Citrus Sinensis ID: 002697

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-

MATSVAWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKYQV

ccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHcHHHHHHHHHHHHcHHHHccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHcHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHcccc

ccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHccccccccccHHHHccccccccHHccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHccc

matsvawqpqeqGFNEICRLLEqqispsstadkSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTayksmspsnqqyiksellpclgaadrhirsTVGTIVSVVVQLGGIAGWLELLQALVTCldsndinhMEGAMDALSKICedipqvldsdvpglaecpiniflprllqffqsphtslrklslgSVNQFIMLMPSALFVSMDQYLQGLfllsndpsaEVRKLVCAAFNLLIevrpsflephLRNLFEYMLQVnkdtdddvALEACEFWHSYFEAqlphenlkeflPRLVPVLLSnmiyadddeslveaeedeslpdrdqdlkprfhssrlhgsenpedddddivnVWNLRKCSAAALDVLSnvfgdeilptlMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIpllddkfplirsiscwtlsrfSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGfelnqpvyldilmppliakwqqlpnsdkdlfplLECFTSIAQALGAGFTQFAQPVFQRCINIIQTqqlakvdsvaagaqydKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAwvcpelvsphmehfmQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWdqcmsaleppvkdklskyqv

matsvawqpqeQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEedeslpdrdqdlkprfhssrlhgsenpeddddDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSaleppvkdklskyqv

MATSVAWQPQEQGFNEICRLLEQQISPSSTADKSqiwqqlqqysqFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSafatleeeaaeelaprleIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCldllsglaeglgsgieslVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKYQV

*************FNEICRLL*************QIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK*******QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYA******************************************DIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMS***************

***SVAWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLP*****EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQ*PNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLA*V***AAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKYQV

*********QEQGFNEICRLLEQQI***********WQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDES************RDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPV*********

*****AWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSS****************NVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKYQV

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		891	2.2.26 [Sep-21-2011]
Q8H0U4		891	Transportin-1 OS=Arabidop	yes	no	0.997	0.997	0.773	0.0
B8ARW2		890	Transportin-1 OS=Oryza sa	N/A	no	0.997	0.998	0.744	0.0
B9FDR3		891	Transportin-1 OS=Oryza sa	yes	no	0.996	0.996	0.745	0.0
Q8BFY9		898	Transportin-1 OS=Mus musc	yes	no	0.971	0.964	0.45	0.0
Q92973		898	Transportin-1 OS=Homo sap	yes	no	0.971	0.964	0.448	0.0
Q3SYU7		898	Transportin-1 OS=Bos taur	yes	no	0.971	0.964	0.448	0.0
Q99LG2		887	Transportin-2 OS=Mus musc	no	no	0.971	0.976	0.448	0.0
O14787		897	Transportin-2 OS=Homo sap	no	no	0.971	0.965	0.443	0.0
O14089		910	Importin subunit beta-2 O	yes	no	0.956	0.936	0.375	1e-159
Q55CQ7		931	Transportin OS=Dictyostel	yes	no	0.556	0.532	0.444	1e-122

>sp\|Q8H0U4\|TNPO1_ARATH Transportin-1 OS=Arabidopsis thaliana GN=TRN1 PE=1 SV=1	Back alignment and function desciption

 Score = 1429 bits (3699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 688/890 (77%), Positives = 795/890 (89%), Gaps = 1/890 (0%)

Query: 2   ATSVAWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAE 61
           AT+V WQP++ G  EIC LLEQQISPSS  DKSQIW+QLQ +SQFPDFNNYL FIL RAE
Sbjct: 3   ATAVVWQPRDDGLAEICSLLEQQISPSSVVDKSQIWKQLQHFSQFPDFNNYLVFILVRAE 62

Query: 62  GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVV 121
           GKSVE+RQAAGLLLKNNLR AY SM+  NQ+YIKSELLPCLGAADR+IR+TVGTI+SV+V
Sbjct: 63  GKSVEVRQAAGLLLKNNLRGAYPSMTQENQKYIKSELLPCLGAADRNIRTTVGTIISVIV 122

Query: 122 QLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIF 181
            + G++GW ELL ALVTCLDSND+NHM+GAMDALSKICEDIP VLD++VPGLAE PINIF
Sbjct: 123 NIEGVSGWHELLPALVTCLDSNDLNHMDGAMDALSKICEDIPHVLDTEVPGLAERPINIF 182

Query: 182 LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLV 241
           LPRLLQFFQSPH SLRKL+LGSVNQ+I++MP+AL+ S+D+YLQGLF+L+NDP  EVRKLV
Sbjct: 183 LPRLLQFFQSPHASLRKLALGSVNQYIIIMPAALYNSLDKYLQGLFVLANDPVPEVRKLV 242

Query: 242 CAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKE 301
           CAAF  L EV PS +EPHLRN+ EYMLQVN+D D++V+LEACEFW +Y +AQLP ENLKE
Sbjct: 243 CAAFVHLTEVLPSSIEPHLRNVMEYMLQVNRDPDEEVSLEACEFWSAYCDAQLPPENLKE 302

Query: 302 FLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDI 361
           FLPRL+PVLL NM YADDDESL++AEEDES PDRDQDLKPRFH+SRLHGSE+ +DDDDD 
Sbjct: 303 FLPRLIPVLLENMAYADDDESLLDAEEDESQPDRDQDLKPRFHTSRLHGSEDFDDDDDDS 362

Query: 362 VNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAE 421
            NVWNLRKCSAAA+DVLSNVFGDEILP LMP+IQ  LSASGDEAWK REAAVLALGAIAE
Sbjct: 363 FNVWNLRKCSAAAIDVLSNVFGDEILPALMPLIQKNLSASGDEAWKQREAAVLALGAIAE 422

Query: 422 GCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVL 481
           GC+ GLYPHLSEIVAFL+PLLDDKFPLIRSISCWTLSRF K+++Q+ G+  G EQFEKVL
Sbjct: 423 GCMNGLYPHLSEIVAFLLPLLDDKFPLIRSISCWTLSRFGKYLIQESGNPKGYEQFEKVL 482

Query: 482 MGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVY 541
           MGLL+R+LDTNKRVQEAACSAFAT+EE+AAEEL P L +ILQHLM AFGKYQRRNLRIVY
Sbjct: 483 MGLLRRLLDTNKRVQEAACSAFATVEEDAAEELVPHLGVILQHLMCAFGKYQRRNLRIVY 542

Query: 542 DAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFT 601
           DAIGTLAD+V  ELN+P YL+ILMPPL+AKWQQL NSDKDLFPLLECFTSI+QALG GF 
Sbjct: 543 DAIGTLADSVREELNKPAYLEILMPPLVAKWQQLSNSDKDLFPLLECFTSISQALGVGFA 602

Query: 602 QFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQ 661
            FAQPVFQRC++IIQ QQLAKV+  +AGAQYD+EF+VC LDLLSGLAEGLGSGIESLV Q
Sbjct: 603 PFAQPVFQRCMDIIQLQQLAKVNPASAGAQYDREFIVCSLDLLSGLAEGLGSGIESLVQQ 662

Query: 662 SNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKET 721
           SNLRD+LL CC+D+A+DVRQSAFAL+GDLARV PV+LQ RL DFL+IA++QL+    +E 
Sbjct: 663 SNLRDLLLNCCIDEAADVRQSAFALMGDLARVFPVYLQPRLLDFLEIASQQLSANLNREN 722

