKNEVEVLKHASNYXXXXXXXXXXXXXXNS--QLKVTYQPYDWGLN 892
              +S ++KWY  DF + E ++LK    Y              +      + YQ YDW  N
Sbjct:   572 HLSRIIKWYKEDFSE-EKKMLKWIMGYIDSNDAGLLTHLLGDGGGSFNIVYQDYDWSTN 629

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0048653 "anther development" evidence=RCA

ZFIN|ZDB-GENE-060929-416 zgc:152951 "zgc:152951" [Danio rerio (taxid:7955)]

 Score = 479 (173.7 bits), Expect = 9.5e-53, Sum P(2) = 9.5e-53
 Identities = 116/318 (36%), Positives = 169/318 (53%)

Query:   588 GRKLASKLFFRHVLDENLFEDGNHLY-RFLDHDPLVSSQCHNIPRGIIDAKPKPIS---- 642
             G     ++FF ++   N  ED  +L  + L+H  L+S +   +P   +DA P P+     
Sbjct:    57 GHSSVPQIFFNNLYVGNN-EDLQNLDPKRLEH-LLLSVRDEAVP---LDALPVPVENCRS 111

Query:   643 ------EIALRLRFLSYAIFEAYLSEDGRHVDYRTIHGSEEFARYLRTVQELQRVELQDM 696
                   E++  LR L   ++  +LSE+G+ VDY+ +  S  F RY      LQRVEL  M
Sbjct:   112 ETDGGCELSETLRNLILKLYSDHLSENGKTVDYKAMSRSLYFERYCDLAVRLQRVELLSM 171

Query:   697 PREEMLAFFINLYNMMAIHAILVCGHPIGALERRKFFGDFKYVIGGYTYSLSAIQNGILR 756
              REE LAFFIN+YN + IH  L  G P    +R +FF    Y IGG  ++L  I+NG+LR
Sbjct:   172 SREEKLAFFINIYNALVIHGNLRLGFPKNIWQRYRFFNYVSYFIGGEVFTLQDIENGVLR 231

Query:   757 GNQRPPYNLMKPFGAKDKRSQVALPYPEPSTHFALVCGTRSSPALRCYSPGNIDKELMKA 816
             GN++     +KPF   D R QVALP  EP  HFAL CG +  P ++ Y+P +ID +L  A
Sbjct:   232 GNRKGVGQFLKPFSRDDPRLQVALPDVEPLIHFALNCGAKGCPPIKTYTPQDIDGQLRTA 291

Query:   817 ARSFLRGG-GLVIDLHAKVATMSMVLKWYSVDFGKNEVEVLKHASNYXXXXXXXXXXXXX 875
             A +FL      VID   +   +S + KWY  DFG  + +VL    ++             
Sbjct:   292 AEAFLENDDSCVIDSTGREVKLSQIFKWYKGDFGGTDDKVLNWVFDHMRASQKKRKLQAL 351

Query:   876 XNS-QLKVTYQPYDWGLN 892
              ++ ++KV++ PYDW +N
Sbjct:   352 LSTGKVKVSFLPYDWSIN 369

GO:0009055 "electron carrier activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

WB|WBGene00012869 Y45F10A.7 [Caenorhabditis elegans (taxid:6239)]

 Score = 535 (193.4 bits), Expect = 5.2e-51, P = 5.2e-51
 Identities = 139/494 (28%), Positives = 243/494 (49%)

Query:   425 GRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEI 484
             G+V++YT +G  +  + R  L+ + + Y ++++D +P    E+    G+  +P++FFN I
Sbjct:    17 GQVVIYTEIGNSKCAKGRDLLHREGIPYTDVSLDSFPQHSQEIFDRTGTDVLPQIFFNNI 76

Query:   485 LMGGLSEL-KALDESGKLDEKIEYL----ITXXXXXXXXXXXXSGEDDLSSSG------- 532
              +G  ++L + + E+ K +  +E++     T             G ++  +         
Sbjct:    77 YIGHETDLERVIGETNKWESLVEHVRREKCTNGGPIVPHPMNAIGFEEYETENNNKCCDE 136

Query:   533 ---AIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSEDQYLEREEAVEFGR 589
                  DE + +V  MK   ++K+   K++ + N F G E V +L   + ++R EA+E G+
Sbjct:   137 VLWVPDEYSKLVRDMKNAQLIKNNRVKLKVYRNSFKGEELVEWLMRQKGIKRSEALEIGQ 196

Query:   590 KLASKLFFRHVLDENLFEDG-----NHLYRFLDHDPLVSSQCHNIPRGIIDAKPK-PISE 643
             +L      RHV  +   E G     +  Y+ ++ D    ++  N      D K   P++E
Sbjct:   197 ELID----RHVGQQTSKESGMTFSPDRYYQLVEDD---ENKPLNAGEDDGDKKQSFPVAE 249

Query:   644 IALRLRFLSYAIFEAYLSEDGRHVDYRTIHGSEEFARYLRTVQELQRVELQDMPREEMLA 703
                +   L   IF   L++D + + Y  +  ++ F RYL+  +EL  V  +    ++ L 
Sbjct:   250 CNEKFSKLLKPIFNDILTDDNQSIIYGGLSTNDNFTRYLQFSRELNHVTFEGSTSDDRLT 309

Query:   704 FFINLYNMMAIHAILVCGHPIGALERRKFFGDFKYVIGGYTYSLSAIQNGILRGNQRPPY 763
             FFIN+YNMM IH  L  G PIG  +RRK      Y+IGG+ Y+L +I NGILRGN++ P 
Sbjct:   310 FFINVYNMMLIHITLKHGPPIGIWQRRKLVNGTYYLIGGHRYALHSIINGILRGNKKGPG 369

Query:   764 NLMKPFGAKDKRSQVALPYPEPSTHFALVCGTRSSPALRCYSPGNIDKELMKAAR-SFLR 822
              L K FG +D R  ++L   +P  +F+L  G++++P LR Y   +I +E+ + AR + LR
Sbjct:   370 MLWKAFGKQDARLPISLAVCDPLIYFSLCSGSKTTPPLRVYHSKSIHQEMRENARQTLLR 429

Query:   823 GGGLV-IDLHAKVATMSMVLKWYSVDFGKNEVEVLKHASNYXXXXXXXXXXXXXX---NS 878
             G   + +D+   V  +    KW+S DFG +  ++L+   +                    
Sbjct:   430 GDKFLRVDMKKNVIHLGKTFKWFSDDFGGSTEKILQWILDVLDTNESDKKHNLQKLFFTG 489

Query:   879 QLKVTYQPYDWGLN 892
             +  + Y PYDW  N
Sbjct:   490 EYSIEYIPYDWSTN 503

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

DICTYBASE|DDB_G0274211 DDB_G0274211 "Ras GTPase activation domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 293 (108.2 bits), Expect = 6.6e-20, Sum P(3) = 6.6e-20
 Identities = 64/198 (32%), Positives = 105/198 (53%)

Query:   660 LSEDGRHVDYRTIHGSEEFARYLRTVQELQRVELQDMPREEMLAFFINLYNMMAIHAILV 719
             L  +G+ V +  I  + EF+ + R   ELQ V  ++M  + + A FIN++N+M +H   +
Sbjct:  1039 LKMNGQPVHWSAIQTTNEFSNFSRETNELQSVYFENMQADYITAVFINIFNLMMVHLHFL 1098

Query:   720 CGHPIGALERRKFFGDFKYVIGGYTYSLSAIQNGILRGNQRPPYNLMKPFGAKDKRSQVA 779
              G P   + R+++F  ++Y + G  YSLS IQ+GILRGN +   + ++     DKR Q  
Sbjct:  1099 IGPPNSEMRRKQYF-TYRYNVSGCLYSLSDIQHGILRGNPKNSLSRVRQIRGGDKRRQYV 1157

Query:   780 LPYPEPSTHFALVCGTRSSPALRCYSPGNIDKELMKAARSFLRGGGLVIDLHAKVATMSM 839
             +   +P  HFAL     + P +R +SP  + ++L K    F     + I +  K  ++  
Sbjct:  1158 ISTLDPRIHFALFAVNITIPCMRIFSPETVVEDLHKCGEEFC-SSKIDICIKKKEISLPK 1216

Query:   840 VLKWYSVDFGKNEVEVLK 857
             V   Y  DFGK+  E+LK
Sbjct:  1217 VFSHYGTDFGKSRSEMLK 1234

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0046580 "negative regulation of Ras protein signal transduction" evidence=IBA

GO:0032320 "positive regulation of Ras GTPase activity" evidence=IBA

GO:0031235 "intrinsic to internal side of plasma membrane" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0005099 "Ras GTPase activator activity" evidence=IBA

TAIR|locus:2015666 AT1G16750 "AT1G16750" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
 Identities = 52/156 (33%), Positives = 82/156 (52%)

Query:   673 HGSEEFARYLRTVQELQRVELQDMPREEMLAFFINLYNMMAIHAILVCGHPIGALERRKF 732
             + S+E  R+   V+ L RV   ++   E LAF+IN+YN M +HA L  G P   L+    
Sbjct:   293 YASDELWRFRNLVERLARVNPAELSHNEKLAFWINIYNAMIMHAYLAYGVPKTDLKLFSL 352

Query:   733 FGDFKYVIGGYTYSLSAIQNGILRGN---QRPPYNLMKPF---GAKDKRSQVALPYPEPS 786
                  Y +GG++Y+ + I+   L+ +    RP   L+         D++ Q  +  PEP 
Sbjct:   353 MQKAAYTVGGHSYNAATIEYMTLKMSPPLHRPQIALLLSILKLKVSDEQRQAGISTPEPL 412

Query:   787 THFALVCGTRSSPALRCYSPGNIDKELMKAARSFLR 822
               FAL CG  SSPA+R YS  N+ +EL +A + +++
Sbjct:   413 VSFALSCGMHSSPAVRIYSAENVGEELEEAQKDYIQ 448

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2115164 AT4G37080 "AT4G37080" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
 Identities = 60/199 (30%), Positives = 97/199 (48%)

Query:   656 FEAYLSEDGRHVDY-RTIHGSEEFARYLRTVQELQRVELQDMPREEMLAFFINLYNMMAI 714
             ++ + S D   VD  R I+ S    R    + +L  V L  +  ++ LAF+IN YN   +
Sbjct:   363 YKHFSSVDTSSVDLGRRINASFLIHRLKFLLNKLSVVNLDGLSHQQKLAFWINTYNSCVM 422

Query:   715 HAILVCGHPIGALERRKFFGDFKYVIGGYTYSLSAIQNGILRGNQRPPYNLMKPFGAKDK 774
             +A L  G P               ++GG++ +   I++ ILR      +   K    ++ 
Sbjct:   423 NAFLEHGIPATPEMVVALMQKATIIVGGHSLNAITIEHFILRLPYHLKFTCPKTATHEEM 482

Query:   775 R--SQVALPYPEPSTHFALVCGTRSSPALRCYSPGNIDKELMKAARSFLRGGGLVIDLHA 832
             R  S   L + EP   FAL CG+ SSPA+R Y+  N+++EL  A R +L+   + I  + 
Sbjct:   483 RAHSTFGLEWSEPLVTFALACGSWSSPAVRVYTAANVEEELEAAKRDYLQAS-VGISKNN 541

Query:   833 KVATMSMVLKWYSVDFGKN 851
             K+  +  VL WY +DF K+
Sbjct:   542 KLM-LPKVLDWYLLDFAKD 559

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171499 AT5G47380 "AT5G47380" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 2.2e-12, P = 2.2e-12
 Identities = 54/163 (33%), Positives = 81/163 (49%)

Query:   681 YLRTVQELQRVELQDMPREEMLAFFINLYNMMAIHAILVCGHPIGALERRKFFGDFKYVI 740
             Y   V++L+RV +  M     LAF+IN+YN + +HA L  G P  +L R   F    Y I
Sbjct:   359 YRLLVEQLERVTINQMEGNAKLAFWINIYNALLMHAYLAYGVPAHSLRRLALFHKSAYNI 418

Query:   741 GGYTYSLSAIQNGIL--------RGNQRPPYNLMKPFGAKDK-RSQVALPYPEPSTHFAL 791
             GG+  + + I+  I         R  +      ++   A+DK +S  +L  PEP   FAL
Sbjct:   419 GGHIINANTIEYSIFCFQTPRNGRWLETIISTALRKKPAEDKVKSMFSLDKPEPLVCFAL 478

Query:   792 VCGTRSSPALRCYSPGNIDKELMKAARSFLRGGGLVIDLHAKV 834
               G  S P L+ Y+  N+ +EL  + R FL G  +V+ +  KV
Sbjct:   479 CIGALSDPVLKAYTASNVKEELDASKREFL-GANVVVKMQKKV 520

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165487 AT5G42690 [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 61/193 (31%), Positives = 94/193 (48%)

Query:   670 RTIHGSEEFARYL-RTVQELQRVELQDMPREEMLAFFINLYNMMAIHAILVCGHPIGALE 728
             RT   S    R L R +  L  V +Q + ++E LAF+IN+YN   ++  L  G P    +
Sbjct:   308 RTSSSSLFLIRQLKRLLGRLSLVNMQKLNQQEKLAFWINIYNSCMMNGFLEHGIPESP-D 366

Query:   729 RRKFFGDFKYVIGGYTYSLSAIQNGILRGNQRPPYNLMKPFGAKDK----RSQVALPYPE 784
                        +GG+  +   I++ ILR      Y  + P G+K      RS+  L   E
Sbjct:   367 MVTLMQKATINVGGHFLNAITIEHFILRLPHHSKY--ISPKGSKKNEMAVRSKFGLELSE 424

Query:   785 PSTHFALVCGTRSSPALRCYSPGNIDKELMKAARSFLRGG-GLVIDLHAKVATMSMVLKW 843
             P   FAL CG+ SSPA+R Y+   +++EL  A R +L    G+ +    K+  +  ++ W
Sbjct:   425 PLVTFALSCGSWSSPAVRVYTASKVEEELEVAKREYLEASVGISV---VKIG-IPKLMDW 480

Query:   844 YSVDFGKNEVEVL 856
             YS DF K ++E L
Sbjct:   481 YSHDFAK-DIESL 492

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2089220 AT3G13000 [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 2.4e-11, P = 2.4e-11
 Identities = 49/161 (30%), Positives = 82/161 (50%)

Query:   673 HGSEEFARYLRTVQELQRVELQDMPREEMLAFFINLYNMMAIHAILVCGHPIGALERRKF 732
             + S    ++   V++L RV    +   E LAF+INLYN + +HA L  G P   L+    
Sbjct:   343 YASGALKKFRTLVEQLARVNPIHLSCNEKLAFWINLYNALIMHAYLAYGVPKSDLKLFSL 402

Query:   733 FGDFKYVIGGYTYSLSAIQNGILRGN---QRPPYNLM---KPFGAKDKRSQVALPYPEPS 786
                  Y +GG++Y+ + ++  IL+      RP   L+         +++ + ++   EP 
Sbjct:   403 MQKAAYTVGGHSYTAATMEYVILKMKPPMHRPQIALLLAIHKMKVSEEQRRASIDTHEPL 462

Query:   787 THFALVCGTRSSPALRCYSPGNIDKELMKAARSFLRGG-GL 826
               FAL CG  SSPA+R YS   + +E+++A R F++   GL
Sbjct:   463 LGFALSCGMYSSPAVRIYSAKGVKEEMLEAQRDFIQASVGL 503

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005773 "vacuole" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	893
pfam04784	112	pfam04784, DUF547, Protein of unknown function, DU	5e-37
cd03027	73	cd03027, GRX_DEP, Glutaredoxin (GRX) family, Dishe	1e-28
cd04371	81	cd04371, DEP, DEP domain, named after Dishevelled,	1e-17
pfam00610	74	pfam00610, DEP, Domain found in Dishevelled, Egl-1	9e-17
cd02066	72	cd02066, GRX_family, Glutaredoxin (GRX) family; co	1e-14
smart00049	77	smart00049, DEP, Domain found in Dishevelled, Egl-	3e-12
cd04449	83	cd04449, DEP_DEPDC5-like, DEP (Dishevelled, Egl-10	5e-09
cd04442	82	cd04442, DEP_1_DEP6, DEP (Dishevelled, Egl-10, and	2e-08
TIGR02181	79	TIGR02181, GRX_bact, Glutaredoxin, GrxC family	3e-08
cd04448	81	cd04448, DEP_PIKfyve, DEP (Dishevelled, Egl-10, an	7e-08
cd04443	83	cd04443, DEP_GPR155, DEP (Dishevelled, Egl-10, and	1e-07
COG0695	80	COG0695, GrxC, Glutaredoxin and related proteins [	1e-07
cd04439	81	cd04439, DEP_1_P-Rex, DEP (Dishevelled, Egl-10, an	1e-07
pfam00462	60	pfam00462, Glutaredoxin, Glutaredoxin	5e-07
cd03418	75	cd03418, GRX_GRXb_1_3_like, Glutaredoxin (GRX) fam	1e-06
cd03419	82	cd03419, GRX_GRXh_1_2_like, Glutaredoxin (GRX) fam	6e-06
cd04440	93	cd04440, DEP_2_P-Rex, DEP (Dishevelled, Egl-10, an	1e-05
TIGR02180	84	TIGR02180, GRX_euk, Glutaredoxin	1e-05
PRK10638	83	PRK10638, PRK10638, glutaredoxin 3; Provisional	2e-05
cd04446	95	cd04446, DEP_DEPDC4, DEP (Dishevelled, Egl-10, and	2e-04
cd04441	85	cd04441, DEP_2_DEP6, DEP (Dishevelled, Egl-10, and	2e-04
TIGR02190	79	TIGR02190, GlrX-dom, Glutaredoxin-family domain	0.004

>gnl|CDD|218263 pfam04784, DUF547, Protein of unknown function, DUF547

 Score =  134 bits (340), Expect = 5e-37
 Identities = 49/135 (36%), Positives = 68/135 (50%), Gaps = 26/135 (19%)

Query: 690 RVELQDMPREEMLAFFINLYNMMAIHAILVCGHPIGALERR-KFFGDFKYVIGGYTYSLS 748
           RV+ + + REE LAF+INLYN + IH IL         +     +    Y +GG   SL 
Sbjct: 1   RVDPESLSREEQLAFWINLYNALTIHLILDNYPVPSIRDIGFGPWNKAFYTVGGQALSLD 60

Query: 749 AIQNGILRGNQRPPYNLMKPFGAKDKRSQVALPYPEPSTHFALVCGTRSSPALR--CYSP 806
            I++GILRGN                       +P+P  HFAL CG+ S P LR   Y+ 
Sbjct: 61  DIEHGILRGN-----------------------WPDPRIHFALNCGSISCPPLRPEAYTA 97

Query: 807 GNIDKELMKAARSFL 821
            N+D++L +AAR F+
Sbjct: 98  ENLDEQLEEAAREFI 112

Family of uncharacterized proteins from C. elegans and A. thaliana. Length = 112

>gnl|CDD|239325 cd03027, GRX_DEP, Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

 Score =  109 bits (274), Expect = 1e-28
 Identities = 45/73 (61%), Positives = 59/73 (80%)

Query: 425 GRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEI 484
           GRV +Y+RLGC++   VRLFL  K L YVEINID++P RK ELE+  GSS VP++FFNE 
Sbjct: 1   GRVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEK 60

Query: 485 LMGGLSELKALDE 497
           L+GGL++LK+L+E
Sbjct: 61  LVGGLTDLKSLEE 73

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions. Length = 73

>gnl|CDD|239836 cd04371, DEP, DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered

 Score = 78.2 bits (193), Expect = 1e-17
 Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 2/81 (2%)

Query: 536 ELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASK 594
           +L  I+L     V +KDR Y ++ + NCF GSE V++L ++ + + REEAVE G+ L   
Sbjct: 1   DLVRIMLDSDSGVPIKDRKYHLKTYPNCFTGSELVDWLLDNLEAITREEAVELGQALLKH 60

Query: 595 LFFRHVLD-ENLFEDGNHLYR 614
               HV D ++ F D   LYR
Sbjct: 61  GLIHHVSDDKHTFRDSYALYR 81

The function of this domain is still not clear, but it is believed to be important for the membrane association of the signaling proteins in which it is present. New studies show that the DEP domain of Sst2, a yeast RGS protein is necessary and sufficient for receptor interaction. Length = 81

>gnl|CDD|216020 pfam00610, DEP, Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)

 Score = 75.3 bits (186), Expect = 9e-17
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 5/73 (6%)

Query: 548 VVVKDRFYKMRRFTNCFLGSEAVNFL---SEDQYLEREEAVEFGRKLASKLFFRHVLDE- 603
           V +KDR   ++ + NCF GSEAV++L    E   ++REEAVE G+ L       HV D+ 
Sbjct: 2   VKLKDRKKHLKTYPNCFTGSEAVDWLMDNFEGLVIDREEAVELGQLLLDHGLIHHVGDKH 61

Query: 604 NLFEDG-NHLYRF 615
             F D     YRF
Sbjct: 62  RGFLDSKYSFYRF 74

The DEP domain is responsible for mediating intracellular protein targeting and regulation of protein stability in the cell. The DEP domain is present in a number of signaling molecules, including Regulator of G protein Signaling (RGS) proteins, and has been implicated in membrane targeting. New findings in yeast, however, demonstrate a major role for a DEP domain in mediating the interaction of an RGS protein to the C-terminal tail of a GPCR, thus placing RGS in close proximity with its substrate G protein alpha subunit. Length = 74

>gnl|CDD|239017 cd02066, GRX_family, Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score = 69.0 bits (170), Expect = 1e-14
 Identities = 20/72 (27%), Positives = 39/72 (54%)

Query: 426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEIL 485
           +V+++++  C   +  +  L    + + EI+I      + EL++ +G   VP++F N   
Sbjct: 1   KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEF 60

Query: 486 MGGLSELKALDE 497
           +GG  +LKAL E
Sbjct: 61  IGGYDDLKALHE 72

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which are members of this family. E. coli GRX2, however, is a 24-kDa protein that belongs to the GSH S-transferase (GST) family. Length = 72

>gnl|CDD|214489 smart00049, DEP, Domain found in Dishevelled, Egl-10, and Pleckstrin

 Score = 62.3 bits (152), Expect = 3e-12
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 544 MKENVVVKDRFYKMRRFTNCFLGSEAVNFL-SEDQYLEREEAVEFGRKLASKLFFRHVLD 602
            +  + ++DR Y ++ + NCF GSE V++L    + ++REEAV  G+ L  +    HV  
Sbjct: 1   PETGLKLRDRKYFLKTYPNCFTGSELVDWLMDNLEIIDREEAVHLGQLLLDEGLIHHVNG 60

Query: 603 EN--LFEDGNHLYRFLD 617
            N   F+D   LYRF  
Sbjct: 61  PNKHTFKDSKALYRFTT 77

Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118). Length = 77

>gnl|CDD|239896 cd04449, DEP_DEPDC5-like, DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins

 Score = 53.8 bits (130), Expect = 5e-09
 Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 6/84 (7%)

Query: 537 LALIVLKMK--ENVVVKDRFYKMRRFTNCFLGSEAVNFLS---EDQYLEREEAVEFGRKL 591
           LA I   M+    + + DR +     +NCF+GSEAV++L    ED    REEAVE G++L
Sbjct: 1   LAEIAEAMRDPSGIGIFDRSWHKGLPSNCFIGSEAVSWLINNFEDVD-TREEAVELGQEL 59

Query: 592 ASKLFFRHVLDENLFEDGNHLYRF 615
            ++    HV   + F DG + Y  
Sbjct: 60  MNEGLIEHVSGRHPFLDGFYFYYI 83

DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function. Length = 83

>gnl|CDD|239889 cd04442, DEP_1_DEP6, DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 542 LKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSE-DQYLEREEAVEFGRKLASKLFFRHV 600
           L++ E  V+KDR + +R + NCF+G E +++L E  +  +RE A++  +KL       HV
Sbjct: 7   LRLHEAKVIKDRRHHLRTYPNCFVGKELIDWLIEHKEASDRETAIKIMQKLLDHSIIHHV 66

Query: 601 LDENL-FEDGNHLYRF 615
            DE+  F+D    YRF
Sbjct: 67  CDEHKEFKDAKLFYRF 82

DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown. Length = 82

>gnl|CDD|233766 TIGR02181, GRX_bact, Glutaredoxin, GrxC family

 Score = 51.1 bits (123), Expect = 3e-08
 Identities = 25/76 (32%), Positives = 42/76 (55%)

Query: 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILM 486
           V +YT+  C      +  L  K + + EI +D  P+ + E+ + +G   VP++F  ++ +
Sbjct: 1   VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHV 60

Query: 487 GGLSELKALDESGKLD 502
           GG  +L ALD  GKLD
Sbjct: 61  GGCDDLYALDREGKLD 76

Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides [Energy metabolism, Electron transport]. Length = 79

>gnl|CDD|239895 cd04448, DEP_PIKfyve, DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins

 Score = 50.1 bits (120), Expect = 7e-08
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 551 KDRFYKMRRFTNCFLGSEAVNFL-SEDQYLEREEAVEFGRKLASKLFFRHVLDENLFEDG 609
           +D  Y++R +TNC LG E VN+L  + +   R +A+  G+ L    +   V D++LF D 
Sbjct: 16  QDHRYRLRTYTNCILGKELVNWLIRQGKAATRVQAIAIGQALLDAGWIECVSDDDLFRDE 75

Query: 610 NHLYR 614
             LY+
Sbjct: 76  YALYK 80

PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking. Length = 81

>gnl|CDD|239890 cd04443, DEP_GPR155, DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 548 VVVKDRFYKMRRFTNCFLGSEAVNFLSE-DQYLEREEAVEFGRKLASKLFFRHVLDENLF 606
            +VKDR   +R +   F G + V++L E     +R EAV +GR+L      +H+ +E+ F
Sbjct: 15  DIVKDRRCGLRTYKGVFCGCDLVSWLIEVGLAQDRGEAVLYGRRLLQGGVLQHITNEHHF 74

Query: 607 EDGNHLYRF 615
            D N LYRF
Sbjct: 75  RDENLLYRF 83

GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown. Length = 83

>gnl|CDD|223767 COG0695, GrxC, Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 4/79 (5%)

Query: 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP---SRKMELEKFAGSSAVPKVFFNE 483
           V +YT+ GC   +  +  L  K + Y EI++D      +R+M      G   VP++F   
Sbjct: 3   VTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGK-GQRTVPQIFIGG 61

Query: 484 ILMGGLSELKALDESGKLD 502
             +GG  +L AL+  GKLD
Sbjct: 62  KHVGGCDDLDALEAKGKLD 80

Length = 80

>gnl|CDD|239886 cd04439, DEP_1_P-Rex, DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 545 KENVVVKDRFYKMRRFTNCFLGSEAVNFLSEDQYLER-EEAVEFGRKLASKLFFRHVLDE 603
           K+  ++KDR  K+  F  CFLG+E V++L E   + + EE V  G+ L       HV D+
Sbjct: 10  KQGSLIKDRRRKLSTFPKCFLGNEFVSWLLEIGEISKPEEGVNLGQALLENGIIHHVSDK 69

Query: 604 NLFEDGNHLYRF 615
           + F++   LYRF
Sbjct: 70  HQFKNEQVLYRF 81

The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity. Length = 81

>gnl|CDD|215931 pfam00462, Glutaredoxin, Glutaredoxin

 Score = 47.1 bits (113), Expect = 5e-07
 Identities = 16/57 (28%), Positives = 32/57 (56%)

Query: 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNE 483
           V+L+T+  C   +  +  L    +++ EI++D  P  + EL++ +G   VP+VF + 
Sbjct: 1   VVLFTKPTCPFCKRAKRLLDSLGVKFEEIDVDEDPEIREELKELSGWPTVPQVFIDG 57

Length = 60

>gnl|CDD|239510 cd03418, GRX_GRXb_1_3_like, Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMEL-EKFAGSSAVPKVFFNEIL 485
           V +YT+  C      +  L  K + Y EI++D  P+ + E+  +  G   VP++F  ++ 
Sbjct: 2   VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVH 61

Query: 486 MGGLSELKALDESG 499
           +GG  +L AL+  G
Sbjct: 62  IGGCDDLYALERKG 75

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including E. coli GRX1 and GRX3, which are members of this subfamily. Length = 75

>gnl|CDD|239511 cd03419, GRX_GRXh_1_2_like, Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score = 44.8 bits (107), Expect = 6e-06
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 466 ELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDEK 504
            L++  G   VP VF     +GG  +L AL +SGKL + 
Sbjct: 44  YLQELTGQRTVPNVFIGGKFIGGCDDLMALHKSGKLVKL 82

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, which are members of this subfamily. Also included in this subfamily are the N-terminal GRX domains of proteins similar to human thioredoxin reductase 1 and 3. Length = 82

>gnl|CDD|239887 cd04440, DEP_2_P-Rex, DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 549 VVKDRFYKMRRFTNCFLGSEAVNFL-SEDQYLEREEAVEFGRKLASKLFFRHVLDENLFE 607
           VVKDR Y ++ + +    S+ V++L ++     REEAV  G  L +  F  HVL+++ F+
Sbjct: 23  VVKDRDYHLKTYKSVVPASKLVDWLLAQGDCRTREEAVILGVGLCNNGFMHHVLEKSEFK 82

Query: 608 DGNHLYRF 615
           D   L+RF
Sbjct: 83  DEPLLFRF 90

The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity. Length = 93

>gnl|CDD|233765 TIGR02180, GRX_euk, Glutaredoxin

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 18/39 (46%), Positives = 24/39 (61%)

Query: 467 LEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDEKI 505
           LE+  G   VP +F N   +GG S+L AL +SGKL E +
Sbjct: 46  LEEITGQRTVPNIFINGKFIGGCSDLLALYKSGKLAELL 84

Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. Length = 84

>gnl|CDD|182607 PRK10638, PRK10638, glutaredoxin 3; Provisional

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 24/74 (32%), Positives = 40/74 (54%)

Query: 429 LYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGG 488
           +YT+  C      +  L  K + + EI ID   +++ E+ K +G + VP++F +   +GG
Sbjct: 6   IYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGG 65

Query: 489 LSELKALDESGKLD 502
             +L ALD  G LD
Sbjct: 66  CDDLYALDARGGLD 79

Length = 83

>gnl|CDD|239893 cd04446, DEP_DEPDC4, DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC4-like proteins

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 540 IVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSEDQYLERE---EAVEFGRKLASKLF 596
           I+  ++  V VK R + ++ + +CFLGSEAV+ +    +L +      V+  R  A +L 
Sbjct: 4   IIDALQTQVEVKKRRHNLKSYHDCFLGSEAVDVVLA--HLMQNKYFGDVDVPRAKAVRL- 60

Query: 597 FRHVLDENLFED 608
            + ++D  +FE 
Sbjct: 61  CQALMDCRVFEA 72

DEPDC4 is a DEP domain containing protein of unknown function. Length = 95

>gnl|CDD|239888 cd04441, DEP_2_DEP6, DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 546 ENVVVKDRFYKMRRFTNCFLGSEAVNFL-SEDQYLEREEAVEFGRKLASKLFFRHVLDEN 604
           EN +++ R  +  ++   F+GSE +++L  E +   R EAV+  R+L      +HV +++
Sbjct: 15  ENSILQVREEEGVKYERTFVGSEFIDWLLQEGEAESRREAVQLCRRLLEHGIIQHVSNKH 74

Query: 605 LFEDGNHLYRF 615
            F D N LY+F
Sbjct: 75  HFFDSNLLYQF 85

DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown. Length = 85

>gnl|CDD|131245 TIGR02190, GlrX-dom, Glutaredoxin-family domain

 Score = 36.7 bits (85), Expect = 0.004
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILM 486
           V+++T+ GC    + +  L  K   + EI +    +R   L    G++ VP+VF    L+
Sbjct: 10  VVVFTKPGCPFCAKAKATLKEKGYDFEEIPLG-NDARGRSLRAVTGATTVPQVFIGGKLI 68

Query: 487 GGLSELKA 494
           GG  EL+A
Sbjct: 69  GGSDELEA 76

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain. Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	893
PF04784	117	DUF547: Protein of unknown function, DUF547; Inter	100.0
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	99.83
PRK10824	115	glutaredoxin-4; Provisional	99.82
PHA03050	108	glutaredoxin; Provisional	99.82
cd04440	93	DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstr	99.81
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	99.8
cd04448	81	DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstr	99.8
PRK10638	83	glutaredoxin 3; Provisional	99.79
cd04437	125	DEP_Epac DEP (Dishevelled, Egl-10, and Pleckstrin)	99.78
cd04442	82	DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstri	99.78
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	99.78
cd04439	81	DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstr	99.77
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	99.77
cd04441	85	DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstri	99.77
cd04443	83	DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstri	99.76
cd04438	84	DEP_dishevelled DEP (Dishevelled, Egl-10, and Plec	99.76
cd04449	83	DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Plec	99.75
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	99.74
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	99.73
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	99.73
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	99.73
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	99.72
cd04446	95	DEP_DEPDC4 DEP (Dishevelled, Egl-10, and Pleckstri	99.71
PTZ00062	204	glutaredoxin; Provisional	99.69
cd04447	92	DEP_BRCC3 DEP (Dishevelled, Egl-10, and Pleckstrin	99.68
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	99.67
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	99.67
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	99.65
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	99.65
PRK11200	85	grxA glutaredoxin 1; Provisional	99.65
PF00610	74	DEP: Domain found in Dishevelled, Egl-10, and Plec	99.65
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	99.63
cd04444	109	DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin	99.62
smart00049	77	DEP Domain found in Dishevelled, Egl-10, and Pleck	99.6
COG0278	105	Glutaredoxin-related protein [Posttranslational mo	99.6
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	99.59
cd04450	88	DEP_RGS7-like DEP (Dishevelled, Egl-10, and Plecks	99.57
cd03030	92	GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3	99.56
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	99.54
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	99.54
cd04371	81	DEP DEP domain, named after Dishevelled, Egl-10, a	99.52
cd04445	99	DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin	99.44
PRK10329	81	glutaredoxin-like protein; Provisional	99.44
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	99.43
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	99.36
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	99.21
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	99.11
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	99.0
KOG2824	281	consensus Glutaredoxin-related protein [Posttransl	98.99
PF04908	99	SH3BGR: SH3-binding, glutamic acid-rich protein; I	98.96
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	98.81
KOG3571	626	consensus Dishevelled 3 and related proteins [Gene	98.74
cd03041	77	GST_N_2GST_N GST_N family, 2 repeats of the N-term	98.7
cd00570	71	GST_N_family Glutathione S-transferase (GST) famil	98.61
cd03040	77	GST_N_mPGES2 GST_N family; microsomal Prostaglandi	98.56
cd03055	89	GST_N_Omega GST_N family, Class Omega subfamily; G	98.54
cd03037	71	GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) sub	98.49
KOG3572	1701	consensus Uncharacterized conserved protein, conta	98.47
cd04436	84	DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin	98.33
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	98.32
cd03059	73	GST_N_SspA GST_N family, Stringent starvation prot	98.29
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	98.28
cd03051	74	GST_N_GTT2_like GST_N family, Saccharomyces cerevi	98.25
cd03045	74	GST_N_Delta_Epsilon GST_N family, Class Delta and	98.22
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	98.21
PF13417	75	GST_N_3: Glutathione S-transferase, N-terminal dom	98.13
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	98.13
cd03056	73	GST_N_4 GST_N family, unknown subfamily 4; compose	98.1
PRK01655	131	spxA transcriptional regulator Spx; Reviewed	98.04
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	98.03
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	98.02
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	97.91
TIGR01617	117	arsC_related transcriptional regulator, Spx/MgsR f	97.89
cd03032	115	ArsC_Spx Arsenate Reductase (ArsC) family, Spx sub	97.89
PRK12559	131	transcriptional regulator Spx; Provisional	97.81
PRK13344	132	spxA transcriptional regulator Spx; Reviewed	97.77
PHA02125	75	thioredoxin-like protein	97.75
cd03035	105	ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s	97.73
cd03054	72	GST_N_Metaxin GST_N family, Metaxin subfamily; com	97.71
cd03052	73	GST_N_GDAP1 GST_N family, Ganglioside-induced diff	97.69
cd03053	76	GST_N_Phi GST_N family, Class Phi subfamily; compo	97.68
cd03058	74	GST_N_Tau GST_N family, Class Tau subfamily; GSTs	97.66
cd04435	82	DEP_fRom2 DEP (Dishevelled, Egl-10, and Pleckstrin	97.64
cd03033	113	ArsC_15kD Arsenate Reductase (ArsC) family, 15kD p	97.58
cd03049	73	GST_N_3 GST_N family, unknown subfamily 3; compose	97.5
cd03042	73	GST_N_Zeta GST_N family, Class Zeta subfamily; GST	97.46
KOG4023	108	consensus Uncharacterized conserved protein [Funct	97.44
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	97.43
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	97.39
cd03076	73	GST_N_Pi GST_N family, Class Pi subfamily; GSTs ar	97.37
cd03039	72	GST_N_Sigma_like GST_N family, Class Sigma_like; c	97.36
cd03080	75	GST_N_Metaxin_like GST_N family, Metaxin subfamily	97.3
cd03048	81	GST_N_Ure2p_like GST_N family, Ure2p-like subfamil	97.28
PRK10387	210	glutaredoxin 2; Provisional	97.27
TIGR02182	209	GRXB Glutaredoxin, GrxB family. This model include	97.27
COG1393	117	ArsC Arsenate reductase and related proteins, glut	97.25
cd03061	91	GST_N_CLIC GST_N family, Chloride Intracellular Ch	97.24
PRK10026	141	arsenate reductase; Provisional	97.23
cd03038	84	GST_N_etherase_LigE GST_N family, Beta etherase Li	97.14
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	97.11
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	97.08
cd03050	76	GST_N_Theta GST_N family, Class Theta subfamily; c	97.06
cd03044	75	GST_N_EF1Bgamma GST_N family, Gamma subunit of Elo	97.04
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	97.03
PRK10853	118	putative reductase; Provisional	97.02
PRK09481	211	sspA stringent starvation protein A; Provisional	97.01
TIGR00014	114	arsC arsenate reductase (glutaredoxin). composed o	96.99
cd03034	112	ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC s	96.96
TIGR01616	126	nitro_assoc nitrogenase-associated protein. This m	96.96
PF13409	70	GST_N_2: Glutathione S-transferase, N-terminal dom	96.93
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	96.93
cd02947	93	TRX_family TRX family; composed of two groups: Gro	96.9
KOG3029	370	consensus Glutathione S-transferase-related protei	96.8
cd03057	77	GST_N_Beta GST_N family, Class Beta subfamily; GST	96.78
cd03047	73	GST_N_2 GST_N family, unknown subfamily 2; compose	96.76
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	96.63
PHA02278	103	thioredoxin-like protein	96.48
cd03046	76	GST_N_GTT1_like GST_N family, Saccharomyces cerevi	96.42
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	96.34
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.34
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	96.3
PRK15113	214	glutathione S-transferase; Provisional	96.29
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	96.26
TIGR00862	236	O-ClC intracellular chloride channel protein. Thes	96.24
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	96.23
PLN02473	214	glutathione S-transferase	96.17
COG4545	85	Glutaredoxin-related protein [Posttranslational mo	96.17
KOG0406	231	consensus Glutathione S-transferase [Posttranslati	96.12
cd03043	73	GST_N_1 GST_N family, unknown subfamily 1; compose	96.06
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	96.05
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	96.03
PTZ00051	98	thioredoxin; Provisional	95.91
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	95.91
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	95.85
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	95.84
PF03960	110	ArsC: ArsC family; InterPro: IPR006660 Several bac	95.83
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	95.76
PRK09381	109	trxA thioredoxin; Provisional	95.62
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	95.57
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	95.48
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	95.37
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	95.25
TIGR01262	210	maiA maleylacetoacetate isomerase. Maleylacetoacet	95.24
PLN02817	265	glutathione dehydrogenase (ascorbate)	95.18
PLN02378	213	glutathione S-transferase DHAR1	95.17
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	95.12
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	95.12
PLN02395	215	glutathione S-transferase	95.11
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	95.03
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	94.99
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	94.88
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	94.83
COG0625	211	Gst Glutathione S-transferase [Posttranslational m	94.69
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	94.64
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	94.52
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	94.52
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	94.49
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	94.41
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	94.28
PRK10357	202	putative glutathione S-transferase; Provisional	94.25
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	94.21
PRK10996	139	thioredoxin 2; Provisional	94.18
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	94.17
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	94.17
cd03077	79	GST_N_Alpha GST_N family, Class Alpha subfamily; G	94.11
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	94.11
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	93.93
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	93.91
PRK13972	215	GSH-dependent disulfide bond oxidoreductase; Provi	93.89
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	93.8
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	93.69
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	93.63
PRK13728	181	conjugal transfer protein TrbB; Provisional	93.63
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	93.62
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	93.41
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	93.35
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	93.27
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	93.27
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	93.02
PF06764	202	DUF1223: Protein of unknown function (DUF1223); In	92.96
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	92.75
COG2999	215	GrxB Glutaredoxin 2 [Posttranslational modificatio	92.74
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	92.71
PTZ00057	205	glutathione s-transferase; Provisional	92.59
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	92.3
PF02798	76	GST_N: Glutathione S-transferase, N-terminal domai	92.23
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	91.94
COG3118	304	Thioredoxin domain-containing protein [Posttransla	91.89
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	91.29
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	91.27
cd03078	73	GST_N_Metaxin1_like GST_N family, Metaxin subfamil	91.2
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	91.08
PRK11752	264	putative S-transferase; Provisional	90.79
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	90.74
cd03079	74	GST_N_Metaxin2 GST_N family, Metaxin subfamily, Me	90.46
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	90.35
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	90.28
PRK10542	201	glutathionine S-transferase; Provisional	89.76
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	89.55
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	89.51
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	89.45
KOG1422	221	consensus Intracellular Cl- channel CLIC, contains	89.4
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	89.23
cd03075	82	GST_N_Mu GST_N family, Class Mu subfamily; GSTs ar	87.31
PF06953	123	ArsD: Arsenical resistance operon trans-acting rep	87.03
PF13728	215	TraF: F plasmid transfer operon protein	86.88
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	86.76
COG5494	265	Predicted thioredoxin/glutaredoxin [Posttranslatio	86.43
PTZ00062	204	glutaredoxin; Provisional	86.36
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	86.05
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	85.76
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	85.24
KOG0867	226	consensus Glutathione S-transferase [Posttranslati	84.77
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	84.74
COG3019	149	Predicted metal-binding protein [General function	84.74
PF07315	93	DUF1462: Protein of unknown function (DUF1462); In	84.72
PTZ00102	477	disulphide isomerase; Provisional	84.05
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	83.63
KOG4244	281	consensus Failed axon connections (fax) protein/gl	83.6
PLN02309	457	5'-adenylylsulfate reductase	83.55
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	82.44
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	81.07
COG2143	182	Thioredoxin-related protein [Posttranslational mod	80.9
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	80.51

>PF04784 DUF547: Protein of unknown function, DUF547; InterPro: IPR006869 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans and Arabidopsis thaliana (Mouse-ear cress)

Probab=100.00  E-value=2.5e-36  Score=285.85  Aligned_cols=112  Identities=52%  Similarity=0.979  Sum_probs=105.2

Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhh---hcccCceEEEEcCEEecHHHHHHhcccCCCCCCCCCC
Q 002682          690 RVELQDMPREEMLAFFINLYNMMAIHAILVCGHPIGALER---RKFFGDFKYVIGGYTYSLSAIQNGILRGNQRPPYNLM  766 (893)
Q Consensus       690 ~VdL~~Ls~eEkLAFwINLYNaLvIHaiL~~G~P~s~l~r---~~ff~~~~Y~IGG~~~SL~DIEhgILR~N~~~p~~l~  766 (893)
                      +||++.|+++||+|||||+||+|+||+++..|+|.+..++   ..||++..|.|||+.+||+||||+|||+++++     
T Consensus         1 ~v~~~~l~~~e~lAFwIN~yNal~~h~~l~~~~~~s~~~~~~~~~~~~~~~y~Igg~~~SL~dIe~~ILR~~~~~-----   75 (117)
T PF04784_consen    1 RVDLSSLSREEKLAFWINLYNALVLHAILENGPPKSILDRKLGGSFFSKVRYNIGGQRFSLDDIEHGILRGNRPP-----   75 (117)
T ss_pred             CcChHHCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhhcccccccceEEEECCEEecHHHHHHhhccCCCCC-----
Confidence            5789999999999999999999999999999988787776   69999999999999999999999999997542     


Q ss_pred             CCCCCcccccccCCCCCCceeEEeeccCCCCCCCcc--ccCcccHHHHHHHHHHHHH
Q 002682          767 KPFGAKDKRSQVALPYPEPSTHFALVCGTRSSPALR--CYSPGNIDKELMKAARSFL  821 (893)
Q Consensus       767 kpF~~~D~R~~~aL~~~DPRIHFAL~CGS~ScPpLr--~Ytpe~LdeQL~~Aar~FL  821 (893)
                                     ++||||||||+||+.|||+||  +|+|++|++||+.||++||
T Consensus        76 ---------------~~DprihFaL~cgs~s~P~lr~~~yt~~~l~~qL~~a~~~fi  117 (117)
T PF04784_consen   76 ---------------WPDPRIHFALNCGSKSCPPLRREAYTAENLDEQLEEAAREFI  117 (117)
T ss_pred             ---------------CCCCceeeeeecCCCCChhhhhhccCHHHHHHHHHHHHHhhC
Confidence                           579999999999999999999  9999999999999999996

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=99.83  E-value=1.5e-20  Score=173.37  Aligned_cols=85  Identities=28%  Similarity=0.400  Sum_probs=78.3

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChh---HHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHhcCc
Q 002682          424 KGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPS---RKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGK  500 (893)
Q Consensus       424 kgkVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e---~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~esGe  500 (893)
                      .++|+||++++||||.+||++|+++|++|+++||+.++.   .++++.+++|++|||+|||||++||||++|.+++++|+
T Consensus         7 ~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l~~~G~   86 (99)
T TIGR02189         7 EKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMALHISGS   86 (99)
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHHHHcCC
Confidence            357999999999999999999999999999999998765   44577888899999999999999999999999999999


Q ss_pred             chHHHHHH
Q 002682          501 LDEKIEYL  508 (893)
Q Consensus       501 L~~lLk~~  508 (893)
                      |.++|+.+
T Consensus        87 L~~~l~~~   94 (99)
T TIGR02189        87 LVPMLKQA   94 (99)
T ss_pred             HHHHHHHh
Confidence            99999765

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>PRK10824 glutaredoxin-4; Provisional

Probab=99.82  E-value=2.9e-20  Score=176.46  Aligned_cols=86  Identities=22%  Similarity=0.351  Sum_probs=81.8

Q ss_pred             CCcEEEEEc-----CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHhc
Q 002682          424 KGRVILYTR-----LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDES  498 (893)
Q Consensus       424 kgkVvLYTk-----sgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~es  498 (893)
                      .++|+||++     |+||||++|+++|.++|++|..+||+.+++.+++|.+++|++|||||||||++|||+|+|.+++++
T Consensus        14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l~~~   93 (115)
T PRK10824         14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQR   93 (115)
T ss_pred             cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHHHC
Confidence            357999999     599999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchHHHHHHH
Q 002682          499 GKLDEKIEYLI  509 (893)
Q Consensus       499 GeL~~lLk~~~  509 (893)
                      |+|+++|+.+-
T Consensus        94 G~L~~lL~~~~  104 (115)
T PRK10824         94 GELQQLIKETA  104 (115)
T ss_pred             CCHHHHHHHHH
Confidence            99999998764

>PHA03050 glutaredoxin; Provisional

Probab=99.82  E-value=3e-20  Score=174.22  Aligned_cols=85  Identities=21%  Similarity=0.430  Sum_probs=80.3

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHhcCC---ceEEEEcCC---ChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHh
Q 002682          424 KGRVILYTRLGCQESREVRLFLYWKRL---RYVEINIDV---YPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE  497 (893)
Q Consensus       424 kgkVvLYTksgCP~CkrAK~lL~e~GI---~YeeIDId~---d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~e  497 (893)
                      .++|+||+++|||||.+||++|+++|+   +|+++||+.   ..+.+++|.+.+|++|||+|||||++||||++|+++++
T Consensus        12 ~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~l~~   91 (108)
T PHA03050         12 NNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLEIDN   91 (108)
T ss_pred             cCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHHHHH
Confidence            357999999999999999999999999   799999986   56889999999999999999999999999999999999


Q ss_pred             cCcchHHHHHH
Q 002682          498 SGKLDEKIEYL  508 (893)
Q Consensus       498 sGeL~~lLk~~  508 (893)
                      +|+|.++|+.+
T Consensus        92 ~g~L~~~l~~~  102 (108)
T PHA03050         92 MDALGDILSSI  102 (108)
T ss_pred             cCCHHHHHHHc
Confidence            99999999875

>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins

Probab=99.81  E-value=4.1e-20  Score=169.12  Aligned_cols=72  Identities=35%  Similarity=0.561  Sum_probs=68.3

Q ss_pred             CceeeccccceeeecccccchhHHHHHHhh-cccCHHHHHHHHHHHHhcccccccccccccccCCceEEecCC
Q 002682          547 NVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYRFLDH  618 (893)
Q Consensus       547 gi~IKDRr~~LrtYk~CF~GsELVDWLie~-~v~sReEAv~lGQ~Lld~glI~hV~~~~~F~Dg~~LYRF~~d  618 (893)
                      +-.|+||+|++++|++||+|+|||+||+++ .+.+|+||+.+||.|++.|+|+||.++|.|+|+++||||..|
T Consensus        21 ~~likdR~~~l~~y~~cFvGsElVdWLi~~g~~~tR~eAv~~gq~Ll~~gii~HV~~~h~F~D~~lfYrF~~d   93 (93)
T cd04440          21 TPVVKDRDYHLKTYKSVVPASKLVDWLLAQGDCRTREEAVILGVGLCNNGFMHHVLEKSEFKDEPLLFRFYAD   93 (93)
T ss_pred             ccceeeceeccEEcccccchhHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCEEecCCCcCcCCcCeEEEEecC
Confidence            448999999999999999999999999998 578999999999999999999999999999999999999864

The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=99.80  E-value=1.1e-19  Score=166.97  Aligned_cols=81  Identities=17%  Similarity=0.355  Sum_probs=77.9

Q ss_pred             CcEEEEEc-----CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHhcC
Q 002682          425 GRVILYTR-----LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESG  499 (893)
Q Consensus       425 gkVvLYTk-----sgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~esG  499 (893)
                      ++|+||++     ++||||.+||++|+++||+|+++||..+++.+++|.+++|++|||+|||||++|||+++|.+++++|
T Consensus        12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l~~~g   91 (97)
T TIGR00365        12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEMYQSG   91 (97)
T ss_pred             CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHHHHCc
Confidence            57999998     8999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHH
Q 002682          500 KLDEKI  505 (893)
Q Consensus       500 eL~~lL  505 (893)
                      +|.++|
T Consensus        92 ~L~~~l   97 (97)
T TIGR00365        92 ELQTLL   97 (97)
T ss_pred             ChHHhC
Confidence            998875

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins

Probab=99.80  E-value=5e-20  Score=164.90  Aligned_cols=78  Identities=31%  Similarity=0.557  Sum_probs=73.8

Q ss_pred             HHHHHHhccCCceeeccccceeeecccccchhHHHHHHhh-cccCHHHHHHHHHHHHhcccccccccccccccCCceEE
Q 002682          537 LALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYR  614 (893)
Q Consensus       537 La~iv~~mk~gi~IKDRr~~LrtYk~CF~GsELVDWLie~-~v~sReEAv~lGQ~Lld~glI~hV~~~~~F~Dg~~LYR  614 (893)
                      |...|++...|+.|+||++++++|++||+|+|||+||+++ .+.+|.||+.+||.|+++|+|+||.++|.|+|+++|||
T Consensus         2 l~~~m~~~~~gv~i~drr~~~~~y~~cF~GselVdWL~~~~~~~~R~eAv~~gq~Ll~~g~i~hV~~~~~F~D~~~~Yr   80 (81)
T cd04448           2 LWEKICRSSTGIEFQDHRYRLRTYTNCILGKELVNWLIRQGKAATRVQAIAIGQALLDAGWIECVSDDDLFRDEYALYK   80 (81)
T ss_pred             HHHHhhCcCCCCeeEEEEECCEEcCcccChHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCEEecCCCCccccCccccC
Confidence            5667778888999999999999999999999999999998 57999999999999999999999999999999999997

PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.