Query: 722 VSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAW 781
           +SVANNACWAIGELAVK RQE+SPIV  VV  L  IL+H E +NK+L+ENSAITLGRLAW
Sbjct: 723 LSVANNACWAIGELAVKVRQEVSPIVAKVVSSLGLILQHGEGVNKALVENSAITLGRLAW 782

Query: 782 VCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIA 841
           + P+LV+PHM+HFM+PWC+ALSM+RDD EKEDAFRGLCA+VK NPSG +SSLVF+C+AIA
Sbjct: 783 IRPDLVAPHMDHFMKPWCMALSMVRDDIEKEDAFRGLCAVVKVNPSGGVSSLVFICQAIA 842

Query: 842 SWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKYQV 891
           SWHEIRSE++  EV QVL+GYK ML N +W +C+SAL+PPVK++L++YQV
Sbjct: 843 SWHEIRSEDVQTEVSQVLNGYKHMLGN-SWAECLSALDPPVKERLARYQV 891

Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus (By similarity). Involved in nuclear import of M9-containing proteins. In vitro, binds directly to the M9 region of the glycine-rich RNA-binding RBG7 and mediates its nuclear import.
Arabidopsis thaliana (taxid: 3702)

>sp\|B8ARW2\|TNPO1_ORYSI Transportin-1 OS=Oryza sativa subsp. indica GN=OsI_18044 PE=2 SV=1	Back alignment and function description

>sp\|B9FDR3\|TNPO1_ORYSJ Transportin-1 OS=Oryza sativa subsp. japonica GN=TRN1 PE=3 SV=2	Back alignment and function description

>sp\|Q8BFY9\|TNPO1_MOUSE Transportin-1 OS=Mus musculus GN=Tnpo1 PE=1 SV=2	Back alignment and function description

>sp\|Q92973\|TNPO1_HUMAN Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2	Back alignment and function description

>sp\|Q3SYU7\|TNPO1_BOVIN Transportin-1 OS=Bos taurus GN=TNPO1 PE=2 SV=2	Back alignment and function description

>sp\|Q99LG2\|TNPO2_MOUSE Transportin-2 OS=Mus musculus GN=Tnpo2 PE=2 SV=1	Back alignment and function description

>sp\|O14787\|TNPO2_HUMAN Transportin-2 OS=Homo sapiens GN=TNPO2 PE=1 SV=3	Back alignment and function description

>sp\|O14089\|IMB2_SCHPO Importin subunit beta-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=kap104 PE=3 SV=1	Back alignment and function description

>sp\|Q55CQ7\|TNPO_DICDI Transportin OS=Dictyostelium discoideum GN=tnpo PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		891
449458638		891	PREDICTED: transportin-1-like [Cucumis s	1.0	1.0	0.845	0.0
359475006		896	PREDICTED: transportin-1-like [Vitis vin	0.997	0.992	0.846	0.0
224105121		886	predicted protein [Populus trichocarpa]	0.993	0.998	0.845	0.0
356536398		893	PREDICTED: transportin-1-like isoform 1	0.998	0.996	0.842	0.0
356536400		897	PREDICTED: transportin-1-like isoform 2	0.998	0.992	0.839	0.0
224078397		888	predicted protein [Populus trichocarpa]	0.991	0.994	0.849	0.0
356575454		896	PREDICTED: transportin-1-like [Glycine m	0.998	0.993	0.847	0.0
79322370		891	transportin 1 [Arabidopsis thaliana] gi\|	0.997	0.997	0.773	0.0
297832284		891	protein transporter [Arabidopsis lyrata	0.997	0.997	0.769	0.0
23954104		894	transportin [Arabidopsis thaliana]	0.997	0.994	0.770	0.0

>gi\|449458638\|ref\|XP_004147054.1\| PREDICTED: transportin-1-like [Cucumis sativus]	Back alignment and taxonomy information

 Score = 1554 bits (4024), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 753/891 (84%), Positives = 827/891 (92%)

Query: 1   MATSVAWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARA 60
           MA S +W PQE GFNEIC LLEQQISP+S  DKSQIWQQLQQYSQFPDFNNYLAFILARA
Sbjct: 1   MAASASWHPQENGFNEICGLLEQQISPTSNPDKSQIWQQLQQYSQFPDFNNYLAFILARA 60

Query: 61  EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVV 120
           EGKSVE+RQAAGLLLKNNLRTAYKSM+P  QQYIKSELLPC+GAADRHIRSTVGTI+SV+
Sbjct: 61  EGKSVEVRQAAGLLLKNNLRTAYKSMTPVFQQYIKSELLPCMGAADRHIRSTVGTIISVI 120

Query: 121 VQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINI 180
           VQLGGI GW ELLQALV CLDS D NHMEGAMDALSKICEDIPQVLDSDVPGL+E PIN+
Sbjct: 121 VQLGGILGWPELLQALVRCLDSKDQNHMEGAMDALSKICEDIPQVLDSDVPGLSERPINV 180

Query: 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKL 240
           FLPRL QFFQSPH +LRKLSL SVNQ+IMLMP+AL++SMDQYLQGLF+L+ND ++EVRKL
Sbjct: 181 FLPRLFQFFQSPHATLRKLSLSSVNQYIMLMPTALYISMDQYLQGLFVLANDSTSEVRKL 240

Query: 241 VCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLK 300
           VC AF  LIEVRP+FLEPHLRN+ EYMLQVNKD D++V+LEACEFW +Y +AQLP ENL+
Sbjct: 241 VCQAFVQLIEVRPTFLEPHLRNVIEYMLQVNKDADEEVSLEACEFWSAYCDAQLPPENLR 300

Query: 301 EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDD 360
           EFLPRL+P LLSNM+YADDDESL+EAEED SLPDR+QDLKPRFHSSRLHGSEN EDDDDD
Sbjct: 301 EFLPRLIPALLSNMVYADDDESLLEAEEDGSLPDREQDLKPRFHSSRLHGSENAEDDDDD 360

Query: 361 IVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIA 420
           IVN+WNLRKCSAAALD+LSNVFGD+ILP LMPV++A LSA+GDEAWK+REAAVLALGAIA
Sbjct: 361 IVNIWNLRKCSAAALDILSNVFGDDILPMLMPVVEANLSANGDEAWKEREAAVLALGAIA 420

Query: 421 EGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKV 480
           EGCI GLYPHL EIV FLIPLLDD+FPLIRSISCWTLSRFSKFIVQ IG Q G EQF+KV
Sbjct: 421 EGCITGLYPHLPEIVKFLIPLLDDRFPLIRSISCWTLSRFSKFIVQGIGTQKGYEQFDKV 480

Query: 481 LMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIV 540
           LMGLL+R+LD NKRVQEAACSAFATLEEEAAEELAP L+ ILQHL+ AFGKYQRRNLRIV
Sbjct: 481 LMGLLRRLLDNNKRVQEAACSAFATLEEEAAEELAPHLKNILQHLICAFGKYQRRNLRIV 540

Query: 541 YDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGF 600
           YDAIGTLADAVG ELNQPVYLDILMPPLIAKWQQL NSDKDLFPLLECFTSIAQALG GF
Sbjct: 541 YDAIGTLADAVGGELNQPVYLDILMPPLIAKWQQLSNSDKDLFPLLECFTSIAQALGTGF 600

Query: 601 TQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVA 660
           TQFA PV+QRCINIIQTQQ+AK++ V+AG QYD+EF+VCCLDLLSGLAEGLGSGIESLV+
Sbjct: 601 TQFAPPVYQRCINIIQTQQMAKIEPVSAGIQYDREFIVCCLDLLSGLAEGLGSGIESLVS 660

Query: 661 QSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKE 720
           QSNLRD+LLQCCMD+ASDVRQSAFALLGDL RVC VHLQ  LS+FL  AAKQL+TPKLKE
Sbjct: 661 QSNLRDLLLQCCMDEASDVRQSAFALLGDLGRVCHVHLQLLLSEFLTAAAKQLDTPKLKE 720

Query: 721 TVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLA 780
            VSVANNACWAIGELAVK RQEISP+VMTV+  LVPIL+H++ELNKSL+ENSAITLGR+A
Sbjct: 721 IVSVANNACWAIGELAVKVRQEISPVVMTVISSLVPILQHAQELNKSLVENSAITLGRIA 780

Query: 781 WVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAI 840
           WVCP+LVSPHMEHF+QPWC ALSMIRDD EKEDAFRGLCA+VK+NPSGA++SL +MC+AI
Sbjct: 781 WVCPQLVSPHMEHFIQPWCTALSMIRDDVEKEDAFRGLCALVKSNPSGAVTSLPYMCKAI 840

Query: 841 ASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKYQV 891
           ASWHEIRS++LHNEVCQVLHGYKQMLRNG WDQC+S+LEP VKDKLSKYQV
Sbjct: 841 ASWHEIRSQDLHNEVCQVLHGYKQMLRNGGWDQCISSLEPSVKDKLSKYQV 891

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359475006\|ref\|XP_002280484.2\| PREDICTED: transportin-1-like [Vitis vinifera] gi\|297744566\|emb\|CBI37828.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224105121\|ref\|XP_002313694.1\| predicted protein [Populus trichocarpa] gi\|222850102\|gb\|EEE87649.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356536398\|ref\|XP_003536725.1\| PREDICTED: transportin-1-like isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|356536400\|ref\|XP_003536726.1\| PREDICTED: transportin-1-like isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|224078397\|ref\|XP_002305534.1\| predicted protein [Populus trichocarpa] gi\|222848498\|gb\|EEE86045.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356575454\|ref\|XP_003555856.1\| PREDICTED: transportin-1-like [Glycine max]	Back alignment and taxonomy information

>gi\|79322370\|ref\|NP_001031359.1\| transportin 1 [Arabidopsis thaliana] gi\|25083223\|gb\|AAN72052.1\| putative transportin [Arabidopsis thaliana] gi\|31711774\|gb\|AAP68243.1\| At2g16950 [Arabidopsis thaliana] gi\|330251468\|gb\|AEC06562.1\| transportin 1 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297832284\|ref\|XP_002884024.1\| protein transporter [Arabidopsis lyrata subsp. lyrata] gi\|297329864\|gb\|EFH60283.1\| protein transporter [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|23954104\|emb\|CAC80068.1\| transportin [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		891
TAIR\|locus:2039410		891	TRN1 "AT2G16950" [Arabidopsis	0.997	0.997	0.729	0.0
MGI\|MGI:2681523		898	Tnpo1 "transportin 1" [Mus mus	0.971	0.964	0.422	3.1e-193
UNIPROTKB\|F1LQP9		897	Tnpo1 "Protein Tnpo1" [Rattus	0.971	0.965	0.422	3.1e-193
UNIPROTKB\|Q3SYU7		898	TNPO1 "Transportin-1" [Bos tau	0.971	0.964	0.422	8.3e-193
UNIPROTKB\|Q92973		898	TNPO1 "Transportin-1" [Homo sa	0.971	0.964	0.421	1.4e-192
UNIPROTKB\|I3LM93		893	TNPO1 "Uncharacterized protein	0.971	0.969	0.421	1.7e-192
UNIPROTKB\|F1PRW7		1048	TNPO2 "Uncharacterized protein	0.971	0.826	0.424	1.1e-190
UNIPROTKB\|F1SEX5		887	TNPO2 "Uncharacterized protein	0.971	0.976	0.424	1.1e-190
MGI\|MGI:2384849		887	Tnpo2 "transportin 2 (importin	0.971	0.976	0.424	1.1e-190
UNIPROTKB\|F1MBJ7		1037	TNPO2 "Uncharacterized protein	0.971	0.835	0.424	2.3e-190

TAIR\|locus:2039410 TRN1 "AT2G16950" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3413 (1206.5 bits), Expect = 0., P = 0.
 Identities = 649/890 (72%), Positives = 752/890 (84%)

Query:     2 ATSVAWQPQEQGFNEICRLLEQQISPSSTADKSXXXXXXXXXXXFPDFNNYLAFILARAE 61
             AT+V WQP++ G  EIC LLEQQISPSS  DKS           FPDFNNYL FIL RAE
Sbjct:     3 ATAVVWQPRDDGLAEICSLLEQQISPSSVVDKSQIWKQLQHFSQFPDFNNYLVFILVRAE 62

Query:    62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVV 121
             GKSVE+RQAAGLLLKNNLR AY SM+  NQ+YIKSELLPCLGAADR+IR+TVGTI+SV+V
Sbjct:    63 GKSVEVRQAAGLLLKNNLRGAYPSMTQENQKYIKSELLPCLGAADRNIRTTVGTIISVIV 122

Query:   122 QLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIF 181
              + G++GW ELL ALVTCLDSND+NHM+GAMDALSKICEDIP VLD++VPGLAE PINIF
Sbjct:   123 NIEGVSGWHELLPALVTCLDSNDLNHMDGAMDALSKICEDIPHVLDTEVPGLAERPINIF 182

Query:   182 LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLV 241
             LPRLLQFFQSPH SLRKL+LGSVNQ+I++MP+AL+ S+D+YLQGLF+L+NDP  EVRKLV
Sbjct:   183 LPRLLQFFQSPHASLRKLALGSVNQYIIIMPAALYNSLDKYLQGLFVLANDPVPEVRKLV 242

Query:   242 CAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKE 301
             CAAF  L EV PS +EPHLRN+ EYMLQVN+D D++V+LEACEFW +Y +AQLP ENLKE
Sbjct:   243 CAAFVHLTEVLPSSIEPHLRNVMEYMLQVNRDPDEEVSLEACEFWSAYCDAQLPPENLKE 302

Query:   302 FLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDI 361
             FLPRL+PVLL NM YADDDESL++AEEDES PDRDQDLKPRFH+SRLHGSE+ +DDDDD 
Sbjct:   303 FLPRLIPVLLENMAYADDDESLLDAEEDESQPDRDQDLKPRFHTSRLHGSEDFDDDDDDS 362

Query:   362 VNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAE 421
              NVWNLRKCSAAA+DVLSNVFGDEILP LMP+IQ  LSASGDEAWK REAAVLALGAIAE
Sbjct:   363 FNVWNLRKCSAAAIDVLSNVFGDEILPALMPLIQKNLSASGDEAWKQREAAVLALGAIAE 422

Query:   422 GCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVL 481
             GC+ GLYPHLSEIVAFL+PLLDDKFPLIRSISCWTLSRF K+++Q+ G+  G EQFEKVL
Sbjct:   423 GCMNGLYPHLSEIVAFLLPLLDDKFPLIRSISCWTLSRFGKYLIQESGNPKGYEQFEKVL 482