>PRK10638 glutaredoxin 3; Provisional

Probab=99.79  E-value=2.8e-19  Score=158.40  Aligned_cols=83  Identities=31%  Similarity=0.532  Sum_probs=79.1

Q ss_pred             CCCcEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHhcCcch
Q 002682          423 MKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLD  502 (893)
Q Consensus       423 MkgkVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~esGeL~  502 (893)
                      |. +|+||++++||||++|+.+|+++|++|+++||+.+++.++++.+++|..+||+||+||++||||+++.+++++|+|.
T Consensus         1 m~-~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~g~l~   79 (83)
T PRK10638          1 MA-NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLD   79 (83)
T ss_pred             CC-cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHcCCHH
Confidence            44 79999999999999999999999999999999999888899999999999999999999999999999999999999


Q ss_pred             HHHH
Q 002682          503 EKIE  506 (893)
Q Consensus       503 ~lLk  506 (893)
                      ++|+
T Consensus        80 ~~~~   83 (83)
T PRK10638         80 PLLK   83 (83)
T ss_pred             HHhC
Confidence            8874

>cd04437 DEP_Epac DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in Epac-like proteins

Probab=99.78  E-value=4.2e-19  Score=170.60  Aligned_cols=80  Identities=28%  Similarity=0.467  Sum_probs=74.4

Q ss_pred             cCCceeeccccceeeecccccchhHHHHHHhh--cccCHHHHHHHHHHHHhcccccccccccccccCCceEEecCCCCcc
Q 002682          545 KENVVVKDRFYKMRRFTNCFLGSEAVNFLSED--QYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYRFLDHDPLV  622 (893)
Q Consensus       545 k~gi~IKDRr~~LrtYk~CF~GsELVDWLie~--~v~sReEAv~lGQ~Lld~glI~hV~~~~~F~Dg~~LYRF~~ddP~~  622 (893)
                      ..+..||||+|++++|++||+|+||||||+++  .+.+|+||+.+||.|+++|+|+||.++|.|+|+++||||..+++..
T Consensus        12 ~~~~~ikdR~~~~~~y~~cF~GsElVdWLl~~~~~v~sR~eAv~lgq~Ll~~gvi~HV~~~h~F~D~~~fYrF~~d~~~~   91 (125)
T cd04437          12 DAPHLIRDRKYHLRTYRQCCVGTELVDWLLQQSPCVQSRSQAVGMWQVLLEEGVLLHVDQELHFQDKYQFYRFSDDECSP   91 (125)
T ss_pred             cCcccceeeeECCEECCcccccHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEeCCcCccccCCeeEEECCccCCc
Confidence            44779999999999999999999999999999  3689999999999999999999999999999999999999998765


Q ss_pred             cc
Q 002682          623 SS  624 (893)
Q Consensus       623 ~s  624 (893)
                      .+
T Consensus        92 ~~   93 (125)
T cd04437          92 AP   93 (125)
T ss_pred             cc
Confidence            43

Epac (exchange proteins directly activated by cAMP) proteins are GEFs (guanine-nucleotide-exchange factors) for the small GTPases, Rap1 and Rap2. They are directly regulated by cyclic AMP, a second messenger that plays a role in the control of diverse cellular processes, such as cell adhesion and insulin secretion. Epac-like proteins share a common domain architecture, containing RasGEF, DEP and CAP-effector (cAMP binding) domains. The DEP domain is involved in membrane localization.

>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins

Probab=99.78  E-value=1.3e-19  Score=162.74  Aligned_cols=72  Identities=38%  Similarity=0.694  Sum_probs=67.8

Q ss_pred             ccCCceeeccccceeeecccccchhHHHHHHhhc-ccCHHHHHHHHHHHHhccccccccccc-ccccCCceEEe
Q 002682          544 MKENVVVKDRFYKMRRFTNCFLGSEAVNFLSEDQ-YLEREEAVEFGRKLASKLFFRHVLDEN-LFEDGNHLYRF  615 (893)
Q Consensus       544 mk~gi~IKDRr~~LrtYk~CF~GsELVDWLie~~-v~sReEAv~lGQ~Lld~glI~hV~~~~-~F~Dg~~LYRF  615 (893)
                      +.++..|+||+|++++|++||+|+||||||+++. +.+|+||+.+||.|++.|+|+||.++| .|+|+++||||
T Consensus         9 ~~~~~~IkdR~~~~r~y~~cF~GselVdWL~~~~~~~sR~eAv~lgq~Ll~~gvi~HV~~~h~~F~D~~~fYrF   82 (82)
T cd04442           9 LHEAKVIKDRRHHLRTYPNCFVGKELIDWLIEHKEASDRETAIKIMQKLLDHSIIHHVCDEHKEFKDAKLFYRF   82 (82)
T ss_pred             cCCCCeeeeeEECCEEcCceeEcHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCEEeccCCcCceeCCceeeeC
Confidence            3557899999999999999999999999999994 789999999999999999999999998 69999999998

DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=99.78  E-value=6.9e-19  Score=153.47  Aligned_cols=79  Identities=32%  Similarity=0.573  Sum_probs=76.3

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHhcCcchHHH
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDEKI  505 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~esGeL~~lL  505 (893)
                      |+||++++||+|.+|+++|+++|++|+++||+.+++.++++.+.+|+.+||+|||||++|||++++.+++++|+|.++|
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~g~l~~~l   79 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDREGKLDPLL   79 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHcCChhhhC
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999999998764

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins

Probab=99.77  E-value=2.7e-19  Score=160.29  Aligned_cols=71  Identities=38%  Similarity=0.651  Sum_probs=67.7

Q ss_pred             cCCceeeccccceeeecccccchhHHHHHHhh-cccCHHHHHHHHHHHHhcccccccccccccccCCceEEe
Q 002682          545 KENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYRF  615 (893)
Q Consensus       545 k~gi~IKDRr~~LrtYk~CF~GsELVDWLie~-~v~sReEAv~lGQ~Lld~glI~hV~~~~~F~Dg~~LYRF  615 (893)
                      ..+..|+||+|++++|++||+|+|||+||+++ .+.+|+||+.+||.|++.|+|+||.++|.|+|+++||||
T Consensus        10 ~~~~~ikdr~~~~~~~~~cF~GselVdWL~~~~~~~~r~eAv~lg~~Ll~~G~i~HV~~~h~FkD~~~fYrF   81 (81)
T cd04439          10 KQGSLIKDRRRKLSTFPKCFLGNEFVSWLLEIGEISKPEEGVNLGQALLENGIIHHVSDKHQFKNEQVLYRF   81 (81)
T ss_pred             cCCCceEeeEECcEEcCceeEhHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCEEecCCCCCEecCCeEEeC
Confidence            45778999999999999999999999999998 578899999999999999999999999999999999998

The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=99.77  E-value=1.3e-18  Score=157.12  Aligned_cols=78  Identities=24%  Similarity=0.409  Sum_probs=75.2

Q ss_pred             CcEEEEEc-----CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHhcC
Q 002682          425 GRVILYTR-----LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESG  499 (893)
Q Consensus       425 gkVvLYTk-----sgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~esG  499 (893)
                      ++|+||++     ++||||.+|+++|+++|++|+++||..+++.+++|.+.+|+.|||+|||||++|||++++++++++|
T Consensus         8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~~~g   87 (90)
T cd03028           8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEMHESG   87 (90)
T ss_pred             CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHHHHcC
Confidence            47999998     6999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cch
Q 002682          500 KLD  502 (893)
Q Consensus       500 eL~  502 (893)
                      +|+
T Consensus        88 ~L~   90 (90)
T cd03028          88 ELQ   90 (90)
T ss_pred             CcC
Confidence            985

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins

Probab=99.77  E-value=5.5e-19  Score=159.53  Aligned_cols=70  Identities=31%  Similarity=0.519  Sum_probs=66.6

Q ss_pred             CCceeeccccceeeecccccchhHHHHHHhh-cccCHHHHHHHHHHHHhcccccccccccccccCCceEEe
Q 002682          546 ENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYRF  615 (893)
Q Consensus       546 ~gi~IKDRr~~LrtYk~CF~GsELVDWLie~-~v~sReEAv~lGQ~Lld~glI~hV~~~~~F~Dg~~LYRF  615 (893)
                      .+..|++|++++++|++||+|+||||||+++ .+.+|+||+.+||+|+++|+|+||.++|.|+|+++||||
T Consensus        15 ~~~~ik~R~~~~~~y~~cF~GsElVdWL~~~~~~~sR~eAv~lgq~Ll~~gii~HV~~~h~F~D~~~fYrF   85 (85)
T cd04441          15 ENSILQVREEEGVKYERTFVGSEFIDWLLQEGEAESRREAVQLCRRLLEHGIIQHVSNKHHFFDSNLLYQF   85 (85)
T ss_pred             CCCceeeeEeCCEEcCCEeEchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCEEecCCCCCccCCCeeeeC
Confidence            3457999999999999999999999999999 478999999999999999999999999999999999998

DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.

>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins

Probab=99.76  E-value=5.3e-19  Score=159.08  Aligned_cols=79  Identities=34%  Similarity=0.530  Sum_probs=70.3

Q ss_pred             HHHHHHhccCCceeeccccceeeecccccchhHHHHHHhh-cccCHHHHHHHHHHHHhcccccccccccccccCCceEEe
Q 002682          537 LALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYRF  615 (893)
Q Consensus       537 La~iv~~mk~gi~IKDRr~~LrtYk~CF~GsELVDWLie~-~v~sReEAv~lGQ~Lld~glI~hV~~~~~F~Dg~~LYRF  615 (893)
                      +.........+..||||+|++++|++||+|+|||+||+++ .+.+|+||+.+||.|++.|+|+||.+++.|+|+++||||
T Consensus         4 f~~~~~~~~~~~~ikdR~~~~~~y~~cF~GselVdWL~~~~~~~sR~eAv~lg~~Ll~~G~i~HV~~~~~F~D~~~~YrF   83 (83)
T cd04443           4 FVRYHLDQCRQDIVKDRRCGLRTYKGVFCGCDLVSWLIEVGLAQDRGEAVLYGRRLLQGGVLQHITNEHHFRDENLLYRF   83 (83)
T ss_pred             HHHHHHhcccchhhccceecceeccccccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCEEecCCCcCEecCCeeEeC
Confidence            3333334444458999999999999999999999999998 579999999999999999999999999999999999998

GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.

>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins

Probab=99.76  E-value=7.7e-19  Score=158.38  Aligned_cols=79  Identities=23%  Similarity=0.437  Sum_probs=71.4

Q ss_pred             HHHHHHhccCCceeeccccceeeecccccchhHHHHHHhh--cccCHHHHHHHHHHHHhcccccccccccccccCCceEE
Q 002682          537 LALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED--QYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYR  614 (893)
Q Consensus       537 La~iv~~mk~gi~IKDRr~~LrtYk~CF~GsELVDWLie~--~v~sReEAv~lGQ~Lld~glI~hV~~~~~F~Dg~~LYR  614 (893)
                      ++..|++...|+.|+||+|++++|++||+|+|||+||+++  .+.+|+||+.+||.|++.|+|+||.++|.|.|+ .||+
T Consensus         3 i~~~m~~~~~Gl~ikdR~~~~~~~p~~F~GsdlVdWL~~~~~~~~~R~eAv~~g~~Ll~~G~i~HV~~~h~F~d~-~yy~   81 (84)
T cd04438           3 IPRVMRRPDSGLEIKDRMWLKITIPNSFIGSDLVDWLLSHVEGLTDRREARKYASSLLKLGYIRHTVNKITFSEQ-CYYV   81 (84)
T ss_pred             hhHhhcCCCCCCceEEEEEeeEECCccccchHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCcEEecCCCccccCC-eEEe
Confidence            3445555677999999999999999999999999999998  478999999999999999999999999999965 8999


Q ss_pred             ec
Q 002682          615 FL  616 (893)
Q Consensus       615 F~  616 (893)
                      |-
T Consensus        82 ~~   83 (84)
T cd04438          82 FG   83 (84)
T ss_pred             cC
Confidence            85

Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.

>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins

Probab=99.75  E-value=7.9e-19  Score=157.62  Aligned_cols=78  Identities=36%  Similarity=0.535  Sum_probs=70.2

Q ss_pred             HHHHHhccCC--ceeeccccceeeecccccchhHHHHHHhh--cccCHHHHHHHHHHHHhcccccccccccccccCCceE
Q 002682          538 ALIVLKMKEN--VVVKDRFYKMRRFTNCFLGSEAVNFLSED--QYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLY  613 (893)
Q Consensus       538 a~iv~~mk~g--i~IKDRr~~LrtYk~CF~GsELVDWLie~--~v~sReEAv~lGQ~Lld~glI~hV~~~~~F~Dg~~LY  613 (893)
                      .+|+++|+..  +.|++|++++++|++||+|+|+|+||+++  .+.+|+||+.+||.|+++|+|+||.++|.|.|+++||
T Consensus         2 ~~i~~~m~~~~~~~i~~r~~~~~~~~~cF~G~e~VdWL~~~~~~~~~r~eAv~lgq~Ll~~g~I~hv~~~~~F~d~~~~Y   81 (83)
T cd04449           2 AEIAEAMRDPSGIGIFDRSWHKGLPSNCFIGSEAVSWLINNFEDVDTREEAVELGQELMNEGLIEHVSGRHPFLDGFYFY   81 (83)
T ss_pred             HHHHHHHhCCCCCceeechhcCccCCcceEhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCEEecCCCCCccCCCEeE
Confidence            3455566543  45999999999999999999999999998  3899999999999999999999999999999999999


Q ss_pred             Ee
Q 002682          614 RF  615 (893)
Q Consensus       614 RF  615 (893)
                      |+
T Consensus        82 r~   83 (83)
T cd04449          82 YI   83 (83)
T ss_pred             eC
Confidence            96

DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=8.3e-18  Score=157.20  Aligned_cols=88  Identities=23%  Similarity=0.378  Sum_probs=80.9

Q ss_pred             CCCCcEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCCh---hHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHhc
Q 002682          422 VMKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP---SRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDES  498 (893)
Q Consensus       422 ~MkgkVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~---e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~es  498 (893)
                      .+.++|+||++++||||+++|.+|...++.+..+++|.++   +.+.+|.+.+|++|||+|||+|++|||+++++++|.+
T Consensus        11 i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~lh~~   90 (104)
T KOG1752|consen   11 ISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMALHKS   90 (104)
T ss_pred             hhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHHHHc
Confidence            4556899999999999999999999999999999998553   7778889999999999999999999999999999999


Q ss_pred             CcchHHHHHHH
Q 002682          499 GKLDEKIEYLI  509 (893)
Q Consensus       499 GeL~~lLk~~~  509 (893)
                      |+|.++|+.+-
T Consensus        91 G~L~~~l~~~~  101 (104)
T KOG1752|consen   91 GELVPLLKEAG  101 (104)
T ss_pred             CCHHHHHHHhh
Confidence            99999998864

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=99.73  E-value=1.1e-17  Score=144.53  Aligned_cols=73  Identities=62%  Similarity=1.074  Sum_probs=70.1

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHh
Q 002682          425 GRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE  497 (893)
Q Consensus       425 gkVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~e  497 (893)
                      ++|+||++++||+|++|+++|+++||+|+++||..+++.++++.+++|..+||+||+||++|||+++|.+|++
T Consensus         1 ~~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~~   73 (73)
T cd03027           1 GRVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLEE   73 (73)
T ss_pred             CEEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhcC
Confidence            5799999999999999999999999999999999999999999999999999999999999999999998864

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=99.73  E-value=1.4e-17  Score=164.34  Aligned_cols=84  Identities=29%  Similarity=0.498  Sum_probs=80.5

Q ss_pred             cEEEEEcC------CChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCC----CCcceEEEcCeeecccHhHHHh
Q 002682          426 RVILYTRL------GCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGS----SAVPKVFFNEILMGGLSELKAL  495 (893)
Q Consensus       426 kVvLYTks------gCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~----~TVPqIFInGk~IGG~DeL~el  495 (893)
                      +|+|||++      +||+|.+||++|++++|+|+++||+.+++.+++|.+++|.    .|||||||+|++|||++++++|
T Consensus         1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L   80 (147)
T cd03031           1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL   80 (147)
T ss_pred             CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence            48999999      9999999999999999999999999999999999999876    8999999999999999999999


Q ss_pred             HhcCcchHHHHHHH
Q 002682          496 DESGKLDEKIEYLI  509 (893)
Q Consensus       496 ~esGeL~~lLk~~~  509 (893)
                      +++|+|.++|+.+.
T Consensus        81 ~e~G~L~~lL~~~~   94 (147)
T cd03031          81 NESGELRKLLKGIR   94 (147)
T ss_pred             HHcCCHHHHHhhcc
Confidence            99999999998873

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=99.73  E-value=1.8e-17  Score=142.26  Aligned_cols=74  Identities=30%  Similarity=0.574  Sum_probs=70.8

Q ss_pred             cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCC-CcceEEEcCeeecccHhHHHhHhcC
Q 002682          426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSS-AVPKVFFNEILMGGLSELKALDESG  499 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~-TVPqIFInGk~IGG~DeL~el~esG  499 (893)
                      +|+||++++||+|.+|+.+|+++||+|+++||+.+++.++++.+.+|.. +||+|||||++|||++++.+++++|
T Consensus         1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~g   75 (75)
T cd03418           1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERKG   75 (75)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhCc
Confidence            4899999999999999999999999999999999888899999988887 9999999999999999999999987

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=1.2e-17  Score=148.74  Aligned_cols=77  Identities=31%  Similarity=0.571  Sum_probs=70.3

Q ss_pred             cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCCh--hHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHhcCcch
Q 002682          426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP--SRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLD  502 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~--e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~esGeL~  502 (893)
                      .|+||++++||||++||++|+++|++|++++++.++  +.++.+++.+|++|||||||||++|||++++.++...|.|+
T Consensus         2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~~~l~   80 (80)
T COG0695           2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAKGKLD   80 (80)
T ss_pred             CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhhccCC
Confidence            499999999999999999999999999999999877  66666666669999999999999999999999999988763

>cd04446 DEP_DEPDC4 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC4-like proteins

Probab=99.71  E-value=5.8e-18  Score=155.69  Aligned_cols=76  Identities=33%  Similarity=0.535  Sum_probs=69.2

Q ss_pred             HHHHhccCCceeeccccceeeecccccchhHHHHHHhhc---------ccCHHHHHHHHHHHHhccccccc-------cc
Q 002682          539 LIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSEDQ---------YLEREEAVEFGRKLASKLFFRHV-------LD  602 (893)
Q Consensus       539 ~iv~~mk~gi~IKDRr~~LrtYk~CF~GsELVDWLie~~---------v~sReEAv~lGQ~Lld~glI~hV-------~~  602 (893)
                      .+++.++.+++|+||+|++++|++||+|+||||||++..         ..+|++|+.+||.||++|+|+||       ..
T Consensus         3 ~ii~~~r~~v~ikdRr~~lk~y~~CF~GsEaVDwL~~~l~~n~~f~~~~~tR~~Av~l~q~Ll~~gvi~~V~~~~~~~~k   82 (95)
T cd04446           3 SIIDALQTQVEVKKRRHNLKSYHDCFLGSEAVDVVLAHLMQNKYFGDVDVPRAKAVRLCQALMDCRVFEAVGTKVFKKKK   82 (95)
T ss_pred             HHHHHHHhcCcccceeeeceecccccchHHHHHHHHHHHhhccccCcccCCHHHHHHHHHHHHHcCCeeeccchhccccc
Confidence            578889999999999999999999999999999997631         45999999999999999999999       56


Q ss_pred             ccccccC-CceEE
Q 002682          603 ENLFEDG-NHLYR  614 (893)
Q Consensus       603 ~~~F~Dg-~~LYR  614 (893)
                      ++.|+|+ ..|||
T Consensus        83 ~~~F~D~~~~lYR   95 (95)
T cd04446          83 RAVFEDSSSSLYR   95 (95)
T ss_pred             cccccCCCcCccC
Confidence            7899999 58997

DEPDC4 is a DEP domain containing protein of unknown function.

>PTZ00062 glutaredoxin; Provisional

Probab=99.69  E-value=7.8e-17  Score=166.70  Aligned_cols=83  Identities=27%  Similarity=0.384  Sum_probs=79.3

Q ss_pred             CcEEEEEc-----CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHhcC
Q 002682          425 GRVILYTR-----LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESG  499 (893)
Q Consensus       425 gkVvLYTk-----sgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~esG  499 (893)
                      ++|+||++     |+||||++++++|+++||+|.++||..+++.+++|.+++|++|||||||||++|||++++++|+++|
T Consensus       113 ~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~l~~~G  192 (204)
T PTZ00062        113 HKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGELIGGHDIIKELYESN  192 (204)
T ss_pred             CCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHHHcC
Confidence            57999999     6999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHH
Q 002682          500 KLDEKIEY  507 (893)
Q Consensus       500 eL~~lLk~  507 (893)
                      +|.++|..
T Consensus       193 ~L~~~l~~  200 (204)
T PTZ00062        193 SLRKVIPD  200 (204)
T ss_pred             Chhhhhhh
Confidence            99998853

>cd04447 DEP_BRCC3 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in BBRC3-like proteins

Probab=99.68  E-value=2.6e-17  Score=149.88  Aligned_cols=79  Identities=25%  Similarity=0.470  Sum_probs=72.6

Q ss_pred             HHHHHHhccCCceeeccccceeeecccccchhHHHHHHhhc--------ccCHHHHHHHHHHHHhccccccccc---ccc
Q 002682          537 LALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSEDQ--------YLEREEAVEFGRKLASKLFFRHVLD---ENL  605 (893)
Q Consensus       537 La~iv~~mk~gi~IKDRr~~LrtYk~CF~GsELVDWLie~~--------v~sReEAv~lGQ~Lld~glI~hV~~---~~~  605 (893)
                      +.++++.|+.|+++++|+++|++|++||+|+||||||++..        ..+|.+|++++|+|+++++|+||.+   .+.
T Consensus         3 Wn~ii~~~r~g~~vk~rR~~lr~y~~CF~gsEAVDwL~~~l~~n~~fg~~vtR~~av~l~qkll~~hVie~V~g~~~~~~   82 (92)
T cd04447           3 WNEVTELFRAGMPLRKHRQHFKSYENCFTASEAVDWLHELLRSNSNFGPEVTRQQTVQLLKKFLKNHVIEDIKGRWGKED   82 (92)
T ss_pred             HHHHHHHHHccCChHHHHHhcccCccccchHHHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCCchhhccccccCc
Confidence            35678889999999999999999999999999999999873        5799999999999999999999965   578


Q ss_pred             cccCCceEEe
Q 002682          606 FEDGNHLYRF  615 (893)
Q Consensus       606 F~Dg~~LYRF  615 (893)
                      |+|++.||||
T Consensus        83 FeD~~~lYRF   92 (92)
T cd04447          83 LEDNNHLYRF   92 (92)
T ss_pred             cccccccccC
Confidence            9999999998

BBRC3, also known as DEPDC1B, is a DEP containing protein of unknown function.

>TIGR02180 GRX_euk Glutaredoxin

Probab=99.67  E-value=1.4e-16  Score=138.59  Aligned_cols=79  Identities=29%  Similarity=0.521  Sum_probs=72.2

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCc--eEEEEcCCC---hhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHhcCcc
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLR--YVEINIDVY---PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKL  501 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~--YeeIDId~d---~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~esGeL  501 (893)
                      |++|+++|||+|.+++.+|.+++++  |+.++|+.+   .+.++++.+.+|..++|+||+||++|||++++.+++++|+|
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~g~l   80 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKSGKL   80 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCh
Confidence            6899999999999999999999999  888888754   45567788899999999999999999999999999999999


Q ss_pred             hHHH
Q 002682          502 DEKI  505 (893)
Q Consensus       502 ~~lL  505 (893)
                      ..+|
T Consensus        81 ~~~~   84 (84)
T TIGR02180        81 AELL   84 (84)
T ss_pred             hhhC
Confidence            8764

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=99.67  E-value=2.2e-16  Score=135.88  Aligned_cols=70  Identities=27%  Similarity=0.428  Sum_probs=64.9

Q ss_pred             cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhH
Q 002682          426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD  496 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~  496 (893)
                      +|+||++++||+|.+|+++|+++|++|+++||+.++. ..++...+|..+||+|||||++|||+++|.++.
T Consensus         2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~-~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l   71 (72)
T cd03029           2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDIT-GRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYF   71 (72)
T ss_pred             eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChh-HHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHh
Confidence            5999999999999999999999999999999988774 557888899999999999999999999998875

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=99.65  E-value=4e-16  Score=135.67  Aligned_cols=78  Identities=24%  Similarity=0.440  Sum_probs=71.9

Q ss_pred             cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCC---hhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHhcCcch
Q 002682          426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVY---PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLD  502 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d---~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~esGeL~  502 (893)
                      +|++|++++||+|.+|+.+|++++++|+.++++.+   .+.+.++.+++|..++|+||++|++|||++++.++.++|+|.
T Consensus         1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~g~l~   80 (82)
T cd03419           1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKSGKLV   80 (82)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCcc
Confidence            48999999999999999999999999999988755   445778999999999999999999999999999999999997


Q ss_pred             H
Q 002682          503 E  503 (893)
Q Consensus       503 ~  503 (893)
                      +
T Consensus        81 ~   81 (82)
T cd03419          81 K   81 (82)
T ss_pred             C
Confidence            5

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=99.65  E-value=5.8e-16  Score=136.40  Aligned_cols=72  Identities=28%  Similarity=0.440  Sum_probs=65.4

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhH
Q 002682          424 KGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD  496 (893)
Q Consensus       424 kgkVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~  496 (893)
                      +.+|+||++++||+|.+||++|+++||+|+++||+.++.. .++...+|..+||+||+||++|||+++|.++.
T Consensus         7 ~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~-~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l   78 (79)
T TIGR02190         7 PESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARG-RSLRAVTGATTVPQVFIGGKLIGGSDELEAYL   78 (79)
T ss_pred             CCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHH-HHHHHHHCCCCcCeEEECCEEEcCHHHHHHHh
Confidence            3469999999999999999999999999999999887664 56778899999999999999999999998864

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=99.65  E-value=5.2e-16  Score=137.92  Aligned_cols=73  Identities=23%  Similarity=0.438  Sum_probs=67.7

Q ss_pred             cEEEEEcCCChhHHHHHHHHHh-----cCCceEEEEcCCChhHHHHHHHHhCC--CCcceEEEcCeeecccHhHHHhHhc
Q 002682          426 RVILYTRLGCQESREVRLFLYW-----KRLRYVEINIDVYPSRKMELEKFAGS--SAVPKVFFNEILMGGLSELKALDES  498 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e-----~GI~YeeIDId~d~e~r~EL~k~sG~--~TVPqIFInGk~IGG~DeL~el~es  498 (893)
                      +|+||++++||+|++|+++|++     .|++|+++||+.++..++++.+.+|.  .+||||||||++|||+++|.++++.
T Consensus         2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~~~   81 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVKE   81 (85)
T ss_pred             EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHHHH
Confidence            3999999999999999999999     89999999999887778889888886  8999999999999999999998864

>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways

Probab=99.65  E-value=1.7e-16  Score=137.93  Aligned_cols=69  Identities=45%  Similarity=0.804  Sum_probs=64.6

Q ss_pred             CceeeccccceeeecccccchhHHHHHHhh---cccCHHHHHHHHHHHHhccccccccccc-ccccC-CceEEe
Q 002682          547 NVVVKDRFYKMRRFTNCFLGSEAVNFLSED---QYLEREEAVEFGRKLASKLFFRHVLDEN-LFEDG-NHLYRF  615 (893)
Q Consensus       547 gi~IKDRr~~LrtYk~CF~GsELVDWLie~---~v~sReEAv~lGQ~Lld~glI~hV~~~~-~F~Dg-~~LYRF  615 (893)
                      |+++++|++++++|++||+|+|+|+||+++   .+.+|+||+.+||.|++.|+|+||.+.+ .|.|+ +.||||
T Consensus         1 Gv~i~~~~~~~~~~~~~F~G~e~v~WL~~~~~~~~~~r~eA~~l~q~Ll~~g~i~~v~~~~~~F~d~~~~~Yrf   74 (74)
T PF00610_consen    1 GVPIKDRRKRLKTYPNCFTGSEAVDWLMDNFEGFVRDREEAVQLGQELLDHGFIEHVSDKSKQFKDSKNSLYRF   74 (74)
T ss_dssp             SSCSEEEECSSEEECCEEEHHHHHHHHHHTSCTSTSSHHHHHHHHHHHHHCTSEEESSSSSHSS-SSSSSEEEE
T ss_pred             CCccEEEEECCEEcCCEeEhHHHHHHHHHhccccccCHHHHHHHHHHHHHCCCEEECCCCCCCEECCCCcEEEC
Confidence            789999999999999999999999999985   3899999999999999999999999988 79999 899998

It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=99.63  E-value=9.3e-16  Score=137.56  Aligned_cols=73  Identities=25%  Similarity=0.454  Sum_probs=66.1

Q ss_pred             EEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCC--CCcceEEEcCeeecccHhHHHhHhcC
Q 002682          427 VILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGS--SAVPKVFFNEILMGGLSELKALDESG  499 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~-----GI~YeeIDId~d~e~r~EL~k~sG~--~TVPqIFInGk~IGG~DeL~el~esG  499 (893)
                      |+||+++|||||.+|+++|+++     +++|+++||+.+...++++.+.+|.  .+||+|||||++|||+++|.++++++
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~   81 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKEN   81 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhc
Confidence            7999999999999999999998     4679999998776667788888887  89999999999999999999998764

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins

Probab=99.62  E-value=1.9e-16  Score=148.53  Aligned_cols=86  Identities=22%  Similarity=0.307  Sum_probs=76.9

Q ss_pred             cHHHHHHHHHhccCCceeeccccceeeecccccchhHHHHHHhh-cccCHHHHHHHHHHHHhccccccccc---------
Q 002682          533 AIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLD---------  602 (893)
Q Consensus       533 ~l~eLa~iv~~mk~gi~IKDRr~~LrtYk~CF~GsELVDWLie~-~v~sReEAv~lGQ~Lld~glI~hV~~---------  602 (893)
                      +|.+|+.-|+....|+.+.+|+|++++|++||+|+++||||+++ ...+|.||+.+||.||+.|+|+||..         
T Consensus         1 ~L~~L~~~mq~~~~Gik~~~~r~~~k~y~~CF~Gse~VDWLv~~~~~i~R~EAv~l~q~Lmd~gli~hV~~~s~~~~~~~   80 (109)
T cd04444           1 SLHRIVDKMHDSSTGIRHSPNMEQGSTYKKTFLGSALVDWLISNSFAASRLEAVTLASMLMEENFLRPVGVRSMGAIRSG   80 (109)
T ss_pred             CHHHHHHHHhCCCcCcchhhhhhccccccccccchHHHHHHHHCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhhhhhcc
Confidence            46788888888888999999999999999999999999999999 56799999999999999999999952         


Q ss_pred             --ccccccCC-ceEEecCC
Q 002682          603 --ENLFEDGN-HLYRFLDH  618 (893)
Q Consensus       603 --~~~F~Dg~-~LYRF~~d  618 (893)
                        .+.|.|++ .||||.+.
T Consensus        81 ~~~~~f~d~s~aly~F~~~   99 (109)
T cd04444          81 DLAEQFLDDSTALYTFAES   99 (109)
T ss_pred             ccccccccCchHHHHhHHH
Confidence              45788775 99999863

Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.

>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin

Probab=99.60  E-value=1.1e-15  Score=133.82  Aligned_cols=72  Identities=36%  Similarity=0.730  Sum_probs=68.2

Q ss_pred             cCCceeeccccceeeecccccchhHHHHHHhh-cccCHHHHHHHHHHHHhcccccccc--cccccccCCceEEec
Q 002682          545 KENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVL--DENLFEDGNHLYRFL  616 (893)
Q Consensus       545 k~gi~IKDRr~~LrtYk~CF~GsELVDWLie~-~v~sReEAv~lGQ~Lld~glI~hV~--~~~~F~Dg~~LYRF~  616 (893)
                      ..|+++++|++++++|++||+|.|+|+||+++ .+.+|.||+++||.|++.|+|+||.  ..+.|.|+..||||+
T Consensus         2 ~~gl~~~~~~~~~~~~~~~F~G~e~v~wL~~~~~~~~r~eA~~l~~~ll~~g~i~~v~~~~~~~F~d~~~~Yrf~   76 (77)
T smart00049        2 ETGLKLRDRKYFLKTYPNCFTGSELVDWLMDNLEIIDREEAVHLGQLLLDEGLIHHVNGPNKHTFKDSKALYRFT   76 (77)
T ss_pred             CCCcccEEEEECCEECcceeEcHHHHHHHHHcCCcCCHHHHHHHHHHHHHCCCEEEeCCCCcCccccCCEEEEeC
Confidence            46889999999999999999999999999999 5689999999999999999999999  689999999999997

Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).

>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=2.3e-15  Score=138.75  Aligned_cols=84  Identities=17%  Similarity=0.341  Sum_probs=78.9

Q ss_pred             CcEEEEEc-----CCChhHHHHHHHHHhcC-CceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHhc
Q 002682          425 GRVILYTR-----LGCQESREVRLFLYWKR-LRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDES  498 (893)
Q Consensus       425 gkVvLYTk-----sgCP~CkrAK~lL~e~G-I~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~es  498 (893)
                      ++|++|.|     |.|+|+.+|.++|..+| ++|..+||..+++.|+.+++.++|+|+||+||||++|||+|.+.+|+++
T Consensus        15 n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~Em~q~   94 (105)
T COG0278          15 NPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVREMYQS   94 (105)
T ss_pred             CceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEeccHHHHHHHHHc
Confidence            46777776     67999999999999999 8999999999999999999999999999999999999999999999999


Q ss_pred             CcchHHHHHH
Q 002682          499 GKLDEKIEYL  508 (893)
Q Consensus       499 GeL~~lLk~~  508 (893)
                      |+|+++|++.
T Consensus        95 GELq~~l~~~  104 (105)
T COG0278          95 GELQTLLKEA  104 (105)
T ss_pred             chHHHHHHhc
Confidence            9999999764

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=99.59  E-value=5e-15  Score=123.18  Aligned_cols=72  Identities=28%  Similarity=0.532  Sum_probs=68.6

Q ss_pred             cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHh
Q 002682          426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE  497 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~e  497 (893)
                      +|+||++++||+|++++.+|.+++++|.++|+..+++.+++|.+++|..++|+||+||++|||+++++++++
T Consensus         1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~~   72 (72)
T cd02066           1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKALHE   72 (72)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhhC
Confidence            489999999999999999999999999999999999889999999999999999999999999999998863

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>cd04450 DEP_RGS7-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in RGS (regulator of G-protein signaling) proteins of the subfamily R7

Probab=99.57  E-value=2.8e-15  Score=135.98  Aligned_cols=76  Identities=18%  Similarity=0.267  Sum_probs=70.3

Q ss_pred             HHhccCCceeeccccceeeecccccchhHHHHHHhh-cccCHHHHHHHHHHHHhcccccccccccc-cccCCceEEec
Q 002682          541 VLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLDENL-FEDGNHLYRFL  616 (893)
Q Consensus       541 v~~mk~gi~IKDRr~~LrtYk~CF~GsELVDWLie~-~v~sReEAv~lGQ~Lld~glI~hV~~~~~-F~Dg~~LYRF~  616 (893)
                      +.....|+.+++|++++++|++||+|+++|+||+++ .+.+|+||+++|+.|++.|+|+||.+.+. |.|++++|||+
T Consensus         6 ~~~~~~Gv~~~~~r~~~~~~~~~F~G~~~v~WL~~~~~~~~~~EA~~~~~~ll~~gli~~V~~~~~~~~~~~~~yr~~   83 (88)
T cd04450           6 MQDSEVGVRMRTEKSFLTTVPYAFTGKAIVQWLMDCTDVVDPSEALEIAALFVKYGLITPVSDHRSLLKPDETLYRFQ   83 (88)
T ss_pred             hcCCCCCeeeeeeEEeeeEcCceeEhHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEecCCcccccCCCceEecc
Confidence            445577999999999999999999999999999998 57999999999999999999999998765 88999999998

This subgroup contains RGS7, RGS6, RGS9 and RGS11. They share a common domain architecture, containing, beside the RGS domain, a DEP domain and a GGL (G-protein gamma subunit-like ) domain. RGS proteins are GTPase-activating (GAP) proteins of heterotrimeric G proteins by increasing the rate of GTP hydrolysis of the alpha subunit. The fungal homologs, like yeast Sst2, share a related common domain architecture, containing RGS and DEP domains. Sst2 has been identified as the principal regulator of mating pheromone signaling and recently the DEP domain of Sst2 has been shown to be necessary and sufficient to mediate receptor interaction.

>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif

Probab=99.56  E-value=1.1e-14  Score=133.55  Aligned_cols=80  Identities=18%  Similarity=0.299  Sum_probs=73.9

Q ss_pred             EEEEEcCC------ChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCC----CCcceEEEcCeeecccHhHHHhH
Q 002682          427 VILYTRLG------CQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGS----SAVPKVFFNEILMGGLSELKALD  496 (893)
Q Consensus       427 VvLYTksg------CP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~----~TVPqIFInGk~IGG~DeL~el~  496 (893)
                      |+||+++-      =..|.+++.+|+.+||+|+++||+.+++.+++|.+.+|.    +|||||||||+|||||+++.+++
T Consensus         2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l~   81 (92)
T cd03030           2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEAK   81 (92)
T ss_pred             EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence            78888774      346999999999999999999999999999999999864    99999999999999999999999


Q ss_pred             hcCcchHHHH
Q 002682          497 ESGKLDEKIE  506 (893)
Q Consensus       497 esGeL~~lLk  506 (893)
                      ++|+|+++|+
T Consensus        82 e~g~L~~lLk   91 (92)
T cd03030          82 ENNTLEEFLK   91 (92)
T ss_pred             hCCCHHHHhC
Confidence            9999999885

The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=99.54  E-value=1.2e-14  Score=164.11  Aligned_cols=83  Identities=19%  Similarity=0.348  Sum_probs=72.0

Q ss_pred             CCCcEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHH--------HhCCCCcceEEEcCeeecccHhHHH
Q 002682          423 MKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEK--------FAGSSAVPKVFFNEILMGGLSELKA  494 (893)
Q Consensus       423 MkgkVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k--------~sG~~TVPqIFInGk~IGG~DeL~e  494 (893)
                      |+ +|+|||+++||+|++||++|+++||+|+++||+.++...+.+.+        .+|.+|||||||||++||||+++++
T Consensus         1 m~-~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~   79 (410)
T PRK12759          1 MV-EVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA   79 (410)
T ss_pred             CC-cEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence            44 79999999999999999999999999999999987754432222        3689999999999999999999987


Q ss_pred             hHhcCcchHHHHHH
Q 002682          495 LDESGKLDEKIEYL  508 (893)
Q Consensus       495 l~esGeL~~lLk~~  508 (893)
                        .+|+|.++|+.+
T Consensus        80 --~~g~l~~~~~~~   91 (410)
T PRK12759         80 --RAGEVIARVKGS   91 (410)
T ss_pred             --HhCCHHHHhcCC
Confidence              899999998663

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=99.54  E-value=1.9e-14  Score=119.91  Aligned_cols=60  Identities=30%  Similarity=0.615  Sum_probs=58.4

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeee
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILM  486 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~I  486 (893)
                      |+||++++||+|.+++++|+++|++|+++||+.+++.++++.+.+|..++|+|||||++|
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I   60 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI   60 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred             cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence            789999999999999999999999999999999999999999999999999999999986

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>cd04371 DEP DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered

Probab=99.52  E-value=1.5e-14  Score=127.17  Aligned_cols=77  Identities=40%  Similarity=0.713  Sum_probs=70.4

Q ss_pred             HHHHHhccCCceeeccccceeeecccccchhHHHHHHhh-cccCHHHHHHHHHHHHhccccccccc-ccccccCCceEE
Q 002682          538 ALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLD-ENLFEDGNHLYR  614 (893)
Q Consensus       538 a~iv~~mk~gi~IKDRr~~LrtYk~CF~GsELVDWLie~-~v~sReEAv~lGQ~Lld~glI~hV~~-~~~F~Dg~~LYR  614 (893)
                      ...+..+..++.+++|++++++|++||+|+|+|+||+++ ...+|.+|+.+||.|++.|||+||.+ .+.|.|++.||+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~F~G~e~v~WL~~~~~~~~r~ea~~~~~~ll~~g~i~~v~~~~~~F~d~~~~Y~   81 (81)
T cd04371           3 VRIMLDSDSGVPIKDRKYHLKTYPNCFTGSELVDWLLDNLEAITREEAVELGQALLKHGLIHHVSDDKHTFRDSYALYR   81 (81)
T ss_pred             HHHhhccCCCCccEEEEECCEECCceeEcHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEeCCCCCccccCCeecC
Confidence            445666777899999999999999999999999999998 46899999999999999999999998 999999988885

The function of this domain is still not clear, but it is believed to be important for the membrane association of the signaling proteins in which it is present. New studies show that the DEP domain of Sst2, a yeast RGS protein is necessary and sufficient for receptor interaction.

>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins

Probab=99.44  E-value=9.4e-14  Score=127.37  Aligned_cols=84  Identities=23%  Similarity=0.386  Sum_probs=75.6

Q ss_pred             HHHHHHHHHhccCCceeeccccceeeecccccchhHHHHHHhh-cccCHHHHHHHHHHHHhccccccccc----------
Q 002682          534 IDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLD----------  602 (893)
Q Consensus       534 l~eLa~iv~~mk~gi~IKDRr~~LrtYk~CF~GsELVDWLie~-~v~sReEAv~lGQ~Lld~glI~hV~~----------  602 (893)
                      +.++..-|++...||..++++...++|++||+|+++||||+.+ .+.+|+||+.+|+.|++.|||+|+.+          
T Consensus         2 L~~lv~sMqDp~~GIk~~~~~~~~tv~~hcftGsdVVdWLv~~~~v~~r~EAl~las~Ll~eGyL~P~gd~sk~a~~~~~   81 (99)
T cd04445           2 LSALYLSMKDPEKGIKELNLEKDKKVFNHCFTGSCVIDWLVSNQSVRNRQEGLMLASSLLNEGYLQPAGDTSKNAADGLA   81 (99)
T ss_pred             HHHHHHHHhCcccchhhhhHHHhhccccceecccHHHHHHHHhhcccchHHHHHHHHHHHHcCCeeecCccchhHhhccc
Confidence            5677888888899999999999999999999999999999999 57789999999999999999999954          


Q ss_pred             ccccccC-CceEEecC
Q 002682          603 ENLFEDG-NHLYRFLD  617 (893)
Q Consensus       603 ~~~F~Dg-~~LYRF~~  617 (893)
                      +..|.|+ ..||+|.+
T Consensus        82 ~~~fld~~~aly~f~d   97 (99)
T cd04445          82 ENPFLDNPDAFYYFPD   97 (99)
T ss_pred             cccccCCccceeeccc
Confidence            4588876 58999975

Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.

>PRK10329 glutaredoxin-like protein; Provisional

Probab=99.44  E-value=3.1e-13  Score=120.70  Aligned_cols=65  Identities=22%  Similarity=0.408  Sum_probs=60.9

Q ss_pred             cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHh
Q 002682          426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSE  491 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~De  491 (893)
                      +|+||++++||+|.++|++|+++||+|+++||+.+++.++++.. .|..+||+|+++|..|+||+.
T Consensus         2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~g~~~vPvv~i~~~~~~Gf~~   66 (81)
T PRK10329          2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-QGFRQLPVVIAGDLSWSGFRP   66 (81)
T ss_pred             EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCCCcCEEEECCEEEecCCH
Confidence            49999999999999999999999999999999999988888876 599999999999999999974

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=99.43  E-value=2.4e-13  Score=117.47  Aligned_cols=64  Identities=20%  Similarity=0.320  Sum_probs=58.9

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCe-eecccHh
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEI-LMGGLSE  491 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk-~IGG~De  491 (893)
                      |+||++++||+|++|+++|+++||+|+++||+.+++.++++.. .|..+||+|+++|. +||||+.
T Consensus         1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~-~g~~~vP~v~~~g~~~~~G~~~   65 (72)
T TIGR02194         1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKA-QGFRQVPVIVADGDLSWSGFRP   65 (72)
T ss_pred             CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCcccCEEEECCCcEEeccCH
Confidence            5899999999999999999999999999999999988888876 59999999999775 9999974

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=1.3e-12  Score=135.91  Aligned_cols=83  Identities=22%  Similarity=0.384  Sum_probs=78.5

Q ss_pred             CcEEEEEc-----CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHhcC
Q 002682          425 GRVILYTR-----LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESG  499 (893)
Q Consensus       425 gkVvLYTk-----sgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~esG  499 (893)
                      .+|+||.|     |.|+|++++..+|+++|++|..+||..|+++|+-+++++.|+|+||+||+|+++||+|.+.+|+++|
T Consensus       139 ~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m~~~g  218 (227)
T KOG0911|consen  139 KPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEMHEKG  218 (227)
T ss_pred             CeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEeccCcHHHHHHhhcc
Confidence            46778876     5799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHH
Q 002682          500 KLDEKIEY  507 (893)
Q Consensus       500 eL~~lLk~  507 (893)
                      +|...|++
T Consensus       219 eL~~~l~~  226 (227)
T KOG0911|consen  219 ELVYTLKE  226 (227)
T ss_pred             cHHHHhhc
Confidence            99988865

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=99.21  E-value=5.1e-11  Score=99.78  Aligned_cols=65  Identities=22%  Similarity=0.414  Sum_probs=61.2

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHh
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSE  491 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~De  491 (893)
                      |+||+.+|||+|++++.+|.+.+++|..+|++.++...+++.+.+|..+||+++++|+.++|++.
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~   66 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFDP   66 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCCH
Confidence            89999999999999999999999999999999888888888899999999999999999999753

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=99.11  E-value=2.9e-10  Score=95.16  Aligned_cols=66  Identities=26%  Similarity=0.487  Sum_probs=61.6

Q ss_pred             cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHh
Q 002682          426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSE  491 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~De  491 (893)
                      .|++|+.+|||+|.+++.+|.+.+++|..++++.++...+++.+.++..+||+|+++|+.|+|++.
T Consensus         1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~~~   66 (73)
T cd02976           1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSGFRP   66 (73)
T ss_pred             CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEecCCH
Confidence            389999999999999999999999999999999888888889888899999999999999999875

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=99.00  E-value=1e-09  Score=93.79  Aligned_cols=65  Identities=17%  Similarity=0.188  Sum_probs=57.4

Q ss_pred             cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHh-CCCCcceEEE-cCeeecccH
Q 002682          426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA-GSSAVPKVFF-NEILMGGLS  490 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~s-G~~TVPqIFI-nGk~IGG~D  490 (893)
                      +|+||+.+|||+|++++.+|.++|++|+.+|++.++...+++.+++ |..+||+|++ ||+.+....
T Consensus         1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~   67 (77)
T TIGR02200         1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPS   67 (77)
T ss_pred             CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCC
Confidence            4899999999999999999999999999999998888888888887 8999999987 567766543

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=9.1e-10  Score=117.60  Aligned_cols=85  Identities=27%  Similarity=0.452  Sum_probs=79.6

Q ss_pred             CcEEEEEcC------CChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCC----CCcceEEEcCeeecccHhHHH
Q 002682          425 GRVILYTRL------GCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGS----SAVPKVFFNEILMGGLSELKA  494 (893)
Q Consensus       425 gkVvLYTks------gCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~----~TVPqIFInGk~IGG~DeL~e  494 (893)
                      .+|+||+++      +--.|..|+.+|+..+|.|.+.||..+...++||..+.|.    .++|+|||+|++|||.+++++
T Consensus       131 ~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~~  210 (281)
T KOG2824|consen  131 DRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVR  210 (281)
T ss_pred             ceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhhh
Confidence            379999986      6788999999999999999999999999999999998865    688999999999999999999


Q ss_pred             hHhcCcchHHHHHHH
Q 002682          495 LDESGKLDEKIEYLI  509 (893)
Q Consensus       495 l~esGeL~~lLk~~~  509 (893)
                      |++.|+|.++|+.+.
T Consensus       211 LnE~GkL~~lL~~~p  225 (281)
T KOG2824|consen  211 LNEEGKLGKLLKGIP  225 (281)
T ss_pred             hhhcchHHHHHhcCC
Confidence            999999999998876

>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised

Probab=98.96  E-value=2.6e-09  Score=99.64  Aligned_cols=80  Identities=19%  Similarity=0.363  Sum_probs=64.2

Q ss_pred             EEEEEcCCCh------hHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhC---------CCCcceEEEcCeeecccHh
Q 002682          427 VILYTRLGCQ------ESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAG---------SSAVPKVFFNEILMGGLSE  491 (893)
Q Consensus       427 VvLYTksgCP------~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG---------~~TVPqIFInGk~IGG~De  491 (893)
                      |.||+++.-+      .|.++..+|+.++|+|+++||..+++.|+.|++..|         ....||||+||+++|+|++
T Consensus         3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye~   82 (99)
T PF04908_consen    3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYED   82 (99)
T ss_dssp             EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHHH
T ss_pred             EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHHH
Confidence            8899977544      478999999999999999999999999999999874         4566899999999999999


Q ss_pred             HHHhHhcCcchHHHH
Q 002682          492 LKALDESGKLDEKIE  506 (893)
Q Consensus       492 L~el~esGeL~~lLk  506 (893)
                      +.++.+.|+|.++|+
T Consensus        83 f~ea~E~~~L~~fL~   97 (99)
T PF04908_consen   83 FEEANENGELEEFLK   97 (99)
T ss_dssp             HHHHHCTT-HHHHHT
T ss_pred             HHHHHhhCHHHHHhC
Confidence            999999999999885

SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=98.81  E-value=8.6e-09  Score=87.00  Aligned_cols=58  Identities=14%  Similarity=0.172  Sum_probs=50.5

Q ss_pred             cEEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeec
Q 002682          426 RVILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMG  487 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e~-----GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IG  487 (893)
                      +|++|+++|||+|.+++.+|++.     +++|..+|++.+++    +.+.+|..++|+|++||++++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~----l~~~~~i~~vPti~i~~~~~~   64 (67)
T cd02973           2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPD----LADEYGVMSVPAIVINGKVEF   64 (67)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh----HHHHcCCcccCEEEECCEEEE
Confidence            48999999999999999999875     68999999987654    455679999999999998875

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>KOG3571 consensus Dishevelled 3 and related proteins [General function prediction only]

Probab=98.74  E-value=7.9e-09  Score=117.04  Aligned_cols=81  Identities=26%  Similarity=0.527  Sum_probs=70.9

Q ss_pred             HHHHHHHhc---cCCceeeccccceeeecccccchhHHHHHHhh--cccCHHHHHHHHHHHHhcccccccccccccccCC
Q 002682          536 ELALIVLKM---KENVVVKDRFYKMRRFTNCFLGSEAVNFLSED--QYLEREEAVEFGRKLASKLFFRHVLDENLFEDGN  610 (893)
Q Consensus       536 eLa~iv~~m---k~gi~IKDRr~~LrtYk~CF~GsELVDWLie~--~v~sReEAv~lGQ~Lld~glI~hV~~~~~F~Dg~  610 (893)
                      .|+.++++|   ..|+.||||.|...+.++.|+|+|||+||.+|  +..+|.+|..|+..|+..|||+|+.+...|...+
T Consensus       392 d~~~vvraMa~pdSGLeirdRmWlKItIPnafiGsDlVdWL~~hVeg~~~RkeAR~yAs~lLk~g~IrHtVnK~TFtEqC  471 (626)
T KOG3571|consen  392 DMIIVVRAMARPDSGLEIRDRMWLKITIPNAFIGSDLVDWLVDHVEGLHERKEARKYASRLLKAGYIRHTVNKLTFTEQC  471 (626)
T ss_pred             cHHHHHHhhcCCCCcceeccceeeeeecchhhcchhHHHHHHHHhhhhhhHHHHHHHHHHHHHhCchhhcccceeeeeee
Confidence            455555555   66999999999999999999999999999999  6899999999999999999999999999997554


Q ss_pred             ceEEecC
Q 002682          611 HLYRFLD  617 (893)
Q Consensus       611 ~LYRF~~  617 (893)
                       ||-|-+
T Consensus       472 -YYVfGD  477 (626)
T KOG3571|consen  472 -YYVFGD  477 (626)
T ss_pred             -EEEecc
Confidence             567764

>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins

Probab=98.70  E-value=6.2e-08  Score=84.76  Aligned_cols=71  Identities=17%  Similarity=0.061  Sum_probs=61.2

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeecccHhHHHhHh
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGLSELKALDE  497 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~IGG~DeL~el~e  497 (893)
                      ++||+.++||+|.+++.+|..+|++|+.++|........++.+.++..+||++..  +|..+.+...+.++.+
T Consensus         2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~   74 (77)
T cd03041           2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLF   74 (77)
T ss_pred             ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHH
Confidence            6899999999999999999999999999999866655678888899999999987  3677888777776654

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.61  E-value=9.6e-08  Score=77.93  Aligned_cols=69  Identities=22%  Similarity=0.162  Sum_probs=59.0

Q ss_pred             EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhH
Q 002682          428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD  496 (893)
Q Consensus       428 vLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~  496 (893)
                      +||+.++||+|.+++.+|+.+|++|+.++++.......++.+.++..++|+++++|..+++...+.+..
T Consensus         2 ~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl   70 (71)
T cd00570           2 KLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEYL   70 (71)
T ss_pred             EEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHh
Confidence            689999999999999999999999999998755433336778889999999999999999887766553

In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma

>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=98.56  E-value=2.9e-07  Score=79.73  Aligned_cols=69  Identities=19%  Similarity=0.306  Sum_probs=56.7

Q ss_pred             cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEc----CeeecccHhHHHhHh
Q 002682          426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFN----EILMGGLSELKALDE  497 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFIn----Gk~IGG~DeL~el~e  497 (893)
                      +|+||+.++||+|.+++.+|..+||+|+.++++.  ..+.++ +.++..+||+++++    |..+.....+.++.+
T Consensus         1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~--~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~   73 (77)
T cd03040           1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNP--VSRKEI-KWSSYKKVPILRVESGGDGQQLVDSSVIISTLK   73 (77)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCc--hhHHHH-HHhCCCccCEEEECCCCCccEEEcHHHHHHHHH
Confidence            4899999999999999999999999999999853  223444 45789999999987    777877777766554

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.