Query:   482 MGLLKRILDTNKRVQEAACSXXXXXXXXXXXXXXXXXXIILQHLMMAFGKYQRRNLRIVY 541
             MGLL+R+LDTNKRVQEAACS                  +ILQHLM AFGKYQRRNLRIVY
Sbjct:   483 MGLLRRLLDTNKRVQEAACSAFATVEEDAAEELVPHLGVILQHLMCAFGKYQRRNLRIVY 542

Query:   542 DAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFT 601
             DAIGTLAD+V  ELN+P YL+ILMPPL+AKWQQL NSDKDLFPLLECFTSI+QALG GF 
Sbjct:   543 DAIGTLADSVREELNKPAYLEILMPPLVAKWQQLSNSDKDLFPLLECFTSISQALGVGFA 602

Query:   602 QFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCXXXXXXXXXXXXXXXXXXVAQ 661
              FAQPVFQRC++IIQ QQLAKV+  +AGAQYD+EF+VC                   V Q
Sbjct:   603 PFAQPVFQRCMDIIQLQQLAKVNPASAGAQYDREFIVCSLDLLSGLAEGLGSGIESLVQQ 662

Query:   662 SNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKET 721
             SNLRD+LL CC+D+A+DVRQSAFAL+GDLARV PV+LQ RL DFL+IA++QL+    +E 
Sbjct:   663 SNLRDLLLNCCIDEAADVRQSAFALMGDLARVFPVYLQPRLLDFLEIASQQLSANLNREN 722

Query:   722 VSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAW 781
             +SVANNACWAIGELAVK RQE+SPIV  VV  L  IL+H E +NK+L+ENSAITLGRLAW
Sbjct:   723 LSVANNACWAIGELAVKVRQEVSPIVAKVVSSLGLILQHGEGVNKALVENSAITLGRLAW 782

Query:   782 VCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIA 841
             + P+LV+PHM+HFM+PWC+ALSM+RDD EKEDAFRGLCA+VK NPSG +SSLVF+C+AIA
Sbjct:   783 IRPDLVAPHMDHFMKPWCMALSMVRDDIEKEDAFRGLCAVVKVNPSGGVSSLVFICQAIA 842

Query:   842 SWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKYQV 891
             SWHEIRSE++  EV QVL+GYK ML N +W +C+SAL+PPVK++L++YQV
Sbjct:   843 SWHEIRSEDVQTEVSQVLNGYKHMLGN-SWAECLSALDPPVKERLARYQV 891

GO:0000059 "protein import into nucleus, docking" evidence=ISS

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0005643 "nuclear pore" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS;IDA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA;ISS;IDA

GO:0051170 "nuclear import" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA

GO:0052546 "cell wall pectin metabolic process" evidence=RCA

MGI\|MGI:2681523 Tnpo1 "transportin 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1LQP9 Tnpo1 "Protein Tnpo1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q3SYU7 TNPO1 "Transportin-1" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q92973 TNPO1 "Transportin-1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LM93 TNPO1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PRW7 TNPO2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SEX5 TNPO2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

MGI\|MGI:2384849 Tnpo2 "transportin 2 (importin 3, karyopherin beta 2b)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MBJ7 TNPO2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8H0U4	TNPO1_ARATH	No assigned EC number	0.7730	0.9977	0.9977	yes	no
O14089	IMB2_SCHPO	No assigned EC number	0.3759	0.9562	0.9362	yes	no
Q3SYU7	TNPO1_BOVIN	No assigned EC number	0.4488	0.9719	0.9643	yes	no
Q8BFY9	TNPO1_MOUSE	No assigned EC number	0.45	0.9719	0.9643	yes	no
P38217	IMB2_YEAST	No assigned EC number	0.3054	0.8945	0.8681	yes	no
B8ARW2	TNPO1_ORYSI	No assigned EC number	0.7443	0.9977	0.9988	N/A	no
B9FDR3	TNPO1_ORYSJ	No assigned EC number	0.7452	0.9966	0.9966	yes	no
Q92973	TNPO1_HUMAN	No assigned EC number	0.4488	0.9719	0.9643	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		891
COG5215		858	COG5215, KAP95, Karyopherin (importin) beta [Intra	7e-21
pfam13513		55	pfam13513, HEAT_EZ, HEAT-like repeat	3e-10
pfam03810		71	pfam03810, IBN_N, Importin-beta N-terminal domain	1e-09
smart00913		67	smart00913, IBN_N, Importin-beta N-terminal domain	2e-08
COG5215		858	COG5215, KAP95, Karyopherin (importin) beta [Intra	5e-07

>gnl\|CDD\|227540 COG5215, KAP95, Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

 Score = 98.1 bits (244), Expect = 7e-21
 Identities = 110/567 (19%), Positives = 217/567 (38%), Gaps = 79/567 (13%)

Query: 16  EICRLLEQQI-SPSSTADKSQIWQQLQ-QYSQFPDFNNYLAFILARAEGKSVEIRQAAGL 73
           E   L +  + SP   A      Q L+ Q   F  F + L  +L      + ++R  AGL
Sbjct: 5   EFRCLGKNHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCD-LNSNDQLRMVAGL 63

Query: 74  LLKNNL-----------RTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQ 122
           +LKN+L              +  M   +++ +K   L  L + +    +    +++ + +
Sbjct: 64  ILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIAR 123

Query: 123 LGGIAG-WLELLQALV--TCLDSNDINHMEGAMDALSKICEDI-PQVLDSDVPGLAECPI 178
           +      W  L++ +V     D   ++    ++      CE   P+ L            
Sbjct: 124 MELPNSLWPGLMEEMVRNVG-DEQPVSGKCESLGICGYHCESEAPEDLIQMS-------- 174

Query: 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV--------SMDQYLQGLFLLS 230
           N+ L  ++       T+   + L ++     LM S +FV          + ++Q +   +
Sbjct: 175 NVILFAIVMGALKNETTSA-VRLAALK---ALMDSLMFVQGNFCYEEERNYFMQVVCEAT 230

Query: 231 NDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRN-LFEYMLQVNKDTDDDVALEACEFWHSY 289
                E++       N ++ +   F++ ++ N L     +  K  +D+VA++A EFW + 
Sbjct: 231 QGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTI 290

Query: 290 FEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLH 349
            E ++  E   ++LP                   V A+          D+ P   S    
Sbjct: 291 CEEEIDGEMEDKYLPE------------------VPAQNHGFARAAVADVLPELLSLLEK 332

Query: 350 GSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDR 409
             E+   DD      WN    +++ L + + + GD+I+  ++  ++  + +   E+W +R
Sbjct: 333 QGEDYYGDD------WNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRS---ESWANR 383

Query: 410 EAAVLALGAIAEG-CIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDI 468
           EAAV+A G++  G C   L   + + +  +   + D    ++S + W     +  +   I
Sbjct: 384 EAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMII 443

Query: 469 ---GHQNGREQFEKVLMGLL---KRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIIL 522
              GH          L+GL+    R ++ + R +       A    E    LA     IL
Sbjct: 444 SPCGHLVLEVS--ASLIGLMDCPFRSINCSWRKENLVDH-IAKAVREVESFLAKFYLAIL 500

Query: 523 QHLMMAFG-KYQRRNLRI-VYDAIGTL 547
             L+          NLR+ ++ A+GTL
Sbjct: 501 NALVKGTELALNESNLRVSLFSALGTL 527