>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.54  E-value=3.7e-07  Score=82.23  Aligned_cols=79  Identities=18%  Similarity=0.145  Sum_probs=63.9

Q ss_pred             CCCcCCCCCcEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEc-CeeecccHhHHHh
Q 002682          417 PPQPLVMKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFN-EILMGGLSELKAL  495 (893)
Q Consensus       417 ~~~~~~MkgkVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFIn-Gk~IGG~DeL~el  495 (893)
                      .+....+.+.+++|+.+.||+|.+++.+|..+|++|+.++++... ...++.+.++..+||++.++ |..+.....+.++
T Consensus         9 ~~~~~~~~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~-~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~y   87 (89)
T cd03055           9 SAEPPPVPGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKD-KPDWFLEKNPQGKVPALEIDEGKVVYESLIICEY   87 (89)
T ss_pred             CCCCCCCCCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCC-CcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHh
Confidence            334445666799999999999999999999999999999987543 23567788899999999998 7888777766655


Q ss_pred             H
Q 002682          496 D  496 (893)
Q Consensus       496 ~  496 (893)
                      .
T Consensus        88 L   88 (89)
T cd03055          88 L   88 (89)
T ss_pred             h
Confidence            3

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega

>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E

Probab=98.49  E-value=4.1e-07  Score=77.78  Aligned_cols=68  Identities=16%  Similarity=0.166  Sum_probs=57.1

Q ss_pred             EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEc-CeeecccHhHHHhHh
Q 002682          428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFN-EILMGGLSELKALDE  497 (893)
Q Consensus       428 vLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFIn-Gk~IGG~DeL~el~e  497 (893)
                      ++|+.++||+|.+++.+|..+|++|+.+.++..+..  ...+.++..+||+++++ |..+++...+.++.+
T Consensus         2 ~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~--~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~   70 (71)
T cd03037           2 KLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDEA--TPIRMIGAKQVPILEKDDGSFMAESLDIVAFID   70 (71)
T ss_pred             ceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCchH--HHHHhcCCCccCEEEeCCCeEeehHHHHHHHHh
Confidence            489999999999999999999999999998754322  23456788899999997 899999998887764

coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.

>KOG3572 consensus Uncharacterized conserved protein, contains DEP domain [Signal transduction mechanisms]

Probab=98.47  E-value=1.2e-07  Score=115.86  Aligned_cols=88  Identities=25%  Similarity=0.381  Sum_probs=82.2

Q ss_pred             ccHHHHHHHHHhccCCceeeccccceeeecccccchhHHHHHHhh--cccCHHHHHHHHHH--HHhcccccccccccccc
Q 002682          532 GAIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED--QYLEREEAVEFGRK--LASKLFFRHVLDENLFE  607 (893)
Q Consensus       532 ~~l~eLa~iv~~mk~gi~IKDRr~~LrtYk~CF~GsELVDWLie~--~v~sReEAv~lGQ~--Lld~glI~hV~~~~~F~  607 (893)
                      ..+..|+.+++.|+. +.++++.||.+.|..||+|+|.|.||+.+  .+.+|++|+.+||+  ++..|+++|+...|.|.
T Consensus      1271 a~lStLtk~lq~m~~-~klq~~~wh~~~~e~CF~gsE~VnWL~n~f~gI~Tre~AikygqK~~e~qlglf~hal~kh~fl 1349 (1701)
T KOG3572|consen 1271 AWLSTLTKLLQLMND-IKLQYQGWHPDPNELCFRGSEWVNWLQNYFAGIETREKAIKYGQKTNEKQLGLFHHALMKHVFL 1349 (1701)
T ss_pred             hhHHHHHHHHhccCC-CceeeecccCCcchhhhhhHHHHHHHHHhhhhhhhHHHHHHHHhhhhHHHhhhhhhhhhcceec
Confidence            467889999999988 99999999999999999999999999998  58999999999999  99999999999999999


Q ss_pred             cCCceEEecCCCC
Q 002682          608 DGNHLYRFLDHDP  620 (893)
Q Consensus       608 Dg~~LYRF~~ddP  620 (893)
                      ||.++|++..+..
T Consensus      1350 dG~YfY~ivpeys 1362 (1701)
T KOG3572|consen 1350 DGLYFYYIVPEYS 1362 (1701)
T ss_pred             cceEEEEeccccc
Confidence            9999999998643

>cd04436 DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGAP (GTPase-activator protein) Rgd2-like proteins

Probab=98.33  E-value=5.2e-07  Score=81.90  Aligned_cols=78  Identities=24%  Similarity=0.360  Sum_probs=65.3

Q ss_pred             HHHHHHhccCCceeeccccce-eeecccccchhHHHHHHhh-cccCHHHHHHHHHHHHhccccccccc-ccccccCC-ce
Q 002682          537 LALIVLKMKENVVVKDRFYKM-RRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLD-ENLFEDGN-HL  612 (893)
Q Consensus       537 La~iv~~mk~gi~IKDRr~~L-rtYk~CF~GsELVDWLie~-~v~sReEAv~lGQ~Lld~glI~hV~~-~~~F~Dg~-~L  612 (893)
                      |.+++.+|=..+++.+|+.-+ -+|.+||+|+++|+||+++ ...++..|-.|||.|++.|||+.|.. ...|.++. .+
T Consensus         2 lk~lL~~ml~~ip~~~~kvPilGty~nt~sG~~Iv~~L~~n~~~~s~~~aE~fGQdLv~~gfir~~g~vG~~F~nSs~~~   81 (84)
T cd04436           2 LKELLAAMLKEIPLADYKVPILGTYQNTSSGSEIVSWLQENMPEKDLDAAEAFGQDLLNQGFLRLVGGVGSTFVNSSKFQ   81 (84)
T ss_pred             HHHHHHHHHHhCCCccceecccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCchHHHhcccCcceecCccce
Confidence            556777888888888887654 4899999999999999999 57899999999999999999999985 56777654 55


Q ss_pred             EE
Q 002682          613 YR  614 (893)
Q Consensus       613 YR  614 (893)
                      |+
T Consensus        82 Yq   83 (84)
T cd04436          82 YQ   83 (84)
T ss_pred             ec
Confidence            53

Rgd2-like proteins share a common domain architecture, containing, beside the RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology) domain. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5.

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=98.32  E-value=5.8e-07  Score=84.83  Aligned_cols=50  Identities=26%  Similarity=0.413  Sum_probs=44.7

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCc
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAV  476 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TV  476 (893)
                      |+||+.++||+|++|+++|+++|++|+++|+..++..+.+|.++.+...+
T Consensus         1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~~~~   50 (111)
T cd03036           1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEKSGL   50 (111)
T ss_pred             CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHHcCC
Confidence            68999999999999999999999999999999988888888887665544

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E

Probab=98.29  E-value=2.2e-06  Score=73.03  Aligned_cols=70  Identities=17%  Similarity=0.174  Sum_probs=57.8

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHh
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE  497 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~e  497 (893)
                      ++||+.++||+|.+++.+|..+|++|+.++++.... ..++.+.++..+||++..+|..+.....+.++.+
T Consensus         1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~-~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~   70 (73)
T cd03059           1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNP-PEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLD   70 (73)
T ss_pred             CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCC-CHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence            369999999999999999999999999998874422 3567788888999999888887777776666543

coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=98.28  E-value=2.5e-06  Score=73.20  Aligned_cols=66  Identities=14%  Similarity=0.208  Sum_probs=55.1

Q ss_pred             EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEc-CeeecccHhHHH
Q 002682          428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFN-EILMGGLSELKA  494 (893)
Q Consensus       428 vLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFIn-Gk~IGG~DeL~e  494 (893)
                      +||+.++||+|.+++.+|..+|++|+.++++.... ..++.+.++..+||++..+ |..+.....+.+
T Consensus         2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~-~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~   68 (71)
T cd03060           2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNK-PAEMLAASPKGTVPVLVLGNGTVIEESLDIMR   68 (71)
T ss_pred             EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCC-CHHHHHHCCCCCCCEEEECCCcEEecHHHHHH
Confidence            68999999999999999999999999999875432 3578888999999999996 887766555544

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=98.25  E-value=2.2e-06  Score=72.50  Aligned_cols=69  Identities=19%  Similarity=0.243  Sum_probs=55.2

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCC--hhHHHHHHHHhCCCCcceEEE-cCeeecccHhHHHh
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFF-NEILMGGLSELKAL  495 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d--~e~r~EL~k~sG~~TVPqIFI-nGk~IGG~DeL~el  495 (893)
                      ++||+.++||+|.+++.+|..+|++|+.+.++..  .....++.+.++..+||++.+ +|..+.....+.++
T Consensus         1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~y   72 (74)
T cd03051           1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRY   72 (74)
T ss_pred             CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHH
Confidence            3699999999999999999999999999888642  233467888899999999997 66666666555544

cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.

>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.22  E-value=3.5e-06  Score=72.04  Aligned_cols=70  Identities=19%  Similarity=0.099  Sum_probs=57.9

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCC--ChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhH
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDV--YPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD  496 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~--d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~  496 (893)
                      ++||+.++||+|.+++.+|..+|++|+.++++.  .....+++.+.+...+||++..+|..+.....+.++.
T Consensus         1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL   72 (74)
T cd03045           1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYL   72 (74)
T ss_pred             CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHH
Confidence            369999999999999999999999999998873  3334578888888999999999887777666655543

GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=98.21  E-value=1.5e-06  Score=80.58  Aligned_cols=49  Identities=22%  Similarity=0.329  Sum_probs=44.0

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCC
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSA  475 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~T  475 (893)
                      |+||++++||+|++|+++|+++|++|+++||..++...++|.++.+...
T Consensus         1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~~~   49 (105)
T cd02977           1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAKLG   49 (105)
T ss_pred             CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHhcC
Confidence            5799999999999999999999999999999988888888888776544

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A

Probab=98.13  E-value=6e-06  Score=71.84  Aligned_cols=68  Identities=24%  Similarity=0.236  Sum_probs=59.8

Q ss_pred             EEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHh
Q 002682          429 LYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE  497 (893)
Q Consensus       429 LYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~e  497 (893)
                      +|+.++||||.+++-+|+.+||+|+.++++.... ..++.+.++..+||++..+|..+.+...+.++.+
T Consensus         1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~-~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~   68 (75)
T PF13417_consen    1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEK-RPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLE   68 (75)
T ss_dssp             EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTST-SHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHH
T ss_pred             CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccc-hhHHHhhcccccceEEEECCEEEeCHHHHHHHHH
Confidence            6999999999999999999999999999975433 6778888999999999999999998887776654

...

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=98.13  E-value=8.5e-06  Score=70.60  Aligned_cols=55  Identities=20%  Similarity=0.190  Sum_probs=44.4

Q ss_pred             cEEEEEcCCChhHHHHHHHHHh----cC--CceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCe
Q 002682          426 RVILYTRLGCQESREVRLFLYW----KR--LRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEI  484 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e----~G--I~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk  484 (893)
                      .|++|+.+|||+|+.++..|.+    .+  +.+..+|++.+++    +.+..|..++|+++++|+
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~vPt~~~~g~   62 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQ----KAMEYGIMAVPAIVINGD   62 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHH----HHHHcCCccCCEEEECCE
Confidence            4899999999999999999864    34  5677888876654    334578999999999997

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=98.10  E-value=9.1e-06  Score=68.91  Aligned_cols=69  Identities=17%  Similarity=0.241  Sum_probs=57.2

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCC--hhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHh
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKAL  495 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d--~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el  495 (893)
                      +++|+.+.||+|.+++.+|..+|++|+.++|+..  .....++.+.+...++|++..+|..+.....+.++
T Consensus         1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~y   71 (73)
T cd03056           1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVY   71 (73)
T ss_pred             CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence            3699999999999999999999999999998742  23446777888889999999999888776665544

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>PRK01655 spxA transcriptional regulator Spx; Reviewed

Probab=98.04  E-value=6.6e-06  Score=80.14  Aligned_cols=46  Identities=24%  Similarity=0.358  Sum_probs=42.7

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhC
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAG  472 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG  472 (893)
                      |+||+.++||+|++|+++|+++||+|+++||..++..+++|.++..
T Consensus         2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l~   47 (131)
T PRK01655          2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQILR   47 (131)
T ss_pred             EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHHH
Confidence            8999999999999999999999999999999999988888887654

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=98.03  E-value=2.3e-05  Score=69.97  Aligned_cols=53  Identities=26%  Similarity=0.411  Sum_probs=44.2

Q ss_pred             cEEEEEcCCChhHHHHHHHHHhc----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcC
Q 002682          426 RVILYTRLGCQESREVRLFLYWK----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNE  483 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e~----GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInG  483 (893)
                      +|++||+++|+.|..|+.+|...    ++.++.+||+.+++    +.+.+|. .+|++.++|
T Consensus         1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~----l~~~Y~~-~IPVl~~~~   57 (81)
T PF05768_consen    1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPE----LFEKYGY-RIPVLHIDG   57 (81)
T ss_dssp             -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH----HHHHSCT-STSEEEETT
T ss_pred             CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHH----HHHHhcC-CCCEEEEcC
Confidence            48999999999999999999964    46689999997766    5567774 899999999

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=98.02  E-value=1.2e-05  Score=70.80  Aligned_cols=54  Identities=17%  Similarity=0.185  Sum_probs=43.9

Q ss_pred             EEEEEcCCChhHHHH----HHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeee
Q 002682          427 VILYTRLGCQESREV----RLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILM  486 (893)
Q Consensus       427 VvLYTksgCP~CkrA----K~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~I  486 (893)
                      |.+|+ +|||.|+.+    +++++++|+.++.++|+..++    .. ..|..++|+|++||+.+
T Consensus         3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~----a~-~~~v~~vPti~i~G~~~   60 (76)
T TIGR00412         3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTDMNE----IL-EAGVTATPGVAVDGELV   60 (76)
T ss_pred             EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHH----HH-HcCCCcCCEEEECCEEE
Confidence            88888 999999999    668888999999999973222    22 36999999999999665

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=97.91  E-value=2e-05  Score=71.90  Aligned_cols=58  Identities=22%  Similarity=0.344  Sum_probs=48.9

Q ss_pred             cEEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeec
Q 002682          426 RVILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMG  487 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e~-----GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IG  487 (893)
                      .|.+|+.+|||+|..++.++.+.     ++.|..+|++..++    +.+.+|...+|.+++||+.++
T Consensus        15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e----~a~~~~V~~vPt~vidG~~~~   77 (89)
T cd03026          15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQD----EVEERGIMSVPAIFLNGELFG   77 (89)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHH----HHHHcCCccCCEEEECCEEEE
Confidence            48899999999999999988764     78899999986654    445679999999999998764

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family

Probab=97.89  E-value=1.9e-05  Score=75.04  Aligned_cols=46  Identities=20%  Similarity=0.309  Sum_probs=41.5

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhC
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAG  472 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG  472 (893)
                      |+||+.++||+|++|+++|+++|++|+.+|+..++..++++.++..
T Consensus         1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~   46 (117)
T TIGR01617         1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILS   46 (117)
T ss_pred             CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHH
Confidence            5799999999999999999999999999999988888888876553

This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.

>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes

Probab=97.89  E-value=2e-05  Score=74.74  Aligned_cols=46  Identities=26%  Similarity=0.412  Sum_probs=42.0

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhC
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAG  472 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG  472 (893)
                      |+||+.++|++|++|+++|+++||+|+.+|+..++..+.+|.++..
T Consensus         2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~   47 (115)
T cd03032           2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILS   47 (115)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHH
Confidence            7899999999999999999999999999999988887888877654

It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.

>PRK12559 transcriptional regulator Spx; Provisional

Probab=97.81  E-value=2.9e-05  Score=75.86  Aligned_cols=46  Identities=28%  Similarity=0.421  Sum_probs=42.4

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhC
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAG  472 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG  472 (893)
                      |+||+.++|++|++|+++|+++||+|+++|+..++...++|..+..
T Consensus         2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l~   47 (131)
T PRK12559          2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSILR   47 (131)
T ss_pred             EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHHH
Confidence            8899999999999999999999999999999988888888877654

>PRK13344 spxA transcriptional regulator Spx; Reviewed

Probab=97.77  E-value=3.7e-05  Score=75.22  Aligned_cols=45  Identities=24%  Similarity=0.411  Sum_probs=41.3

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHh
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA  471 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~s  471 (893)
                      |+||+.++|++|++|+++|+++||+|+++|+..++..+++|..+.
T Consensus         2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l   46 (132)
T PRK13344          2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAIL   46 (132)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHH
Confidence            889999999999999999999999999999998887777777764

>PHA02125 thioredoxin-like protein

Probab=97.75  E-value=8.6e-05  Score=65.01  Aligned_cols=55  Identities=18%  Similarity=0.309  Sum_probs=41.6

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeee
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILM  486 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~I  486 (893)
                      |++|+.+||++|+.++.+|++.  .|+.++|+.+..  .++.+..+..++|++. +|+.+
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~--~~~~~~vd~~~~--~~l~~~~~v~~~PT~~-~g~~~   56 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANV--EYTYVDVDTDEG--VELTAKHHIRSLPTLV-NTSTL   56 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHH--hheEEeeeCCCC--HHHHHHcCCceeCeEE-CCEEE
Confidence            8999999999999999999865  455555554332  2566677999999987 66544

>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC

Probab=97.73  E-value=4e-05  Score=72.10  Aligned_cols=46  Identities=17%  Similarity=0.274  Sum_probs=41.5

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhC
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAG  472 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG  472 (893)
                      |+||+.++|+.|++|+++|+++|++|+++|+..+|...++|..+..
T Consensus         1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~   46 (105)
T cd03035           1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLA   46 (105)
T ss_pred             CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHH
Confidence            5799999999999999999999999999999988877777777653

The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.

>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins

Probab=97.71  E-value=0.00012  Score=62.97  Aligned_cols=57  Identities=11%  Similarity=0.003  Sum_probs=49.2

Q ss_pred             CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHh
Q 002682          433 LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE  497 (893)
Q Consensus       433 sgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~e  497 (893)
                      +.||+|.+++.+|+.+|++|+.++++...        .+...+||++..+|+.+.++..+.++.+
T Consensus        14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~~--------~~p~g~vP~l~~~g~~l~es~~I~~yL~   70 (72)
T cd03054          14 SLSPECLKVETYLRMAGIPYEVVFSSNPW--------RSPTGKLPFLELNGEKIADSEKIIEYLK   70 (72)
T ss_pred             CCCHHHHHHHHHHHhCCCceEEEecCCcc--------cCCCcccCEEEECCEEEcCHHHHHHHHh
Confidence            38999999999999999999999997532        4667799999999999999888777654

Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.

>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells

Probab=97.69  E-value=0.00011  Score=64.26  Aligned_cols=70  Identities=17%  Similarity=0.237  Sum_probs=57.9

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCCh--hHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhH
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP--SRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD  496 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~--e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~  496 (893)
                      +++|..++||+|.+++-+|.++|++|+.+.++...  ....++.++++..+||++..||..+.....+.++.
T Consensus         1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yL   72 (73)
T cd03052           1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYL   72 (73)
T ss_pred             CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHh
Confidence            47999999999999999999999999998886432  23457889999999999999998887776665543

More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.

>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins

Probab=97.68  E-value=0.00016  Score=62.19  Aligned_cols=71  Identities=15%  Similarity=0.073  Sum_probs=58.8

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCCh--hHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHh
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP--SRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE  497 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~--e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~e  497 (893)
                      +++|+.+.||+|.+++-+|..+|++|+.+.++...  ....++.+.+...+||++..+|..+.....+.++..
T Consensus         2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~   74 (76)
T cd03053           2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLA   74 (76)
T ss_pred             eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHh
Confidence            67999999999999999999999999998887432  234567888899999999998888877777666654

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t

>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=97.66  E-value=0.00015  Score=62.44  Aligned_cols=70  Identities=16%  Similarity=0.074  Sum_probs=55.1

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhC-CCCcceEEEcCeeecccHhHHHhHh
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAG-SSAVPKVFFNEILMGGLSELKALDE  497 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG-~~TVPqIFInGk~IGG~DeL~el~e  497 (893)
                      +++|+.+.||+|.+++.+|..+|++|+.+.++.. ....++.+.+. ..+||.+..+|..+.....+.++.+
T Consensus         1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~-~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~   71 (74)
T cd03058           1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG-NKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYID   71 (74)
T ss_pred             CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc-cCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHH
Confidence            3589999999999999999999999999887643 22345667776 4899999988887777766665543

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,

>cd04435 DEP_fRom2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) Rom2-like proteins

Probab=97.64  E-value=6e-05  Score=67.94  Aligned_cols=79  Identities=25%  Similarity=0.463  Sum_probs=69.5

Q ss_pred             HHHHHHhccCCceeeccccceeeecccccchhHHHHHHhh-cccCHHHHHHHHHHHHhcccccccccccccccCC-ceEE
Q 002682          537 LALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLDENLFEDGN-HLYR  614 (893)
Q Consensus       537 La~iv~~mk~gi~IKDRr~~LrtYk~CF~GsELVDWLie~-~v~sReEAv~lGQ~Lld~glI~hV~~~~~F~Dg~-~LYR  614 (893)
                      |..+...++..|+..+|....-.|++.|+|.++|+-|..- ...+|.=|+.+|+.|-.+.++|.|+-+|.+.|+. -.|+
T Consensus         2 LS~VA~~fr~~I~~~~~~K~gl~Y~~aFtG~~aV~~i~~ii~t~DRnlALllgRsLdaQkfFhdV~y~hrLrDs~~evY~   81 (82)
T cd04435           2 LSRVALQLRDKIPLGDHTKDGITYRNSFTGKDAVTTIQGIIRTSDRNLALLLGRSLDAQKFFHDVTYDHRLRDSVDEVYR   81 (82)
T ss_pred             hHHHHHHHHHhccccccccCCeecCcccCcHHHHHHHHHHHhcccHHHHHHHHHHHHHhHhhhhcccCCccccChhhhhc
Confidence            3456677788899999999999999999999999999886 5678999999999999999999999889999884 6777


Q ss_pred             e
Q 002682          615 F  615 (893)
Q Consensus       615 F  615 (893)
                      |
T Consensus        82 F   82 (82)
T cd04435          82 F   82 (82)
T ss_pred             C
Confidence            6

Rom2-like proteins share a common domain architecture, containing, beside the RhoGEF domain, a DEP, a PH (pleckstrin homology) and a CNH domain. Rom2, a yeast GEF for Rho1 and Rho2, is involved in mediating stress response via the Ras-cAMP pathway and also plays a role in mediating resistance to sphingolipid disturbances.

>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC

Probab=97.58  E-value=9.9e-05  Score=70.49  Aligned_cols=46  Identities=20%  Similarity=0.300  Sum_probs=42.0

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhC
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAG  472 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG  472 (893)
                      |+||+.+.|+.|++|+++|+++|++|+++|+..++.-+++|..+..
T Consensus         2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~   47 (113)
T cd03033           2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFG   47 (113)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHH
Confidence            8899999999999999999999999999999988877888887653

It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.

>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=97.50  E-value=0.00027  Score=60.65  Aligned_cols=68  Identities=10%  Similarity=-0.038  Sum_probs=54.3

Q ss_pred             EEEEcCCChhHHHHHHHHHh--cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE-cCeeecccHhHHHhH
Q 002682          428 ILYTRLGCQESREVRLFLYW--KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF-NEILMGGLSELKALD  496 (893)
Q Consensus       428 vLYTksgCP~CkrAK~lL~e--~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI-nGk~IGG~DeL~el~  496 (893)
                      ++|+.+.||+|.+++.+|..  +|++|+.+.++.. ....++.+.++..+||++.. +|..+.....+.++.
T Consensus         2 ~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yL   72 (73)
T cd03049           2 KLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPW-SDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYL   72 (73)
T ss_pred             EEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcc-cCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhh
Confidence            68999999999999999999  8999999998642 22345677888899999985 777777766665543

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=97.46  E-value=0.00033  Score=59.50  Aligned_cols=69  Identities=17%  Similarity=0.264  Sum_probs=56.2

Q ss_pred             EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCCh--hHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhH
Q 002682          428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP--SRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD  496 (893)
Q Consensus       428 vLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~--e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~  496 (893)
                      ++|+.+.|++|.+++.+|..+|++|+.+.++..+  ....++.+.+...+||++..+|..+.....+.++.
T Consensus         2 ~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL   72 (73)
T cd03042           2 ILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYL   72 (73)
T ss_pred             EEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHh
Confidence            6899999999999999999999999998886432  23456778888999999999988887766665543

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.

>KOG4023 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.44  E-value=0.00021  Score=66.88  Aligned_cols=81  Identities=20%  Similarity=0.318  Sum_probs=67.8

Q ss_pred             cEEEEEcCCChhH------HHHHHHHHhcCCceEEEEcCCChhHHHHH--------HHHhCCCCcceEEEcCeeecccHh
Q 002682          426 RVILYTRLGCQES------REVRLFLYWKRLRYVEINIDVYPSRKMEL--------EKFAGSSAVPKVFFNEILMGGLSE  491 (893)
Q Consensus       426 kVvLYTksgCP~C------krAK~lL~e~GI~YeeIDId~d~e~r~EL--------~k~sG~~TVPqIFInGk~IGG~De  491 (893)
                      .|.+|+++.-+.-      ..+..+|+...|.|+++||......+.++        +-..|.+..||||-++++.|+|+.
T Consensus         3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye~   82 (108)
T KOG4023|consen    3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYEL   82 (108)
T ss_pred             ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHHH
Confidence            3888998876654      46778999999999999998776665544        445689999999999999999999


Q ss_pred             HHHhHhcCcchHHHH
Q 002682          492 LKALDESGKLDEKIE  506 (893)
Q Consensus       492 L~el~esGeL~~lLk  506 (893)
                      +.+..+++.|.+.|+
T Consensus        83 F~ea~E~ntl~eFL~   97 (108)
T KOG4023|consen   83 FFEAVEQNTLQEFLG   97 (108)
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999888888884

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=97.43  E-value=0.00017  Score=68.01  Aligned_cols=52  Identities=21%  Similarity=0.340  Sum_probs=41.5

Q ss_pred             cEEEE-EcCCChhHHHHHHHHHhcC-----CceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682          426 RVILY-TRLGCQESREVRLFLYWKR-----LRYVEINIDVYPSRKMELEKFAGSSAVPKVFF  481 (893)
Q Consensus       426 kVvLY-TksgCP~CkrAK~lL~e~G-----I~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI  481 (893)
                      .|+|| +.+|||+|+.++.+|.+..     +.|..+|++.++    ++.+.+|..++|++++
T Consensus        24 ~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~----~l~~~~~v~~vPt~~i   81 (113)
T cd02975          24 DLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDK----EKAEKYGVERVPTTIF   81 (113)
T ss_pred             EEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCH----HHHHHcCCCcCCEEEE
Confidence            35555 7899999999999997643     678888988765    3556789999999999

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=97.39  E-value=0.00045  Score=60.82  Aligned_cols=54  Identities=19%  Similarity=0.209  Sum_probs=40.5

Q ss_pred             cEEEEEcCCChhHHHHHHH----HHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCee
Q 002682          426 RVILYTRLGCQESREVRLF----LYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEIL  485 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~l----L~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~  485 (893)
                      +|.+ ..++||+|..+..+    +...|+.++.+++. +   .+++ ..+|..++|.++|||+.
T Consensus         2 ~I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~-~---~~~~-~~ygv~~vPalvIng~~   59 (76)
T PF13192_consen    2 KIKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDIE-D---FEEI-EKYGVMSVPALVINGKV   59 (76)
T ss_dssp             EEEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEETT-T---HHHH-HHTT-SSSSEEEETTEE
T ss_pred             EEEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcc-C---HHHH-HHcCCCCCCEEEECCEE
Confidence            3778 56779999977665    45679999999983 2   2334 56899999999999975

...

>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=97.37  E-value=0.00063  Score=58.98  Aligned_cols=70  Identities=10%  Similarity=-0.031  Sum_probs=58.4

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHh
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE  497 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~e  497 (893)
                      +++|..+.|+.|.+++-+|..+|++|+.+.++. .....++...+...+||++..+|..+.....+..+..
T Consensus         2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~-~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~   71 (73)
T cd03076           2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTY-EEWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLG   71 (73)
T ss_pred             cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecH-HHhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHh
Confidence            679999999999999999999999999998864 2334467777788999999999998888777766653

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w

>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha

Probab=97.36  E-value=0.00048  Score=59.05  Aligned_cols=70  Identities=11%  Similarity=0.029  Sum_probs=56.2

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhH
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD  496 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~  496 (893)
                      +++|..+.|+.|.+++-+|..+|++|+.+.++.......++.+.+...+||++..+|..+.....+.++.
T Consensus         1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL   70 (72)
T cd03039           1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYL   70 (72)
T ss_pred             CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecHHHHHHh
Confidence            3689999999999999999999999999988643222234667778899999999998887776666554

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma

>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs

Probab=97.30  E-value=0.00079  Score=58.59  Aligned_cols=63  Identities=16%  Similarity=0.062  Sum_probs=53.1

Q ss_pred             EEEEEcC-------CChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHh
Q 002682          427 VILYTRL-------GCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE  497 (893)
Q Consensus       427 VvLYTks-------gCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~e  497 (893)
                      ++||..+       .||+|.+++.+|+.+|++|+.+.++.        .+.++..+||++..+|+.+.+...+.++.+
T Consensus         2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~--------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL~   71 (75)
T cd03080           2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL--------AKRSPKGKLPFIELNGEKIADSELIIDHLE   71 (75)
T ss_pred             EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc--------ccCCCCCCCCEEEECCEEEcCHHHHHHHHH
Confidence            5788888       46999999999999999999988863        245678999999999999988887777654

Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele

>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs

Probab=97.28  E-value=0.00087  Score=58.72  Aligned_cols=70  Identities=17%  Similarity=0.155  Sum_probs=56.1

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCC--ChhHHHHHHHHhCCCCcceEEEc---CeeecccHhHHHhHh
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDV--YPSRKMELEKFAGSSAVPKVFFN---EILMGGLSELKALDE  497 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~--d~e~r~EL~k~sG~~TVPqIFIn---Gk~IGG~DeL~el~e  497 (893)
                      +++|+.+. |+|.+++-+|..+|++|+.+.++.  ......++.+.+...+||++..+   |..+.....+.++..
T Consensus         2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~   76 (81)
T cd03048           2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLA   76 (81)
T ss_pred             eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHH
Confidence            68999886 999999999999999999888763  23445678888889999999887   677776666655543

Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and

>PRK10387 glutaredoxin 2; Provisional

Probab=97.27  E-value=0.0007  Score=68.80  Aligned_cols=68  Identities=15%  Similarity=0.102  Sum_probs=52.1

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEE-EcCeeecccHhHHHhH
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVF-FNEILMGGLSELKALD  496 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIF-InGk~IGG~DeL~el~  496 (893)
                      +++|+.+.||+|.+++-+|..+||+|+.++++..... .. .+.++..+||++. .+|..+.....+..+.
T Consensus         1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~-~~-~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL   69 (210)
T PRK10387          1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEA-TP-IRMIGQKQVPILQKDDGSYMPESLDIVHYI   69 (210)
T ss_pred             CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchh-hH-HHhcCCcccceEEecCCeEecCHHHHHHHH
Confidence            3699999999999999999999999999998644322 22 3566788999994 5777777665554444

>TIGR02182 GRXB Glutaredoxin, GrxB family

Probab=97.27  E-value=0.00061  Score=70.39  Aligned_cols=68  Identities=15%  Similarity=0.083  Sum_probs=54.1

Q ss_pred             EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEE-EcCeeecccHhHHHhHh
Q 002682          428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVF-FNEILMGGLSELKALDE  497 (893)
Q Consensus       428 vLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIF-InGk~IGG~DeL~el~e  497 (893)
                      ++|+...||+|.+++-+|..+|++|+.+++..... .. ..+.++..+||++. .||..+++...+.++..
T Consensus         1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~-~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~   69 (209)
T TIGR02182         1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDE-ET-PIRMIGAKQVPILQKDDGRAMPESLDIVAYFD   69 (209)
T ss_pred             CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcc-hh-HHHhcCCCCcceEEeeCCeEeccHHHHHHHHH
Confidence            47999999999999999999999999998864432 12 25667889999997 78888888766665544

This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.

>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]

Probab=97.25  E-value=0.00043  Score=66.71  Aligned_cols=45  Identities=22%  Similarity=0.373  Sum_probs=41.6

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHh
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA  471 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~s  471 (893)
                      |+||..+.|..|++|+.||+++||+|+++|+...+.-+++|.++.
T Consensus         3 itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l   47 (117)
T COG1393           3 ITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKIL   47 (117)
T ss_pred             EEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHH
Confidence            999999999999999999999999999999998887788887764

>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins

Probab=97.24  E-value=0.00087  Score=62.06  Aligned_cols=64  Identities=14%  Similarity=0.261  Sum_probs=52.5

Q ss_pred             CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHh
Q 002682          433 LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE  497 (893)
Q Consensus       433 sgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~e  497 (893)
                      ..||||++++-.|..+||+|+.++|+.... -+.+.+++....||++..+|..|.....+.++.+
T Consensus        20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~-p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLd   83 (91)
T cd03061          20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRK-PEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLE   83 (91)
T ss_pred             CCChhHHHHHHHHHHCCCceEEEEeCCCCC-CHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHH
Confidence            579999999999999999999998874321 2457888888999999999998887777666654

They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI

>PRK10026 arsenate reductase; Provisional

Probab=97.23  E-value=0.00051  Score=68.29  Aligned_cols=47  Identities=19%  Similarity=0.222  Sum_probs=42.4

Q ss_pred             cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhC
Q 002682          426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAG  472 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG  472 (893)
                      .|+||+.+.|..|++|++||+++|++|+++|+-.++...++|..+..
T Consensus         3 ~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~   49 (141)
T PRK10026          3 NITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIA   49 (141)
T ss_pred             EEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHH
Confidence            69999999999999999999999999999999888877777777654

>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor

Probab=97.14  E-value=0.00067  Score=60.08  Aligned_cols=64  Identities=22%  Similarity=0.209  Sum_probs=50.5

Q ss_pred             CCChhHHHHHHHHHhcCCceEEEEcCCC--hhHHHHHHHHhCCCCcceEEEc-CeeecccHhHHHhHh
Q 002682          433 LGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFFN-EILMGGLSELKALDE  497 (893)
Q Consensus       433 sgCP~CkrAK~lL~e~GI~YeeIDId~d--~e~r~EL~k~sG~~TVPqIFIn-Gk~IGG~DeL~el~e  497 (893)
                      ++||+|.+++-+|..+|++|+.+.++..  .....++ +.++...||++..+ |..+.+...+.++.+
T Consensus        14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~   80 (84)
T cd03038          14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLE   80 (84)
T ss_pred             CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHH
Confidence            6899999999999999999998887632  2223344 56778999999998 888888877776654

This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=97.11  E-value=0.0015  Score=50.50  Aligned_cols=57  Identities=21%  Similarity=0.311  Sum_probs=46.1

Q ss_pred             EEEEEcCCChhHHHHHHHHH-----hcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCe
Q 002682          427 VILYTRLGCQESREVRLFLY-----WKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEI  484 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~-----e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk  484 (893)
                      |++|..++|++|.+++..|.     ..++.|..++++........ ....+..++|++++.+.
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~~~~~   62 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKE-LKRYGVGGVPTLVVFGP   62 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhH-HHhCCCccccEEEEEeC
Confidence            46899999999999999999     67899999999877664443 23467789999998763

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=97.08  E-value=0.002  Score=61.97  Aligned_cols=63  Identities=11%  Similarity=0.039  Sum_probs=43.6

Q ss_pred             EEEEEcCCChhHHHHHHHH----HhcCCceEEEEcCCCh--h-----HHHHHHHHhC----CCCcceEEE--cCeeeccc
Q 002682          427 VILYTRLGCQESREVRLFL----YWKRLRYVEINIDVYP--S-----RKMELEKFAG----SSAVPKVFF--NEILMGGL  489 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL----~e~GI~YeeIDId~d~--e-----~r~EL~k~sG----~~TVPqIFI--nGk~IGG~  489 (893)
                      |+.|+++|||+|+.+.-.|    ++.++++-.+|++.++  +     ...++.+..+    ...+|++++  +|+.++..
T Consensus        27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v~~~  106 (122)
T TIGR01295        27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQVSVR  106 (122)
T ss_pred             EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEEEEE
Confidence            8889999999999966555    4466889999998543  1     1234444433    445998875  78776544

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase

Probab=97.06  E-value=0.002  Score=55.78  Aligned_cols=70  Identities=23%  Similarity=0.285  Sum_probs=55.9

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCC--hhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhH
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD  496 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d--~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~  496 (893)
                      +++|..+.|++|.+++-+|..+|++|+.+.++..  +....++.+.+...+||++..+|..+....-+..+.
T Consensus         1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl   72 (76)
T cd03050           1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYL   72 (76)
T ss_pred             CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHH
Confidence            3689999999999999999999999999888642  222356778888999999998887776666555544

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC

>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis

Probab=97.04  E-value=0.0018  Score=56.26  Aligned_cols=69  Identities=14%  Similarity=0.019  Sum_probs=55.5

Q ss_pred             EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCCh-hHHHHHHHHhCCCCcceEEEc-CeeecccHhHHHhH
Q 002682          428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP-SRKMELEKFAGSSAVPKVFFN-EILMGGLSELKALD  496 (893)
Q Consensus       428 vLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~-e~r~EL~k~sG~~TVPqIFIn-Gk~IGG~DeL~el~  496 (893)
                      ++|+.+.||+|.+++-+|..+|++|+.+.|+... ....++.+++...+||++..+ |..+....-+.++.
T Consensus         2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL   72 (75)
T cd03044           2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYV   72 (75)
T ss_pred             eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHH
Confidence            5899999999999999999999999999887542 223578888899999999985 77776655555544

EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=97.03  E-value=0.0013  Score=68.57  Aligned_cols=56  Identities=20%  Similarity=0.235  Sum_probs=44.7

Q ss_pred             cEEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCee
Q 002682          426 RVILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEIL  485 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e~-----GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~  485 (893)
                      .|++|+.+|||+|..++.+|++.     .|.+..+|++.+++    +.+.+|..++|+++++++.
T Consensus       136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~----~~~~~~V~~vPtl~i~~~~  196 (215)
T TIGR02187       136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPD----LAEKYGVMSVPKIVINKGV  196 (215)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHH----HHHHhCCccCCEEEEecCC
Confidence            47889999999999999998864     46677788877655    4456799999999998643

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PRK10853 putative reductase; Provisional

Probab=97.02  E-value=0.00047  Score=66.37  Aligned_cols=45  Identities=22%  Similarity=0.256  Sum_probs=41.1

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHh
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA  471 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~s  471 (893)
                      |+||+.+.|..|++|+.+|+++|++|+.+|+-.+|...++|.++.
T Consensus         2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l   46 (118)
T PRK10853          2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFI   46 (118)
T ss_pred             EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHH
Confidence            789999999999999999999999999999988877777777765

>PRK09481 sspA stringent starvation protein A; Provisional

Probab=97.01  E-value=0.0016  Score=66.95  Aligned_cols=59  Identities=17%  Similarity=0.158  Sum_probs=50.7

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeee
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILM  486 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~I  486 (893)
                      +++|+.++||+|.+++-+|..+|++|+.+.|+.. ....++.+++...+||++..+|..+
T Consensus        11 ~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~~~~nP~g~VPvL~~~g~~l   69 (211)
T PRK09481         11 MTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKD-NLPQDLIDLNPYQSVPTLVDRELTL   69 (211)
T ss_pred             eEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcc-cCCHHHHHhCCCCCCCEEEECCEEe
Confidence            6899999999999999999999999999998753 2235788888899999999887654

>TIGR00014 arsC arsenate reductase (glutaredoxin)

Probab=96.99  E-value=0.00092  Score=63.70  Aligned_cols=46  Identities=26%  Similarity=0.289  Sum_probs=40.7

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhC
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAG  472 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG  472 (893)
                      |+||+.++|+-|++|+.+|+++|++|+.+|+...|--.+++..+..
T Consensus         1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~   46 (114)
T TIGR00014         1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFA   46 (114)
T ss_pred             CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHH
Confidence            5799999999999999999999999999999888766777776653

composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.

>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli

Probab=96.96  E-value=0.0011  Score=62.88  Aligned_cols=45  Identities=18%  Similarity=0.244  Sum_probs=39.4

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHh
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA  471 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~s  471 (893)
                      |+||+.++|+-|++|+++|+++|++|+++|+...+-..+++..+.
T Consensus         1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l   45 (112)
T cd03034           1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELL   45 (112)
T ss_pred             CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHH
Confidence            579999999999999999999999999999987776666666654

E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.

>TIGR01616 nitro_assoc nitrogenase-associated protein

Probab=96.96  E-value=0.0012  Score=64.33  Aligned_cols=47  Identities=19%  Similarity=0.250  Sum_probs=42.5

Q ss_pred             cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhC
Q 002682          426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAG  472 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG  472 (893)
                      .|+||+.+.|..|++|+.+|+++||+|+.+|+..++--+++|..+..
T Consensus         2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~   48 (126)
T TIGR01616         2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYFG   48 (126)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHH
Confidence            48899999999999999999999999999999888877888887654

This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.

>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B

Probab=96.93  E-value=0.0011  Score=57.26  Aligned_cols=65  Identities=15%  Similarity=0.069  Sum_probs=50.5

Q ss_pred             CChhHHHHHHHHHhcCCceEEEEcCC--Chh-HHHHHHHHhCCCCcceEEE-cCeeecccHhHHHhHhc
Q 002682          434 GCQESREVRLFLYWKRLRYVEINIDV--YPS-RKMELEKFAGSSAVPKVFF-NEILMGGLSELKALDES  498 (893)
Q Consensus       434 gCP~CkrAK~lL~e~GI~YeeIDId~--d~e-~r~EL~k~sG~~TVPqIFI-nGk~IGG~DeL~el~es  498 (893)
                      .||||.++.-+|..+|++|+..-+..  .+. ...++.++++..+||++.. +|+.++....+.++.++
T Consensus         1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~   69 (70)
T PF13409_consen    1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEE   69 (70)
T ss_dssp             T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHH
T ss_pred             CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhc
Confidence            49999999999999999999876632  222 2257888999999999998 78999888887776653

...

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=96.93  E-value=0.0023  Score=58.41  Aligned_cols=55  Identities=15%  Similarity=0.102  Sum_probs=41.4

Q ss_pred             EEEEEcCCChhHHHHHHHH------Hh---cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682          427 VILYTRLGCQESREVRLFL------YW---KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF  481 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL------~e---~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI  481 (893)
                      +++|+.+||++|++....+      .+   .++.+..+|++.+.....++.+..|..++|++++
T Consensus        15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~   78 (104)
T cd02953          15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLF   78 (104)
T ss_pred             EEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence            7789999999999887443      11   1577778888766554567777789999998775

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=96.90  E-value=0.0036  Score=53.43  Aligned_cols=57  Identities=18%  Similarity=0.354  Sum_probs=45.8

Q ss_pred             EEEEEcCCChhHHHHHHHHHh-----cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeec
Q 002682          427 VILYTRLGCQESREVRLFLYW-----KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMG  487 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e-----~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~IG  487 (893)
                      +++|+.+||++|..+...|.+     .++.|..+|++..+..    .+..|...+|++++  +|+.++
T Consensus        14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~v~~~P~~~~~~~g~~~~   77 (93)
T cd02947          14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPEL----AEEYGVRSIPTFLFFKNGKEVD   77 (93)
T ss_pred             EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhH----HHhcCcccccEEEEEECCEEEE
Confidence            888999999999999999987     7888999998875553    34457788999877  676443

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]

Probab=96.80  E-value=0.0034  Score=68.40  Aligned_cols=64  Identities=22%  Similarity=0.425  Sum_probs=52.7

Q ss_pred             cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhH
Q 002682          426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSEL  492 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL  492 (893)
                      ++++|--.+||||-+++.+|+=+||+|+.+.|+  |-.|++++ .+...-||.+.+.|+-+-...-+
T Consensus        90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVn--pV~r~eIk-~SsykKVPil~~~Geqm~dSsvI  153 (370)
T KOG3029|consen   90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVN--PVLRQEIK-WSSYKKVPILLIRGEQMVDSSVI  153 (370)
T ss_pred             eEEEEeeccCchHHHHHHHHhhcCCceEEEEec--chhhhhcc-ccccccccEEEeccceechhHHH
Confidence            599999999999999999999999999999984  56666664 56778999999998755444433

>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=96.78  E-value=0.0038  Score=54.10  Aligned_cols=68  Identities=13%  Similarity=0.146  Sum_probs=53.3

Q ss_pred             EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCCh--hHHHHHHHHhCCCCcceEEEc-CeeecccHhHHHhH
Q 002682          428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP--SRKMELEKFAGSSAVPKVFFN-EILMGGLSELKALD  496 (893)
Q Consensus       428 vLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~--e~r~EL~k~sG~~TVPqIFIn-Gk~IGG~DeL~el~  496 (893)
                      ++|+.+.|+ |.+++.+|..+|++|+.+.++...  ....++.+.++..+||++..+ |..+.....+.++.
T Consensus         2 ~Ly~~~~~~-~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL   72 (77)
T cd03057           2 KLYYSPGAC-SLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYL   72 (77)
T ss_pred             EEEeCCCCc-hHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHH
Confidence            589988774 889999999999999988876432  234678888999999999987 77776666665554

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.

>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=96.76  E-value=0.0048  Score=53.12  Aligned_cols=68  Identities=13%  Similarity=0.086  Sum_probs=54.7

Q ss_pred             EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCC--hhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHh
Q 002682          428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKAL  495 (893)
Q Consensus       428 vLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d--~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el  495 (893)
                      ++|..+++|+|.+++-+|..+|++|+.+.++..  .....++.+.+...+||++..+|..+.....+.++
T Consensus         2 ~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~Y   71 (73)
T cd03047           2 TIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRY   71 (73)
T ss_pred             EEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHH
Confidence            589999999999999999999999999887632  23346778888899999999988777665554443

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=96.63  E-value=0.0052  Score=55.74  Aligned_cols=57  Identities=30%  Similarity=0.494  Sum_probs=44.7

Q ss_pred             EEEEEcCCChhHHHHHHHHHh------cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeec
Q 002682          427 VILYTRLGCQESREVRLFLYW------KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMG  487 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e------~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~IG  487 (893)
                      +++|..+||+.|+.+...|++      .++.|..+|++.+++    +....|..++|.+++  +|+.++
T Consensus        17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~----l~~~~~v~~vPt~~i~~~g~~v~   81 (97)
T cd02949          17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQE----IAEAAGIMGTPTVQFFKDKELVK   81 (97)
T ss_pred             EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHH----HHHHCCCeeccEEEEEECCeEEE
Confidence            778899999999999988876      357788899887665    445568889998876  676653

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>PHA02278 thioredoxin-like protein

Probab=96.48  E-value=0.0083  Score=56.37  Aligned_cols=60  Identities=12%  Similarity=0.194  Sum_probs=44.6

Q ss_pred             EEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeee
Q 002682          427 VILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILM  486 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~I  486 (893)
                      |+-|..+||+.|+.+...|.+.      .+++..+||+.++....++.+..+..++|++++  ||+.+
T Consensus        18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v   85 (103)
T PHA02278         18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLV   85 (103)
T ss_pred             EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEE
Confidence            7778899999999988777553      356888899865422344667778889998765  78765

>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=96.42  E-value=0.0085  Score=51.34  Aligned_cols=69  Identities=14%  Similarity=0.046  Sum_probs=55.0

Q ss_pred             EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCC--hhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHh
Q 002682          428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE  497 (893)
Q Consensus       428 vLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d--~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~e  497 (893)
                      ++|+.+. +.|.+++-+|...|++|+.+.++..  .....++.+.+...+||++..+|..+.....+.++..
T Consensus         2 ~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~   72 (76)
T cd03046           2 TLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLA   72 (76)
T ss_pred             EEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence            5788776 6799999999999999999888643  2234667778888999999999988887777766654

cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=96.34  E-value=0.011  Score=58.09  Aligned_cols=86  Identities=15%  Similarity=0.145  Sum_probs=56.0

Q ss_pred             EEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE---cCeeecccHhHHHhHh
Q 002682          427 VILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF---NEILMGGLSELKALDE  497 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI---nGk~IGG~DeL~el~e  497 (893)
                      |+.|..+||++|+.....|.+.      .+.|..++++...  ...+.+..|...+|++++   +|+.++-+.-   ...
T Consensus        24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~--~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G---~~~   98 (142)
T cd02950          24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK--WLPEIDRYRVDGIPHFVFLDREGNEEGQSIG---LQP   98 (142)
T ss_pred             EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc--cHHHHHHcCCCCCCEEEEECCCCCEEEEEeC---CCC
Confidence            7788899999999888777542      3567777776432  123455678899998775   4766542221   111


Q ss_pred             cCcchHHHHHHHhcCCCCCC
Q 002682          498 SGKLDEKIEYLITEAPPFEA  517 (893)
Q Consensus       498 sGeL~~lLk~~~~~aps~da  517 (893)
                      ..+|..+|+.+..+.+++.+
T Consensus        99 ~~~l~~~l~~l~~~~~~~~~  118 (142)
T cd02950          99 KQVLAQNLDALVAGEPLPYA  118 (142)
T ss_pred             HHHHHHHHHHHHcCCCCCcc
Confidence            23567778888877766543

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.34  E-value=0.0054  Score=71.88  Aligned_cols=58  Identities=22%  Similarity=0.300  Sum_probs=46.1

Q ss_pred             cEEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeec
Q 002682          426 RVILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMG  487 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e~-----GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IG  487 (893)
                      .|++|.+++||||.+|++.+.+.     .|..+.+|....|+    +.+.++..+||++|+||+.+.
T Consensus       119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~----~~~~~~v~~VP~~~i~~~~~~  181 (517)
T PRK15317        119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQD----EVEARNIMAVPTVFLNGEEFG  181 (517)
T ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHh----HHHhcCCcccCEEEECCcEEE
Confidence            58899999999999999998764     45566777666655    445678899999999997653

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=96.30  E-value=0.0058  Score=71.66  Aligned_cols=58  Identities=22%  Similarity=0.270  Sum_probs=45.3

Q ss_pred             cEEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeec
Q 002682          426 RVILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMG  487 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e~-----GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IG  487 (893)
                      .|++|.+++||||..|++.+.+.     .|..+.+|....++    +.+.++..+||++||||+.++
T Consensus       120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~----~~~~~~v~~VP~~~i~~~~~~  182 (515)
T TIGR03140       120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQD----EVEALGIQGVPAVFLNGEEFH  182 (515)
T ss_pred             EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHH----HHHhcCCcccCEEEECCcEEE
Confidence            58999999999999999998775     44455666555554    445678889999999997654

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK15113 glutathione S-transferase; Provisional

Probab=96.29  E-value=0.012  Score=60.85  Aligned_cols=61  Identities=13%  Similarity=0.132  Sum_probs=50.4

Q ss_pred             cEEEEEcC--CChhHHHHHHHHHhcCCceEEEEcCCC--hhHHHHHHHHhCCCCcceEEEcCeee
Q 002682          426 RVILYTRL--GCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFFNEILM  486 (893)
Q Consensus       426 kVvLYTks--gCP~CkrAK~lL~e~GI~YeeIDId~d--~e~r~EL~k~sG~~TVPqIFInGk~I  486 (893)
                      .+++|+.+  .||+|.+++-+|..+||+|+.+.++..  +....++.+++....||++..+|..|
T Consensus         5 ~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l   69 (214)
T PRK15113          5 AITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFEL   69 (214)
T ss_pred             eEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEE
Confidence            37899976  799999999999999999999888642  23346788889999999999887544

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=96.26  E-value=0.0073  Score=71.58  Aligned_cols=56  Identities=18%  Similarity=0.306  Sum_probs=46.5

Q ss_pred             cEEEEEcCCChhHHHHHHHHHh----c-CCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCee
Q 002682          426 RVILYTRLGCQESREVRLFLYW----K-RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEIL  485 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e----~-GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~  485 (893)
                      .|.+|..++||||.++.+.+++    . +|..+.+|+...++    +.+.+|..+||.++|||+.
T Consensus       479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~----~~~~~~v~~vP~~~i~~~~  539 (555)
T TIGR03143       479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPD----LKDEYGIMSVPAIVVDDQQ  539 (555)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHH----HHHhCCceecCEEEECCEE
Confidence            5889999999999988876654    4 79999999987765    4456799999999999964

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR00862 O-ClC intracellular chloride channel protein

Probab=96.24  E-value=0.013  Score=62.79  Aligned_cols=60  Identities=15%  Similarity=0.295  Sum_probs=48.4

Q ss_pred             CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHH
Q 002682          433 LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELK  493 (893)
Q Consensus       433 sgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~  493 (893)
                      ..||+|++++..|..+|++|+.+.|+.... .+++.+++...+||++..+|..|.....+.
T Consensus        17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~-~~~fl~inP~g~vPvL~~~g~~l~ES~aI~   76 (236)
T TIGR00862        17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRK-PEDLQNLAPGTHPPFLTYNTEVKTDVNKIE   76 (236)
T ss_pred             CCCHhHHHHHHHHHHcCCCcEEEEECCCCC-CHHHHHHCcCCCCCEEEECCEEeecHHHHH
Confidence            579999999999999999999988875432 367888898999999998887765544333

These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=96.23  E-value=0.013  Score=56.61  Aligned_cols=57  Identities=21%  Similarity=0.153  Sum_probs=44.4

Q ss_pred             EEEEEcCCChhHHHHHHHHHhc-----C-CceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeec
Q 002682          427 VILYTRLGCQESREVRLFLYWK-----R-LRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMG  487 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~-----G-I~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~IG  487 (893)
                      |+-|+.+|||.|+...-.|.+.     + +.|-.+|++..++    +.+..|..++|++++  +|+.++
T Consensus        18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~----la~~~~V~~iPTf~~fk~G~~v~   82 (114)
T cd02954          18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD----FNKMYELYDPPTVMFFFRNKHMK   82 (114)
T ss_pred             EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH----HHHHcCCCCCCEEEEEECCEEEE
Confidence            6669999999999998888653     2 4678889988765    456678899998765  787664

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>PLN02473 glutathione S-transferase

Probab=96.17  E-value=0.013  Score=60.09  Aligned_cols=69  Identities=16%  Similarity=0.171  Sum_probs=54.3

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCC--hhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHh
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKAL  495 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d--~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el  495 (893)
                      ++||+.+.||+|.+++-+|..+|++|+.+.++..  +....++.+++...+||++..+|..|....-+.++
T Consensus         3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~Y   73 (214)
T PLN02473          3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARY   73 (214)
T ss_pred             eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHH
Confidence            6799999999999999999999999998877532  23345566778889999999888777665544433

>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.17  E-value=0.012  Score=53.07  Aligned_cols=66  Identities=18%  Similarity=0.231  Sum_probs=48.6

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhH-HHHH---------H--HHhCCCCcceEEEc-CeeecccHhHH
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSR-KMEL---------E--KFAGSSAVPKVFFN-EILMGGLSELK  493 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~-r~EL---------~--k~sG~~TVPqIFIn-Gk~IGG~DeL~  493 (893)
                      -+||....||.|.-++++|++.+|.|+.++|...-.. ++.|         .  +-.|.-.+|.+.++ |+.|-| ++|.
T Consensus         4 p~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~-~Dl~   82 (85)
T COG4545           4 PKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG-DDLS   82 (85)
T ss_pred             ceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe-chhh
Confidence            3899999999999999999999999999999643222 2111         1  22477889999986 565555 4443

>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.12  E-value=0.016  Score=62.06  Aligned_cols=66  Identities=20%  Similarity=0.074  Sum_probs=53.5

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHh-CCCCcceEEEcCeeecccHh
Q 002682          425 GRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA-GSSAVPKVFFNEILMGGLSE  491 (893)
Q Consensus       425 gkVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~s-G~~TVPqIFInGk~IGG~De  491 (893)
                      +.|.||+.-.|||.+||+-.|+.+||+|+.++++... --+.|.+.+ -+..||++..||+.|+-.-.
T Consensus         8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~-Ks~~ll~~np~hkKVPvL~Hn~k~i~ESli   74 (231)
T KOG0406|consen    8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTN-KSEWLLEKNPVHKKVPVLEHNGKPICESLI   74 (231)
T ss_pred             CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCC-CCHHHHHhccccccCCEEEECCceehhhHH
Confidence            5699999999999999999999999999999887542 223455655 56899999999998654433

>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs

Probab=96.06  E-value=0.02  Score=49.76  Aligned_cols=64  Identities=16%  Similarity=0.163  Sum_probs=51.7

Q ss_pred             cCCChhHHHHHHHHHhcCCceEEEEcCCCh-hHHHHHHHHhCCCCcceEEEcCeeecccHhHHHh
Q 002682          432 RLGCQESREVRLFLYWKRLRYVEINIDVYP-SRKMELEKFAGSSAVPKVFFNEILMGGLSELKAL  495 (893)
Q Consensus       432 ksgCP~CkrAK~lL~e~GI~YeeIDId~d~-e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el  495 (893)
                      ...||+|.+++-+|..+|++|+.+.++... ....++.+.+....+|++..+|..+.....+.++
T Consensus         7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~Y   71 (73)
T cd03043           7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEY   71 (73)
T ss_pred             CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHH
Confidence            467999999999999999999998886432 2346788888899999999999887776665554

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=96.05  E-value=0.025  Score=53.00  Aligned_cols=64  Identities=17%  Similarity=0.282  Sum_probs=46.8

Q ss_pred             EEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeecccHhHHHh
Q 002682          427 VILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGLSELKAL  495 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~-----GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~IGG~DeL~el  495 (893)
                      |+.|..+||+.|+.....|++.     ++.|..+|++..     ++.+..+..++|++++  +|+.++.+..+..+
T Consensus        28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-----~l~~~~~i~~~Pt~~~f~~G~~v~~~~G~~~~   98 (113)
T cd02957          28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-----FLVNYLDIKVLPTLLVYKNGELIDNIVGFEEL   98 (113)
T ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-----HHHHhcCCCcCCEEEEEECCEEEEEEecHHHh
Confidence            6678899999999998888652     566777777643     5666678899998754  88887655544444

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=96.03  E-value=0.021  Score=54.03  Aligned_cols=56  Identities=23%  Similarity=0.309  Sum_probs=38.2

Q ss_pred             cEEEEEcCCChhHHHHHHHHH---------hcCCceEEEEcCCChhH---------HHHHHHHhCCCCcceEEE
Q 002682          426 RVILYTRLGCQESREVRLFLY---------WKRLRYVEINIDVYPSR---------KMELEKFAGSSAVPKVFF  481 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~---------e~GI~YeeIDId~d~e~---------r~EL~k~sG~~TVPqIFI  481 (893)
                      -++.|+.+||++|++....+.         ..++.+..+|++.+...         ..++....+..++|++++
T Consensus        17 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~   90 (125)
T cd02951          17 LLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVIF   90 (125)
T ss_pred             EEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEEE
Confidence            378899999999998875442         12455667777654211         245666778899999654

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>PTZ00051 thioredoxin; Provisional

Probab=95.91  E-value=0.025  Score=50.66  Aligned_cols=58  Identities=10%  Similarity=0.273  Sum_probs=43.1

Q ss_pred             EEEEEcCCChhHHHHHHHHHh-----cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeecc
Q 002682          427 VILYTRLGCQESREVRLFLYW-----KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGG  488 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e-----~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~IGG  488 (893)
                      ++.|..+||+.|++....|..     .++.|..+|++....    +.+..|...+|++++  +|+.++.
T Consensus        22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~~   86 (98)
T PTZ00051         22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSE----VAEKENITSMPTFKVFKNGSVVDT   86 (98)
T ss_pred             EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHH----HHHHCCCceeeEEEEEeCCeEEEE
Confidence            778899999999999888876     357788888865443    455568888998765  6765543

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=95.91  E-value=0.025  Score=51.92  Aligned_cols=66  Identities=20%  Similarity=0.278  Sum_probs=39.6

Q ss_pred             cEEEEEcCCChhHHHHHHHHHh-------c--CCceEEEEcCCChh----------------HHHHHHHHhCCCCcceEE
Q 002682          426 RVILYTRLGCQESREVRLFLYW-------K--RLRYVEINIDVYPS----------------RKMELEKFAGSSAVPKVF  480 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e-------~--GI~YeeIDId~d~e----------------~r~EL~k~sG~~TVPqIF  480 (893)
                      .|++|+.+|||||+++...+..       .  ++.+..++++....                ...++....|...+|+++
T Consensus         8 ~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtPt~~   87 (112)
T PF13098_consen    8 IVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTPTIV   87 (112)
T ss_dssp             EEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSSEEE
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCccCEEE
Confidence            5889999999999988776653       1  34455555554321                124567777999999998


Q ss_pred             Ec---Ce---eecccHh
Q 002682          481 FN---EI---LMGGLSE  491 (893)
Q Consensus       481 In---Gk---~IGG~De  491 (893)
                      +-   |+   .+.|+-.
T Consensus        88 ~~d~~G~~v~~~~G~~~  104 (112)
T PF13098_consen   88 FLDKDGKIVYRIPGYLS  104 (112)
T ss_dssp             ECTTTSCEEEEEESS--
T ss_pred             EEcCCCCEEEEecCCCC
Confidence            73   66   4456543

...

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=95.85  E-value=0.025  Score=53.56  Aligned_cols=59  Identities=14%  Similarity=0.184  Sum_probs=45.4

Q ss_pred             EEEEEcCCChhHHHHHHHHHh-----cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeeccc
Q 002682          427 VILYTRLGCQESREVRLFLYW-----KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGL  489 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e-----~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~IGG~  489 (893)
                      |+.|..+||+.|+.+...|.+     .++.|..+|++..++    +.+..+..++|++.+  +|+.++-.
T Consensus        26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~----l~~~~~v~~vPt~l~fk~G~~v~~~   91 (113)
T cd02989          26 VCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPF----LVEKLNIKVLPTVILFKNGKTVDRI   91 (113)
T ss_pred             EEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHH----HHHHCCCccCCEEEEEECCEEEEEE
Confidence            777888999999999988866     357788888887665    445668888998765  78766543

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=95.84  E-value=0.038  Score=51.07  Aligned_cols=60  Identities=18%  Similarity=0.153  Sum_probs=44.6

Q ss_pred             EEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeec
Q 002682          427 VILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMG  487 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~-----GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~IG  487 (893)
                      |+.|..+||+.|+.....|.+.     ++.|..+|++.++.. .++.+..+...+|++++  +|+.++
T Consensus        19 vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~-~~l~~~~~V~~~Pt~~~~~~G~~v~   85 (103)
T cd02985          19 VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDST-MELCRREKIIEVPHFLFYKDGEKIH   85 (103)
T ss_pred             EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHH-HHHHHHcCCCcCCEEEEEeCCeEEE
Confidence            7778899999999888877652     567888888766532 34666678899997765  776553

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []

Probab=95.83  E-value=0.015  Score=54.70  Aligned_cols=42  Identities=21%  Similarity=0.332  Sum_probs=30.8

Q ss_pred             EEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHh
Q 002682          430 YTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA  471 (893)
Q Consensus       430 YTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~s  471 (893)
                      |+.+.|.-|++|+++|+++|++|+.+|+...|--+++|.++.
T Consensus         1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l   42 (110)
T PF03960_consen    1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELL   42 (110)
T ss_dssp             EE-TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHH
T ss_pred             CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHH
Confidence            889999999999999999999999999988776666665543

This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....

>TIGR01068 thioredoxin thioredoxin

Probab=95.76  E-value=0.046  Score=48.35  Aligned_cols=57  Identities=16%  Similarity=0.338  Sum_probs=42.5

Q ss_pred             EEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeec
Q 002682          427 VILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMG  487 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~IG  487 (893)
                      ++.|..+||++|..+...|.+.      .+.|-.+|++.++.    +.+..|..++|++++  +|+.+.
T Consensus        18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~P~~~~~~~g~~~~   82 (101)
T TIGR01068        18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPD----IAAKYGIRSIPTLLLFKNGKEVD   82 (101)
T ss_pred             EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHH----HHHHcCCCcCCEEEEEeCCcEee
Confidence            7778889999999988777552      36777888876654    445568899999887  676543

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>PRK09381 trxA thioredoxin; Provisional

Probab=95.62  E-value=0.043  Score=50.45  Aligned_cols=59  Identities=17%  Similarity=0.251  Sum_probs=43.7

Q ss_pred             EEEEEcCCChhHHHHHHHHHh------cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeeccc
Q 002682          427 VILYTRLGCQESREVRLFLYW------KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGL  489 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e------~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~IGG~  489 (893)
                      |+.|..+|||.|+.....|++      .++.+-.+|++..+..    .+..+..++|++++  +|+.++-+
T Consensus        25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~G~~~~~~   91 (109)
T PRK09381         25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT----APKYGIRGIPTLLLFKNGEVAATK   91 (109)
T ss_pred             EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhH----HHhCCCCcCCEEEEEeCCeEEEEe
Confidence            778889999999999877754      2456777888766553    44568899998866  78776533

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=95.57  E-value=0.062  Score=47.93  Aligned_cols=56  Identities=14%  Similarity=0.265  Sum_probs=39.6

Q ss_pred             EEEEEcCCChhHHHHHHHHHh------cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeee
Q 002682          427 VILYTRLGCQESREVRLFLYW------KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILM  486 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e------~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~I  486 (893)
                      ++.|..+||+.|+++...|.+      ..+.+-.+|++..++    +.+..|...+|++++  +|+.+
T Consensus        18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~Pt~~~~~~g~~~   81 (97)
T cd02984          18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPE----ISEKFEITAVPTFVFFRNGTIV   81 (97)
T ss_pred             EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHH----HHHhcCCccccEEEEEECCEEE
Confidence            678889999999999888865      245555666654443    555678889997654  66644

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=95.48  E-value=0.062  Score=47.80  Aligned_cols=58  Identities=19%  Similarity=0.314  Sum_probs=43.8

Q ss_pred             cEEEEEcCCChhHHHHHHHHHh----c--CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeec
Q 002682          426 RVILYTRLGCQESREVRLFLYW----K--RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMG  487 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e----~--GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~IG  487 (893)
                      -|+.|+.+||++|+..+..|.+    .  ++.|-.+|++..+.    +.+..+...+|++++  +|+.+.
T Consensus        20 vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~g~~~~   85 (103)
T PF00085_consen   20 VVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKE----LCKKYGVKSVPTIIFFKNGKEVK   85 (103)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHH----HHHHTTCSSSSEEEEEETTEEEE
T ss_pred             EEEEEeCCCCCccccccceecccccccccccccchhhhhccch----hhhccCCCCCCEEEEEECCcEEE
Confidence            3888899999999999987754    2  57777888876533    556678999999876  665553

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=95.37  E-value=0.021  Score=54.48  Aligned_cols=58  Identities=14%  Similarity=0.220  Sum_probs=39.0

Q ss_pred             EEEEEcCCChhHHHHHHHHHh------cCCceEEEEcCCChhHHHHHHHHhCC--CCcceEEE---cCeeec
Q 002682          427 VILYTRLGCQESREVRLFLYW------KRLRYVEINIDVYPSRKMELEKFAGS--SAVPKVFF---NEILMG  487 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e------~GI~YeeIDId~d~e~r~EL~k~sG~--~TVPqIFI---nGk~IG  487 (893)
                      ++.|+.+||++|+.....+.+      ....|..++++.+++...+   ..+.  ..+|++++   +|+.++
T Consensus        23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~---~~~~~g~~vPt~~f~~~~Gk~~~   91 (117)
T cd02959          23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDE---EFSPDGGYIPRILFLDPSGDVHP   91 (117)
T ss_pred             EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhh---hcccCCCccceEEEECCCCCCch
Confidence            667889999999999877766      3456888899866532221   2222  24898775   566554

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=95.25  E-value=0.041  Score=57.47  Aligned_cols=59  Identities=20%  Similarity=0.261  Sum_probs=42.9

Q ss_pred             cEEEEEc---CCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeee
Q 002682          426 RVILYTR---LGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILM  486 (893)
Q Consensus       426 kVvLYTk---sgCP~CkrAK~lL~e~-----GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~I  486 (893)
                      .|++|+.   +|||+|+.+..+|++.     ++.+..++++.+..  .++.+.+|..++|++.+  ||+.+
T Consensus        22 ~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~--~~l~~~~~V~~~Pt~~~f~~g~~~   90 (215)
T TIGR02187        22 EIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPED--KEEAEKYGVERVPTTIILEEGKDG   90 (215)
T ss_pred             EEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCccc--HHHHHHcCCCccCEEEEEeCCeee
Confidence            4778888   9999999999988664     34556777764322  34566779999999887  55544

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>TIGR01262 maiA maleylacetoacetate isomerase

Probab=95.24  E-value=0.027  Score=57.25  Aligned_cols=63  Identities=19%  Similarity=0.220  Sum_probs=50.4

Q ss_pred             EEEEcCCChhHHHHHHHHHhcCCceEEEEcCC-C--hhHHHHHHHHhCCCCcceEEEcCeeecccH
Q 002682          428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDV-Y--PSRKMELEKFAGSSAVPKVFFNEILMGGLS  490 (893)
Q Consensus       428 vLYTksgCP~CkrAK~lL~e~GI~YeeIDId~-d--~e~r~EL~k~sG~~TVPqIFInGk~IGG~D  490 (893)
                      +||+...||+|.+++-+|..+||+|+.+.++. .  .....++.+++...+||++..+|..+....
T Consensus         1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~   66 (210)
T TIGR01262         1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSL   66 (210)
T ss_pred             CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHH
Confidence            37888999999999999999999999988863 1  122356778888999999999887665443

Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.

>PLN02817 glutathione dehydrogenase (ascorbate)

Probab=95.18  E-value=0.035  Score=60.37  Aligned_cols=58  Identities=22%  Similarity=0.166  Sum_probs=45.8

Q ss_pred             CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHh
Q 002682          433 LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSE  491 (893)
Q Consensus       433 sgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~De  491 (893)
                      ..||+|.+++-+|.++|++|+.+.|+... ...++.+++...+||++..+|..|....-
T Consensus        71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~~-~~~~fl~iNP~GkVPvL~~d~~~L~ES~a  128 (265)
T PLN02817         71 GDCPFCQRVLLTLEEKHLPYDMKLVDLTN-KPEWFLKISPEGKVPVVKLDEKWVADSDV  128 (265)
T ss_pred             CCCcHHHHHHHHHHHcCCCCEEEEeCcCc-CCHHHHhhCCCCCCCEEEECCEEEecHHH
Confidence            45999999999999999999988776432 23457788888999999998876644433

>PLN02378 glutathione S-transferase DHAR1

Probab=95.17  E-value=0.043  Score=56.91  Aligned_cols=56  Identities=18%  Similarity=0.111  Sum_probs=44.8

Q ss_pred             CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccc
Q 002682          433 LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGL  489 (893)
Q Consensus       433 sgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~  489 (893)
                      ..||||.++.-+|..+|++|+.+.|+.... ..++.+++...+||++..+|..|.-.
T Consensus        18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~-~~~~l~inP~G~VPvL~~~~~~l~ES   73 (213)
T PLN02378         18 GDCPFSQRALLTLEEKSLTYKIHLINLSDK-PQWFLDISPQGKVPVLKIDDKWVTDS   73 (213)
T ss_pred             CCCcchHHHHHHHHHcCCCCeEEEeCcccC-CHHHHHhCCCCCCCEEEECCEEecCH
Confidence            459999999999999999999888764321 34678889999999998888655443

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.12  E-value=0.026  Score=56.90  Aligned_cols=56  Identities=18%  Similarity=0.209  Sum_probs=44.2

Q ss_pred             EEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeee
Q 002682          427 VILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILM  486 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~I  486 (893)
                      |+.|..+||..|+...-.|.++      .+.+-.+|++.+++.    ...++...||+|++  ||+.+
T Consensus        65 lVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~el----a~~Y~I~avPtvlvfknGe~~  128 (150)
T KOG0910|consen   65 LVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPEL----AEDYEISAVPTVLVFKNGEKV  128 (150)
T ss_pred             EEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccch----HhhcceeeeeEEEEEECCEEe
Confidence            7889999999999999888764      445677888887774    45678899999865  78654

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=95.12  E-value=0.067  Score=46.66  Aligned_cols=52  Identities=8%  Similarity=0.089  Sum_probs=37.7

Q ss_pred             cEEEEEcCCChhHHHHHHHHHh----c----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682          426 RVILYTRLGCQESREVRLFLYW----K----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF  481 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e----~----GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI  481 (893)
                      -+++|+.+||++|+.+...|..    .    ++.+..+|.+.++    .+.+..|.+.+|++++
T Consensus        18 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~i~~~Pt~~~   77 (101)
T cd02961          18 VLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANN----DLCSEYGVRGYPTIKL   77 (101)
T ss_pred             EEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchH----HHHHhCCCCCCCEEEE
Confidence            4889999999999998887754    2    3445556665433    4556678899998865

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>PLN02395 glutathione S-transferase

Probab=95.11  E-value=0.057  Score=55.23  Aligned_cols=64  Identities=11%  Similarity=0.120  Sum_probs=50.1

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCC--hhHHHHHHHHhCCCCcceEEEcCeeecccHh
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFFNEILMGGLSE  491 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d--~e~r~EL~k~sG~~TVPqIFInGk~IGG~De  491 (893)
                      ++||+.++|+ |.+++-+|.++|++|+.+.|+..  .....++.+++...+||++..+|..+....-
T Consensus         3 ~~ly~~~~~~-~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~a   68 (215)
T PLN02395          3 LKVYGPAFAS-PKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRA   68 (215)
T ss_pred             EEEEcCCcCc-HHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHH
Confidence            7899987764 89999999999999999887643  2233578888889999999988765554443

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=95.03  E-value=0.066  Score=48.46  Aligned_cols=52  Identities=12%  Similarity=0.166  Sum_probs=39.7

Q ss_pred             cEEEEEcCCChhHHHHHHHHHhc-------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682          426 RVILYTRLGCQESREVRLFLYWK-------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF  481 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e~-------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI  481 (893)
                      -++.|..+||++|++....|.+.       ++.+-.+|++.++.    +.+..+..++|++++
T Consensus        19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~----~~~~~~i~~~Pt~~~   77 (101)
T cd02994          19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG----LSGRFFVTALPTIYH   77 (101)
T ss_pred             EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh----HHHHcCCcccCEEEE
Confidence            38889999999999888777542       46677788776654    445568899999987

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=94.99  E-value=0.068  Score=49.26  Aligned_cols=54  Identities=9%  Similarity=0.132  Sum_probs=40.2

Q ss_pred             EEEEEcCCChhHHHHHHHHHhc------------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCe
Q 002682          427 VILYTRLGCQESREVRLFLYWK------------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEI  484 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~------------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk  484 (893)
                      ++.|..+||++|++....|++.            .+.|-.+|.+.++.    +.+..|..++|++++  +|+
T Consensus        22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~----l~~~~~v~~~Ptl~~~~~g~   89 (108)
T cd02996          22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESD----IADRYRINKYPTLKLFRNGM   89 (108)
T ss_pred             EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHH----HHHhCCCCcCCEEEEEeCCc
Confidence            7788899999999998777531            35667777776543    556679999998864  554

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=94.88  E-value=0.077  Score=48.83  Aligned_cols=55  Identities=18%  Similarity=0.172  Sum_probs=38.8

Q ss_pred             EEEEEcCCChhHHHHHHHHHh----cC---CceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeee
Q 002682          427 VILYTRLGCQESREVRLFLYW----KR---LRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILM  486 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e----~G---I~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~I  486 (893)
                      |+.|..+||+.|+.....|..    .+   +.|..+|++ .+    ++.+..+...+|++++  +|+.+
T Consensus        21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~----~~~~~~~v~~~Pt~~~~~~g~~~   84 (102)
T cd02948          21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TI----DTLKRYRGKCEPTFLFYKNGELV   84 (102)
T ss_pred             EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CH----HHHHHcCCCcCcEEEEEECCEEE
Confidence            778999999999988877754    22   456677776 33    2445678899997655  67643

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=94.83  E-value=0.076  Score=48.23  Aligned_cols=56  Identities=11%  Similarity=0.129  Sum_probs=40.4

Q ss_pred             cEEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCee
Q 002682          426 RVILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEIL  485 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e~------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~  485 (893)
                      -++.|..+||++|++....|.+.      .+.+-.+|++.++.    +.+..+...+|++++  +|+.
T Consensus        21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~~   84 (101)
T cd03003          21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM----LCRSQGVNSYPSLYVFPSGMN   84 (101)
T ss_pred             EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH----HHHHcCCCccCEEEEEcCCCC
Confidence            37789999999999988877542      24566788876654    445568889999854  5653

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.69  E-value=0.06  Score=55.22  Aligned_cols=57  Identities=25%  Similarity=0.239  Sum_probs=50.0

Q ss_pred             EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCCh-hHHHHHHHHhCCCCcceEEEcCe
Q 002682          428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP-SRKMELEKFAGSSAVPKVFFNEI  484 (893)
Q Consensus       428 vLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~-e~r~EL~k~sG~~TVPqIFInGk  484 (893)
                      ++|..+.+|+|.++.-+|.++|++|+.+.|+... ....++..++....||++..+|-
T Consensus         2 ~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~   59 (211)
T COG0625           2 KLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDG   59 (211)
T ss_pred             eeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCC
Confidence            5899999999999999999999999999988664 44577888999999999998874

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=94.64  E-value=0.11  Score=55.35  Aligned_cols=67  Identities=12%  Similarity=0.173  Sum_probs=45.0

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHhc---CCceEEE--EcC-CChh-H----------------------------------
Q 002682          425 GRVILYTRLGCQESREVRLFLYWK---RLRYVEI--NID-VYPS-R----------------------------------  463 (893)
Q Consensus       425 gkVvLYTksgCP~CkrAK~lL~e~---GI~YeeI--DId-~d~e-~----------------------------------  463 (893)
                      ..|++||-+.||||+++...|.++   ||.+..+  .+. .++. .                                  
T Consensus       109 ~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~~~v  188 (232)
T PRK10877        109 HVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCDVDI  188 (232)
T ss_pred             EEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccccchH
Confidence            369999999999999999888774   4655443  221 1110 0                                  


Q ss_pred             --HHHHHHHhCCCCcceEEE-cCeeecccHh
Q 002682          464 --KMELEKFAGSSAVPKVFF-NEILMGGLSE  491 (893)
Q Consensus       464 --r~EL~k~sG~~TVPqIFI-nGk~IGG~De  491 (893)
                        ..++.+..|.+.+|.+++ ||+.+.|+-.
T Consensus       189 ~~~~~la~~lgi~gTPtiv~~~G~~~~G~~~  219 (232)
T PRK10877        189 ADHYALGVQFGVQGTPAIVLSNGTLVPGYQG  219 (232)
T ss_pred             HHhHHHHHHcCCccccEEEEcCCeEeeCCCC
Confidence              011223347788999998 9999999744

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=94.52  E-value=0.1  Score=48.92  Aligned_cols=57  Identities=16%  Similarity=0.132  Sum_probs=40.9

Q ss_pred             cEEEEEcCCChhHHHHHHHHHh-------cCCceEEEEcCCChhHHHHHHHHhCCCCcceEE--EcCeee
Q 002682          426 RVILYTRLGCQESREVRLFLYW-------KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVF--FNEILM  486 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e-------~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIF--InGk~I  486 (893)
                      -++.|..+||+.|+.....|.+       .++.+-.+|++..+.    +....|..++|+++  .+|+.+
T Consensus        27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~----l~~~~~V~~~Pt~~i~~~g~~~   92 (111)
T cd02963          27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR----LARKLGAHSVPAIVGIINGQVT   92 (111)
T ss_pred             EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH----HHHHcCCccCCEEEEEECCEEE
Confidence            3778899999999877755532       357777888876554    44556889999877  467654

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=94.52  E-value=0.11  Score=46.47  Aligned_cols=56  Identities=20%  Similarity=0.290  Sum_probs=40.6

Q ss_pred             EEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeee
Q 002682          427 VILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILM  486 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~I  486 (893)
                      ++.|..+||+.|++....|.+.      .+.+-.+|++..+.    +.+..|...+|++++  +|+.+
T Consensus        16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----l~~~~~i~~~Pt~~~~~~g~~~   79 (96)
T cd02956          16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQ----IAQQFGVQALPTVYLFAAGQPV   79 (96)
T ss_pred             EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHH----HHHHcCCCCCCEEEEEeCCEEe
Confidence            7778899999999998777642      34456777766544    455668899999885  66554

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=94.49  E-value=0.12  Score=47.02  Aligned_cols=52  Identities=15%  Similarity=0.171  Sum_probs=38.4

Q ss_pred             cEEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682          426 RVILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF  481 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e~------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI  481 (893)
                      -++.|..+||+.|++....+.+.      ++.+-.+|++..++    +.+..|...+|++++
T Consensus        22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~i~~~Pt~~~   79 (104)
T cd03004          22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYES----LCQQANIRAYPTIRL   79 (104)
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH----HHHHcCCCcccEEEE
Confidence            37789999999999887766542      36677888876554    445568899998765

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=94.41  E-value=0.097  Score=46.58  Aligned_cols=52  Identities=12%  Similarity=0.148  Sum_probs=37.8

Q ss_pred             cEEEEEcCCChhHHHHHHHHHhc--------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682          426 RVILYTRLGCQESREVRLFLYWK--------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF  481 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e~--------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI  481 (893)
                      -|++|+.+||+.|++....|...        ++.+..+|++.++.    +.+..|...+|.+++
T Consensus        16 ~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~i~~~P~~~~   75 (102)
T TIGR01126        16 VLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKD----LASRFGVSGFPTIKF   75 (102)
T ss_pred             EEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHH----HHHhCCCCcCCEEEE
Confidence            38999999999999876666441        25566777765543    455678899998854

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=94.28  E-value=0.099  Score=50.34  Aligned_cols=60  Identities=20%  Similarity=0.151  Sum_probs=45.7

Q ss_pred             cEEEEEcCC--ChhHHHHHHHHHhc-----C-CceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeeccc
Q 002682          426 RVILYTRLG--CQESREVRLFLYWK-----R-LRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGL  489 (893)
Q Consensus       426 kVvLYTksg--CP~CkrAK~lL~e~-----G-I~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~IGG~  489 (893)
                      .|+.|+.+|  ||.|..+.-+|.+.     + +.|-.+|++.++    ++....|..++|++.+  ||+.++..
T Consensus        30 ~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~----~la~~f~V~sIPTli~fkdGk~v~~~   99 (111)
T cd02965          30 LVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ----ALAARFGVLRTPALLFFRDGRYVGVL   99 (111)
T ss_pred             EEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH----HHHHHcCCCcCCEEEEEECCEEEEEE
Confidence            488899996  99999999888653     2 446678887766    4566779999998765  88887654

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>PRK10357 putative glutathione S-transferase; Provisional

Probab=94.25  E-value=0.088  Score=53.46  Aligned_cols=58  Identities=14%  Similarity=0.144  Sum_probs=46.0

Q ss_pred             EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE-cCeee
Q 002682          428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF-NEILM  486 (893)
Q Consensus       428 vLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI-nGk~I  486 (893)
                      ++|+.+.||++.+++-+|..+||+|+.+.++.... ..++.+++...+||++.. +|..+
T Consensus         2 ~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~-~~~~~~~nP~g~vP~L~~~~g~~l   60 (202)
T PRK10357          2 KLIGSYTSPFVRKISILLLEKGITFEFVNELPYNA-DNGVAQYNPLGKVPALVTEEGECW   60 (202)
T ss_pred             eeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCC-chhhhhcCCccCCCeEEeCCCCee
Confidence            58999999999999999999999999988864321 234556788899999985 45444

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=94.21  E-value=0.15  Score=54.43  Aligned_cols=56  Identities=9%  Similarity=0.137  Sum_probs=40.4

Q ss_pred             EEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeee
Q 002682          427 VILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILM  486 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~I  486 (893)
                      ++.|..+||++|++....+++.      .+.+..+|++.++    ++.+..|...+|++++  +|+.+
T Consensus        56 lV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~----~l~~~~~I~~~PTl~~f~~G~~v  119 (224)
T PTZ00443         56 FVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRAL----NLAKRFAIKGYPTLLLFDKGKMY  119 (224)
T ss_pred             EEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccH----HHHHHcCCCcCCEEEEEECCEEE
Confidence            7788999999999998877553      2445566666554    3556678899998764  67655

>PRK10996 thioredoxin 2; Provisional

Probab=94.18  E-value=0.17  Score=49.56  Aligned_cols=56  Identities=18%  Similarity=0.304  Sum_probs=41.2

Q ss_pred             EEEEEcCCChhHHHHHHHHHh----c--CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeee
Q 002682          427 VILYTRLGCQESREVRLFLYW----K--RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILM  486 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e----~--GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~I  486 (893)
                      ++.|+.+||+.|++....|..    .  ++.+-.+|++..+.    +.+..|..++|++++  +|+.+
T Consensus        56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~----l~~~~~V~~~Ptlii~~~G~~v  119 (139)
T PRK10996         56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERE----LSARFRIRSIPTIMIFKNGQVV  119 (139)
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHH----HHHhcCCCccCEEEEEECCEEE
Confidence            788999999999988766654    2  45566777776654    455668889998876  67654

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=94.17  E-value=0.12  Score=53.01  Aligned_cols=58  Identities=14%  Similarity=0.214  Sum_probs=42.6

Q ss_pred             EEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeeccc
Q 002682          427 VILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGL  489 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~-----GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~IGG~  489 (893)
                      |+-|..+||+.|+.+...|..+     .+.|..||++..     ++....+..++|++++  +|+.++.+
T Consensus        87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-----~l~~~f~v~~vPTlllyk~G~~v~~~  151 (175)
T cd02987          87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-----GASDEFDTDALPALLVYKGGELIGNF  151 (175)
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-----hhHHhCCCCCCCEEEEEECCEEEEEE
Confidence            6668889999999888777553     466777777642     5666778899997664  88877533

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=94.17  E-value=0.13  Score=47.86  Aligned_cols=54  Identities=9%  Similarity=0.071  Sum_probs=37.4

Q ss_pred             cEEEEEcCCChhHHHHHHHHHhc-------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682          426 RVILYTRLGCQESREVRLFLYWK-------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF  481 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e~-------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI  481 (893)
                      -++.|..+|||+|++....|.+.       ++.+-.+|++.+..  ....+..|...+|++++
T Consensus        24 vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~--~~~~~~~~v~~~Pti~~   84 (109)
T cd02993          24 TLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQR--EFAKEELQLKSFPTILF   84 (109)
T ss_pred             EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccch--hhHHhhcCCCcCCEEEE
Confidence            38889999999999998877552       45666777765211  11233468889998863

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=94.11  E-value=0.25  Score=43.64  Aligned_cols=69  Identities=16%  Similarity=0.075  Sum_probs=49.9

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHH--HhCCCCcceEEEcCeeecccHhHHHhH
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEK--FAGSSAVPKVFFNEILMGGLSELKALD  496 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k--~sG~~TVPqIFInGk~IGG~DeL~el~  496 (893)
                      +++|..+.++.|.+++-+|...|++|+.+.++..+... ++..  .....+||++.+||..+....-+..+.
T Consensus         2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~-~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL   72 (79)
T cd03077           2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAEDLE-KLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYI   72 (79)
T ss_pred             CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHHHHH-hhccccCCCCCCCCEEEECCEEEeeHHHHHHHH
Confidence            57899999999999999999999999998886432211 1111  112569999999998776665555443

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=94.11  E-value=0.15  Score=47.21  Aligned_cols=51  Identities=20%  Similarity=0.303  Sum_probs=37.3

Q ss_pred             EEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcC-CChhHHHHHHHHhCCCCcceEEE
Q 002682          427 VILYTRLGCQESREVRLFLYWK-----RLRYVEINID-VYPSRKMELEKFAGSSAVPKVFF  481 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~-----GI~YeeIDId-~d~e~r~EL~k~sG~~TVPqIFI  481 (893)
                      ++.|..+||++|++..-.|++.     ++.+-.+|.+ ..+    .+.+..|...+|++++
T Consensus        22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~----~l~~~~~V~~~PT~~l   78 (100)
T cd02999          22 AVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKP----SLLSRYGVVGFPTILL   78 (100)
T ss_pred             EEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCH----HHHHhcCCeecCEEEE
Confidence            7789999999999888777553     4556666665 333    4556678899998764

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=93.93  E-value=0.13  Score=45.98  Aligned_cols=52  Identities=15%  Similarity=0.167  Sum_probs=36.7

Q ss_pred             cEEEEEcCCChhHHHHHHHHHh----c----CCceEEEEcCC-ChhHHHHHHHHhCCCCcceEEE
Q 002682          426 RVILYTRLGCQESREVRLFLYW----K----RLRYVEINIDV-YPSRKMELEKFAGSSAVPKVFF  481 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e----~----GI~YeeIDId~-d~e~r~EL~k~sG~~TVPqIFI  481 (893)
                      -+++|+.+||++|++....+..    .    ++.+-.+|.+. .+.    +.+..+..++|.+++
T Consensus        21 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~~i~~~P~~~~   81 (105)
T cd02998          21 VLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKD----LAKKYGVSGFPTLKF   81 (105)
T ss_pred             EEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchh----hHHhCCCCCcCEEEE
Confidence            3888999999999988777644    2    24455666655 333    445568889999876

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=93.91  E-value=0.19  Score=45.13  Aligned_cols=51  Identities=14%  Similarity=0.165  Sum_probs=37.2

Q ss_pred             EEEEEcCCChhHHHHHHHHHh------cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682          427 VILYTRLGCQESREVRLFLYW------KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF  481 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e------~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI  481 (893)
                      +++|..+||+.|++.+..|.+      ..+.+-.+|++..+.    +.+..|...+|++++
T Consensus        22 lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~~~i~~~P~~~~   78 (103)
T cd03001          22 LVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQS----LAQQYGVRGFPTIKV   78 (103)
T ss_pred             EEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHH----HHHHCCCCccCEEEE
Confidence            778889999999998876654      235567777765544    445568889998754

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional

Probab=93.89  E-value=0.16  Score=52.26  Aligned_cols=54  Identities=20%  Similarity=0.301  Sum_probs=44.9

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCC--hhHHHHHHHHhCCCCcceEEE
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFF  481 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d--~e~r~EL~k~sG~~TVPqIFI  481 (893)
                      +++|..+ +|+|.+++-+|..+||+|+.++|+..  +....++.+++....||++..
T Consensus         2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~   57 (215)
T PRK13972          2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVD   57 (215)
T ss_pred             eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEe
Confidence            5789877 69999999999999999999888643  223457888999999999987

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=93.80  E-value=0.14  Score=45.84  Aligned_cols=56  Identities=5%  Similarity=0.045  Sum_probs=38.3

Q ss_pred             cEEEEEcCCChhHHHHHHHHHhc---------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCee
Q 002682          426 RVILYTRLGCQESREVRLFLYWK---------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEIL  485 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e~---------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~  485 (893)
                      -++.|..+||+.|+.....|.+.         .+.+-.+|.+.++.    +.+..+...+|++++  +|+.
T Consensus        19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~~   85 (102)
T cd03005          19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRE----LCSEFQVRGYPTLLLFKDGEK   85 (102)
T ss_pred             EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChh----hHhhcCCCcCCEEEEEeCCCe
Confidence            37789999999999876655332         35566777765553    344567889998664  5543

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=93.69  E-value=0.21  Score=50.31  Aligned_cols=58  Identities=12%  Similarity=0.172  Sum_probs=41.6

Q ss_pred             EEEEEcCCChhHHHHHHHHHh-------cCCceEEEEcCCChhHHHHHHHHhCCCC------cceEE--EcCeeecc
Q 002682          427 VILYTRLGCQESREVRLFLYW-------KRLRYVEINIDVYPSRKMELEKFAGSSA------VPKVF--FNEILMGG  488 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e-------~GI~YeeIDId~d~e~r~EL~k~sG~~T------VPqIF--InGk~IGG  488 (893)
                      |+.|..+|||.|+.....|.+       .++.+-.+|++..++....    .+..+      +|+++  .+|+.++.
T Consensus        51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~----~~V~~~~~v~~~PT~ilf~~Gk~v~r  123 (152)
T cd02962          51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEK----FRVSTSPLSKQLPTIILFQGGKEVAR  123 (152)
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHH----cCceecCCcCCCCEEEEEECCEEEEE
Confidence            888999999999998877743       2477888999888765433    34444      88765  47776643

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=93.63  E-value=0.14  Score=46.57  Aligned_cols=54  Identities=9%  Similarity=0.093  Sum_probs=38.0

Q ss_pred             cEEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682          426 RVILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF  481 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e~------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI  481 (893)
                      -++.|..+||++|++....|.+.      .+.+..+|++.+.  ...+.+..|...+|++++
T Consensus        21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~--~~~~~~~~~i~~~Pt~~~   80 (109)
T cd03002          21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK--NKPLCGKYGVQGFPTLKV   80 (109)
T ss_pred             EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc--cHHHHHHcCCCcCCEEEE
Confidence            37889999999999887766543      3456667776532  223555678899998876

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=93.63  E-value=0.29  Score=50.96  Aligned_cols=58  Identities=16%  Similarity=0.256  Sum_probs=41.5

Q ss_pred             EEEEEcCCChhHHHH----HHHHHhcCCceEEEEcCCCh-----h----HHHHHHHHhCC--CCcceEEE---cCe
Q 002682          427 VILYTRLGCQESREV----RLFLYWKRLRYVEINIDVYP-----S----RKMELEKFAGS--SAVPKVFF---NEI  484 (893)
Q Consensus       427 VvLYTksgCP~CkrA----K~lL~e~GI~YeeIDId~d~-----e----~r~EL~k~sG~--~TVPqIFI---nGk  484 (893)
                      +++|..+|||+|++.    +++-+++|+++.-|+++...     -    ....+.+..|.  ..+|+.|+   +|+
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~  148 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL  148 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc
Confidence            889999999999987    66667789988888877431     1    12334555663  68999886   564

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=93.62  E-value=0.17  Score=49.13  Aligned_cols=57  Identities=7%  Similarity=0.085  Sum_probs=40.8

Q ss_pred             EEEEEcCCCh--hHH----------HHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEE--EcCeeec
Q 002682          427 VILYTRLGCQ--ESR----------EVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVF--FNEILMG  487 (893)
Q Consensus       427 VvLYTksgCP--~Ck----------rAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIF--InGk~IG  487 (893)
                      |+-|...||+  +|+          .|.++|+..++.+..+|++.+++    |.+.+|.+++|+++  .||+.+.
T Consensus        31 vv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~----La~~~~I~~iPTl~lfk~G~~v~  101 (120)
T cd03065          31 LLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAK----VAKKLGLDEEDSIYVFKDDEVIE  101 (120)
T ss_pred             EEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHH----HHHHcCCccccEEEEEECCEEEE
Confidence            4445555665  497          34566667789999999998765    45567889999875  5888664

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=93.41  E-value=0.18  Score=48.30  Aligned_cols=55  Identities=15%  Similarity=0.064  Sum_probs=38.9

Q ss_pred             EEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCe
Q 002682          427 VILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEI  484 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk  484 (893)
                      ++.|..+||++|+.++-.|.+.      .+.+-.+|++.++..   ..+..+..++|++.+  +|+
T Consensus        33 lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l---~~~~~~I~~~PTl~lf~~g~   95 (113)
T cd03006          33 LVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGK---CRKQKHFFYFPVIHLYYRSR   95 (113)
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHH---HHHhcCCcccCEEEEEECCc
Confidence            7889999999999998877664      255677888766542   223457778887754  554

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=93.35  E-value=0.19  Score=45.11  Aligned_cols=58  Identities=7%  Similarity=0.116  Sum_probs=38.0

Q ss_pred             EEEEEcCCChhHHHHHHHHHh--------cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeee
Q 002682          427 VILYTRLGCQESREVRLFLYW--------KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILM  486 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e--------~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~I  486 (893)
                      ++.|..+||++|++....|..        ..+.+..+|++.+.  ...+.+..|...+|++++  +|+.+
T Consensus        21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~~~~~i~~~Pt~~~~~~g~~~   88 (104)
T cd02997          21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE--HDALKEEYNVKGFPTFKYFENGKFV   88 (104)
T ss_pred             EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc--cHHHHHhCCCccccEEEEEeCCCee
Confidence            788999999999988655532        22456667776521  123455568889998754  45533

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=93.27  E-value=0.2  Score=48.84  Aligned_cols=64  Identities=9%  Similarity=0.055  Sum_probs=40.7

Q ss_pred             EEEEEcCCChhHHHHHH-HHHh--------cCCceEEEEcCCChhHHHHHH----HHhCCCCcceEEE---cCeeecccH
Q 002682          427 VILYTRLGCQESREVRL-FLYW--------KRLRYVEINIDVYPSRKMELE----KFAGSSAVPKVFF---NEILMGGLS  490 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~-lL~e--------~GI~YeeIDId~d~e~r~EL~----k~sG~~TVPqIFI---nGk~IGG~D  490 (893)
                      ++.|+.+||++|+.... .+..        .++-+..+|++..++....+.    ...|...+|++++   +|+.+-++.
T Consensus        19 ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~~   98 (124)
T cd02955          19 FLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGGT   98 (124)
T ss_pred             EEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeeee
Confidence            45588899999998854 2322        234455666666666544332    2457888998886   678875443

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=93.27  E-value=0.04  Score=53.93  Aligned_cols=55  Identities=15%  Similarity=0.161  Sum_probs=35.7

Q ss_pred             cEEEEEcCCChhHHHHHHHH----Hhc-CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682          426 RVILYTRLGCQESREVRLFL----YWK-RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF  481 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL----~e~-GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI  481 (893)
                      +|.+++-+|||.|.+..=+|    +.. ++++..+-.+.+++..+.+.. .|.+.+|++++
T Consensus        44 ~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-~g~~~IP~~I~  103 (129)
T PF14595_consen   44 NILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-NGGRSIPTFIF  103 (129)
T ss_dssp             EEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT--SS--SSEEEE
T ss_pred             EEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-CCCeecCEEEE
Confidence            69999999999998765444    445 788888877777766655554 68899999887

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=93.02  E-value=0.27  Score=42.54  Aligned_cols=61  Identities=15%  Similarity=0.097  Sum_probs=40.4

Q ss_pred             EEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChh-----------------------HHH-----HHHHHhC
Q 002682          427 VILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPS-----------------------RKM-----ELEKFAG  472 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~------GI~YeeIDId~d~e-----------------------~r~-----EL~k~sG  472 (893)
                      |++|+.+.||+|..+...|.+.      ++.+..+.+.....                       ...     .+....|
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g   80 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG   80 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence            5789999999999998888764      45566665532221                       001     1122347


Q ss_pred             CCCcceEEEcC-eeec
Q 002682          473 SSAVPKVFFNE-ILMG  487 (893)
Q Consensus       473 ~~TVPqIFInG-k~IG  487 (893)
                      ...+|.++++| .+.|
T Consensus        81 ~~g~Pt~v~~~~~~~~   96 (98)
T cd02972          81 VTGTPTFVVNGEKYSG   96 (98)
T ss_pred             CCCCCEEEECCEEcCC
Confidence            78999999999 4433

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria

Probab=92.96  E-value=0.4  Score=50.65  Aligned_cols=77  Identities=21%  Similarity=0.254  Sum_probs=41.9

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCc----eEEEEcC-------CCh-------hHHHHHHHHhCC--CCcceEEEcCe-e
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLR----YVEINID-------VYP-------SRKMELEKFAGS--SAVPKVFFNEI-L  485 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~----YeeIDId-------~d~-------e~r~EL~k~sG~--~TVPqIFInGk-~  485 (893)
                      |.|||..||+.|--|-++|.++.-.    --...|+       .|+       .++..+.+..|.  ...||++|||+ +
T Consensus         2 VELFTSQGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~~~   81 (202)
T PF06764_consen    2 VELFTSQGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGREH   81 (202)
T ss_dssp             EEEEE-TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTTEE
T ss_pred             eeEecCCCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCeee
Confidence            7899999999999999999775322    2223333       222       334445555544  45699999994 4


Q ss_pred             ecccHhHHHhHhcCcchHHHHHHHh
Q 002682          486 MGGLSELKALDESGKLDEKIEYLIT  510 (893)
Q Consensus       486 IGG~DeL~el~esGeL~~lLk~~~~  510 (893)
                      .+|.+.       ..+...|.....
T Consensus        82 ~~g~~~-------~~~~~ai~~~~~   99 (202)
T PF06764_consen   82 RVGSDR-------AAVEAAIQAARA   99 (202)
T ss_dssp             EETT-H-------HHHHHHHHHHHH
T ss_pred             eeccCH-------HHHHHHHHHhhc
Confidence            566653       244455555443

The function of this family is unknown.; PDB: 2AXO_A.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=92.75  E-value=0.27  Score=45.07  Aligned_cols=51  Identities=12%  Similarity=0.208  Sum_probs=35.7

Q ss_pred             EEEEEcCCChhHHHHHHHHHh----c---C--CceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682          427 VILYTRLGCQESREVRLFLYW----K---R--LRYVEINIDVYPSRKMELEKFAGSSAVPKVFF  481 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e----~---G--I~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI  481 (893)
                      ++.|..+|||+|++....|.+    .   +  +.+..+|++..+.    +.+..+..++|++++
T Consensus        19 lv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~I~~~Pt~~l   78 (104)
T cd03000          19 LVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSS----IASEFGVRGYPTIKL   78 (104)
T ss_pred             EEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHh----HHhhcCCccccEEEE
Confidence            778899999999977766643    2   3  4455566655443    445678899999865

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]

Probab=92.74  E-value=0.13  Score=53.45  Aligned_cols=66  Identities=14%  Similarity=0.054  Sum_probs=50.2

Q ss_pred             EEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE-cCeeecccHhHHHhH
Q 002682          429 LYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF-NEILMGGLSELKALD  496 (893)
Q Consensus       429 LYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI-nGk~IGG~DeL~el~  496 (893)
                      +|...-||||.+|+.++.-++||++.+-+..+.+.-.  .+..|+..||.+.- +|+.++-.=|+..+.
T Consensus         3 LYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp--~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~   69 (215)
T COG2999           3 LYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETP--IRMIGQKQVPILQKEDGRAMPESLDIVHYV   69 (215)
T ss_pred             eeEeccChHHHHHHHHhhccCCChhhheeccCcccCh--hhhhcccccceEEccccccchhhhHHHHHH
Confidence            8999999999999999999999999887765543221  34569999999885 577776655554443

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=92.71  E-value=0.41  Score=49.16  Aligned_cols=32  Identities=16%  Similarity=0.103  Sum_probs=25.2

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHh--cCCceEEEE
Q 002682          425 GRVILYTRLGCQESREVRLFLYW--KRLRYVEIN  456 (893)
Q Consensus       425 gkVvLYTksgCP~CkrAK~lL~e--~GI~YeeID  456 (893)
                      ..|++|+-+.||||+++...|..  .++.+..+.
T Consensus        79 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~  112 (197)
T cd03020          79 RVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFP  112 (197)
T ss_pred             EEEEEEECCCCccHHHHHHHHhhccCceEEEEEE
Confidence            36999999999999999999973  455555443