Length = 858

>gnl\|CDD\|205691 pfam13513, HEAT_EZ, HEAT-like repeat	Back alignment and domain information

>gnl\|CDD\|217743 pfam03810, IBN_N, Importin-beta N-terminal domain	Back alignment and domain information

>gnl\|CDD\|197981 smart00913, IBN_N, Importin-beta N-terminal domain	Back alignment and domain information

>gnl\|CDD\|227540 COG5215, KAP95, Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		891
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	100.0
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	100.0
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	100.0
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	100.0
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	100.0
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	100.0
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	100.0
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	100.0
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	100.0
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	100.0
COG5656		970	SXM1 Importin, protein involved in nuclear import	100.0
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	100.0
KOG1824		1233	consensus TATA-binding protein-interacting protein	100.0
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	99.97
KOG1824		1233	consensus TATA-binding protein-interacting protein	99.95
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.95
KOG2021		980	consensus Nuclear mRNA export factor receptor LOS1	99.94
COG5657		947	CSE1 CAS/CSE protein involved in chromosome segreg	99.93
KOG2022		982	consensus Nuclear transport receptor LGL2 (importi	99.9
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	99.89
COG5101		1053	CRM1 Importin beta-related nuclear transport recep	99.88
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	99.88
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.88
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	99.87
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	99.83
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	99.83
KOG1242		569	consensus Protein containing adaptin N-terminal re	99.79
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	99.77
KOG2081		559	consensus Nuclear transport regulator [Intracellul	99.77
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	99.76
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	99.76
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	99.74
KOG1242		569	consensus Protein containing adaptin N-terminal re	99.74
KOG0212		675	consensus Uncharacterized conserved protein [Funct	99.69
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.67
PTZ00429		746	beta-adaptin; Provisional	99.66
KOG0212		675	consensus Uncharacterized conserved protein [Funct	99.66
PTZ00429		746	beta-adaptin; Provisional	99.66
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	99.63
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.61
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	99.59
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	99.56
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	99.55
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	99.54
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	99.53
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	99.45
PRK09687		280	putative lyase; Provisional	99.39
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	99.37
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	99.37
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	99.36
KOG2020		1041	consensus Nuclear transport receptor CRM1/MSN5 (im	99.35
PRK09687		280	putative lyase; Provisional	99.34
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	99.34
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.32
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	99.3
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.29
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	99.27
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	99.23
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.22
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	99.22
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	99.19
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.17
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	99.14
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	99.06
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	99.06
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	99.04
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	99.03
PF03810		77	IBN_N: Importin-beta N-terminal domain; InterPro:	98.96
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	98.93
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	98.92
KOG4224		550	consensus Armadillo repeat protein VAC8 required f	98.92
COG5656		970	SXM1 Importin, protein involved in nuclear import	98.92
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	98.91
KOG4224		550	consensus Armadillo repeat protein VAC8 required f	98.9
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.89
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.89
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	98.87
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	98.86
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	98.83
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	98.82
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.78
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.75
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.74
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	98.73
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	98.7
KOG1078		865	consensus Vesicle coat complex COPI, gamma subunit	98.68
KOG2032		533	consensus Uncharacterized conserved protein [Funct	98.62
KOG0414		1251	consensus Chromosome condensation complex Condensi	98.62
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.58
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.56
KOG2259		823	consensus Uncharacterized conserved protein [Funct	98.56
PF05804		708	KAP: Kinesin-associated protein (KAP)	98.49
KOG4535		728	consensus HEAT and armadillo repeat-containing pro	98.45
KOG4535		728	consensus HEAT and armadillo repeat-containing pro	98.41
KOG1078		865	consensus Vesicle coat complex COPI, gamma subunit	98.38
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	98.38
KOG0414		1251	consensus Chromosome condensation complex Condensi	98.35
KOG2259		823	consensus Uncharacterized conserved protein [Funct	98.35
PF08389		148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	98.33
KOG2062		929	consensus 26S proteasome regulatory complex, subun	98.27
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	98.24
KOG1077		938	consensus Vesicle coat complex AP-2, alpha subunit	98.24
COG5096		757	Vesicle coat complex, various subunits [Intracellu	98.22
KOG1077		938	consensus Vesicle coat complex AP-2, alpha subunit	98.22
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	98.16
KOG4653		982	consensus Uncharacterized conserved protein [Funct	98.13
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	98.13
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.1
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	98.08
COG5096		757	Vesicle coat complex, various subunits [Intracellu	98.03
KOG2956		516	consensus CLIP-associating protein [General functi	98.0
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.99
KOG1820		815	consensus Microtubule-associated protein [Cytoskel	97.99
PF05804		708	KAP: Kinesin-associated protein (KAP)	97.95
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	97.95
KOG0891		2341	consensus DNA-dependent protein kinase [Replicatio	97.93
PF05004		309	IFRD: Interferon-related developmental regulator (	97.93
KOG0168		1051	consensus Putative ubiquitin fusion degradation pr	97.92
PF05004		309	IFRD: Interferon-related developmental regulator (	97.91
KOG2956		516	consensus CLIP-associating protein [General functi	97.89
KOG1820		815	consensus Microtubule-associated protein [Cytoskel	97.88
KOG2022		982	consensus Nuclear transport receptor LGL2 (importi	97.88
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	97.84
KOG0168		1051	consensus Putative ubiquitin fusion degradation pr	97.83
KOG4413		524	consensus 26S proteasome regulatory complex, subun	97.8
KOG4413		524	consensus 26S proteasome regulatory complex, subun	97.79
KOG4653		982	consensus Uncharacterized conserved protein [Funct	97.74
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	97.74
TIGR02270		410	conserved hypothetical protein. Members are found	97.71
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.7
KOG2032		533	consensus Uncharacterized conserved protein [Funct	97.69
KOG1293		678	consensus Proteins containing armadillo/beta-caten	97.68
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	97.67
KOG0413		1529	consensus Uncharacterized conserved protein relate	97.66
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.65
TIGR02270		410	conserved hypothetical protein. Members are found	97.64
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	97.63
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	97.6
COG1413		335	FOG: HEAT repeat [Energy production and conversion	97.57
KOG2021		980	consensus Nuclear mRNA export factor receptor LOS1	97.57
KOG1851		1710	consensus Uncharacterized conserved protein [Funct	97.54
KOG0413		1529	consensus Uncharacterized conserved protein relate	97.54
COG1413		335	FOG: HEAT repeat [Energy production and conversion	97.44
KOG1967		1030	consensus DNA repair/transcription protein Mms19 [	97.42
PF10274		183	ParcG: Parkin co-regulated protein; InterPro: IPR0	97.42
KOG2933		334	consensus Uncharacterized conserved protein [Funct	97.4
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	97.4
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.39
KOG0891		2341	consensus DNA-dependent protein kinase [Replicatio	97.38
PLN03076		1780	ARF guanine nucleotide exchange factor (ARF-GEF);	97.37
PF08569		335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.35
KOG4524		1014	consensus Uncharacterized conserved protein [Funct	97.33
PF08167		165	RIX1: rRNA processing/ribosome biogenesis	97.32
PLN03076		1780	ARF guanine nucleotide exchange factor (ARF-GEF);	97.32
KOG1410		1082	consensus Nuclear transport receptor RanBP16 (impo	97.28
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	97.24