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>PTZ00057 glutathione s-transferase; Provisional

Probab=92.59  E-value=0.36  Score=49.67  Aligned_cols=73  Identities=14%  Similarity=0.189  Sum_probs=52.8

Q ss_pred             CCCcEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChh-H--HHHHH--HHhCCCCcceEEEcCeeecccHhHHHh
Q 002682          423 MKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPS-R--KMELE--KFAGSSAVPKVFFNEILMGGLSELKAL  495 (893)
Q Consensus       423 MkgkVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e-~--r~EL~--k~sG~~TVPqIFInGk~IGG~DeL~el  495 (893)
                      |.+.++||..+..+.|.+++-+|...|++|+.+.+....+ .  .+++.  ..+....||++.+||..+....-+..+
T Consensus         1 m~~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~Y   78 (205)
T PTZ00057          1 MAEEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRY   78 (205)
T ss_pred             CCCceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence            4456889999999999999999999999999998753221 1  11112  356788999999998766555444333

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=92.30  E-value=0.25  Score=48.01  Aligned_cols=55  Identities=11%  Similarity=0.144  Sum_probs=38.0

Q ss_pred             EEEEEc-------CCChhHHHHHHHHHh----c--CCceEEEEcCCChhH---HHHHHHHhCCC-CcceEEE
Q 002682          427 VILYTR-------LGCQESREVRLFLYW----K--RLRYVEINIDVYPSR---KMELEKFAGSS-AVPKVFF  481 (893)
Q Consensus       427 VvLYTk-------sgCP~CkrAK~lL~e----~--GI~YeeIDId~d~e~---r~EL~k~sG~~-TVPqIFI  481 (893)
                      |+.|..       +|||.|+.+.-.|++    .  ++.|..+|++..+..   ..++....+.. .+|++++
T Consensus        25 vV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~   96 (119)
T cd02952          25 FILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLR   96 (119)
T ss_pred             EEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEE
Confidence            666888       899999988766543    3  477888888764411   13454555666 8999886

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione

Probab=92.23  E-value=0.49  Score=41.56  Aligned_cols=67  Identities=19%  Similarity=0.290  Sum_probs=51.1

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCC--ChhHHHHHHHHhCC-CCcceEEEc-CeeecccHhHHHh
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDV--YPSRKMELEKFAGS-SAVPKVFFN-EILMGGLSELKAL  495 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~--d~e~r~EL~k~sG~-~TVPqIFIn-Gk~IGG~DeL~el  495 (893)
                      +++|..++  .|..++-+|...|++|+.+.++.  .....+++.+.... ..||.+..+ |..+.....+..+
T Consensus         3 l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~Y   73 (76)
T PF02798_consen    3 LTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRY   73 (76)
T ss_dssp             EEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHH
T ss_pred             EEEECCCC--chHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHH
Confidence            67787777  88999999999999999887763  33334778888888 999999999 8888766555544

The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=91.94  E-value=0.32  Score=48.73  Aligned_cols=54  Identities=15%  Similarity=0.076  Sum_probs=38.3

Q ss_pred             EEEEEcCCChhHHHHHHHHHhc-----C-CceEEEEcCCChhHHHHHHHHhCCC-CcceE-EE-cCe
Q 002682          427 VILYTRLGCQESREVRLFLYWK-----R-LRYVEINIDVYPSRKMELEKFAGSS-AVPKV-FF-NEI  484 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~-----G-I~YeeIDId~d~e~r~EL~k~sG~~-TVPqI-FI-nGk  484 (893)
                      |+-|+.+||+.|+..-.+|.+.     + +.+-.+||+..++..    ..++.+ .+|.+ |+ +|+
T Consensus        27 VvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla----~~y~I~~~~t~~~ffk~g~   89 (142)
T PLN00410         27 VIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFN----TMYELYDPCTVMFFFRNKH   89 (142)
T ss_pred             EEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHH----HHcCccCCCcEEEEEECCe
Confidence            6779999999999998888764     2 445788998877644    444555 44666 44 454

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=91.89  E-value=0.29  Score=54.43  Aligned_cols=61  Identities=15%  Similarity=0.263  Sum_probs=47.9

Q ss_pred             EEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEE--EcCeeecccHh
Q 002682          427 VILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVF--FNEILMGGLSE  491 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIF--InGk~IGG~De  491 (893)
                      ++.|..|||+.|+...-.|.+.      ++....+|++.++.+.    ...|..++|+|+  ++|+.|-||--
T Consensus        47 lV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vA----aqfgiqsIPtV~af~dGqpVdgF~G  115 (304)
T COG3118          47 LVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVA----AQFGVQSIPTVYAFKDGQPVDGFQG  115 (304)
T ss_pred             EEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHH----HHhCcCcCCeEEEeeCCcCccccCC
Confidence            6677889999999999998764      3345577888777643    456899999985  69999988864

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=91.29  E-value=0.51  Score=45.86  Aligned_cols=56  Identities=20%  Similarity=0.253  Sum_probs=41.2

Q ss_pred             EEEEEcCCChhHHHHHHHHHhc-----C-CceEEEEcCCChhHHHHHHHHhCCCCcce--EEEcCeee
Q 002682          427 VILYTRLGCQESREVRLFLYWK-----R-LRYVEINIDVYPSRKMELEKFAGSSAVPK--VFFNEILM  486 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~-----G-I~YeeIDId~d~e~r~EL~k~sG~~TVPq--IFInGk~I  486 (893)
                      |+=|+.+|||.|+..-.+|.+.     + +.|-.+|++..++..    +.++....|+  +|.||+|+
T Consensus        18 VVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva----~~y~I~amPtfvffkngkh~   81 (114)
T cd02986          18 VLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYT----QYFDISYIPSTIFFFNGQHM   81 (114)
T ss_pred             EEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHH----HhcCceeCcEEEEEECCcEE
Confidence            6679999999999998888774     3 557778888776643    4445555665  45688887

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=91.27  E-value=0.43  Score=42.67  Aligned_cols=50  Identities=6%  Similarity=0.140  Sum_probs=34.3

Q ss_pred             EEEEEcCCChhHHHHHHHHHhc--------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682          427 VILYTRLGCQESREVRLFLYWK--------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF  481 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~--------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI  481 (893)
                      ++.|..+||++|++....|.+.        .+.+..+|.+.+     ++....+..++|++++
T Consensus        22 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----~~~~~~~~~~~Pt~~~   79 (104)
T cd02995          22 LVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-----DVPSEFVVDGFPTILF   79 (104)
T ss_pred             EEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-----hhhhhccCCCCCEEEE
Confidence            7789999999999887777542        245566676543     2233345688998875

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi

Probab=91.20  E-value=0.67  Score=40.94  Aligned_cols=58  Identities=10%  Similarity=0.079  Sum_probs=45.6

Q ss_pred             CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHhc
Q 002682          433 LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDES  498 (893)
Q Consensus       433 sgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~es  498 (893)
                      +.+|+|-++..+|+-.|++|+.+... ++.       .+....+|.|..+|+.|+|++.+.+..++
T Consensus        14 s~sp~clk~~~~Lr~~~~~~~v~~~~-n~~-------~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~   71 (73)
T cd03078          14 SVDPECLAVLAYLKFAGAPLKVVPSN-NPW-------RSPTGKLPALLTSGTKISGPEKIIEYLRK   71 (73)
T ss_pred             cCCHHHHHHHHHHHcCCCCEEEEecC-CCC-------CCCCCccCEEEECCEEecChHHHHHHHHH
Confidence            45799999999999999999776432 222       23456799999999999999988887653

Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=91.08  E-value=0.45  Score=45.29  Aligned_cols=55  Identities=15%  Similarity=0.199  Sum_probs=40.5

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcC-----CceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCee
Q 002682          427 VILYTRLGCQESREVRLFLYWKR-----LRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEIL  485 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~G-----I~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~  485 (893)
                      |+-|+.+||+.|+...=++.++-     +.|-.+|++.    -.++.+..+...+|++.+  +|+-
T Consensus        25 VvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde----~~~~~~~~~V~~~PTf~f~k~g~~   86 (106)
T KOG0907|consen   25 VVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE----LEEVAKEFNVKAMPTFVFYKGGEE   86 (106)
T ss_pred             EEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc----CHhHHHhcCceEeeEEEEEECCEE
Confidence            55589999999999998888754     4456778876    334555668899998875  5543

>PRK11752 putative S-transferase; Provisional

Probab=90.79  E-value=0.59  Score=50.53  Aligned_cols=57  Identities=14%  Similarity=0.119  Sum_probs=45.2

Q ss_pred             cEEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCC--ChhHHHHHHHHhCCCCcceEEEcC
Q 002682          426 RVILYTRLGCQESREVRLFLYWK------RLRYVEINIDV--YPSRKMELEKFAGSSAVPKVFFNE  483 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e~------GI~YeeIDId~--d~e~r~EL~k~sG~~TVPqIFInG  483 (893)
                      .+++|+.+ ||+|.+++-+|.++      |++|+.+.|+.  ......++.+++...+||++..++
T Consensus        44 ~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~d  108 (264)
T PRK11752         44 PLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRS  108 (264)
T ss_pred             CeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCC
Confidence            47899964 99999999999997      88898877753  222345788888899999998753

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=90.74  E-value=1  Score=43.17  Aligned_cols=60  Identities=15%  Similarity=0.153  Sum_probs=38.0

Q ss_pred             EEEEEcCCChhHHHHHHHHHh-------c--CCceEEEEcCCChh---------------------HHHHHHHHhCCCCc
Q 002682          427 VILYTRLGCQESREVRLFLYW-------K--RLRYVEINIDVYPS---------------------RKMELEKFAGSSAV  476 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e-------~--GI~YeeIDId~d~e---------------------~r~EL~k~sG~~TV  476 (893)
                      ++.|..+||+.|+.....|.+       .  ++.+..++++..++                     ....+.+..|...+
T Consensus        21 ll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~i  100 (132)
T cd02964          21 GLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKVEGI  100 (132)
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcCCCCC
Confidence            566778999999986655532       2  45566666665431                     12345555678889


Q ss_pred             ceEE-Ec--Ceee
Q 002682          477 PKVF-FN--EILM  486 (893)
Q Consensus       477 PqIF-In--Gk~I  486 (893)
                      |+++ |+  |+.+
T Consensus       101 Pt~~lid~~G~iv  113 (132)
T cd02964         101 PTLVVLKPDGDVV  113 (132)
T ss_pred             CEEEEECCCCCEE
Confidence            9888 43  5544

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait

Probab=90.46  E-value=0.46  Score=42.61  Aligned_cols=58  Identities=14%  Similarity=0.073  Sum_probs=44.5

Q ss_pred             CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHHhHh
Q 002682          433 LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE  497 (893)
Q Consensus       433 sgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~el~e  497 (893)
                      +..+.|.++.-+|+..|++|+.+++...+.       .+....||.+.+||+.|+...-+..+..
T Consensus        15 ~~~~~~~kv~~~L~elglpye~~~~~~~~~-------~~P~GkVP~L~~dg~vI~eS~aIl~yL~   72 (74)
T cd03079          15 PDNASCLAVQTFLKMCNLPFNVRCRANAEF-------MSPSGKVPFIRVGNQIVSEFGPIVQFVE   72 (74)
T ss_pred             CCCCCHHHHHHHHHHcCCCcEEEecCCccc-------cCCCCcccEEEECCEEEeCHHHHHHHHh
Confidence            567789999999999999999886532111       2234689999999999998877766654

Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=90.35  E-value=0.57  Score=44.35  Aligned_cols=54  Identities=11%  Similarity=0.112  Sum_probs=36.2

Q ss_pred             cEEEEEcCCChhHHHHHHHHHhc---------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682          426 RVILYTRLGCQESREVRLFLYWK---------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF  481 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e~---------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI  481 (893)
                      -++.|..+||+.|+.....+.+.         .+.+-.+|.+.+.  -.++.+..|.+.+|++++
T Consensus        22 vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~i~~~Pt~~l   84 (114)
T cd02992          22 WLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE--NVALCRDFGVTGYPTLRY   84 (114)
T ss_pred             EEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh--hHHHHHhCCCCCCCEEEE
Confidence            37788999999999887776542         1444455543322  234556678899998876

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=90.28  E-value=0.51  Score=49.21  Aligned_cols=54  Identities=15%  Similarity=0.110  Sum_probs=40.3

Q ss_pred             EEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeec
Q 002682          427 VILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMG  487 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~-----GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~IG  487 (893)
                      |+-|+.+||+.|+.+...|.++     .+.|..+|++..       ....+...+|++++  ||+.++
T Consensus       106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~-------~~~~~i~~lPTlliyk~G~~v~  166 (192)
T cd02988         106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC-------IPNYPDKNLPTILVYRNGDIVK  166 (192)
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh-------HhhCCCCCCCEEEEEECCEEEE
Confidence            5668899999999998888664     466777777521       34568899998876  787654

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PRK10542 glutathionine S-transferase; Provisional

Probab=89.76  E-value=0.67  Score=46.86  Aligned_cols=62  Identities=15%  Similarity=0.190  Sum_probs=44.4

Q ss_pred             EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCCh---hHHHHHHHHhCCCCcceEEE-cCeeecccH
Q 002682          428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP---SRKMELEKFAGSSAVPKVFF-NEILMGGLS  490 (893)
Q Consensus       428 vLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~---e~r~EL~k~sG~~TVPqIFI-nGk~IGG~D  490 (893)
                      ++|+.++ +.+.+++-+|..+||+|+.+.|+...   ...+++.+++....||++.+ ||..|....
T Consensus         2 ~l~~~~~-s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~   67 (201)
T PRK10542          2 KLFYKPG-ACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGV   67 (201)
T ss_pred             ceeeccc-HHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHH
Confidence            4677553 44778888999999999988876432   12356888888999999987 555554433

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=89.55  E-value=1.2  Score=42.16  Aligned_cols=60  Identities=15%  Similarity=0.203  Sum_probs=38.1

Q ss_pred             EEEEEcCCChhHHHHHHHHHh-------c--CCceEEEEcCCChh--------------------HHHHHHHHhCCCCcc
Q 002682          427 VILYTRLGCQESREVRLFLYW-------K--RLRYVEINIDVYPS--------------------RKMELEKFAGSSAVP  477 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e-------~--GI~YeeIDId~d~e--------------------~r~EL~k~sG~~TVP  477 (893)
                      ++.|..+||+.|++....|.+       .  ++.+..++++...+                    ....+.+..|...+|
T Consensus        22 ll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P  101 (131)
T cd03009          22 GLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIEGIP  101 (131)
T ss_pred             EEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCCCCCC
Confidence            566778999999976665542       2  45566666664432                    123455566888899


Q ss_pred             eEEE---cCeee
Q 002682          478 KVFF---NEILM  486 (893)
Q Consensus       478 qIFI---nGk~I  486 (893)
                      .+++   +|+.+
T Consensus       102 ~~~lid~~G~i~  113 (131)
T cd03009         102 TLIILDADGEVV  113 (131)
T ss_pred             EEEEECCCCCEE
Confidence            8875   45543

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>TIGR02740 TraF-like TraF-like protein

Probab=89.51  E-value=0.71  Score=50.58  Aligned_cols=56  Identities=14%  Similarity=0.237  Sum_probs=40.4

Q ss_pred             cEEEEEcCCChhHHHHHHHH----HhcCCceEEEEcCCChh-------HHHHHHHHhCCCCcceEEE
Q 002682          426 RVILYTRLGCQESREVRLFL----YWKRLRYVEINIDVYPS-------RKMELEKFAGSSAVPKVFF  481 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL----~e~GI~YeeIDId~d~e-------~r~EL~k~sG~~TVPqIFI  481 (893)
                      -++.|..+|||+|+...-.|    +++|+.+..|+++..+.       .-..+.+..|...+|++|+
T Consensus       169 ~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~L  235 (271)
T TIGR02740       169 GLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFL  235 (271)
T ss_pred             EEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEE
Confidence            37788999999999877666    45688888888875321       0123455678999999986

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=89.45  E-value=0.62  Score=41.26  Aligned_cols=52  Identities=13%  Similarity=0.225  Sum_probs=29.4

Q ss_pred             EEEEEcCCChhHHHHHHHHHh-------cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682          427 VILYTRLGCQESREVRLFLYW-------KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF  481 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e-------~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI  481 (893)
                      +++|+.+||++|+..++.+-.       ..-.|..+.|+.+..........   ..+|+++|
T Consensus        21 lv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~---~~~P~~~~   79 (82)
T PF13899_consen   21 LVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR---QGYPTFFF   79 (82)
T ss_dssp             EEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH---CSSSEEEE
T ss_pred             EEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC---ccCCEEEE
Confidence            677899999999988766522       12224444444332222211122   33899886

...

>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]

Probab=89.40  E-value=0.77  Score=48.88  Aligned_cols=58  Identities=12%  Similarity=0.228  Sum_probs=46.7

Q ss_pred             CChhHHHHHHHHHhcCCceEE--EEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHHH
Q 002682          434 GCQESREVRLFLYWKRLRYVE--INIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKA  494 (893)
Q Consensus       434 gCP~CkrAK~lL~e~GI~Yee--IDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~e  494 (893)
                      .||+|+++-..|..+|++|..  ||+..-|+   ++..+++...+|.|.+||+.+-..+.+.+
T Consensus        20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp~---~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~   79 (221)
T KOG1422|consen   20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKPE---WFLDISPGGKPPVLKFDEKWVTDSDKIEE   79 (221)
T ss_pred             CChhHHHHHHHHHHcCCCceEEEeecCCCcH---HHHhhCCCCCCCeEEeCCceeccHHHHHH
Confidence            599999999999999999765  55544444   67889999999999999998877665433

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=89.23  E-value=1.6  Score=41.59  Aligned_cols=22  Identities=9%  Similarity=0.166  Sum_probs=18.5

Q ss_pred             cEEEEEcCCChhHHHHHHHHHh
Q 002682          426 RVILYTRLGCQESREVRLFLYW  447 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e  447 (893)
                      .|++|+-++||+|.+....|..
T Consensus         8 ~i~~f~D~~Cp~C~~~~~~l~~   29 (154)
T cd03023           8 TIVEFFDYNCGYCKKLAPELEK   29 (154)
T ss_pred             EEEEEECCCChhHHHhhHHHHH
Confidence            5999999999999888766655

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=87.31  E-value=2.2  Score=38.06  Aligned_cols=69  Identities=10%  Similarity=0.026  Sum_probs=45.5

Q ss_pred             EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCCh-hH--HHHHH-HH----hCCCCcceEEEcCeeecccHhHHHhH
Q 002682          428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP-SR--KMELE-KF----AGSSAVPKVFFNEILMGGLSELKALD  496 (893)
Q Consensus       428 vLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~-e~--r~EL~-k~----sG~~TVPqIFInGk~IGG~DeL~el~  496 (893)
                      ++|.-..-+.|.+++-+|...|++|+.+.|+... +.  ..+.. ..    ....+||++..+|..+.-..-+..+.
T Consensus         2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YL   78 (82)
T cd03075           2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYI   78 (82)
T ss_pred             EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHH
Confidence            3555555578889999999999999988886432 10  11221 11    15679999999887776555444443

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc

>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins

Probab=87.03  E-value=2.5  Score=41.67  Aligned_cols=71  Identities=15%  Similarity=0.224  Sum_probs=44.7

Q ss_pred             CCCcEEEEEcCCChh---H-----------HHHHHHHHhcCCceEEEEcCCChhHH------HHHHHHhCCCCcceEEEc
Q 002682          423 MKGRVILYTRLGCQE---S-----------REVRLFLYWKRLRYVEINIDVYPSRK------MELEKFAGSSAVPKVFFN  482 (893)
Q Consensus       423 MkgkVvLYTksgCP~---C-----------krAK~lL~e~GI~YeeIDId~d~e~r------~EL~k~sG~~TVPqIFIn  482 (893)
                      |+ +|.||--.-|..   |           ..+..+|++.|+.+..+|+..+|...      .++.+..|...+|.++||
T Consensus         1 M~-~i~ifepamCC~tGvCG~~vd~eL~~~a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlVd   79 (123)
T PF06953_consen    1 MK-KIEIFEPAMCCSTGVCGPSVDPELVRFAADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLVD   79 (123)
T ss_dssp             ---EEEEEE-S-SSTTS-SSSS--HHHHHHHHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEET
T ss_pred             CC-ceEEeccccccccCccCCCCCHHHHHHHHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEEC
Confidence            44 788998776533   3           46678889999999999999877443      234445699999999999


Q ss_pred             Ceee--cccHhHHH
Q 002682          483 EILM--GGLSELKA  494 (893)
Q Consensus       483 Gk~I--GG~DeL~e  494 (893)
                      |+.+  |.|-...+
T Consensus        80 Geiv~~G~YPt~eE   93 (123)
T PF06953_consen   80 GEIVKTGRYPTNEE   93 (123)
T ss_dssp             TEEEEESS---HHH
T ss_pred             CEEEEecCCCCHHH
Confidence            9886  66655433

ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.

>PF13728 TraF: F plasmid transfer operon protein

Probab=86.88  E-value=1.7  Score=46.25  Aligned_cols=56  Identities=16%  Similarity=0.290  Sum_probs=41.6

Q ss_pred             cEEEEEcCCChhHHHHHHHH----HhcCCceEEEEcCCC-----hhH--HHHHHHHhCCCCcceEEE
Q 002682          426 RVILYTRLGCQESREVRLFL----YWKRLRYVEINIDVY-----PSR--KMELEKFAGSSAVPKVFF  481 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL----~e~GI~YeeIDId~d-----~e~--r~EL~k~sG~~TVPqIFI  481 (893)
                      .+++|.+++||+|+...-+|    +++|+.+..|++|..     +..  -..+.+..|..++|.+|+
T Consensus       123 gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~L  189 (215)
T PF13728_consen  123 GLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFL  189 (215)
T ss_pred             EEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEE
Confidence            48889999999998776666    568999999999732     111  133455668899999997

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=86.76  E-value=1.9  Score=44.32  Aligned_cols=32  Identities=13%  Similarity=0.201  Sum_probs=22.2

Q ss_pred             EEEEEcCCChhHHHHHHHH----HhcCCceEEEEcC
Q 002682          427 VILYTRLGCQESREVRLFL----YWKRLRYVEINID  458 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL----~e~GI~YeeIDId  458 (893)
                      |+.|..+|||.|++....+    ++.++.+.-+..+
T Consensus        78 vl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~  113 (189)
T TIGR02661        78 LLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDG  113 (189)
T ss_pred             EEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence            6678899999998654333    4557776666543

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=86.43  E-value=0.99  Score=48.13  Aligned_cols=62  Identities=27%  Similarity=0.345  Sum_probs=47.0

Q ss_pred             CCCCCcEEEEEcCCChhHHHHHHHHHhcCCc--eEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecc
Q 002682          421 LVMKGRVILYTRLGCQESREVRLFLYWKRLR--YVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGG  488 (893)
Q Consensus       421 ~~MkgkVvLYTksgCP~CkrAK~lL~e~GI~--YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG  488 (893)
                      +.|.  |.||+..+|..|-..-+.|+++|+-  ++.++-...+..  .++  .|.-+||-||+||+.+-+
T Consensus         9 ~~~~--VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f~--~~~--~~V~SvP~Vf~DGel~~~   72 (265)
T COG5494           9 IEME--VKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPFL--AFE--KGVISVPSVFIDGELVYA   72 (265)
T ss_pred             hheE--EEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChHH--Hhh--cceeecceEEEcCeEEEc
Confidence            4565  9999999999999999999999885  555555444332  222  367789999999998744

>PTZ00062 glutaredoxin; Provisional

Probab=86.36  E-value=1.3  Score=46.94  Aligned_cols=52  Identities=15%  Similarity=0.119  Sum_probs=37.0

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcC-----CceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeecccH
Q 002682          427 VILYTRLGCQESREVRLFLYWKR-----LRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGLS  490 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~G-----I~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~IGG~D  490 (893)
                      |..|+.+|||.|+.+..+|.++-     +.|-.||.+            .+...||.+++  ||+.|+-+.
T Consensus        21 vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d------------~~V~~vPtfv~~~~g~~i~r~~   79 (204)
T PTZ00062         21 VLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA------------DANNEYGVFEFYQNSQLINSLE   79 (204)
T ss_pred             EEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc------------cCcccceEEEEEECCEEEeeee
Confidence            55566999999999999987753     445555443            67788996554  788776544

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=86.05  E-value=1.7  Score=51.38  Aligned_cols=53  Identities=8%  Similarity=0.065  Sum_probs=38.1

Q ss_pred             EEEEEcCCChhHHHHHHHHHhc-------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682          427 VILYTRLGCQESREVRLFLYWK-------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF  481 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~-------GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI  481 (893)
                      |+.|..+||++|+.....|.+.       ++.+..+|++.+..  .......+..++|+|++
T Consensus       375 LV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~~~~~~~~I~~~PTii~  434 (463)
T TIGR00424       375 LVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--EFAKQELQLGSFPTILF  434 (463)
T ss_pred             EEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--HHHHHHcCCCccceEEE
Confidence            7789999999999888777542       46677788876532  12234467888998875

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=85.76  E-value=1.8  Score=52.10  Aligned_cols=59  Identities=10%  Similarity=0.145  Sum_probs=41.7

Q ss_pred             EEEEEcCCChhHHHHHHHH-------Hh-cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE---cCee
Q 002682          427 VILYTRLGCQESREVRLFL-------YW-KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF---NEIL  485 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL-------~e-~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI---nGk~  485 (893)
                      ++.|+.+||+.|+..+...       +. .++.+..+|++.+.+...++.+..|...+|++++   +|+.
T Consensus       478 lVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~  547 (571)
T PRK00293        478 MLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQE  547 (571)
T ss_pred             EEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCC
Confidence            5668999999999875532       11 3566777888765544456777789999999876   4554

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=85.24  E-value=1.9  Score=38.76  Aligned_cols=52  Identities=19%  Similarity=0.278  Sum_probs=38.7

Q ss_pred             cEEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCC--CcceEEE
Q 002682          426 RVILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSS--AVPKVFF  481 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e~------GI~YeeIDId~d~e~r~EL~k~sG~~--TVPqIFI  481 (893)
                      -+++|..+||+.|...+..|.+.      .+.|..+|++..+.    +.+..|..  .+|++.+
T Consensus        15 ~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~----~~~~~~i~~~~~P~~~~   74 (103)
T cd02982          15 LLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGR----HLEYFGLKEEDLPVIAI   74 (103)
T ss_pred             EEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHH----HHHHcCCChhhCCEEEE
Confidence            37778899999999999988762      35677777765443    44455777  8999886

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=84.77  E-value=2.2  Score=45.27  Aligned_cols=63  Identities=19%  Similarity=0.111  Sum_probs=52.7

Q ss_pred             EEEEEcCCChhHHHHHHHHHhcCCceEEEEcC--CChhHHHHHHHHhCCCCcceEEEcCeeeccc
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINID--VYPSRKMELEKFAGSSAVPKVFFNEILMGGL  489 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~GI~YeeIDId--~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~  489 (893)
                      +++|+.+.-|.|.++...+..+|++|+.+.|+  .......++.++....+||++.-+|-.+-..
T Consensus         3 ~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS   67 (226)
T KOG0867|consen    3 LKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWES   67 (226)
T ss_pred             ceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeH
Confidence            67999999999999999999999999988654  3444556788888999999999887666554

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=84.74  E-value=2.9  Score=42.21  Aligned_cols=56  Identities=13%  Similarity=0.192  Sum_probs=37.4

Q ss_pred             cEEEEEcCCChhHHHHHHHHH----hcCCceEEEEcCCChh---------HHHHHHHHh---CCCCcceEEE
Q 002682          426 RVILYTRLGCQESREVRLFLY----WKRLRYVEINIDVYPS---------RKMELEKFA---GSSAVPKVFF  481 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~----e~GI~YeeIDId~d~e---------~r~EL~k~s---G~~TVPqIFI  481 (893)
                      .++.|..+|||+|++..-.|.    ++|+.+.-++++....         ....+....   |...+|+.|+
T Consensus        53 ~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~L  124 (153)
T TIGR02738        53 ALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFL  124 (153)
T ss_pred             EEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEE
Confidence            488999999999997776664    4677777777764320         011122333   5678898885

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>COG3019 Predicted metal-binding protein [General function prediction only]

Probab=84.74  E-value=2.5  Score=42.60  Aligned_cols=60  Identities=13%  Similarity=0.218  Sum_probs=49.0

Q ss_pred             cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCC----CCcceEEEcCeeeccc
Q 002682          426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGS----SAVPKVFFNEILMGGL  489 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~----~TVPqIFInGk~IGG~  489 (893)
                      ++++|-.|+|.=|+.=-+.|+.+|+++..+..+.-.    .+++..|.    .+.=+.+|||.+|=|-
T Consensus        27 ~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~----alK~~~gIp~e~~SCHT~VI~Gy~vEGH   90 (149)
T COG3019          27 EMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFL----ALKRRLGIPYEMQSCHTAVINGYYVEGH   90 (149)
T ss_pred             eEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHH----HHHHhcCCChhhccccEEEEcCEEEecc
Confidence            588999999999999999999999999888876533    35555553    5777999999999774

>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues

Probab=84.72  E-value=5.3  Score=37.59  Aligned_cols=68  Identities=21%  Similarity=0.343  Sum_probs=38.2

Q ss_pred             EEEEcC-CChhH------HHHHHHHHh--------cCCceEEEEcCCChhH---HHHHHHHh-CCCCcceEEEcCeeec-
Q 002682          428 ILYTRL-GCQES------REVRLFLYW--------KRLRYVEINIDVYPSR---KMELEKFA-GSSAVPKVFFNEILMG-  487 (893)
Q Consensus       428 vLYTks-gCP~C------krAK~lL~e--------~GI~YeeIDId~d~e~---r~EL~k~s-G~~TVPqIFInGk~IG-  487 (893)
                      +||+.. -|+.|      +...+||+.        ..+.|+.+||...++.   ++...++. --.-.|.|.+||+.|| 
T Consensus         1 ~VYGAe~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~E   80 (93)
T PF07315_consen    1 VVYGAEVICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAE   80 (93)
T ss_dssp             EEEE-SS--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEE
T ss_pred             CcccccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEec
Confidence            467765 48777      566777764        3456889999765432   23333333 3356799999999998 


Q ss_pred             ccHhHHHh
Q 002682          488 GLSELKAL  495 (893)
Q Consensus       488 G~DeL~el  495 (893)
                      |+-.|+..
T Consensus        81 Gnp~LK~I   88 (93)
T PF07315_consen   81 GNPQLKDI   88 (93)
T ss_dssp             SS--HHHH
T ss_pred             CCccHHHH
Confidence            55555443

A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.

>PTZ00102 disulphide isomerase; Provisional

Probab=84.05  E-value=2.2  Score=49.14  Aligned_cols=51  Identities=12%  Similarity=0.151  Sum_probs=35.9

Q ss_pred             EEEEEcCCChhHHHHHHHHH-------hc--CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 002682          427 VILYTRLGCQESREVRLFLY-------WK--RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF  481 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~-------e~--GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI  481 (893)
                      ++.|..+||++|++....+.       ..  .+.+-.+|.+.+..    +.+..|...+|++++
T Consensus        53 lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~----l~~~~~i~~~Pt~~~  112 (477)
T PTZ00102         53 LVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEME----LAQEFGVRGYPTIKF  112 (477)
T ss_pred             EEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHH----HHHhcCCCcccEEEE
Confidence            78899999999997765443       22  35667777765544    455668888998754

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=83.63  E-value=2.5  Score=47.94  Aligned_cols=55  Identities=13%  Similarity=0.140  Sum_probs=39.3

Q ss_pred             EEEEEcCCChhHHHHHHHHH-------hcC--CceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCee
Q 002682          427 VILYTRLGCQESREVRLFLY-------WKR--LRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEIL  485 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~-------e~G--I~YeeIDId~d~e~r~EL~k~sG~~TVPqIFI--nGk~  485 (893)
                      ++.|..+||++|++....+.       ..+  +.+..+|.+.++    ++.+..|...+|++++  +|+.
T Consensus        22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~----~l~~~~~i~~~Pt~~~~~~g~~   87 (462)
T TIGR01130        22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK----DLAQKYGVSGYPTLKIFRNGED   87 (462)
T ss_pred             EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH----HHHHhCCCccccEEEEEeCCcc
Confidence            77899999999998765443       344  677777777654    3555678889998854  4554

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]

Probab=83.60  E-value=1.3  Score=48.82  Aligned_cols=60  Identities=18%  Similarity=0.250  Sum_probs=47.5

Q ss_pred             cEEEEEcC---CC----hhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecccHhHH
Q 002682          426 RVILYTRL---GC----QESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELK  493 (893)
Q Consensus       426 kVvLYTks---gC----P~CkrAK~lL~e~GI~YeeIDId~d~e~r~EL~k~sG~~TVPqIFInGk~IGG~DeL~  493 (893)
                      -|-+|.-+   +|    |||-++.-+|+..+|||+.++-.        +..++...++|-|-.||++|.+.+-+.
T Consensus        45 ~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~--------~~~rSr~G~lPFIELNGe~iaDS~~I~  111 (281)
T KOG4244|consen   45 TVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCS--------LKRRSRNGTLPFIELNGEHIADSDLIE  111 (281)
T ss_pred             eEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceecccc--------ceeeccCCCcceEEeCCeeccccHHHH
Confidence            46666643   44    79999999999999999998764        234566789999999999999877543

>PLN02309 5'-adenylylsulfate reductase

Probab=83.55  E-value=2  Score=50.59  Aligned_cols=53  Identities=6%  Similarity=0.027  Sum_probs=37.2

Q ss_pred             cEEEEEcCCChhHHHHHHHHHhc-------CCceEEEEcC-CChhHHHHHHHHhCCCCcceEEE
Q 002682          426 RVILYTRLGCQESREVRLFLYWK-------RLRYVEINID-VYPSRKMELEKFAGSSAVPKVFF  481 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e~-------GI~YeeIDId-~d~e~r~EL~k~sG~~TVPqIFI  481 (893)
                      -|+.|..+||++|+.++..|.+.       ++.+-.+|++ .+..   ...+..+...+|+|++
T Consensus       368 vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~---la~~~~~I~~~PTil~  428 (457)
T PLN02309        368 WLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKE---FAKQELQLGSFPTILL  428 (457)
T ss_pred             EEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchH---HHHhhCCCceeeEEEE
Confidence            48899999999999888777543       4666677776 3222   1223467889999876

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=82.44  E-value=4.9  Score=35.39  Aligned_cols=35  Identities=17%  Similarity=0.102  Sum_probs=24.8

Q ss_pred             cEEEEEcCCChhHHHHHHHHHh-------cCCceEEEEcCCC
Q 002682          426 RVILYTRLGCQESREVRLFLYW-------KRLRYVEINIDVY  460 (893)
Q Consensus       426 kVvLYTksgCP~CkrAK~lL~e-------~GI~YeeIDId~d  460 (893)
                      -+++|..+||+.|.+....|.+       .++.+..++++..
T Consensus        22 ~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~   63 (116)
T cd02966          22 VLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDD   63 (116)
T ss_pred             EEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCC
Confidence            3778888999999866555533       2566777777764

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=81.07  E-value=6.8  Score=36.86  Aligned_cols=34  Identities=21%  Similarity=0.104  Sum_probs=23.8

Q ss_pred             EEEEEcCCChhHHHHHHHHHhc----CCceEEEEcCCC
Q 002682          427 VILYTRLGCQESREVRLFLYWK----RLRYVEINIDVY  460 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e~----GI~YeeIDId~d  460 (893)
                      |+.|..+|||.|......|.+.    ++.+..++++..
T Consensus        29 vv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~   66 (127)
T cd03010          29 LLNVWASWCAPCREEHPVLMALARQGRVPIYGINYKDN   66 (127)
T ss_pred             EEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEECCCC
Confidence            7778899999999877666543    455556665433

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=80.90  E-value=4.4  Score=41.82  Aligned_cols=55  Identities=16%  Similarity=0.228  Sum_probs=35.8

Q ss_pred             EEEEEcCCChhHHHHHHHHHh------c---CCceEEEEcCCCh------------hHHHHHHHHhCCCCcceEEE
Q 002682          427 VILYTRLGCQESREVRLFLYW------K---RLRYVEINIDVYP------------SRKMELEKFAGSSAVPKVFF  481 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~e------~---GI~YeeIDId~d~------------e~r~EL~k~sG~~TVPqIFI  481 (893)
                      +.||..++|+||.+.|+-+..      .   .+.+.++++....            .-..+|.+..+.++.|++++
T Consensus        46 llmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfvF  121 (182)
T COG2143          46 LLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFVF  121 (182)
T ss_pred             EEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEEE
Confidence            889999999999877755432      1   1334445543211            11347778888888898776

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=80.51  E-value=4.9  Score=39.60  Aligned_cols=60  Identities=12%  Similarity=0.228  Sum_probs=36.5

Q ss_pred             EEEEEcCCChhHHHHHHHHH-------hcCCceEEEEcCCChhH------------------HHHHHHHhCCCCcceEE-
Q 002682          427 VILYTRLGCQESREVRLFLY-------WKRLRYVEINIDVYPSR------------------KMELEKFAGSSAVPKVF-  480 (893)
Q Consensus       427 VvLYTksgCP~CkrAK~lL~-------e~GI~YeeIDId~d~e~------------------r~EL~k~sG~~TVPqIF-  480 (893)
                      ++.|..+|||+|+.....|.       ..++.+..++.+..++.                  ..++.+..|...+|.+| 
T Consensus        65 ~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~l  144 (173)
T PRK03147         65 FLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPLPTTFL  144 (173)
T ss_pred             EEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCcCeEEE
Confidence            67788999999987544442       23466666666544322                  12444556777788655 


Q ss_pred             Ec--Ceee
Q 002682          481 FN--EILM  486 (893)
Q Consensus       481 In--Gk~I  486 (893)
                      |+  |+.+
T Consensus       145 id~~g~i~  152 (173)
T PRK03147        145 IDKDGKVV  152 (173)
T ss_pred             ECCCCcEE
Confidence            43  6554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	893
2khp_A	92	Solution Structure Of Glutaredoxin From Brucella Me		3e-07
3grx_A	82	Nmr Structure Of Escherichia Coli Glutaredoxin 3-Gl		3e-05
1fov_A	82	Glutaredoxin 3 From Escherichia Coli In The Fully O		1e-04
2klx_A	89	Solution Structure Of Glutaredoxin From Bartonella		1e-04

>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella Melitensis Length = 92

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILM 486
           VI+YTR GC      +  L  K   + EI+    P  + E+++ +G +  P++F   + +
Sbjct: 8   VIIYTRPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIFIGSVHV 67
Query: 487 GGLSELKALDESGKLD 502
           GG  +L AL++ GKLD
Sbjct: 68  GGCDDLYALEDEGKLD 83

>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin 3-Glutathione Mixed Disulfide Complex, 20 Structures Length = 82

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILM 486
           V +YT+  C  S   +  L  K + + E+ ID   +++ E+ K +G + VP++F +   +
Sbjct: 3   VEIYTKETCPYSHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHI 62
Query: 487 GGLSELKALDESGKLD 502
           GG  +L ALD  G LD
Sbjct: 63  GGYDDLYALDARGGLD 78

>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized Form Length = 82

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILM 486
           V +YT+  C      +  L  K + + E+ ID   +++ E+ K +G + VP++F +   +
Sbjct: 3   VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHI 62
Query: 487 GGLSELKALDESGKLD 502
           GG  +L ALD  G LD
Sbjct: 63  GGYDDLYALDARGGLD 78

>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella Henselae Str. Houston Length = 89

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 420 PLVMKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKV 479
           P  MK  +ILYTR  C   +  R  L  K ++Y +I+      ++M +++  G +  P++
Sbjct: 2   PGSMK-EIILYTRPNCPYCKRARDLLDKKGVKYTDIDASTSLRQEM-VQRANGRNTFPQI 59
Query: 480 FFNEILMGGLSELKALDESGKLDEKIE 506
           F  +  +GG  +L AL+  GKLD  ++
Sbjct: 60  FIGDYHVGGCDDLYALENKGKLDSLLQ 86

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	893
2ysr_A	105	DEP domain-containing protein 1; structural genomi	2e-20
1fsh_A	105	Dishevelled-1; three-helix bundle, beta-ARM, signa	2e-20
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	1e-13
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	4e-13
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	4e-13
1uhw_A	109	Pleckstrin; three-helix bundle, beta-ARM, riken st	8e-13
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	7e-11
1v3f_A	120	Pleckstrin 2; three-helix bundle, structural genom	9e-11
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	1e-10
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	3e-10
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	6e-10
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	1e-09
1kte_A	105	Thioltransferase; redox-active center, electron tr	1e-09
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	2e-09
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	1e-08
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	4e-08
2cso_A	127	Pleckstrin; DEP domain, platelet P47 protein, stru	4e-08
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	5e-08
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	8e-08
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	2e-07
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	3e-07
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	1e-05
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	2e-05
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	5e-05
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	5e-05
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	6e-05
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	6e-05
2byv_E	999	RAP guanine nucleotide exchange factor 4; EPAC2, C	9e-05
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	1e-04
3ml6_A	385	Chimeric complex between protein dishevlled2 HOMO	1e-04
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	5e-04

>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105

 Score = 86.0 bits (213), Expect = 2e-20
 Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 11/87 (12%)

Query: 540 IVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSEDQYLE--------REEAVEFGRKL 591
           +    +  + ++      +++ NCF   EAV++L +             R++ ++  RK 
Sbjct: 17  VTTSFRAGMPLRKHRQHFKKYGNCFTAGEAVDWLYDLLRNNSNFGPEVTRQQTIQLLRKF 76

Query: 592 ASKLFFRHV---LDENLFEDGNHLYRF 615
                   +         +D N L+RF
Sbjct: 77  LKNHVIEDIKGRWGSENVDDNNQLFRF 103

>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 Length = 105

 Score = 86.1 bits (213), Expect = 2e-20
 Identities = 22/106 (20%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 517 APLPPLSGEDDLSSSGAIDELALIVLKMKE---NVVVKDRFYKMRRFTNCFLGSEAVNFL 573
           + +P     ++   +   D ++ IV  M+     + ++DR +      N  +G++ V++L
Sbjct: 2   SSVPGAPQLEEAPLTVKSD-MSAIVRVMQLPDSGLEIRDRMWLKITIANAVIGADVVDWL 60

Query: 574 SE--DQYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYRFLD 617
               + + ER EA ++   +    F RH +++  F +    Y F D
Sbjct: 61  YTHVEGFKERREARKYASSMLKHGFLRHTVNKITFSEQ-CYYVFGD 105

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis} Length = 92

 Score = 66.4 bits (163), Expect = 1e-13
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 423 MKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFN 482
           M   VI+YTR GC      +  L  K   + EI+    P  + E+++ +G +  P++F  
Sbjct: 5   MV-DVIIYTRPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIFIG 63

Query: 483 EILMGGLSELKALDESGKLDE 503
            + +GG  +L AL++ GKLD 
Sbjct: 64  SVHVGGCDDLYALEDEGKLDS 84

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* Length = 82

 Score = 64.5 bits (158), Expect = 4e-13
 Identities = 24/80 (30%), Positives = 43/80 (53%)

Query: 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILM 486
           V +YT+  C      +  L  K + + E+ ID   +++ E+ K +G + VP++F +   +
Sbjct: 3   VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHI 62

Query: 487 GGLSELKALDESGKLDEKIE 506
           GG  +L ALD  G LD  ++
Sbjct: 63  GGYDDLYALDARGGLDPLLK 82

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} Length = 99

 Score = 65.4 bits (160), Expect = 4e-13
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 419 QPLVMKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKME-LEKFAGSSAVP 477
               +  ++ +YT   C         L  K + + E  ID     +     +  G  ++P
Sbjct: 10  HGSAVSAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLP 69

Query: 478 KVFFNEILMGGLSELKALDESGKLDEKIE 506
           ++F ++  +GG  ++ ALD +GKLD  + 
Sbjct: 70  QIFIDDQHIGGCDDIYALDGAGKLDPLLH 98

>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A Length = 109

 Score = 64.6 bits (157), Expect = 8e-13
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 12/104 (11%)

Query: 529 SSSGAIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFL-SEDQYLEREEAVEF 587
           S S  +  L L +   ++ +   +     + F +C  GS  +++L S      R+E +  
Sbjct: 3   SGSSGLGALYLSMKDPEKGIKELNLEKDKKVFNHCLTGSGVIDWLVSNKLVRNRQEGLMI 62

Query: 588 GRKLASKLFFRHVLD----------ENLFEDGNH-LYRFLDHDP 620
              L S+ + +   D          EN F D     Y F D  P
Sbjct: 63  SASLLSEGYLQPAGDLSKNAADGIAENPFLDSPDAFYYFPDSGP 106

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae} Length = 89

 Score = 58.3 bits (142), Expect = 7e-11
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 423 MKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFN 482
           MK  +ILYTR  C   +  R  L  K ++Y +I+      ++M +++  G +  P++F  
Sbjct: 5   MK-EIILYTRPNCPYCKRARDLLDKKGVKYTDIDASTSLRQEM-VQRANGRNTFPQIFIG 62

Query: 483 EILMGGLSELKALDESGKLDEKIE 506
           +  +GG  +L AL+  GKLD  ++
Sbjct: 63  DYHVGGCDDLYALENKGKLDSLLQ 86

>1v3f_A Pleckstrin 2; three-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: a.4.5.31 Length = 120

 Score = 59.0 bits (142), Expect = 9e-11
 Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 3/94 (3%)

Query: 529 SSSGAIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSEDQYLE-REEAVEF 587
           S S  +  +   +      +       +   +   FLGS  V++L    +   R EAV  
Sbjct: 3   SGSSGLHRIVDKMHDTSTGIRPSPNMEQGSTYKKTFLGSSLVDWLISSNFAASRLEAVTL 62

Query: 588 GRKLASKLFFRHVLDE--NLFEDGNHLYRFLDHD 619
              L  + F R V          G+   +FLD  
Sbjct: 63  ASMLMEENFLRPVGVRSMGAIRSGDLAEQFLDDS 96

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 130

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 7/112 (6%)

Query: 398 SSDVDSENRTEQRQEVVKEPPQPLVMKGRVILYTRLGCQESREVRLFLYWKRLRYVEINI 457
            S    EN        ++E     +    V+++++  C      +   +   + Y  + +
Sbjct: 4   GSSGSLENLATAPVNQIQE----TISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVEL 59

Query: 458 DVYP---SRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDEKIE 506
           D+       +  L K  G   VP++F N   +GG ++   L + GKL   + 
Sbjct: 60  DLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVH 111

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* Length = 146

 Score = 58.6 bits (142), Expect = 3e-10
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 398 SSDVDSENRTEQRQEVVKEPPQPLVMKGRVILYTRLGCQESREVRLFLYWKRLRYVEINI 457
           ++    EN        ++E     +    V+++++  C      +   +   + Y  + +
Sbjct: 26  NTSSSLENLATAPVNQIQE----TISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVEL 81

Query: 458 DVYP---SRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDEKIE 506
           D+       +  L K  G   VP++F N   +GG ++   L + GKL   + 
Sbjct: 82  DLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVH 133

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A Length = 116

 Score = 56.5 bits (137), Expect = 6e-10
 Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 3/103 (2%)

Query: 407 TEQRQEVVKEPPQPLVMKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP---SR 463
           ++Q  +   +  + L     V+++++  C     V+  L      Y  + +D        
Sbjct: 2   SKQELDAALKKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQL 61

Query: 464 KMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDEKIE 506
           +  L  + G   VP VF     +GG   +    +  +L   ++
Sbjct: 62  QSALAHWTGRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQ 104

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} Length = 114

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 18/99 (18%), Positives = 43/99 (43%), Gaps = 3/99 (3%)

Query: 411 QEVVKEPPQPLVMKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVY---PSRKMEL 467
           +E ++     L+ + RV+++++  C  S  V+       +    + +D        +  L
Sbjct: 3   REELRRHLVGLIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVL 62

Query: 468 EKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDEKIE 506
            +      VP +F N++ +GG  +     +SG L + ++
Sbjct: 63  SEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQ 101

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* Length = 105

 Score = 55.3 bits (134), Expect = 1e-09
 Identities = 19/94 (20%), Positives = 46/94 (48%), Gaps = 6/94 (6%)

Query: 419 QPLVMKGRVILYTRLGCQESREV-RLF----LYWKRLRYVEINIDVYPSRKME-LEKFAG 472
              +  G+V+++ +  C   R+   L          L +V+I      +   + L++  G
Sbjct: 6   NSKIQPGKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTG 65

Query: 473 SSAVPKVFFNEILMGGLSELKALDESGKLDEKIE 506
           +  VP+VF  +  +GG ++L+++ + G+L  +++
Sbjct: 66  ARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQ 99

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A* Length = 113

 Score = 55.3 bits (134), Expect = 2e-09
 Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 4/97 (4%)

Query: 414 VKEPPQPLVMKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVY----PSRKMELEK 469
           ++E  +  V +  V++Y++  C    EV+       ++ + + +D      P  +  LE+
Sbjct: 8   MEESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLER 67

Query: 470 FAGSSAVPKVFFNEILMGGLSELKALDESGKLDEKIE 506
             G   VP VF     +GG ++   L+  G L+  + 
Sbjct: 68  LTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELMLA 104

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B Length = 114

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 411 QEVVKEPPQPLVMKGRVILYTRLGCQESREV-RLF--LYWKRLRYVEINIDVY---PSRK 464
            ++ +E  Q  +   +V ++ +  C   R    +     +KR  Y  ++I  +      +
Sbjct: 5   HQMAEEFVQQRLANNKVTIFVKYTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELR 64

Query: 465 MELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDEKIE 506
              E+  G   VP++FF +  +GG S+L  +D    L + + 
Sbjct: 65  DYFEQITGGKTVPRIFFGKTSIGGYSDLLEIDNMDALGDILS 106

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 4e-09
 Identities = 98/710 (13%), Positives = 192/710 (27%), Gaps = 209/710 (29%)

Query: 192 EMGMMDES-KDLES-------KAVECIDLSKMSKDFKSKATECVDLGHIDESRDIESKGA 243
           E G      KD+ S          +C D+  M K   SK     ++ HI  S+D  S G 
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKE----EIDHIIMSKDAVS-GT 64

Query: 244 GEKLDCKNERGESRDADRVIVAGVLDSTAQVERD--QETIGEEEREPEPVFDGTEVPGME 301
                    + E       +V   ++   ++        I  E+R+P           M 
Sbjct: 65  LRLFWTLLSKQEE------MVQKFVEEVLRINYKFLMSPIKTEQRQPS----------MM 108

Query: 302 ANRSTSTRS-LELDLE--AEGSVW-PEKAAALKNFVKEKGSGAVANVMRRLSGKKDETGQ 357
                  R  L  D +  A+ +V   +    L+  + E       NV+  + G     G 
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK--NVL--IDGVL---G- 160

Query: 358 DVSIDEDNVASDSGKDSEAVEASK------RMAERYSWNPLNYIKMSSDVDSENRTEQRQ 411
                       SGK   A++         +M  +  W     + + +    E   E  Q
Sbjct: 161 ------------SGKTWVALDVCLSYKVQCKMDFKIFW-----LNLKNCNSPETVLEMLQ 203

Query: 412 EVVKEPPQPLVMKGRVILYTRLGCQESREVRLFLYWKRLRYVE---INIDVYPSRKMELE 468
           +++ +       +       +L     +   L    K   Y     + ++V  ++     
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQA-ELRRLLKSKPYENCLLVLLNVQNAK--AWN 260

Query: 469 KFAGSSAVPKVFFNEILMGGLSELKALDESGKLDEKIEYLITEAPPFEAPLPPLSGEDDL 528
            F  S                              KI  L+T                  
Sbjct: 261 AFNLSC-----------------------------KI--LLTT----------------- 272

Query: 529 SSSGAIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSEDQYLE------RE 582
                 D   L         +           T      E  + L   +YL+        
Sbjct: 273 RFKQVTD--FLSAATTTHISLDHHS----MTLTP----DEVKSLLL--KYLDCRPQDLPR 320

Query: 583 EAVEFGRKLASKLFFRHVLDENLFEDGNHL--YRFLDHDPLVSSQCHNIPRGIIDAKPKP 640
           E +         +       E++ +       ++ ++ D L +         II++    
Sbjct: 321 EVLT-TNPRRLSII-----AESIRDGLATWDNWKHVNCDKLTT---------IIESSLNV 365

Query: 641 ISEIALRLRFLSYAIFEAYLSEDGRHVDYRTI-----HGSEEFARYLRTVQELQRVELQD 695
           +     R  F   ++F         H+    +        +     +  V +L +  L +
Sbjct: 366 LEPAEYRKMFDRLSVF-----PPSAHIPTILLSLIWFDVIKSDVMVV--VNKLHKYSLVE 418

Query: 696 MPREEMLAFFINLY--------NMMAIHAILV---------CGHPIGALERRKFFGDFKY 738
              +E      ++Y        N  A+H  +V             +      ++F  + +
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF--YSH 476

Query: 739 VIGGYTYSLSAIQNGILRGNQRPPY-NLMKPF-GAKDKRSQVALPYPEPSTHFALVCGTR 796
            IG   + L  I++       R  + +    F   K +    A        +        
Sbjct: 477 -IG---HHLKNIEHPERMTLFRMVFLDFR--FLEQKIRHDSTAWNASGSILNTLQQ---- 526

Query: 797 SSPALRCYSP-----GNIDKELMKAARSFLRGGG--LVIDLHAKVATMSM 839
               L+ Y P         + L+ A   FL      L+   +  +  +++
Sbjct: 527 ----LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 2e-04
 Identities = 52/336 (15%), Positives = 104/336 (30%), Gaps = 75/336 (22%)

Query: 573 LSEDQYLEREEAVEFGRKLASKLFFRHVLDE--NLF--EDGNHLYRFLDHDPLVSSQCHN 628
             E QY  ++    F          + V D   ++   E+ +H+           S    
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM----SKDAVSGTLR 66

Query: 629 IPRGIIDAKPKPISEIALR--LR----FLSYAIFEAYLSEDGRHVDY-----RTIHGSEE 677
           +    + +K + + +  +   LR    FL   I             Y     R  + ++ 
Sbjct: 67  L-FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 678 FARY----LRTVQELQRV--ELQDMPREEMLAFFINLYNMM----AIHAILVCGHPIGAL 727
           FA+Y    L+   +L++   EL+           + +  ++       A+ VC      +
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAK-------NVLIDGVLGSGKTWVALDVCLSY--KV 176

Query: 728 ERRKFFGDFKYVIGGYTYSLSAIQNGILRGNQRPPYNLMKPFGAKDKRSQVALPYPEPST 787
           + +  F  F ++      S       +L   Q+  Y +   + ++   S   +     S 
Sbjct: 177 QCKMDFKIF-WLNLKNCNS----PETVLEMLQKLLYQIDPNWTSRSDHSS-NIKLRIHSI 230

Query: 788 HFALVCGTRSSPALRCYSPGNI------DKELMKAARSFLRGGGLVIDLHAKVATMSMVL 841
              L    +S P   C     +      + +   A   F        +L  K+    ++ 
Sbjct: 231 QAELRRLLKSKPYENCL----LVLLNVQNAKAWNA---F--------NLSCKI----LLT 271

Query: 842 KWYS--VDFGKNEVE---VLKHASNYLEPTASEALL 872
             +    DF          L H S  L P   ++LL
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 3e-04
 Identities = 58/426 (13%), Positives = 126/426 (29%), Gaps = 97/426 (22%)

Query: 495 LD-ESGKLDEKIEYLITEAPPFEAPLPPLSGEDDLSSSGAIDELALIVLK--MKENVVVK 551
           +D E+G+   + + ++     FE         D+       D    I+ K  +   ++ K
Sbjct: 7   MDFETGEHQYQYKDIL---SVFEDAF-----VDNFDCKDVQDMPKSILSKEEIDHIIMSK 58

Query: 552 DRFYKMRRFTNCFL--GSEAVNFLSEDQYLEREEAVEFGRKLASKLFFRHV---LDENLF 606
           D      R     L    E V      +++E    + +   L S +        +   ++
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMV-----QKFVEEVLRINYKF-LMSPIKTEQRQPSMMTRMY 112

Query: 607 EDG-NHLYRFLDHDPLVSSQCHNIPRGIIDAKPKPISEIALRLRFLSYAIFEAYLSEDGR 665
            +  + LY   D+        +N+ R       +P  ++   L  L             R
Sbjct: 113 IEQRDRLYN--DNQVFAK---YNVSR------LQPYLKLRQALLEL-------------R 148

Query: 666 HVDYRTIHGSEEFARYLRTVQELQRVELQD-MPREEMLAFFINLYNMMAIHAILVCGHPI 724
                 I G     +    +      ++Q  M  +    F++NL N  +   +L      
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK---IFWLNLKNCNSPETVLE----- 200

Query: 725 GALERRKFFGDFKYVIGG-----YTYSLSAIQNGILRGNQRPPY-------------NLM 766
             L++  +  D  +             + +IQ  + R  +  PY                
Sbjct: 201 -MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259

Query: 767 KPFGAKDKRSQVALPYPEPSTHFALVCGTRSSPALRCYSPGNIDKELMKAARSFL----- 821
             F   +   ++ L          L   T +  +L  +S      E+      +L     
Sbjct: 260 NAF---NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316

Query: 822 -------RGGGLVIDLHAKVATM--SMVLKW-YSVDFGKNEV-EVLKHASNYLEPTASEA 870
                        + +   +A      +  W        +++  +++ + N LEP     
Sbjct: 317 DLPREVLTTNPRRLSI---IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373

Query: 871 LLEALA 876
           + + L+
Sbjct: 374 MFDRLS 379

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A Length = 93

 Score = 52.1 bits (125), Expect = 1e-08
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 9/89 (10%)

Query: 423 MKGRVILYTRLGC------QESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAV 476
           M G + +Y+           +  EV   L  KR++Y  ++I    + + E+   AG+   
Sbjct: 1   MSG-LRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKA 59

Query: 477 --PKVFFNEILMGGLSELKALDESGKLDE 503
             P++       G         E   L E
Sbjct: 60  TPPQIVNGNHYCGDYELFVEAVEQDTLQE 88

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae} Length = 127

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 20/99 (20%), Positives = 43/99 (43%), Gaps = 6/99 (6%)

Query: 414 VKEPPQPLVMKGRVILYTRLGCQESREVRLFLYWKRLRYVE---INIDVYP---SRKMEL 467
           V++    ++    +I++++  C  S+ ++  L  +         I +D +      +  +
Sbjct: 3   VQKEYSLILDLSPIIIFSKSTCSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYI 62

Query: 468 EKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDEKIE 506
           +   G   VP +  N +  GG  E+K L   GKL E ++
Sbjct: 63  KLVTGRGTVPNLLVNGVSRGGNEEIKKLHTQGKLLESLQ 101

>2cso_A Pleckstrin; DEP domain, platelet P47 protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.31 Length = 127

 Score = 51.7 bits (123), Expect = 4e-08
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 15/97 (15%)

Query: 536 ELALIVLKMKEN---VVVKDRFYKMRRFTNCFLGSEAVNFL-SEDQYLEREEAVEFGRKL 591
           +L  + L MK+    +   +     + F +CF G+  +++L S      R+E +     L
Sbjct: 17  DLGALYLSMKDTEKGIKELNLEKDKKIFNHCFTGNCVIDWLVSNQSVRNRQEGLMIASSL 76

Query: 592 ASKLFFRHVLD----------ENLFEDGNH-LYRFLD 617
            ++ + +   D          EN F D     Y F D
Sbjct: 77  LNEGYLQPAGDMSKSAVDGTAENPFLDNPDAFYYFPD 113

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A* Length = 118

 Score = 51.2 bits (123), Expect = 5e-08
 Identities = 22/117 (18%), Positives = 50/117 (42%), Gaps = 11/117 (9%)

Query: 397 MSSDVDSENRTEQRQEVVKEPPQPLVMKGRVILYTRLGCQESREVRLFLYWK------RL 450
           M         +++  + VK+    L+ +  + + ++  C         L+ K      ++
Sbjct: 1   MGHHHHHHMVSQETIKHVKD----LIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKV 56

Query: 451 RYVEINIDVY-PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDEKIE 506
             +++N        +  L +  G   VP ++ N   +GG  +L+ L E+G+L+E +E
Sbjct: 57  LVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGGNDDLQELRETGELEELLE 113

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A* Length = 129

 Score = 50.8 bits (122), Expect = 8e-08
 Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 11/112 (9%)

Query: 402 DSENRTEQRQEVVKEPPQPLVMKGRVILYTRLGCQESREVRLFLYWKR------LRYVEI 455
            S   +++    VK+    L+ +  V +  +  C   +     L+ +          +E+
Sbjct: 18  GSHMVSQETVAHVKD----LIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLEL 73

Query: 456 NIDVYPS-RKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDEKIE 506
           +     S  +  LE+ +G   VP V+ N   +GG S+L+ L ++GKL E ++
Sbjct: 74  DEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEILK 125

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria} Length = 362

 Score = 53.6 bits (128), Expect = 2e-07
 Identities = 26/146 (17%), Positives = 55/146 (37%), Gaps = 12/146 (8%)

Query: 368 SDSGKDSEAVEASKRMAERYSWNPLNYIKMSSDVDSENRTEQRQEVVKEPPQPLVMKGRV 427
            +  +D   +      A         Y   S         E  + V     + L+ +  +
Sbjct: 209 PNEKRDHMVLLEFVTAAGITHGMHELYKSGSGSGSGMVSQETIKHV-----KDLIAENEI 263

Query: 428 ILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPS-RKMELEKFAGSSAVPKVF 480
            + ++  C  S      L+ K      ++  +++N     +  +  L +  G   VP ++
Sbjct: 264 FVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIY 323

Query: 481 FNEILMGGLSELKALDESGKLDEKIE 506
            N   +GG  +L+ L E+G+L+E +E
Sbjct: 324 INGKHIGGNDDLQELRETGELEELLE 349

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A Length = 85

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 423 MKGRVILYTRLGCQE-SREVRLF----LYWKRLRYVEINIDVYPSRKMELEKFAGSSA-- 475
           M+   +++ R GC    R   L           +Y  ++I      K +L++ AG     
Sbjct: 1   MQ--TVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVET 58

Query: 476 VPKVFFNEILMGGLSELKALDESGKLD 502
           VP++F ++  +GG ++  A  +   LD
Sbjct: 59  VPQIFVDQQHIGGYTDFAAWVK-ENLD 84

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A* Length = 89

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 12/90 (13%)

Query: 423 MKGRVILYTRLGCQE-SREVRLFLYWKRLRYVEINIDVYPSR--KMELEKFAGSSA---- 475
           MK  V +YTR GC       +       + + E  ID Y  R    +    +G       
Sbjct: 4   MK--VKIYTRNGCPYCVWAKQW-FEENNIAFDETIIDDYAQRSKFYDEMNQSGKVIFPIS 60

Query: 476 -VPKVFFNEILMGGLSELKALDESGKLDEK 504
            VP++F ++  +GG +ELKA  +   L++K
Sbjct: 61  TVPQIFIDDEHIGGFTELKANAD-KILNKK 89

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 Length = 81

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 5/80 (6%)

Query: 423 MKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFN 482
           M+  + +YTR  C +    +  +  +   +  IN+D  P     L    G   +P V   
Sbjct: 1   MR--ITIYTRNDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRAQ-GFRQLPVVIAG 57

Query: 483 EILMGGLS--ELKALDESGK 500
           ++   G     +  L  +  
Sbjct: 58  DLSWSGFRPDMINRLHPAPH 77

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus} Length = 92

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 7/80 (8%)

Query: 423 MKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPS---RKM--ELEKFAGSSAVP 477
           M   V++Y    C   +    FL  + + +  I ID       +K+  ++   +GS +VP
Sbjct: 11  MA-EVLMYGLSTCPHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVP 69

Query: 478 KVFFNEILMGGLSELKALDE 497
            V   +  + G +E K L E
Sbjct: 70  VVVKGDKHVLGYNEEK-LKE 88

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 Length = 75

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 3/75 (4%)

Query: 426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEIL 485
            + LYT+  C +    +  L    L Y  ++I +    +  +    G    P V  +   
Sbjct: 2   SITLYTKPACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMAL-GYVQAPVVEVDGEH 60

Query: 486 MGG--LSELKALDES 498
             G     +K L  +
Sbjct: 61  WSGFRPERIKQLQAA 75

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469

 Score = 45.7 bits (107), Expect = 6e-05
 Identities = 25/157 (15%), Positives = 59/157 (37%), Gaps = 4/157 (2%)

Query: 542 LKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSEDQYLE--REEAVEFGRKLASKLFFRH 599
           +  +   +++DR Y ++ +  C +G+E V+++ +       R +AV   + L       H
Sbjct: 202 ILSRAPHMIRDRKYHLKTYRQCCVGTELVDWMIQQTSCVHSRTQAVGMWQVLLEDGVLNH 261

Query: 600 VLDENLFEDGNHLYRFLDHDPLVSSQCHNIPRGIIDAKPKPISEIALRLRFLSYAIFEAY 659
           V  E  F+D    YRFLD +   +       +   D + +    +    +    A     
Sbjct: 262 VDQERHFQDKYLFYRFLDDEREDAPLPTEEEKKECDEELQDTMLL--LSQMGPDAHMRMI 319

Query: 660 LSEDGRHVDYRTIHGSEEFARYLRTVQELQRVELQDM 696
           L +         +    +   +++ +  L     +++
Sbjct: 320 LRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKREL 356

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 111

 Score = 42.2 bits (99), Expect = 6e-05
 Identities = 12/91 (13%), Positives = 33/91 (36%), Gaps = 14/91 (15%)

Query: 427 VILYTRLGC------QESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA--------G 472
           + ++           ++ ++V  FL   ++ + E++I +   ++  + K          G
Sbjct: 10  IRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNVPPEKKPTQG 69

Query: 473 SSAVPKVFFNEILMGGLSELKALDESGKLDE 503
           +   P++F  +   G         ES  +  
Sbjct: 70  NPLPPQIFNGDRYCGDYDSFFESKESNTVFS 100

>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP, cyclic nucleotide, regulation, auto-inhibition, CDC25 homology domain; 2.7A {Mus musculus} Length = 999

 Score = 45.2 bits (106), Expect = 9e-05
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 541 VLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFL--SEDQYLEREEAVEFGRKLASKLFFR 598
            +  +   +++DR Y ++ +  C +G+E V+++         R +AV   + L       
Sbjct: 201 AILSRAPHMIRDRKYHLKTYRQCCVGTELVDWMIQQTSCVHSRTQAVGMWQVLLEDGVLN 260

Query: 599 HVLDENLFEDGNHLYRFLDHDP 620
           HV  E  F+D    YRFLD + 
Sbjct: 261 HVDQERHFQDKYLFYRFLDDER 282

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A Length = 121

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 10/91 (10%), Positives = 29/91 (31%), Gaps = 14/91 (15%)

Query: 427 VILYTRLGC------QESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSA----- 475
           + +Y           ++ ++V  FL   ++ + E +I      +  + +    ++     
Sbjct: 2   IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATG 61

Query: 476 ---VPKVFFNEILMGGLSELKALDESGKLDE 503
               P++F      G         E+  +  
Sbjct: 62  YPLPPQIFNESQYRGDYDAFFEARENNAVYA 92

>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Length = 385

 Score = 44.2 bits (103), Expect = 1e-04
 Identities = 28/152 (18%), Positives = 45/152 (29%), Gaps = 8/152 (5%)

Query: 536 ELALIVLKMKE---NVVVKDRFYKMRRFTNCFLGSEAVNFLSE--DQYLEREEAVEFGRK 590
           ++A +   M      + V+DR +      N FLGS+ V++L    + + ER EA ++   
Sbjct: 8   DMASVTKAMAAPESGLEVRDRMWLKITIPNAFLGSDVVDWLYHHVEGFPERREARKYASG 67

Query: 591 LASKLFFRHVLDENLFEDGNHLYRFLDHDPLVSSQCHNIPRGIIDAKPKPISEIALRLRF 650
           L      RH    N        Y                P    + +          L  
Sbjct: 68  LLKAGLIRH--TVNKITFSEQCYYVFGDLSGGPRPYSPQPPPYHELEFGGSGGSRNELFL 125

Query: 651 LSYAIFEAYLSEDGRHVDYRTIHGSEEFARYL 682
                    +S     V    + G      YL
Sbjct: 126 DVLESVNLLMSPQ-GQVLSAHVSGRVVMKSYL 156

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei} Length = 103

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 424 KGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRK-----MELEKFAGSSAVPK 478
           +G+VI+Y    C   ++ +  L    + +  + +D    ++      E+ +F  S + P 
Sbjct: 21  RGKVIMYGLSTCVWCKKTKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPT 80

Query: 479 VFFN-EILMGGLSELK 493
              N E  + G  E +
Sbjct: 81  TIINDEKAIVGFKEKE 96

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	893
d1o7fa1	142	a.4.5.31 (A:180-321) Regulatory domain of epac2, d	4e-19
d1fsha_	94	a.4.5.31 (A:) Segment polarity protein Dishevelled	4e-16
d1v3fa_	120	a.4.5.31 (A:) Pleckstrin 2 {Mouse (Mus musculus) [	2e-13
d1fova_	82	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	2e-12
d2csoa1	115	a.4.5.31 (A:8-122) Pleckstrin {Human (Homo sapiens	5e-12
d1ktea_	105	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	1e-08
d1wika_	109	c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (M	2e-08
d1nm3a1	74	c.47.1.1 (A:166-239) C-terminal, Grx domain of Hyb	1e-07
d1h75a_	76	c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Esch	5e-07
d1t1va_	93	c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [Tax	4e-06
d1egoa_	85	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	8e-06
d1r7ha_	74	c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Cory	3e-05

>d1o7fa1 a.4.5.31 (A:180-321) Regulatory domain of epac2, domain 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 142

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Regulatory domain of epac2, domain 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.6 bits (204), Expect = 4e-19
 Identities = 21/108 (19%), Positives = 44/108 (40%), Gaps = 3/108 (2%)

Query: 541 VLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSE--DQYLEREEAVEFGRKLASKLFFR 598
            +  +   +++DR Y ++ +  C +G+E V+++ +       R +AV   + L       
Sbjct: 16  AILSRAPHMIRDRKYHLKTYRQCCVGTELVDWMIQQTSCVHSRTQAVGMWQVLLEDGVLN 75

Query: 599 HVLDENLFEDGNHLYRFLDHDP-LVSSQCHNIPRGIIDAKPKPISEIA 645
           HV  E  F+D    YRFLD +            +   +     +  ++
Sbjct: 76  HVDQERHFQDKYLFYRFLDDEREDAPLPTEEEKKECDEELQDTMLLLS 123

>d1fsha_ a.4.5.31 (A:) Segment polarity protein Dishevelled-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Segment polarity protein Dishevelled-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.2 bits (177), Expect = 4e-16
 Identities = 19/95 (20%), Positives = 42/95 (44%), Gaps = 3/95 (3%)

Query: 525 EDDLSSSGAIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSE--DQYLERE 582
           E  L+    +  +  ++      + ++DR +      N  +G++ V++L    + + ER 
Sbjct: 1   EAPLTVKSDMSAIVRVMQLPDSGLEIRDRMWLKITIANAVIGADVVDWLYTHVEGFKERR 60

Query: 583 EAVEFGRKLASKLFFRHVLDENLFEDGNHLYRFLD 617
           EA ++   +    F RH +++  F +    Y F D
Sbjct: 61  EARKYASSMLKHGFLRHTVNKITFSEQ-CYYVFGD 94

>d1v3fa_ a.4.5.31 (A:) Pleckstrin 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 120

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Pleckstrin 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.4 bits (159), Expect = 2e-13
 Identities = 27/116 (23%), Positives = 38/116 (32%), Gaps = 16/116 (13%)

Query: 531 SGAIDELALIVLKMKEN---VVVKDRFYKMRRFTNCFLGSEAVNFLSEDQY-LEREEAVE 586
           S     L  IV KM +    +       +   +   FLGS  V++L    +   R EAV 
Sbjct: 2   SSGSSGLHRIVDKMHDTSTGIRPSPNMEQGSTYKKTFLGSSLVDWLISSNFAASRLEAVT 61

Query: 587 FGRKLASKLFFRHVLD-----------ENLFEDGNH-LYRFLDHDPLVSSQCHNIP 630
               L  + F R V                F D +  LY F +      S   + P
Sbjct: 62  LASMLMEENFLRPVGVRSMGAIRSGDLAEQFLDDSTALYTFAESYKKKVSSKESGP 117

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} Length = 82

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

 Score = 61.1 bits (148), Expect = 2e-12
 Identities = 24/80 (30%), Positives = 43/80 (53%)

Query: 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILM 486
           V +YT+  C      +  L  K + + E+ ID   +++ E+ K +G + VP++F +   +
Sbjct: 3   VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHI 62

Query: 487 GGLSELKALDESGKLDEKIE 506
           GG  +L ALD  G LD  ++
Sbjct: 63  GGYDDLYALDARGGLDPLLK 82

>d2csoa1 a.4.5.31 (A:8-122) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (148), Expect = 5e-12
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 15/97 (15%)

Query: 537 LALIVLKMKEN---VVVKDRFYKMRRFTNCFLGSEAVNFL-SEDQYLEREEAVEFGRKLA 592
           L  + L MK+    +   +     + F +CF G+  +++L S      R+E +     L 
Sbjct: 11  LGALYLSMKDTEKGIKELNLEKDKKIFNHCFTGNCVIDWLVSNQSVRNRQEGLMIASSLL 70

Query: 593 SKLFFRHVLD----------ENLFEDGNH-LYRFLDH 618
           ++ + +   D          EN F D     Y F D 
Sbjct: 71  NEGYLQPAGDMSKSAVDGTAENPFLDNPDAFYYFPDS 107

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 51.6 bits (123), Expect = 1e-08
 Identities = 19/94 (20%), Positives = 47/94 (50%), Gaps = 6/94 (6%)

Query: 419 QPLVMKGRVILYTRLGCQESREVR-----LFLYWKRLRYVEINIDVYPS-RKMELEKFAG 472
              +  G+V+++ +  C   R+ +     L      L +V+I      +  +  L++  G
Sbjct: 6   NSKIQPGKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTG 65

Query: 473 SSAVPKVFFNEILMGGLSELKALDESGKLDEKIE 506
           +  VP+VF  +  +GG ++L+++ + G+L  +++
Sbjct: 66  ARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQ 99

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 109

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.8 bits (121), Expect = 2e-08
 Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 3/96 (3%)

Query: 411 QEVVKEPPQPLVMKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKF 470
           + +  +    L MKG         C  S+++   L    + Y   +I      +  L+ F
Sbjct: 9   KVLTNKASVMLFMKGNK---QEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTF 65

Query: 471 AGSSAVPKVFFNEILMGGLSELKALDESGKLDEKIE 506
           +     P+++    L+GGL  +K L ++G+L   ++
Sbjct: 66  SNWPTYPQLYVRGDLVGGLDIVKELKDNGELLPILK 101

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} Length = 74

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

 Score = 47.2 bits (112), Expect = 1e-07
 Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 423 MKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFN 482
           ++  + ++T+ GC    + +  L+ K L + EI +    +    +   +G + VP+VF  
Sbjct: 3   VQESISIFTKPGCPFCAKAKQLLHDKGLSFEEIILGHDATIVS-VRAVSGRTTVPQVFIG 61

Query: 483 EILMGGLSELK 493
              +GG  +L+
Sbjct: 62  GKHIGGSDDLE 72

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} Length = 76

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

 Score = 45.8 bits (108), Expect = 5e-07
 Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 423 MKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFN 482
           M+  + +YTR  C +    +  +  +   +  IN+D  P     L        +P V   
Sbjct: 1   MR--ITIYTRNDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRAQGFRQ-LPVVIAG 57

Query: 483 EILMGGLS--ELKALDES 498
           ++   G     +  L  +
Sbjct: 58  DLSWSGFRPDMINRLHPA 75

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 93

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.7 bits (103), Expect = 4e-06
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 8/87 (9%)

Query: 425 GRVILYTRLGC------QESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA--GSSAV 476
             + +Y+           +  EV   L  KR++Y  ++I    + + E+   A    +  
Sbjct: 2   SGLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATP 61

Query: 477 PKVFFNEILMGGLSELKALDESGKLDE 503
           P++       G         E   L E
Sbjct: 62  PQIVNGNHYCGDYELFVEAVEQDTLQE 88

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

 Score = 42.7 bits (100), Expect = 8e-06
 Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 9/82 (10%)

Query: 423 MKGRVILYTRLGCQESREVRLFLYWKRLR-----YVEINIDVYPSRKMELEKFA--GSSA 475
           M+   +++ R GC      +              Y  ++I      K +L++ A      
Sbjct: 1   MQ--TVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVET 58

Query: 476 VPKVFFNEILMGGLSELKALDE 497
           VP++F ++  +GG ++  A  +
Sbjct: 59  VPQIFVDQQHIGGYTDFAAWVK 80

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} Length = 74

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

 Score = 40.8 bits (95), Expect = 3e-05
 Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 5/75 (6%)

Query: 423 MKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFN 482
           M   + LYT+  C +    +  L    L Y  ++I +    +  +         P V  +
Sbjct: 1   MS--ITLYTKPACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMALGYVQ-APVVEVD 57

Query: 483 EILMGGLS--ELKAL 495
                G     +K L
Sbjct: 58  GEHWSGFRPERIKQL 72

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	893
d1fsha_	94	Segment polarity protein Dishevelled-1 {Mouse (Mus	99.87
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	99.86
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	99.84
d1o7fa1	142	Regulatory domain of epac2, domain 2 {Mouse (Mus m	99.82
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	99.81
d2csoa1	115	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1v3fa_	120	Pleckstrin 2 {Mouse (Mus musculus) [TaxId: 10090]}	99.79
d1t1va_	93	SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}	99.75
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	99.73
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	99.66
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	99.66
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	99.65
d1abaa_	87	Glutaredoxin (Grx, thioltransferase) {Bacteriophag	99.57
d1wjka_	100	Thioredoxin-like structure containing protein C330	99.03
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	98.6
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	98.5
d1g7oa2	75	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	98.48
d1z9ha2	113	Microsomal prostaglandin E synthase-2 {Crab-eating	98.27
d1v2aa2	83	Class delta GST {Mosquito (Anopheles dirus b), iso	98.15
d1oyja2	84	Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}	98.15
d1eema2	98	Class omega GST {Human (Homo sapiens) [TaxId: 9606	98.13
d1e6ba2	80	Class zeta GST {Mouse-ear cress (Arabidopsis thali	98.13
d1gwca2	83	Class tau GST {Aegilops tauschii, also known as Tr	98.12
d1k0da2	92	Yeast prion protein ure2p, nitrogen regulation fra	98.12
d1k0ma2	86	Chloride intracellular channel 1 (clic1) {Human (H	98.12
d1ljra2	79	Class theta GST {Human (Homo sapiens) [TaxId: 9606	97.93
d1aw9a2	81	Class phi GST {Maize (Zea mays), type III [TaxId:	97.91
d1axda2	80	Class phi GST {Maize (Zea mays), type I [TaxId: 45	97.86
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	97.86
d1r5aa2	85	Class delta GST {Mosquito (Anopheles dirus b), iso	97.85
d1fw1a2	83	Class zeta GST {Human (Homo sapiens) [TaxId: 9606]	97.79
d1jlva2	84	Class delta GST {Mosquito (Anopheles dirus b), iso	97.77
d1gnwa2	84	Class phi GST {Mouse-ear cress (Arabidopsis thalia	97.76
d1z3ea1	114	Regulatory protein Spx {Bacillus subtilis [TaxId:	97.48
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	97.48
d1rw1a_	114	Hypothetical protein PA3664 (YffB) {Pseudomonas ae	97.22
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	97.2
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	97.04
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	97.04
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	96.94
d2a2ra2	77	Class pi GST {Human (Homo sapiens) [TaxId: 9606]}	96.9
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	96.88
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	96.86
d1j9ba_	138	Arsenate reductase ArsC {Escherichia coli [TaxId:	96.86
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	96.72
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	96.61
d2cvda2	74	Class sigma GST {Human (Homo sapiens) [TaxId: 9606	96.61
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	96.59
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	96.51
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	96.5
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	96.48
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	96.41
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	96.34
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	96.29
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	96.26
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	96.15
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	96.14
d1okta2	85	Pf GST {Malarial parasite (Plasmodium falciparum)	96.11
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	95.9
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	95.66
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	95.61
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	95.38
d1gula2	77	Class alpha GST {Human (Homo sapiens), (a1-1) [Tax	95.2
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	95.13
d1tu7a2	77	Class pi GST {Onchocerca volvulus [TaxId: 6282]}	95.04
d2gsqa2	75	Class sigma GST {Squid (Ommastrephes sloani pacifi	94.96
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	94.93
d1m0ua2	76	Class sigma GST {Fruit fly (Drosophila melanogaste	94.65
d1tw9a2	77	Class sigma GST {Heligmosomoides polygyrus [TaxId:	94.34
d1b48a2	78	Class alpha GST {Mouse (Mus musculus), (a1-4) [Tax	94.31
d1n2aa2	80	Class beta GST {Escherichia coli [TaxId: 562]}	94.1
d1nhya2	75	GST-like domain of elongation factor 1-gamma {Bake	94.06
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	93.68
d1f2ea2	80	Class beta GST {Sphingomonas paucimobilis [TaxId:	93.63
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	93.63
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	93.1
d1pmta2	80	Class beta GST {Proteus mirabilis [TaxId: 584]}	93.02
d1k3ya2	79	Class alpha GST {Human (Homo sapiens), (a1-1) [Tax	92.74
d2c4ja2	84	Class mu GST {Human (Homo sapiens) [TaxId: 9606]}	92.64
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	92.58
d2axoa1	225	Hypothetical protein Atu2684 {Agrobacterium tumefa	92.4
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	92.4
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	92.39
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	92.23
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	92.05
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	91.55
d1xg8a_	111	Hypothetical protein SA0798 {Staphylococcus aureus	90.12
d2fnoa2	87	Hypothetical protein AGR_pAT_752p/Atu5508 {Agrobac	89.92
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	86.99
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	86.1
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	84.29
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	83.23
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	81.74
d1fhea2	80	Class alpha GST {Fasciola hepatica [TaxId: 6192]}	81.0

>d1fsha_ a.4.5.31 (A:) Segment polarity protein Dishevelled-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Segment polarity protein Dishevelled-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.7e-22  Score=154.95  Aligned_cols=90  Identities=20%  Similarity=0.423  Sum_probs=83.2

Q ss_pred             CCCCCCCHHHHHHHHHHCCCCCEEECCCCCEEEECCCCCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             88885339999999995038711110200116603554634689999861--0268899999999997233331124655
Q 002682          527 DLSSSGAIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED--QYLEREEAVEFGRKLASKLFFRHVLDEN  604 (893)
Q Consensus       527 ~~S~s~~L~eLa~ii~~mk~gi~IKDRr~~LrtYk~CF~GsELVDWLie~--~v~sReEAv~lGQ~Lle~GlI~hV~~~~  604 (893)
                      +++.+.++..++..|+++..|+.++||+|++++|++||+|+|+|+||+++  .+.+|+||+.+||.|++.|+|+||.++|
T Consensus         3 ~l~~~~~l~~iv~~M~~~~~Gl~i~dr~~~~~~y~~~F~G~e~V~WL~~~~~~~~~r~eAv~lgq~Ll~~g~i~hv~~~~   82 (94)
T d1fsha_           3 PLTVKSDMSAIVRVMQLPDSGLEIRDRMWLKITIANAVIGADVVDWLYTHVEGFKERREARKYASSMLKHGFLRHTVNKI   82 (94)
T ss_dssp             SCCSSSCHHHHHHHHHSTTSSSCSSCEEETTEEESSCCHHHHHHHHHHHHCCCCSSHHHHHHHHHHHHHTTTEECSSSSC
T ss_pred             CCCCCCCHHHHHHHHHCCCCCCEEEEEEECCEECCCCEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEECCCCC
T ss_conf             76434789999999868789981476776138762120049999999984524589999999999999879468778887


Q ss_pred             CCCCCCCEEEECC
Q ss_conf             4456773279627
Q 002682          605 LFEDGNHLYRFLD  617 (893)
Q Consensus       605 ~F~D~~~LYRF~~  617 (893)
                      .|.|+ +||||.+
T Consensus        83 ~F~D~-~~YrF~~   94 (94)
T d1fsha_          83 TFSEQ-CYYVFGD   94 (94)
T ss_dssp             CCCSS-SCCEECC
T ss_pred             CCCCC-CEEEECC
T ss_conf             64168-7577188

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=99.86  E-value=7.5e-22  Score=150.92  Aligned_cols=81  Identities=30%  Similarity=0.533  Sum_probs=78.8

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCEEECCCHHHHHHHHCCCCHHHH
Q ss_conf             39999819993499999999855992399985799468999999939999544997471304507679767449616999
Q 002682          426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDEKI  505 (893)
Q Consensus       426 kIvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d~e~reELkk~sG~~TVPqIFInGe~IGG~DeL~eL~esGeL~~lL  505 (893)
                      .|+|||+++||||.+||++|+.+|++|+++||+.+++.++++.+.+|++||||||+||++||||+++.+++++|+|+++|
T Consensus         2 ~I~iys~~~Cp~C~~ak~~L~~~~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~i~~~~IGG~~el~~l~~~g~L~~lL   81 (82)
T d1fova_           2 NVEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHIGGYDDLYALDARGGLDPLL   81 (82)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEETTEEEESHHHHHHHHHTTCSHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCEEEECHHHHHHHHHCCCHHHHH
T ss_conf             68999479997599999999874998178705221999999999848987886999998985679999999869888981


Q ss_pred             H
Q ss_conf             9
Q 002682          506 E  506 (893)
Q Consensus       506 k  506 (893)
                      +
T Consensus        82 k   82 (82)
T d1fova_          82 K   82 (82)
T ss_dssp             C
T ss_pred             C
T ss_conf             9

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=2.4e-21  Score=147.77  Aligned_cols=87  Identities=22%  Similarity=0.340  Sum_probs=81.3

Q ss_pred             CCCCEEEEEC-----CCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCEEECCCHHHHHHHH
Q ss_conf             9773999981-----99934999999998559923999857994689999999399995449974713045076797674
Q 002682          423 MKGRVILYTR-----LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE  497 (893)
Q Consensus       423 MkgkIvIYTk-----sgCp~CkrAK~lL~~~GI~YeeIDId~d~e~reELkk~sG~~TVPqIFInGe~IGG~DeL~eL~e  497 (893)
                      ...+|+||++     |.||||++||++|+.++++|.+++++.+++.++++.+.++++|||||||+|++|||+++|++|++
T Consensus        13 ~~~~VvvF~Kgt~~~p~Cp~c~~ak~lL~~~~i~~~~~~v~~~~~~~~~l~~~t~~~TvPqIFi~g~~IGG~ddl~~l~~   92 (109)
T d1wika_          13 NKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQLYVRGDLVGGLDIVKELKD   92 (109)
T ss_dssp             TTSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCEEECSSSEEECHHHHHHHHH
T ss_pred             HCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEECCEEECCHHHHHHHHH
T ss_conf             53988999678999998838999999999607885499753417789999985599978868899989868899999998


Q ss_pred             CCCCHHHHHHHH
Q ss_conf             496169999987
Q 002682          498 SGKLDEKIEYLI  509 (893)
Q Consensus       498 sGeL~~lLk~~~  509 (893)
                      +|+|.++|+...
T Consensus        93 ~G~L~~lL~~~~  104 (109)
T d1wika_          93 NGELLPILKGES  104 (109)
T ss_dssp             HTCSHHHHHTCC
T ss_pred             CCCHHHHHHHCC
T ss_conf             798999997537

>d1o7fa1 a.4.5.31 (A:180-321) Regulatory domain of epac2, domain 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Regulatory domain of epac2, domain 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=8.6e-21  Score=144.34  Aligned_cols=78  Identities=27%  Similarity=0.514  Sum_probs=72.1

Q ss_pred             CCCCEEECCCCCEEEECCCCCCHHHHHHHHHH-C-CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf             38711110200116603554634689999861-0-268899999999997233331124655445677327962799853
Q 002682          545 KENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-Q-YLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYRFLDHDPLV  622 (893)
Q Consensus       545 k~gi~IKDRr~~LrtYk~CF~GsELVDWLie~-~-v~sReEAv~lGQ~Lle~GlI~hV~~~~~F~D~~~LYRF~~ddP~~  622 (893)
                      +.+..||||+|++++|++||+|+|||+||+++ . +.+|.+|+.+||.|++.|+|+||.+++.|+|+++||||..+++..
T Consensus        20 ~~~~likdr~~~l~~y~~cF~G~elVdWL~~~~~~~~sR~eAv~lgq~Ll~~g~i~hV~~~~~F~D~~~lYrF~~d~~~~   99 (142)
T d1o7fa1          20 RAPHMIRDRKYHLKTYRQCCVGTELVDWMIQQTSCVHSRTQAVGMWQVLLEDGVLNHVDQERHFQDKYLFYRFLDDERED   99 (142)
T ss_dssp             HCGGGSEEEECSSCEEEEEEEHHHHHHHHHHSSSCCSCHHHHHHHHHHHHHTTSEEESSCCSSCCSSSCEEEEGGGSSSS
T ss_pred             CCCCCCCEEEECCEEECCEEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCEECCCEEEEECCCCCCC
T ss_conf             28753400178889837765709999999984777799999999999999889866368986775499889970087766

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.81  E-value=3.7e-20  Score=140.44  Aligned_cols=87  Identities=21%  Similarity=0.473  Sum_probs=74.2

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCC-----EEEEECCCCHHH-HHHHHHHHCCCCCCEEEECCEEECCCHHHHHHH
Q ss_conf             97739999819993499999999855992-----399985799468-999999939999544997471304507679767
Q 002682          423 MKGRVILYTRLGCQESREVRLFLYWKRLR-----YVEINIDVYPSR-KMELEKFAGSSAVPKVFFNEILMGGLSELKALD  496 (893)
Q Consensus       423 MkgkIvIYTksgCp~CkrAK~lL~~~GI~-----YeeIDId~d~e~-reELkk~sG~~TVPqIFInGe~IGG~DeL~eL~  496 (893)
                      ..++|+|||+++||||.+||++|.+++++     |.++|+..+... ++.+.+.+|++|||||||+|++||||++|.+++
T Consensus        10 ~~~~Vviysk~~Cp~C~~ak~ll~~~~~~~~~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIfi~g~~IGG~~el~~l~   89 (105)
T d1ktea_          10 QPGKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFIGKECIGGCTDLESMH   89 (105)
T ss_dssp             CTTCEEEEECSSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECHHHHHHHH
T ss_conf             15979999779990599999999983984441246520356641888888850367876767999997983689999999


Q ss_pred             HCCCCHHHHHHHH
Q ss_conf             4496169999987
Q 002682          497 ESGKLDEKIEYLI  509 (893)
Q Consensus       497 esGeL~~lLk~~~  509 (893)
                      ++|+|..+|+.+-
T Consensus        90 ~~G~L~~~L~~~G  102 (105)
T d1ktea_          90 KRGELLTRLQQVG  102 (105)
T ss_dssp             HHTHHHHHHHHHT
T ss_pred             HCCCHHHHHHHCC
T ss_conf             8798999999748

>d2csoa1 a.4.5.31 (A:8-122) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=6.1e-20  Score=139.07  Aligned_cols=93  Identities=20%  Similarity=0.334  Sum_probs=84.4

Q ss_pred             CCCCCCCCHHHHHHHHHHCCCCCEEECCCCCEEEECCCCCCHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCCCCCCC--
Q ss_conf             888885339999999995038711110200116603554634689999861-02688999999999972333311246--
Q 002682          526 DDLSSSGAIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLD--  602 (893)
Q Consensus       526 ~~~S~s~~L~eLa~ii~~mk~gi~IKDRr~~LrtYk~CF~GsELVDWLie~-~v~sReEAv~lGQ~Lle~GlI~hV~~--  602 (893)
                      ..+..++++.+|+..|+++..|+.+++|++++++|++||+|+|+|+||+++ .+.+|.||+.+||.|++.|+|+||.+  
T Consensus         3 ~rl~~~~~l~~l~~~m~d~~~Gi~~~~~~~~~~~y~~cF~G~e~V~WL~~~~~~~~r~eAv~lgq~Ll~~g~I~~V~d~~   82 (115)
T d2csoa1           3 IRLPETIDLGALYLSMKDTEKGIKELNLEKDKKIFNHCFTGNCVIDWLVSNQSVRNRQEGLMIASSLLNEGYLQPAGDMS   82 (115)
T ss_dssp             CSSCTTCCHHHHHHHHHSSSSSCCCEEEEETTEEEEEEEEHHHHHHHHHHTTSCSSHHHHHHHHHHHHHHTSSEEESHHH
T ss_pred             CCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEECCCCC
T ss_conf             33557799999999963989996006765687666331557999999998688899999999999999889948874532


Q ss_pred             --------CCCCCCC-CCEEEECCC
Q ss_conf             --------5544567-732796279
Q 002682          603 --------ENLFEDG-NHLYRFLDH  618 (893)
Q Consensus       603 --------~~~F~D~-~~LYRF~~d  618 (893)
                              .+.|.|+ +.||||++.
T Consensus        83 ~~~~~~~~~~~F~d~~~~lYrF~~~  107 (115)
T d2csoa1          83 KSAVDGTAENPFLDNPDAFYYFPDS  107 (115)
T ss_dssp             HHHHHSSCSCCCCCCTTCEEECSSS
T ss_pred             CCCCCCCCCCCCCCCCCCEEEECCC
T ss_conf             1112455556301699887986899

>d1v3fa_ a.4.5.31 (A:) Pleckstrin 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Pleckstrin 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=9.6e-20  Score=137.84  Aligned_cols=92  Identities=23%  Similarity=0.289  Sum_probs=81.9

Q ss_pred             CCCCCHHHHHHHHHHCCCCCEEECCCCCEEEECCCCCCHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCCCCCCC-----
Q ss_conf             885339999999995038711110200116603554634689999861-02688999999999972333311246-----
Q 002682          529 SSSGAIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLD-----  602 (893)
Q Consensus       529 S~s~~L~eLa~ii~~mk~gi~IKDRr~~LrtYk~CF~GsELVDWLie~-~v~sReEAv~lGQ~Lle~GlI~hV~~-----  602 (893)
                      +.+..+.+|+..|++...|+.+++|++++++|++||+|+|+|+||+++ .+.+|.||+.+||.|++.|+|+||..     
T Consensus         3 ~~~~~l~~i~~~m~~~~~Gv~~~~~~~~~~~y~~cF~G~e~VdWL~~~~~~~~R~eA~~lgq~Ll~~g~i~~V~~~~~~~   82 (120)
T d1v3fa_           3 SGSSGLHRIVDKMHDTSTGIRPSPNMEQGSTYKKTFLGSSLVDWLISSNFAASRLEAVTLASMLMEENFLRPVGVRSMGA   82 (120)
T ss_dssp             CSCSHHHHHHHHHTCSSSSCCCCCCCSSSSCCSSCEEHHHHHHHHHHTTSCSSHHHHHHHHHHHHHHTSEEECSSSSCSS
T ss_pred             CCCHHHHHHHHHHHCCCCCCEEEEEEECCEECCCEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEECCCCCCHH
T ss_conf             73046999999972989991127888888885768782999999998267799999999999999889979864443100


Q ss_pred             ------CCCCCCC-CCEEEECCCCC
Q ss_conf             ------5544567-73279627998
Q 002682          603 ------ENLFEDG-NHLYRFLDHDP  620 (893)
Q Consensus       603 ------~~~F~D~-~~LYRF~~ddP  620 (893)
                            .+.|.|+ ..||||.+...
T Consensus        83 ~~~~~~~~~F~d~~~~lYrF~~~~~  107 (120)
T d1v3fa_          83 IRSGDLAEQFLDDSTALYTFAESYK  107 (120)
T ss_dssp             CCCSSCCCCCCCSSSCEEEECSSSC
T ss_pred             HCCCCCCCCEECCCCCEEEECCCCC
T ss_conf             1046656642049978798788777

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=3.5e-18  Score=128.18  Aligned_cols=84  Identities=20%  Similarity=0.283  Sum_probs=78.2

Q ss_pred             CCCCEEEEECCCC------HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCC--CCCCEEEECCEEECCCHHHHH
Q ss_conf             9773999981999------34999999998559923999857994689999999399--995449974713045076797
Q 002682          423 MKGRVILYTRLGC------QESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGS--SAVPKVFFNEILMGGLSELKA  494 (893)
Q Consensus       423 MkgkIvIYTksgC------p~CkrAK~lL~~~GI~YeeIDId~d~e~reELkk~sG~--~TVPqIFInGe~IGG~DeL~e  494 (893)
                      |. .|+||++++|      ++|.+|+++|+.++|+|+++||+.++..++++.+++|+  +++||||+||++||||+++.+
T Consensus         1 m~-~i~vy~ts~~~~~~~~~~~~r~~~lL~~~~I~y~~iDi~~d~~~~~~~~~~~g~~~~t~Pqifv~~~~iGg~del~~   79 (93)
T d1t1va_           1 MS-GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNGNHYCGDYELFVE   79 (93)
T ss_dssp             CC-CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEETTEEEEEHHHHHH
T ss_pred             CC-CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEECCEEEECHHHHHH
T ss_conf             99-77999815767711499999999999987996499971573667778888606898506899999989946999999


Q ss_pred             HHHCCCCHHHHHH
Q ss_conf             6744961699999
Q 002682          495 LDESGKLDEKIEY  507 (893)
Q Consensus       495 L~esGeL~~lLk~  507 (893)
                      ++++|+|.++|+.
T Consensus        80 ~~e~g~L~~~lk~   92 (93)
T d1t1va_          80 AVEQDTLQEFLKL   92 (93)
T ss_dssp             HHHTTCHHHHTTC
T ss_pred             HHHCCCHHHHHCC
T ss_conf             9977989999543

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=99.73  E-value=7.8e-18  Score=126.00  Aligned_cols=71  Identities=23%  Similarity=0.447  Sum_probs=64.7

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCEEECCCHHHHH
Q ss_conf             977399998199934999999998559923999857994689999999399995449974713045076797
Q 002682          423 MKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKA  494 (893)
Q Consensus       423 MkgkIvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d~e~reELkk~sG~~TVPqIFInGe~IGG~DeL~e  494 (893)
                      |..+|+|||+++||||++||++|.++|++|++++|+.+.. ++++.+.+|+.+|||||+||++||||++|.+
T Consensus         3 ~~~~I~iYs~~~C~~C~~ak~lL~~~~i~~~~~~v~~~~~-~~~~~~~~~~~tvP~i~i~g~~IGG~~el~~   73 (74)
T d1nm3a1           3 VQESISIFTKPGCPFCAKAKQLLHDKGLSFEEIILGHDAT-IVSVRAVSGRTTVPQVFIGGKHIGGSDDLEK   73 (74)
T ss_dssp             CCCCEEEEECSSCHHHHHHHHHHHHHTCCCEEEETTTTCC-HHHHHHHTCCSSSCEEEETTEEEESHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHH-HHHHHHHHCCCCCCEEEECCEEEECHHHHHH
T ss_conf             7672899978999779999999997499729997168699-9999998299658889999989977587852

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=1.7e-17  Score=123.95  Aligned_cols=73  Identities=21%  Similarity=0.416  Sum_probs=65.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCC-----CCEEEEECCCCHHHHHHHHHHHCC--CCCCEEEECCEEECCCHHHHHHHHC
Q ss_conf             399998199934999999998559-----923999857994689999999399--9954499747130450767976744
Q 002682          426 RVILYTRLGCQESREVRLFLYWKR-----LRYVEINIDVYPSRKMELEKFAGS--SAVPKVFFNEILMGGLSELKALDES  498 (893)
Q Consensus       426 kIvIYTksgCp~CkrAK~lL~~~G-----I~YeeIDId~d~e~reELkk~sG~--~TVPqIFInGe~IGG~DeL~eL~es  498 (893)
                      +|+|||+++||||.+||++|.++|     ++|++++++.+++.++++.+..+.  .||||||+||++||||++|.++.++
T Consensus         2 kvviysk~~Cp~C~~aK~ll~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi~g~~IGG~~el~~~~~~   81 (85)
T d1egoa_           2 QTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFVDQQHIGGYTDFAAWVKE   81 (85)
T ss_dssp             EEEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEETTEEEESSHHHHHHHHH
T ss_pred             EEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCEEEECHHHHHHHHHH
T ss_conf             89999579997699999999982997777339999657898999999998358999879899999999778999999986

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=99.66  E-value=2.1e-16  Score=117.14  Aligned_cols=70  Identities=21%  Similarity=0.315  Sum_probs=62.4

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCEEECCCH--HHHHH
Q ss_conf             97739999819993499999999855992399985799468999999939999544997471304507--67976
Q 002682          423 MKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLS--ELKAL  495 (893)
Q Consensus       423 MkgkIvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d~e~reELkk~sG~~TVPqIFInGe~IGG~D--eL~eL  495 (893)
                      |+  |+|||+++||+|.+||++|.++|++|++++|+.+++..++++. .|.++||+||+||++||||+  .|.+|
T Consensus         1 M~--v~iYt~~~C~~C~~ak~~L~~~~i~~~~~~i~~~~~~~~~~~~-~g~~tvP~i~i~g~~igGf~~d~l~~L   72 (74)
T d1r7ha_           1 MS--ITLYTKPACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMA-LGYVQAPVVEVDGEHWSGFRPERIKQL   72 (74)
T ss_dssp             CC--EEEEECTTCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHH-TTCBCCCEEEETTEEEESCCHHHHHHH
T ss_pred             CE--EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH-HCCCCCCEEEECCEEEECCCHHHHHHH
T ss_conf             98--9999489896089999999973996489972489899999998-479970979999999958898499882

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=2.6e-16  Score=116.55  Aligned_cols=71  Identities=21%  Similarity=0.415  Sum_probs=63.4

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCEEECCC--HHHHHHH
Q ss_conf             9773999981999349999999985599239998579946899999993999954499747130450--7679767
Q 002682          423 MKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGL--SELKALD  496 (893)
Q Consensus       423 MkgkIvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d~e~reELkk~sG~~TVPqIFInGe~IGG~--DeL~eL~  496 (893)
                      |+  |+||++++||+|.+|+++|+++|++|+++||+.+++..++++. .|.++||+|++||++||||  |.+.+|+
T Consensus         1 Mk--i~iYs~~~C~~C~~ak~~L~~~~i~y~~~~i~~~~~~~~~~~~-~g~~tvP~i~i~~~~i~Gf~~d~i~~L~   73 (76)
T d1h75a_           1 MR--ITIYTRNDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRA-QGFRQLPVVIAGDLSWSGFRPDMINRLH   73 (76)
T ss_dssp             CC--EEEEECTTCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHH-TTCCSSCEEEETTEEEESCCHHHHGGGS
T ss_pred             CE--EEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHH-CCCCCCCEEEECCEEEECCCHHHHHHHH
T ss_conf             98--9999389895379999999862953689860589999999886-1799779899999999778989998875

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.57  E-value=5e-15  Score=108.62  Aligned_cols=71  Identities=21%  Similarity=0.259  Sum_probs=59.6

Q ss_pred             EEEEECCC----CHHHHHHHHHHHHCCCCEEEEECCCC-----HHHHHHHHHHH-----CCCCCCEEEE-CCEEECCCHH
Q ss_conf             99998199----93499999999855992399985799-----46899999993-----9999544997-4713045076
Q 002682          427 VILYTRLG----CQESREVRLFLYWKRLRYVEINIDVY-----PSRKMELEKFA-----GSSAVPKVFF-NEILMGGLSE  491 (893)
Q Consensus       427 IvIYTksg----Cp~CkrAK~lL~~~GI~YeeIDId~d-----~e~reELkk~s-----G~~TVPqIFI-nGe~IGG~De  491 (893)
                      ++||++++    ||||.+||++|.++|++|++++++.+     ...++++.+..     |++||||||| ||++||||++
T Consensus         2 ~~Iy~~~~~~~~C~~C~~AK~lL~~~~i~y~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~TvPqIfi~dg~~IGG~de   81 (87)
T d1abaa_           2 FKVYGYDSNIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGFDQ   81 (87)
T ss_dssp             EEEEECCTTTSCCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESHHH
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEECEEEECCCCEEECHHH
T ss_conf             89997189999885599999999980998523364312121379999999999536678996427399639959877999


Q ss_pred             HHHHHH
Q ss_conf             797674
Q 002682          492 LKALDE  497 (893)
Q Consensus       492 L~eL~e  497 (893)
                      |.++.+
T Consensus        82 l~e~~k   87 (87)
T d1abaa_          82 LREYFK   87 (87)
T ss_dssp             HHHHTC
T ss_pred             HHHHHC
T ss_conf             999859