KOG1525		1266	consensus Sister chromatid cohesion complex Cohesi	97.21
PF11865		160	DUF3385: Domain of unknown function (DUF3385); Int	97.21
KOG2160		342	consensus Armadillo/beta-catenin-like repeat-conta	97.21
KOG2062		929	consensus 26S proteasome regulatory complex, subun	97.19
PF13001		501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	97.19
PF08167		165	RIX1: rRNA processing/ribosome biogenesis	97.06
cd00256		429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	97.04
PF13251		182	DUF4042: Domain of unknown function (DUF4042)	97.03
KOG2081		559	consensus Nuclear transport regulator [Intracellul	96.99
PF10274		183	ParcG: Parkin co-regulated protein; InterPro: IPR0	96.93
KOG1949		1005	consensus Uncharacterized conserved protein [Funct	96.79
KOG1517		1387	consensus Guanine nucleotide binding protein MIP1	96.77
KOG2025		892	consensus Chromosome condensation complex Condensi	96.72
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.65
PF08064		107	UME: UME (NUC010) domain; InterPro: IPR012993 This	96.6
PF13251		182	DUF4042: Domain of unknown function (DUF4042)	96.54
COG5218		885	YCG1 Chromosome condensation complex Condensin, su	96.53
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	96.52
KOG1967		1030	consensus DNA repair/transcription protein Mms19 [	96.51
KOG2933		334	consensus Uncharacterized conserved protein [Funct	96.5
KOG2759		442	consensus Vacuolar H+-ATPase V1 sector, subunit H	96.49
PF12231		372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	96.48
cd00256		429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	96.47
KOG0889		3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	96.4
KOG1293		678	consensus Proteins containing armadillo/beta-caten	96.35
smart00802		107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	96.32
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	96.29
KOG1048		717	consensus Neural adherens junction protein Plakoph	96.27
PF01603		409	B56: Protein phosphatase 2A regulatory B subunit (	96.21
KOG2549		576	consensus Transcription initiation factor TFIID, s	96.18
PF05536		543	Neurochondrin: Neurochondrin	96.15
KOG2160		342	consensus Armadillo/beta-catenin-like repeat-conta	96.12
PF11865		160	DUF3385: Domain of unknown function (DUF3385); Int	96.06
KOG1949		1005	consensus Uncharacterized conserved protein [Funct	96.06
KOG0567		289	consensus HEAT repeat-containing protein [General	96.02
KOG1243		690	consensus Protein kinase [General function predict	96.02
KOG0567		289	consensus HEAT repeat-containing protein [General	96.02
PF08623		169	TIP120: TATA-binding protein interacting (TIP20);	95.82
KOG4500		604	consensus Rho/Rac GTPase guanine nucleotide exchan	95.81
KOG1525		1266	consensus Sister chromatid cohesion complex Cohesi	95.8
KOG2137		700	consensus Protein kinase [Signal transduction mech	95.78
KOG1517		1387	consensus Guanine nucleotide binding protein MIP1	95.76
PF08064		107	UME: UME (NUC010) domain; InterPro: IPR012993 This	95.73
KOG2759		442	consensus Vacuolar H+-ATPase V1 sector, subunit H	95.68
PF10521		282	DUF2454: Protein of unknown function (DUF2454); In	95.64
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	95.62
cd08050		343	TAF6 TATA Binding Protein (TBP) Associated Factor	95.55
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	95.54
COG5101		1053	CRM1 Importin beta-related nuclear transport recep	95.53
KOG0889		3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	95.51
PF04510		174	DUF577: Family of unknown function (DUF577); Inter	95.3
COG5657		947	CSE1 CAS/CSE protein involved in chromosome segreg	95.23
PF12054		441	DUF3535: Domain of unknown function (DUF3535); Int	95.22
KOG2137		700	consensus Protein kinase [Signal transduction mech	95.21
PF08623		169	TIP120: TATA-binding protein interacting (TIP20);	95.18
PF10521		282	DUF2454: Protein of unknown function (DUF2454); In	95.14
PF11864		464	DUF3384: Domain of unknown function (DUF3384); Int	95.11
PF13001		501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	95.0
PF04118		307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	94.99
smart00802		107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	94.97
KOG4524		1014	consensus Uncharacterized conserved protein [Funct	94.91
COG5116		926	RPN2 26S proteasome regulatory complex component [	94.88
PF10363		92	DUF2435: Protein of unknown function (DUF2435)	94.67
KOG4500		604	consensus Rho/Rac GTPase guanine nucleotide exchan	94.56
KOG1243		690	consensus Protein kinase [General function predict	94.52
COG5116		926	RPN2 26S proteasome regulatory complex component [	94.52
KOG2149		393	consensus Uncharacterized conserved protein [Funct	94.44
PF08569		335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	94.39
PF01603		409	B56: Protein phosphatase 2A regulatory B subunit (	94.31
PF11919		90	DUF3437: Domain of unknown function (DUF3437); Int	94.31
PF10363		92	DUF2435: Protein of unknown function (DUF2435)	94.25
KOG1837		1621	consensus Uncharacterized conserved protein [Funct	94.25
KOG0803		1312	consensus Predicted E3 ubiquitin ligase [Posttrans	94.24
PF12530		234	DUF3730: Protein of unknown function (DUF3730) ; I	94.18
KOG1822		2067	consensus Uncharacterized conserved protein [Funct	94.09
COG5098		1128	Chromosome condensation complex Condensin, subunit	94.06
KOG2025		892	consensus Chromosome condensation complex Condensi	93.84
PF03224		312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	93.77
PF12830		187	Nipped-B_C: Sister chromatid cohesion C-terminus	93.72
PF01347		618	Vitellogenin_N: Lipoprotein amino terminal region;	93.65
KOG3961		262	consensus Uncharacterized conserved protein [Funct	93.64
smart00638		574	LPD_N Lipoprotein N-terminal Domain.	93.57
COG5095		450	TAF6 Transcription initiation factor TFIID, subuni	93.48
PF03224		312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	93.42
COG5095		450	TAF6 Transcription initiation factor TFIID, subuni	93.34
KOG2149		393	consensus Uncharacterized conserved protein [Funct	93.25
PF14664		371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	93.25
cd08050		343	TAF6 TATA Binding Protein (TBP) Associated Factor	93.01
PF12231		372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	92.57
KOG1048		717	consensus Neural adherens junction protein Plakoph	92.37
PF00514		41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	92.34
PF04118		307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	92.28
KOG1851		1710	consensus Uncharacterized conserved protein [Funct	92.25
KOG2549		576	consensus Transcription initiation factor TFIID, s	91.56
KOG4199		461	consensus Uncharacterized conserved protein [Funct	91.53
KOG1222		791	consensus Kinesin associated protein KAP [Intracel	91.32
PF07571		92	DUF1546: Protein of unknown function (DUF1546); In	91.29
PF01347		618	Vitellogenin_N: Lipoprotein amino terminal region;	91.26
KOG1837		1621	consensus Uncharacterized conserved protein [Funct	91.24
PF12054		441	DUF3535: Domain of unknown function (DUF3535); Int	91.12
PF08389		148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	91.05
KOG2213		460	consensus Apoptosis inhibitor 5/fibroblast growth	90.88
PF11864		464	DUF3384: Domain of unknown function (DUF3384); Int	90.58
cd03568		144	VHS_STAM VHS domain family, STAM subfamily; member	90.54
PF08161		198	NUC173: NUC173 domain; InterPro: IPR012978 This is	90.52
PF12830		187	Nipped-B_C: Sister chromatid cohesion C-terminus	90.27
KOG1822		2067	consensus Uncharacterized conserved protein [Funct	90.16
cd03567		139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	89.69
KOG0803		1312	consensus Predicted E3 ubiquitin ligase [Posttrans	89.66
PF00514		41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	89.5
smart00638		574	LPD_N Lipoprotein N-terminal Domain.	88.66
cd03561		133	VHS VHS domain family; The VHS domain is present i	88.59
KOG2122		2195	consensus Beta-catenin-binding protein APC, contai	88.36
cd03569		142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	88.12
PF11698		119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	87.44
smart00288		133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	87.29
cd03561		133	VHS VHS domain family; The VHS domain is present i	87.29
PF14664		371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	86.98
PF08161		198	NUC173: NUC173 domain; InterPro: IPR012978 This is	86.86
cd03568		144	VHS_STAM VHS domain family, STAM subfamily; member	86.84
PF11919		90	DUF3437: Domain of unknown function (DUF3437); Int	86.76
PF09324		86	DUF1981: Domain of unknown function (DUF1981); Int	86.65
PF00790		140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	86.64
PF12783		168	Sec7_N: Guanine nucleotide exchange factor in Golg	86.32
PF12074		339	DUF3554: Domain of unknown function (DUF3554); Int	86.31
KOG3961		262	consensus Uncharacterized conserved protein [Funct	86.13
KOG2011		1048	consensus Sister chromatid cohesion complex Cohesi	85.66
PF00790		140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	85.56
smart00288		133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	85.31
PF11707		330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	85.17
PF05536		543	Neurochondrin: Neurochondrin	85.12
KOG2085		457	consensus Serine/threonine protein phosphatase 2A,	84.84
cd03567		139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	84.36
PF03542		356	Tuberin: Tuberin; InterPro: IPR018515 Initiation o	84.16
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	84.13
cd03569		142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	84.04
PF12765		42	Cohesin_HEAT: HEAT repeat associated with sister c	83.98
KOG1222		791	consensus Kinesin associated protein KAP [Intracel	82.76
KOG1848		1610	consensus Uncharacterized conserved protein [Funct	82.55
COG5218		885	YCG1 Chromosome condensation complex Condensin, su	82.39
PF04510		174	DUF577: Family of unknown function (DUF577); Inter	81.92
PF12333		102	Ipi1_N: Rix1 complex component involved in 60S rib	81.9
PF08713		213	DNA_alkylation: DNA alkylation repair enzyme; Inte	81.76
PF08713		213	DNA_alkylation: DNA alkylation repair enzyme; Inte	81.75
KOG2973		353	consensus Uncharacterized conserved protein [Funct	81.69
PF04388		668	Hamartin: Hamartin protein; InterPro: IPR007483 Th	81.4
PF14868		559	DUF4487: Domain of unknown function (DUF4487)	81.3
PF11701		157	UNC45-central: Myosin-binding striated muscle asse	81.08
PF12333		102	Ipi1_N: Rix1 complex component involved in 60S rib	80.52