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=1.8e-10  Score=80.41  Aligned_cols=79  Identities=15%  Similarity=0.241  Sum_probs=62.2

Q ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCEEE--CCCHHHHHHHHC
Q ss_conf             799773999981999349999999985599239998579946899999993999954499747130--450767976744
Q 002682          421 LVMKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILM--GGLSELKALDES  498 (893)
Q Consensus       421 ~~MkgkIvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d~e~reELkk~sG~~TVPqIFInGe~I--GG~DeL~eL~es  498 (893)
                      ..|+ .|++|+++|||+|++++.+|++...+|...++..+.+..++|.+.++.+ +|+|+|+|+.+  |.+++       
T Consensus        14 ~~~p-~i~lft~~~C~~C~~a~~~L~~~~~~~~~~~v~vd~~~~~~l~~~y~~~-VPvl~idg~~~~~g~~d~-------   84 (100)
T d1wjka_          14 RALP-VLTLFTKAPCPLCDEAKEVLQPYKDRFILQEVDITLPENSTWYERYKFD-IPVFHLNGQFLMMHRVNT-------   84 (100)
T ss_dssp             CCCC-EEEEEECSSCHHHHHHHHHTSTTSSSSEEEEEETTSSTTHHHHHHSSSS-CSEEEESSSEEEESSCCH-------
T ss_pred             CCCC-EEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHCCC-CCCEEECCCEEEECCCCH-------
T ss_conf             9997-8999879999975999999998643235699863564579999985665-773364696479678999-------


Q ss_pred             CCCHHHHHHH
Q ss_conf             9616999998
Q 002682          499 GKLDEKIEYL  508 (893)
Q Consensus       499 GeL~~lLk~~  508 (893)
                      .+|.+.|+.+
T Consensus        85 ~~L~~~L~~l   94 (100)
T d1wjka_          85 SKLEKQLRKL   94 (100)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHHHH
T ss_conf             9999999997

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=98.60  E-value=6.7e-08  Score=64.42  Aligned_cols=60  Identities=20%  Similarity=0.123  Sum_probs=48.0

Q ss_pred             EEEEECCCCHHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCEEECC--CHH
Q ss_conf             999981999349999999985-59923999857994689999999399995449974713045--076
Q 002682          427 VILYTRLGCQESREVRLFLYW-KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGG--LSE  491 (893)
Q Consensus       427 IvIYTksgCp~CkrAK~lL~~-~GI~YeeIDId~d~e~reELkk~sG~~TVPqIFInGe~IGG--~De  491 (893)
                      |++||+++|+.|..|+++|.+ .++.|+++||+.+++    +.+++|.+ ||+|.+++...-+  |+.
T Consensus         2 ltLyt~~~C~LCe~A~~~l~~~~~~~~~~vdI~~d~~----l~~~y~~~-IPVl~~~~~~~l~w~fd~   64 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALAQARAGAFFSVFIDDDAA----LESAYGLR-VPVLRDPMGRELDWPFDA   64 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCCEEEEECTTCHH----HHHHHTTT-CSEEECTTCCEEESCCCH
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHH----HHHHHCCE-EEEEEECCEEEECCCCCH
T ss_conf             8999889961799999999860698479997458999----99974980-139997991398586599

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.50  E-value=3e-07  Score=60.36  Aligned_cols=70  Identities=24%  Similarity=0.337  Sum_probs=52.5

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCEEEC-CC---HHHHHHH
Q ss_conf             39999819993499999999855-----992399985799468999999939999544997471304-50---7679767
Q 002682          426 RVILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMG-GL---SELKALD  496 (893)
Q Consensus       426 kIvIYTksgCp~CkrAK~lL~~~-----GI~YeeIDId~d~e~reELkk~sG~~TVPqIFInGe~IG-G~---DeL~eL~  496 (893)
                      .|++|+.+|||+|+.++.+|++.     .+.+..+|++.+++    +....|..++|++|+||+.++ |.   ++|.+..
T Consensus        18 ~i~~F~s~~C~~C~~~~p~~~~~a~~~~~i~~~~vd~~~~~~----l~~~~~I~~vPt~~~ng~~~~~G~~~~~~l~~~l   93 (96)
T d1hyua4          18 EFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQN----EITERNVMGVPAVFVNGKEFGQGRMTLTEIVAKV   93 (96)
T ss_dssp             EEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHH----HHHHTTCCSSSEEEETTEEEEESCCCHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHH----HHHHCCCCCCCEEEECCEEEEECCCCHHHHHHHH
T ss_conf             999999999842688999999988757761899986310647----7754255324299999999886078999999997


Q ss_pred             HCC
Q ss_conf             449
Q 002682          497 ESG  499 (893)
Q Consensus       497 esG  499 (893)
                      ++|
T Consensus        94 esg   96 (96)
T d1hyua4          94 DTG   96 (96)
T ss_dssp             CCS
T ss_pred             HCC
T ss_conf             179

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=3.2e-07  Score=60.21  Aligned_cols=68  Identities=13%  Similarity=0.081  Sum_probs=58.6

Q ss_pred             EEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEE-CCEEECCCHHHHHHHH
Q ss_conf             999819993499999999855992399985799468999999939999544997-4713045076797674
Q 002682          428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF-NEILMGGLSELKALDE  497 (893)
Q Consensus       428 vIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d~e~reELkk~sG~~TVPqIFI-nGe~IGG~DeL~eL~e  497 (893)
                      .+|+.+.||||.+|+.+|..+|++|+.+.+..+.  .+++.+.++..+||++.. +|+.+.....+.+..+
T Consensus         2 kLY~~~~cP~~~rvr~~l~~kgi~~e~~~~~~~~--~~~~~~~~p~~~VP~L~~~dg~~i~eS~~I~~yLd   70 (75)
T d1g7oa2           2 KLYIYDHCPYCLKARMIFGLKNIPVELHVLLNDD--AETPTRMVGQKQVPILQKDDSRYMPESMDIVHYVD   70 (75)
T ss_dssp             EEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTT--THHHHHHHSSSCCCEEEETTTEEEECHHHHHHHHH
T ss_pred             EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC--HHHHHHHCCCCCEEEEEECCCCEEECHHHHHHHHH
T ss_conf             8972689972087999999719874322212116--39999769888247999769979856999999998

>d1z9ha2 c.47.1.5 (A:100-212) Microsomal prostaglandin E synthase-2 {Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Microsomal prostaglandin E synthase-2
species: Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]

Probab=98.27  E-value=7.4e-07  Score=57.94  Aligned_cols=69  Identities=22%  Similarity=0.304  Sum_probs=55.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEC----CEEECCCHHHHHHHH
Q ss_conf             399998199934999999998559923999857994689999999399995449974----713045076797674
Q 002682          426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFN----EILMGGLSELKALDE  497 (893)
Q Consensus       426 kIvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d~e~reELkk~sG~~TVPqIFIn----Ge~IGG~DeL~eL~e  497 (893)
                      +|++|+..+||||.+|+.+|..+|++|+.++++....  .+ ....+..+||++.+.    |+.++....+.+..+
T Consensus         2 ~i~LY~~~~sP~~~kvr~~L~~k~l~~~~~~v~~~~~--~~-~~~~~~~~vP~l~~~~~~~g~~i~eS~~Ii~YL~   74 (113)
T d1z9ha2           2 QLTLYQYKTCPFCSKVRAFLDFHALPYQVVEVNPVLR--AE-IKFSSYRKVPILVAQEGESSQQLNDSSVIISALK   74 (113)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHTTCCEEEEECCTTTC--GG-GTTCSCCSSCEEEEEETTEEEEECSHHHHHHHHH
T ss_pred             EEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCC--HH-HCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHH
T ss_conf             8999837998589999999997498058740574321--01-1247510233111366777358616899999999

>d1v2aa2 c.47.1.5 (A:1-83) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]

Probab=98.15  E-value=6.9e-06  Score=51.94  Aligned_cols=70  Identities=13%  Similarity=0.052  Sum_probs=59.9

Q ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHHHCCCCCCEEEECCEEECCCHHHHHHH
Q ss_conf             999981999349999999985599239998579-9468999999939999544997471304507679767
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDV-YPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD  496 (893)
Q Consensus       427 IvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~-d~e~reELkk~sG~~TVPqIFInGe~IGG~DeL~eL~  496 (893)
                      +.+|..+.||+|++++.+|..+|++|+.+.|+. ..+.++++.++++..+||++..+|..+.....+++..
T Consensus         1 m~LY~~~~Sp~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~nP~g~VP~L~~~g~~l~eS~aI~~YL   71 (83)
T d1v2aa2           1 MDYYYSLISPPCQSAILLAKKLGITLNLKKTNVHDPVERDALTKLNPQHTIPTLVDNGHVVWESYAIVLYL   71 (83)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEECCCEEECHHHHHHHH
T ss_conf             98978999867999999999939984699981888710578998753168777898462068499999999

>d1oyja2 c.47.1.5 (A:2-85) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.15  E-value=5.3e-06  Score=52.66  Aligned_cols=72  Identities=10%  Similarity=0.011  Sum_probs=59.7

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHC-CCCCCEEEECCEEECCCHHHHHHHH
Q ss_conf             739999819993499999999855992399985799468999999939-9995449974713045076797674
Q 002682          425 GRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAG-SSAVPKVFFNEILMGGLSELKALDE  497 (893)
Q Consensus       425 gkIvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d~e~reELkk~sG-~~TVPqIFInGe~IGG~DeL~eL~e  497 (893)
                      .++++|+...||+|.+++.+|..+|++|+.+.|+... ..+++.+++. ...||.+..||..+.....+.+..+
T Consensus         4 ~~l~Ly~~~~Sp~~~rvr~~L~~kgi~~e~~~v~~~~-~~~~~~~~nP~~g~vP~L~~~g~~l~eS~~I~~YL~   76 (84)
T d1oyja2           4 KELVLLDFWVSPFGQRCRIAMAEKGLEFEYREEDLGN-KSDLLLRSNPVHRKIPVLLHAGRPVSESLVILQYLD   76 (84)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTS-CCHHHHHHSTTTCCSCEEEETTEEEESHHHHHHHHH
T ss_pred             CCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCC-CCHHHHHHCCCCCCCCEEEECCCEEECHHHHHHHHH
T ss_conf             7669982789858999999999719980899971676-887888658986825689989906772999999999

>d1eema2 c.47.1.5 (A:5-102) Class omega GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class omega GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=3.1e-06  Score=54.05  Aligned_cols=73  Identities=21%  Similarity=0.127  Sum_probs=59.0

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEC-CEEECCCHHHHHHHH
Q ss_conf             77399998199934999999998559923999857994689999999399995449974-713045076797674
Q 002682          424 KGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFN-EILMGGLSELKALDE  497 (893)
Q Consensus       424 kgkIvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d~e~reELkk~sG~~TVPqIFIn-Ge~IGG~DeL~eL~e  497 (893)
                      .+++++|+...||+|.+|+.+|..+|++|+.+.|+... ..+++.++++..+||++..+ |..+..-..+.+..+
T Consensus        17 ~~~~~Ly~~~~sP~~~rv~~~l~~kgi~~e~~~v~~~~-~~~~~~~~nP~g~VPvL~~~dg~~i~eS~aI~~YL~   90 (98)
T d1eema2          17 EGSIRIYSMRFCPFAERTRLVLKAKGIRHEVININLKN-KPEWFFKKNPFGLVPVLENSQGQLIYESAITCEYLD   90 (98)
T ss_dssp             TTCEEEEECTTCHHHHHHHHHHHHTTCCEEEEEBCTTS-CCGGGGGTCTTCCSCEEEETTCCEEESHHHHHHHHH
T ss_pred             CCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCC-CCHHHHHHHCCCCCEEEEECCCCEECCHHHHHHHHH
T ss_conf             98189985799867999999999949997899963667-868887531144301599589989718999999999

>d1e6ba2 c.47.1.5 (A:8-87) Class zeta GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class zeta GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.13  E-value=6.4e-06  Score=52.14  Aligned_cols=72  Identities=17%  Similarity=0.245  Sum_probs=59.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCC--CHHHHHHHHHHHCCCCCCEEEECCEEECCCHHHHHHHH
Q ss_conf             3999981999349999999985599239998579--94689999999399995449974713045076797674
Q 002682          426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDV--YPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE  497 (893)
Q Consensus       426 kIvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~--d~e~reELkk~sG~~TVPqIFInGe~IGG~DeL~eL~e  497 (893)
                      ++++|..+.||+|.+++.+|..+|++|+.+.|+.  ......++.+.++...||++..+|..+.+-..+.....
T Consensus         1 ~m~Ly~~~~sp~~~kv~~~L~~~gi~~~~~~i~~~~~~~~~~~~~~~~p~~~vPvL~~~~~~l~eS~aI~~yL~   74 (80)
T d1e6ba2           1 KLKLYSYWRSSCAHRVRIALALKGLDYEYIPVNLLKGDQFDSDFKKINPMGTVPALVDGDVVINDSFAIIMYLD   74 (80)
T ss_dssp             CCEEEECTTCHHHHHHHHHHHHTTCCCEEEECCTTTTGGGCHHHHHHCTTCCSSEEEETTEEEESHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHCCCCCCCCEEEECCEEEECHHHHHHHHH
T ss_conf             97999479996899999999995998789997134343440888404866668889989989888999999999

>d1gwca2 c.47.1.5 (A:4-86) Class tau GST {Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]

Probab=98.12  E-value=5.5e-06  Score=52.53  Aligned_cols=71  Identities=18%  Similarity=0.149  Sum_probs=56.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHC-CCCCCEEEECCEEECCCHHHHHHHH
Q ss_conf             39999819993499999999855992399985799468999999939-9995449974713045076797674
Q 002682          426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAG-SSAVPKVFFNEILMGGLSELKALDE  497 (893)
Q Consensus       426 kIvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d~e~reELkk~sG-~~TVPqIFInGe~IGG~DeL~eL~e  497 (893)
                      ++.+|+...||||.+|+.+|..+|++|+.+.|+.... .+++.+..+ ...+|.+..+|..+..-..+.+..+
T Consensus         3 ~mkLy~~~~sp~~~rvr~~l~~kgi~~e~~~v~~~~~-~~~~~~~~~~~~~~p~l~~dg~~i~eS~~I~~YL~   74 (83)
T d1gwca2           3 DLKLLGAWPSPFVTRVKLALALKGLSYEDVEEDLYKK-SELLLKSNPVHKKIPVLIHNGAPVCESMIILQYID   74 (83)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTSC-CHHHHHHSTTTCCSCEEEETTEEEESHHHHHHHHH
T ss_pred             EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCH-HHHHHHHHHCCCCCCEEECCCCEECCHHHHHHHHH
T ss_conf             2899726898489999999998799719998742300-68999998504888624149945758999999999

>d1k0da2 c.47.1.5 (A:109-200) Yeast prion protein ure2p, nitrogen regulation fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Yeast prion protein ure2p, nitrogen regulation fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.12  E-value=7.5e-06  Score=51.72  Aligned_cols=73  Identities=14%  Similarity=0.144  Sum_probs=58.3

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCH--HHHHHHHHHHCCCCCCEEEE---CCEEECCCHHHHHHH
Q ss_conf             977399998199934999999998559923999857994--68999999939999544997---471304507679767
Q 002682          423 MKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP--SRKMELEKFAGSSAVPKVFF---NEILMGGLSELKALD  496 (893)
Q Consensus       423 MkgkIvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d~--e~reELkk~sG~~TVPqIFI---nGe~IGG~DeL~eL~  496 (893)
                      |. .+++|+.++||+|.+|+.+|+++|++|+.+.|+...  ....++.+.+...+||++..   +|..+..-..+....
T Consensus         3 ~~-~~tLY~~~~sp~~~kV~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~np~g~vP~L~d~~~~~~~l~ES~aI~~YL   80 (92)
T d1k0da2           3 LE-GYTLFSHRSAPNGFKVAIVLSELGFHYNTIFLDFNLGEHRAPEFVSVNPNARVPALIDHGMDNLSIWESGAILLHL   80 (92)
T ss_dssp             SS-SEEEEECTTCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTCTTCCSCEEEEGGGTTEEEESHHHHHHHH
T ss_pred             CC-CEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCEEEEECCCCEEECCHHHHHHHH
T ss_conf             87-6699507999558999999998699978988503677656899998752046532687313504771799999999

>d1k0ma2 c.47.1.5 (A:6-91) Chloride intracellular channel 1 (clic1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Chloride intracellular channel 1 (clic1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=5e-06  Score=52.79  Aligned_cols=71  Identities=15%  Similarity=0.343  Sum_probs=58.6

Q ss_pred             CEEEEECC--------CCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCEEECCCHHHHHHHH
Q ss_conf             39999819--------9934999999998559923999857994689999999399995449974713045076797674
Q 002682          426 RVILYTRL--------GCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE  497 (893)
Q Consensus       426 kIvIYTks--------gCp~CkrAK~lL~~~GI~YeeIDId~d~e~reELkk~sG~~TVPqIFInGe~IGG~DeL~eL~e  497 (893)
                      .|++|.+.        .||||++++.+|..+|++|+.+.|+... ..+++.++++...||++..||..+..-..+.+..+
T Consensus         2 ~i~l~~ka~~dg~~~~~cPf~~rv~~~L~~kgi~~~~~~v~~~~-~~~~~~~~nP~~~vPvL~~~~~~i~eS~~I~~YLe   80 (86)
T d1k0ma2           2 QVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKR-RTETVQKLCPGGELPFLLYGTEVHTDTNKIEEFLE   80 (86)
T ss_dssp             CEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECTTS-CCHHHHHHCTTCCSSEEEETTEEEECHHHHHHHHH
T ss_pred             CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC-CCHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHH
T ss_conf             58999713799572888872999999999979995788733122-41788987116961599982654556999999999

>d1ljra2 c.47.1.5 (A:1-79) Class theta GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class theta GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=1.7e-05  Score=49.44  Aligned_cols=71  Identities=15%  Similarity=0.173  Sum_probs=59.8

Q ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC--HHHHHHHHHHHCCCCCCEEEECCEEECCCHHHHHHHH
Q ss_conf             9999819993499999999855992399985799--4689999999399995449974713045076797674
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE  497 (893)
Q Consensus       427 IvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d--~e~reELkk~sG~~TVPqIFInGe~IGG~DeL~eL~e  497 (893)
                      +++|..+.||+|++++.+|..+|++|+.+.|+..  .....++.+.+....+|++..+|..+.....+.....
T Consensus         3 m~LY~~~~sp~~r~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~np~g~vP~L~d~~~~l~ES~aI~~yL~   75 (79)
T d1ljra2           3 LELFLDLVSQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQINSLGKLPTLKDGDFILTESSAILIYLS   75 (79)
T ss_dssp             CEEEECTTSHHHHHHHHHHHHTTCCCEEEECCTTTTGGGSHHHHTTCTTCCSCEEEETTEEEECHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCEEEEEECCCEEECHHHHHHHHH
T ss_conf             9996089985799999999990999889960013223699999976554312589739929976899999999

>d1aw9a2 c.47.1.5 (A:2-82) Class phi GST {Maize (Zea mays), type III [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Maize (Zea mays), type III [TaxId: 4577]

Probab=97.91  E-value=4.4e-06  Score=53.12  Aligned_cols=72  Identities=11%  Similarity=0.095  Sum_probs=60.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC--HHHHHHHHHHHCCCCCCEEEECCEEECCCHHHHHHHH
Q ss_conf             39999819993499999999855992399985799--4689999999399995449974713045076797674
Q 002682          426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE  497 (893)
Q Consensus       426 kIvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d--~e~reELkk~sG~~TVPqIFInGe~IGG~DeL~eL~e  497 (893)
                      ++++|..+.||+|.+++.+|..+|++|+.+.|+..  .....++.++++..+||++..+|..+.....+.+...
T Consensus         2 pm~Ly~~~~sp~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~aI~~YL~   75 (81)
T d1aw9a2           2 PLKLYGMPLSPNVVRVATVLNEKGLDFEIVPVDLTTGAHKQPDFLALNPFGQIPALVDGDEVLFESRAINRYIA   75 (81)
T ss_dssp             CEEEESCTTCHHHHHHHHHHHHTTCCEEEECCCSSTTSSCCCSGGGTCTTCCSCEEEETTEEEESHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCEEEEEEECCCEEECHHHHHHHHH
T ss_conf             89999479993599999999966999789996577751225999887643705799989909977999999999

>d1axda2 c.47.1.5 (A:1-80) Class phi GST {Maize (Zea mays), type I [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Maize (Zea mays), type I [TaxId: 4577]

Probab=97.86  E-value=2e-05  Score=49.06  Aligned_cols=72  Identities=11%  Similarity=-0.015  Sum_probs=60.1

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC--HHHHHHHHHHHCCCCCCEEEECCEEECCCHHHHHHHH
Q ss_conf             39999819993499999999855992399985799--4689999999399995449974713045076797674
Q 002682          426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE  497 (893)
Q Consensus       426 kIvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d--~e~reELkk~sG~~TVPqIFInGe~IGG~DeL~eL~e  497 (893)
                      .+++|+.+.|++|.+++.+|+++|++|+.+.|+..  .....++.+++....||++..||..+.....+.....
T Consensus         2 p~~Ly~~~~S~~~~kv~~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~   75 (80)
T d1axda2           2 PMKLYGAVMSWNLTRCATALEEAGSDYEIVPINFATAEHKSPEHLVRNPFGQVPALQDGDLYLFESRAICKYAA   75 (80)
T ss_dssp             CEEEESCTTCTTHHHHHHHHHHHTCCEEEECCCTTTTGGGSHHHHTTCTTCCSCEEEETTEEEESHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCEEEECCEEEECHHHHHHHHH
T ss_conf             89999789996899999999981999889996687651106999986302668889989989987999999999

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.86  E-value=4.1e-06  Score=53.31  Aligned_cols=58  Identities=17%  Similarity=0.132  Sum_probs=46.3

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC------CCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCEE
Q ss_conf             7739999819993499999999855------9923999857994689999999399995449974713
Q 002682          424 KGRVILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEIL  485 (893)
Q Consensus       424 kgkIvIYTksgCp~CkrAK~lL~~~------GI~YeeIDId~d~e~reELkk~sG~~TVPqIFInGe~  485 (893)
                      .-+|++|+.+|||+|++++..|++.      .+.+..+|++.+++    +....|...+|+++++|+.
T Consensus         2 ~v~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~----l~~~~~V~~~Pt~~~~~~~   65 (85)
T d1nhoa_           2 VVNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDRE----KAIEYGLMAVPAIAINGVV   65 (85)
T ss_dssp             CCCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGG----GGGGTCSSCSSEEEETTTE
T ss_pred             EEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH----HHHHCCCEEECEEEECCCE
T ss_conf             899999999998326879999844032231001011334432643----6875491582989999858

>d1r5aa2 c.47.1.5 (A:2-86) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]

Probab=97.85  E-value=3.8e-05  Score=47.31  Aligned_cols=70  Identities=10%  Similarity=0.079  Sum_probs=59.4

Q ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC--HHHHHHHHHHHCCCCCCEEEECCEEECCCHHHHHHH
Q ss_conf             9999819993499999999855992399985799--468999999939999544997471304507679767
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD  496 (893)
Q Consensus       427 IvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d--~e~reELkk~sG~~TVPqIFInGe~IGG~DeL~eL~  496 (893)
                      +++|..+.||+|++++.+|+.+|++|+.+.|+..  .....++.+++...+||.+..||..+.....+....
T Consensus         2 ~iLY~~~~S~~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL   73 (85)
T d1r5aa2           2 TVLYYLPASPPCRSVLLLAKMIGVELDLKVLNIMEGEQLKPDFVELNPQHCIPTMDDHGLVLWESRVILSYL   73 (85)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTCTTCCSSEEEETTEEEECHHHHHHHH
T ss_pred             EEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCEEEECCCCEECHHHHHHHH
T ss_conf             799838998759999999998099988999668886527999998876589878898661222699999999

>d1fw1a2 c.47.1.5 (A:5-87) Class zeta GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class zeta GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=6.3e-05  Score=45.95  Aligned_cols=71  Identities=20%  Similarity=0.255  Sum_probs=58.9

Q ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC----HHHHHHHHHHHCCCCCCEEEECCEEECCCHHHHHHHH
Q ss_conf             9999819993499999999855992399985799----4689999999399995449974713045076797674
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVY----PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE  497 (893)
Q Consensus       427 IvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d----~e~reELkk~sG~~TVPqIFInGe~IGG~DeL~eL~e  497 (893)
                      -++|+-+.|++|.+++.+|..+|++|+.+.|+..    .....++.+++...+||.+..+|..+.....+.+..+
T Consensus         2 piLY~~~~S~~s~rvr~~L~ekgi~~e~~~v~l~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~i~eS~aI~~yL~   76 (83)
T d1fw1a2           2 PILYSYFRSSCSWRVRIALALKGIDYKTVPINLIKDGGQQFSKDFQALNPMKQVPTLKIDGITIHQSLAIIEYLE   76 (83)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHTTCCCEEEECCSSTTSCGGGSHHHHHHCTTCCSCEEEETTEEEESHHHHHHHHH
T ss_pred             CEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCEEEECHHHHHHHHH
T ss_conf             999868998489999999999199978996134445544389899876447725889989998746999999999

>d1jlva2 c.47.1.5 (A:1-84) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]

Probab=97.77  E-value=6.1e-05  Score=46.05  Aligned_cols=70  Identities=13%  Similarity=0.052  Sum_probs=57.3

Q ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC--HHHHHHHHHHHCCCCCCEEEECCEEECCCHHHHHHH
Q ss_conf             9999819993499999999855992399985799--468999999939999544997471304507679767
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD  496 (893)
Q Consensus       427 IvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d--~e~reELkk~sG~~TVPqIFInGe~IGG~DeL~eL~  496 (893)
                      +.+|..++||+|++++.+|..+|++|+.+.|+..  .....++.+++...+||++..+|..+-....+.+..
T Consensus         1 mkLY~~~~S~~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~d~~~~l~ES~aI~~yL   72 (84)
T d1jlva2           1 MDFYYLPGSAPCRAVQMTAAAVGVELNLKLTNLMAGEHMKPEFLKINPQHCIPTLVDNGFALWESRAICTYL   72 (84)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHCTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCEEEECCEEEECHHHHHHHH
T ss_conf             989738999779999999998099988999668777647899999852556887998999888599999999

>d1gnwa2 c.47.1.5 (A:2-85) Class phi GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.76  E-value=2.3e-05  Score=48.65  Aligned_cols=70  Identities=11%  Similarity=0.101  Sum_probs=56.9

Q ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC--HHHHHHHHHHHCCCCCCEEEECCEEECCCHHHHHHH
Q ss_conf             9999819993499999999855992399985799--468999999939999544997471304507679767
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD  496 (893)
Q Consensus       427 IvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d--~e~reELkk~sG~~TVPqIFInGe~IGG~DeL~eL~  496 (893)
                      +.+|+.+.||+|.+++.+|..+|++|+.+.|+..  ....+++.+++...+||.+..+|..+.....+.+..
T Consensus         2 ~kLY~~~~s~~~~~v~~~l~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL   73 (84)
T d1gnwa2           2 IKVFGHPASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFEDGDLKLFESRAITQYI   73 (84)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSTTGGGTCTTCCSCEEEETTEEEECHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHCCCCEEEEECCCEEECHHHHHHHH
T ss_conf             699967998679999999998599967632567765101899998753286218988991881689999999

>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Regulatory protein Spx
species: Bacillus subtilis [TaxId: 1423]

Probab=97.48  E-value=0.0001  Score=44.59  Aligned_cols=47  Identities=30%  Similarity=0.397  Sum_probs=41.2

Q ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCC
Q ss_conf             99998199934999999998559923999857994689999999399
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGS  473 (893)
Q Consensus       427 IvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d~e~reELkk~sG~  473 (893)
                      |++|+.+.|..|++|++||+++|++|+.+|+..++--..++......
T Consensus         2 i~ly~~~~C~~~rka~~~L~~~~i~~~~~d~~~~p~s~~eL~~ll~~   48 (114)
T d1z3ea1           2 VTLYTSPSCTSCRKARAWLEEHEIPFVERNIFSEPLSIDEIKQILRM   48 (114)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHTTCCEEEEETTTSCCCHHHHHHHHHT
T ss_pred             EEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf             79986999879999999999879984998610258998999999887

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.48  E-value=0.00017  Score=43.28  Aligned_cols=58  Identities=16%  Similarity=0.110  Sum_probs=42.1

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHC----------CCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEE--CCEEEC
Q ss_conf             39999819993499999999855----------992399985799468999999939999544997--471304
Q 002682          426 RVILYTRLGCQESREVRLFLYWK----------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMG  487 (893)
Q Consensus       426 kIvIYTksgCp~CkrAK~lL~~~----------GI~YeeIDId~d~e~reELkk~sG~~TVPqIFI--nGe~IG  487 (893)
                      .|++|+.+|||+|++++..+.+.          .|.+..+|++..++    +.+..+...+|++++  +|+.++
T Consensus        18 ~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~----l~~~~~V~~vPTi~i~~~G~~~~   87 (107)
T d1a8la2          18 RILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPE----WADQYNVMAVPKIVIQVNGEDRV   87 (107)
T ss_dssp             EEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHH----HHHHTTCCSSCEEEEEETTEEEE
T ss_pred             EEEEEECCCCCCCHHHCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC----CCCCCCCCCCEEEEEEECCEEEE
T ss_conf             99999958664135648268764334331457839999851542212----21124541000899996993988

>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Hypothetical protein PA3664 (YffB)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.22  E-value=0.00012  Score=44.18  Aligned_cols=46  Identities=15%  Similarity=0.293  Sum_probs=37.9

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf             3999981999349999999985599239998579946899999993
Q 002682          426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA  471 (893)
Q Consensus       426 kIvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d~e~reELkk~s  471 (893)
                      .++||+.+.|..|++|++||+++|++|+.+|+..++--..++....
T Consensus         1 t~~iY~~p~Cs~srka~~~L~~~~i~~~~idy~k~pls~~eL~~ll   46 (114)
T d1rw1a_           1 TYVLYGIKACDTMKKARTWLDEHKVAYDFHDYKAVGIDREHLRRWC   46 (114)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHTTCCEEEEEHHHHCCCHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf             9899988998689999999997699769997125699999999998

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.20  E-value=0.00052  Score=40.26  Aligned_cols=57  Identities=11%  Similarity=0.259  Sum_probs=44.1

Q ss_pred             EEEEECCCCHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEE--CCEEEC
Q ss_conf             9999819993499999999855-----992399985799468999999939999544997--471304
Q 002682          427 VILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMG  487 (893)
Q Consensus       427 IvIYTksgCp~CkrAK~lL~~~-----GI~YeeIDId~d~e~reELkk~sG~~TVPqIFI--nGe~IG  487 (893)
                      |+.|+.+||+.|++.+..|.+.     ++.|..+|++..++    +.+..|..++|++.+  +|+.+.
T Consensus        30 vv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~----l~~~~~V~~~Pt~~~~~~G~~v~   93 (113)
T d1r26a_          30 VAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSE----IVSKCRVLQLPTFIIARSGKMLG   93 (113)
T ss_dssp             EEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             EEEEECCCCCCCHHHCEECCCCCCCCCCCCCCCCCCCCCHH----HHHHCCCCCCCEEEEEECCEEEE
T ss_conf             99998898765300010001111111111110001233345----69975215787899998998999

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=97.04  E-value=0.0016  Score=37.29  Aligned_cols=59  Identities=19%  Similarity=0.309  Sum_probs=44.8

Q ss_pred             EEEEECCCCHHHHHHHHHHHHC------CCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEE--CCEEECCC
Q ss_conf             9999819993499999999855------992399985799468999999939999544997--47130450
Q 002682          427 VILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGL  489 (893)
Q Consensus       427 IvIYTksgCp~CkrAK~lL~~~------GI~YeeIDId~d~e~reELkk~sG~~TVPqIFI--nGe~IGG~  489 (893)
                      ++.|..+||++|+++...|.+.      .+.+..+|++.+++    +....+...+|++++  +|+.++-+
T Consensus        24 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~----l~~~~~I~~~Pt~~~~~~g~~v~~~   90 (108)
T d1thxa_          24 LVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPT----TVKKYKVEGVPALRLVKGEQILDST   90 (108)
T ss_dssp             EEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHH----HHHHTTCCSSSEEEEEETTEEEEEE
T ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHCCCCCEECEECCCCCHH----HHHHHCCCCCCEEEEEECCEEEEEE
T ss_conf             999987998875410067789998617863000002453088----9998502689879999999998999

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.04  E-value=0.00013  Score=44.01  Aligned_cols=60  Identities=20%  Similarity=0.260  Sum_probs=42.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHH----CC--CCEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCE--EECCC
Q ss_conf             3999981999349999999985----59--92399985799468999999939999544997471--30450
Q 002682          426 RVILYTRLGCQESREVRLFLYW----KR--LRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEI--LMGGL  489 (893)
Q Consensus       426 kIvIYTksgCp~CkrAK~lL~~----~G--I~YeeIDId~d~e~reELkk~sG~~TVPqIFInGe--~IGG~  489 (893)
                      .|++|+.+||++|+.....+.+    .+  +.+..++++.+++.    ....|...+|++++++.  ++|..
T Consensus         5 ~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~l----a~~~~V~~~Pt~~i~~~g~~~G~~   72 (85)
T d1fo5a_           5 KIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQK----AMEYGIMAVPTIVINGDVEFIGAP   72 (85)
T ss_dssp             EEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCT----TTSTTTCCSSEEEETTEEECCSSS
T ss_pred             EEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCEEEEEEEEECCCEEECCC
T ss_conf             99999879981727664422122211100001111011001133----336871485099997791998789

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=96.94  E-value=0.003  Score=35.60  Aligned_cols=59  Identities=15%  Similarity=0.350  Sum_probs=43.4

Q ss_pred             EEEEECCCCHHHHHHHHHHHHC------CCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEE--CCEEECCC
Q ss_conf             9999819993499999999855------992399985799468999999939999544997--47130450
Q 002682          427 VILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGL  489 (893)
Q Consensus       427 IvIYTksgCp~CkrAK~lL~~~------GI~YeeIDId~d~e~reELkk~sG~~TVPqIFI--nGe~IGG~  489 (893)
                      |+.|..+||++|+..+..|++.      .+.|..+|++..++    +.+..+...+|++++  +|+.+..+
T Consensus        28 vv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~----l~~~~~v~~~Pt~~~~~~G~~v~~~   94 (112)
T d1ep7a_          28 VVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAA----VAEAAGITAMPTFHVYKDGVKADDL   94 (112)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHH----HHHHHTCCBSSEEEEEETTEEEEEE
T ss_pred             EEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCC----CCCCCCCCCCCEEEEEECCEEEEEE
T ss_conf             999985875787524222355541246268998730234442----1001510678989999999999999

>d2a2ra2 c.47.1.5 (A:1-77) Class pi GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class pi GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.002  Score=36.64  Aligned_cols=71  Identities=10%  Similarity=-0.049  Sum_probs=57.8

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCEEECCCHHHHHHH
Q ss_conf             39999819993499999999855992399985799468999999939999544997471304507679767
Q 002682          426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD  496 (893)
Q Consensus       426 kIvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d~e~reELkk~sG~~TVPqIFInGe~IGG~DeL~eL~  496 (893)
                      ++++|.-+.++.|..++.+|...|++|+.+.|+.................+|++..+|..+.....+.+..
T Consensus         2 ~~~L~yf~~~g~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~p~g~vP~L~~~g~~i~eS~aI~~yL   72 (77)
T d2a2ra2           2 PYTVVYFPVRGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASCLYGQLPKFQDGDLTLYQSNTILRHL   72 (77)
T ss_dssp             SEEEEECSSSGGGHHHHHHHHHTTCCEEEEECCHHHHHHSHHHHHSTTSCSCEEEETTEEEECHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCEEEECHHHHHHHH
T ss_conf             87999728945589999999986997379996320033300123587888888997997563699999999

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.88  E-value=0.0036  Score=35.04  Aligned_cols=59  Identities=15%  Similarity=0.218  Sum_probs=42.5

Q ss_pred             EEEEECCCCHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHCCCCCCEEE--ECCEEECCC
Q ss_conf             9999819993499999999855-----99239998579946899999993999954499--747130450
Q 002682          427 VILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVF--FNEILMGGL  489 (893)
Q Consensus       427 IvIYTksgCp~CkrAK~lL~~~-----GI~YeeIDId~d~e~reELkk~sG~~TVPqIF--InGe~IGG~  489 (893)
                      ++.|..+||+.|++....|.+.     ++.|..+|++..++    +....+...+|+++  -+|+.++.+
T Consensus        32 lv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~~~~~~----l~~~~~V~~~Pt~~~~~~G~~v~~~   97 (114)
T d1xfla_          32 VVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKS----VASDWAIQAMPTFMFLKEGKILDKV   97 (114)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHH----HHHHTTCCSSSEEEEEETTEEEEEE
T ss_pred             EEEEECCCCCCCCCCCCCHHHHCCCCCCCCEEEEEEEECEE----ECCCCCEEEEEEEEEEECCEEEEEE
T ss_conf             99998688788643330001101345665204787410100----1000554115799999899999999

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.86  E-value=0.0012  Score=38.02  Aligned_cols=57  Identities=19%  Similarity=0.230  Sum_probs=44.4

Q ss_pred             CCCCEEEEECCCCHHHHH----HHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCEEE
Q ss_conf             977399998199934999----9999985599239998579946899999993999954499747130
Q 002682          423 MKGRVILYTRLGCQESRE----VRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILM  486 (893)
Q Consensus       423 MkgkIvIYTksgCp~Ckr----AK~lL~~~GI~YeeIDId~d~e~reELkk~sG~~TVPqIFInGe~I  486 (893)
                      |. +|.|++ ++|+.|.+    +++.+.+.|+..+...|..    ..++.+ +|..++|.+.|||+.+
T Consensus         1 Mm-~IkVlg-~gC~~C~~~~~~v~~a~~e~gi~a~v~kv~d----~~ei~~-ygVmstPalvIdg~vv   61 (77)
T d1iloa_           1 MM-KIQIYG-TGCANCQMLEKNAREAVKELGIDAEFEKIKE----MDQILE-AGLTALPGLAVDGELK   61 (77)
T ss_dssp             CE-EEEEEC-SSSSTTHHHHHHHHHHHHHTTCCEEEEEECS----HHHHHH-HTCSSSSCEEETTEEE
T ss_pred             CC-EEEEEC-CCCCCHHHHHHHHHHHHHHCCCCEEEEEECC----HHHHHH-CCCCCCCEEEECCEEE
T ss_conf             95-799968-9995378999999999997599559998079----999987-5976788799999999

>d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Arsenate reductase ArsC
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.00053  Score=40.23  Aligned_cols=46  Identities=20%  Similarity=0.196  Sum_probs=38.9

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf             3999981999349999999985599239998579946899999993
Q 002682          426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA  471 (893)
Q Consensus       426 kIvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d~e~reELkk~s  471 (893)
                      .|+||..+.|.-|++|.+||++.|++|+.+|+..++--..++..+.
T Consensus         1 ni~iY~~p~Cs~srkal~~L~~~~i~~~~idy~k~pls~~eL~~ll   46 (138)
T d1j9ba_           1 NITIYHNPACGTSRNTLEMIRNSGTEPTIILYLENPPSRDELVKLI   46 (138)
T ss_dssp             CCEEECCTTCHHHHHHHHHHHHTTCCCEEECTTTSCCCHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf             9599989999889999999997799759986215799999999999

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.72  E-value=0.0075  Score=33.08  Aligned_cols=59  Identities=10%  Similarity=0.223  Sum_probs=44.7

Q ss_pred             EEEEECCCCHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHCCCCCCEEE--ECCEEECCC
Q ss_conf             9999819993499999999855-----99239998579946899999993999954499--747130450
Q 002682          427 VILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVF--FNEILMGGL  489 (893)
Q Consensus       427 IvIYTksgCp~CkrAK~lL~~~-----GI~YeeIDId~d~e~reELkk~sG~~TVPqIF--InGe~IGG~  489 (893)
                      |+.|+.+||+.|+.....|++.     ++.|..+|++..++    +.+..+...+|++.  .+|+.++.+
T Consensus        22 vv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~vd~d~~~~----~~~~~~V~~~Pt~i~~k~G~~v~~~   87 (103)
T d1syra_          22 IVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSE----VTEKENITSMPTFKVYKNGSSVDTL   87 (103)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHH----HHHHTTCCSSSEEEEEETTEEEEEE
T ss_pred             EEEEECCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCCCCC----EEEEEEEECCEEEEEEECCEEEEEE
T ss_conf             99996786047511130000112203204888611246753----0002235056089999999999999

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.61  E-value=0.0063  Score=33.57  Aligned_cols=35  Identities=9%  Similarity=0.078  Sum_probs=23.0

Q ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHC---CCCEEEEE
Q ss_conf             997739999819993499999999855---99239998
Q 002682          422 VMKGRVILYTRLGCQESREVRLFLYWK---RLRYVEIN  456 (893)
Q Consensus       422 ~MkgkIvIYTksgCp~CkrAK~lL~~~---GI~YeeID  456 (893)
                      ..+..|++|+=..||||+++...+...   ++.+..+.
T Consensus        25 ~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~~~~~~~~~   62 (156)
T d1eeja1          25 QEKHVITVFTDITCGYCHKLHEQMADYNALGITVRYLA   62 (156)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEE
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             88779999858998789988777787632476289996

>d2cvda2 c.47.1.5 (A:2-75) Class sigma GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.0061  Score=33.63  Aligned_cols=70  Identities=9%  Similarity=0.026  Sum_probs=57.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCEEECCCHHHHHHHH
Q ss_conf             399998199934999999998559923999857994689999999399995449974713045076797674
Q 002682          426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE  497 (893)
Q Consensus       426 kIvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d~e~reELkk~sG~~TVPqIFInGe~IGG~DeL~eL~e  497 (893)
                      ++++|.-+.++.|..++.+|...|++|+++.++..  ...+..+.+....||.+..||..+..-..+.+...
T Consensus         2 ~~kL~yf~~~~~~~~vRl~L~~~gi~~e~~~~~~~--~~~~~~~~~p~g~vP~L~~~g~~l~qS~AI~~yLa   71 (74)
T d2cvda2           2 NYKLTYFNMRGRAEIIRYIFAYLDIQYEDHRIEQA--DWPEIKSTLPFGKIPILEVDGLTLHQSLAIARYLT   71 (74)
T ss_dssp             CEEEEEESSSGGGHHHHHHHHHTTCCCEEEEECGG--GHHHHHTTSTTSCSCEEEETTEEEECHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCCEECCCCCC--CCHHHCCCCCCCCCCEEEECCEEEECHHHHHHHHC
T ss_conf             68999718947799999999984999772111000--11122024889986879889979986999999974

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.59  E-value=0.0026  Score=35.99  Aligned_cols=62  Identities=15%  Similarity=0.086  Sum_probs=43.8

Q ss_pred             CEEEEECCCCHHHHHHHHHHHH----CCCCEEEEECCCCH--HHHHHHHHHHCCCCCCEEEE--CCEEEC
Q ss_conf             3999981999349999999985----59923999857994--68999999939999544997--471304
Q 002682          426 RVILYTRLGCQESREVRLFLYW----KRLRYVEINIDVYP--SRKMELEKFAGSSAVPKVFF--NEILMG  487 (893)
Q Consensus       426 kIvIYTksgCp~CkrAK~lL~~----~GI~YeeIDId~d~--e~reELkk~sG~~TVPqIFI--nGe~IG  487 (893)
                      -+++|+++|||+|++....|.+    .+.....++++...  +....+.+..+..++|++++  +|+.+.
T Consensus        29 ~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~~PTli~~~~gk~~~   98 (115)
T d1zmaa1          29 ATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHITDGQINV   98 (115)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEEETTEEEE
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEE
T ss_conf             9999929998327879999899999854323221010002320023211001225652799998998999

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.0079  Score=32.97  Aligned_cols=60  Identities=17%  Similarity=0.281  Sum_probs=44.0

Q ss_pred             EEEEECCCCHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHCCCCCCEE--EECCEEECCCH
Q ss_conf             9999819993499999999855-----9923999857994689999999399995449--97471304507
Q 002682          427 VILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKV--FFNEILMGGLS  490 (893)
Q Consensus       427 IvIYTksgCp~CkrAK~lL~~~-----GI~YeeIDId~d~e~reELkk~sG~~TVPqI--FInGe~IGG~D  490 (893)
                      |+.|..+||+.|++....|.+.     ++.|..+|++..++    +....+...+|++  |-+|+.++.+.
T Consensus        25 vv~F~a~wC~~Ck~~~p~~~~la~~~~~~~f~~vd~d~~~~----l~~~~~v~~~Pt~~~~~~G~~v~~~~   91 (107)
T d1gh2a_          25 VVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQG----TAATNNISATPTFQFFRNKVRIDQYQ   91 (107)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHH----HHHHTTCCSSSEEEEEETTEEEEEEE
T ss_pred             EEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHH----HHHHCCCEECEEEEEEECCEEEEEEE
T ss_conf             99998898778643133220012322100222344432433----46652814432899999998999995

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.0066  Score=33.45  Aligned_cols=59  Identities=14%  Similarity=0.315  Sum_probs=43.8

Q ss_pred             EEEEECCCCHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEE--CCEEECCC
Q ss_conf             9999819993499999999855-----992399985799468999999939999544997--47130450
Q 002682          427 VILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGL  489 (893)
Q Consensus       427 IvIYTksgCp~CkrAK~lL~~~-----GI~YeeIDId~d~e~reELkk~sG~~TVPqIFI--nGe~IGG~  489 (893)
                      |+.|+.+||+.|+.+...|.+.     ++.|..+|++..++    +....+...+|++.+  ||+.++.+
T Consensus        24 vv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~d~~~~----~~~~~~V~~~Pt~~~~~~G~~v~~~   89 (105)
T d2ifqa1          24 VVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQD----VASECEVKCMPTFQFFKKGQKVGEF   89 (105)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHTTCCBSSEEEEEETTEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCHH----HHHHCCCEEEEEEEEEECCEEEEEE
T ss_conf             99998587564034444432201101110046514425876----8988195599999999999998899

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=96.48  E-value=0.0085  Score=32.77  Aligned_cols=58  Identities=16%  Similarity=0.227  Sum_probs=42.0

Q ss_pred             EEEEECCCCHHHHHHHHHHHHC------CCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEE--CCEEECC
Q ss_conf             9999819993499999999855------992399985799468999999939999544997--4713045
Q 002682          427 VILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGG  488 (893)
Q Consensus       427 IvIYTksgCp~CkrAK~lL~~~------GI~YeeIDId~d~e~reELkk~sG~~TVPqIFI--nGe~IGG  488 (893)
                      ++.|..+||++|++....+.+.      .+.+..+|++..++    +.+..+...+|++++  +|+.++-
T Consensus        23 lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~----l~~~~~V~~~Pt~~~~~~G~~v~~   88 (107)
T d1dbya_          23 LVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPN----VASEYGIRSIPTIMVFKGGKKCET   88 (107)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHHTCCSSCEEEEESSSSEEEE
T ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHH----HHHHHCCCCEEEEEEEECCEEEEE
T ss_conf             999989987775446718888877643440699996666566----798813462679999987808889

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.41  E-value=0.013  Score=31.66  Aligned_cols=59  Identities=14%  Similarity=0.201  Sum_probs=40.7

Q ss_pred             EEEEECCCCHHHHHHHHHHHHC----C--CCEEEEECCCCHHHHHHHHHHHCCCCCCEEEE--CCEEECCC
Q ss_conf             9999819993499999999855----9--92399985799468999999939999544997--47130450
Q 002682          427 VILYTRLGCQESREVRLFLYWK----R--LRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGL  489 (893)
Q Consensus       427 IvIYTksgCp~CkrAK~lL~~~----G--I~YeeIDId~d~e~reELkk~sG~~TVPqIFI--nGe~IGG~  489 (893)
                      ++.|..+||+.|++.+..|.+.    .  +.+..++++..++    +.+..+...+|++++  +|+.+..+
T Consensus        29 lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~----l~~~~~V~~~Pt~~~~~~G~~v~~~   95 (111)
T d1xwaa_          29 VLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECED----IAMEYNISSMPTFVFLKNGVKVEEF   95 (111)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEEEEE
T ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEECCCC----HHHCCCCCCCCEEEEEECCEEEEEE
T ss_conf             999997865685000145798864115524799998503701----2221777535089999899799999

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=96.34  E-value=0.0067  Score=33.40  Aligned_cols=59  Identities=12%  Similarity=0.219  Sum_probs=41.5

Q ss_pred             EEEEECCCCHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHCCCCCCEEE--ECCEEECCC
Q ss_conf             9999819993499999999855-----99239998579946899999993999954499--747130450
Q 002682          427 VILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVF--FNEILMGGL  489 (893)
Q Consensus       427 IvIYTksgCp~CkrAK~lL~~~-----GI~YeeIDId~d~e~reELkk~sG~~TVPqIF--InGe~IGG~  489 (893)
                      |+.|..+||+.|+.....|++.     ++.+..+|++..++    +....+...+|++.  -||+.++.+
T Consensus        30 vv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~----l~~~~~I~~~Pt~~~~k~G~~v~~~   95 (113)
T d1ti3a_          30 VVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKA----VAEEWNVEAMPTFIFLKDGKLVDKT   95 (113)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHH----HHHHHHCSSTTEEEEEETTEEEEEE
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCC----CCCCCEECCCCEEEEEECCEEEEEE
T ss_conf             99998486466223324554320037984387654202565----3226723243659999999999998

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.0096  Score=32.43  Aligned_cols=58  Identities=17%  Similarity=0.248  Sum_probs=40.6

Q ss_pred             EEEEECCCCHHHHHHHHHHHH----CC--CCEEEEECCCCHHHHHHHHHHHCCCCCCEEEE--CCEEECC
Q ss_conf             999981999349999999985----59--92399985799468999999939999544997--4713045
Q 002682          427 VILYTRLGCQESREVRLFLYW----KR--LRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGG  488 (893)
Q Consensus       427 IvIYTksgCp~CkrAK~lL~~----~G--I~YeeIDId~d~e~reELkk~sG~~TVPqIFI--nGe~IGG  488 (893)
                      ++.|+.+||++|+.....+.+    .+  +.+..+|++.++.    +....+...+|++++  +|+.++-
T Consensus        24 ~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~----l~~~~~v~~~PT~~~~~~G~~v~~   89 (108)
T d2trxa_          24 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG----TAPKYGIRGIPTLLLFKNGEVAAT   89 (108)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTT----HHHHTTCCSSSEEEEEETTEEEEE
T ss_pred             EEEEECCCCCCCCCCCCHHHHHHHHHHCCEEEEECCCCCHHH----HHHHHCCCCEEEEEEEECCEEEEE
T ss_conf             999978988775334807999999841226665135632154----798838871779999889979789

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=96.26  E-value=0.012  Score=31.77  Aligned_cols=59  Identities=14%  Similarity=0.215  Sum_probs=41.6

Q ss_pred             EEEEECCCCHHHHHHHHHHHHC------CCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEE--CCEEECCC
Q ss_conf             9999819993499999999855------992399985799468999999939999544997--47130450
Q 002682          427 VILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGL  489 (893)
Q Consensus       427 IvIYTksgCp~CkrAK~lL~~~------GI~YeeIDId~d~e~reELkk~sG~~TVPqIFI--nGe~IGG~  489 (893)
                      ++.|..+||++|++....+.+.      .+.+..++++.+++    +-...+...+|++++  +|+.++.+
T Consensus        21 lv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~----l~~~~~V~~~Pt~~~~~~G~~v~~~   87 (104)
T d1fb6a_          21 MVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG----IATQYNIRSIPTVLFFKNGERKESI   87 (104)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEEEEE
T ss_pred             EEEEECCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCHH----HHHHCCEEEEEEEEEEECCEEEEEE
T ss_conf             999986864776535833688877603765305895145554----5541465254578999757489998

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.0036  Score=35.05  Aligned_cols=56  Identities=18%  Similarity=0.115  Sum_probs=43.1

Q ss_pred             EEEEECCCCHHHHHHHHHHHHC------CCCEEEEECCCCHHHHHHHHHHHCCCCCCEE--EECCEEE
Q ss_conf             9999819993499999999855------9923999857994689999999399995449--9747130
Q 002682          427 VILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKV--FFNEILM  486 (893)
Q Consensus       427 IvIYTksgCp~CkrAK~lL~~~------GI~YeeIDId~d~e~reELkk~sG~~TVPqI--FInGe~I  486 (893)
                      |+.|+.+||+.|++....|.+.      .+.|..+|++..++    +....+...+|++  |.+|+.+
T Consensus        26 vv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~----la~~~~I~~~PT~~~f~~g~~i   89 (137)
T d1qgva_          26 VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPD----FNKMYELYDPCTVMFFFRNKHI   89 (137)
T ss_dssp             EEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCT----TTTSSCSCSSCEEEEEETTEEE
T ss_pred             EEEEECCCCCCCHHCCHHHHHHHHHHHCCCEEEEEECCCCCH----HHHHCCEEEEEEEEEEECCCEE
T ss_conf             999979977552010848999998750100578864333510----0434574257899999689589