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=1.2e-132  Score=1002.95  Aligned_cols=871  Identities=55%  Similarity=0.951  Sum_probs=823.1

Q ss_pred             CCCCCCChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhh
Q 002697            4 SVAWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAY   83 (891)
Q Consensus         4 ~~~~~p~~~~~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w   83 (891)
                      .|.|+|++++++|+.++|++++|||++ +|+.+...++++...|+|..||+.||...++.+..+|.+|+.+|||.++.+|
T Consensus         2 ~~~w~p~e~~l~ql~~lLk~s~Spn~~-~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~   80 (885)
T KOG2023|consen    2 AMTWQPDEQGLQQLAQLLKNSQSPNSE-TRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHY   80 (885)
T ss_pred             CCCCcccHHHHHHHHHHHHhccCCChH-HHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccc
Confidence            479999999999999999999999999 9999999999999999999999999988888899999999999999999999


Q ss_pred             ccCChhhHHHHHHhHhhhhhcCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhch
Q 002697           84 KSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP  163 (891)
Q Consensus        84 ~~~~~~~~~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~  163 (891)
                      ..++++...++|..+++++.++++.||...+.++.+|+...+...||+++|.|.+++.+++....++|+.+|.++|++..
T Consensus        81 ~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa  160 (885)
T KOG2023|consen   81 NSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSA  160 (885)
T ss_pred             cCCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002697          164 QVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCA  243 (891)
Q Consensus       164 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~  243 (891)
                      ..+++++.   .+.++-++|+++++++++++.+|..|+.|++.++-..+..+..+++.|++.++.+.+|.+++||+.+|.
T Consensus       161 ~~lds~~~---~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~  237 (885)
T KOG2023|consen  161 QFLDSDVL---TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCR  237 (885)
T ss_pred             HHHhhhcc---cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHH
Confidence            88877654   478999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhh
Q 002697          244 AFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESL  323 (891)
Q Consensus       244 ~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~  323 (891)
                      +|+.+.+..++.+.||++.++++|++..++.|++|..+|+|||.++++.+.....+.||+++++|.++..|.|+++|+-.
T Consensus       238 alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~L  317 (885)
T KOG2023|consen  238 ALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIIL  317 (885)
T ss_pred             HHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hh-hcccCCCCCCCCCCCcccccccCCCCC-------CCCC--CCccccccccHHHHHHHHHHHHHHHcCcchhhhhHHH
Q 002697          324 VE-AEEDESLPDRDQDLKPRFHSSRLHGSE-------NPED--DDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPV  393 (891)
Q Consensus       324 ~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~-------~~~~--~d~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~  393 (891)
                      .+ .++|+.++|++++|||+|++.+..|..       ++||  ||||...+|+.|+|++.+|+.++..+|+++++.++|+
T Consensus       318 L~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~Pl  397 (885)
T KOG2023|consen  318 LKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPL  397 (885)
T ss_pred             hcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHH
Confidence            76 567789999999999999998765441       1221  3445567899999999999999999999999999999


Q ss_pred             HHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcc
Q 002697          394 IQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNG  473 (891)
Q Consensus       394 l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~  473 (891)
                      +.+.+.+.+   |.+|++++.++|++++||.+++.+|++.++|++++++.|..|.||..+||+|+|++.|+...    ..
T Consensus       398 Lk~~L~~~~---W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~----~~  470 (885)
T KOG2023|consen  398 LKEHLSSEE---WKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQD----SR  470 (885)
T ss_pred             HHHHcCcch---hhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcC----Ch
Confidence            999999988   99999999999999999999999999999999999999999999999999999999998753    35


Q ss_pred             hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcc
Q 002697          474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF  553 (891)
Q Consensus       474 ~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~  553 (891)
                      .+++.+++..+++.+-|++++||++||+|+..+-+.+++.+.||+..|+..+..+++.++.+++..+++||++++.++|.
T Consensus       471 ~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~  550 (885)
T KOG2023|consen  471 DEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGH  550 (885)
T ss_pred             HhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCchhhhhhhhHHHHHHHHcCCCCCcchHhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHH--HhhcCcccCCC
Q 002697          554 ELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQL--AKVDSVAAGAQ  631 (891)
Q Consensus       554 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~--~~~~~~~~~~e  631 (891)
                      ...+|.|++.+||+|++.|+..+++|+++..++||++.++.++|.+|.||.++++++++.++++..+  .+.+.+...+.
T Consensus       551 ~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~  630 (885)
T KOG2023|consen  551 ALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEA  630 (885)
T ss_pred             hcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccC
Confidence            9988999999999999999999999999999999999999999999999999999999999986533  23333333455


Q ss_pred             CchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHH
Q 002697          632 YDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAK  711 (891)
Q Consensus       632 ~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~  711 (891)
                      ||++++.+++|+++++++++|++.++++.+..+..+++.|++|+.++||+++|.++|++++.|.+.+.|++..+++.+..
T Consensus       631 pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~  710 (885)
T KOG2023|consen  631 PDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGA  710 (885)
T ss_pred             CCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhh
Confidence            79999999999999999999999999998878999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCcCchhHhhhHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhhhhhcCCccCcch
Q 002697          712 QLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHM  791 (891)
Q Consensus       712 ~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  791 (891)
                      ++..+    +.++.+||+||+|+++.+.+..+.+|+..++..|+.+++.+. ..+.+.+|.++++||+...+|+.++|++
T Consensus       711 Nl~~~----~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~-~~~tllENtAITIGrLg~~~Pe~vAp~l  785 (885)
T KOG2023|consen  711 NLNPE----NISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQN-TPKTLLENTAITIGRLGYICPEEVAPHL  785 (885)
T ss_pred             cCChh----hchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccC-chHHHHHhhhhhhhhhhccCHHhcchhH
Confidence            88887    789999999999999999999999999999999999998775 3678999999999999999999999999


Q ss_pred             hHHHHHHHhhccCCCCchHHHHHHHHHHHHHhhChhhhHhhHHHHhhHhhcccccCchhHHHHHHHHHHHHHhhcChhhH
Q 002697          792 EHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAW  871 (891)
Q Consensus       792 ~~~l~~~~~~l~~~~~~~e~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  871 (891)
                      +.++..||..+....|++||..||+|+|+++..||..+...+..+|+++++|.+|. +++++++.+++.++|..+|..+|
T Consensus       786 ~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv~~~~f~c~aiAsw~np~-~~l~~~f~kiL~g~k~qvg~~nW  864 (885)
T KOG2023|consen  786 DSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVVSSFIFICDAIASWSNPE-DDLRDEFYKILQGFKNQVGKINW  864 (885)
T ss_pred             HHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhhhhhHHHHHHHhcccChH-HHHHHHHHHHHHHHHHHhhhhhH
Confidence            99999999999999999999999999999999999999999999999999999865 78999999999999999999899


Q ss_pred             HHHHhcCCHHHHHHhhh-cCC
Q 002697          872 DQCMSALEPPVKDKLSK-YQV  891 (891)
Q Consensus       872 ~~~~~~~~~~~~~~L~~-~~~  891 (891)
                      +.+..+|||..+.+|+. |||
T Consensus       865 ~~~~~qf~P~~~erl~a~y~v  885 (885)
T KOG2023|consen  865 QRFSEQFPPPLKERLQAFYGV  885 (885)
T ss_pred             HHHhhcCChhHHHHHHHHhCC
Confidence            99999999999999955 997

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2956 consensus CLIP-associating protein [General function prediction only]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>KOG2956 consensus CLIP-associating protein [General function prediction only]	Back alignment and domain information

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]	Back alignment and domain information

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1851 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]	Back alignment and domain information

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter	Back alignment and domain information

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]	Back alignment and domain information

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional	Back alignment and domain information

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis	Back alignment and domain information

>KOG4524 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF08167 RIX1: rRNA processing/ribosome biogenesis	Back alignment and domain information

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional	Back alignment and domain information

>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length	Back alignment and domain information

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3	Back alignment and domain information

>PF08167 RIX1: rRNA processing/ribosome biogenesis	Back alignment and domain information

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments	Back alignment and domain information

>PF13251 DUF4042: Domain of unknown function (DUF4042)	Back alignment and domain information

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter	Back alignment and domain information

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []	Back alignment and domain information

>PF13251 DUF4042: Domain of unknown function (DUF4042)	Back alignment and domain information

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]	Back alignment and domain information

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]	Back alignment and domain information

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length	Back alignment and domain information

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments	Back alignment and domain information

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]	Back alignment and domain information

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]	Back alignment and domain information

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism	Back alignment and domain information

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

>PF05536 Neurochondrin: Neurochondrin	Back alignment and domain information

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length	Back alignment and domain information

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG1243 consensus Protein kinase [General function prediction only]	Back alignment and domain information

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]	Back alignment and domain information

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []	Back alignment and domain information

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]	Back alignment and domain information

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []	Back alignment and domain information

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]	Back alignment and domain information

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins	Back alignment and domain information

>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]	Back alignment and domain information

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised	Back alignment and domain information

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []	Back alignment and domain information

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []	Back alignment and domain information

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised	Back alignment and domain information

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3	Back alignment and domain information

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)	Back alignment and domain information

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1	Back alignment and domain information

>KOG4524 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF10363 DUF2435: Protein of unknown function (DUF2435)	Back alignment and domain information

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]	Back alignment and domain information

>KOG1243 consensus Protein kinase [General function prediction only]	Back alignment and domain information

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis	Back alignment and domain information

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism	Back alignment and domain information

>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised	Back alignment and domain information

>PF10363 DUF2435: Protein of unknown function (DUF2435)	Back alignment and domain information

>KOG1837 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length	Back alignment and domain information

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus	Back alignment and domain information

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []	Back alignment and domain information

>KOG3961 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>smart00638 LPD_N Lipoprotein N-terminal Domain	Back alignment and domain information

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term	Back alignment and domain information

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex	Back alignment and domain information

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length	Back alignment and domain information

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]	Back alignment and domain information

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless	Back alignment and domain information

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)	Back alignment and domain information

>KOG1851 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6)	Back alignment and domain information

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []	Back alignment and domain information

>KOG1837 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised	Back alignment and domain information

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised	Back alignment and domain information

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)	Back alignment and domain information

>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins []	Back alignment and domain information

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus	Back alignment and domain information

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins	Back alignment and domain information

>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless	Back alignment and domain information

>smart00638 LPD_N Lipoprotein N-terminal Domain	Back alignment and domain information

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)	Back alignment and domain information

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)	Back alignment and domain information

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>smart00288 VHS Domain present in VPS-27, Hrs and STAM	Back alignment and domain information

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)	Back alignment and domain information

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term	Back alignment and domain information

>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins []	Back alignment and domain information

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)	Back alignment and domain information

>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised	Back alignment and domain information

>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins	Back alignment and domain information

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM	Back alignment and domain information

>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal	Back alignment and domain information

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised	Back alignment and domain information

>KOG3961 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM	Back alignment and domain information

>smart00288 VHS Domain present in VPS-27, Hrs and STAM	Back alignment and domain information

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []	Back alignment and domain information

>PF05536 Neurochondrin: Neurochondrin	Back alignment and domain information

>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]	Back alignment and domain information

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins	Back alignment and domain information

>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)	Back alignment and domain information

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion	Back alignment and domain information

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins	Back alignment and domain information

>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]	Back alignment and domain information

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes	Back alignment and domain information

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes	Back alignment and domain information

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor	Back alignment and domain information

>PF14868 DUF4487: Domain of unknown function (DUF4487)	Back alignment and domain information

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle	Back alignment and domain information

>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]	Back alignment and domain information

Homologous Structure Templates