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=96.14  E-value=0.018  Score=30.73  Aligned_cols=59  Identities=14%  Similarity=0.156  Sum_probs=41.5

Q ss_pred             EEEEECCCCHHHHHHHHHHHH-----CCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEE--CCEEECC
Q ss_conf             999981999349999999985-----5992399985799468999999939999544997--4713045
Q 002682          427 VILYTRLGCQESREVRLFLYW-----KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGG  488 (893)
Q Consensus       427 IvIYTksgCp~CkrAK~lL~~-----~GI~YeeIDId~d~e~reELkk~sG~~TVPqIFI--nGe~IGG  488 (893)
                      |+.|..+||++|+.....|.+     .++.+..+|++..   ..++....+...+|++.+  +|+.+..
T Consensus        29 vv~f~a~wC~~C~~~~p~~~~l~~~~~~v~~~~vd~~~~---~~~l~~~~~V~~~Pt~~~~k~G~~v~~   94 (112)
T d1f9ma_          29 VLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQE---NKTLAKELGIRVVPTFKILKENSVVGE   94 (112)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSST---THHHHHHHCCSSSSEEEEEETTEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCC---CHHHHHHEEECCCCEEEEEECCEEEEE
T ss_conf             999976999636899877755213333210000223432---465675434056878999999999999

>d1okta2 c.47.1.5 (A:1-85) Pf GST {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Pf GST
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.11  E-value=0.02  Score=30.39  Aligned_cols=74  Identities=15%  Similarity=0.231  Sum_probs=55.3

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHH---HH--HHHHCCCCCCEEEECCEEECCCHHHHHHH
Q ss_conf             9773999981999349999999985599239998579946899---99--99939999544997471304507679767
Q 002682          423 MKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKM---EL--EKFAGSSAVPKVFFNEILMGGLSELKALD  496 (893)
Q Consensus       423 MkgkIvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d~e~re---EL--kk~sG~~TVPqIFInGe~IGG~DeL~eL~  496 (893)
                      |..+|++|.-+..+.|..++-+|...|++|+.+.++.+.....   ..  ...+....+|.+..+|..+..-..+....
T Consensus         1 M~~~i~L~Y~~~~gr~e~irl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~~p~g~lP~l~~~g~~l~eS~AI~~yL   79 (85)
T d1okta2           1 MGDNIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGVNGDAFVEFKNFKKEKDTPFEQVPILQIGDLILAQSQAIVRYL   79 (85)
T ss_dssp             CCCCEEEEEESSSTTTHHHHHHHHHHTCCCEEEEETSSSCHHHHHHHHHHHSCCSSSCSCEEEETTEEEECHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECCCCEEECHHHHHHHH
T ss_conf             9997399986995266999999998399853789723421002233332111244788785206898783099999999

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.90  E-value=0.022  Score=30.23  Aligned_cols=56  Identities=11%  Similarity=0.066  Sum_probs=41.4

Q ss_pred             CEEEEECCCCHHHHHHHHHHHH-------CCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEE--CCEE
Q ss_conf             3999981999349999999985-------5992399985799468999999939999544997--4713
Q 002682          426 RVILYTRLGCQESREVRLFLYW-------KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEIL  485 (893)
Q Consensus       426 kIvIYTksgCp~CkrAK~lL~~-------~GI~YeeIDId~d~e~reELkk~sG~~TVPqIFI--nGe~  485 (893)
                      -++.|..+||++|++....+..       .++.+..+|++.+.+    +-...+...+|++++  +|+.
T Consensus        30 ~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pti~~f~~g~~   94 (119)
T d2b5ea4          30 VLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQD----LCMEHNIPGFPSLKIFKNSDV   94 (119)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTCT
T ss_pred             EEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCHHH----HHHHHCCCCCCEEEEEECCEE
T ss_conf             99999778667643221344332222212110466530224488----888753456986999999988

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=95.66  E-value=0.024  Score=29.92  Aligned_cols=59  Identities=14%  Similarity=0.186  Sum_probs=44.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHC------CCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEE--CCEEECC
Q ss_conf             39999819993499999999855------992399985799468999999939999544997--4713045
Q 002682          426 RVILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGG  488 (893)
Q Consensus       426 kIvIYTksgCp~CkrAK~lL~~~------GI~YeeIDId~d~e~reELkk~sG~~TVPqIFI--nGe~IGG  488 (893)
                      -|+.|..+||+.|+.....|...      .+.+..+|++..+..    ....+...+|++++  +|+.++-
T Consensus        20 vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~----~~~~~V~~~Pt~~~~~~G~~~~~   86 (105)
T d1nw2a_          20 VLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET----TSQFGIMSIPTLILFKGGEPVKQ   86 (105)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHH----HHHTTCCBSSEEEEEETTEEEEE
T ss_pred             EEEEEECCCCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCC----HHHCCCCEEEEEEEEECCEEEEE
T ss_conf             99999778988853114000100342389269999979887154----88879643107999989989889

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.61  E-value=0.011  Score=32.19  Aligned_cols=23  Identities=13%  Similarity=0.149  Sum_probs=18.6

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHC
Q ss_conf             39999819993499999999855
Q 002682          426 RVILYTRLGCQESREVRLFLYWK  448 (893)
Q Consensus       426 kIvIYTksgCp~CkrAK~lL~~~  448 (893)
                      .|++|+=..||||+++...+..+
T Consensus        29 ~I~~FsD~~CPyC~~~~~~l~~l   51 (150)
T d1t3ba1          29 VVTVFMDITCHYCHLLHQQLKEY   51 (150)
T ss_dssp             EEEEEECTTCHHHHHHHTTHHHH
T ss_pred             EEEEEECCCCHHHHHHHHHHHHH
T ss_conf             99999789987899886778877

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=95.38  E-value=0.035  Score=28.94  Aligned_cols=55  Identities=13%  Similarity=0.249  Sum_probs=40.1

Q ss_pred             EEEEECCCCHHHHHHHHHHH-------H-CCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             99998199934999999998-------5-5992399985799468999999939999544997
Q 002682          427 VILYTRLGCQESREVRLFLY-------W-KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF  481 (893)
Q Consensus       427 IvIYTksgCp~CkrAK~lL~-------~-~GI~YeeIDId~d~e~reELkk~sG~~TVPqIFI  481 (893)
                      ++.|..+||++|+.....+.       . .++.+..+++..+.+...++.+..+...+|++++
T Consensus        26 lv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~   88 (117)
T d2fwha1          26 MLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPTILF   88 (117)
T ss_dssp             EEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCSSSEEEE
T ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHEHHHCEEEEE
T ss_conf             999862567764333166886799998516647775023322167888876635654408999

>d1gula2 c.47.1.5 (A:4-80) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Human (Homo sapiens), (a1-1) [TaxId: 9606]

Probab=95.20  E-value=0.016  Score=31.06  Aligned_cols=70  Identities=13%  Similarity=-0.009  Sum_probs=51.7

Q ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHH-HHHHHHHCCCCCCEEEECCEEECCCHHHHHHH
Q ss_conf             99998199934999999998559923999857994689-99999939999544997471304507679767
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRK-MELEKFAGSSAVPKVFFNEILMGGLSELKALD  496 (893)
Q Consensus       427 IvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d~e~r-eELkk~sG~~TVPqIFInGe~IGG~DeL~eL~  496 (893)
                      .++|.-+..+.|.+++.+|...|++|+.+.++...... ..........++|++..||..+.....+....
T Consensus         2 pkL~yf~~~g~~~~vR~~L~~~gi~ye~~~~~~~~~~~~~~~~~~~p~g~lPvL~~~g~~l~eS~AI~~yL   72 (77)
T d1gula2           2 PKLHYPNGRGRMESVRWVLAAAGVEFDEEFLETKEQLYKLQDGNHLLFQQVPMVEIDGMKLVQTRSILHYI   72 (77)
T ss_dssp             CEEEEESSCTTTHHHHHHHHHTTCCCEEEEECSHHHHHHHHHTTCSTTSCSCEEEETTEEEESHHHHHHHH
T ss_pred             CEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCEEEECCEEEECHHHHHHHH
T ss_conf             89998499615899999999839985378602300000133323388887998888877530599999999

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.036  Score=28.87  Aligned_cols=58  Identities=12%  Similarity=0.093  Sum_probs=39.9

Q ss_pred             CCCHHHHHHHHHHHHC------CCCEEEEECCCCHHHH---HHHHHHHCCCCCCEEEE--CCEEECCCH
Q ss_conf             9993499999999855------9923999857994689---99999939999544997--471304507
Q 002682          433 LGCQESREVRLFLYWK------RLRYVEINIDVYPSRK---MELEKFAGSSAVPKVFF--NEILMGGLS  490 (893)
Q Consensus       433 sgCp~CkrAK~lL~~~------GI~YeeIDId~d~e~r---eELkk~sG~~TVPqIFI--nGe~IGG~D  490 (893)
                      +|||.|+++.-.+.+.      ++.|..+||+..++..   ..+....+...+|++.+  +|+.+.+.+
T Consensus        38 sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~~~~V~~iPT~i~~~~g~~l~~~~  106 (119)
T d1woua_          38 SWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQKLVESE  106 (119)
T ss_dssp             BSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHCCCSSSEEEETTSSCEEEGGG
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHCCEEEEEEEEEEECCEEEEEEE
T ss_conf             987539999999999997547861999998878721004544578867858888999998996972004

>d1tu7a2 c.47.1.5 (A:1-77) Class pi GST {Onchocerca volvulus [TaxId: 6282]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class pi GST
species: Onchocerca volvulus [TaxId: 6282]

Probab=95.04  E-value=0.023  Score=30.10  Aligned_cols=70  Identities=11%  Similarity=0.031  Sum_probs=55.2

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCEEECCCHHHHHHH
Q ss_conf             97739999819993499999999855992399985799468999999939999544997471304507679767
Q 002682          423 MKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD  496 (893)
Q Consensus       423 MkgkIvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d~e~reELkk~sG~~TVPqIFInGe~IGG~DeL~eL~  496 (893)
                      |.  +++|.-+..+.|..++-+|...|++|+++.++...  ..+.++..+...+|++..+|..+..-..+....
T Consensus         1 M~--~kL~Yf~~~g~~e~iRl~L~~~gi~~e~~~~~~~~--~~~~~~~~p~g~lPvL~~~~~~l~qS~AI~~YL   70 (77)
T d1tu7a2           1 MS--YKLTYFSIRGLAEPIRLFLVDQDIKFIDDRIAKDD--FSSIKSQFQFGQLPCLYDGDQQIVQSGAILRHL   70 (77)
T ss_dssp             CC--EEEEEESSSGGGHHHHHHHHHTTCCCEEEEECGGG--STTTGGGSTTSCSCEEEETTEEEESHHHHHHHH
T ss_pred             CC--EEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCC--CHHHCCCCCCCCCCEEEECCEEEECHHHHHHHH
T ss_conf             96--69996088387899999999839983265145322--322103688889989998887897599999999

>d2gsqa2 c.47.1.5 (A:1-75) Class sigma GST {Squid (Ommastrephes sloani pacificus) [TaxId: 6634]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Squid (Ommastrephes sloani pacificus) [TaxId: 6634]

Probab=94.96  E-value=0.039  Score=28.65  Aligned_cols=69  Identities=12%  Similarity=-0.026  Sum_probs=56.1

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCEEECCCHHHHHHH
Q ss_conf             39999819993499999999855992399985799468999999939999544997471304507679767
Q 002682          426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD  496 (893)
Q Consensus       426 kIvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d~e~reELkk~sG~~TVPqIFInGe~IGG~DeL~eL~  496 (893)
                      +.++|.-+.-+.|..+|-+|...|++|+.+.++.+.  ..+.++......+|.+.+||..|.....+.+..
T Consensus         2 ~~~L~yf~~~g~~~~iRl~L~~~gi~ye~~~~~~~~--~~~~~~~~p~g~lPvL~~~g~~i~eS~aI~~yL   70 (75)
T d2gsqa2           2 KYTLHYFPLMGRAELCRFVLAAHGEEFTDRVVEMAD--WPNLKATMYSNAMPVLDIDGTKMSQSMCIARHL   70 (75)
T ss_dssp             CEEEEECSSSGGGHHHHHHHHHTTCCCEEEECCTTT--HHHHGGGSGGGSSCEEEETTEEECCHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCCHHHCCCCCC--CHHHHHCCCCCCCCEEEECCEEEECHHHHHHHH
T ss_conf             779996699436899999999859981021033212--244420233688677987980110699999999

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.026  Score=29.74  Aligned_cols=78  Identities=12%  Similarity=0.169  Sum_probs=46.2

Q ss_pred             EEEEECCCCHHHHHHHHHHHH----C-----CCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEE--CCEEECCCHHHHHH
Q ss_conf             999981999349999999985----5-----992399985799468999999939999544997--47130450767976
Q 002682          427 VILYTRLGCQESREVRLFLYW----K-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGLSELKAL  495 (893)
Q Consensus       427 IvIYTksgCp~CkrAK~lL~~----~-----GI~YeeIDId~d~e~reELkk~sG~~TVPqIFI--nGe~IGG~DeL~eL  495 (893)
                      ++.|..+||++|++....+..    .     .+.+..+|++....    +....+...+|++++  +|+.+....    .
T Consensus        28 lV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~~~~~G~~~~~~~----~   99 (120)
T d1meka_          28 LVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESD----LAQQYGVRGYPTIKFFRNGDTASPKE----Y   99 (120)
T ss_dssp             EEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCS----SHHHHTCCSSSEEEEEESSCSSSCEE----C
T ss_pred             EEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCHH----HHHHHCCCCCCEEEEEECCEEEEEEE----E
T ss_conf             999989986876433024332101111355420341034652415----79980984687599998996950079----6


Q ss_pred             HHCCCCHHHHHHHHHCC
Q ss_conf             74496169999987239
Q 002682          496 DESGKLDEKIEYLITEA  512 (893)
Q Consensus       496 ~esGeL~~lLk~~~~~a  512 (893)
                      ...-..+.+++.+.+..
T Consensus       100 ~g~~~~~~l~~fi~~~~  116 (120)
T d1meka_         100 TAGREADDIVNWLKKRT  116 (120)
T ss_dssp             CCCSSHHHHHHHHHTTS
T ss_pred             CCCCCHHHHHHHHHHHH
T ss_conf             17899999999999836

>d1m0ua2 c.47.1.5 (A:47-122) Class sigma GST {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.65  E-value=0.045  Score=28.26  Aligned_cols=69  Identities=7%  Similarity=0.017  Sum_probs=55.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCEEECCCHHHHHHH
Q ss_conf             39999819993499999999855992399985799468999999939999544997471304507679767
Q 002682          426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD  496 (893)
Q Consensus       426 kIvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d~e~reELkk~sG~~TVPqIFInGe~IGG~DeL~eL~  496 (893)
                      ...+|.-+..+.|..+|-+|...|++|+.+.++..  ...+.++......+|.+.+||..+..-..+....
T Consensus         3 s~kL~Yf~~~g~~e~iRl~L~~~gi~yed~~~~~~--~~~~~~~~~p~g~lP~l~~~g~~l~qS~aI~~YL   71 (76)
T d1m0ua2           3 SYTLFYFNVKALAEPLRYLFAYGNQEYEDVRVTRD--EWPALKPTMPMGQMPVLEVDGKRVHQSISMARFL   71 (76)
T ss_dssp             CEEEEEESSSGGGHHHHHHHHHHTCCCEEEEECTT--THHHHGGGSGGGCSCEEEETTEEEECHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCCEEECCCHH--HHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHH
T ss_conf             37999669856899999999975999788248955--5223202586788767988980200599999999

>d1tw9a2 c.47.1.5 (A:1-77) Class sigma GST {Heligmosomoides polygyrus [TaxId: 6339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Heligmosomoides polygyrus [TaxId: 6339]

Probab=94.34  E-value=0.072  Score=26.99  Aligned_cols=69  Identities=10%  Similarity=0.020  Sum_probs=53.1

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCEEECCCHHHHHHH
Q ss_conf             39999819993499999999855992399985799468999999939999544997471304507679767
Q 002682          426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD  496 (893)
Q Consensus       426 kIvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d~e~reELkk~sG~~TVPqIFInGe~IGG~DeL~eL~  496 (893)
                      ..+++--+.=+.|..+|-+|...|++|+++.+..  +...+.+.......+|.+.+||..+..-..+.+..
T Consensus         3 ~~kL~Yf~~~gr~e~vR~~L~~~gi~ye~~~~~~--~~~~~~~~~~p~g~lPvL~~~g~~i~qS~AI~~yL   71 (77)
T d1tw9a2           3 HYKLTYFNGRGAGECARQVFALADQKYEDVRLTQ--ETFVPLKATFPFGQVPVLEVDGQQLAQSQAICRYL   71 (77)
T ss_dssp             CEEEEEESSSGGGHHHHHHHHHTTCCCEEEEECH--HHHGGGGGGSTTSCSCEEEETTEEEECHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCC--CCCHHHHHHCCCCCCCEEEECCEEEECHHHHHHHH
T ss_conf             8689978984689999999998599923221200--00112232112688888998999998599999999

>d1b48a2 c.47.1.5 (A:2-79) Class alpha GST {Mouse (Mus musculus), (a1-4) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Mouse (Mus musculus), (a1-4) [TaxId: 10090]

Probab=94.31  E-value=0.014  Score=31.38  Aligned_cols=72  Identities=15%  Similarity=0.142  Sum_probs=53.5

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHH-HHHHHHHHCCCCCCEEEECCEEECCCHHHHHHH
Q ss_conf             739999819993499999999855992399985799468-999999939999544997471304507679767
Q 002682          425 GRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSR-KMELEKFAGSSAVPKVFFNEILMGGLSELKALD  496 (893)
Q Consensus       425 gkIvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d~e~-reELkk~sG~~TVPqIFInGe~IGG~DeL~eL~  496 (893)
                      .|.++|.-+..+.|..++.+|...|++|+.+.++..... ............+|.+..||..+...-.+....
T Consensus         2 ~K~kL~yf~~~~~~~~vR~~L~~~gi~ye~~~~~~~~~~~~~~~~~~~p~g~lPvL~~~g~~l~eS~AI~rYL   74 (78)
T d1b48a2           2 AKPKLYYFNGRGRMESIRWLLAAAGVEFEEEFLETREQYEKMQKDGHLLFGQVPLVEIDGMMLTQTRAILSYL   74 (78)
T ss_dssp             CCCEEEBCSSCTTTHHHHHHHHHHTCCCCCCBCCCHHHHHHHHTTTCSSSSCSCEEEETTEEECCHHHHHHHH
T ss_pred             CCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHCCHHHCCCCCCCCCCEEEECCEEEECHHHHHHHH
T ss_conf             9848997499667999999999849972799974401000101021144897788886992898789999999

>d1n2aa2 c.47.1.5 (A:1-80) Class beta GST {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Escherichia coli [TaxId: 562]

Probab=94.10  E-value=0.012  Score=31.88  Aligned_cols=68  Identities=12%  Similarity=0.146  Sum_probs=50.1

Q ss_pred             EEECCCCHHHHHHHHHHHHCCCCEEEEECCCCH---HHHHHHHHHHCCCCCCEEEEC-CEEECCCHHHHHHHH
Q ss_conf             998199934999999998559923999857994---689999999399995449974-713045076797674
Q 002682          429 LYTRLGCQESREVRLFLYWKRLRYVEINIDVYP---SRKMELEKFAGSSAVPKVFFN-EILMGGLSELKALDE  497 (893)
Q Consensus       429 IYTksgCp~CkrAK~lL~~~GI~YeeIDId~d~---e~reELkk~sG~~TVPqIFIn-Ge~IGG~DeL~eL~e  497 (893)
                      +|..++.+ +.+++.+|.++|++|+.+.|+...   ...+++.+++....||++..+ |..+.....+.+...
T Consensus         3 LY~~p~s~-s~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~dg~~l~ES~aI~~yL~   74 (80)
T d1n2aa2           3 LFYKPGAC-SLASHITLRESGKDFTLVSVDLMKKRLENGDDYFAVNPKGQVPALLLDDGTLLTEGVAIMQYLA   74 (80)
T ss_dssp             EEECTTST-THHHHHHHHHTTCCCEEEEEETTTTEETTCCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHHH
T ss_pred             EEECCCCC-HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHCCCCEEEEEECCCCEECCHHHHHHHHH
T ss_conf             87279953-9999999998099988999728988553889999870355410688369888748999999999

>d1nhya2 c.47.1.5 (A:1-75) GST-like domain of elongation factor 1-gamma {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: GST-like domain of elongation factor 1-gamma
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.06  E-value=0.085  Score=26.57  Aligned_cols=69  Identities=12%  Similarity=0.029  Sum_probs=53.4

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEC-CEEECCCHHHHHHH
Q ss_conf             977399998199934999999998559923999857994689999999399995449974-71304507679767
Q 002682          423 MKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFN-EILMGGLSELKALD  496 (893)
Q Consensus       423 MkgkIvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d~e~reELkk~sG~~TVPqIFIn-Ge~IGG~DeL~eL~  496 (893)
                      |. ++++|+.+.| .+..++.++...+++|+.++..   ...+++.+++....||++..+ |..+-....+....
T Consensus         1 Ms-~~tLY~~~~~-rs~~~~~~l~~~~~d~~~~~~~---~~~~~~~~~nP~gkVP~L~~~~g~~l~ES~aI~~YL   70 (75)
T d1nhya2           1 MS-QGTLYANFRI-RTWVPRGLVKALKLDVKVVTPD---AAAEQFARDFPLKKVPAFVGPKGYKLTEAMAINYYL   70 (75)
T ss_dssp             CT-TCEEECCSSH-HHHHHHHHHHHHTCCCEEECGG---GCHHHHHHHCTTCCSSEEECGGGCEEESHHHHHHHH
T ss_pred             CC-CEEEECCCCC-HHHHHHHHHHHCCCCCCCCCCC---CCCHHHHHHCCCCCCCEEEECCEEEECCHHHHHHHH
T ss_conf             99-8588438981-3999999997368633556856---499889986969899858858825760899999999

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.68  E-value=0.068  Score=27.18  Aligned_cols=52  Identities=8%  Similarity=0.001  Sum_probs=35.7

Q ss_pred             EEEEECCCCHHHHHHHH----------HHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             99998199934999999----------99855992399985799468999999939999544997
Q 002682          427 VILYTRLGCQESREVRL----------FLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF  481 (893)
Q Consensus       427 IvIYTksgCp~CkrAK~----------lL~~~GI~YeeIDId~d~e~reELkk~sG~~TVPqIFI  481 (893)
                      ++.++.+||++|++..+          +++.   .|..+.|+.+.+....+.+.++...+|.++|
T Consensus        46 lV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~---~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~~  107 (147)
T d2dlxa1          46 MINIQNVQDFACQCLNRDVWSNEAVKNIIRE---HFIFWQVYHDSEEGQRYIQFYKLGDFPYVSI  107 (147)
T ss_dssp             EEEEECSCTTTHHHHHHHTTTCHHHHHHHHH---TEEEEEEESSSHHHHHHHHHHTCCSSSEEEE
T ss_pred             EEEEECCCCCCHHHHHHHCCCCHHHHHHHHH---HEEEEEECCCCHHHHHHHHHEECCCEEEEEE
T ss_conf             9999517887269998752378999999752---4567651111013565655000376148999

>d1f2ea2 c.47.1.5 (A:1-80) Class beta GST {Sphingomonas paucimobilis [TaxId: 13689]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Sphingomonas paucimobilis [TaxId: 13689]

Probab=93.63  E-value=0.032  Score=29.18  Aligned_cols=68  Identities=12%  Similarity=0.103  Sum_probs=49.4

Q ss_pred             EEECCCCHHHHHHHHHHHHCCCCEEEEECCCC--H-HHHHHHHHHHCCCCCCEEEE-CCEEECCCHHHHHHHH
Q ss_conf             99819993499999999855992399985799--4-68999999939999544997-4713045076797674
Q 002682          429 LYTRLGCQESREVRLFLYWKRLRYVEINIDVY--P-SRKMELEKFAGSSAVPKVFF-NEILMGGLSELKALDE  497 (893)
Q Consensus       429 IYTksgCp~CkrAK~lL~~~GI~YeeIDId~d--~-e~reELkk~sG~~TVPqIFI-nGe~IGG~DeL~eL~e  497 (893)
                      +|..++.+ +.+++-+|..+|++|+.+.|+..  . ...+++.+++...+||++.. ||..+.....+.+...
T Consensus         3 LY~~p~s~-s~~v~~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~d~g~~l~ES~aI~~yL~   74 (80)
T d1f2ea2           3 LFISPGAC-SLAPHIALRETGADFEAVKVDLAVRKTEAGEDFLTVNPSGKVPALTLDSGETLTENPAILLYIA   74 (80)
T ss_dssp             EEECTTST-THHHHHHHHHHTCCCEEEEEETTTTEETTSCBHHHHCTTCCSCEEECTTSCEEESHHHHHHHHH
T ss_pred             EECCCCCH-HHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEECCCEEEECHHHHHHHHH
T ss_conf             86489954-9999999998199988999864788553889999870135442699789848704999999999

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=93.63  E-value=0.16  Score=24.82  Aligned_cols=25  Identities=8%  Similarity=0.052  Sum_probs=18.5

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHH
Q ss_conf             9773999981999349999999985
Q 002682          423 MKGRVILYTRLGCQESREVRLFLYW  447 (893)
Q Consensus       423 MkgkIvIYTksgCp~CkrAK~lL~~  447 (893)
                      -+..|+.|+-..||||.+....+..
T Consensus        18 ~~~~Ivef~d~~Cp~C~~~~~~~~~   42 (181)
T d1beda_          18 SSPVVSEFFSFYCPHCNTFEPIIAQ   42 (181)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCCHHHHHHHHH
T ss_conf             9988999988899465656530266

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.10  E-value=0.2  Score=24.30  Aligned_cols=22  Identities=14%  Similarity=0.065  Sum_probs=17.6

Q ss_pred             CEEEEECCCCHHHHHHHHHHHH
Q ss_conf             3999981999349999999985
Q 002682          426 RVILYTRLGCQESREVRLFLYW  447 (893)
Q Consensus       426 kIvIYTksgCp~CkrAK~lL~~  447 (893)
                      .|++|+-..||||.+....+..
T Consensus        27 ~I~ef~d~~Cp~C~~~~~~~~~   48 (172)
T d1z6ma1          27 KMIEFINVRCPYCRKWFEESEE   48 (172)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHH
T ss_pred             EEEEEECCCCHHHHHHHHHHHH
T ss_conf             9999988998748999998754

>d1pmta2 c.47.1.5 (A:1-80) Class beta GST {Proteus mirabilis [TaxId: 584]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Proteus mirabilis [TaxId: 584]

Probab=93.02  E-value=0.029  Score=29.48  Aligned_cols=70  Identities=14%  Similarity=0.111  Sum_probs=50.0

Q ss_pred             EEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC--HHH-HHHHHHHHCCCCCCEEEEC-CEEECCCHHHHHHHHC
Q ss_conf             999819993499999999855992399985799--468-9999999399995449974-7130450767976744
Q 002682          428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSR-KMELEKFAGSSAVPKVFFN-EILMGGLSELKALDES  498 (893)
Q Consensus       428 vIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d--~e~-reELkk~sG~~TVPqIFIn-Ge~IGG~DeL~eL~es  498 (893)
                      .+|..++- .|.+++.+|..+|++|+.+.|+..  ... ..++.+++...+||++.++ |..+..-..+.....+
T Consensus         2 kLY~~p~s-~s~~vr~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~ES~aI~~yL~~   75 (80)
T d1pmta2           2 KLYYTPGS-CSLSPHIVLRETGLDFSIERIDLRTKKTESGKDFLAINPKGQVPVLQLDNGDILTEGVAIVQYLAD   75 (80)
T ss_dssp             EEEECTTS-TTHHHHHHHHHTTCCCEEEEEETTTTEETTSCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHHHT
T ss_pred             EEEECCCC-HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHCCCCCCCCEECCCCCEEECHHHHHHHHHH
T ss_conf             88707997-199999999991999889998547885548799998644666884662898477479999999998

>d1k3ya2 c.47.1.5 (A:2-80) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Human (Homo sapiens), (a1-1) [TaxId: 9606]

Probab=92.74  E-value=0.16  Score=24.78  Aligned_cols=70  Identities=13%  Similarity=-0.035  Sum_probs=52.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH--HCCCCCCEEEECCEEECCCHHHHHHH
Q ss_conf             399998199934999999998559923999857994689999999--39999544997471304507679767
Q 002682          426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKF--AGSSAVPKVFFNEILMGGLSELKALD  496 (893)
Q Consensus       426 kIvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d~e~reELkk~--sG~~TVPqIFInGe~IGG~DeL~eL~  496 (893)
                      |.++|.-+.-+.|..++-+|...|++|+++.+..... .......  +....+|++.+||..+..-..+++..
T Consensus         3 k~kL~Yf~~~grae~irl~L~~~gv~yed~~~~~~~~-~~~~~~~~~~p~g~lPvl~~~g~~l~qS~AI~~YL   74 (79)
T d1k3ya2           3 KPKLHYFNARGRMESTRWLLAAAGVEFEEKFIKSAED-LDKLRNDGYLMFQQVPMVEIDGMKLVQTRAILNYI   74 (79)
T ss_dssp             CCEEEEESSSTTTHHHHHHHHHHTCCCEEEEECSHHH-HHHHHHTTCCTTSCSCEEEETTEEEESHHHHHHHH
T ss_pred             CCEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCHHH-HHHHCCCCCCCCCCCCEEEECCEEEECHHHHHHHH
T ss_conf             8699974995788999999998499846887223124-43302133588788888997994898399999999

>d2c4ja2 c.47.1.5 (A:2-85) Class mu GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class mu GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.64  E-value=0.086  Score=26.52  Aligned_cols=71  Identities=10%  Similarity=-0.019  Sum_probs=51.4

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHH--------HHHHHHHHCCCCCCEEEECCEEECCCHHHHHHH
Q ss_conf             39999819993499999999855992399985799468--------999999939999544997471304507679767
Q 002682          426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSR--------KMELEKFAGSSAVPKVFFNEILMGGLSELKALD  496 (893)
Q Consensus       426 kIvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d~e~--------reELkk~sG~~TVPqIFInGe~IGG~DeL~eL~  496 (893)
                      ++++|--+..+.|..++-+|...|++|+.+.++.....        ..+.+..+....+|.+..+|..+..-..++...
T Consensus         1 P~~L~Y~~~~g~~~~vR~~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lP~L~~~g~~l~eS~AIl~YL   79 (84)
T d2c4ja2           1 PMTLGYWNIRGLAHSIRLLLEYTDSSYEEKKYTMGDAPDYDRSQWLNEKFKLGLDFPNLPYLIDGTHKITQSNAILRYI   79 (84)
T ss_dssp             CEEEEEESSSGGGHHHHHHHHHTTCCEEEEEECCCCTTTTCCHHHHTTTTSSCCSSCCSSEEEETTEEEESHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCEEEECHHHHHHHH
T ss_conf             9799987983554999999998399855899735422234567776665304698999998887997885599999999

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.58  E-value=0.17  Score=24.62  Aligned_cols=57  Identities=12%  Similarity=0.187  Sum_probs=36.8

Q ss_pred             CEEEEECCCCHHHHHH------HHHH-------HHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEE--CCEEE
Q ss_conf             3999981999349999------9999-------855992399985799468999999939999544997--47130
Q 002682          426 RVILYTRLGCQESREV------RLFL-------YWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILM  486 (893)
Q Consensus       426 kIvIYTksgCp~CkrA------K~lL-------~~~GI~YeeIDId~d~e~reELkk~sG~~TVPqIFI--nGe~I  486 (893)
                      -+++|..+||++|..+      ...+       ...+|.+..+|++.+..    +-...+...+|+|++  +|+.+
T Consensus        31 ~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~----l~~~~~I~~yPTi~~f~~g~~~  102 (124)
T d1a8ya1          31 LALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAA----VAKKLGLTEEDSIYVFKEDEVI  102 (124)
T ss_dssp             EEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHH----HHHTTTCCSTTCEEEEESSSEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCC----HHHCCCCCCCCCEEEECCCCCE
T ss_conf             99999779862254511889999999999987056875999987404532----0000345457837886167527

>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Atu2684-like
domain: Hypothetical protein Atu2684
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.40  E-value=0.24  Score=23.71  Aligned_cols=77  Identities=16%  Similarity=0.220  Sum_probs=44.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHC----CCCEEEEECC-------CCH----H---HHHHHHHHHCCC--CCCEEEECCE-
Q ss_conf             39999819993499999999855----9923999857-------994----6---899999993999--9544997471-
Q 002682          426 RVILYTRLGCQESREVRLFLYWK----RLRYVEINID-------VYP----S---RKMELEKFAGSS--AVPKVFFNEI-  484 (893)
Q Consensus       426 kIvIYTksgCp~CkrAK~lL~~~----GI~YeeIDId-------~d~----e---~reELkk~sG~~--TVPqIFInGe-  484 (893)
                      =|.+||..||+.|-.|-++|.++    .|---.+.|+       .|+    .   ++..+....|.+  ..||++|||. 
T Consensus         8 VVElFTSqgCssCPpAd~~L~~L~~~~~Vi~La~HVdYWd~lGw~D~fa~~~~t~RQ~~Y~~~~g~~~vyTPq~vvnG~~   87 (225)
T d2axoa1           8 VVELFTSQGCASCPPADEALRKMIQKGDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQAILNGRD   87 (225)
T ss_dssp             EEEEEECTTCTTCHHHHHHHHHHHHHTSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEEEETTTE
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf             89984379999978899999986178988999960660003587788878125589999998609887772148980721


Q ss_pred             EECCCHHHHHHHHCCCCHHHHHHHH
Q ss_conf             3045076797674496169999987
Q 002682          485 LMGGLSELKALDESGKLDEKIEYLI  509 (893)
Q Consensus       485 ~IGG~DeL~eL~esGeL~~lLk~~~  509 (893)
                      ...|.+.       ..+...+....
T Consensus        88 ~~~gs~~-------~~~~~~i~~~~  105 (225)
T d2axoa1          88 HVKGADV-------RGIYDRLDAFK  105 (225)
T ss_dssp             EEETTCH-------HHHHHHHHHHH
T ss_pred             CCCCCCH-------HHHHHHHHHHH
T ss_conf             2363488-------89999999876

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.40  E-value=0.017  Score=30.93  Aligned_cols=57  Identities=12%  Similarity=0.121  Sum_probs=35.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf             39999819993499999999855-----99239998579946899999993999954499747
Q 002682          426 RVILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNE  483 (893)
Q Consensus       426 kIvIYTksgCp~CkrAK~lL~~~-----GI~YeeIDId~d~e~reELkk~sG~~TVPqIFInG  483 (893)
                      .+++|+.+|||.|.+..-.|...     ++.+..++++.+++....... .+...+|.+++.+
T Consensus        57 ~~l~~~~tWC~~C~~~~P~l~~l~~~~~~~~~~~i~~d~~~~~~~~~~~-~~~~~~p~~~~~d  118 (166)
T d1z6na1          57 RLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLA-LERIAIPLVLVLD  118 (166)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTTT-CSSCCSSEEEEEC
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH-HCCCCCCCEEECC
T ss_conf             9999992968528999999999998789981799977668778888877-4155323145537

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.39  E-value=0.059  Score=27.53  Aligned_cols=59  Identities=12%  Similarity=0.088  Sum_probs=38.9

Q ss_pred             EECCCCHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEE--CCEEECCCH
Q ss_conf             9819993499999999855-----992399985799468999999939999544997--471304507
Q 002682          430 YTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGLS  490 (893)
Q Consensus       430 YTksgCp~CkrAK~lL~~~-----GI~YeeIDId~d~e~reELkk~sG~~TVPqIFI--nGe~IGG~D  490 (893)
                      |..+|||.|+...-.|.++     +..+....|+  .+...++.+..|...+|++++  +|+.++.+.
T Consensus        37 f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd--~d~~~~l~~~~~V~~~Pt~~~~~~G~~v~~~~  102 (119)
T d2es7a1          37 SDPRRTPEVSDNPVMIAELLREFPQFDWQVAVAD--LEQSEAIGDRFNVRRFPATLVFTDGKLRGALS  102 (119)
T ss_dssp             CCSCC----CCHHHHHHHHHHTCTTSCCEEEEEC--HHHHHHHHHTTTCCSSSEEEEESCC----CEE
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEE--CCCCHHHHHHCCCCCCEEEEEEECCEEEEEEE
T ss_conf             3599890277898899999986678864999997--99887889751757403799997684877761

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.23  E-value=0.045  Score=28.26  Aligned_cols=55  Identities=9%  Similarity=0.053  Sum_probs=36.4

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHC-------CCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEE--CCE
Q ss_conf             39999819993499999999855-------992399985799468999999939999544997--471
Q 002682          426 RVILYTRLGCQESREVRLFLYWK-------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEI  484 (893)
Q Consensus       426 kIvIYTksgCp~CkrAK~lL~~~-------GI~YeeIDId~d~e~reELkk~sG~~TVPqIFI--nGe  484 (893)
                      -++.|..+||++|++....|.+.       +..+..++++.+...    ....+...+|++++  +|+
T Consensus        33 vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~~~----~~~~~v~~~Ptl~~f~~g~   96 (140)
T d2b5ea1          33 VLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEND----VRGVVIEGYPTIVLYPGGK   96 (140)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCC----CSSCCCSSSSEEEEECCTT
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCHH----CCCCCCCCCCEEEEEECCE
T ss_conf             999998444754302579999999997424553178863223011----0123456688599998997

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=92.05  E-value=0.0054  Score=34.01  Aligned_cols=76  Identities=11%  Similarity=0.046  Sum_probs=47.6

Q ss_pred             EECCCCHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEE--CCEEECCCHHHHHHHHCCCCH
Q ss_conf             9819993499999999855-----992399985799468999999939999544997--471304507679767449616
Q 002682          430 YTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGLSELKALDESGKLD  502 (893)
Q Consensus       430 YTksgCp~CkrAK~lL~~~-----GI~YeeIDId~d~e~reELkk~sG~~TVPqIFI--nGe~IGG~DeL~eL~esGeL~  502 (893)
                      |..+|||.|....-.|.+.     +..+....|+  .+...++....+...+|++.+  ||+.++.+......   .+|.
T Consensus        43 f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd--~d~~~~la~~~~V~~~PT~~~~~~G~~v~~~~G~~~~---~~l~  117 (132)
T d2hfda1          43 SDPKRTPEVSDNPVMIGELLREFPDYTWQVAIAD--LEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPW---AELI  117 (132)
T ss_dssp             SCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEEC--HHHHHHHHHHHTCCSCCEEEEEETTEEEEEECCCSCH---HHHH
T ss_pred             EECCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEE--ECCCHHHHHHHCCCCCEEEEEEECCCEEEEECCCCCH---HHHH
T ss_conf             4278795378899999999987568863169987--0679899976265752069999837476641399999---9999


Q ss_pred             HHHHHHHH
Q ss_conf             99999872
Q 002682          503 EKIEYLIT  510 (893)
Q Consensus       503 ~lLk~~~~  510 (893)
                      .+++.+..
T Consensus       118 ~~i~~ll~  125 (132)
T d2hfda1         118 NLMRGLVE  125 (132)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHHC
T ss_conf             99999858

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.55  E-value=0.066  Score=27.22  Aligned_cols=64  Identities=11%  Similarity=0.111  Sum_probs=43.4

Q ss_pred             EEEEECCCCHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHCCCCCCEE--EECCEEECCCHHHHHH
Q ss_conf             9999819993499999999855-----9923999857994689999999399995449--9747130450767976
Q 002682          427 VILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKV--FFNEILMGGLSELKAL  495 (893)
Q Consensus       427 IvIYTksgCp~CkrAK~lL~~~-----GI~YeeIDId~d~e~reELkk~sG~~TVPqI--FInGe~IGG~DeL~eL  495 (893)
                      |+-|..+||+.|+.+...|..+     .+.|..++.+..+     +....+...+|++  |-||+.++.+-.+..+
T Consensus       124 vvhfy~~~~~~C~~~~~~l~~lA~~~~~vkF~ki~~~~~~-----~~~~~~i~~lPtl~~yk~G~~v~~~vg~~~~  194 (217)
T d2trcp_         124 VVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTG-----AGDRFSSDVLPTLLVYKGGELISNFISVAEQ  194 (217)
T ss_dssp             EEEEECTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHHHHT-----CSTTSCGGGCSEEEEEETTEEEEEETTGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCH-----HHHHCCCCCCCEEEEEECCEEEEEEECCCCC
T ss_conf             9999768988722120448877651245338998145311-----5876799878869999999998999786101

>d1xg8a_ c.47.1.17 (A:) Hypothetical protein SA0798 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: YuzD-like
domain: Hypothetical protein SA0798
species: Staphylococcus aureus [TaxId: 1280]

Probab=90.12  E-value=0.41  Score=22.29  Aligned_cols=73  Identities=16%  Similarity=0.276  Sum_probs=48.9

Q ss_pred             CCEEEEECC-CCHHH------HHHHHHHHH--------CCCCEEEEECCCCHH----HH-HHHHHHH-CCCCCCEEEECC
Q ss_conf             739999819-99349------999999985--------599239998579946----89-9999993-999954499747
Q 002682          425 GRVILYTRL-GCQES------REVRLFLYW--------KRLRYVEINIDVYPS----RK-MELEKFA-GSSAVPKVFFNE  483 (893)
Q Consensus       425 gkIvIYTks-gCp~C------krAK~lL~~--------~GI~YeeIDId~d~e----~r-eELkk~s-G~~TVPqIFInG  483 (893)
                      ..|+||+.. -|+.|      +..-.||+.        ....|+++||...++    .. +...++. .-.-.|.|.+||
T Consensus         8 v~i~VYGA~~iCASCV~aPSSkeTyEWLqaal~RKyp~~~f~~~YiDi~~~~~~~~~~~~~~ae~I~ede~FYPlV~i~~   87 (111)
T d1xg8a_           8 NAVVVYGADVICASCVNAPTSKDIYDWLQPLLKRKYPNISFKYTYIDITKDNDNLTDHDLQFIERIEQDELFYPLITMND   87 (111)
T ss_dssp             EEEEEEECSSCCGGGSSSCCHHHHHHHHHHHHHHHCTTSCEEEEEEETTTC---CCHHHHHHHHHHHTTSSCSSEEEETT
T ss_pred             EEEEEECCCCCCHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf             68999744540454328997241899999998175899852799985358943000889999999862243414899899


Q ss_pred             EEEC-CCHHHHHHHH
Q ss_conf             1304-5076797674
Q 002682          484 ILMG-GLSELKALDE  497 (893)
Q Consensus       484 e~IG-G~DeL~eL~e  497 (893)
                      +.+| |+-.|++..+
T Consensus        88 eiVaEGnp~LK~I~~  102 (111)
T d1xg8a_          88 EYVADGYIQTKQITR  102 (111)
T ss_dssp             EEEEESSCCHHHHHH
T ss_pred             EEEECCCCCHHHHHH
T ss_conf             895168833899999

>d2fnoa2 c.47.1.5 (A:1-87) Hypothetical protein AGR_pAT_752p/Atu5508 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Hypothetical protein AGR pAT 752p/Atu5508
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=89.92  E-value=0.059  Score=27.55  Aligned_cols=70  Identities=13%  Similarity=-0.001  Sum_probs=50.4

Q ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHH--HHHHHHHCCCCCCEEEECC--EEECCCHH
Q ss_conf             79977399998199934999999998559923999857994689--9999993999954499747--13045076
Q 002682          421 LVMKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRK--MELEKFAGSSAVPKVFFNE--ILMGGLSE  491 (893)
Q Consensus       421 ~~MkgkIvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d~e~r--eELkk~sG~~TVPqIFInG--e~IGG~De  491 (893)
                      ..|. .+++|.-+..+.+..++-+|...|++|+.+.++......  .+.++..+...+|.+.+++  ..+.--.-
T Consensus         3 ~~M~-~~~L~Y~~~~g~~e~vRl~L~~~g~~ye~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~g~~~l~qS~A   76 (87)
T d2fnoa2           3 DGMN-TFDLYYWPVPFRGQLIRGILAHCGCSWDEHDVDAIEGLMDCGAEKQPVAFMGPPVLIDRERNFAISQMPA   76 (87)
T ss_dssp             TSCB-SEEEECCSSSSTTHHHHHHHHHTTCCEECCCHHHHHHHHHSCGGGSSSCCSSSCEEEETTTTEEEESHHH
T ss_pred             CCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEEHHHH
T ss_conf             9999-7699978998645999999999738640550411278887520123599889887796499906616999

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.99  E-value=0.67  Score=20.99  Aligned_cols=53  Identities=9%  Similarity=-0.019  Sum_probs=36.1

Q ss_pred             EEEEECCCCHHHHHHHHHHHH-----CCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf             999981999349999999985-----599239998579946899999993999954499
Q 002682          427 VILYTRLGCQESREVRLFLYW-----KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVF  480 (893)
Q Consensus       427 IvIYTksgCp~CkrAK~lL~~-----~GI~YeeIDId~d~e~reELkk~sG~~TVPqIF  480 (893)
                      ++.|..+|||.|++....|.+     .++.+..++.+.+.+......+..+ ..+|.+.
T Consensus        28 ll~F~a~wC~~C~~~~p~l~~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~-~~~p~~~   85 (134)
T d1lu4a_          28 VLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYN-LNFTNLN   85 (134)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHT-CCSEEEE
T ss_pred             EEEEEECCCCCCEECCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCEEE
T ss_conf             998710235775120033788754201222000133342255665554202-3451445

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.10  E-value=0.13  Score=25.47  Aligned_cols=53  Identities=13%  Similarity=0.332  Sum_probs=32.7

Q ss_pred             EEEEECCCCHHHHHHHHHHHH------CCCCEEEEECCCCHHHHHHHHHHH-CCCCCCEEEE
Q ss_conf             999981999349999999985------599239998579946899999993-9999544997
Q 002682          427 VILYTRLGCQESREVRLFLYW------KRLRYVEINIDVYPSRKMELEKFA-GSSAVPKVFF  481 (893)
Q Consensus       427 IvIYTksgCp~CkrAK~lL~~------~GI~YeeIDId~d~e~reELkk~s-G~~TVPqIFI  481 (893)
                      ++.|+.+||++|++....+.+      ....|..++|+.+.+.  ++..+. ....+|++++
T Consensus        29 lv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~--~~~~~~~~~~~~Pt~~~   88 (135)
T d1sena_          29 MVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEP--KDEDFSPDGGYIPRILF   88 (135)
T ss_dssp             EEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSC--SCGGGCTTCSCSSEEEE
T ss_pred             EEEEEECCCCCCEECCHHHHHHHHHHHHCCCCEEEECCCCCCH--HHHHHHHHCCCCEEEEE
T ss_conf             9999726888860560556644999873278289967888687--89998741244205787

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.29  E-value=0.91  Score=20.18  Aligned_cols=33  Identities=6%  Similarity=0.062  Sum_probs=23.7

Q ss_pred             CEEEEECCCCHHHHHHHHHH----HHCCCCEEEEECC
Q ss_conf             39999819993499999999----8559923999857
Q 002682          426 RVILYTRLGCQESREVRLFL----YWKRLRYVEINID  458 (893)
Q Consensus       426 kIvIYTksgCp~CkrAK~lL----~~~GI~YeeIDId  458 (893)
                      .|++|+-+.||||++....+    +...+.+..+++.
T Consensus        39 tv~vF~D~~CP~C~~~~~~l~~l~~~~~v~v~~~~~~   75 (169)
T d1v58a1          39 IVYVFADPFCPYCKQFWQQARPWVDSGKVQLRTLLVG   75 (169)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf             9999889998014899999999874245269997656

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.23  E-value=1  Score=19.91  Aligned_cols=54  Identities=7%  Similarity=-0.033  Sum_probs=35.3

Q ss_pred             EEEEECCCCHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf             9999819993499999999855-----99239998579946899999993999954499
Q 002682          427 VILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVF  480 (893)
Q Consensus       427 IvIYTksgCp~CkrAK~lL~~~-----GI~YeeIDId~d~e~reELkk~sG~~TVPqIF  480 (893)
                      ++.|..+|||.|++....|.+.     ++.+..+................+...+|.++
T Consensus        29 ll~fwa~wC~~C~~~~p~l~~l~~~~~~~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~   87 (134)
T d1zzoa1          29 VLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLA   87 (134)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEE
T ss_pred             EEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEE
T ss_conf             99850341576210111467777640223321111123204677778760775236886

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=81.74  E-value=1.1  Score=19.56  Aligned_cols=86  Identities=10%  Similarity=0.046  Sum_probs=44.6

Q ss_pred             CEEEEECCCCHHHH-----HHHHHHHHC--CCCEEEEECCCCH-HHHHHHHHHHCC--CCCCEEEE--CCEEECCCHHHH
Q ss_conf             39999819993499-----999999855--9923999857994-689999999399--99544997--471304507679
Q 002682          426 RVILYTRLGCQESR-----EVRLFLYWK--RLRYVEINIDVYP-SRKMELEKFAGS--SAVPKVFF--NEILMGGLSELK  493 (893)
Q Consensus       426 kIvIYTksgCp~Ck-----rAK~lL~~~--GI~YeeIDId~d~-e~reELkk~sG~--~TVPqIFI--nGe~IGG~DeL~  493 (893)
                      -++.|..+||++|+     ++-+-+...  .+.+..+|++... ....++....+.  ..+|+|++  +|.....   ..
T Consensus        22 ~lV~Fya~wC~~ck~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~~~~PTi~~f~~g~~~~~---~~   98 (122)
T d2c0ga2          22 SVVKFDIASPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYV---QL   98 (122)
T ss_dssp             EEEEEEESSCCSHHHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTTSCCEEEEESSSSSSEE---EC
T ss_pred             EEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCC---CC
T ss_conf             899998998974248789999999997389749984366555553389999886315689993899869963431---13


Q ss_pred             HHHHCCCCHHHHHHHHHCCCC
Q ss_conf             767449616999998723999
Q 002682          494 ALDESGKLDEKIEYLITEAPP  514 (893)
Q Consensus       494 eL~esGeL~~lLk~~~~~aps  514 (893)
                      .....-..+.+++.+.++.+.
T Consensus        99 ~~~g~rt~~~l~~fv~~~~~~  119 (122)
T d2c0ga2          99 PSHVDVTLDNLKAFVSANTPL  119 (122)
T ss_dssp             CTTSCCCHHHHHHHHHHHSSC
T ss_pred             CCCCCCCHHHHHHHHHHHCCC
T ss_conf             567888999999999983486

>d1fhea2 c.47.1.5 (A:1-80) Class alpha GST {Fasciola hepatica [TaxId: 6192]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Fasciola hepatica [TaxId: 6192]

Probab=81.00  E-value=0.69  Score=20.93  Aligned_cols=69  Identities=14%  Similarity=-0.030  Sum_probs=45.9

Q ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHH--HHCCCCCCEEEECCEEECCCHHHHHH
Q ss_conf             99998199934999999998559923999857994-68999999--93999954499747130450767976
Q 002682          427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP-SRKMELEK--FAGSSAVPKVFFNEILMGGLSELKAL  495 (893)
Q Consensus       427 IvIYTksgCp~CkrAK~lL~~~GI~YeeIDId~d~-e~reELkk--~sG~~TVPqIFInGe~IGG~DeL~eL  495 (893)
                      |+++--+.=..|..++-+|...|++|+.+.++... +.......  ......+|.+..+|..+.....+.+.
T Consensus         2 ~~L~Y~~~rgrae~iRl~L~~~gv~ye~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~g~~l~qS~AI~~y   73 (80)
T d1fhea2           2 AKLGYWKLRGLAQPVRLFLEYLGEEYEEHLYGRDDREKWMSEKFNMGLDLPNLPYYIDDKCKLTQSVAIMRY   73 (80)
T ss_dssp             CEEEEESSCTTTHHHHHHHHHTTCCCEEEEECSTTSHHHHTTTTTSCCSSCCSSEEECSSCEEESTTHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHCCHHHHHCCCCCCCEEEEECCCEEEECHHHHHHH
T ss_conf             399983996077999999998499978999666631010144540459986501443188477578999999